locus-tag	class	description
CPS0C_RS00005	PF00490	Delta-aminolevulinic acid dehydratase
CPS0C_RS00010	PF11973	NQRA C-terminal domain
CPS0C_RS00010	PF05896	Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
CPS0C_RS00020	PF03449	Transcription elongation factor, N-terminal
CPS0C_RS00020	PF01272	Transcription elongation factor, GreA/GreB, C-term
CPS0C_RS00030	PF00155	Aminotransferase class I and II
CPS0C_RS00040	PF00580	UvrD/REP helicase N-terminal domain
CPS0C_RS00040	PF13361	UvrD-like helicase C-terminal domain
CPS0C_RS00050	PF07690	Major Facilitator Superfamily
CPS0C_RS00055	PF00581	Rhodanese-like domain
CPS0C_RS00055	PF12368	Rhodanase C-terminal
CPS0C_RS00055	PF17773	UPF0176 acylphosphatase like domain
CPS0C_RS00060	PF01479	S4 domain
CPS0C_RS00060	PF00163	Ribosomal protein S4/S9 N-terminal domain
CPS0C_RS00065	PF01261	Xylose isomerase-like TIM barrel
CPS0C_RS00070	PF03023	Lipid II flippase MurJ
CPS0C_RS00100	PF00005	ABC transporter
CPS0C_RS00110	PF00793	DAHP synthetase I family
CPS0C_RS00125	PF01479	S4 domain
CPS0C_RS00125	PF00849	RNA pseudouridylate synthase
CPS0C_RS00140	PF00521	DNA gyrase/topoisomerase IV, subunit A
CPS0C_RS00145	PF01751	Toprim domain
CPS0C_RS00145	PF00986	DNA gyrase B subunit, carboxyl terminus
CPS0C_RS00145	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CPS0C_RS00145	PF00204	DNA gyrase B
CPS0C_RS00150	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
CPS0C_RS00155	PF05932	Tir chaperone protein (CesT) family
CPS0C_RS00165	PF17376	Family of unknown function (DUF5398)
CPS0C_RS00170	PF17401	Family of unknown function (DUF5407)
CPS0C_RS00185	PF18269	T3SS EscN ATPase C-terminal domain
CPS0C_RS00185	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CPS0C_RS00185	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CPS0C_RS00195	PF17458	Family of unknown function (DUF5421)
CPS0C_RS00200	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
CPS0C_RS00205	PF00069	Protein kinase domain
CPS0C_RS00205	PF03793	PASTA domain
CPS0C_RS00210	PF00263	Bacterial type II and III secretion system protein
CPS0C_RS00210	PF03958	Bacterial type II/III secretion system short domain
CPS0C_RS00220	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
CPS0C_RS00225	PF02151	UvrB/uvrC motif
CPS0C_RS00240	PF01765	Ribosome recycling factor
CPS0C_RS00245	PF00696	Amino acid kinase family
CPS0C_RS00250	PF00889	Elongation factor TS
CPS0C_RS00255	PF00318	Ribosomal protein S2
CPS0C_RS00265	PF01308	Chlamydia major outer membrane protein
CPS0C_RS00270	PF00905	Penicillin binding protein transpeptidase domain
CPS0C_RS00280	PF01458	Uncharacterized protein family (UPF0051)
CPS0C_RS00285	PF00005	ABC transporter
CPS0C_RS00290	PF01458	Uncharacterized protein family (UPF0051)
CPS0C_RS00295	PF00266	Aminotransferase class-V
CPS0C_RS00310	PF17762	HTH domain found in ParB protein
CPS0C_RS00310	PF02195	ParB-like nuclease domain
CPS0C_RS00315	PF00005	ABC transporter
CPS0C_RS00315	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CPS0C_RS00320	PF00005	ABC transporter
CPS0C_RS00320	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CPS0C_RS00325	PF01865	Protein of unknown function DUF47
CPS0C_RS00330	PF01384	Phosphate transporter family
CPS0C_RS00335	PF00162	Phosphoglycerate kinase
CPS0C_RS00355	PF01189	16S rRNA methyltransferase RsmB/F
CPS0C_RS00355	PF01029	NusB family
CPS0C_RS00365	PF00768	D-alanyl-D-alanine carboxypeptidase
CPS0C_RS00365	PF07943	Penicillin-binding protein 5, C-terminal domain
CPS0C_RS00395	PF02811	PHP domain
CPS0C_RS00395	PF14579	Helix-hairpin-helix motif
CPS0C_RS00395	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
CPS0C_RS00395	PF07733	Bacterial DNA polymerase III alpha NTPase domain
CPS0C_RS00400	PF07690	Major Facilitator Superfamily
CPS0C_RS00410	PF13393	Histidyl-tRNA synthetase
CPS0C_RS00410	PF03129	Anticodon binding domain
CPS0C_RS00415	PF02938	GAD domain
CPS0C_RS00415	PF00152	tRNA synthetases class II (D, K and N) 
CPS0C_RS00415	PF01336	OB-fold nucleic acid binding domain
CPS0C_RS00420	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CPS0C_RS00420	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
CPS0C_RS00425	PF00588	SpoU rRNA Methylase family
CPS0C_RS00430	PF00085	Thioredoxin
CPS0C_RS00440	PF10915	Protein of unknown function (DUF2709)
CPS0C_RS00450	PF00929	Exonuclease
CPS0C_RS00455	PF03061	Thioesterase superfamily
CPS0C_RS00460	PF00795	Carbon-nitrogen hydrolase
CPS0C_RS00465	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
CPS0C_RS00470	PF07977	FabA-like domain
CPS0C_RS00475	PF00132	Bacterial transferase hexapeptide (six repeats)
CPS0C_RS00475	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
CPS0C_RS00480	PF02911	Formyl transferase, C-terminal domain
CPS0C_RS00480	PF00551	Formyl transferase
CPS0C_RS00490	PF00297	Ribosomal protein L3
CPS0C_RS00495	PF00573	Ribosomal protein L4/L1 family
CPS0C_RS00500	PF00276	Ribosomal protein L23
CPS0C_RS00505	PF03947	Ribosomal Proteins L2, C-terminal domain
CPS0C_RS00505	PF00181	Ribosomal Proteins L2, RNA binding domain
CPS0C_RS00510	PF00203	Ribosomal protein S19
CPS0C_RS00515	PF00237	Ribosomal protein L22p/L17e
CPS0C_RS00520	PF07650	KH domain
CPS0C_RS00520	PF00189	Ribosomal protein S3, C-terminal domain
CPS0C_RS00525	PF00252	Ribosomal protein L16p/L10e
CPS0C_RS00530	PF00831	Ribosomal L29 protein
CPS0C_RS00535	PF00366	Ribosomal protein S17
CPS0C_RS00540	PF00238	Ribosomal protein L14p/L23e
CPS0C_RS00545	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
CPS0C_RS00545	PF00467	KOW motif
CPS0C_RS00550	PF00281	Ribosomal protein L5
CPS0C_RS00550	PF00673	ribosomal L5P family C-terminus
CPS0C_RS00555	PF00410	Ribosomal protein S8
CPS0C_RS00560	PF00347	Ribosomal protein L6
CPS0C_RS00565	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
CPS0C_RS00570	PF03719	Ribosomal protein S5, C-terminal domain
CPS0C_RS00570	PF00333	Ribosomal protein S5, N-terminal domain
CPS0C_RS00575	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
CPS0C_RS00580	PF00344	SecY translocase
CPS0C_RS00585	PF00416	Ribosomal protein S13/S18
CPS0C_RS00590	PF00411	Ribosomal protein S11
CPS0C_RS00595	PF01000	RNA polymerase Rpb3/RpoA insert domain
CPS0C_RS00595	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
CPS0C_RS00595	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
CPS0C_RS00600	PF01196	Ribosomal protein L17
CPS0C_RS00605	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CPS0C_RS00605	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CPS0C_RS00625	PF02075	Crossover junction endodeoxyribonuclease RuvC
CPS0C_RS00630	PF01330	RuvA N terminal domain
CPS0C_RS00635	PF00334	Nucleoside diphosphate kinase
CPS0C_RS00645	PF01134	Glucose inhibited division protein A
CPS0C_RS00645	PF13932	GidA associated domain
