locus-tag class description CPS0D_RS00005 PF00490 Delta-aminolevulinic acid dehydratase CPS0D_RS00010 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CPS0D_RS00010 PF11973 NQRA C-terminal domain CPS0D_RS00020 PF03449 Transcription elongation factor, N-terminal CPS0D_RS00020 PF01272 Transcription elongation factor, GreA/GreB, C-term CPS0D_RS00030 PF00155 Aminotransferase class I and II CPS0D_RS00040 PF00580 UvrD/REP helicase N-terminal domain CPS0D_RS00040 PF13361 UvrD-like helicase C-terminal domain CPS0D_RS00050 PF07690 Major Facilitator Superfamily CPS0D_RS00055 PF00581 Rhodanese-like domain CPS0D_RS00055 PF12368 Rhodanase C-terminal CPS0D_RS00055 PF17773 UPF0176 acylphosphatase like domain CPS0D_RS00060 PF00163 Ribosomal protein S4/S9 N-terminal domain CPS0D_RS00060 PF01479 S4 domain CPS0D_RS00065 PF01261 Xylose isomerase-like TIM barrel CPS0D_RS00070 PF03023 Lipid II flippase MurJ CPS0D_RS00100 PF00005 ABC transporter CPS0D_RS00110 PF00793 DAHP synthetase I family CPS0D_RS00125 PF01479 S4 domain CPS0D_RS00125 PF00849 RNA pseudouridylate synthase CPS0D_RS00140 PF00521 DNA gyrase/topoisomerase IV, subunit A CPS0D_RS00145 PF00204 DNA gyrase B CPS0D_RS00145 PF00986 DNA gyrase B subunit, carboxyl terminus CPS0D_RS00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPS0D_RS00145 PF01751 Toprim domain CPS0D_RS00150 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CPS0D_RS00155 PF05932 Tir chaperone protein (CesT) family CPS0D_RS00165 PF17376 Family of unknown function (DUF5398) CPS0D_RS00170 PF17401 Family of unknown function (DUF5407) CPS0D_RS00185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPS0D_RS00185 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPS0D_RS00185 PF18269 T3SS EscN ATPase C-terminal domain CPS0D_RS00195 PF17458 Family of unknown function (DUF5421) CPS0D_RS00200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CPS0D_RS00205 PF00069 Protein kinase domain CPS0D_RS00205 PF03793 PASTA domain CPS0D_RS00210 PF03958 Bacterial type II/III secretion system short domain CPS0D_RS00210 PF00263 Bacterial type II and III secretion system protein CPS0D_RS00220 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CPS0D_RS00225 PF02151 UvrB/uvrC motif CPS0D_RS00240 PF01765 Ribosome recycling factor CPS0D_RS00245 PF00696 Amino acid kinase family CPS0D_RS00250 PF00889 Elongation factor TS CPS0D_RS00255 PF00318 Ribosomal protein S2 CPS0D_RS00265 PF01308 Chlamydia major outer membrane protein CPS0D_RS00270 PF00905 Penicillin binding protein transpeptidase domain CPS0D_RS00280 PF01458 Uncharacterized protein family (UPF0051) CPS0D_RS00285 PF00005 ABC transporter CPS0D_RS00290 PF01458 Uncharacterized protein family (UPF0051) CPS0D_RS00295 PF00266 Aminotransferase class-V CPS0D_RS00310 PF17762 HTH domain found in ParB protein CPS0D_RS00310 PF02195 ParB-like nuclease domain CPS0D_RS00315 PF00005 ABC transporter CPS0D_RS00315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPS0D_RS00320 PF00005 ABC transporter CPS0D_RS00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPS0D_RS00325 PF01865 Protein of unknown function DUF47 CPS0D_RS00330 PF01384 Phosphate transporter family CPS0D_RS00335 PF00162 Phosphoglycerate kinase CPS0D_RS00355 PF01029 NusB family CPS0D_RS00355 PF01189 16S rRNA methyltransferase RsmB/F CPS0D_RS00365 PF07943 Penicillin-binding protein 5, C-terminal domain CPS0D_RS00365 PF00768 D-alanyl-D-alanine carboxypeptidase CPS0D_RS00395 PF14579 Helix-hairpin-helix motif CPS0D_RS00395 PF02811 PHP domain CPS0D_RS00395 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPS0D_RS00395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPS0D_RS00400 PF07690 Major Facilitator Superfamily CPS0D_RS00410 PF03129 Anticodon binding domain CPS0D_RS00410 PF13393 Histidyl-tRNA synthetase CPS0D_RS00415 PF02938 GAD domain CPS0D_RS00415 PF00152 tRNA synthetases class II (D, K and N) CPS0D_RS00415 PF01336 OB-fold nucleic acid binding domain CPS0D_RS00420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPS0D_RS00420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CPS0D_RS00425 PF00588 SpoU rRNA Methylase family CPS0D_RS00430 PF00085 Thioredoxin CPS0D_RS00440 PF10915 Protein of unknown function (DUF2709) CPS0D_RS00450 PF00929 Exonuclease CPS0D_RS00455 PF03061 Thioesterase superfamily CPS0D_RS00460 PF00795 Carbon-nitrogen hydrolase CPS0D_RS00465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CPS0D_RS00470 PF07977 FabA-like domain CPS0D_RS00475 PF00132 Bacterial transferase hexapeptide (six repeats) CPS0D_RS00475 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CPS0D_RS00480 PF02911 Formyl transferase, C-terminal domain CPS0D_RS00480 PF00551 Formyl transferase CPS0D_RS00490 PF00297 Ribosomal protein L3 CPS0D_RS00495 PF00573 Ribosomal protein L4/L1 family CPS0D_RS00500 PF00276 Ribosomal protein L23 CPS0D_RS00505 PF03947 Ribosomal Proteins L2, C-terminal domain CPS0D_RS00505 PF00181 Ribosomal Proteins L2, RNA binding domain CPS0D_RS00510 PF00203 Ribosomal protein S19 CPS0D_RS00515 PF00237 Ribosomal protein L22p/L17e CPS0D_RS00520 PF00189 Ribosomal protein S3, C-terminal domain CPS0D_RS00520 PF07650 KH domain CPS0D_RS00525 PF00252 Ribosomal protein L16p/L10e CPS0D_RS00530 PF00831 Ribosomal L29 protein CPS0D_RS00535 PF00366 Ribosomal protein S17 CPS0D_RS00540 PF00238 Ribosomal protein L14p/L23e CPS0D_RS00545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CPS0D_RS00545 PF00467 KOW motif CPS0D_RS00550 PF00281 Ribosomal protein L5 CPS0D_RS00550 PF00673 ribosomal L5P family C-terminus CPS0D_RS00555 PF00410 Ribosomal protein S8 CPS0D_RS00560 PF00347 Ribosomal protein L6 CPS0D_RS00565 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CPS0D_RS00570 PF03719 Ribosomal protein S5, C-terminal domain CPS0D_RS00570 PF00333 Ribosomal protein S5, N-terminal domain CPS0D_RS00575 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CPS0D_RS00580 PF00344 SecY translocase CPS0D_RS00585 PF00416 Ribosomal protein S13/S18 CPS0D_RS00590 PF00411 Ribosomal protein S11 CPS0D_RS00595 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CPS0D_RS00595 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CPS0D_RS00595 PF01000 RNA polymerase Rpb3/RpoA insert domain CPS0D_RS00600 PF01196 Ribosomal protein L17 CPS0D_RS00605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPS0D_RS00605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPS0D_RS00625 PF02075 Crossover junction endodeoxyribonuclease RuvC CPS0D_RS00630 PF01330 RuvA N terminal domain CPS0D_RS00635 PF00334 Nucleoside diphosphate kinase CPS0D_RS00645 PF01134 Glucose inhibited division protein A CPS0D_RS00645 