locus-tag	class	description
A7249_RS00015	PF02686	Glu-tRNAGln amidotransferase C subunit
A7249_RS00020	PF01425	Amidase
A7249_RS00025	PF02934	GatB/GatE catalytic domain
A7249_RS00025	PF02637	GatB domain
A7249_RS00030	PF17461	Family of unknown function (DUF5423)
A7249_RS00035	PF17459	Family of unknown function (DUF5422)
A7249_RS00045	PF11858	Domain of unknown function (DUF3378)
A7249_RS00045	PF01351	Ribonuclease HII
A7249_RS00055	PF03279	Bacterial lipid A biosynthesis acyltransferase
A7249_RS00065	PF02457	DisA bacterial checkpoint controller nucleotide-binding
A7249_RS00070	PF01654	Cytochrome bd terminal oxidase subunit I
A7249_RS00075	PF02322	Cytochrome bd terminal oxidase subunit II
A7249_RS00080	PF13638	PIN domain
A7249_RS00080	PF02562	PhoH-like protein
A7249_RS00100	PF08264	Anticodon-binding domain of tRNA
A7249_RS00100	PF00133	tRNA synthetases class I (I, L, M and V)
A7249_RS00105	PF10502	Signal peptidase, peptidase S26 
A7249_RS00115	PF01197	Ribosomal protein L31
A7249_RS00120	PF03462	PCRF domain
A7249_RS00120	PF00472	RF-1 domain
A7249_RS00125	PF17827	PrmC N-terminal domain
A7249_RS00125	PF05175	Methyltransferase small domain
A7249_RS00130	PF02881	SRP54-type protein, helical bundle domain
A7249_RS00130	PF00448	SRP54-type protein, GTPase domain
A7249_RS00130	PF02978	Signal peptide binding domain
A7249_RS00135	PF00886	Ribosomal protein S16
A7249_RS00140	PF01746	tRNA (Guanine-1)-methyltransferase
A7249_RS00145	PF01245	Ribosomal protein L19
A7249_RS00150	PF01351	Ribonuclease HII
A7249_RS00155	PF00625	Guanylate kinase
A7249_RS00165	PF09334	tRNA synthetases class I (M)
A7249_RS00165	PF08264	Anticodon-binding domain of tRNA
A7249_RS00170	PF13538	UvrD-like helicase C-terminal domain
A7249_RS00170	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
A7249_RS00170	PF14490	Helix-hairpin-helix containing domain
A7249_RS00180	PF09825	Biotin-protein ligase, N terminal
A7249_RS00205	PF00692	dUTPase
A7249_RS00215	PF05491	RuvB C-terminal winged helix domain
A7249_RS00215	PF05496	Holliday junction DNA helicase RuvB P-loop domain
A7249_RS00215	PF17864	RuvB AAA lid domain
A7249_RS00220	PF08486	Stage II sporulation protein
A7249_RS00225	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
A7249_RS00225	PF00128	Alpha amylase, catalytic domain
A7249_RS00235	PF00436	Single-strand binding protein family
A7249_RS00240	PF00883	Cytosol aminopeptidase family, catalytic domain
A7249_RS00240	PF02789	Cytosol aminopeptidase family, N-terminal domain
A7249_RS00245	PF07382	Histone H1-like nucleoprotein HC2
A7249_RS00255	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
A7249_RS00275	PF06969	HemN C-terminal domain
A7249_RS00275	PF04055	Radical SAM superfamily
A7249_RS00285	PF02779	Transketolase, pyrimidine binding domain
A7249_RS00285	PF16870	2-oxoglutarate dehydrogenase C-terminal
A7249_RS00285	PF00676	Dehydrogenase E1 component
A7249_RS00285	PF16078	2-oxoglutarate dehydrogenase N-terminus
A7249_RS00285	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A7249_RS00290	PF02817	e3 binding domain
A7249_RS00290	PF00364	Biotin-requiring enzyme
A7249_RS00290	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A7249_RS00300	PF04551	GcpE protein
A7249_RS00310	PF00111	2Fe-2S iron-sulfur cluster binding domain
A7249_RS00320	PF00771	FHIPEP family
A7249_RS00325	PF04542	Sigma-70 region 2 
A7249_RS00325	PF04539	Sigma-70 region 3
A7249_RS00325	PF04545	Sigma-70, region 4
A7249_RS00330	PF01479	S4 domain
A7249_RS00330	PF00579	tRNA synthetases class I (W and Y)
A7249_RS00335	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
A7249_RS00335	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
A7249_RS00340	PF00679	Elongation factor G C-terminus
A7249_RS00340	PF00009	Elongation factor Tu GTP binding domain
A7249_RS00340	PF03144	Elongation factor Tu domain 2
A7249_RS00340	PF06421	GTP-binding protein LepA C-terminus
A7249_RS00345	PF03219	TLC ATP/ADP transporter
A7249_RS00355	PF01297	Zinc-uptake complex component A periplasmic
A7249_RS00360	PF00005	ABC transporter
A7249_RS00365	PF02742	Iron dependent repressor, metal binding and dimerisation domain
A7249_RS00365	PF00950	ABC 3 transport family
A7249_RS00370	PF00950	ABC 3 transport family
A7249_RS00375	PF13288	DXP reductoisomerase C-terminal domain
A7249_RS00375	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
A7249_RS00375	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
A7249_RS00380	PF02163	Peptidase family M50
A7249_RS00390	PF02463	RecF/RecN/SMC N terminal domain
A7249_RS00395	PF02768	DNA polymerase III beta subunit, C-terminal domain
A7249_RS00395	PF00712	DNA polymerase III beta subunit, N-terminal domain
A7249_RS00395	PF02767	DNA polymerase III beta subunit, central domain
A7249_RS00400	PF01668	SmpB protein
A7249_RS00405	PF02424	ApbE family
A7249_RS00410	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
A7249_RS00410	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
A7249_RS00420	PF17455	Late transcription unit B
A7249_RS00445	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
A7249_RS00450	PF00830	Ribosomal L28 family
A7249_RS00455	PF02446	4-alpha-glucanotransferase
A7249_RS00470	PF00771	FHIPEP family
A7249_RS00475	PF01312	FlhB HrpN YscU SpaS Family
A7249_RS00480	PF06071	Protein of unknown function (DUF933)
A7249_RS00480	PF01926	50S ribosome-binding GTPase
A7249_RS00485	PF06574	FAD synthetase
A7249_RS00485	PF01687	Riboflavin kinase
A7249_RS00490	PF01509	TruB family pseudouridylate synthase (N terminal domain)
A7249_RS00490	PF16198	tRNA pseudouridylate synthase B C-terminal domain
A7249_RS00495	PF02033	Ribosome-binding factor A
A7249_RS00500	PF04760	Translation initiation factor IF-2, N-terminal region
A7249_RS00500	PF11987	Translation-initiation factor 2
A7249_RS00500	PF00009	Elongation factor Tu GTP binding domain
A7249_RS00505	PF00575	S1 RNA binding domain
A7249_RS00505	PF13184	NusA-like KH domain
A7249_RS00505	PF08529	NusA N-terminal domain
A7249_RS00510	PF00575	S1 RNA binding domain
A7249_RS00515	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A7249_RS00520	PF01648	4'-phosphopantetheinyl transferase superfamily
A7249_RS00555	PF00849	RNA pseudouridylate synthase
A7249_RS00560	PF00730	HhH-GPD superfamily base excision DNA repair protein
A7249_RS00560	PF00633	Helix-hairpin-helix motif
A7249_RS00560	PF14815	NUDIX domain