CPS0C_RS00650	PF00772	DnaB-like helicase N terminal domain
CPS0C_RS00650	PF03796	DnaB-like helicase C terminal domain
CPS0C_RS00660	PF01066	CDP-alcohol phosphatidyltransferase
CPS0C_RS00665	PF03219	TLC ATP/ADP transporter
CPS0C_RS00670	PF01343	Peptidase family S49
CPS0C_RS00675	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CPS0C_RS00675	PF00476	DNA polymerase family A
CPS0C_RS00675	PF01367	5'-3' exonuclease, C-terminal SAM fold
CPS0C_RS00680	PF01121	Dephospho-CoA kinase
CPS0C_RS00685	PF07497	Rho termination factor, RNA-binding domain
CPS0C_RS00685	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CPS0C_RS00685	PF07498	Rho termination factor, N-terminal domain
CPS0C_RS00695	PF00156	Phosphoribosyl transferase domain
CPS0C_RS00700	PF00483	Nucleotidyl transferase
CPS0C_RS00720	PF00762	Ferrochelatase
CPS0C_RS00750	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS00755	PF12911	N-terminal TM domain of oligopeptide transport permease C
CPS0C_RS00755	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS00760	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CPS0C_RS00760	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CPS0C_RS00770	PF03483	B3/4 domain
CPS0C_RS00770	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
CPS0C_RS00770	PF03484	tRNA synthetase B5 domain
CPS0C_RS00770	PF03147	Ferredoxin-fold anticodon binding domain
CPS0C_RS00770	PF01588	Putative tRNA binding domain
CPS0C_RS00775	PF01476	LysM domain
CPS0C_RS00795	PF02565	Recombination protein O C terminal
CPS0C_RS00815	PF00158	Sigma-54 interaction domain
CPS0C_RS00815	PF00072	Response regulator receiver domain
CPS0C_RS00815	PF02954	Bacterial regulatory protein, Fis family
CPS0C_RS00825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CPS0C_RS00825	PF00512	His Kinase A (phospho-acceptor) domain
CPS0C_RS00845	PF13419	Haloacid dehalogenase-like hydrolase
CPS0C_RS00850	PF01416	tRNA pseudouridine synthase
CPS0C_RS00855	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CPS0C_RS00860	PF00149	Calcineurin-like phosphoesterase
CPS0C_RS00870	PF00472	RF-1 domain
CPS0C_RS00870	PF03462	PCRF domain
CPS0C_RS00885	PF01709	Transcriptional regulator
CPS0C_RS00895	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CPS0C_RS00900	PF03485	Arginyl tRNA synthetase N terminal domain
CPS0C_RS00900	PF05746	DALR anticodon binding domain
CPS0C_RS00900	PF00750	tRNA synthetases class I (R)
CPS0C_RS00910	PF02224	Cytidylate kinase
CPS0C_RS00920	PF01255	Putative undecaprenyl diphosphate synthase
CPS0C_RS00930	PF02355	Protein export membrane protein
CPS0C_RS00930	PF07549	SecD/SecF GG Motif
CPS0C_RS00935	PF17768	RecJ OB domain
CPS0C_RS00935	PF01368	DHH family
CPS0C_RS00935	PF02272	DHHA1 domain
CPS0C_RS00945	PF12728	Helix-turn-helix domain
CPS0C_RS00950	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CPS0C_RS00960	PF03503	Chlamydia cysteine-rich outer membrane protein 3
CPS0C_RS00965	PF01345	Domain of unknown function DUF11
CPS0C_RS00965	PF03504	Chlamydia cysteine-rich outer membrane protein 6
CPS0C_RS00970	PF05745	Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
CPS0C_RS00975	PF17804	Tail specific protease N-terminal domain
CPS0C_RS00975	PF03572	Peptidase family S41
CPS0C_RS00975	PF00595	PDZ domain
CPS0C_RS00975	PF11818	C-terminal domain of tail specific protease (DUF3340)
CPS0C_RS00990	PF00164	Ribosomal protein S12/S23
CPS0C_RS00995	PF00177	Ribosomal protein S7p/S5e
CPS0C_RS01000	PF14492	Elongation Factor G, domain II
CPS0C_RS01000	PF03764	Elongation factor G, domain IV
CPS0C_RS01000	PF00009	Elongation factor Tu GTP binding domain
CPS0C_RS01000	PF03144	Elongation factor Tu domain 2
CPS0C_RS01000	PF00679	Elongation factor G C-terminus
CPS0C_RS01005	PF00338	Ribosomal protein S10p/S20e
CPS0C_RS01010	PF00258	Flavodoxin
CPS0C_RS01010	PF00175	Oxidoreductase NAD-binding domain 
CPS0C_RS01010	PF00667	FAD binding domain
CPS0C_RS01015	PF02542	YgbB family
CPS0C_RS01030	PF00829	Ribosomal prokaryotic L21 protein
CPS0C_RS01035	PF01016	Ribosomal L27 protein
CPS0C_RS01040	PF01926	50S ribosome-binding GTPase
CPS0C_RS01040	PF01018	GTP1/OBG
CPS0C_RS01045	PF00005	ABC transporter
CPS0C_RS01050	PF01297	Zinc-uptake complex component A periplasmic
CPS0C_RS01060	PF02581	Thiamine monophosphate synthase
CPS0C_RS01065	PF02110	Hydroxyethylthiazole kinase family
CPS0C_RS01070	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01070	PF03797	Autotransporter beta-domain
CPS0C_RS01070	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01075	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01075	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01090	PF01235	Sodium:alanine symporter family
CPS0C_RS01095	PF01252	Signal peptidase (SPase) II
CPS0C_RS01100	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CPS0C_RS01105	PF03477	ATP cone domain
CPS0C_RS01110	PF00677	Lumazine binding domain
CPS0C_RS01115	PF10672	S-adenosylmethionine-dependent methyltransferase
CPS0C_RS01120	PF00588	SpoU rRNA Methylase family
CPS0C_RS01125	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
CPS0C_RS01130	PF00375	Sodium:dicarboxylate symporter family
CPS0C_RS01135	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CPS0C_RS01135	PF00364	Biotin-requiring enzyme
CPS0C_RS01135	PF02817	e3 binding domain
CPS0C_RS01140	PF01380	SIS domain
CPS0C_RS01140	PF00571	CBS domain
CPS0C_RS01165	PF00464	Serine hydroxymethyltransferase
CPS0C_RS01170	PF00574	Clp protease
CPS0C_RS01175	PF01678	Diaminopimelate epimerase
CPS0C_RS01180	PF03682	Uncharacterised protein family (UPF0158)
CPS0C_RS01185	PF01209	ubiE/COQ5 methyltransferase family
CPS0C_RS01195	PF04055	Radical SAM superfamily
CPS0C_RS01205	PF12228	Protein of unknown function (DUF3604)
CPS0C_RS01210	PF01740	STAS domain
CPS0C_RS01215	PF03471	Transporter associated domain
CPS0C_RS01215	PF00571	CBS domain
CPS0C_RS01220	PF02130	Uncharacterized protein family UPF0054
CPS0C_RS01230	PF02245	Methylpurine-DNA glycosylase (MPG)
CPS0C_RS01235	PF00773	RNB domain
CPS0C_RS01235	PF08206	Ribonuclease B OB domain
CPS0C_RS01240	PF00012	Hsp70 protein
CPS0C_RS01245	PF01025	GrpE
CPS0C_RS01250	PF01628	HrcA protein C terminal domain
CPS0C_RS01255	PF04073	Aminoacyl-tRNA editing domain
CPS0C_RS01255	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CPS0C_RS01255	PF03129	Anticodon binding domain
CPS0C_RS01270	PF02594	Uncharacterised ACR, YggU family COG1872
CPS0C_RS01280	PF00155	Aminotransferase class I and II
CPS0C_RS01300	PF03690	Uncharacterised protein family (UPF0160)
CPS0C_RS01305	PF01230	HIT domain
CPS0C_RS01330	PF18152	DAHP synthase ferredoxin-like domain
CPS0C_RS01330	PF00793	DAHP synthetase I family
CPS0C_RS01340	PF00497	Bacterial extracellular solute-binding proteins, family 3