PF13932 GidA associated domain CPS0D_RS00650 PF03796 DnaB-like helicase C terminal domain CPS0D_RS00650 PF00772 DnaB-like helicase N terminal domain CPS0D_RS00660 PF01066 CDP-alcohol phosphatidyltransferase CPS0D_RS00665 PF03219 TLC ATP/ADP transporter CPS0D_RS00670 PF01343 Peptidase family S49 CPS0D_RS00675 PF00476 DNA polymerase family A CPS0D_RS00675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPS0D_RS00675 PF01367 5'-3' exonuclease, C-terminal SAM fold CPS0D_RS00680 PF01121 Dephospho-CoA kinase CPS0D_RS00685 PF07497 Rho termination factor, RNA-binding domain CPS0D_RS00685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPS0D_RS00685 PF07498 Rho termination factor, N-terminal domain CPS0D_RS00695 PF00156 Phosphoribosyl transferase domain CPS0D_RS00700 PF00483 Nucleotidyl transferase CPS0D_RS00720 PF00762 Ferrochelatase CPS0D_RS00750 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS00755 PF12911 N-terminal TM domain of oligopeptide transport permease C CPS0D_RS00755 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS00760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPS0D_RS00760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPS0D_RS00770 PF03483 B3/4 domain CPS0D_RS00770 PF03484 tRNA synthetase B5 domain CPS0D_RS00770 PF03147 Ferredoxin-fold anticodon binding domain CPS0D_RS00770 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CPS0D_RS00770 PF01588 Putative tRNA binding domain CPS0D_RS00775 PF01476 LysM domain CPS0D_RS00795 PF02565 Recombination protein O C terminal CPS0D_RS00815 PF00158 Sigma-54 interaction domain CPS0D_RS00815 PF00072 Response regulator receiver domain CPS0D_RS00815 PF02954 Bacterial regulatory protein, Fis family CPS0D_RS00825 PF00512 His Kinase A (phospho-acceptor) domain CPS0D_RS00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPS0D_RS00845 PF13419 Haloacid dehalogenase-like hydrolase CPS0D_RS00850 PF01416 tRNA pseudouridine synthase CPS0D_RS00855 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CPS0D_RS00860 PF00149 Calcineurin-like phosphoesterase CPS0D_RS00870 PF03462 PCRF domain CPS0D_RS00870 PF00472 RF-1 domain CPS0D_RS00885 PF01709 Transcriptional regulator CPS0D_RS00895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPS0D_RS00900 PF00750 tRNA synthetases class I (R) CPS0D_RS00900 PF03485 Arginyl tRNA synthetase N terminal domain CPS0D_RS00900 PF05746 DALR anticodon binding domain CPS0D_RS00910 PF02224 Cytidylate kinase CPS0D_RS00920 PF01255 Putative undecaprenyl diphosphate synthase CPS0D_RS00930 PF02355 Protein export membrane protein CPS0D_RS00930 PF07549 SecD/SecF GG Motif CPS0D_RS00935 PF17768 RecJ OB domain CPS0D_RS00935 PF02272 DHHA1 domain CPS0D_RS00935 PF01368 DHH family CPS0D_RS00945 PF12728 Helix-turn-helix domain CPS0D_RS00950 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPS0D_RS00960 PF03503 Chlamydia cysteine-rich outer membrane protein 3 CPS0D_RS00965 PF01345 Domain of unknown function DUF11 CPS0D_RS00965 PF03504 Chlamydia cysteine-rich outer membrane protein 6 CPS0D_RS00970 PF05745 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) CPS0D_RS00975 PF00595 PDZ domain CPS0D_RS00975 PF11818 C-terminal domain of tail specific protease (DUF3340) CPS0D_RS00975 PF03572 Peptidase family S41 CPS0D_RS00975 PF17804 Tail specific protease N-terminal domain CPS0D_RS00990 PF00164 Ribosomal protein S12/S23 CPS0D_RS00995 PF00177 Ribosomal protein S7p/S5e CPS0D_RS01000 PF03144 Elongation factor Tu domain 2 CPS0D_RS01000 PF03764 Elongation factor G, domain IV CPS0D_RS01000 PF14492 Elongation Factor G, domain II CPS0D_RS01000 PF00679 Elongation factor G C-terminus CPS0D_RS01000 PF00009 Elongation factor Tu GTP binding domain CPS0D_RS01005 PF00338 Ribosomal protein S10p/S20e CPS0D_RS01010 PF00258 Flavodoxin CPS0D_RS01010 PF00175 Oxidoreductase NAD-binding domain CPS0D_RS01010 PF00667 FAD binding domain CPS0D_RS01015 PF02542 YgbB family CPS0D_RS01030 PF00829 Ribosomal prokaryotic L21 protein CPS0D_RS01035 PF01016 Ribosomal L27 protein CPS0D_RS01040 PF01926 50S ribosome-binding GTPase CPS0D_RS01040 PF01018 GTP1/OBG CPS0D_RS01045 PF00005 ABC transporter CPS0D_RS01050 PF01297 Zinc-uptake complex component A periplasmic CPS0D_RS01060 PF02581 Thiamine monophosphate synthase CPS0D_RS01065 PF02110 Hydroxyethylthiazole kinase family CPS0D_RS01070 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01070 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01070 PF03797 Autotransporter beta-domain CPS0D_RS01075 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01075 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01090 PF01235 Sodium:alanine symporter family CPS0D_RS01095 PF01252 Signal peptidase (SPase) II CPS0D_RS01100 PF01258 Prokaryotic dksA/traR C4-type zinc finger CPS0D_RS01105 PF03477 ATP cone domain CPS0D_RS01110 PF00677 Lumazine binding domain CPS0D_RS01115 PF10672 S-adenosylmethionine-dependent methyltransferase CPS0D_RS01120 PF00588 SpoU rRNA Methylase family CPS0D_RS01125 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CPS0D_RS01130 PF00375 Sodium:dicarboxylate symporter family CPS0D_RS01135 PF02817 e3 binding domain CPS0D_RS01135 PF00364 Biotin-requiring enzyme CPS0D_RS01135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPS0D_RS01140 PF01380 SIS domain CPS0D_RS01140 PF00571 CBS domain CPS0D_RS01165 PF00464 Serine hydroxymethyltransferase CPS0D_RS01170 PF00574 Clp protease CPS0D_RS01175 PF01678 Diaminopimelate epimerase CPS0D_RS01180 PF03682 Uncharacterised protein family (UPF0158) CPS0D_RS01185 PF01209 ubiE/COQ5 methyltransferase family CPS0D_RS01195 PF04055 Radical SAM superfamily CPS0D_RS01210 PF01740 STAS domain CPS0D_RS01215 PF00571 CBS domain CPS0D_RS01215 PF03471 Transporter associated domain CPS0D_RS01220 PF02130 Uncharacterized protein family UPF0054 CPS0D_RS01230 PF02245 Methylpurine-DNA glycosylase (MPG) CPS0D_RS01235 PF08206 Ribonuclease B OB domain CPS0D_RS01235 PF00773 RNB domain CPS0D_RS01240 PF00012 Hsp70 protein CPS0D_RS01245 PF01025 GrpE CPS0D_RS01250 PF01628 HrcA protein C terminal domain CPS0D_RS01255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPS0D_RS01255 PF04073 Aminoacyl-tRNA editing domain CPS0D_RS01255 PF03129 Anticodon binding domain CPS0D_RS01270 PF02594 Uncharacterised ACR, YggU family COG1872 CPS0D_RS01280 PF00155 Aminotransferase class I and II CPS0D_RS01300 PF03690 Uncharacterised protein family (UPF0160) CPS0D_RS01305 PF01230 HIT domain CPS0D_RS01330 PF00793 DAHP synthetase I family CPS0D_RS01330 PF18152 DAHP synthase ferredoxin-like domain CPS0D_RS01340 PF00497 Bacterial extracellular solute-binding proteins, family 3 CPS0D_RS01350 