locus-tag class description CPB_RS00010 PF02686 Glu-tRNAGln amidotransferase C subunit CPB_RS00015 PF01425 Amidase CPB_RS00020 PF02934 GatB/GatE catalytic domain CPB_RS00020 PF02637 GatB domain CPB_RS00025 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00065 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00075 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00075 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS00080 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00080 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS00085 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS00085 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00090 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS00090 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00100 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00100 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS00105 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS00105 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS00120 PF02545 Maf-like protein CPB_RS00125 PF00005 ABC transporter CPB_RS00125 PF12848 ABC transporter CPB_RS00130 PF13495 Phage integrase, N-terminal SAM-like domain CPB_RS00130 PF00589 Phage integrase family CPB_RS00135 PF00753 Metallo-beta-lactamase superfamily CPB_RS00145 PF00004 ATPase family associated with various cellular activities (AAA) CPB_RS00145 PF05362 Lon protease (S16) C-terminal proteolytic domain CPB_RS00145 PF02190 ATP-dependent protease La (LON) substrate-binding domain CPB_RS00160 PF00814 Glycoprotease family CPB_RS00165 PF01165 Ribosomal protein S21 CPB_RS00170 PF00226 DnaJ domain CPB_RS00170 PF01556 DnaJ C terminal domain CPB_RS00170 PF00684 DnaJ central domain CPB_RS00175 PF02779 Transketolase, pyrimidine binding domain CPB_RS00175 PF02780 Transketolase, C-terminal domain CPB_RS00195 PF00381 PTS HPr component phosphorylation site CPB_RS00200 PF02896 PEP-utilising enzyme, TIM barrel domain CPB_RS00200 PF05524 PEP-utilising enzyme, N-terminal CPB_RS00200 PF00391 PEP-utilising enzyme, mobile domain CPB_RS00205 PF02575 YbaB/EbfC DNA-binding family CPB_RS00210 PF12169 DNA polymerase III subunits gamma and tau domain III CPB_RS00235 PF07698 7TM receptor with intracellular HD hydrolase CPB_RS00235 PF01966 HD domain CPB_RS00235 PF07697 7TM-HD extracellular CPB_RS00255 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CPB_RS00260 PF18073 Rubredoxin metal binding domain CPB_RS00265 PF14622 Ribonuclease-III-like CPB_RS00265 PF00035 Double-stranded RNA binding motif CPB_RS00275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPB_RS00275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPB_RS00275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPB_RS00275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPB_RS00280 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPB_RS00280 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPB_RS00285 PF01039 Carboxyl transferase domain CPB_RS00285 PF17848 Acetyl-coA carboxylase zinc finger domain CPB_RS00290 PF00692 dUTPase CPB_RS00295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPB_RS00300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPB_RS00360 PF01176 Translation initiation factor 1A / IF-1 CPB_RS00370 PF00009 Elongation factor Tu GTP binding domain CPB_RS00370 PF03144 Elongation factor Tu domain 2 CPB_RS00370 PF03143 Elongation factor Tu C-terminal domain CPB_RS00385 PF02357 Transcription termination factor nusG CPB_RS00390 PF00298 Ribosomal protein L11, RNA binding domain CPB_RS00390 PF03946 Ribosomal protein L11, N-terminal domain CPB_RS00395 PF00687 Ribosomal protein L1p/L10e family CPB_RS00400 PF00466 Ribosomal protein L10 CPB_RS00405 PF16320 Ribosomal protein L7/L12 dimerisation domain CPB_RS00405 PF00542 Ribosomal protein L7/L12 C-terminal domain CPB_RS00410 PF04560 RNA polymerase Rpb2, domain 7 CPB_RS00410 PF00562 RNA polymerase Rpb2, domain 6 CPB_RS00410 PF10385 RNA polymerase beta subunit external 1 domain CPB_RS00410 PF04563 RNA polymerase beta subunit CPB_RS00410 PF04565 RNA polymerase Rpb2, domain 3 CPB_RS00410 PF04561 RNA polymerase Rpb2, domain 2 CPB_RS00415 PF04997 RNA polymerase Rpb1, domain 1 CPB_RS00415 PF00623 RNA polymerase Rpb1, domain 2 CPB_RS00415 PF04998 RNA polymerase Rpb1, domain 5 CPB_RS00415 PF05000 RNA polymerase Rpb1, domain 4 CPB_RS00415 PF04983 RNA polymerase Rpb1, domain 3 CPB_RS00420 PF00923 Transaldolase/Fructose-6-phosphate aldolase CPB_RS00435 PF06188 HrpE/YscL/FliH and V-type ATPase subunit E CPB_RS00440 PF10962 Protein of unknown function (DUF2764) CPB_RS00445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPB_RS00445 PF16886 ATPsynthase alpha/beta subunit N-term extension CPB_RS00445 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPB_RS00450 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPB_RS00450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPB_RS00455 PF01813 ATP synthase subunit D CPB_RS00475 PF00133 tRNA synthetases class I (I, L, M and V) CPB_RS00475 PF08264 Anticodon-binding domain of tRNA CPB_RS00480 PF00069 Protein kinase domain CPB_RS00485 PF17755 UvrA DNA-binding domain CPB_RS00485 PF17760 UvrA interaction domain CPB_RS00490 PF00224 Pyruvate kinase, barrel domain CPB_RS00490 PF02887 Pyruvate kinase, alpha/beta domain CPB_RS00495 PF03279 Bacterial lipid A biosynthesis acyltransferase CPB_RS00510 PF02457 DisA bacterial checkpoint controller nucleotide-binding CPB_RS00510 PF10372 Bacterial membrane-spanning protein N-terminus CPB_RS00515 PF01654 Cytochrome bd terminal oxidase subunit I CPB_RS00520 PF02322 Cytochrome bd terminal oxidase subunit II CPB_RS00535 PF13638 PIN domain CPB_RS00535 PF02562 PhoH-like protein CPB_RS00550 PF00133 tRNA synthetases class I (I, L, M and V) CPB_RS00550 PF08264 Anticodon-binding domain of tRNA CPB_RS00555 PF10502 Signal peptidase, peptidase S26 CPB_RS00565 PF01197 Ribosomal protein L31 CPB_RS00570 PF03462 PCRF domain CPB_RS00570 PF00472 RF-1 domain CPB_RS00575 PF05175 Methyltransferase small domain CPB_RS00575 PF17827 PrmC N-terminal domain CPB_RS00580 PF00448 SRP54-type protein, GTPase domain CPB_RS00580 PF02978 Signal peptide binding domain CPB_RS00580 PF02881 SRP54-type protein, helical bundle domain CPB_RS00585 PF00886 Ribosomal protein S16 CPB_RS00590 PF01746 tRNA (Guanine-1)-methyltransferase CPB_RS00595 PF01245 Ribosomal protein L19 CPB_RS00600 PF01351 Ribonuclease HII CPB_RS00605 PF00625 Guanylate kinase CPB_RS00615 PF08264 Anticodon-binding domain of tRNA CPB_RS00615 PF09334 tRNA synthetases class I (M) CPB_RS00620 PF14490 Helix-hairpin-helix containing domain CPB_RS00620 