KW39_RS00025	SM00845	GatB domain
KW39_RS00080	SM00670	Large family of predicted nucleotide-binding domains
KW39_RS00090	SM00287	Bacterial SH3 domain homologues
KW39_RS00120	SM00937	KW39_RS00120
KW39_RS00130	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00130	SM00962	SRP54-type protein, GTPase domain
KW39_RS00130	SM00963	SRP54-type protein, helical bundle domain
KW39_RS00155	SM00072	Guanylate kinase homologues.
KW39_RS00170	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00215	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00225	SM00642	Alpha-amylase domain
KW39_RS00275	SM00729	Elongator protein 3, MiaB family, Radical SAM
KW39_RS00285	SM00861	Transketolase, pyrimidine binding domain
KW39_RS00305	SM00506	Appr-1"-p processing enzyme
KW39_RS00330	SM00363	S4 RNA-binding domain
KW39_RS00335	SM01350	KW39_RS00335
KW39_RS00360	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00365	SM00529	Helix-turn-helix diphteria tox regulatory element
KW39_RS00395	SM00480	DNA polymerase III beta subunit
KW39_RS00440	SM00155	Phospholipase D. Active site motifs.
KW39_RS00485	SM00904	Riboflavin kinase
KW39_RS00505	SM00316	Ribosomal protein S1-like RNA-binding domain
KW39_RS00505	SM00322	K homology RNA-binding domain
KW39_RS00510	SM00316	Ribosomal protein S1-like RNA-binding domain
KW39_RS00550	SM00363	S4 RNA-binding domain
KW39_RS00555	SM00478	endonuclease III
KW39_RS00555	SM00525	KW39_RS00555
KW39_RS00575	SM00883	Chaperonin 10 Kd subunit
KW39_RS00585	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00585	SM01086	C-terminal, D2-small domain, of ClpB protein
KW39_RS00630	SM00841	Elongation factor P, C-terminal
KW39_RS00630	SM01185	KW39_RS00630
KW39_RS00640	SM00878	Biotin carboxylase C-terminal domain
KW39_RS00670	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00755	SM00220	Serine/Threonine protein kinases, catalytic domain
KW39_RS00760	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KW39_RS00760	SM00292	breast cancer carboxy-terminal domain
KW39_RS00760	SM00532	Ligase N family
KW39_RS00790	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00795	SM00457	membrane-attack complex / perforin
KW39_RS00795	SM00472	Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
KW39_RS00800	SM00155	Phospholipase D. Active site motifs.
KW39_RS00815	SM00155	Phospholipase D. Active site motifs.
KW39_RS00940	SM00382	ATPases associated with a variety of cellular activities
KW39_RS00970	SM00732	Likely ribonuclease with RNase H fold.
KW39_RS00995	SM00434	DNA Topoisomerase IV
KW39_RS01000	SM00387	Histidine kinase-like ATPases
KW39_RS01000	SM00433	TopoisomeraseII
KW39_RS01020	SM00116	Domain in cystathionine beta-synthase and other proteins.
KW39_RS01020	SM00924	MgtE intracellular N domain
KW39_RS01055	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01060	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01135	SM01133	KW39_RS01135
KW39_RS01250	SM00100	Cyclic nucleotide-monophosphate binding domain
KW39_RS01260	SM00822	KW39_RS01260
KW39_RS01265	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
KW39_RS01275	SM00493	KW39_RS01275
KW39_RS01285	SM00935	Outer membrane protein (OmpH-like)
KW39_RS01305	SM00861	Transketolase, pyrimidine binding domain
KW39_RS01325	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01325	SM00760	Bacterial dnaA protein helix-turn-helix domain
KW39_RS01355	SM01091	Transporter associated domain
KW39_RS01360	SM01091	Transporter associated domain
KW39_RS01370	SM00331	Sigma factor PP2C-like phosphatases
KW39_RS01370	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
KW39_RS01380	SM00479	KW39_RS01380
KW39_RS01395	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01410	SM00411	bacterial (prokaryotic) histone like domain
KW39_RS01415	SM00646	KW39_RS01415
KW39_RS01450	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01450	SM00760	Bacterial dnaA protein helix-turn-helix domain
KW39_RS01470	SM00900	KW39_RS01470
KW39_RS01495	SM00155	Phospholipase D. Active site motifs.