PF03099 Biotin/lipoate A/B protein ligase family CPS0D_RS01350 PF12706 Beta-lactamase superfamily domain CPS0D_RS01355 PF13167 GTP-binding GTPase N-terminal CPS0D_RS01355 PF16360 GTP-binding GTPase Middle Region CPS0D_RS01355 PF01926 50S ribosome-binding GTPase CPS0D_RS01360 PF00919 Uncharacterized protein family UPF0004 CPS0D_RS01360 PF04055 Radical SAM superfamily CPS0D_RS01370 PF02806 Alpha amylase, C-terminal all-beta domain CPS0D_RS01370 PF00128 Alpha amylase, catalytic domain CPS0D_RS01370 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CPS0D_RS01385 PF03797 Autotransporter beta-domain CPS0D_RS01385 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01385 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01400 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01400 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01400 PF03797 Autotransporter beta-domain CPS0D_RS01405 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01405 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01410 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01410 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01415 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01425 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01425 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01435 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01435 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01440 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01440 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01445 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01445 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01450 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01450 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01465 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01465 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01470 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01470 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01475 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS01475 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS01485 PF02686 Glu-tRNAGln amidotransferase C subunit CPS0D_RS01490 PF01425 Amidase CPS0D_RS01495 PF02637 GatB domain CPS0D_RS01495 PF02934 GatB/GatE catalytic domain CPS0D_RS01500 PF17461 Family of unknown function (DUF5423) CPS0D_RS01515 PF11858 Domain of unknown function (DUF3378) CPS0D_RS01515 PF01351 Ribonuclease HII CPS0D_RS01545 PF11019 Protein of unknown function (DUF2608) CPS0D_RS01550 PF11019 Protein of unknown function (DUF2608) CPS0D_RS01560 PF03190 Protein of unknown function, DUF255 CPS0D_RS01570 PF00398 Ribosomal RNA adenine dimethylase CPS0D_RS01575 PF02779 Transketolase, pyrimidine binding domain CPS0D_RS01575 PF02780 Transketolase, C-terminal domain CPS0D_RS01575 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPS0D_RS01585 PF02609 Exonuclease VII small subunit CPS0D_RS01590 PF13742 OB-fold nucleic acid binding domain CPS0D_RS01590 PF02601 Exonuclease VII, large subunit CPS0D_RS01595 PF00121 Triosephosphate isomerase CPS0D_RS01605 PF01327 Polypeptide deformylase CPS0D_RS01620 PF02545 Maf-like protein CPS0D_RS01625 PF00005 ABC transporter CPS0D_RS01625 PF12848 ABC transporter CPS0D_RS01630 PF00589 Phage integrase family CPS0D_RS01630 PF13495 Phage integrase, N-terminal SAM-like domain CPS0D_RS01635 PF00753 Metallo-beta-lactamase superfamily CPS0D_RS01635 PF12706 Beta-lactamase superfamily domain CPS0D_RS01645 PF00004 ATPase family associated with various cellular activities (AAA) CPS0D_RS01645 PF05362 Lon protease (S16) C-terminal proteolytic domain CPS0D_RS01645 PF02190 ATP-dependent protease La (LON) substrate-binding domain CPS0D_RS01650 PF00814 Glycoprotease family CPS0D_RS01655 PF01165 Ribosomal protein S21 CPS0D_RS01660 PF01556 DnaJ C terminal domain CPS0D_RS01660 PF00226 DnaJ domain CPS0D_RS01660 PF00684 DnaJ central domain CPS0D_RS01665 PF02780 Transketolase, C-terminal domain CPS0D_RS01665 PF02779 Transketolase, pyrimidine binding domain CPS0D_RS01685 PF00381 PTS HPr component phosphorylation site CPS0D_RS01690 PF05524 PEP-utilising enzyme, N-terminal CPS0D_RS01690 PF00391 PEP-utilising enzyme, mobile domain CPS0D_RS01690 PF02896 PEP-utilising enzyme, TIM barrel domain CPS0D_RS01695 PF02575 YbaB/EbfC DNA-binding family CPS0D_RS01700 PF12169 DNA polymerase III subunits gamma and tau domain III CPS0D_RS01705 PF07697 7TM-HD extracellular CPS0D_RS01705 PF01966 HD domain CPS0D_RS01705 PF07698 7TM receptor with intracellular HD hydrolase CPS0D_RS01725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CPS0D_RS01730 PF18073 Rubredoxin metal binding domain CPS0D_RS01735 PF14622 Ribonuclease-III-like CPS0D_RS01735 PF00035 Double-stranded RNA binding motif CPS0D_RS01745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPS0D_RS01745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPS0D_RS01745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPS0D_RS01745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPS0D_RS01750 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPS0D_RS01750 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPS0D_RS01755 PF17848 Acetyl-coA carboxylase zinc finger domain CPS0D_RS01755 PF01039 Carboxyl transferase domain CPS0D_RS01760 PF00692 dUTPase CPS0D_RS01765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPS0D_RS01770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CPS0D_RS01800 PF00004 ATPase family associated with various cellular activities (AAA) CPS0D_RS01800 PF07724 AAA domain (Cdc48 subfamily) CPS0D_RS01800 PF10431 C-terminal, D2-small domain, of ClpB protein CPS0D_RS01800 PF17871 AAA lid domain CPS0D_RS01800 PF02861 Clp amino terminal domain, pathogenicity island component CPS0D_RS01810 PF13396 Phospholipase_D-nuclease N-terminal CPS0D_RS01810 PF13091 PLD-like domain CPS0D_RS01820 PF01597 Glycine cleavage H-protein CPS0D_RS01835 PF02508 Rnf-Nqr subunit, membrane protein CPS0D_RS01840 PF02508 Rnf-Nqr subunit, membrane protein CPS0D_RS01845 PF04205 FMN-binding domain CPS0D_RS01850 PF03116 NQR2, RnfD, RnfE family CPS0D_RS01865 PF00308 Bacterial dnaA protein CPS0D_RS01865 PF08299 Bacterial dnaA protein helix-turn-helix CPS0D_RS01865 PF11638 DnaA N-terminal domain CPS0D_RS01875 PF17377 Family of unknown function (DUF5399) CPS0D_RS01880 PF01795 MraW methylase family CPS0D_RS01890 PF00905 Penicillin binding protein transpeptidase domain CPS0D_RS01890 PF03717 Penicillin-binding Protein dimerisation domain CPS0D_RS01900 PF08245 Mur ligase middle domain CPS0D_RS01900 PF02875 Mur ligase family, glutamate ligase