CPS0C_RS01350	PF12706	Beta-lactamase superfamily domain
CPS0C_RS01350	PF03099	Biotin/lipoate A/B protein ligase family
CPS0C_RS01355	PF01926	50S ribosome-binding GTPase
CPS0C_RS01355	PF16360	GTP-binding GTPase Middle Region
CPS0C_RS01355	PF13167	GTP-binding GTPase N-terminal
CPS0C_RS01360	PF00919	Uncharacterized protein family UPF0004
CPS0C_RS01360	PF04055	Radical SAM superfamily
CPS0C_RS01370	PF00128	Alpha amylase, catalytic domain
CPS0C_RS01370	PF02806	Alpha amylase, C-terminal all-beta domain
CPS0C_RS01370	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CPS0C_RS01385	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01385	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01385	PF03797	Autotransporter beta-domain
CPS0C_RS01400	PF03797	Autotransporter beta-domain
CPS0C_RS01400	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01400	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01405	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01405	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01410	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01410	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01420	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01425	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01425	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01430	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01430	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01435	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01440	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01440	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01445	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01450	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01450	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01460	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01460	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01465	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01465	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01470	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS01470	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS01480	PF02686	Glu-tRNAGln amidotransferase C subunit
CPS0C_RS01485	PF01425	Amidase
CPS0C_RS01490	PF02637	GatB domain
CPS0C_RS01490	PF02934	GatB/GatE catalytic domain
CPS0C_RS01495	PF17461	Family of unknown function (DUF5423)
CPS0C_RS01510	PF01351	Ribonuclease HII
CPS0C_RS01510	PF11858	Domain of unknown function (DUF3378)
CPS0C_RS01540	PF11019	Protein of unknown function (DUF2608)
CPS0C_RS01545	PF11019	Protein of unknown function (DUF2608)
CPS0C_RS01555	PF03190	Protein of unknown function, DUF255
CPS0C_RS01565	PF00398	Ribosomal RNA adenine dimethylase
CPS0C_RS01570	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
CPS0C_RS01570	PF02780	Transketolase, C-terminal domain
CPS0C_RS01570	PF02779	Transketolase, pyrimidine binding domain
CPS0C_RS01580	PF02609	Exonuclease VII small subunit
CPS0C_RS01585	PF02601	Exonuclease VII, large subunit
CPS0C_RS01585	PF13742	OB-fold nucleic acid binding domain
CPS0C_RS01590	PF00121	Triosephosphate isomerase
CPS0C_RS01600	PF01327	Polypeptide deformylase
CPS0C_RS01615	PF02545	Maf-like protein
CPS0C_RS01620	PF12848	ABC transporter
CPS0C_RS01620	PF00005	ABC transporter
CPS0C_RS01625	PF13495	Phage integrase, N-terminal SAM-like domain
CPS0C_RS01625	PF00589	Phage integrase family
CPS0C_RS01630	PF12706	Beta-lactamase superfamily domain
CPS0C_RS01630	PF00753	Metallo-beta-lactamase superfamily
CPS0C_RS01640	PF00004	ATPase family associated with various cellular activities (AAA)
CPS0C_RS01640	PF05362	Lon protease (S16) C-terminal proteolytic domain
CPS0C_RS01640	PF02190	ATP-dependent protease La (LON) substrate-binding domain 
CPS0C_RS01645	PF00814	Glycoprotease family
CPS0C_RS01650	PF01165	Ribosomal protein S21
CPS0C_RS01655	PF01556	DnaJ C terminal domain
CPS0C_RS01655	PF00684	DnaJ central domain
CPS0C_RS01655	PF00226	DnaJ domain
CPS0C_RS01660	PF02779	Transketolase, pyrimidine binding domain
CPS0C_RS01660	PF02780	Transketolase, C-terminal domain
CPS0C_RS01680	PF00381	PTS HPr component phosphorylation site
CPS0C_RS01685	PF02896	PEP-utilising enzyme, TIM barrel domain
CPS0C_RS01685	PF05524	PEP-utilising enzyme, N-terminal
CPS0C_RS01685	PF00391	PEP-utilising enzyme, mobile domain
CPS0C_RS01690	PF02575	YbaB/EbfC DNA-binding family
CPS0C_RS01695	PF12169	DNA polymerase III subunits gamma and tau domain III
CPS0C_RS01700	PF01966	HD domain
CPS0C_RS01700	PF07697	7TM-HD extracellular
CPS0C_RS01700	PF07698	7TM receptor with intracellular HD hydrolase
CPS0C_RS01720	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
CPS0C_RS01725	PF18073	Rubredoxin metal binding domain
CPS0C_RS01730	PF00035	Double-stranded RNA binding motif
CPS0C_RS01730	PF14622	Ribonuclease-III-like
CPS0C_RS01740	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CPS0C_RS01740	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CPS0C_RS01740	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CPS0C_RS01740	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CPS0C_RS01745	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
CPS0C_RS01745	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
CPS0C_RS01750	PF17848	Acetyl-coA carboxylase zinc finger domain
CPS0C_RS01750	PF01039	Carboxyl transferase domain
CPS0C_RS01755	PF00692	dUTPase
CPS0C_RS01760	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CPS0C_RS01765	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CPS0C_RS01795	PF10431	C-terminal, D2-small domain, of ClpB protein 
CPS0C_RS01795	PF02861	Clp amino terminal domain, pathogenicity island component
CPS0C_RS01795	PF17871	AAA lid domain
CPS0C_RS01795	PF00004	ATPase family associated with various cellular activities (AAA)
CPS0C_RS01795	PF07724	AAA domain (Cdc48 subfamily)
CPS0C_RS01805	PF13091	PLD-like domain
CPS0C_RS01805	PF13396	Phospholipase_D-nuclease N-terminal
CPS0C_RS01815	PF01597	Glycine cleavage H-protein
CPS0C_RS01830	PF02508	Rnf-Nqr subunit, membrane protein
CPS0C_RS01835	PF02508	Rnf-Nqr subunit, membrane protein
CPS0C_RS01840	PF04205	FMN-binding domain
CPS0C_RS01845	PF03116	NQR2, RnfD, RnfE family
CPS0C_RS01860	PF00308	Bacterial dnaA  protein
CPS0C_RS01860	PF11638	DnaA N-terminal domain
CPS0C_RS01860	PF08299	Bacterial dnaA protein helix-turn-helix
CPS0C_RS01870	PF17377	Family of unknown function (DUF5399)
CPS0C_RS01875	PF01795	MraW methylase family
CPS0C_RS01885	PF00905	Penicillin binding protein transpeptidase domain
CPS0C_RS01885	PF03717	Penicillin-binding Protein dimerisation domain
CPS0C_RS01895	PF08245	Mur ligase middle domain
CPS0C_RS01895	PF02875	Mur ligase family, glutamate ligase domain
CPS0C_RS01895	PF01225	Mur ligase family, catalytic domain