PF13538 UvrD-like helicase C-terminal domain CPB_RS00620 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CPB_RS00640 PF00892 EamA-like transporter family CPB_RS00645 PF09825 Biotin-protein ligase, N terminal CPB_RS00675 PF00118 TCP-1/cpn60 chaperonin family CPB_RS00680 PF00166 Chaperonin 10 Kd subunit CPB_RS00685 PF01432 Peptidase family M3 CPB_RS00685 PF08439 Oligopeptidase F CPB_RS00690 PF01784 NIF3 (NGG1p interacting factor 3) CPB_RS00695 PF00202 Aminotransferase class-III CPB_RS00700 PF02622 Uncharacterized ACR, COG1678 CPB_RS00710 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPB_RS00720 PF01717 Cobalamin-independent synthase, Catalytic domain CPB_RS00725 PF10431 C-terminal, D2-small domain, of ClpB protein CPB_RS00725 PF02861 Clp amino terminal domain, pathogenicity island component CPB_RS00725 PF17871 AAA lid domain CPB_RS00725 PF00004 ATPase family associated with various cellular activities (AAA) CPB_RS00725 PF07724 AAA domain (Cdc48 subfamily) CPB_RS00745 PF03781 Sulfatase-modifying factor enzyme 1 CPB_RS00750 PF00533 BRCA1 C Terminus (BRCT) domain CPB_RS00750 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CPB_RS00750 PF03120 NAD-dependent DNA ligase OB-fold domain CPB_RS00750 PF12826 Helix-hairpin-helix motif CPB_RS00750 PF01653 NAD-dependent DNA ligase adenylation domain CPB_RS00760 PF01494 FAD binding domain CPB_RS00770 PF00133 tRNA synthetases class I (I, L, M and V) CPB_RS00770 PF13603 Leucyl-tRNA synthetase, Domain 2 CPB_RS00770 PF09334 tRNA synthetases class I (M) CPB_RS00770 PF08264 Anticodon-binding domain of tRNA CPB_RS00775 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CPB_RS00815 PF00365 Phosphofructokinase CPB_RS00865 PF00962 Adenosine/AMP deaminase CPB_RS00870 PF00117 Glutamine amidotransferase class-I CPB_RS00870 PF00958 GMP synthase C terminal domain CPB_RS00925 PF00289 Biotin carboxylase, N-terminal domain CPB_RS00925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPB_RS00925 PF02785 Biotin carboxylase C-terminal domain CPB_RS00930 PF00364 Biotin-requiring enzyme CPB_RS00935 PF01132 Elongation factor P (EF-P) OB domain CPB_RS00935 PF08207 Elongation factor P (EF-P) KOW-like domain CPB_RS00935 PF09285 Elongation factor P, C-terminal CPB_RS00940 PF00834 Ribulose-phosphate 3 epimerase family CPB_RS00955 PF03631 Virulence factor BrkB CPB_RS00970 PF00005 ABC transporter CPB_RS00975 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS00980 PF02863 Arginine repressor, C-terminal domain CPB_RS00980 PF01316 Arginine repressor, DNA binding domain CPB_RS00985 PF00814 Glycoprotease family CPB_RS00990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPB_RS00995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPB_RS01000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPB_RS01005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPB_RS01010 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS01015 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS01015 PF12911 N-terminal TM domain of oligopeptide transport permease C CPB_RS01020 PF00005 ABC transporter CPB_RS01020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPB_RS01025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPB_RS01025 PF00005 ABC transporter CPB_RS01045 PF06685 Protein of unknown function (DUF1186) CPB_RS01050 PF00939 Sodium:sulfate symporter transmembrane region CPB_RS01055 PF00365 Phosphofructokinase CPB_RS01105 PF01702 Queuine tRNA-ribosyltransferase CPB_RS01145 PF02600 Disulfide bond formation protein DsbB CPB_RS01165 PF00005 ABC transporter CPB_RS01195 PF02348 Cytidylyltransferase CPB_RS01200 PF00117 Glutamine amidotransferase class-I CPB_RS01200 PF06418 CTP synthase N-terminus CPB_RS01205 PF03652 Holliday junction resolvase CPB_RS01210 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CPB_RS01210 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CPB_RS01215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CPB_RS01250 PF00380 Ribosomal protein S9/S16 CPB_RS01255 PF00572 Ribosomal protein L13 CPB_RS01260 PF00005 ABC transporter CPB_RS01265 PF12704 MacB-like periplasmic core domain CPB_RS01265 PF02687 FtsX-like permease family CPB_RS01270 PF00471 Ribosomal protein L33 CPB_RS01275 PF00919 Uncharacterized protein family UPF0004 CPB_RS01275 PF18693 TRAM domain CPB_RS01275 PF04055 Radical SAM superfamily CPB_RS01330 PF07516 SecA Wing and Scaffold domain CPB_RS01330 PF01043 SecA preprotein cross-linking domain CPB_RS01330 PF07517 SecA DEAD-like domain CPB_RS01330 PF02810 SEC-C motif CPB_RS01335 PF01171 PP-loop family CPB_RS01340 PF01975 Survival protein SurE CPB_RS01355 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CPB_RS01355 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CPB_RS01360 PF02441 Flavoprotein CPB_RS01365 PF01040 UbiA prenyltransferase family CPB_RS01390 PF01300 Telomere recombination CPB_RS01405 PF02223 Thymidylate kinase CPB_RS01410 PF03989 DNA gyrase C-terminal domain, beta-propeller CPB_RS01410 PF00521 DNA gyrase/topoisomerase IV, subunit A CPB_RS01415 PF00986 DNA gyrase B subunit, carboxyl terminus CPB_RS01415 PF00204 DNA gyrase B CPB_RS01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPB_RS01415 PF01751 Toprim domain CPB_RS01430 PF03180 NLPA lipoprotein CPB_RS01435 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS01440 PF09383 NIL domain CPB_RS01440 PF00005 ABC transporter CPB_RS01445 PF01791 DeoC/LacD family aldolase CPB_RS01450 PF13520 Amino acid permease CPB_RS01470 PF01769 Divalent cation transporter CPB_RS01470 PF00571 CBS domain CPB_RS01470 PF03448 MgtE intracellular N domain CPB_RS01485 PF00375 Sodium:dicarboxylate symporter family CPB_RS01490 PF00209 Sodium:neurotransmitter symporter family CPB_RS01515 PF00550 Phosphopantetheine attachment site CPB_RS01525 PF00698 Acyl transferase domain CPB_RS01530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPB_RS01530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPB_RS01535 PF13662 Toprim domain CPB_RS01540 PF07244 Surface antigen variable number repeat CPB_RS01540 PF01103 Surface antigen CPB_RS01545 PF03938 Outer membrane protein (OmpH-like) CPB_RS01550 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CPB_RS01550 PF14602 Hexapeptide repeat of succinyl-transferase CPB_RS01550 PF00132 Bacterial transferase hexapeptide (six repeats) CPB_RS01560 PF00676 Dehydrogenase E1 component CPB_RS01565 PF02780 Transketolase, C-terminal domain CPB_RS01565 PF00364 Biotin-requiring enzyme CPB_RS01565 PF02779 Transketolase, pyrimidine binding domain CPB_RS01570 PF02817 e3 binding domain CPB_RS01570 PF00364 Biotin-requiring enzyme