domain CPS0D_RS01900 PF01225 Mur ligase family, catalytic domain CPS0D_RS01905 PF01520 N-acetylmuramoyl-L-alanine amidase CPS0D_RS01905 PF08239 Bacterial SH3 domain CPS0D_RS01915 PF00216 Bacterial DNA-binding protein CPS0D_RS01925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPS0D_RS01930 PF00005 ABC transporter CPS0D_RS01930 PF00664 ABC transporter transmembrane region CPS0D_RS01940 PF02621 Menaquinone biosynthesis CPS0D_RS01980 PF00849 RNA pseudouridylate synthase CPS0D_RS01980 PF01479 S4 domain CPS0D_RS01985 PF00633 Helix-hairpin-helix motif CPS0D_RS01985 PF00730 HhH-GPD superfamily base excision DNA repair protein CPS0D_RS01985 PF14815 NUDIX domain CPS0D_RS01995 PF02517 CPBP intramembrane metalloprotease CPS0D_RS02025 PF00266 Aminotransferase class-V CPS0D_RS02030 PF03471 Transporter associated domain CPS0D_RS02030 PF00571 CBS domain CPS0D_RS02035 PF00571 CBS domain CPS0D_RS02035 PF03471 Transporter associated domain CPS0D_RS02035 PF01595 Cyclin M transmembrane N-terminal domain CPS0D_RS02045 PF00692 dUTPase CPS0D_RS02050 PF17864 RuvB AAA lid domain CPS0D_RS02050 PF05491 RuvB C-terminal winged helix domain CPS0D_RS02050 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPS0D_RS02055 PF08486 Stage II sporulation protein CPS0D_RS02060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CPS0D_RS02060 PF00128 Alpha amylase, catalytic domain CPS0D_RS02075 PF00436 Single-strand binding protein family CPS0D_RS02080 PF02789 Cytosol aminopeptidase family, N-terminal domain CPS0D_RS02080 PF00883 Cytosol aminopeptidase family, catalytic domain CPS0D_RS02085 PF07382 Histone H1-like nucleoprotein HC2 CPS0D_RS02115 PF06969 HemN C-terminal domain CPS0D_RS02115 PF04055 Radical SAM superfamily CPS0D_RS02125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPS0D_RS02125 PF16078 2-oxoglutarate dehydrogenase N-terminus CPS0D_RS02125 PF00676 Dehydrogenase E1 component CPS0D_RS02125 PF02779 Transketolase, pyrimidine binding domain CPS0D_RS02125 PF16870 2-oxoglutarate dehydrogenase C-terminal CPS0D_RS02130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPS0D_RS02130 PF00364 Biotin-requiring enzyme CPS0D_RS02130 PF02817 e3 binding domain CPS0D_RS02140 PF04551 GcpE protein CPS0D_RS02160 PF00111 2Fe-2S iron-sulfur cluster binding domain CPS0D_RS02170 PF00771 FHIPEP family CPS0D_RS02175 PF04542 Sigma-70 region 2 CPS0D_RS02175 PF04539 Sigma-70 region 3 CPS0D_RS02175 PF04545 Sigma-70, region 4 CPS0D_RS02185 PF00579 tRNA synthetases class I (W and Y) CPS0D_RS02185 PF01479 S4 domain CPS0D_RS02190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPS0D_RS02190 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CPS0D_RS02195 PF03144 Elongation factor Tu domain 2 CPS0D_RS02195 PF00009 Elongation factor Tu GTP binding domain CPS0D_RS02195 PF06421 GTP-binding protein LepA C-terminus CPS0D_RS02195 PF00679 Elongation factor G C-terminus CPS0D_RS02205 PF03219 TLC ATP/ADP transporter CPS0D_RS02215 PF01297 Zinc-uptake complex component A periplasmic CPS0D_RS02220 PF00005 ABC transporter CPS0D_RS02225 PF02742 Iron dependent repressor, metal binding and dimerisation domain CPS0D_RS02225 PF00950 ABC 3 transport family CPS0D_RS02230 PF00950 ABC 3 transport family CPS0D_RS02235 PF13288 DXP reductoisomerase C-terminal domain CPS0D_RS02235 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CPS0D_RS02235 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CPS0D_RS02240 PF02163 Peptidase family M50 CPS0D_RS02250 PF02463 RecF/RecN/SMC N terminal domain CPS0D_RS02255 PF02768 DNA polymerase III beta subunit, C-terminal domain CPS0D_RS02255 PF02767 DNA polymerase III beta subunit, central domain CPS0D_RS02255 PF00712 DNA polymerase III beta subunit, N-terminal domain CPS0D_RS02260 PF01668 SmpB protein CPS0D_RS02265 PF02424 ApbE family CPS0D_RS02270 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPS0D_RS02270 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPS0D_RS02275 PF17455 Late transcription unit B CPS0D_RS02290 PF13091 PLD-like domain CPS0D_RS02295 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CPS0D_RS02300 PF00830 Ribosomal L28 family CPS0D_RS02305 PF02446 4-alpha-glucanotransferase CPS0D_RS02320 PF00771 FHIPEP family CPS0D_RS02325 PF01312 FlhB HrpN YscU SpaS Family CPS0D_RS02330 PF06071 Protein of unknown function (DUF933) CPS0D_RS02330 PF01926 50S ribosome-binding GTPase CPS0D_RS02335 PF01687 Riboflavin kinase CPS0D_RS02335 PF06574 FAD synthetase CPS0D_RS02340 PF16198 tRNA pseudouridylate synthase B C-terminal domain CPS0D_RS02340 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPS0D_RS02345 PF02033 Ribosome-binding factor A CPS0D_RS02350 PF11987 Translation-initiation factor 2 CPS0D_RS02350 PF00009 Elongation factor Tu GTP binding domain CPS0D_RS02355 PF08529 NusA N-terminal domain CPS0D_RS02355 PF13184 NusA-like KH domain CPS0D_RS02360 PF00575 S1 RNA binding domain CPS0D_RS02365 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPS0D_RS02370 PF01648 4'-phosphopantetheinyl transferase superfamily CPS0D_RS02380 PF01790 Prolipoprotein diacylglyceryl transferase CPS0D_RS02385 PF02096 60Kd inner membrane protein CPS0D_RS02390 PF00308 Bacterial dnaA protein CPS0D_RS02390 PF08299 Bacterial dnaA protein helix-turn-helix CPS0D_RS02400 PF00343 Carbohydrate phosphorylase CPS0D_RS02405 PF02817 e3 binding domain CPS0D_RS02405 PF00364 Biotin-requiring enzyme CPS0D_RS02405 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPS0D_RS02410 PF00364 Biotin-requiring enzyme CPS0D_RS02410 PF02779 Transketolase, pyrimidine binding domain CPS0D_RS02410 PF02780 Transketolase, C-terminal domain CPS0D_RS02415 PF00676 Dehydrogenase E1 component CPS0D_RS02425 PF00132 Bacterial transferase hexapeptide (six repeats) CPS0D_RS02425 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CPS0D_RS02430 PF03938 Outer membrane protein (OmpH-like) CPS0D_RS02435 PF01103 Surface antigen CPS0D_RS02435 PF07244 Surface antigen variable number repeat CPS0D_RS02440 PF13662 Toprim domain CPS0D_RS02445 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPS0D_RS02445 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPS0D_RS02450 PF00698 Acyl transferase domain CPS0D_RS02460 PF00550 Phosphopantetheine attachment site CPS0D_RS02485 PF00209 Sodium:neurotransmitter symporter family CPS0D_RS02490 PF00375 Sodium:dicarboxylate symporter family CPS0D_RS02505 PF03448 MgtE intracellular N domain CPS0D_RS02505 PF01769 Divalent cation transporter CPS0D_RS02505 PF00571 CBS domain CPS0D_RS02515 PF13520 Amino acid permease CPS0D_RS02520 PF01791 DeoC/LacD family aldolase CPS0D_RS02530 PF00005 ABC transporter CPS0D_RS02530 