A7249_RS00565	PF01784	NIF3 (NGG1p interacting factor 3)
A7249_RS00575	PF00118	TCP-1/cpn60 chaperonin family
A7249_RS00580	PF00166	Chaperonin 10 Kd subunit
A7249_RS00585	PF01432	Peptidase family M3
A7249_RS00585	PF08439	Oligopeptidase F
A7249_RS00590	PF17871	AAA lid domain
A7249_RS00590	PF07724	AAA domain (Cdc48 subfamily)
A7249_RS00590	PF00004	ATPase family associated with various cellular activities (AAA)
A7249_RS00590	PF10431	C-terminal, D2-small domain, of ClpB protein 
A7249_RS00590	PF02861	Clp amino terminal domain, pathogenicity island component
A7249_RS00600	PF17628	Inclusion membrane protein D
A7249_RS00605	PF17627	Inclusion membrane protein E
A7249_RS00610	PF17626	Inclusion membrane protein F
A7249_RS00630	PF00834	Ribulose-phosphate 3 epimerase family
A7249_RS00635	PF09285	Elongation factor P, C-terminal
A7249_RS00635	PF08207	Elongation factor P (EF-P) KOW-like domain
A7249_RS00635	PF01132	Elongation factor P (EF-P) OB domain
A7249_RS00640	PF00364	Biotin-requiring enzyme
A7249_RS00645	PF02785	Biotin carboxylase C-terminal domain
A7249_RS00645	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A7249_RS00645	PF00289	Biotin carboxylase, N-terminal domain
A7249_RS00650	PF00572	Ribosomal protein L13
A7249_RS00655	PF00380	Ribosomal protein S9/S16
A7249_RS00670	PF00528	Binding-protein-dependent transport system inner membrane component
A7249_RS00675	PF00005	ABC transporter
A7249_RS00710	PF01300	Telomere recombination
A7249_RS00720	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A7249_RS00730	PF02810	SEC-C motif
A7249_RS00730	PF03695	Uncharacterised protein family (UPF0149)
A7249_RS00760	PF03781	Sulfatase-modifying factor enzyme 1
A7249_RS00760	PF00069	Protein kinase domain
A7249_RS00765	PF00533	BRCA1 C Terminus (BRCT) domain
A7249_RS00765	PF01653	NAD-dependent DNA ligase adenylation domain
A7249_RS00765	PF03120	NAD-dependent DNA ligase OB-fold domain
A7249_RS00765	PF12826	Helix-hairpin-helix motif
A7249_RS00775	PF01494	FAD binding domain
A7249_RS00785	PF00471	Ribosomal protein L33
A7249_RS00795	PF00005	ABC transporter
A7249_RS00895	PF01371	Trp repressor protein
A7249_RS00905	PF00291	Pyridoxal-phosphate dependent enzyme
A7249_RS00935	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A7249_RS00940	PF02600	Disulfide bond formation protein DsbB
A7249_RS00960	PF00005	ABC transporter
A7249_RS00980	PF02348	Cytidylyltransferase
A7249_RS00985	PF00117	Glutamine amidotransferase class-I
A7249_RS00985	PF06418	CTP synthase N-terminus
A7249_RS00990	PF03652	Holliday junction resolvase
A7249_RS00995	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
A7249_RS00995	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
A7249_RS01000	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
A7249_RS01005	PF12169	DNA polymerase III subunits gamma and tau domain III
A7249_RS01010	PF02223	Thymidylate kinase
A7249_RS01015	PF03989	DNA gyrase C-terminal domain, beta-propeller
A7249_RS01015	PF00521	DNA gyrase/topoisomerase IV, subunit A
A7249_RS01020	PF00204	DNA gyrase B
A7249_RS01020	PF00986	DNA gyrase B subunit, carboxyl terminus
A7249_RS01020	PF01751	Toprim domain
A7249_RS01020	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A7249_RS01035	PF01702	Queuine tRNA-ribosyltransferase
A7249_RS01040	PF03448	MgtE intracellular N domain
A7249_RS01040	PF01769	Divalent cation transporter
A7249_RS01040	PF00571	CBS domain
A7249_RS01055	PF00814	Glycoprotease family
A7249_RS01060	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A7249_RS01065	PF00528	Binding-protein-dependent transport system inner membrane component
A7249_RS01070	PF00528	Binding-protein-dependent transport system inner membrane component
A7249_RS01070	PF12911	N-terminal TM domain of oligopeptide transport permease C
A7249_RS01075	PF00005	ABC transporter
A7249_RS01075	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A7249_RS01080	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A7249_RS01080	PF00005	ABC transporter
A7249_RS01085	PF06685	Protein of unknown function (DUF1186)
A7249_RS01090	PF00939	Sodium:sulfate symporter transmembrane region
A7249_RS01095	PF00365	Phosphofructokinase
A7249_RS01105	PF00365	Phosphofructokinase
A7249_RS01120	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
A7249_RS01125	PF13603	Leucyl-tRNA synthetase, Domain 2
A7249_RS01125	PF08264	Anticodon-binding domain of tRNA
A7249_RS01125	PF09334	tRNA synthetases class I (M)
A7249_RS01130	PF00202	Aminotransferase class-III
A7249_RS01135	PF02622	Uncharacterized ACR, COG1678
A7249_RS01145	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
A7249_RS01155	PF01791	DeoC/LacD family aldolase
A7249_RS01160	PF13520	Amino acid permease
A7249_RS01165	PF01171	PP-loop family
A7249_RS01170	PF01975	Survival protein SurE
A7249_RS01175	PF01040	UbiA prenyltransferase family
A7249_RS01180	PF02441	Flavoprotein
A7249_RS01185	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
A7249_RS01185	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
A7249_RS01245	PF00375	Sodium:dicarboxylate symporter family
A7249_RS01250	PF00209	Sodium:neurotransmitter symporter family
A7249_RS01275	PF00550	Phosphopantetheine attachment site
A7249_RS01285	PF00698	Acyl transferase domain
A7249_RS01290	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
A7249_RS01290	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
A7249_RS01295	PF13662	Toprim domain
A7249_RS01300	PF07244	Surface antigen variable number repeat
A7249_RS01300	PF01103	Surface antigen
A7249_RS01305	PF03938	Outer membrane protein (OmpH-like)
A7249_RS01310	PF14602	Hexapeptide repeat of succinyl-transferase
A7249_RS01310	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD  
A7249_RS01310	PF00132	Bacterial transferase hexapeptide (six repeats)
A7249_RS01320	PF00676	Dehydrogenase E1 component
A7249_RS01325	PF02779	Transketolase, pyrimidine binding domain
A7249_RS01325	PF02780	Transketolase, C-terminal domain
A7249_RS01325	PF00364	Biotin-requiring enzyme
A7249_RS01330	PF00364	Biotin-requiring enzyme
A7249_RS01330	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A7249_RS01330	PF02817	e3 binding domain
A7249_RS01335	PF00343	Carbohydrate phosphorylase
A7249_RS01345	PF00308	Bacterial dnaA  protein
A7249_RS01345	PF08299	Bacterial dnaA protein helix-turn-helix
A7249_RS01350	PF02096	60Kd inner membrane protein