CPS0C_RS01900	PF01520	N-acetylmuramoyl-L-alanine amidase
CPS0C_RS01900	PF08239	Bacterial SH3 domain
CPS0C_RS01910	PF00216	Bacterial DNA-binding protein
CPS0C_RS01920	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
CPS0C_RS01925	PF00664	ABC transporter transmembrane region
CPS0C_RS01925	PF00005	ABC transporter
CPS0C_RS01935	PF02621	Menaquinone biosynthesis
CPS0C_RS01975	PF00849	RNA pseudouridylate synthase
CPS0C_RS01975	PF01479	S4 domain
CPS0C_RS01980	PF00633	Helix-hairpin-helix motif
CPS0C_RS01980	PF00730	HhH-GPD superfamily base excision DNA repair protein
CPS0C_RS01980	PF14815	NUDIX domain
CPS0C_RS01990	PF02517	CPBP intramembrane metalloprotease
CPS0C_RS02020	PF00266	Aminotransferase class-V
CPS0C_RS02025	PF03471	Transporter associated domain
CPS0C_RS02025	PF00571	CBS domain
CPS0C_RS02030	PF01595	Cyclin M transmembrane N-terminal domain
CPS0C_RS02030	PF03471	Transporter associated domain
CPS0C_RS02030	PF00571	CBS domain
CPS0C_RS02040	PF00692	dUTPase
CPS0C_RS02045	PF05491	RuvB C-terminal winged helix domain
CPS0C_RS02045	PF05496	Holliday junction DNA helicase RuvB P-loop domain
CPS0C_RS02045	PF17864	RuvB AAA lid domain
CPS0C_RS02050	PF08486	Stage II sporulation protein
CPS0C_RS02055	PF00128	Alpha amylase, catalytic domain
CPS0C_RS02055	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CPS0C_RS02065	PF00436	Single-strand binding protein family
CPS0C_RS02070	PF02789	Cytosol aminopeptidase family, N-terminal domain
CPS0C_RS02070	PF00883	Cytosol aminopeptidase family, catalytic domain
CPS0C_RS02075	PF07382	Histone H1-like nucleoprotein HC2
CPS0C_RS02105	PF04055	Radical SAM superfamily
CPS0C_RS02105	PF06969	HemN C-terminal domain
CPS0C_RS02115	PF02779	Transketolase, pyrimidine binding domain
CPS0C_RS02115	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CPS0C_RS02115	PF16078	2-oxoglutarate dehydrogenase N-terminus
CPS0C_RS02115	PF00676	Dehydrogenase E1 component
CPS0C_RS02115	PF16870	2-oxoglutarate dehydrogenase C-terminal
CPS0C_RS02120	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CPS0C_RS02120	PF00364	Biotin-requiring enzyme
CPS0C_RS02120	PF02817	e3 binding domain
CPS0C_RS02130	PF04551	GcpE protein
CPS0C_RS02150	PF00111	2Fe-2S iron-sulfur cluster binding domain
CPS0C_RS02160	PF00771	FHIPEP family
CPS0C_RS02165	PF04539	Sigma-70 region 3
CPS0C_RS02165	PF04542	Sigma-70 region 2 
CPS0C_RS02165	PF04545	Sigma-70, region 4
CPS0C_RS02175	PF01479	S4 domain
CPS0C_RS02175	PF00579	tRNA synthetases class I (W and Y)
CPS0C_RS02180	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
CPS0C_RS02180	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CPS0C_RS02185	PF06421	GTP-binding protein LepA C-terminus
CPS0C_RS02185	PF03144	Elongation factor Tu domain 2
CPS0C_RS02185	PF00009	Elongation factor Tu GTP binding domain
CPS0C_RS02185	PF00679	Elongation factor G C-terminus
CPS0C_RS02195	PF03219	TLC ATP/ADP transporter
CPS0C_RS02205	PF01297	Zinc-uptake complex component A periplasmic
CPS0C_RS02210	PF00005	ABC transporter
CPS0C_RS02215	PF00950	ABC 3 transport family
CPS0C_RS02215	PF02742	Iron dependent repressor, metal binding and dimerisation domain
CPS0C_RS02220	PF00950	ABC 3 transport family
CPS0C_RS02225	PF13288	DXP reductoisomerase C-terminal domain
CPS0C_RS02225	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
CPS0C_RS02225	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
CPS0C_RS02230	PF02163	Peptidase family M50
CPS0C_RS02240	PF02463	RecF/RecN/SMC N terminal domain
CPS0C_RS02245	PF00712	DNA polymerase III beta subunit, N-terminal domain
CPS0C_RS02245	PF02767	DNA polymerase III beta subunit, central domain
CPS0C_RS02245	PF02768	DNA polymerase III beta subunit, C-terminal domain
CPS0C_RS02250	PF01668	SmpB protein
CPS0C_RS02255	PF02424	ApbE family
CPS0C_RS02260	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CPS0C_RS02260	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
CPS0C_RS02265	PF17455	Late transcription unit B
CPS0C_RS02280	PF13091	PLD-like domain
CPS0C_RS02285	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
CPS0C_RS02290	PF00830	Ribosomal L28 family
CPS0C_RS02295	PF02446	4-alpha-glucanotransferase
CPS0C_RS02310	PF00771	FHIPEP family
CPS0C_RS02315	PF01312	FlhB HrpN YscU SpaS Family
CPS0C_RS02320	PF06071	Protein of unknown function (DUF933)
CPS0C_RS02320	PF01926	50S ribosome-binding GTPase
CPS0C_RS02325	PF01687	Riboflavin kinase
CPS0C_RS02325	PF06574	FAD synthetase
CPS0C_RS02330	PF01509	TruB family pseudouridylate synthase (N terminal domain)
CPS0C_RS02330	PF16198	tRNA pseudouridylate synthase B C-terminal domain
CPS0C_RS02335	PF02033	Ribosome-binding factor A
CPS0C_RS02340	PF00009	Elongation factor Tu GTP binding domain
CPS0C_RS02340	PF11987	Translation-initiation factor 2
CPS0C_RS02345	PF13184	NusA-like KH domain
CPS0C_RS02345	PF08529	NusA N-terminal domain
CPS0C_RS02350	PF00575	S1 RNA binding domain
CPS0C_RS02355	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CPS0C_RS02360	PF01648	4'-phosphopantetheinyl transferase superfamily
CPS0C_RS02370	PF01790	Prolipoprotein diacylglyceryl transferase
CPS0C_RS02375	PF02096	60Kd inner membrane protein
CPS0C_RS02380	PF08299	Bacterial dnaA protein helix-turn-helix
CPS0C_RS02380	PF00308	Bacterial dnaA  protein
CPS0C_RS02390	PF00343	Carbohydrate phosphorylase
CPS0C_RS02395	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CPS0C_RS02395	PF00364	Biotin-requiring enzyme
CPS0C_RS02395	PF02817	e3 binding domain
CPS0C_RS02400	PF00364	Biotin-requiring enzyme
CPS0C_RS02400	PF02780	Transketolase, C-terminal domain
CPS0C_RS02400	PF02779	Transketolase, pyrimidine binding domain
CPS0C_RS02405	PF00676	Dehydrogenase E1 component
CPS0C_RS02415	PF00132	Bacterial transferase hexapeptide (six repeats)
CPS0C_RS02415	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD  
CPS0C_RS02420	PF03938	Outer membrane protein (OmpH-like)
CPS0C_RS02425	PF07244	Surface antigen variable number repeat
CPS0C_RS02425	PF01103	Surface antigen
CPS0C_RS02430	PF13662	Toprim domain
CPS0C_RS02435	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
CPS0C_RS02435	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CPS0C_RS02440	PF00698	Acyl transferase domain
CPS0C_RS02450	PF00550	Phosphopantetheine attachment site
CPS0C_RS02475	PF00209	Sodium:neurotransmitter symporter family
CPS0C_RS02480	PF00375	Sodium:dicarboxylate symporter family
CPS0C_RS02495	PF01769	Divalent cation transporter
CPS0C_RS02495	PF00571	CBS domain
CPS0C_RS02495	PF03448	MgtE intracellular N domain
CPS0C_RS02505	PF13520	Amino acid permease
CPS0C_RS02510	PF01791	DeoC/LacD family aldolase
CPS0C_RS02520	PF09383	NIL domain
CPS0C_RS02520	PF00005	ABC transporter
CPS0C_RS02525	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS02530	PF03180	NLPA lipoprotein