CPB_RS01570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPB_RS01575 PF00343 Carbohydrate phosphorylase CPB_RS01585 PF00308 Bacterial dnaA protein CPB_RS01585 PF08299 Bacterial dnaA protein helix-turn-helix CPB_RS01590 PF02096 60Kd inner membrane protein CPB_RS01595 PF01790 Prolipoprotein diacylglyceryl transferase CPB_RS01605 PF01648 4'-phosphopantetheinyl transferase superfamily CPB_RS01610 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPB_RS01615 PF00575 S1 RNA binding domain CPB_RS01620 PF08529 NusA N-terminal domain CPB_RS01620 PF00575 S1 RNA binding domain CPB_RS01620 PF13184 NusA-like KH domain CPB_RS01625 PF04760 Translation initiation factor IF-2, N-terminal region CPB_RS01625 PF11987 Translation-initiation factor 2 CPB_RS01625 PF00009 Elongation factor Tu GTP binding domain CPB_RS01630 PF02033 Ribosome-binding factor A CPB_RS01635 PF16198 tRNA pseudouridylate synthase B C-terminal domain CPB_RS01635 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPB_RS01640 PF01687 Riboflavin kinase CPB_RS01640 PF06574 FAD synthetase CPB_RS01645 PF06071 Protein of unknown function (DUF933) CPB_RS01645 PF01926 50S ribosome-binding GTPase CPB_RS01650 PF01312 FlhB HrpN YscU SpaS Family CPB_RS01655 PF00771 FHIPEP family CPB_RS01670 PF02446 4-alpha-glucanotransferase CPB_RS01675 PF00830 Ribosomal L28 family CPB_RS01680 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CPB_RS01705 PF17455 Late transcription unit B CPB_RS01715 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPB_RS01715 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPB_RS01720 PF02424 ApbE family CPB_RS01725 PF01668 SmpB protein CPB_RS01730 PF00712 DNA polymerase III beta subunit, N-terminal domain CPB_RS01730 PF02767 DNA polymerase III beta subunit, central domain CPB_RS01730 PF02768 DNA polymerase III beta subunit, C-terminal domain CPB_RS01745 PF02163 Peptidase family M50 CPB_RS01750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CPB_RS01750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CPB_RS01750 PF13288 DXP reductoisomerase C-terminal domain CPB_RS01755 PF00950 ABC 3 transport family CPB_RS01760 PF02742 Iron dependent repressor, metal binding and dimerisation domain CPB_RS01760 PF00950 ABC 3 transport family CPB_RS01765 PF00005 ABC transporter CPB_RS01770 PF01297 Zinc-uptake complex component A periplasmic CPB_RS01785 PF03219 TLC ATP/ADP transporter CPB_RS01825 PF00009 Elongation factor Tu GTP binding domain CPB_RS01825 PF06421 GTP-binding protein LepA C-terminus CPB_RS01825 PF03144 Elongation factor Tu domain 2 CPB_RS01825 PF00679 Elongation factor G C-terminus CPB_RS01830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPB_RS01830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CPB_RS01835 PF01479 S4 domain CPB_RS01835 PF00579 tRNA synthetases class I (W and Y) CPB_RS01845 PF04545 Sigma-70, region 4 CPB_RS01845 PF04539 Sigma-70 region 3 CPB_RS01845 PF04542 Sigma-70 region 2 CPB_RS01850 PF00771 FHIPEP family CPB_RS01860 PF00111 2Fe-2S iron-sulfur cluster binding domain CPB_RS01905 PF04551 GcpE protein CPB_RS01910 PF02578 Multi-copper polyphenol oxidoreductase laccase CPB_RS01925 PF02817 e3 binding domain CPB_RS01925 PF00364 Biotin-requiring enzyme CPB_RS01925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPB_RS01930 PF16078 2-oxoglutarate dehydrogenase N-terminus CPB_RS01930 PF16870 2-oxoglutarate dehydrogenase C-terminal CPB_RS01930 PF00676 Dehydrogenase E1 component CPB_RS01930 PF02779 Transketolase, pyrimidine binding domain CPB_RS01940 PF06969 HemN C-terminal domain CPB_RS01940 PF04055 Radical SAM superfamily CPB_RS01950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPB_RS01960 PF07382 Histone H1-like nucleoprotein HC2 CPB_RS01965 PF02789 Cytosol aminopeptidase family, N-terminal domain CPB_RS01965 PF00883 Cytosol aminopeptidase family, catalytic domain CPB_RS01970 PF00436 Single-strand binding protein family CPB_RS01980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CPB_RS01980 PF00128 Alpha amylase, catalytic domain CPB_RS01985 PF08486 Stage II sporulation protein CPB_RS01990 PF05491 RuvB C-terminal winged helix domain CPB_RS01990 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPB_RS01990 PF17864 RuvB AAA lid domain CPB_RS02000 PF00692 dUTPase CPB_RS02010 PF00571 CBS domain CPB_RS02010 PF01595 Cyclin M transmembrane N-terminal domain CPB_RS02010 PF03471 Transporter associated domain CPB_RS02020 PF00266 Aminotransferase class-V CPB_RS02050 PF14815 NUDIX domain CPB_RS02050 PF00730 HhH-GPD superfamily base excision DNA repair protein CPB_RS02050 PF00633 Helix-hairpin-helix motif CPB_RS02055 PF01479 S4 domain CPB_RS02055 PF00849 RNA pseudouridylate synthase CPB_RS02095 PF02621 Menaquinone biosynthesis CPB_RS02105 PF00005 ABC transporter CPB_RS02105 PF00664 ABC transporter transmembrane region CPB_RS02110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPB_RS02120 PF00216 Bacterial DNA-binding protein CPB_RS02130 PF01520 N-acetylmuramoyl-L-alanine amidase CPB_RS02130 PF08239 Bacterial SH3 domain CPB_RS02135 PF08245 Mur ligase middle domain CPB_RS02135 PF01225 Mur ligase family, catalytic domain CPB_RS02135 PF02875 Mur ligase family, glutamate ligase domain CPB_RS02140 PF03717 Penicillin-binding Protein dimerisation domain CPB_RS02140 PF00905 Penicillin binding protein transpeptidase domain CPB_RS02150 PF01795 MraW methylase family CPB_RS02155 PF17377 Family of unknown function (DUF5399) CPB_RS02165 PF08299 Bacterial dnaA protein helix-turn-helix CPB_RS02165 PF00308 Bacterial dnaA protein CPB_RS02165 PF11638 DnaA N-terminal domain CPB_RS02180 PF03116 NQR2, RnfD, RnfE family CPB_RS02185 PF04205 FMN-binding domain CPB_RS02190 PF02508 Rnf-Nqr subunit, membrane protein CPB_RS02195 PF02508 Rnf-Nqr subunit, membrane protein CPB_RS02210 PF01597 Glycine cleavage H-protein CPB_RS02230 PF00004 ATPase family associated with various cellular activities (AAA) CPB_RS02230 PF17871 AAA lid domain CPB_RS02230 PF07724 AAA domain (Cdc48 subfamily) CPB_RS02230 PF10431 C-terminal, D2-small domain, of ClpB protein CPB_RS02230 PF02861 Clp amino terminal domain, pathogenicity island component CPB_RS02255 PF17459 Family of unknown function (DUF5422) CPB_RS02260 PF17461 Family of unknown function (DUF5423) CPB_RS02265 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02265 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02270 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02270 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02275 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02275 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02280 