A7249_RS01355	PF01790	Prolipoprotein diacylglyceryl transferase
A7249_RS01365	PF02517	CPBP intramembrane metalloprotease
A7249_RS01375	PF00571	CBS domain
A7249_RS01375	PF03471	Transporter associated domain
A7249_RS01375	PF01595	Cyclin M transmembrane N-terminal domain
A7249_RS01385	PF00266	Aminotransferase class-V
A7249_RS01400	PF14579	Helix-hairpin-helix motif
A7249_RS01400	PF02811	PHP domain
A7249_RS01400	PF07733	Bacterial DNA polymerase III alpha NTPase domain
A7249_RS01400	PF11490	DNA polymerase III polC-type N-terminus II
A7249_RS01400	PF00929	Exonuclease
A7249_RS01400	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
A7249_RS01405	PF02621	Menaquinone biosynthesis
A7249_RS01415	PF00005	ABC transporter
A7249_RS01415	PF00664	ABC transporter transmembrane region
A7249_RS01420	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
A7249_RS01430	PF00216	Bacterial DNA-binding protein
A7249_RS01435	PF08239	Bacterial SH3 domain
A7249_RS01435	PF01520	N-acetylmuramoyl-L-alanine amidase
A7249_RS01440	PF08245	Mur ligase middle domain
A7249_RS01440	PF02875	Mur ligase family, glutamate ligase domain
A7249_RS01445	PF03717	Penicillin-binding Protein dimerisation domain
A7249_RS01445	PF00905	Penicillin binding protein transpeptidase domain
A7249_RS01455	PF01795	MraW methylase family
A7249_RS01460	PF17377	Family of unknown function (DUF5399)
A7249_RS01470	PF00308	Bacterial dnaA  protein
A7249_RS01470	PF11638	DnaA N-terminal domain
A7249_RS01470	PF08299	Bacterial dnaA protein helix-turn-helix
A7249_RS01485	PF03116	NQR2, RnfD, RnfE family
A7249_RS01490	PF04205	FMN-binding domain
A7249_RS01495	PF02508	Rnf-Nqr subunit, membrane protein
A7249_RS01500	PF02508	Rnf-Nqr subunit, membrane protein
A7249_RS01505	PF01597	Glycine cleavage H-protein
A7249_RS01515	PF13091	PLD-like domain
A7249_RS01525	PF07724	AAA domain (Cdc48 subfamily)
A7249_RS01525	PF17871	AAA lid domain
A7249_RS01525	PF02861	Clp amino terminal domain, pathogenicity island component
A7249_RS01525	PF10431	C-terminal, D2-small domain, of ClpB protein 
A7249_RS01525	PF00004	ATPase family associated with various cellular activities (AAA)
A7249_RS01545	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
A7249_RS01550	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
A7249_RS01555	PF00692	dUTPase
A7249_RS01560	PF01039	Carboxyl transferase domain
A7249_RS01560	PF17848	Acetyl-coA carboxylase zinc finger domain
A7249_RS01565	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
A7249_RS01565	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
A7249_RS01570	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A7249_RS01570	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A7249_RS01570	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A7249_RS01570	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A7249_RS01580	PF00035	Double-stranded RNA binding motif
A7249_RS01580	PF14622	Ribonuclease-III-like
A7249_RS01585	PF05362	Lon protease (S16) C-terminal proteolytic domain
A7249_RS01585	PF18073	Rubredoxin metal binding domain
A7249_RS01590	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
A7249_RS01600	PF00069	Protein kinase domain
A7249_RS01605	PF08264	Anticodon-binding domain of tRNA
A7249_RS01605	PF10458	Valyl tRNA synthetase tRNA binding arm
A7249_RS01605	PF00133	tRNA synthetases class I (I, L, M and V)
A7249_RS01625	PF01813	ATP synthase subunit D 
A7249_RS01630	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A7249_RS01630	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A7249_RS01635	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A7249_RS01635	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A7249_RS01635	PF16886	ATPsynthase alpha/beta subunit N-term extension
A7249_RS01640	PF10962	Protein of unknown function (DUF2764)
A7249_RS01645	PF06188	HrpE/YscL/FliH and V-type ATPase subunit E
A7249_RS01660	PF00923	Transaldolase/Fructose-6-phosphate aldolase
A7249_RS01665	PF00623	RNA polymerase Rpb1, domain 2
A7249_RS01665	PF04998	RNA polymerase Rpb1, domain 5
A7249_RS01665	PF05000	RNA polymerase Rpb1, domain 4
A7249_RS01665	PF04997	RNA polymerase Rpb1, domain 1
A7249_RS01665	PF04983	RNA polymerase Rpb1, domain 3
A7249_RS01670	PF04565	RNA polymerase Rpb2, domain 3
A7249_RS01670	PF04560	RNA polymerase Rpb2, domain 7
A7249_RS01670	PF04561	RNA polymerase Rpb2, domain 2
A7249_RS01670	PF10385	RNA polymerase beta subunit external 1 domain
A7249_RS01670	PF00562	RNA polymerase Rpb2, domain 6
A7249_RS01670	PF04563	RNA polymerase beta subunit
A7249_RS01675	PF00542	Ribosomal protein L7/L12 C-terminal domain
A7249_RS01675	PF16320	Ribosomal protein L7/L12 dimerisation domain
A7249_RS01680	PF00466	Ribosomal protein L10
A7249_RS01685	PF00687	Ribosomal protein L1p/L10e family
A7249_RS01690	PF03946	Ribosomal protein L11, N-terminal domain
A7249_RS01690	PF00298	Ribosomal protein L11, RNA binding domain
A7249_RS01695	PF02357	Transcription termination factor nusG
A7249_RS01710	PF03143	Elongation factor Tu C-terminal domain
A7249_RS01710	PF03144	Elongation factor Tu domain 2
A7249_RS01710	PF00009	Elongation factor Tu GTP binding domain
A7249_RS01720	PF01176	Translation initiation factor 1A / IF-1
A7249_RS01730	PF02657	Fe-S metabolism associated domain
A7249_RS01755	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
A7249_RS01760	PF00121	Triosephosphate isomerase
A7249_RS01765	PF02601	Exonuclease VII, large subunit
A7249_RS01765	PF13742	OB-fold nucleic acid binding domain
A7249_RS01770	PF02609	Exonuclease VII small subunit
A7249_RS01780	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
A7249_RS01780	PF02779	Transketolase, pyrimidine binding domain
A7249_RS01780	PF02780	Transketolase, C-terminal domain
A7249_RS01785	PF02887	Pyruvate kinase, alpha/beta domain
A7249_RS01785	PF00224	Pyruvate kinase, barrel domain
A7249_RS01790	PF17760	UvrA interaction domain
A7249_RS01790	PF17755	UvrA DNA-binding domain
A7249_RS01795	PF12169	DNA polymerase III subunits gamma and tau domain III
A7249_RS01800	PF02575	YbaB/EbfC DNA-binding family
A7249_RS01805	PF05524	PEP-utilising enzyme, N-terminal
A7249_RS01805	PF00391	PEP-utilising enzyme, mobile domain
A7249_RS01805	PF02896	PEP-utilising enzyme, TIM barrel domain
A7249_RS01810	PF00381	PTS HPr component phosphorylation site
A7249_RS01830	PF02780	Transketolase, C-terminal domain
A7249_RS01830	PF02779	Transketolase, pyrimidine binding domain