CPS0C_RS02545	PF01751	Toprim domain
CPS0C_RS02545	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CPS0C_RS02545	PF00986	DNA gyrase B subunit, carboxyl terminus
CPS0C_RS02545	PF00204	DNA gyrase B
CPS0C_RS02550	PF00521	DNA gyrase/topoisomerase IV, subunit A
CPS0C_RS02550	PF03989	DNA gyrase C-terminal domain, beta-propeller
CPS0C_RS02555	PF02223	Thymidylate kinase
CPS0C_RS02570	PF01300	Telomere recombination
CPS0C_RS02570	PF03481	Putative GTP-binding controlling metal-binding
CPS0C_RS02595	PF01040	UbiA prenyltransferase family
CPS0C_RS02600	PF02441	Flavoprotein
CPS0C_RS02605	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CPS0C_RS02605	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
CPS0C_RS02620	PF01975	Survival protein SurE
CPS0C_RS02625	PF01171	PP-loop family
CPS0C_RS02630	PF07516	SecA Wing and Scaffold domain
CPS0C_RS02630	PF01043	SecA preprotein cross-linking domain
CPS0C_RS02630	PF07517	SecA DEAD-like domain
CPS0C_RS02630	PF02810	SEC-C motif
CPS0C_RS02660	PF18693	TRAM domain
CPS0C_RS02660	PF04055	Radical SAM superfamily
CPS0C_RS02660	PF00919	Uncharacterized protein family UPF0004
CPS0C_RS02665	PF00471	Ribosomal protein L33
CPS0C_RS02675	PF00005	ABC transporter
CPS0C_RS02685	PF00572	Ribosomal protein L13
CPS0C_RS02690	PF00380	Ribosomal protein S9/S16
CPS0C_RS02720	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
CPS0C_RS02725	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
CPS0C_RS02725	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
CPS0C_RS02730	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CPS0C_RS02735	PF00814	Glycoprotease family
CPS0C_RS02740	PF02863	Arginine repressor, C-terminal domain
CPS0C_RS02740	PF01316	Arginine repressor, DNA binding domain
CPS0C_RS02745	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS02750	PF00005	ABC transporter
CPS0C_RS02765	PF03631	Virulence factor BrkB
CPS0C_RS02780	PF00834	Ribulose-phosphate 3 epimerase family
CPS0C_RS02785	PF08207	Elongation factor P (EF-P) KOW-like domain
CPS0C_RS02785	PF01132	Elongation factor P (EF-P) OB domain
CPS0C_RS02785	PF09285	Elongation factor P, C-terminal
CPS0C_RS02790	PF00364	Biotin-requiring enzyme
CPS0C_RS02795	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPS0C_RS02795	PF00289	Biotin carboxylase, N-terminal domain
CPS0C_RS02795	PF02785	Biotin carboxylase C-terminal domain
CPS0C_RS02860	PF00962	Adenosine/AMP deaminase
CPS0C_RS02865	PF02540	NAD synthase
CPS0C_RS02865	PF00958	GMP synthase C terminal domain
CPS0C_RS02865	PF00117	Glutamine amidotransferase class-I
CPS0C_RS02870	PF00571	CBS domain
CPS0C_RS02870	PF00478	IMP dehydrogenase / GMP reductase domain
CPS0C_RS02905	PF01702	Queuine tRNA-ribosyltransferase
CPS0C_RS02925	PF02600	Disulfide bond formation protein DsbB
CPS0C_RS02945	PF00005	ABC transporter
CPS0C_RS02970	PF02348	Cytidylyltransferase
CPS0C_RS02975	PF06418	CTP synthase N-terminus
CPS0C_RS02975	PF00117	Glutamine amidotransferase class-I
CPS0C_RS02980	PF03652	Holliday junction resolvase
CPS0C_RS02985	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CPS0C_RS02990	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CPS0C_RS02995	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CPS0C_RS03000	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS03005	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS03005	PF12911	N-terminal TM domain of oligopeptide transport permease C
CPS0C_RS03010	PF00005	ABC transporter
CPS0C_RS03010	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CPS0C_RS03015	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CPS0C_RS03015	PF00005	ABC transporter
CPS0C_RS03020	PF06685	Protein of unknown function (DUF1186)
CPS0C_RS03025	PF00939	Sodium:sulfate symporter transmembrane region
CPS0C_RS03030	PF00365	Phosphofructokinase
CPS0C_RS03040	PF00365	Phosphofructokinase
CPS0C_RS03055	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
CPS0C_RS03060	PF08264	Anticodon-binding domain of tRNA
CPS0C_RS03060	PF09334	tRNA synthetases class I (M)
CPS0C_RS03060	PF13603	Leucyl-tRNA synthetase, Domain 2
CPS0C_RS03070	PF01494	FAD binding domain
CPS0C_RS03080	PF12826	Helix-hairpin-helix motif
CPS0C_RS03080	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
CPS0C_RS03080	PF00533	BRCA1 C Terminus (BRCT) domain
CPS0C_RS03080	PF01653	NAD-dependent DNA ligase adenylation domain
CPS0C_RS03080	PF03120	NAD-dependent DNA ligase OB-fold domain
CPS0C_RS03085	PF00069	Protein kinase domain
CPS0C_RS03085	PF03781	Sulfatase-modifying factor enzyme 1
CPS0C_RS03115	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS03115	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS03120	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS03120	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS03125	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS03125	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
CPS0C_RS03135	PF10431	C-terminal, D2-small domain, of ClpB protein 
CPS0C_RS03135	PF02861	Clp amino terminal domain, pathogenicity island component
CPS0C_RS03135	PF17871	AAA lid domain
CPS0C_RS03135	PF07724	AAA domain (Cdc48 subfamily)
CPS0C_RS03135	PF00004	ATPase family associated with various cellular activities (AAA)
CPS0C_RS03145	PF00005	ABC transporter
CPS0C_RS03150	PF02405	Permease MlaE
CPS0C_RS03155	PF00202	Aminotransferase class-III
CPS0C_RS03160	PF02622	Uncharacterized ACR, COG1678
CPS0C_RS03170	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
CPS0C_RS03195	PF01784	NIF3 (NGG1p interacting factor 3)
CPS0C_RS03200	PF08439	Oligopeptidase F
CPS0C_RS03200	PF01432	Peptidase family M3
CPS0C_RS03205	PF00166	Chaperonin 10 Kd subunit
CPS0C_RS03210	PF00118	TCP-1/cpn60 chaperonin family
CPS0C_RS03230	PF09825	Biotin-protein ligase, N terminal
CPS0C_RS03240	PF13538	UvrD-like helicase C-terminal domain
CPS0C_RS03240	PF14490	Helix-hairpin-helix containing domain
CPS0C_RS03240	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
CPS0C_RS03245	PF08264	Anticodon-binding domain of tRNA
CPS0C_RS03245	PF09334	tRNA synthetases class I (M)
CPS0C_RS03255	PF00625	Guanylate kinase
CPS0C_RS03260	PF01351	Ribonuclease HII
CPS0C_RS03265	PF01245	Ribosomal protein L19
CPS0C_RS03270	PF01746	tRNA (Guanine-1)-methyltransferase
CPS0C_RS03275	PF00886	Ribosomal protein S16
CPS0C_RS03280	PF00448	SRP54-type protein, GTPase domain
CPS0C_RS03280	PF02881	SRP54-type protein, helical bundle domain
CPS0C_RS03280	PF02978	Signal peptide binding domain
CPS0C_RS03285	PF05175	Methyltransferase small domain
CPS0C_RS03285	PF17827	PrmC N-terminal domain
CPS0C_RS03290	PF00472	RF-1 domain
CPS0C_RS03290	PF03462	PCRF domain
CPS0C_RS03295	PF01197	Ribosomal protein L31
CPS0C_RS03305	PF10502	Signal peptidase, peptidase S26 