PF09383 NIL domain CPS0D_RS02535 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS02540 PF03180 NLPA lipoprotein CPS0D_RS02555 PF01751 Toprim domain CPS0D_RS02555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPS0D_RS02555 PF00986 DNA gyrase B subunit, carboxyl terminus CPS0D_RS02555 PF00204 DNA gyrase B CPS0D_RS02560 PF00521 DNA gyrase/topoisomerase IV, subunit A CPS0D_RS02560 PF03989 DNA gyrase C-terminal domain, beta-propeller CPS0D_RS02565 PF02223 Thymidylate kinase CPS0D_RS02580 PF03481 Putative GTP-binding controlling metal-binding CPS0D_RS02580 PF01300 Telomere recombination CPS0D_RS02605 PF01040 UbiA prenyltransferase family CPS0D_RS02610 PF02441 Flavoprotein CPS0D_RS02615 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CPS0D_RS02615 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CPS0D_RS02630 PF01975 Survival protein SurE CPS0D_RS02635 PF01171 PP-loop family CPS0D_RS02640 PF07516 SecA Wing and Scaffold domain CPS0D_RS02640 PF01043 SecA preprotein cross-linking domain CPS0D_RS02640 PF07517 SecA DEAD-like domain CPS0D_RS02640 PF02810 SEC-C motif CPS0D_RS02670 PF04055 Radical SAM superfamily CPS0D_RS02670 PF00919 Uncharacterized protein family UPF0004 CPS0D_RS02670 PF18693 TRAM domain CPS0D_RS02675 PF00471 Ribosomal protein L33 CPS0D_RS02685 PF00005 ABC transporter CPS0D_RS02695 PF00572 Ribosomal protein L13 CPS0D_RS02700 PF00380 Ribosomal protein S9/S16 CPS0D_RS02730 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CPS0D_RS02735 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CPS0D_RS02735 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CPS0D_RS02740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPS0D_RS02745 PF00814 Glycoprotease family CPS0D_RS02750 PF01316 Arginine repressor, DNA binding domain CPS0D_RS02750 PF02863 Arginine repressor, C-terminal domain CPS0D_RS02755 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS02760 PF00005 ABC transporter CPS0D_RS02775 PF03631 Virulence factor BrkB CPS0D_RS02790 PF00834 Ribulose-phosphate 3 epimerase family CPS0D_RS02795 PF08207 Elongation factor P (EF-P) KOW-like domain CPS0D_RS02795 PF09285 Elongation factor P, C-terminal CPS0D_RS02795 PF01132 Elongation factor P (EF-P) OB domain CPS0D_RS02800 PF00364 Biotin-requiring enzyme CPS0D_RS02805 PF02785 Biotin carboxylase C-terminal domain CPS0D_RS02805 PF00289 Biotin carboxylase, N-terminal domain CPS0D_RS02805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPS0D_RS02870 PF00962 Adenosine/AMP deaminase CPS0D_RS02875 PF00117 Glutamine amidotransferase class-I CPS0D_RS02875 PF00958 GMP synthase C terminal domain CPS0D_RS02875 PF02540 NAD synthase CPS0D_RS02880 PF00478 IMP dehydrogenase / GMP reductase domain CPS0D_RS02880 PF00571 CBS domain CPS0D_RS02915 PF01702 Queuine tRNA-ribosyltransferase CPS0D_RS02935 PF02600 Disulfide bond formation protein DsbB CPS0D_RS02955 PF00005 ABC transporter CPS0D_RS02980 PF02348 Cytidylyltransferase CPS0D_RS02985 PF00117 Glutamine amidotransferase class-I CPS0D_RS02985 PF06418 CTP synthase N-terminus CPS0D_RS02990 PF03652 Holliday junction resolvase CPS0D_RS02995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPS0D_RS03000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPS0D_RS03005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPS0D_RS03010 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS03015 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS03015 PF12911 N-terminal TM domain of oligopeptide transport permease C CPS0D_RS03020 PF00005 ABC transporter CPS0D_RS03020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPS0D_RS03025 PF00005 ABC transporter CPS0D_RS03025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPS0D_RS03030 PF06685 Protein of unknown function (DUF1186) CPS0D_RS03035 PF00939 Sodium:sulfate symporter transmembrane region CPS0D_RS03040 PF00365 Phosphofructokinase CPS0D_RS03050 PF00365 Phosphofructokinase CPS0D_RS03065 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CPS0D_RS03070 PF08264 Anticodon-binding domain of tRNA CPS0D_RS03070 PF09334 tRNA synthetases class I (M) CPS0D_RS03070 PF13603 Leucyl-tRNA synthetase, Domain 2 CPS0D_RS03080 PF01494 FAD binding domain CPS0D_RS03090 PF00533 BRCA1 C Terminus (BRCT) domain CPS0D_RS03090 PF01653 NAD-dependent DNA ligase adenylation domain CPS0D_RS03090 PF03120 NAD-dependent DNA ligase OB-fold domain CPS0D_RS03090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CPS0D_RS03090 PF12826 Helix-hairpin-helix motif CPS0D_RS03095 PF00069 Protein kinase domain CPS0D_RS03095 PF03781 Sulfatase-modifying factor enzyme 1 CPS0D_RS03130 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CPS0D_RS03130 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS03155 PF10431 C-terminal, D2-small domain, of ClpB protein CPS0D_RS03155 PF02861 Clp amino terminal domain, pathogenicity island component CPS0D_RS03155 PF00004 ATPase family associated with various cellular activities (AAA) CPS0D_RS03155 PF17871 AAA lid domain CPS0D_RS03155 PF07724 AAA domain (Cdc48 subfamily) CPS0D_RS03165 PF00005 ABC transporter CPS0D_RS03170 PF02405 Permease MlaE CPS0D_RS03175 PF00202 Aminotransferase class-III CPS0D_RS03180 PF02622 Uncharacterized ACR, COG1678 CPS0D_RS03190 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPS0D_RS03215 PF01784 NIF3 (NGG1p interacting factor 3) CPS0D_RS03220 PF01432 Peptidase family M3 CPS0D_RS03220 PF08439 Oligopeptidase F CPS0D_RS03225 PF00166 Chaperonin 10 Kd subunit CPS0D_RS03230 PF00118 TCP-1/cpn60 chaperonin family CPS0D_RS03250 PF09825 Biotin-protein ligase, N terminal CPS0D_RS03260 PF13538 UvrD-like helicase C-terminal domain CPS0D_RS03260 PF14490 Helix-hairpin-helix containing domain CPS0D_RS03260 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CPS0D_RS03265 PF09334 tRNA synthetases class I (M) CPS0D_RS03265 PF08264 Anticodon-binding domain of tRNA CPS0D_RS03275 PF00625 Guanylate kinase CPS0D_RS03280 PF01351 Ribonuclease HII CPS0D_RS03285 PF01245 Ribosomal protein L19 CPS0D_RS03290 PF01746 tRNA (Guanine-1)-methyltransferase CPS0D_RS03295 PF00886 Ribosomal protein S16 CPS0D_RS03300 PF02978 Signal peptide binding domain CPS0D_RS03300 PF00448 SRP54-type protein, GTPase domain CPS0D_RS03300 PF02881 SRP54-type protein, helical bundle domain CPS0D_RS03305 PF17827 PrmC N-terminal domain CPS0D_RS03305 PF05175 Methyltransferase small domain CPS0D_RS03310 PF03462 PCRF domain CPS0D_RS03310 PF00472 RF-1 domain CPS0D_RS03315 PF01197 Ribosomal protein L31 CPS0D_RS03325 PF10502 Signal peptidase, peptidase S26 CPS0D_RS03330 PF08264 Anticodon-binding domain of tRNA CPS0D_RS03330 PF00133 tRNA synthetases class I (I, L, M