A7249_RS01835	PF00226	DnaJ domain
A7249_RS01835	PF01556	DnaJ C terminal domain
A7249_RS01835	PF00684	DnaJ central domain
A7249_RS01840	PF01165	Ribosomal protein S21
A7249_RS01845	PF00814	Glycoprotease family
A7249_RS01850	PF00004	ATPase family associated with various cellular activities (AAA)
A7249_RS01850	PF05362	Lon protease (S16) C-terminal proteolytic domain
A7249_RS01850	PF02190	ATP-dependent protease La (LON) substrate-binding domain 
A7249_RS01860	PF00753	Metallo-beta-lactamase superfamily
A7249_RS01865	PF02899	Phage integrase, N-terminal SAM-like domain
A7249_RS01865	PF00589	Phage integrase family
A7249_RS01870	PF12848	ABC transporter
A7249_RS01870	PF00005	ABC transporter
A7249_RS01875	PF02545	Maf-like protein
A7249_RS01895	PF01327	Polypeptide deformylase
A7249_RS01900	PF00398	Ribosomal RNA adenine dimethylase
A7249_RS01910	PF03190	Protein of unknown function, DUF255
A7249_RS01945	PF00701	Dihydrodipicolinate synthetase family
A7249_RS01950	PF00696	Amino acid kinase family
A7249_RS01955	PF02774	Semialdehyde dehydrogenase, dimerisation domain
A7249_RS01955	PF01118	Semialdehyde dehydrogenase, NAD binding domain
A7249_RS01960	PF01113	Dihydrodipicolinate reductase, N-terminus
A7249_RS01960	PF05173	Dihydrodipicolinate reductase, C-terminus
A7249_RS01970	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
A7249_RS01975	PF01202	Shikimate kinase
A7249_RS01980	PF01264	Chorismate synthase
A7249_RS01985	PF01761	3-dehydroquinate synthase
A7249_RS01990	PF01487	Type I 3-dehydroquinase
A7249_RS01990	PF01488	Shikimate / quinate 5-dehydrogenase
A7249_RS01990	PF08501	Shikimate dehydrogenase substrate binding domain
A7249_RS01995	PF11019	Protein of unknown function (DUF2608)
A7249_RS02000	PF04966	Carbohydrate-selective porin, OprB family
A7249_RS02005	PF01862	Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)
A7249_RS02015	PF01266	FAD dependent oxidoreductase
A7249_RS02015	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
A7249_RS02020	PF00056	lactate/malate dehydrogenase, NAD binding domain
A7249_RS02020	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
A7249_RS02025	PF17446	Late transcription unit A
A7249_RS02030	PF00342	Phosphoglucose isomerase
A7249_RS02035	PF01926	50S ribosome-binding GTPase
A7249_RS02035	PF13167	GTP-binding GTPase N-terminal
A7249_RS02035	PF16360	GTP-binding GTPase Middle Region
A7249_RS02040	PF12706	Beta-lactamase superfamily domain
A7249_RS02040	PF03099	Biotin/lipoate A/B protein ligase family
A7249_RS02045	PF00497	Bacterial extracellular solute-binding proteins, family 3
A7249_RS02050	PF01817	Chorismate mutase type II
A7249_RS02050	PF00793	DAHP synthetase I family
A7249_RS02070	PF01230	HIT domain
A7249_RS02075	PF03690	Uncharacterised protein family (UPF0160)
A7249_RS02085	PF02594	Uncharacterised ACR, YggU family COG1872
A7249_RS02095	PF00155	Aminotransferase class I and II
A7249_RS02110	PF04073	Aminoacyl-tRNA editing domain
A7249_RS02110	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A7249_RS02110	PF03129	Anticodon binding domain
A7249_RS02115	PF01628	HrcA protein C terminal domain
A7249_RS02120	PF01025	GrpE
A7249_RS02125	PF00012	Hsp70 protein
A7249_RS02130	PF08206	Ribonuclease B OB domain
A7249_RS02130	PF00773	RNB domain
A7249_RS02140	PF01380	SIS domain
A7249_RS02140	PF00571	CBS domain
A7249_RS02145	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A7249_RS02145	PF02817	e3 binding domain
A7249_RS02145	PF00364	Biotin-requiring enzyme
A7249_RS02150	PF00375	Sodium:dicarboxylate symporter family
A7249_RS02155	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
A7249_RS02160	PF00588	SpoU rRNA Methylase family
A7249_RS02165	PF17785	PUA-like domain
A7249_RS02165	PF10672	S-adenosylmethionine-dependent methyltransferase
A7249_RS02170	PF00677	Lumazine binding domain
A7249_RS02175	PF03477	ATP cone domain
A7249_RS02180	PF01258	Prokaryotic dksA/traR C4-type zinc finger
A7249_RS02185	PF01252	Signal peptidase (SPase) II
A7249_RS02190	PF01235	Sodium:alanine symporter family
A7249_RS02195	PF01743	Poly A polymerase head domain
A7249_RS02195	PF12626	Polymerase A arginine-rich C-terminus
A7249_RS02195	PF12627	Probable RNA and SrmB- binding site of polymerase A
A7249_RS02200	PF02684	Lipid-A-disaccharide synthetase
A7249_RS02200	PF07578	Lipid A Biosynthesis N-terminal domain
A7249_RS02205	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS02205	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS02210	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS02210	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS02210	PF03797	Autotransporter beta-domain
A7249_RS02215	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS02215	PF03797	Autotransporter beta-domain
A7249_RS02215	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS02230	PF01297	Zinc-uptake complex component A periplasmic
A7249_RS02235	PF00005	ABC transporter
A7249_RS02240	PF00950	ABC 3 transport family
A7249_RS02245	PF01018	GTP1/OBG
A7249_RS02245	PF01926	50S ribosome-binding GTPase
A7249_RS02250	PF01016	Ribosomal L27 protein
A7249_RS02255	PF00829	Ribosomal prokaryotic L21 protein
A7249_RS02280	PF02130	Uncharacterized protein family UPF0054
A7249_RS02285	PF00571	CBS domain
A7249_RS02285	PF03471	Transporter associated domain
A7249_RS02290	PF01740	STAS domain
A7249_RS02295	PF12228	Protein of unknown function (DUF3604)
A7249_RS02300	PF04055	Radical SAM superfamily
A7249_RS02310	PF01209	ubiE/COQ5 methyltransferase family
A7249_RS02315	PF03682	Uncharacterised protein family (UPF0158)
A7249_RS02320	PF01678	Diaminopimelate epimerase
A7249_RS02325	PF00574	Clp protease
A7249_RS02330	PF00464	Serine hydroxymethyltransferase
A7249_RS02340	PF02542	YgbB family
A7249_RS02345	PF00175	Oxidoreductase NAD-binding domain 
A7249_RS02345	PF00258	Flavodoxin
A7249_RS02345	PF00667	FAD binding domain
A7249_RS02350	PF00338	Ribosomal protein S10p/S20e
A7249_RS02355	PF00009	Elongation factor Tu GTP binding domain
A7249_RS02355	PF14492	Elongation Factor G, domain II
A7249_RS02355	PF03764	Elongation factor G, domain IV
A7249_RS02355	PF03144	Elongation factor Tu domain 2
A7249_RS02355	PF00679	Elongation factor G C-terminus
A7249_RS02360	PF00177	Ribosomal protein S7p/S5e
A7249_RS02365	PF00164	Ribosomal protein S12/S23
A7249_RS02375	PF03572	Peptidase family S41