CPS0C_RS03310	PF00133	tRNA synthetases class I (I, L, M and V)
CPS0C_RS03310	PF08264	Anticodon-binding domain of tRNA
CPS0C_RS03320	PF02562	PhoH-like protein
CPS0C_RS03320	PF13638	PIN domain
CPS0C_RS03340	PF02322	Cytochrome bd terminal oxidase subunit II
CPS0C_RS03345	PF01654	Cytochrome bd terminal oxidase subunit I
CPS0C_RS03350	PF02457	DisA bacterial checkpoint controller nucleotide-binding
CPS0C_RS03365	PF00224	Pyruvate kinase, barrel domain
CPS0C_RS03365	PF02887	Pyruvate kinase, alpha/beta domain
CPS0C_RS03370	PF17755	UvrA DNA-binding domain
CPS0C_RS03370	PF17760	UvrA interaction domain
CPS0C_RS03375	PF00069	Protein kinase domain
CPS0C_RS03380	PF08264	Anticodon-binding domain of tRNA
CPS0C_RS03380	PF00133	tRNA synthetases class I (I, L, M and V)
CPS0C_RS03400	PF01813	ATP synthase subunit D 
CPS0C_RS03405	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CPS0C_RS03405	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CPS0C_RS03410	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CPS0C_RS03410	PF16886	ATPsynthase alpha/beta subunit N-term extension
CPS0C_RS03410	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CPS0C_RS03415	PF10962	Protein of unknown function (DUF2764)
CPS0C_RS03420	PF06188	HrpE/YscL/FliH and V-type ATPase subunit E
CPS0C_RS03435	PF00923	Transaldolase/Fructose-6-phosphate aldolase
CPS0C_RS03440	PF00623	RNA polymerase Rpb1, domain 2
CPS0C_RS03440	PF04998	RNA polymerase Rpb1, domain 5
CPS0C_RS03440	PF05000	RNA polymerase Rpb1, domain 4
CPS0C_RS03440	PF04983	RNA polymerase Rpb1, domain 3
CPS0C_RS03440	PF04997	RNA polymerase Rpb1, domain 1
CPS0C_RS03445	PF04563	RNA polymerase beta subunit
CPS0C_RS03445	PF10385	RNA polymerase beta subunit external 1 domain
CPS0C_RS03445	PF04561	RNA polymerase Rpb2, domain 2
CPS0C_RS03445	PF04565	RNA polymerase Rpb2, domain 3
CPS0C_RS03445	PF04560	RNA polymerase Rpb2, domain 7
CPS0C_RS03445	PF00562	RNA polymerase Rpb2, domain 6
CPS0C_RS03450	PF00542	Ribosomal protein L7/L12 C-terminal domain
CPS0C_RS03450	PF16320	Ribosomal protein L7/L12 dimerisation domain
CPS0C_RS03455	PF00466	Ribosomal protein L10
CPS0C_RS03460	PF00687	Ribosomal protein L1p/L10e family
CPS0C_RS03465	PF00298	Ribosomal protein L11, RNA binding domain
CPS0C_RS03465	PF03946	Ribosomal protein L11, N-terminal domain
CPS0C_RS03470	PF02357	Transcription termination factor nusG
CPS0C_RS03485	PF03144	Elongation factor Tu domain 2
CPS0C_RS03485	PF03143	Elongation factor Tu C-terminal domain
CPS0C_RS03485	PF00009	Elongation factor Tu GTP binding domain
CPS0C_RS03495	PF01176	Translation initiation factor 1A / IF-1
CPS0C_RS03515	PF02632	BioY family
CPS0C_RS03540	PF00701	Dihydrodipicolinate synthetase family
CPS0C_RS03545	PF00696	Amino acid kinase family
CPS0C_RS03550	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CPS0C_RS03550	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CPS0C_RS03560	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
CPS0C_RS03580	PF04055	Radical SAM superfamily
CPS0C_RS03580	PF06968	Biotin and Thiamin Synthesis associated domain
CPS0C_RS03585	PF00155	Aminotransferase class I and II
CPS0C_RS03595	PF00202	Aminotransferase class-III
CPS0C_RS03605	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CPS0C_RS03610	PF01202	Shikimate kinase
CPS0C_RS03615	PF01264	Chorismate synthase
CPS0C_RS03620	PF01761	3-dehydroquinate synthase
CPS0C_RS03625	PF01487	Type I 3-dehydroquinase
CPS0C_RS03625	PF08501	Shikimate dehydrogenase substrate binding domain
CPS0C_RS03625	PF01488	Shikimate / quinate 5-dehydrogenase
CPS0C_RS03630	PF11019	Protein of unknown function (DUF2608)
CPS0C_RS03635	PF04966	Carbohydrate-selective porin, OprB family
CPS0C_RS03640	PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
CPS0C_RS03645	PF13520	Amino acid permease
CPS0C_RS03650	PF01266	FAD dependent oxidoreductase
CPS0C_RS03650	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
CPS0C_RS03660	PF00056	lactate/malate dehydrogenase, NAD binding domain
CPS0C_RS03660	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
CPS0C_RS03665	PF17446	Late transcription unit A
CPS0C_RS03670	PF00342	Phosphoglucose isomerase
CPS0C_RS03675	PF02899	Phage integrase, N-terminal SAM-like domain
CPS0C_RS03675	PF00589	Phage integrase family
CPS0C_RS03715	PF02401	LytB protein
CPS0C_RS03720	PF03572	Peptidase family S41
CPS0C_RS03720	PF17816	PDZ domain
CPS0C_RS03725	PF03600	Citrate transporter
CPS0C_RS03730	PF00916	Sulfate permease family
CPS0C_RS03730	PF01740	STAS domain
CPS0C_RS03735	PF10415	Fumarase C C-terminus
CPS0C_RS03735	PF00206	Lyase
CPS0C_RS03740	PF00528	Binding-protein-dependent transport system inner membrane component
CPS0C_RS03750	PF01914	MarC family integral membrane protein
CPS0C_RS03755	PF00557	Metallopeptidase family M24
CPS0C_RS03755	PF02810	SEC-C motif
CPS0C_RS03795	PF14437	MafB19-like deaminase
CPS0C_RS03800	PF00312	Ribosomal protein S15
CPS0C_RS03805	PF03725	3' exoribonuclease family, domain 2
CPS0C_RS03805	PF01138	3' exoribonuclease family, domain 1
CPS0C_RS03805	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
CPS0C_RS03805	PF00013	KH domain
CPS0C_RS03805	PF00575	S1 RNA binding domain
CPS0C_RS03810	PF17862	AAA+ lid domain
CPS0C_RS03810	PF01434	Peptidase family M41
CPS0C_RS03810	PF00004	ATPase family associated with various cellular activities (AAA)
CPS0C_RS03815	PF01171	PP-loop family
CPS0C_RS03840	PF01409	tRNA synthetases class II core domain (F)
CPS0C_RS03840	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
CPS0C_RS03845	PF00453	Ribosomal protein L20
CPS0C_RS03850	PF01632	Ribosomal protein L35
CPS0C_RS03855	PF05198	Translation initiation factor IF-3, N-terminal domain
CPS0C_RS03855	PF00707	Translation initiation factor IF-3, C-terminal domain
CPS0C_RS03860	PF01029	NusB family
CPS0C_RS03865	PF01565	FAD binding domain 
CPS0C_RS03865	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
CPS0C_RS03870	PF06962	Putative rRNA methylase
CPS0C_RS03880	PF00268	Ribonucleotide reductase, small chain
CPS0C_RS03885	PF00317	Ribonucleotide reductase, all-alpha domain
CPS0C_RS03885	PF02867	Ribonucleotide reductase, barrel domain
CPS0C_RS03885	PF03477	ATP cone domain
CPS0C_RS03890	PF01066	CDP-alcohol phosphatidyltransferase
CPS0C_RS03895	PF02646	RmuC family
CPS0C_RS03905	PF07687	Peptidase dimerisation domain
CPS0C_RS03905	PF01546	Peptidase family M20/M25/M40
CPS0C_RS03910	PF17820	PDZ domain
CPS0C_RS03910	PF13180	PDZ domain
CPS0C_RS03915	PF00549	CoA-ligase
CPS0C_RS03915	PF02629	CoA binding domain
CPS0C_RS03920	PF08442	ATP-grasp domain
CPS0C_RS03920	PF00549	CoA-ligase
CPS0C_RS03925	PF00448	SRP54-type protein, GTPase domain
CPS0C_RS03930	PF01027	Inhibitor of apoptosis-promoting Bax1