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02280 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02285 PF01717 Cobalamin-independent synthase, Catalytic domain CPB_RS02290 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02290 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02295 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02300 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02305 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02305 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02310 PF03797 Autotransporter beta-domain CPB_RS02310 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02310 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02365 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02365 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02370 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02370 PF03797 Autotransporter beta-domain CPB_RS02375 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02375 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02380 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02380 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02385 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02385 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02390 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02390 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02390 PF03797 Autotransporter beta-domain CPB_RS02410 PF02806 Alpha amylase, C-terminal all-beta domain CPB_RS02410 PF00128 Alpha amylase, catalytic domain CPB_RS02410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CPB_RS02420 PF04055 Radical SAM superfamily CPB_RS02420 PF00919 Uncharacterized protein family UPF0004 CPB_RS02425 PF16360 GTP-binding GTPase Middle Region CPB_RS02425 PF13167 GTP-binding GTPase N-terminal CPB_RS02425 PF01926 50S ribosome-binding GTPase CPB_RS02430 PF03099 Biotin/lipoate A/B protein ligase family CPB_RS02430 PF12706 Beta-lactamase superfamily domain CPB_RS02445 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPB_RS02455 PF00793 DAHP synthetase I family CPB_RS02455 PF01817 Chorismate mutase type II CPB_RS02475 PF01230 HIT domain CPB_RS02480 PF03690 Uncharacterised protein family (UPF0160) CPB_RS02510 PF00155 Aminotransferase class I and II CPB_RS02520 PF02594 Uncharacterised ACR, YggU family COG1872 CPB_RS02535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPB_RS02535 PF04073 Aminoacyl-tRNA editing domain CPB_RS02535 PF03129 Anticodon binding domain CPB_RS02540 PF01628 HrcA protein C terminal domain CPB_RS02545 PF01025 GrpE CPB_RS02550 PF00012 Hsp70 protein CPB_RS02555 PF00773 RNB domain CPB_RS02555 PF08206 Ribonuclease B OB domain CPB_RS02560 PF02245 Methylpurine-DNA glycosylase (MPG) CPB_RS02580 PF02130 Uncharacterized protein family UPF0054 CPB_RS02585 PF03471 Transporter associated domain CPB_RS02585 PF00571 CBS domain CPB_RS02590 PF01740 STAS domain CPB_RS02595 PF12228 Protein of unknown function (DUF3604) CPB_RS02600 PF04055 Radical SAM superfamily CPB_RS02610 PF01209 ubiE/COQ5 methyltransferase family CPB_RS02625 PF03682 Uncharacterised protein family (UPF0158) CPB_RS02630 PF01678 Diaminopimelate epimerase CPB_RS02635 PF00574 Clp protease CPB_RS02640 PF00464 Serine hydroxymethyltransferase CPB_RS02665 PF00571 CBS domain CPB_RS02665 PF01380 SIS domain CPB_RS02670 PF02817 e3 binding domain CPB_RS02670 PF00364 Biotin-requiring enzyme CPB_RS02670 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPB_RS02675 PF00375 Sodium:dicarboxylate symporter family CPB_RS02680 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CPB_RS02685 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPB_RS02685 PF00588 SpoU rRNA Methylase family CPB_RS02690 PF01170 Putative RNA methylase family UPF0020 CPB_RS02690 PF02926 THUMP domain CPB_RS02690 PF10672 S-adenosylmethionine-dependent methyltransferase CPB_RS02695 PF00677 Lumazine binding domain CPB_RS02700 PF03477 ATP cone domain CPB_RS02705 PF01258 Prokaryotic dksA/traR C4-type zinc finger CPB_RS02710 PF01252 Signal peptidase (SPase) II CPB_RS02715 PF01235 Sodium:alanine symporter family CPB_RS02730 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02730 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02735 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPB_RS02735 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS02735 PF03797 Autotransporter beta-domain CPB_RS02745 PF01297 Zinc-uptake complex component A periplasmic CPB_RS02750 PF00005 ABC transporter CPB_RS02755 PF00950 ABC 3 transport family CPB_RS02760 PF01018 GTP1/OBG CPB_RS02760 PF01926 50S ribosome-binding GTPase CPB_RS02765 PF01016 Ribosomal L27 protein CPB_RS02770 PF00829 Ribosomal prokaryotic L21 protein CPB_RS02780 PF02542 YgbB family CPB_RS02785 PF00667 FAD binding domain CPB_RS02785 PF00258 Flavodoxin CPB_RS02785 PF00175 Oxidoreductase NAD-binding domain CPB_RS02790 PF00338 Ribosomal protein S10p/S20e CPB_RS02795 PF03144 Elongation factor Tu domain 2 CPB_RS02795 PF00009 Elongation factor Tu GTP binding domain CPB_RS02795 PF03764 Elongation factor G, domain IV CPB_RS02795 PF14492 Elongation Factor G, domain II CPB_RS02795 PF00679 Elongation factor G C-terminus CPB_RS02800 PF00177 Ribosomal protein S7p/S5e CPB_RS02805 PF00164 Ribosomal protein S12/S23 CPB_RS02820 PF03572 Peptidase family S41 CPB_RS02820 PF00595 PDZ domain CPB_RS02820 PF11818 C-terminal domain of tail specific protease (DUF3340) CPB_RS02820 PF17804 Tail specific protease N-terminal domain CPB_RS02825 PF05745 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) CPB_RS02830 PF03504 Chlamydia cysteine-rich outer membrane protein 6 CPB_RS02830 PF01345 Domain of unknown function DUF11 CPB_RS02835 PF03503 Chlamydia cysteine-rich outer membrane protein 3 CPB_RS02845 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPB_RS02850 PF12728 Helix-turn-helix domain CPB_RS02860 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CPB_RS02860 PF17768 RecJ OB domain CPB_RS02860 PF02272 DHHA1 domain CPB_RS02860 PF01368 DHH family CPB_RS02865 PF07549 SecD/SecF GG Motif CPB_RS02865 PF02355 Protein export membrane protein CPB_RS02875 PF01255 Putative undecaprenyl diphosphate synthase CPB_RS02885 PF02224 Cytidylate kinase CPB_RS02895 PF05746 DALR anticodon binding domain CPB_RS02895 PF03485 Arginyl tRNA synthetase N terminal domain CPB_RS02895 PF00750 tRNA synthetases class I (R) CPB_RS02900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPB_RS02910 PF01709 Transcriptional regulator CPB_RS02920 PF00583 Acetyltransferase (GNAT) family CPB_RS02935 PF00149 Calcineurin-like phosphoesterase