A7249_RS02375	PF11818	C-terminal domain of tail specific protease (DUF3340)
A7249_RS02375	PF00595	PDZ domain
A7249_RS02375	PF17804	Tail specific protease N-terminal domain
A7249_RS02380	PF05745	Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
A7249_RS02385	PF01345	Domain of unknown function DUF11
A7249_RS02385	PF03504	Chlamydia cysteine-rich outer membrane protein 6
A7249_RS02390	PF03503	Chlamydia cysteine-rich outer membrane protein 3
A7249_RS02400	PF00749	tRNA synthetases class I (E and Q), catalytic domain
A7249_RS02405	PF12728	Helix-turn-helix domain
A7249_RS02410	PF02272	DHHA1 domain
A7249_RS02410	PF17768	RecJ OB domain
A7249_RS02410	PF01368	DHH family
A7249_RS02415	PF02355	Protein export membrane protein
A7249_RS02415	PF07549	SecD/SecF GG Motif
A7249_RS02435	PF01255	Putative undecaprenyl diphosphate synthase
A7249_RS02445	PF02224	Cytidylate kinase
A7249_RS02450	PF00501	AMP-binding enzyme
A7249_RS02450	PF01553	Acyltransferase
A7249_RS02455	PF03485	Arginyl tRNA synthetase N terminal domain
A7249_RS02455	PF05746	DALR anticodon binding domain
A7249_RS02455	PF00750	tRNA synthetases class I (R)
A7249_RS02460	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
A7249_RS02465	PF07577	Domain of Unknown Function (DUF1547)
A7249_RS02470	PF01709	Transcriptional regulator
A7249_RS02480	PF00472	RF-1 domain
A7249_RS02480	PF03462	PCRF domain
A7249_RS02490	PF00149	Calcineurin-like phosphoesterase
A7249_RS02495	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
A7249_RS02500	PF01416	tRNA pseudouridine synthase
A7249_RS02505	PF13419	Haloacid dehalogenase-like hydrolase
A7249_RS02525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A7249_RS02525	PF00512	His Kinase A (phospho-acceptor) domain
A7249_RS02530	PF02954	Bacterial regulatory protein, Fis family
A7249_RS02530	PF00072	Response regulator receiver domain
A7249_RS02530	PF00158	Sigma-54 interaction domain
A7249_RS02545	PF02565	Recombination protein O C terminal
A7249_RS02570	PF01809	Putative membrane protein insertion efficiency factor
A7249_RS02580	PF01588	Putative tRNA binding domain
A7249_RS02580	PF03484	tRNA synthetase B5 domain
A7249_RS02580	PF03483	B3/4 domain
A7249_RS02580	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
A7249_RS02580	PF03147	Ferredoxin-fold anticodon binding domain
A7249_RS02595	PF00528	Binding-protein-dependent transport system inner membrane component
A7249_RS02595	PF12911	N-terminal TM domain of oligopeptide transport permease C
A7249_RS02600	PF00528	Binding-protein-dependent transport system inner membrane component
A7249_RS02635	PF00762	Ferrochelatase
A7249_RS02655	PF00483	Nucleotidyl transferase
A7249_RS02665	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A7249_RS02665	PF07498	Rho termination factor, N-terminal domain
A7249_RS02665	PF07497	Rho termination factor, RNA-binding domain
A7249_RS02670	PF01121	Dephospho-CoA kinase
A7249_RS02675	PF00476	DNA polymerase family A
A7249_RS02675	PF01367	5'-3' exonuclease, C-terminal SAM fold
A7249_RS02675	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
A7249_RS02680	PF01343	Peptidase family S49
A7249_RS02685	PF03219	TLC ATP/ADP transporter
A7249_RS02690	PF01066	CDP-alcohol phosphatidyltransferase
A7249_RS02705	PF03796	DnaB-like helicase C terminal domain
A7249_RS02705	PF00772	DnaB-like helicase N terminal domain
A7249_RS02710	PF13932	GidA associated domain
A7249_RS02710	PF01134	Glucose inhibited division protein A
A7249_RS02715	PF03099	Biotin/lipoate A/B protein ligase family
A7249_RS02715	PF10437	Bacterial lipoate protein ligase C-terminus
A7249_RS02720	PF00334	Nucleoside diphosphate kinase
A7249_RS02725	PF01330	RuvA N terminal domain
A7249_RS02730	PF02075	Crossover junction endodeoxyribonuclease RuvC
A7249_RS02750	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A7249_RS02750	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
A7249_RS02755	PF01196	Ribosomal protein L17
A7249_RS02760	PF01000	RNA polymerase Rpb3/RpoA insert domain
A7249_RS02760	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
A7249_RS02760	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
A7249_RS02765	PF00411	Ribosomal protein S11
A7249_RS02770	PF00416	Ribosomal protein S13/S18
A7249_RS02775	PF00344	SecY translocase
A7249_RS02780	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
A7249_RS02785	PF00333	Ribosomal protein S5, N-terminal domain
A7249_RS02785	PF03719	Ribosomal protein S5, C-terminal domain
A7249_RS02790	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
A7249_RS02795	PF00347	Ribosomal protein L6
A7249_RS02800	PF00410	Ribosomal protein S8
A7249_RS02805	PF00281	Ribosomal protein L5
A7249_RS02805	PF00673	ribosomal L5P family C-terminus
A7249_RS02810	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
A7249_RS02810	PF00467	KOW motif
A7249_RS02815	PF00238	Ribosomal protein L14p/L23e
A7249_RS02820	PF00366	Ribosomal protein S17
A7249_RS02825	PF00831	Ribosomal L29 protein
A7249_RS02830	PF00252	Ribosomal protein L16p/L10e
A7249_RS02835	PF00189	Ribosomal protein S3, C-terminal domain
A7249_RS02835	PF07650	KH domain
A7249_RS02840	PF00237	Ribosomal protein L22p/L17e
A7249_RS02845	PF00203	Ribosomal protein S19
A7249_RS02850	PF03947	Ribosomal Proteins L2, C-terminal domain
A7249_RS02850	PF00181	Ribosomal Proteins L2, RNA binding domain
A7249_RS02855	PF00276	Ribosomal protein L23
A7249_RS02860	PF00573	Ribosomal protein L4/L1 family
A7249_RS02865	PF00297	Ribosomal protein L3
A7249_RS02875	PF00551	Formyl transferase
A7249_RS02875	PF02911	Formyl transferase, C-terminal domain
A7249_RS02880	PF00132	Bacterial transferase hexapeptide (six repeats)
A7249_RS02880	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
A7249_RS02885	PF07977	FabA-like domain
A7249_RS02890	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
A7249_RS02895	PF00795	Carbon-nitrogen hydrolase
A7249_RS02900	PF03061	Thioesterase superfamily
A7249_RS02905	PF00929	Exonuclease
A7249_RS02910	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
A7249_RS02915	PF10915	Protein of unknown function (DUF2709)
A7249_RS02925	PF00085	Thioredoxin
A7249_RS02930	PF00588	SpoU rRNA Methylase family
A7249_RS02935	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A7249_RS02935	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
A7249_RS02940	PF02938	GAD domain
A7249_RS02940	PF01336	OB-fold nucleic acid binding domain