and V) CPS0D_RS03340 PF13638 PIN domain CPS0D_RS03340 PF02562 PhoH-like protein CPS0D_RS03360 PF02322 Cytochrome bd terminal oxidase subunit II CPS0D_RS03365 PF01654 Cytochrome bd terminal oxidase subunit I CPS0D_RS03370 PF02457 DisA bacterial checkpoint controller nucleotide-binding CPS0D_RS03385 PF00224 Pyruvate kinase, barrel domain CPS0D_RS03385 PF02887 Pyruvate kinase, alpha/beta domain CPS0D_RS03390 PF17760 UvrA interaction domain CPS0D_RS03390 PF17755 UvrA DNA-binding domain CPS0D_RS03395 PF00069 Protein kinase domain CPS0D_RS03420 PF01813 ATP synthase subunit D CPS0D_RS03425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPS0D_RS03425 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPS0D_RS03430 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPS0D_RS03430 PF16886 ATPsynthase alpha/beta subunit N-term extension CPS0D_RS03430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPS0D_RS03435 PF10962 Protein of unknown function (DUF2764) CPS0D_RS03440 PF06188 HrpE/YscL/FliH and V-type ATPase subunit E CPS0D_RS03455 PF00923 Transaldolase/Fructose-6-phosphate aldolase CPS0D_RS03460 PF04998 RNA polymerase Rpb1, domain 5 CPS0D_RS03460 PF05000 RNA polymerase Rpb1, domain 4 CPS0D_RS03460 PF04983 RNA polymerase Rpb1, domain 3 CPS0D_RS03460 PF00623 RNA polymerase Rpb1, domain 2 CPS0D_RS03460 PF04997 RNA polymerase Rpb1, domain 1 CPS0D_RS03465 PF00562 RNA polymerase Rpb2, domain 6 CPS0D_RS03465 PF10385 RNA polymerase beta subunit external 1 domain CPS0D_RS03465 PF04565 RNA polymerase Rpb2, domain 3 CPS0D_RS03465 PF04561 RNA polymerase Rpb2, domain 2 CPS0D_RS03465 PF04563 RNA polymerase beta subunit CPS0D_RS03465 PF04560 RNA polymerase Rpb2, domain 7 CPS0D_RS03470 PF00542 Ribosomal protein L7/L12 C-terminal domain CPS0D_RS03470 PF16320 Ribosomal protein L7/L12 dimerisation domain CPS0D_RS03475 PF00466 Ribosomal protein L10 CPS0D_RS03480 PF00687 Ribosomal protein L1p/L10e family CPS0D_RS03485 PF03946 Ribosomal protein L11, N-terminal domain CPS0D_RS03485 PF00298 Ribosomal protein L11, RNA binding domain CPS0D_RS03490 PF02357 Transcription termination factor nusG CPS0D_RS03505 PF03143 Elongation factor Tu C-terminal domain CPS0D_RS03505 PF03144 Elongation factor Tu domain 2 CPS0D_RS03505 PF00009 Elongation factor Tu GTP binding domain CPS0D_RS03515 PF01176 Translation initiation factor 1A / IF-1 CPS0D_RS03535 PF02632 BioY family CPS0D_RS03560 PF00701 Dihydrodipicolinate synthetase family CPS0D_RS03565 PF00696 Amino acid kinase family CPS0D_RS03570 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPS0D_RS03570 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPS0D_RS03575 PF05173 Dihydrodipicolinate reductase, C-terminus CPS0D_RS03575 PF01113 Dihydrodipicolinate reductase, N-terminus CPS0D_RS03580 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CPS0D_RS03600 PF04055 Radical SAM superfamily CPS0D_RS03600 PF06968 Biotin and Thiamin Synthesis associated domain CPS0D_RS03605 PF00155 Aminotransferase class I and II CPS0D_RS03615 PF00202 Aminotransferase class-III CPS0D_RS03625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPS0D_RS03630 PF01202 Shikimate kinase CPS0D_RS03635 PF01264 Chorismate synthase CPS0D_RS03640 PF01761 3-dehydroquinate synthase CPS0D_RS03645 PF01487 Type I 3-dehydroquinase CPS0D_RS03645 PF08501 Shikimate dehydrogenase substrate binding domain CPS0D_RS03645 PF01488 Shikimate / quinate 5-dehydrogenase CPS0D_RS03650 PF11019 Protein of unknown function (DUF2608) CPS0D_RS03655 PF04966 Carbohydrate-selective porin, OprB family CPS0D_RS03660 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) CPS0D_RS03665 PF13520 Amino acid permease CPS0D_RS03670 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CPS0D_RS03670 PF01266 FAD dependent oxidoreductase CPS0D_RS03680 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CPS0D_RS03680 PF00056 lactate/malate dehydrogenase, NAD binding domain CPS0D_RS03685 PF17446 Late transcription unit A CPS0D_RS03690 PF00342 Phosphoglucose isomerase CPS0D_RS03695 PF00589 Phage integrase family CPS0D_RS03695 PF02899 Phage integrase, N-terminal SAM-like domain CPS0D_RS03735 PF02401 LytB protein CPS0D_RS03740 PF17816 PDZ domain CPS0D_RS03740 PF03572 Peptidase family S41 CPS0D_RS03745 PF03600 Citrate transporter CPS0D_RS03750 PF00916 Sulfate permease family CPS0D_RS03750 PF01740 STAS domain CPS0D_RS03755 PF00206 Lyase CPS0D_RS03755 PF10415 Fumarase C C-terminus CPS0D_RS03760 PF00528 Binding-protein-dependent transport system inner membrane component CPS0D_RS03770 PF01914 MarC family integral membrane protein CPS0D_RS03775 PF00557 Metallopeptidase family M24 CPS0D_RS03775 PF02810 SEC-C motif CPS0D_RS03815 PF14437 MafB19-like deaminase CPS0D_RS03820 PF00312 Ribosomal protein S15 CPS0D_RS03825 PF00575 S1 RNA binding domain CPS0D_RS03825 PF00013 KH domain CPS0D_RS03825 PF01138 3' exoribonuclease family, domain 1 CPS0D_RS03825 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CPS0D_RS03825 PF03725 3' exoribonuclease family, domain 2 CPS0D_RS03830 PF01434 Peptidase family M41 CPS0D_RS03830 PF00004 ATPase family associated with various cellular activities (AAA) CPS0D_RS03830 PF17862 AAA+ lid domain CPS0D_RS03835 PF01171 PP-loop family CPS0D_RS03860 PF01409 tRNA synthetases class II core domain (F) CPS0D_RS03860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CPS0D_RS03865 PF00453 Ribosomal protein L20 CPS0D_RS03870 PF01632 Ribosomal protein L35 CPS0D_RS03875 PF00707 Translation initiation factor IF-3, C-terminal domain CPS0D_RS03875 PF05198 Translation initiation factor IF-3, N-terminal domain CPS0D_RS03880 PF01029 NusB family CPS0D_RS03885 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPS0D_RS03885 PF01565 FAD binding domain CPS0D_RS03890 PF06962 Putative rRNA methylase CPS0D_RS03900 PF00268 Ribonucleotide reductase, small chain CPS0D_RS03905 PF00317 Ribonucleotide reductase, all-alpha domain CPS0D_RS03905 PF02867 Ribonucleotide reductase, barrel domain CPS0D_RS03905 PF03477 ATP cone domain CPS0D_RS03910 PF01066 CDP-alcohol phosphatidyltransferase CPS0D_RS03915 PF02646 RmuC family CPS0D_RS03925 PF07687 Peptidase dimerisation domain CPS0D_RS03925 PF01546 Peptidase family M20/M25/M40 CPS0D_RS03930 PF13180 PDZ domain CPS0D_RS03930 PF17820 PDZ domain CPS0D_RS03935 PF02629 CoA binding domain CPS0D_RS03935 PF00549 CoA-ligase CPS0D_RS03940 PF08442 ATP-grasp domain CPS0D_RS03940 PF00549 CoA-ligase CPS0D_RS03945 PF00448 SRP54-type protein, GTPase domain CPS0D_RS03950 PF01027 Inhibitor of apoptosis-promoting Bax1 CPS0D_RS03955 PF03222 Tryptophan/tyrosine permease family CPS0D_RS03960 PF01380 SIS domain