KW39_RS01505	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01505	SM01086	C-terminal, D2-small domain, of ClpB protein
KW39_RS01560	SM00358	Double-stranded RNA binding motif
KW39_RS01560	SM00535	Ribonuclease III family
KW39_RS01565	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01580	SM00220	Serine/Threonine protein kinases, catalytic domain
KW39_RS01645	SM00663	RNA polymerase I subunit A N-terminus
KW39_RS01670	SM00649	Ribosomal protein L11/L12
KW39_RS01675	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
KW39_RS01675	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
KW39_RS01700	SM00316	Ribosomal protein S1-like RNA-binding domain
KW39_RS01770	SM00861	Transketolase, pyrimidine binding domain
KW39_RS01785	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01820	SM00861	Transketolase, pyrimidine binding domain
KW39_RS01825	SM00271	DnaJ molecular chaperone homology domain
KW39_RS01840	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01840	SM00464	Found in ATP-dependent protease La (LON)
KW39_RS01860	SM00382	ATPases associated with a variety of cellular activities
KW39_RS01890	SM00650	Ribosomal RNA adenine dimethylases
KW39_RS01935	SM01130	KW39_RS01935
KW39_RS01945	SM00859	Semialdehyde dehydrogenase, NAD binding domain
KW39_RS02030	SM00849	Metallo-beta-lactamase superfamily
KW39_RS02035	SM00062	Bacterial periplasmic substrate-binding proteins
KW39_RS02075	SM01152	KW39_RS02075
KW39_RS02120	SM00357	Cold shock protein domain
KW39_RS02120	SM00955	KW39_RS02120
KW39_RS02150	SM00967	RNA 2'-O ribose methyltransferase substrate binding
KW39_RS02190	SM01259	KW39_RS02190
KW39_RS02200	SM00710	Parallel beta-helix repeats
KW39_RS02200	SM00869	Autotransporter beta-domain
KW39_RS02205	SM00869	Autotransporter beta-domain
KW39_RS02220	SM00382	ATPases associated with a variety of cellular activities
KW39_RS02270	SM01091	Transporter associated domain
KW39_RS02335	SM01403	KW39_RS02335
KW39_RS02340	SM00838	Elongation factor G C-terminus
KW39_RS02340	SM00889	Elongation factor G, domain IV
KW39_RS02360	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
KW39_RS02360	SM00245	tail specific protease
KW39_RS02430	SM00563	Phosphate acyltransferases
KW39_RS02435	SM00836	DALR anticodon binding domain
KW39_RS02435	SM01016	Arginyl tRNA synthetase N terminal dom
KW39_RS02460	SM00937	KW39_RS02460
KW39_RS02465	SM00151	SWI complex, BAF60b domains
KW39_RS02505	SM00091	PAS domain
KW39_RS02505	SM00387	Histidine kinase-like ATPases
KW39_RS02505	SM00388	His Kinase A (phosphoacceptor) domain
KW39_RS02510	SM00382	ATPases associated with a variety of cellular activities
KW39_RS02510	SM00448	cheY-homologous receiver domain
KW39_RS02560	SM00873	B3/4 domain
KW39_RS02560	SM00874	tRNA synthetase B5 domain
KW39_RS02560	SM00896	Ferredoxin-fold anticodon binding domain
KW39_RS02620	SM00062	Bacterial periplasmic substrate-binding proteins
KW39_RS02645	SM00357	Cold shock protein domain
KW39_RS02645	SM00382	ATPases associated with a variety of cellular activities
KW39_RS02645	SM00959	Rho termination factor, N-terminal domain
KW39_RS02655	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
KW39_RS02655	SM00474	3'-5' exonuclease
KW39_RS02655	SM00475	5'-3' exonuclease
KW39_RS02655	SM00482	DNA polymerase A domain
KW39_RS02690	SM01228	KW39_RS02690
KW39_RS02700	SM00562	KW39_RS02700
KW39_RS02705	SM00278	Helix-hairpin-helix DNA-binding motif class 1
KW39_RS02730	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
KW39_RS02740	SM00662	RNA polymerases D
KW39_RS02790	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
KW39_RS02795	SM01374	KW39_RS02795
KW39_RS02815	SM00322	K homology RNA-binding domain
KW39_RS02830	SM01382	KW39_RS02830
KW39_RS02830	SM01383	KW39_RS02830
KW39_RS02885	SM00479	KW39_RS02885
KW39_RS02940	SM00481	DNA polymerase alpha chain like domain
KW39_RS02950	SM00028	Tetratricopeptide repeats
KW39_RS02995	SM00487	DEAD-like helicases superfamily
KW39_RS02995	SM00490	helicase superfamily c-terminal domain
KW39_RS03010	SM00729	Elongator protein 3, MiaB family, Radical SAM
KW39_RS03100	SM00853	MutL C terminal dimerisation domain
KW39_RS03100	SM01340	KW39_RS03100
KW39_RS03135	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
KW39_RS03160	SM00487	DEAD-like helicases superfamily
KW39_RS03160	SM00490	helicase superfamily c-terminal domain
KW39_RS03165	SM01192	KW39_RS03165
KW39_RS03165	SM01193	KW39_RS03165