A7249_RS02940	PF00152	tRNA synthetases class II (D, K and N) 
A7249_RS02945	PF13393	Histidyl-tRNA synthetase
A7249_RS02945	PF03129	Anticodon binding domain
A7249_RS02950	PF07690	Major Facilitator Superfamily
A7249_RS02955	PF07733	Bacterial DNA polymerase III alpha NTPase domain
A7249_RS02955	PF14579	Helix-hairpin-helix motif
A7249_RS02955	PF02811	PHP domain
A7249_RS02955	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
A7249_RS02985	PF00768	D-alanyl-D-alanine carboxypeptidase
A7249_RS02985	PF07943	Penicillin-binding protein 5, C-terminal domain
A7249_RS03000	PF01189	16S rRNA methyltransferase RsmB/F
A7249_RS03000	PF01029	NusB family
A7249_RS03005	PF05525	Branched-chain amino acid transport protein
A7249_RS03010	PF04434	SWIM zinc finger
A7249_RS03010	PF00176	SNF2 family N-terminal domain
A7249_RS03010	PF00271	Helicase conserved C-terminal domain
A7249_RS03020	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A7249_RS03020	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A7249_RS03025	PF04055	Radical SAM superfamily
A7249_RS03025	PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family
A7249_RS03030	PF01514	Secretory protein of YscJ/FliF family
A7249_RS03045	PF02108	Flagellar assembly protein FliH
A7249_RS03050	PF00813	FliP family
A7249_RS03055	PF01313	Bacterial export proteins, family 3
A7249_RS03060	PF01311	Bacterial export proteins, family 1
A7249_RS03085	PF07963	Prokaryotic N-terminal methylation motif
A7249_RS03090	PF00482	Type II secretion system (T2SS), protein F
A7249_RS03095	PF00437	Type II/IV secretion system protein
A7249_RS03100	PF11741	AMIN domain
A7249_RS03100	PF00263	Bacterial type II and III secretion system protein
A7249_RS03100	PF03958	Bacterial type II/III secretion system short domain
A7249_RS03100	PF07660	Secretin and TonB N terminus short domain
A7249_RS03110	PF01321	Creatinase/Prolidase N-terminal domain
A7249_RS03110	PF00557	Metallopeptidase family M24
A7249_RS03115	PF01119	DNA mismatch repair protein, C-terminal domain
A7249_RS03115	PF08676	MutL C terminal dimerisation domain
A7249_RS03135	PF04888	Secretion system effector C (SseC) like family 
A7249_RS03140	PF00892	EamA-like transporter family
A7249_RS03150	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A7249_RS03150	PF03129	Anticodon binding domain
A7249_RS03150	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A7249_RS03150	PF02824	TGS domain
A7249_RS03155	PF13614	AAA domain
A7249_RS03160	PF03677	Uncharacterised protein family (UPF0137)
A7249_RS03165	PF17435	Family of unknown function (DUF5414)
A7249_RS03170	PF00579	tRNA synthetases class I (W and Y)
A7249_RS03175	PF12344	Ultra-violet resistance protein B
A7249_RS03175	PF02151	UvrB/uvrC motif
A7249_RS03175	PF17757	UvrB interaction domain
A7249_RS03175	PF04851	Type III restriction enzyme, res subunit
A7249_RS03175	PF00271	Helicase conserved C-terminal domain
A7249_RS03180	PF00113	Enolase, C-terminal TIM barrel domain
A7249_RS03180	PF03952	Enolase, N-terminal domain
A7249_RS03200	PF13085	2Fe-2S iron-sulfur cluster binding domain
A7249_RS03200	PF13183	4Fe-4S dicluster domain
A7249_RS03205	PF02910	Fumarate reductase flavoprotein C-term
A7249_RS03205	PF00890	FAD binding domain
A7249_RS03210	PF00890	FAD binding domain
A7249_RS03210	PF02910	Fumarate reductase flavoprotein C-term
A7249_RS03225	PF01026	TatD related DNase
A7249_RS03235	PF01618	MotA/TolQ/ExbB proton channel family
A7249_RS03250	PF07676	WD40-like Beta Propeller Repeat
A7249_RS03255	PF00691	OmpA family
A7249_RS03260	PF01476	LysM domain
A7249_RS03270	PF00578	AhpC/TSA family
A7249_RS03270	PF10417	C-terminal domain of 1-Cys peroxiredoxin
A7249_RS03280	PF00118	TCP-1/cpn60 chaperonin family
A7249_RS03285	PF07075	Protein of unknown function (DUF1343)
A7249_RS03290	PF01725	Ham1 family
A7249_RS03300	PF03167	Uracil DNA glycosylase superfamily
A7249_RS03305	PF00580	UvrD/REP helicase N-terminal domain
A7249_RS03305	PF13361	UvrD-like helicase C-terminal domain
A7249_RS03310	PF00309	Sigma-54 factor, Activator interacting domain (AID) 
A7249_RS03310	PF04963	Sigma-54 factor, core binding domain
A7249_RS03310	PF04552	Sigma-54, DNA binding domain
A7249_RS03315	PF03070	TENA/THI-4/PQQC family
A7249_RS03320	PF01996	F420-0:Gamma-glutamyl ligase
A7249_RS03320	PF00881	Nitroreductase family
A7249_RS03325	PF00186	Dihydrofolate reductase
A7249_RS03330	PF00809	Pterin binding enzyme
A7249_RS03330	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
A7249_RS03335	PF02152	Dihydroneopterin aldolase
A7249_RS03340	PF03979	Sigma-70 factor, region 1.1
A7249_RS03340	PF04539	Sigma-70 region 3
A7249_RS03340	PF04542	Sigma-70 region 2 
A7249_RS03340	PF04545	Sigma-70, region 4
A7249_RS03340	PF00140	Sigma-70 factor, region 1.2
A7249_RS03345	PF06785	Uncharacterised protein family (UPF0242) N-terminus
A7249_RS03345	PF18095	UPF0242 C-terminal PAS-like domain
A7249_RS03350	PF01649	Ribosomal protein S20
A7249_RS03385	PF03023	Lipid II flippase MurJ
A7249_RS03390	PF01261	Xylose isomerase-like TIM barrel
A7249_RS03395	PF01479	S4 domain
A7249_RS03395	PF00163	Ribosomal protein S4/S9 N-terminal domain
A7249_RS03400	PF17773	UPF0176 acylphosphatase like domain
A7249_RS03400	PF00581	Rhodanese-like domain
A7249_RS03400	PF12368	Rhodanase C-terminal
A7249_RS03405	PF00348	Polyprenyl synthetase
A7249_RS03410	PF00132	Bacterial transferase hexapeptide (six repeats)
A7249_RS03410	PF12804	MobA-like NTP transferase domain
A7249_RS03415	PF00486	Transcriptional regulatory protein, C terminal
A7249_RS03430	PF02511	Thymidylate synthase complementing protein
A7249_RS03435	PF00490	Delta-aminolevulinic acid dehydratase
A7249_RS03440	PF05896	Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
A7249_RS03440	PF11973	NQRA C-terminal domain
A7249_RS03450	PF01272	Transcription elongation factor, GreA/GreB, C-term
A7249_RS03450	PF03449	Transcription elongation factor, N-terminal
A7249_RS03460	PF00155	Aminotransferase class I and II
A7249_RS03470	PF13361	UvrD-like helicase C-terminal domain
A7249_RS03470	PF00580	UvrD/REP helicase N-terminal domain
A7249_RS03480	PF07690	Major Facilitator Superfamily
A7249_RS03490	PF01131	DNA topoisomerase
A7249_RS03490	PF01751	Toprim domain
A7249_RS03490	PF01396	Topoisomerase DNA binding C4 zinc finger
A7249_RS03495	PF01207	Dihydrouridine synthase (Dus)
A7249_RS03520	PF01812	5-formyltetrahydrofolate cyclo-ligase family