CPB_RS02940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CPB_RS02945 PF01416 tRNA pseudouridine synthase CPB_RS02950 PF13419 Haloacid dehalogenase-like hydrolase CPB_RS02970 PF00512 His Kinase A (phospho-acceptor) domain CPB_RS02970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPB_RS02980 PF00072 Response regulator receiver domain CPB_RS02980 PF02954 Bacterial regulatory protein, Fis family CPB_RS02980 PF00158 Sigma-54 interaction domain CPB_RS03000 PF11967 Recombination protein O N terminal CPB_RS03000 PF02565 Recombination protein O C terminal CPB_RS03020 PF01809 Putative membrane protein insertion efficiency factor CPB_RS03025 PF01476 LysM domain CPB_RS03030 PF03483 B3/4 domain CPB_RS03030 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CPB_RS03030 PF01588 Putative tRNA binding domain CPB_RS03030 PF03484 tRNA synthetase B5 domain CPB_RS03030 PF03147 Ferredoxin-fold anticodon binding domain CPB_RS03045 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS03045 PF12911 N-terminal TM domain of oligopeptide transport permease C CPB_RS03050 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS03080 PF00762 Ferrochelatase CPB_RS03100 PF00483 Nucleotidyl transferase CPB_RS03105 PF00156 Phosphoribosyl transferase domain CPB_RS03115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPB_RS03115 PF07498 Rho termination factor, N-terminal domain CPB_RS03115 PF07497 Rho termination factor, RNA-binding domain CPB_RS03120 PF01121 Dephospho-CoA kinase CPB_RS03125 PF01367 5'-3' exonuclease, C-terminal SAM fold CPB_RS03125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPB_RS03125 PF00476 DNA polymerase family A CPB_RS03130 PF01343 Peptidase family S49 CPB_RS03135 PF03219 TLC ATP/ADP transporter CPB_RS03140 PF01066 CDP-alcohol phosphatidyltransferase CPB_RS03150 PF03796 DnaB-like helicase C terminal domain CPB_RS03150 PF00772 DnaB-like helicase N terminal domain CPB_RS03155 PF01134 Glucose inhibited division protein A CPB_RS03155 PF13932 GidA associated domain CPB_RS03160 PF03099 Biotin/lipoate A/B protein ligase family CPB_RS03160 PF10437 Bacterial lipoate protein ligase C-terminus CPB_RS03165 PF00334 Nucleoside diphosphate kinase CPB_RS03170 PF01330 RuvA N terminal domain CPB_RS03175 PF02075 Crossover junction endodeoxyribonuclease RuvC CPB_RS03195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPB_RS03195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPB_RS03200 PF01196 Ribosomal protein L17 CPB_RS03205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CPB_RS03205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CPB_RS03205 PF01000 RNA polymerase Rpb3/RpoA insert domain CPB_RS03210 PF00411 Ribosomal protein S11 CPB_RS03215 PF00416 Ribosomal protein S13/S18 CPB_RS03220 PF00344 SecY translocase CPB_RS03225 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CPB_RS03230 PF03719 Ribosomal protein S5, C-terminal domain CPB_RS03230 PF00333 Ribosomal protein S5, N-terminal domain CPB_RS03235 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CPB_RS03240 PF00347 Ribosomal protein L6 CPB_RS03245 PF00410 Ribosomal protein S8 CPB_RS03250 PF00281 Ribosomal protein L5 CPB_RS03250 PF00673 ribosomal L5P family C-terminus CPB_RS03255 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CPB_RS03255 PF00467 KOW motif CPB_RS03260 PF00238 Ribosomal protein L14p/L23e CPB_RS03265 PF00366 Ribosomal protein S17 CPB_RS03270 PF00831 Ribosomal L29 protein CPB_RS03275 PF00252 Ribosomal protein L16p/L10e CPB_RS03280 PF00189 Ribosomal protein S3, C-terminal domain CPB_RS03280 PF07650 KH domain CPB_RS03285 PF00237 Ribosomal protein L22p/L17e CPB_RS03290 PF00203 Ribosomal protein S19 CPB_RS03295 PF03947 Ribosomal Proteins L2, C-terminal domain CPB_RS03295 PF00181 Ribosomal Proteins L2, RNA binding domain CPB_RS03300 PF00276 Ribosomal protein L23 CPB_RS03305 PF00573 Ribosomal protein L4/L1 family CPB_RS03310 PF00297 Ribosomal protein L3 CPB_RS03320 PF02911 Formyl transferase, C-terminal domain CPB_RS03320 PF00551 Formyl transferase CPB_RS03325 PF00132 Bacterial transferase hexapeptide (six repeats) CPB_RS03325 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CPB_RS03330 PF07977 FabA-like domain CPB_RS03335 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CPB_RS03340 PF00795 Carbon-nitrogen hydrolase CPB_RS03345 PF03061 Thioesterase superfamily CPB_RS03350 PF00929 Exonuclease CPB_RS03360 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPB_RS03365 PF10915 Protein of unknown function (DUF2709) CPB_RS03375 PF00085 Thioredoxin CPB_RS03380 PF00588 SpoU rRNA Methylase family CPB_RS03385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CPB_RS03385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPB_RS03390 PF00152 tRNA synthetases class II (D, K and N) CPB_RS03390 PF02938 GAD domain CPB_RS03390 PF01336 OB-fold nucleic acid binding domain CPB_RS03395 PF03129 Anticodon binding domain CPB_RS03395 PF13393 Histidyl-tRNA synthetase CPB_RS03405 PF07690 Major Facilitator Superfamily CPB_RS03410 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPB_RS03410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPB_RS03410 PF14579 Helix-hairpin-helix motif CPB_RS03410 PF02811 PHP domain CPB_RS03430 PF13581 Histidine kinase-like ATPase domain CPB_RS03450 PF01029 NusB family CPB_RS03450 PF01189 16S rRNA methyltransferase RsmB/F CPB_RS03475 PF00162 Phosphoglycerate kinase CPB_RS03480 PF01384 Phosphate transporter family CPB_RS03485 PF01865 Protein of unknown function DUF47 CPB_RS03490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPB_RS03490 PF00005 ABC transporter CPB_RS03495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPB_RS03495 PF00005 ABC transporter CPB_RS03505 PF02195 ParB-like nuclease domain CPB_RS03505 PF17762 HTH domain found in ParB protein CPB_RS03530 PF00266 Aminotransferase class-V CPB_RS03535 PF01458 Uncharacterized protein family (UPF0051) CPB_RS03540 PF00005 ABC transporter CPB_RS03545 PF01458 Uncharacterized protein family (UPF0051) CPB_RS03555 PF00905 Penicillin binding protein transpeptidase domain CPB_RS03560 PF01308 Chlamydia major outer membrane protein CPB_RS03570 PF00318 Ribosomal protein S2 CPB_RS03575 PF00889 Elongation factor TS CPB_RS03580 PF00696 Amino acid kinase family CPB_RS03585 PF01765 Ribosome recycling factor CPB_RS03600 PF02151 UvrB/uvrC motif CPB_RS03605 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CPB_RS03615 PF03958 Bacterial type II/III secretion system short domain CPB_RS03615 PF00263 Bacterial type II and III secretion system protein CPB_RS03620 PF00069 Protein kinase domain CPB_RS03620 PF03793 PASTA domain CPB_RS03625 