CPS0D_RS03965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPS0D_RS03965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPS0D_RS03965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPS0D_RS03965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPS0D_RS03970 PF12627 Probable RNA and SrmB- binding site of polymerase A CPS0D_RS03970 PF12626 Polymerase A arginine-rich C-terminus CPS0D_RS03970 PF01743 Poly A polymerase head domain CPS0D_RS03975 PF02684 Lipid-A-disaccharide synthetase CPS0D_RS03975 PF07578 Lipid A Biosynthesis N-terminal domain CPS0D_RS04040 PF07548 Chlamydia polymorphic membrane protein middle domain CPS0D_RS04040 PF03797 Autotransporter beta-domain CPS0D_RS04045 PF02504 Fatty acid synthesis protein CPS0D_RS04050 PF01783 Ribosomal L32p protein family CPS0D_RS04060 PF10150 Ribonuclease E/G family CPS0D_RS04060 PF00575 S1 RNA binding domain CPS0D_RS04085 PF00288 GHMP kinases N terminal domain CPS0D_RS04090 PF01281 Ribosomal protein L9, N-terminal domain CPS0D_RS04090 PF03948 Ribosomal protein L9, C-terminal domain CPS0D_RS04095 PF01084 Ribosomal protein S18 CPS0D_RS04100 PF01250 Ribosomal protein S6 CPS0D_RS04105 PF01195 Peptidyl-tRNA hydrolase CPS0D_RS04110 PF14693 Ribosomal protein TL5, C-terminal domain CPS0D_RS04110 PF01386 Ribosomal L25p family CPS0D_RS04120 PF08323 Starch synthase catalytic domain CPS0D_RS04120 PF00534 Glycosyl transferases group 1 CPS0D_RS04125 PF01066 CDP-alcohol phosphatidyltransferase CPS0D_RS04135 PF02091 Glycyl-tRNA synthetase alpha subunit CPS0D_RS04135 PF02092 Glycyl-tRNA synthetase beta subunit CPS0D_RS04160 PF01807 CHC2 zinc finger CPS0D_RS04160 PF08275 DNA primase catalytic core, N-terminal domain CPS0D_RS04165 PF00488 MutS domain V CPS0D_RS04165 PF05190 MutS family domain IV CPS0D_RS04165 PF05192 MutS domain III CPS0D_RS04165 PF05188 MutS domain II CPS0D_RS04165 PF01624 MutS domain I CPS0D_RS04170 PF08459 UvrC Helix-hairpin-helix N-terminal CPS0D_RS04170 PF01541 GIY-YIG catalytic domain CPS0D_RS04180 PF00253 Ribosomal protein S14p/S29e CPS0D_RS04185 PF00444 Ribosomal protein L36 CPS0D_RS04190 PF00825 Ribonuclease P CPS0D_RS04200 PF01406 tRNA synthetases class I (C) catalytic domain CPS0D_RS04200 PF09190 DALR domain CPS0D_RS04205 PF00152 tRNA synthetases class II (D, K and N) CPS0D_RS04205 PF01336 OB-fold nucleic acid binding domain CPS0D_RS04220 PF00271 Helicase conserved C-terminal domain CPS0D_RS04220 PF17764 3′ DNA-binding domain (3′BD) CPS0D_RS04220 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPS0D_RS04220 PF04851 Type III restriction enzyme, res subunit CPS0D_RS04220 PF18074 Primosomal protein N C-terminal domain CPS0D_RS04225 PF00155 Aminotransferase class I and II CPS0D_RS04230 PF01553 Acyltransferase CPS0D_RS04230 PF00501 AMP-binding enzyme CPS0D_RS04240 PF00459 Inositol monophosphatase family CPS0D_RS04245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CPS0D_RS04245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CPS0D_RS04250 PF00719 Inorganic pyrophosphatase CPS0D_RS04255 PF00293 NUDIX domain CPS0D_RS04260 PF00109 Beta-ketoacyl synthase, N-terminal domain CPS0D_RS04260 PF02801 Beta-ketoacyl synthase, C-terminal domain CPS0D_RS04280 PF04055 Radical SAM superfamily CPS0D_RS04310 PF07478 D-ala D-ala ligase C-terminus CPS0D_RS04310 PF01820 D-ala D-ala ligase N-terminus CPS0D_RS04310 PF01225 Mur ligase family, catalytic domain CPS0D_RS04310 PF02875 Mur ligase family, glutamate ligase domain CPS0D_RS04310 PF08245 Mur ligase middle domain CPS0D_RS04315 PF04101 Glycosyltransferase family 28 C-terminal domain CPS0D_RS04315 PF03033 Glycosyltransferase family 28 N-terminal domain CPS0D_RS04320 PF01098 Cell cycle protein CPS0D_RS04325 PF01476 LysM domain CPS0D_RS04325 PF00877 NlpC/P60 family CPS0D_RS04330 PF08245 Mur ligase middle domain CPS0D_RS04330 PF02875 Mur ligase family, glutamate ligase domain CPS0D_RS04335 PF00953 Glycosyl transferase family 4 CPS0D_RS04340 PF01225 Mur ligase family, catalytic domain CPS0D_RS04340 PF02875 Mur ligase family, glutamate ligase domain CPS0D_RS04340 PF08245 Mur ligase middle domain CPS0D_RS04350 PF00118 TCP-1/cpn60 chaperonin family CPS0D_RS04365 PF09285 Elongation factor P, C-terminal CPS0D_RS04365 PF08207 Elongation factor P (EF-P) KOW-like domain CPS0D_RS04365 PF01132 Elongation factor P (EF-P) OB domain CPS0D_RS04375 PF02779 Transketolase, pyrimidine binding domain CPS0D_RS04375 PF02780 Transketolase, C-terminal domain CPS0D_RS04375 PF00456 Transketolase, thiamine diphosphate binding domain CPS0D_RS04380 PF01411 tRNA synthetases class II (A) CPS0D_RS04380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPS0D_RS04380 PF02272 DHHA1 domain CPS0D_RS04385 PF03461 TRCF domain CPS0D_RS04385 PF00271 Helicase conserved C-terminal domain CPS0D_RS04385 PF17757 UvrB interaction domain CPS0D_RS04385 PF00270 DEAD/DEAH box helicase CPS0D_RS04385 PF02559 CarD-like/TRCF domain CPS0D_RS04390 PF01208 Uroporphyrinogen decarboxylase (URO-D) CPS0D_RS04395 PF06969 HemN C-terminal domain CPS0D_RS04395 PF04055 Radical SAM superfamily CPS0D_RS04400 PF01593 Flavin containing amine oxidoreductase CPS0D_RS04410 PF07432 Histone H1-like protein Hc1 CPS0D_RS04415 PF05958 tRNA (Uracil-5-)-methyltransferase CPS0D_RS04420 PF02699 Preprotein translocase subunit CPS0D_RS04425 PF00111 2Fe-2S iron-sulfur cluster binding domain CPS0D_RS04425 PF00175 Oxidoreductase NAD-binding domain CPS0D_RS04455 PF17854 FtsK alpha domain CPS0D_RS04455 PF01580 FtsK/SpoIIIE family CPS0D_RS04455 PF09397 Ftsk gamma domain CPS0D_RS04455 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CPS0D_RS04460 PF00753 Metallo-beta-lactamase superfamily CPS0D_RS04470 PF01161 Phosphatidylethanolamine-binding protein CPS0D_RS04475 PF01235 Sodium:alanine symporter family CPS0D_RS04490 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPS0D_RS04495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CPS0D_RS04495 PF00925 GTP cyclohydrolase II CPS0D_RS04500 PF01872 RibD C-terminal domain CPS0D_RS04500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPS0D_RS04505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPS0D_RS04505 PF02403 Seryl-tRNA synthetase N-terminal domain CPS0D_RS04515 PF00403 Heavy-metal-associated domain CPS0D_RS04520 PF01098 Cell cycle protein CPS0D_RS04525 PF02237 Biotin protein ligase C terminal domain CPS0D_RS04525 PF03099 Biotin/lipoate A/B protein ligase family CPS0D_RS04525 PF08279 HTH domain CPS0D_RS04535 PF00849 RNA pseudouridylate synthase CPS0D_RS04535 PF01479 S4 domain CPS0D_RS04540 PF00300 Histidine phosphatase superfamily (branch 1) CPS0D_RS04565 PF18269 T3SS EscN ATPase C-terminal domain CPS0D_RS04565 