A7249_RS03530	PF00154	recA bacterial DNA recombination protein
A7249_RS03540	PF13538	UvrD-like helicase C-terminal domain
A7249_RS03550	PF00005	ABC transporter
A7249_RS03560	PF00793	DAHP synthetase I family
A7249_RS03580	PF00849	RNA pseudouridylate synthase
A7249_RS03580	PF01479	S4 domain
A7249_RS03590	PF00521	DNA gyrase/topoisomerase IV, subunit A
A7249_RS03595	PF00204	DNA gyrase B
A7249_RS03595	PF00986	DNA gyrase B subunit, carboxyl terminus
A7249_RS03595	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A7249_RS03595	PF01751	Toprim domain
A7249_RS03600	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
A7249_RS03605	PF05932	Tir chaperone protein (CesT) family
A7249_RS03615	PF17376	Family of unknown function (DUF5398)
A7249_RS03620	PF17401	Family of unknown function (DUF5407)
A7249_RS03635	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A7249_RS03635	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A7249_RS03635	PF18269	T3SS EscN ATPase C-terminal domain
A7249_RS03645	PF17458	Family of unknown function (DUF5421)
A7249_RS03655	PF00069	Protein kinase domain
A7249_RS03655	PF03793	PASTA domain
A7249_RS03660	PF00263	Bacterial type II and III secretion system protein
A7249_RS03660	PF03958	Bacterial type II/III secretion system short domain
A7249_RS03670	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
A7249_RS03690	PF01765	Ribosome recycling factor
A7249_RS03695	PF00696	Amino acid kinase family
A7249_RS03700	PF00889	Elongation factor TS
A7249_RS03705	PF00318	Ribosomal protein S2
A7249_RS03715	PF01308	Chlamydia major outer membrane protein
A7249_RS03720	PF00905	Penicillin binding protein transpeptidase domain
A7249_RS03720	PF03717	Penicillin-binding Protein dimerisation domain
A7249_RS03730	PF01458	Uncharacterized protein family (UPF0051)
A7249_RS03735	PF00005	ABC transporter
A7249_RS03740	PF01458	Uncharacterized protein family (UPF0051)
A7249_RS03745	PF00266	Aminotransferase class-V
A7249_RS03750	PF17762	HTH domain found in ParB protein
A7249_RS03750	PF02195	ParB-like nuclease domain
A7249_RS03755	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A7249_RS03755	PF00005	ABC transporter
A7249_RS03760	PF00005	ABC transporter
A7249_RS03760	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A7249_RS03765	PF01865	Protein of unknown function DUF47
A7249_RS03770	PF01384	Phosphate transporter family
A7249_RS03775	PF00162	Phosphoglycerate kinase
A7249_RS03795	PF10576	Iron-sulfur binding domain of endonuclease III
A7249_RS03795	PF00633	Helix-hairpin-helix motif
A7249_RS03795	PF00730	HhH-GPD superfamily base excision DNA repair protein
A7249_RS03800	PF10396	GTP-binding protein TrmE N-terminus
A7249_RS03800	PF01926	50S ribosome-binding GTPase
A7249_RS03800	PF12631	MnmE helical domain
A7249_RS03805	PF02666	Phosphatidylserine decarboxylase
A7249_RS03815	PF01043	SecA preprotein cross-linking domain
A7249_RS03815	PF07517	SecA DEAD-like domain
A7249_RS03815	PF07516	SecA Wing and Scaffold domain
A7249_RS03825	PF01926	50S ribosome-binding GTPase
A7249_RS03825	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
A7249_RS03830	PF13735	tRNA nucleotidyltransferase domain 2 putative
A7249_RS03830	PF01743	Poly A polymerase head domain
A7249_RS03830	PF12627	Probable RNA and SrmB- binding site of polymerase A
A7249_RS03835	PF10431	C-terminal, D2-small domain, of ClpB protein 
A7249_RS03835	PF07724	AAA domain (Cdc48 subfamily)
A7249_RS03835	PF06689	ClpX C4-type zinc finger
A7249_RS03840	PF00574	Clp protease
A7249_RS03845	PF05697	Bacterial trigger factor protein (TF)
A7249_RS03845	PF05698	Bacterial trigger factor protein (TF) C-terminus
A7249_RS03860	PF04434	SWIM zinc finger
A7249_RS03860	PF00271	Helicase conserved C-terminal domain
A7249_RS03860	PF00176	SNF2 family N-terminal domain
A7249_RS03870	PF17297	Phosphoenolpyruvate carboxykinase N-terminal domain
A7249_RS03870	PF00821	Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
A7249_RS03885	PF01308	Chlamydia major outer membrane protein
A7249_RS03890	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
A7249_RS03890	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
A7249_RS03895	PF01704	UTP--glucose-1-phosphate uridylyltransferase
A7249_RS03905	PF18269	T3SS EscN ATPase C-terminal domain
A7249_RS03905	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A7249_RS03905	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A7249_RS03925	PF00266	Aminotransferase class-V
A7249_RS03930	PF00300	Histidine phosphatase superfamily (branch 1)
A7249_RS03935	PF01479	S4 domain
A7249_RS03935	PF00849	RNA pseudouridylate synthase
A7249_RS03945	PF08279	HTH domain
A7249_RS03945	PF02237	Biotin protein ligase C terminal domain
A7249_RS03945	PF03099	Biotin/lipoate A/B protein ligase family
A7249_RS03950	PF01098	Cell cycle protein
A7249_RS03955	PF00403	Heavy-metal-associated domain
A7249_RS03965	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A7249_RS03965	PF02403	Seryl-tRNA synthetase N-terminal domain
A7249_RS03970	PF01872	RibD C-terminal domain
A7249_RS03970	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
A7249_RS03975	PF00925	GTP cyclohydrolase II
A7249_RS03975	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
A7249_RS03980	PF00885	6,7-dimethyl-8-ribityllumazine synthase
A7249_RS03995	PF01235	Sodium:alanine symporter family
A7249_RS04000	PF01161	Phosphatidylethanolamine-binding protein
A7249_RS04010	PF00753	Metallo-beta-lactamase superfamily
A7249_RS04015	PF01580	FtsK/SpoIIIE family
A7249_RS04015	PF17854	FtsK alpha domain
A7249_RS04015	PF13491	4TM region of DNA translocase FtsK/SpoIIIE
A7249_RS04015	PF09397	Ftsk gamma domain
A7249_RS04045	PF00111	2Fe-2S iron-sulfur cluster binding domain
A7249_RS04045	PF00175	Oxidoreductase NAD-binding domain 
A7249_RS04050	PF02699	Preprotein translocase subunit
A7249_RS04055	PF05958	tRNA (Uracil-5-)-methyltransferase
A7249_RS04060	PF07432	Histone H1-like protein Hc1
A7249_RS04070	PF01593	Flavin containing amine oxidoreductase
A7249_RS04075	PF06969	HemN C-terminal domain
A7249_RS04075	PF04055	Radical SAM superfamily
A7249_RS04080	PF01208	Uroporphyrinogen decarboxylase (URO-D)
A7249_RS04085	PF02559	CarD-like/TRCF domain
A7249_RS04085	PF17757	UvrB interaction domain
A7249_RS04085	PF03461	TRCF domain
A7249_RS04085	PF00271	Helicase conserved C-terminal domain
A7249_RS04085	PF00270	DEAD/DEAH box helicase