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CPB_RS03630 PF17458 Family of unknown function (DUF5421) CPB_RS03640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPB_RS03640 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPB_RS03640 PF18269 T3SS EscN ATPase C-terminal domain CPB_RS03655 PF17401 Family of unknown function (DUF5407) CPB_RS03660 PF17376 Family of unknown function (DUF5398) CPB_RS03670 PF05932 Tir chaperone protein (CesT) family CPB_RS03675 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CPB_RS03680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPB_RS03680 PF00986 DNA gyrase B subunit, carboxyl terminus CPB_RS03680 PF01751 Toprim domain CPB_RS03680 PF00204 DNA gyrase B CPB_RS03685 PF00521 DNA gyrase/topoisomerase IV, subunit A CPB_RS03700 PF00849 RNA pseudouridylate synthase CPB_RS03700 PF01479 S4 domain CPB_RS03720 PF00793 DAHP synthetase I family CPB_RS03730 PF00005 ABC transporter CPB_RS03765 PF03023 Lipid II flippase MurJ CPB_RS03775 PF01261 Xylose isomerase-like TIM barrel CPB_RS03780 PF00163 Ribosomal protein S4/S9 N-terminal domain CPB_RS03780 PF01479 S4 domain CPB_RS03785 PF00581 Rhodanese-like domain CPB_RS03785 PF12368 Rhodanase C-terminal CPB_RS03785 PF17773 UPF0176 acylphosphatase like domain CPB_RS03790 PF00485 Phosphoribulokinase / Uridine kinase family CPB_RS03795 PF07690 Major Facilitator Superfamily CPB_RS03805 PF00580 UvrD/REP helicase N-terminal domain CPB_RS03805 PF13361 UvrD-like helicase C-terminal domain CPB_RS03815 PF00155 Aminotransferase class I and II CPB_RS03835 PF11973 NQRA C-terminal domain CPB_RS03835 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CPB_RS03840 PF00490 Delta-aminolevulinic acid dehydratase CPB_RS03850 PF02511 Thymidylate synthase complementing protein CPB_RS03865 PF00348 Polyprenyl synthetase CPB_RS03870 PF12804 MobA-like NTP transferase domain CPB_RS03870 PF00132 Bacterial transferase hexapeptide (six repeats) CPB_RS03870 PF14602 Hexapeptide repeat of succinyl-transferase CPB_RS03875 PF00486 Transcriptional regulatory protein, C terminal CPB_RS03885 PF13538 UvrD-like helicase C-terminal domain CPB_RS03895 PF01649 Ribosomal protein S20 CPB_RS03900 PF06785 Uncharacterised protein family (UPF0242) N-terminus CPB_RS03900 PF18095 UPF0242 C-terminal PAS-like domain CPB_RS03905 PF00140 Sigma-70 factor, region 1.2 CPB_RS03905 PF03979 Sigma-70 factor, region 1.1 CPB_RS03905 PF04539 Sigma-70 region 3 CPB_RS03905 PF04545 Sigma-70, region 4 CPB_RS03905 PF04542 Sigma-70 region 2 CPB_RS03910 PF02152 Dihydroneopterin aldolase CPB_RS03915 PF00809 Pterin binding enzyme CPB_RS03915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CPB_RS03920 PF00186 Dihydrofolate reductase CPB_RS03925 PF00881 Nitroreductase family CPB_RS03925 PF01996 F420-0:Gamma-glutamyl ligase CPB_RS03930 PF03070 TENA/THI-4/PQQC family CPB_RS03935 PF00154 recA bacterial DNA recombination protein CPB_RS03940 PF01812 5-formyltetrahydrofolate cyclo-ligase family CPB_RS03965 PF01207 Dihydrouridine synthase (Dus) CPB_RS03970 PF01396 Topoisomerase DNA binding C4 zinc finger CPB_RS03970 PF01751 Toprim domain CPB_RS03970 PF01131 DNA topoisomerase CPB_RS03980 PF04963 Sigma-54 factor, core binding domain CPB_RS03980 PF00309 Sigma-54 factor, Activator interacting domain (AID) CPB_RS03980 PF04552 Sigma-54, DNA binding domain CPB_RS03985 PF00580 UvrD/REP helicase N-terminal domain CPB_RS03985 PF13361 UvrD-like helicase C-terminal domain CPB_RS03990 PF03167 Uracil DNA glycosylase superfamily CPB_RS04000 PF01725 Ham1 family CPB_RS04010 PF00118 TCP-1/cpn60 chaperonin family CPB_RS04020 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPB_RS04020 PF00578 AhpC/TSA family CPB_RS04030 PF01476 LysM domain CPB_RS04030 PF01551 Peptidase family M23 CPB_RS04035 PF00691 OmpA family CPB_RS04040 PF07676 WD40-like Beta Propeller Repeat CPB_RS04050 PF02472 Biopolymer transport protein ExbD/TolR CPB_RS04055 PF01618 MotA/TolQ/ExbB proton channel family CPB_RS04060 PF02683 Cytochrome C biogenesis protein transmembrane region CPB_RS04060 PF11412 Disulphide bond corrector protein DsbC CPB_RS04065 PF01026 TatD related DNase CPB_RS04075 PF00890 FAD binding domain CPB_RS04075 PF02910 Fumarate reductase flavoprotein C-term CPB_RS04080 PF13183 4Fe-4S dicluster domain CPB_RS04080 PF13085 2Fe-2S iron-sulfur cluster binding domain CPB_RS04130 PF00113 Enolase, C-terminal TIM barrel domain CPB_RS04130 PF03952 Enolase, N-terminal domain CPB_RS04135 PF00271 Helicase conserved C-terminal domain CPB_RS04135 PF04851 Type III restriction enzyme, res subunit CPB_RS04135 PF02151 UvrB/uvrC motif CPB_RS04135 PF12344 Ultra-violet resistance protein B CPB_RS04135 PF17757 UvrB interaction domain CPB_RS04140 PF00579 tRNA synthetases class I (W and Y) CPB_RS04145 PF17435 Family of unknown function (DUF5414) CPB_RS04150 PF03677 Uncharacterised protein family (UPF0137) CPB_RS04155 PF13614 AAA domain CPB_RS04160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPB_RS04160 PF02824 TGS domain CPB_RS04160 PF03129 Anticodon binding domain CPB_RS04160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPB_RS04165 PF00892 EamA-like transporter family CPB_RS04170 PF04888 Secretion system effector C (SseC) like family CPB_RS04190 PF08676 MutL C terminal dimerisation domain CPB_RS04190 PF01119 DNA mismatch repair protein, C-terminal domain CPB_RS04195 PF00557 Metallopeptidase family M24 CPB_RS04195 PF01321 Creatinase/Prolidase N-terminal domain CPB_RS04205 PF03958 Bacterial type II/III secretion system short domain CPB_RS04205 PF00263 Bacterial type II and III secretion system protein CPB_RS04210 PF00437 Type II/IV secretion system protein CPB_RS04215 PF00482 Type II secretion system (T2SS), protein F CPB_RS04220 PF07963 Prokaryotic N-terminal methylation motif CPB_RS04245 PF01311 Bacterial export proteins, family 1 CPB_RS04250 PF01313 Bacterial export proteins, family 3 CPB_RS04255 PF00813 FliP family CPB_RS04260 PF02108 Flagellar assembly protein FliH CPB_RS04270 PF01514 Secretory protein of YscJ/FliF family CPB_RS04290 PF04055 Radical SAM superfamily CPB_RS04295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPB_RS04295 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPB_RS04305 PF00176 SNF2 family N-terminal domain CPB_RS04305 PF00271 Helicase conserved C-terminal domain CPB_RS04305 PF04434 SWIM zinc finger CPB_RS04310 PF05525 Branched-chain amino acid transport protein CPB_RS04315 PF10576 Iron-sulfur binding domain of endonuclease III CPB_RS04315 PF00730 HhH-GPD superfamily base excision DNA repair protein CPB_RS04320 PF12631 MnmE helical domain CPB_RS04320 PF01926 50S ribosome-binding GTPase CPB_RS04320 PF10396 