CPS0C_RS03935	PF03222	Tryptophan/tyrosine permease family
CPS0C_RS03940	PF01380	SIS domain
CPS0C_RS03945	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CPS0C_RS03945	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CPS0C_RS03945	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CPS0C_RS03945	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CPS0C_RS03950	PF12627	Probable RNA and SrmB- binding site of polymerase A
CPS0C_RS03950	PF12626	Polymerase A arginine-rich C-terminus
CPS0C_RS03950	PF01743	Poly A polymerase head domain
CPS0C_RS03955	PF07578	Lipid A Biosynthesis N-terminal domain
CPS0C_RS03955	PF02684	Lipid-A-disaccharide synthetase
CPS0C_RS04020	PF03797	Autotransporter beta-domain
CPS0C_RS04020	PF07548	Chlamydia polymorphic membrane protein middle domain
CPS0C_RS04025	PF02504	Fatty acid synthesis protein
CPS0C_RS04030	PF01783	Ribosomal L32p protein family
CPS0C_RS04040	PF00575	S1 RNA binding domain
CPS0C_RS04040	PF10150	Ribonuclease E/G family
CPS0C_RS04065	PF00288	GHMP kinases N terminal domain
CPS0C_RS04070	PF03948	Ribosomal protein L9, C-terminal domain
CPS0C_RS04070	PF01281	Ribosomal protein L9, N-terminal domain
CPS0C_RS04075	PF01084	Ribosomal protein S18
CPS0C_RS04080	PF01250	Ribosomal protein S6
CPS0C_RS04085	PF01195	Peptidyl-tRNA hydrolase
CPS0C_RS04090	PF14693	Ribosomal protein TL5, C-terminal domain
CPS0C_RS04090	PF01386	Ribosomal L25p family
CPS0C_RS04100	PF00534	Glycosyl transferases group 1
CPS0C_RS04100	PF08323	Starch synthase catalytic domain
CPS0C_RS04105	PF01066	CDP-alcohol phosphatidyltransferase
CPS0C_RS04115	PF02092	Glycyl-tRNA synthetase beta subunit
CPS0C_RS04115	PF02091	Glycyl-tRNA synthetase alpha subunit
CPS0C_RS04140	PF01807	CHC2 zinc finger
CPS0C_RS04140	PF08275	DNA primase catalytic core, N-terminal domain
CPS0C_RS04145	PF05188	MutS domain II
CPS0C_RS04145	PF00488	MutS domain V
CPS0C_RS04145	PF05190	MutS family domain IV
CPS0C_RS04145	PF01624	MutS domain I
CPS0C_RS04145	PF05192	MutS domain III
CPS0C_RS04150	PF08459	UvrC Helix-hairpin-helix N-terminal
CPS0C_RS04150	PF01541	GIY-YIG catalytic domain
CPS0C_RS04160	PF00253	Ribosomal protein S14p/S29e
CPS0C_RS04165	PF00444	Ribosomal protein L36
CPS0C_RS04170	PF00825	Ribonuclease P
CPS0C_RS04180	PF09190	DALR domain
CPS0C_RS04180	PF01406	tRNA synthetases class I (C) catalytic domain
CPS0C_RS04185	PF00152	tRNA synthetases class II (D, K and N) 
CPS0C_RS04185	PF01336	OB-fold nucleic acid binding domain
CPS0C_RS04200	PF04851	Type III restriction enzyme, res subunit
CPS0C_RS04200	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
CPS0C_RS04200	PF17764	3′ DNA-binding domain (3′BD)
CPS0C_RS04200	PF18074	Primosomal protein N C-terminal domain
CPS0C_RS04200	PF00271	Helicase conserved C-terminal domain
CPS0C_RS04205	PF00155	Aminotransferase class I and II
CPS0C_RS04210	PF01553	Acyltransferase
CPS0C_RS04210	PF00501	AMP-binding enzyme
CPS0C_RS04220	PF00459	Inositol monophosphatase family
CPS0C_RS04225	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CPS0C_RS04225	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CPS0C_RS04230	PF00719	Inorganic pyrophosphatase
CPS0C_RS04235	PF00293	NUDIX domain
CPS0C_RS04240	PF00109	Beta-ketoacyl synthase, N-terminal domain
CPS0C_RS04240	PF02801	Beta-ketoacyl synthase, C-terminal domain
CPS0C_RS04260	PF04055	Radical SAM superfamily
CPS0C_RS04290	PF01225	Mur ligase family, catalytic domain
CPS0C_RS04290	PF08245	Mur ligase middle domain
CPS0C_RS04290	PF07478	D-ala D-ala ligase C-terminus
CPS0C_RS04290	PF01820	D-ala D-ala ligase N-terminus
CPS0C_RS04290	PF02875	Mur ligase family, glutamate ligase domain
CPS0C_RS04295	PF04101	Glycosyltransferase family 28 C-terminal domain
CPS0C_RS04295	PF03033	Glycosyltransferase family 28 N-terminal domain
CPS0C_RS04300	PF01098	Cell cycle protein
CPS0C_RS04305	PF01476	LysM domain
CPS0C_RS04305	PF00877	NlpC/P60 family
CPS0C_RS04310	PF08245	Mur ligase middle domain
CPS0C_RS04310	PF02875	Mur ligase family, glutamate ligase domain
CPS0C_RS04315	PF00953	Glycosyl transferase family 4
CPS0C_RS04320	PF08245	Mur ligase middle domain
CPS0C_RS04320	PF02875	Mur ligase family, glutamate ligase domain
CPS0C_RS04320	PF01225	Mur ligase family, catalytic domain
CPS0C_RS04330	PF00118	TCP-1/cpn60 chaperonin family
CPS0C_RS04345	PF09285	Elongation factor P, C-terminal
CPS0C_RS04345	PF08207	Elongation factor P (EF-P) KOW-like domain
CPS0C_RS04345	PF01132	Elongation factor P (EF-P) OB domain
CPS0C_RS04355	PF00456	Transketolase, thiamine diphosphate binding domain
CPS0C_RS04355	PF02779	Transketolase, pyrimidine binding domain
CPS0C_RS04355	PF02780	Transketolase, C-terminal domain
CPS0C_RS04360	PF01411	tRNA synthetases class II (A)
CPS0C_RS04360	PF02272	DHHA1 domain
CPS0C_RS04360	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CPS0C_RS04365	PF03461	TRCF domain
CPS0C_RS04365	PF02559	CarD-like/TRCF domain
CPS0C_RS04365	PF00270	DEAD/DEAH box helicase
CPS0C_RS04365	PF00271	Helicase conserved C-terminal domain
CPS0C_RS04365	PF17757	UvrB interaction domain
CPS0C_RS04370	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CPS0C_RS04375	PF04055	Radical SAM superfamily
CPS0C_RS04375	PF06969	HemN C-terminal domain
CPS0C_RS04380	PF01593	Flavin containing amine oxidoreductase
CPS0C_RS04390	PF07432	Histone H1-like protein Hc1
CPS0C_RS04395	PF05958	tRNA (Uracil-5-)-methyltransferase
CPS0C_RS04400	PF02699	Preprotein translocase subunit
CPS0C_RS04405	PF00111	2Fe-2S iron-sulfur cluster binding domain
CPS0C_RS04405	PF00175	Oxidoreductase NAD-binding domain 
CPS0C_RS04435	PF09397	Ftsk gamma domain
CPS0C_RS04435	PF01580	FtsK/SpoIIIE family
CPS0C_RS04435	PF13491	4TM region of DNA translocase FtsK/SpoIIIE
CPS0C_RS04435	PF17854	FtsK alpha domain
CPS0C_RS04440	PF00753	Metallo-beta-lactamase superfamily
CPS0C_RS04450	PF01161	Phosphatidylethanolamine-binding protein
CPS0C_RS04455	PF01235	Sodium:alanine symporter family
CPS0C_RS04470	PF00885	6,7-dimethyl-8-ribityllumazine synthase
CPS0C_RS04475	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
CPS0C_RS04475	PF00925	GTP cyclohydrolase II
CPS0C_RS04480	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CPS0C_RS04480	PF01872	RibD C-terminal domain
CPS0C_RS04485	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CPS0C_RS04485	PF02403	Seryl-tRNA synthetase N-terminal domain
CPS0C_RS04495	PF00403	Heavy-metal-associated domain
CPS0C_RS04500	PF01098	Cell cycle protein
CPS0C_RS04505	PF03099	Biotin/lipoate A/B protein ligase family
CPS0C_RS04505	PF08279	HTH domain
CPS0C_RS04505	PF02237	Biotin protein ligase C terminal domain
CPS0C_RS04515	PF01479	S4 domain
CPS0C_RS04515	PF00849	RNA pseudouridylate synthase
CPS0C_RS04520	PF00300	Histidine phosphatase superfamily (branch 1)
CPS0C_RS04545	PF18269	T3SS EscN ATPase C-terminal domain