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPS0D_RS04565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPS0D_RS04580 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPS0D_RS04580 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPS0D_RS04600 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CPS0D_RS04600 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CPS0D_RS04610 PF04434 SWIM zinc finger CPS0D_RS04610 PF00271 Helicase conserved C-terminal domain CPS0D_RS04610 PF00176 SNF2 family N-terminal domain CPS0D_RS04620 PF05697 Bacterial trigger factor protein (TF) CPS0D_RS04620 PF05698 Bacterial trigger factor protein (TF) C-terminus CPS0D_RS04625 PF00574 Clp protease CPS0D_RS04630 PF07724 AAA domain (Cdc48 subfamily) CPS0D_RS04630 PF06689 ClpX C4-type zinc finger CPS0D_RS04630 PF10431 C-terminal, D2-small domain, of ClpB protein CPS0D_RS04635 PF01743 Poly A polymerase head domain CPS0D_RS04635 PF13735 tRNA nucleotidyltransferase domain 2 putative CPS0D_RS04635 PF12627 Probable RNA and SrmB- binding site of polymerase A CPS0D_RS04640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPS0D_RS04640 PF01926 50S ribosome-binding GTPase CPS0D_RS04650 PF01043 SecA preprotein cross-linking domain CPS0D_RS04650 PF07516 SecA Wing and Scaffold domain CPS0D_RS04650 PF07517 SecA DEAD-like domain CPS0D_RS04660 PF02666 Phosphatidylserine decarboxylase CPS0D_RS04665 PF01926 50S ribosome-binding GTPase CPS0D_RS04665 PF10396 GTP-binding protein TrmE N-terminus CPS0D_RS04665 PF12631 MnmE helical domain CPS0D_RS04670 PF00633 Helix-hairpin-helix motif CPS0D_RS04670 PF00730 HhH-GPD superfamily base excision DNA repair protein CPS0D_RS04670 PF10576 Iron-sulfur binding domain of endonuclease III CPS0D_RS04675 PF05525 Branched-chain amino acid transport protein CPS0D_RS04680 PF00271 Helicase conserved C-terminal domain CPS0D_RS04680 PF12419 SNF2 Helicase protein CPS0D_RS04680 PF00176 SNF2 family N-terminal domain CPS0D_RS04690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPS0D_RS04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPS0D_RS04695 PF04055 Radical SAM superfamily CPS0D_RS04700 PF01514 Secretory protein of YscJ/FliF family CPS0D_RS04710 PF02108 Flagellar assembly protein FliH CPS0D_RS04715 PF00813 FliP family CPS0D_RS04720 PF01313 Bacterial export proteins, family 3 CPS0D_RS04725 PF01311 Bacterial export proteins, family 1 CPS0D_RS04750 PF07963 Prokaryotic N-terminal methylation motif CPS0D_RS04755 PF00482 Type II secretion system (T2SS), protein F CPS0D_RS04760 PF00437 Type II/IV secretion system protein CPS0D_RS04765 PF00263 Bacterial type II and III secretion system protein CPS0D_RS04765 PF11741 AMIN domain CPS0D_RS04765 PF07660 Secretin and TonB N terminus short domain CPS0D_RS04765 PF03958 Bacterial type II/III secretion system short domain CPS0D_RS04780 PF00557 Metallopeptidase family M24 CPS0D_RS04780 PF01321 Creatinase/Prolidase N-terminal domain CPS0D_RS04785 PF08676 MutL C terminal dimerisation domain CPS0D_RS04785 PF01119 DNA mismatch repair protein, C-terminal domain CPS0D_RS04805 PF04888 Secretion system effector C (SseC) like family CPS0D_RS04810 PF00892 EamA-like transporter family CPS0D_RS04815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPS0D_RS04815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPS0D_RS04815 PF02824 TGS domain CPS0D_RS04815 PF03129 Anticodon binding domain CPS0D_RS04820 PF13614 AAA domain CPS0D_RS04825 PF03677 Uncharacterised protein family (UPF0137) CPS0D_RS04830 PF17435 Family of unknown function (DUF5414) CPS0D_RS04835 PF00579 tRNA synthetases class I (W and Y) CPS0D_RS04840 PF17757 UvrB interaction domain CPS0D_RS04840 PF12344 Ultra-violet resistance protein B CPS0D_RS04840 PF02151 UvrB/uvrC motif CPS0D_RS04840 PF04851 Type III restriction enzyme, res subunit CPS0D_RS04840 PF00271 Helicase conserved C-terminal domain CPS0D_RS04845 PF03952 Enolase, N-terminal domain CPS0D_RS04845 PF00113 Enolase, C-terminal TIM barrel domain CPS0D_RS04870 PF13085 2Fe-2S iron-sulfur cluster binding domain CPS0D_RS04870 PF13183 4Fe-4S dicluster domain CPS0D_RS04875 PF00890 FAD binding domain CPS0D_RS04875 PF02910 Fumarate reductase flavoprotein C-term CPS0D_RS04885 PF01026 TatD related DNase CPS0D_RS04895 PF01618 MotA/TolQ/ExbB proton channel family CPS0D_RS04900 PF02472 Biopolymer transport protein ExbD/TolR CPS0D_RS04910 PF07676 WD40-like Beta Propeller Repeat CPS0D_RS04915 PF00691 OmpA family CPS0D_RS04930 PF00578 AhpC/TSA family CPS0D_RS04930 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPS0D_RS04940 PF00118 TCP-1/cpn60 chaperonin family CPS0D_RS04945 PF07075 Protein of unknown function (DUF1343) CPS0D_RS04950 PF01725 Ham1 family CPS0D_RS04960 PF03167 Uracil DNA glycosylase superfamily CPS0D_RS04965 PF00580 UvrD/REP helicase N-terminal domain CPS0D_RS04965 PF13361 UvrD-like helicase C-terminal domain CPS0D_RS04970 PF04552 Sigma-54, DNA binding domain CPS0D_RS04970 PF04963 Sigma-54 factor, core binding domain CPS0D_RS04970 PF00309 Sigma-54 factor, Activator interacting domain (AID) CPS0D_RS04980 PF01751 Toprim domain CPS0D_RS04980 PF01396 Topoisomerase DNA binding C4 zinc finger CPS0D_RS04980 PF01131 DNA topoisomerase CPS0D_RS04985 PF01207 Dihydrouridine synthase (Dus) CPS0D_RS04990 PF02325 YGGT family CPS0D_RS05010 PF01812 5-formyltetrahydrofolate cyclo-ligase family CPS0D_RS05015 PF00154 recA bacterial DNA recombination protein CPS0D_RS05020 PF03070 TENA/THI-4/PQQC family CPS0D_RS05030 PF00186 Dihydrofolate reductase CPS0D_RS05035 PF00809 Pterin binding enzyme CPS0D_RS05035 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CPS0D_RS05040 PF02152 Dihydroneopterin aldolase CPS0D_RS05045 PF03979 Sigma-70 factor, region 1.1 CPS0D_RS05045 PF00140 Sigma-70 factor, region 1.2 CPS0D_RS05045 PF04545 Sigma-70, region 4 CPS0D_RS05045 PF04542 Sigma-70 region 2 CPS0D_RS05045 PF04539 Sigma-70 region 3 CPS0D_RS05050 PF06785 Uncharacterised protein family (UPF0242) N-terminus CPS0D_RS05050 PF18095 UPF0242 C-terminal PAS-like domain CPS0D_RS05055 PF01649 Ribosomal protein S20 CPS0D_RS05065 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CPS0D_RS05065 PF14490 Helix-hairpin-helix containing domain CPS0D_RS05065 PF13538 UvrD-like helicase C-terminal domain CPS0D_RS05075 PF00486 Transcriptional regulatory protein, C terminal CPS0D_RS05080 PF00132 Bacterial transferase hexapeptide (six repeats) CPS0D_RS05080 PF14602 Hexapeptide repeat of succinyl-transferase CPS0D_RS05080 PF12804 MobA-like NTP transferase domain CPS0D_RS05085 PF00348 Polyprenyl synthetase CPS0D_RS05100 PF02511 Thymidylate synthase complementing protein