GTP-binding protein TrmE N-terminus CPB_RS04325 PF02666 Phosphatidylserine decarboxylase CPB_RS04340 PF07516 SecA Wing and Scaffold domain CPB_RS04340 PF07517 SecA DEAD-like domain CPB_RS04340 PF01043 SecA preprotein cross-linking domain CPB_RS04350 PF01926 50S ribosome-binding GTPase CPB_RS04350 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPB_RS04355 PF01743 Poly A polymerase head domain CPB_RS04355 PF13735 tRNA nucleotidyltransferase domain 2 putative CPB_RS04355 PF12627 Probable RNA and SrmB- binding site of polymerase A CPB_RS04360 PF10431 C-terminal, D2-small domain, of ClpB protein CPB_RS04360 PF07724 AAA domain (Cdc48 subfamily) CPB_RS04360 PF06689 ClpX C4-type zinc finger CPB_RS04365 PF00574 Clp protease CPB_RS04370 PF05697 Bacterial trigger factor protein (TF) CPB_RS04370 PF05698 Bacterial trigger factor protein (TF) C-terminus CPB_RS04380 PF00271 Helicase conserved C-terminal domain CPB_RS04380 PF00176 SNF2 family N-terminal domain CPB_RS04380 PF04434 SWIM zinc finger CPB_RS04390 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CPB_RS04390 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CPB_RS04410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPB_RS04410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPB_RS04425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPB_RS04425 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPB_RS04425 PF18269 T3SS EscN ATPase C-terminal domain CPB_RS04435 PF14841 FliG middle domain CPB_RS04435 PF01706 FliG C-terminal domain CPB_RS04435 PF14842 FliG N-terminal domain CPB_RS04445 PF00266 Aminotransferase class-V CPB_RS04450 PF00300 Histidine phosphatase superfamily (branch 1) CPB_RS04455 PF01479 S4 domain CPB_RS04455 PF00849 RNA pseudouridylate synthase CPB_RS04465 PF03099 Biotin/lipoate A/B protein ligase family CPB_RS04465 PF02237 Biotin protein ligase C terminal domain CPB_RS04470 PF01098 Cell cycle protein CPB_RS04475 PF00403 Heavy-metal-associated domain CPB_RS04485 PF02403 Seryl-tRNA synthetase N-terminal domain CPB_RS04485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPB_RS04490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPB_RS04490 PF01872 RibD C-terminal domain CPB_RS04495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CPB_RS04495 PF00925 GTP cyclohydrolase II CPB_RS04500 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPB_RS04515 PF01235 Sodium:alanine symporter family CPB_RS04520 PF01161 Phosphatidylethanolamine-binding protein CPB_RS04530 PF00753 Metallo-beta-lactamase superfamily CPB_RS04535 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CPB_RS04535 PF09397 Ftsk gamma domain CPB_RS04535 PF01580 FtsK/SpoIIIE family CPB_RS04535 PF17854 FtsK alpha domain CPB_RS04565 PF00175 Oxidoreductase NAD-binding domain CPB_RS04565 PF00111 2Fe-2S iron-sulfur cluster binding domain CPB_RS04570 PF02699 Preprotein translocase subunit CPB_RS04575 PF05958 tRNA (Uracil-5-)-methyltransferase CPB_RS04580 PF07432 Histone H1-like protein Hc1 CPB_RS04595 PF01593 Flavin containing amine oxidoreductase CPB_RS04600 PF06969 HemN C-terminal domain CPB_RS04600 PF04055 Radical SAM superfamily CPB_RS04605 PF01208 Uroporphyrinogen decarboxylase (URO-D) CPB_RS04610 PF00271 Helicase conserved C-terminal domain CPB_RS04610 PF03461 TRCF domain CPB_RS04610 PF17757 UvrB interaction domain CPB_RS04610 PF00270 DEAD/DEAH box helicase CPB_RS04610 PF02559 CarD-like/TRCF domain CPB_RS04615 PF01411 tRNA synthetases class II (A) CPB_RS04615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPB_RS04615 PF02272 DHHA1 domain CPB_RS04620 PF02780 Transketolase, C-terminal domain CPB_RS04620 PF00456 Transketolase, thiamine diphosphate binding domain CPB_RS04620 PF02779 Transketolase, pyrimidine binding domain CPB_RS04630 PF01132 Elongation factor P (EF-P) OB domain CPB_RS04630 PF08207 Elongation factor P (EF-P) KOW-like domain CPB_RS04630 PF09285 Elongation factor P, C-terminal CPB_RS04645 PF00118 TCP-1/cpn60 chaperonin family CPB_RS04655 PF08245 Mur ligase middle domain CPB_RS04655 PF02875 Mur ligase family, glutamate ligase domain CPB_RS04655 PF01225 Mur ligase family, catalytic domain CPB_RS04660 PF00953 Glycosyl transferase family 4 CPB_RS04665 PF08245 Mur ligase middle domain CPB_RS04665 PF02875 Mur ligase family, glutamate ligase domain CPB_RS04670 PF00877 NlpC/P60 family CPB_RS04670 PF01476 LysM domain CPB_RS04675 PF01098 Cell cycle protein CPB_RS04680 PF04101 Glycosyltransferase family 28 C-terminal domain CPB_RS04680 PF03033 Glycosyltransferase family 28 N-terminal domain CPB_RS04685 PF07478 D-ala D-ala ligase C-terminus CPB_RS04685 PF02875 Mur ligase family, glutamate ligase domain CPB_RS04685 PF08245 Mur ligase middle domain CPB_RS04685 PF01225 Mur ligase family, catalytic domain CPB_RS04685 PF01820 D-ala D-ala ligase N-terminus CPB_RS04715 PF04055 Radical SAM superfamily CPB_RS04740 PF00109 Beta-ketoacyl synthase, N-terminal domain CPB_RS04740 PF02801 Beta-ketoacyl synthase, C-terminal domain CPB_RS04745 PF00293 NUDIX domain CPB_RS04750 PF00719 Inorganic pyrophosphatase CPB_RS04755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPB_RS04755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CPB_RS04760 PF00459 Inositol monophosphatase family CPB_RS04770 PF13193 AMP-binding enzyme C-terminal domain CPB_RS04770 PF00501 AMP-binding enzyme CPB_RS04770 PF01553 Acyltransferase CPB_RS04775 PF00155 Aminotransferase class I and II CPB_RS04780 PF17764 3′ DNA-binding domain (3′BD) CPB_RS04780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPB_RS04780 PF00271 Helicase conserved C-terminal domain CPB_RS04780 PF04851 Type III restriction enzyme, res subunit CPB_RS04780 PF18074 Primosomal protein N C-terminal domain CPB_RS04815 PF00152 tRNA synthetases class II (D, K and N) CPB_RS04815 PF01336 OB-fold nucleic acid binding domain CPB_RS04820 PF09190 DALR domain CPB_RS04820 PF01406 tRNA synthetases class I (C) catalytic domain CPB_RS04830 PF00825 Ribonuclease P CPB_RS04835 PF00468 Ribosomal protein L34 CPB_RS04840 PF00444 Ribosomal protein L36 CPB_RS04845 PF00253 Ribosomal protein S14p/S29e CPB_RS04860 PF01541 GIY-YIG catalytic domain CPB_RS04860 PF08459 UvrC Helix-hairpin-helix N-terminal CPB_RS04865 PF05190 MutS family domain IV CPB_RS04865 PF05192 MutS domain III CPB_RS04865 PF05188 MutS domain II CPB_RS04865 PF01624 MutS domain I CPB_RS04865 PF00488 MutS domain V CPB_RS04870 PF08275 DNA primase catalytic core, N-terminal domain CPB_RS04870 PF01807 CHC2 zinc finger CPB_RS04890 PF02092 Glycyl-tRNA synthetase beta subunit CPB_RS04890 PF02091 Glycyl-tRNA synthetase alpha subunit CPB_RS04895 PF01066 CDP-alcohol