CPS0C_RS04545	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CPS0C_RS04545	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CPS0C_RS04560	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
CPS0C_RS04560	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
CPS0C_RS04580	PF17297	Phosphoenolpyruvate carboxykinase N-terminal domain
CPS0C_RS04580	PF00821	Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
CPS0C_RS04590	PF00176	SNF2 family N-terminal domain
CPS0C_RS04590	PF00271	Helicase conserved C-terminal domain
CPS0C_RS04590	PF04434	SWIM zinc finger
CPS0C_RS04600	PF05698	Bacterial trigger factor protein (TF) C-terminus
CPS0C_RS04600	PF05697	Bacterial trigger factor protein (TF)
CPS0C_RS04605	PF00574	Clp protease
CPS0C_RS04610	PF06689	ClpX C4-type zinc finger
CPS0C_RS04610	PF10431	C-terminal, D2-small domain, of ClpB protein 
CPS0C_RS04610	PF07724	AAA domain (Cdc48 subfamily)
CPS0C_RS04615	PF01743	Poly A polymerase head domain
CPS0C_RS04615	PF13735	tRNA nucleotidyltransferase domain 2 putative
CPS0C_RS04615	PF12627	Probable RNA and SrmB- binding site of polymerase A
CPS0C_RS04620	PF01926	50S ribosome-binding GTPase
CPS0C_RS04620	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
CPS0C_RS04630	PF07516	SecA Wing and Scaffold domain
CPS0C_RS04630	PF07517	SecA DEAD-like domain
CPS0C_RS04630	PF01043	SecA preprotein cross-linking domain
CPS0C_RS04640	PF02666	Phosphatidylserine decarboxylase
CPS0C_RS04645	PF01926	50S ribosome-binding GTPase
CPS0C_RS04645	PF12631	MnmE helical domain
CPS0C_RS04645	PF10396	GTP-binding protein TrmE N-terminus
CPS0C_RS04650	PF00730	HhH-GPD superfamily base excision DNA repair protein
CPS0C_RS04650	PF00633	Helix-hairpin-helix motif
CPS0C_RS04650	PF10576	Iron-sulfur binding domain of endonuclease III
CPS0C_RS04655	PF05525	Branched-chain amino acid transport protein
CPS0C_RS04660	PF00271	Helicase conserved C-terminal domain
CPS0C_RS04660	PF12419	SNF2 Helicase protein 
CPS0C_RS04660	PF00176	SNF2 family N-terminal domain
CPS0C_RS04670	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CPS0C_RS04670	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CPS0C_RS04675	PF04055	Radical SAM superfamily
CPS0C_RS04680	PF01514	Secretory protein of YscJ/FliF family
CPS0C_RS04690	PF02108	Flagellar assembly protein FliH
CPS0C_RS04695	PF00813	FliP family
CPS0C_RS04700	PF01313	Bacterial export proteins, family 3
CPS0C_RS04705	PF01311	Bacterial export proteins, family 1
CPS0C_RS04730	PF07963	Prokaryotic N-terminal methylation motif
CPS0C_RS04735	PF00482	Type II secretion system (T2SS), protein F
CPS0C_RS04740	PF00437	Type II/IV secretion system protein
CPS0C_RS04745	PF07660	Secretin and TonB N terminus short domain
CPS0C_RS04745	PF11741	AMIN domain
CPS0C_RS04745	PF00263	Bacterial type II and III secretion system protein
CPS0C_RS04745	PF03958	Bacterial type II/III secretion system short domain
CPS0C_RS04760	PF00557	Metallopeptidase family M24
CPS0C_RS04760	PF01321	Creatinase/Prolidase N-terminal domain
CPS0C_RS04765	PF08676	MutL C terminal dimerisation domain
CPS0C_RS04765	PF01119	DNA mismatch repair protein, C-terminal domain
CPS0C_RS04785	PF04888	Secretion system effector C (SseC) like family 
CPS0C_RS04790	PF00892	EamA-like transporter family
CPS0C_RS04795	PF03129	Anticodon binding domain
CPS0C_RS04795	PF02824	TGS domain
CPS0C_RS04795	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CPS0C_RS04795	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CPS0C_RS04800	PF13614	AAA domain
CPS0C_RS04805	PF03677	Uncharacterised protein family (UPF0137)
CPS0C_RS04810	PF17435	Family of unknown function (DUF5414)
CPS0C_RS04815	PF00579	tRNA synthetases class I (W and Y)
CPS0C_RS04820	PF04851	Type III restriction enzyme, res subunit
CPS0C_RS04820	PF17757	UvrB interaction domain
CPS0C_RS04820	PF12344	Ultra-violet resistance protein B
CPS0C_RS04820	PF02151	UvrB/uvrC motif
CPS0C_RS04820	PF00271	Helicase conserved C-terminal domain
CPS0C_RS04825	PF00113	Enolase, C-terminal TIM barrel domain
CPS0C_RS04825	PF03952	Enolase, N-terminal domain
CPS0C_RS04850	PF13183	4Fe-4S dicluster domain
CPS0C_RS04850	PF13085	2Fe-2S iron-sulfur cluster binding domain
CPS0C_RS04855	PF02910	Fumarate reductase flavoprotein C-term
CPS0C_RS04855	PF00890	FAD binding domain
CPS0C_RS04865	PF01026	TatD related DNase
CPS0C_RS04875	PF01618	MotA/TolQ/ExbB proton channel family
CPS0C_RS04880	PF02472	Biopolymer transport protein ExbD/TolR
CPS0C_RS04890	PF07676	WD40-like Beta Propeller Repeat
CPS0C_RS04895	PF00691	OmpA family
CPS0C_RS04910	PF10417	C-terminal domain of 1-Cys peroxiredoxin
CPS0C_RS04910	PF00578	AhpC/TSA family
CPS0C_RS04920	PF00118	TCP-1/cpn60 chaperonin family
CPS0C_RS04925	PF07075	Protein of unknown function (DUF1343)
CPS0C_RS04930	PF01725	Ham1 family
CPS0C_RS04940	PF03167	Uracil DNA glycosylase superfamily
CPS0C_RS04945	PF13361	UvrD-like helicase C-terminal domain
CPS0C_RS04945	PF00580	UvrD/REP helicase N-terminal domain
CPS0C_RS04950	PF04552	Sigma-54, DNA binding domain
CPS0C_RS04950	PF04963	Sigma-54 factor, core binding domain
CPS0C_RS04950	PF00309	Sigma-54 factor, Activator interacting domain (AID) 
CPS0C_RS04960	PF01131	DNA topoisomerase
CPS0C_RS04960	PF01751	Toprim domain
CPS0C_RS04960	PF01396	Topoisomerase DNA binding C4 zinc finger
CPS0C_RS04965	PF01207	Dihydrouridine synthase (Dus)
CPS0C_RS04970	PF02325	YGGT family
CPS0C_RS04990	PF01812	5-formyltetrahydrofolate cyclo-ligase family
CPS0C_RS04995	PF00154	recA bacterial DNA recombination protein
CPS0C_RS05000	PF03070	TENA/THI-4/PQQC family
CPS0C_RS05010	PF00186	Dihydrofolate reductase
CPS0C_RS05015	PF00809	Pterin binding enzyme
CPS0C_RS05015	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CPS0C_RS05020	PF02152	Dihydroneopterin aldolase
CPS0C_RS05025	PF03979	Sigma-70 factor, region 1.1
CPS0C_RS05025	PF00140	Sigma-70 factor, region 1.2
CPS0C_RS05025	PF04542	Sigma-70 region 2 
CPS0C_RS05025	PF04539	Sigma-70 region 3
CPS0C_RS05025	PF04545	Sigma-70, region 4
CPS0C_RS05030	PF06785	Uncharacterised protein family (UPF0242) N-terminus
CPS0C_RS05030	PF18095	UPF0242 C-terminal PAS-like domain
CPS0C_RS05035	PF01649	Ribosomal protein S20
CPS0C_RS05045	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
CPS0C_RS05045	PF13538	UvrD-like helicase C-terminal domain
CPS0C_RS05045	PF14490	Helix-hairpin-helix containing domain
CPS0C_RS05055	PF00486	Transcriptional regulatory protein, C terminal
CPS0C_RS05060	PF12804	MobA-like NTP transferase domain
CPS0C_RS05060	PF00132	Bacterial transferase hexapeptide (six repeats)
CPS0C_RS05060	PF14602	Hexapeptide repeat of succinyl-transferase
CPS0C_RS05065	PF00348	Polyprenyl synthetase
CPS0C_RS05080	PF02511	Thymidylate synthase complementing protein