KW39_RS03170	SM00331	Sigma factor PP2C-like phosphatases
KW39_RS03175	SM00331	Sigma factor PP2C-like phosphatases
KW39_RS03240	SM00257	Lysin motif
KW39_RS03280	SM00986	Uracil DNA glycosylase superfamily
KW39_RS03280	SM00987	UreE urease accessory protein, C-terminal domain 
KW39_RS03295	SM01236	KW39_RS03295
KW39_RS03315	SM00905	Dihydroneopterin aldolase
KW39_RS03375	SM00518	AP endonuclease family 2
KW39_RS03380	SM00363	S4 RNA-binding domain
KW39_RS03380	SM01390	KW39_RS03380
KW39_RS03385	SM00450	Rhodanese Homology Domain
KW39_RS03400	SM00862	Transcriptional regulatory protein, C terminal
KW39_RS03420	SM01004	Delta-aminolevulinic acid dehydratase
KW39_RS03475	SM00151	SWI complex, BAF60b domains
KW39_RS03475	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
KW39_RS03475	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
KW39_RS03475	SM00493	KW39_RS03475
KW39_RS03510	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03530	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03560	SM00363	S4 RNA-binding domain
KW39_RS03570	SM00434	DNA Topoisomerase IV
KW39_RS03575	SM00387	Histidine kinase-like ATPases
KW39_RS03575	SM00433	TopoisomeraseII
KW39_RS03590	SM00240	Forkhead associated domain
KW39_RS03615	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03635	SM00220	Serine/Threonine protein kinases, catalytic domain
KW39_RS03705	SM00028	Tetratricopeptide repeats
KW39_RS03715	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03730	SM00470	ParB-like nuclease domain
KW39_RS03735	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03740	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03775	SM00478	endonuclease III
KW39_RS03790	SM00028	Tetratricopeptide repeats
KW39_RS03795	SM00957	SecA DEAD-like domain
KW39_RS03795	SM00958	SecA preprotein cross-linking domain
KW39_RS03815	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03815	SM00994	ClpX C4-type zinc finger
KW39_RS03815	SM01086	C-terminal, D2-small domain, of ClpB protein
KW39_RS03840	SM00487	DEAD-like helicases superfamily
KW39_RS03840	SM00490	helicase superfamily c-terminal domain
KW39_RS03910	SM00855	Phosphoglycerate mutase family
KW39_RS03915	SM00363	S4 RNA-binding domain
KW39_RS03985	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
KW39_RS03990	SM00849	Metallo-beta-lactamase superfamily
KW39_RS03995	SM00382	ATPases associated with a variety of cellular activities
KW39_RS03995	SM00843	KW39_RS03995
KW39_RS04030	SM01323	KW39_RS04030
KW39_RS04055	SM00729	Elongator protein 3, MiaB family, Radical SAM
KW39_RS04065	SM00487	DEAD-like helicases superfamily
KW39_RS04065	SM00490	helicase superfamily c-terminal domain
KW39_RS04065	SM00982	KW39_RS04065
KW39_RS04065	SM01058	CarD-like/TRCF domain
KW39_RS04070	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
KW39_RS04095	SM00861	Transketolase, pyrimidine binding domain
KW39_RS04105	SM00841	Elongation factor P, C-terminal
KW39_RS04105	SM01185	KW39_RS04105
KW39_RS04145	SM00257	Lysin motif
KW39_RS04200	SM00825	Beta-ketoacyl synthase
KW39_RS04220	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
KW39_RS04230	SM00563	Phosphate acyltransferases
KW39_RS04245	SM00487	DEAD-like helicases superfamily
KW39_RS04245	SM00490	helicase superfamily c-terminal domain
KW39_RS04265	SM00840	KW39_RS04265
KW39_RS04310	SM00465	GIY-YIG type nucleases (URI domain)
KW39_RS04315	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
KW39_RS04315	SM00534	ATPase domain of DNA mismatch repair MUTS family
KW39_RS04325	SM00400	zinc finger
KW39_RS04325	SM00493	KW39_RS04325
KW39_RS04410	SM00316	Ribosomal protein S1-like RNA-binding domain
KW39_RS04435	SM00869	Autotransporter beta-domain
KW39_RS04480	SM00382	ATPases associated with a variety of cellular activities
KW39_RS04480	SM00962	SRP54-type protein, GTPase domain
KW39_RS04490	SM00881	CoA binding domain
KW39_RS04495	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
KW39_RS04500	SM01264	KW39_RS04500
KW39_RS04590	SM00382	ATPases associated with a variety of cellular activities
KW39_RS04595	SM00316	Ribosomal protein S1-like RNA-binding domain
KW39_RS04595	SM00322	K homology RNA-binding domain
KW39_RS04600	SM01387	KW39_RS04600
KW39_RS04690	SM00245	tail specific protease
KW39_RS04740	SM00642	Alpha-amylase domain
KW39_RS04760	SM00869	Autotransporter beta-domain
KW39_RS04765	SM00869	Autotransporter beta-domain
KW39_RS04770	SM00869	Autotransporter beta-domain
KW39_RS04780	SM00869	Autotransporter beta-domain