phosphatidyltransferase CPB_RS04900 PF00534 Glycosyl transferases group 1 CPB_RS04900 PF08323 Starch synthase catalytic domain CPB_RS04915 PF14693 Ribosomal protein TL5, C-terminal domain CPB_RS04915 PF01386 Ribosomal L25p family CPB_RS04920 PF01195 Peptidyl-tRNA hydrolase CPB_RS04925 PF01250 Ribosomal protein S6 CPB_RS04930 PF01084 Ribosomal protein S18 CPB_RS04935 PF01281 Ribosomal protein L9, N-terminal domain CPB_RS04935 PF03948 Ribosomal protein L9, C-terminal domain CPB_RS04940 PF00288 GHMP kinases N terminal domain CPB_RS04955 PF05193 Peptidase M16 inactive domain CPB_RS04955 PF00675 Insulinase (Peptidase family M16) CPB_RS04965 PF00575 S1 RNA binding domain CPB_RS04965 PF10150 Ribonuclease E/G family CPB_RS04975 PF01783 Ribosomal L32p protein family CPB_RS04980 PF02504 Fatty acid synthesis protein CPB_RS04985 PF03797 Autotransporter beta-domain CPB_RS04985 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS04995 PF02684 Lipid-A-disaccharide synthetase CPB_RS04995 PF07578 Lipid A Biosynthesis N-terminal domain CPB_RS05000 PF12627 Probable RNA and SrmB- binding site of polymerase A CPB_RS05000 PF01743 Poly A polymerase head domain CPB_RS05000 PF12626 Polymerase A arginine-rich C-terminus CPB_RS05005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPB_RS05005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPB_RS05005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPB_RS05005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPB_RS05010 PF01380 SIS domain CPB_RS05015 PF03222 Tryptophan/tyrosine permease family CPB_RS05020 PF01027 Inhibitor of apoptosis-promoting Bax1 CPB_RS05025 PF00448 SRP54-type protein, GTPase domain CPB_RS05030 PF00549 CoA-ligase CPB_RS05030 PF08442 ATP-grasp domain CPB_RS05035 PF02629 CoA binding domain CPB_RS05035 PF00549 CoA-ligase CPB_RS05060 PF13180 PDZ domain CPB_RS05060 PF17820 PDZ domain CPB_RS05065 PF01546 Peptidase family M20/M25/M40 CPB_RS05065 PF07687 Peptidase dimerisation domain CPB_RS05070 PF08367 Peptidase M16C associated CPB_RS05070 PF00675 Insulinase (Peptidase family M16) CPB_RS05070 PF05193 Peptidase M16 inactive domain CPB_RS05075 PF02646 RmuC family CPB_RS05085 PF03477 ATP cone domain CPB_RS05085 PF02867 Ribonucleotide reductase, barrel domain CPB_RS05085 PF00317 Ribonucleotide reductase, all-alpha domain CPB_RS05090 PF00268 Ribonucleotide reductase, small chain CPB_RS05100 PF06962 Putative rRNA methylase CPB_RS05105 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPB_RS05105 PF01565 FAD binding domain CPB_RS05110 PF01029 NusB family CPB_RS05115 PF05198 Translation initiation factor IF-3, N-terminal domain CPB_RS05115 PF00707 Translation initiation factor IF-3, C-terminal domain CPB_RS05120 PF01632 Ribosomal protein L35 CPB_RS05125 PF00453 Ribosomal protein L20 CPB_RS05130 PF01409 tRNA synthetases class II core domain (F) CPB_RS05130 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CPB_RS05155 PF01171 PP-loop family CPB_RS05160 PF01434 Peptidase family M41 CPB_RS05160 PF00004 ATPase family associated with various cellular activities (AAA) CPB_RS05160 PF17862 AAA+ lid domain CPB_RS05165 PF00575 S1 RNA binding domain CPB_RS05165 PF01138 3' exoribonuclease family, domain 1 CPB_RS05165 PF03725 3' exoribonuclease family, domain 2 CPB_RS05165 PF00013 KH domain CPB_RS05165 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CPB_RS05170 PF00312 Ribosomal protein S15 CPB_RS05175 PF14437 MafB19-like deaminase CPB_RS05215 PF02810 SEC-C motif CPB_RS05215 PF00557 Metallopeptidase family M24 CPB_RS05220 PF01914 MarC family integral membrane protein CPB_RS05230 PF00528 Binding-protein-dependent transport system inner membrane component CPB_RS05235 PF10415 Fumarase C C-terminus CPB_RS05235 PF00206 Lyase CPB_RS05240 PF00916 Sulfate permease family CPB_RS05240 PF01740 STAS domain CPB_RS05245 PF03600 Citrate transporter CPB_RS05250 PF03572 Peptidase family S41 CPB_RS05250 PF17816 PDZ domain CPB_RS05255 PF02401 LytB protein CPB_RS05295 PF02899 Phage integrase, N-terminal SAM-like domain CPB_RS05295 PF00589 Phage integrase family CPB_RS05300 PF00342 Phosphoglucose isomerase CPB_RS05305 PF17446 Late transcription unit A CPB_RS05315 PF00056 lactate/malate dehydrogenase, NAD binding domain CPB_RS05315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPB_RS05325 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CPB_RS05325 PF01266 FAD dependent oxidoreductase CPB_RS05330 PF13520 Amino acid permease CPB_RS05335 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) CPB_RS05340 PF04966 Carbohydrate-selective porin, OprB family CPB_RS05345 PF11019 Protein of unknown function (DUF2608) CPB_RS05350 PF01488 Shikimate / quinate 5-dehydrogenase CPB_RS05350 PF08501 Shikimate dehydrogenase substrate binding domain CPB_RS05350 PF01487 Type I 3-dehydroquinase CPB_RS05355 PF01761 3-dehydroquinate synthase CPB_RS05360 PF01264 Chorismate synthase CPB_RS05365 PF01202 Shikimate kinase CPB_RS05370 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPB_RS05380 PF00202 Aminotransferase class-III CPB_RS05390 PF00155 Aminotransferase class I and II CPB_RS05395 PF06968 Biotin and Thiamin Synthesis associated domain CPB_RS05395 PF04055 Radical SAM superfamily CPB_RS05405 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CPB_RS05410 PF01113 Dihydrodipicolinate reductase, N-terminus CPB_RS05410 PF05173 Dihydrodipicolinate reductase, C-terminus CPB_RS05415 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPB_RS05415 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPB_RS05420 PF00696 Amino acid kinase family CPB_RS05425 PF00701 Dihydrodipicolinate synthetase family CPB_RS05460 PF03190 Protein of unknown function, DUF255 CPB_RS05470 PF00398 Ribosomal RNA adenine dimethylase CPB_RS05475 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPB_RS05475 PF02780 Transketolase, C-terminal domain CPB_RS05475 PF02779 Transketolase, pyrimidine binding domain CPB_RS05485 PF02609 Exonuclease VII small subunit CPB_RS05490 PF02601 Exonuclease VII, large subunit CPB_RS05490 PF13742 OB-fold nucleic acid binding domain CPB_RS05495 PF00121 Triosephosphate isomerase CPB_RS05515 PF01327 Polypeptide deformylase CPB_RS05520 PF11858 Domain of unknown function (DUF3378) CPB_RS05520 PF01351 Ribonuclease HII CPB_RS05545 PF11019 Protein of unknown function (DUF2608) CPB_RS05575 PF07548 Chlamydia polymorphic membrane protein middle domain CPB_RS05615 PF03449 Transcription elongation factor, N-terminal CPB_RS05615 PF01272 Transcription elongation factor, GreA/GreB, C-term CPB_RS05635 PF00288 GHMP kinases N terminal domain CPB_RS05645 PF02390 Putative methyltransferase