A7249_RS04090	PF01411	tRNA synthetases class II (A)
A7249_RS04090	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A7249_RS04090	PF02272	DHHA1 domain
A7249_RS04115	PF02780	Transketolase, C-terminal domain
A7249_RS04115	PF00456	Transketolase, thiamine diphosphate binding domain
A7249_RS04115	PF02779	Transketolase, pyrimidine binding domain
A7249_RS04125	PF01132	Elongation factor P (EF-P) OB domain
A7249_RS04125	PF08207	Elongation factor P (EF-P) KOW-like domain
A7249_RS04125	PF09285	Elongation factor P, C-terminal
A7249_RS04140	PF00118	TCP-1/cpn60 chaperonin family
A7249_RS04150	PF08245	Mur ligase middle domain
A7249_RS04150	PF02875	Mur ligase family, glutamate ligase domain
A7249_RS04150	PF01225	Mur ligase family, catalytic domain
A7249_RS04155	PF00953	Glycosyl transferase family 4
A7249_RS04160	PF02875	Mur ligase family, glutamate ligase domain
A7249_RS04160	PF08245	Mur ligase middle domain
A7249_RS04170	PF01098	Cell cycle protein
A7249_RS04175	PF03033	Glycosyltransferase family 28 N-terminal domain
A7249_RS04175	PF04101	Glycosyltransferase family 28 C-terminal domain
A7249_RS04180	PF01820	D-ala D-ala ligase N-terminus
A7249_RS04180	PF08245	Mur ligase middle domain
A7249_RS04180	PF02875	Mur ligase family, glutamate ligase domain
A7249_RS04180	PF07478	D-ala D-ala ligase C-terminus
A7249_RS04180	PF01225	Mur ligase family, catalytic domain
A7249_RS04195	PF01740	STAS domain
A7249_RS04205	PF04055	Radical SAM superfamily
A7249_RS04220	PF00109	Beta-ketoacyl synthase, N-terminal domain
A7249_RS04220	PF02801	Beta-ketoacyl synthase, C-terminal domain
A7249_RS04225	PF00293	NUDIX domain
A7249_RS04230	PF00719	Inorganic pyrophosphatase
A7249_RS04240	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
A7249_RS04240	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A7249_RS04245	PF00459	Inositol monophosphatase family
A7249_RS04255	PF01553	Acyltransferase
A7249_RS04255	PF00501	AMP-binding enzyme
A7249_RS04260	PF00155	Aminotransferase class I and II
A7249_RS04265	PF17764	3′ DNA-binding domain (3′BD)
A7249_RS04265	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
A7249_RS04265	PF18074	Primosomal protein N C-terminal domain
A7249_RS04265	PF04851	Type III restriction enzyme, res subunit
A7249_RS04280	PF00152	tRNA synthetases class II (D, K and N) 
A7249_RS04280	PF01336	OB-fold nucleic acid binding domain
A7249_RS04285	PF09190	DALR domain
A7249_RS04285	PF01406	tRNA synthetases class I (C) catalytic domain
A7249_RS04295	PF00825	Ribonuclease P
A7249_RS04300	PF00468	Ribosomal protein L34
A7249_RS04305	PF00444	Ribosomal protein L36
A7249_RS04310	PF00253	Ribosomal protein S14p/S29e
A7249_RS04330	PF01541	GIY-YIG catalytic domain
A7249_RS04330	PF08459	UvrC Helix-hairpin-helix N-terminal
A7249_RS04335	PF05188	MutS domain II
A7249_RS04335	PF05192	MutS domain III
A7249_RS04335	PF05190	MutS family domain IV
A7249_RS04335	PF00488	MutS domain V
A7249_RS04335	PF01624	MutS domain I
A7249_RS04345	PF01807	CHC2 zinc finger
A7249_RS04345	PF08275	DNA primase catalytic core, N-terminal domain
A7249_RS04360	PF02091	Glycyl-tRNA synthetase alpha subunit
A7249_RS04360	PF02092	Glycyl-tRNA synthetase beta subunit
A7249_RS04365	PF01066	CDP-alcohol phosphatidyltransferase
A7249_RS04370	PF00534	Glycosyl transferases group 1
A7249_RS04370	PF08323	Starch synthase catalytic domain
A7249_RS04380	PF14693	Ribosomal protein TL5, C-terminal domain
A7249_RS04380	PF01386	Ribosomal L25p family
A7249_RS04385	PF01195	Peptidyl-tRNA hydrolase
A7249_RS04390	PF01250	Ribosomal protein S6
A7249_RS04395	PF01084	Ribosomal protein S18
A7249_RS04400	PF03948	Ribosomal protein L9, C-terminal domain
A7249_RS04400	PF01281	Ribosomal protein L9, N-terminal domain
A7249_RS04405	PF00288	GHMP kinases N terminal domain
A7249_RS04420	PF05193	Peptidase M16 inactive domain
A7249_RS04420	PF00675	Insulinase (Peptidase family M16)
A7249_RS04430	PF00575	S1 RNA binding domain
A7249_RS04430	PF10150	Ribonuclease E/G family
A7249_RS04440	PF01783	Ribosomal L32p protein family
A7249_RS04445	PF02504	Fatty acid synthesis protein
A7249_RS04450	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS04450	PF03797	Autotransporter beta-domain
A7249_RS04450	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS04470	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A7249_RS04470	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A7249_RS04470	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A7249_RS04470	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A7249_RS04475	PF01380	SIS domain
A7249_RS04480	PF03222	Tryptophan/tyrosine permease family
A7249_RS04485	PF03222	Tryptophan/tyrosine permease family
A7249_RS04490	PF01027	Inhibitor of apoptosis-promoting Bax1
A7249_RS04495	PF00448	SRP54-type protein, GTPase domain
A7249_RS04500	PF00549	CoA-ligase
A7249_RS04500	PF08442	ATP-grasp domain
A7249_RS04505	PF00549	CoA-ligase
A7249_RS04505	PF02629	CoA binding domain
A7249_RS04510	PF13180	PDZ domain
A7249_RS04510	PF17820	PDZ domain
A7249_RS04515	PF05193	Peptidase M16 inactive domain
A7249_RS04515	PF00675	Insulinase (Peptidase family M16)
A7249_RS04515	PF08367	Peptidase M16C associated
A7249_RS04520	PF02646	RmuC family
A7249_RS04525	PF01066	CDP-alcohol phosphatidyltransferase
A7249_RS04530	PF03477	ATP cone domain
A7249_RS04530	PF00317	Ribonucleotide reductase, all-alpha domain
A7249_RS04530	PF02867	Ribonucleotide reductase, barrel domain
A7249_RS04535	PF00268	Ribonucleotide reductase, small chain
A7249_RS04545	PF06962	Putative rRNA methylase
A7249_RS04550	PF01565	FAD binding domain 
A7249_RS04550	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
A7249_RS04555	PF01029	NusB family
A7249_RS04560	PF05198	Translation initiation factor IF-3, N-terminal domain
A7249_RS04560	PF00707	Translation initiation factor IF-3, C-terminal domain
A7249_RS04565	PF01632	Ribosomal protein L35
A7249_RS04570	PF00453	Ribosomal protein L20
A7249_RS04575	PF01409	tRNA synthetases class II core domain (F)
A7249_RS04575	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
A7249_RS04600	PF01171	PP-loop family
A7249_RS04605	PF00004	ATPase family associated with various cellular activities (AAA)
A7249_RS04605	PF17862	AAA+ lid domain
A7249_RS04605	PF01434	Peptidase family M41
A7249_RS04610	PF00575	S1 RNA binding domain
A7249_RS04610	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
A7249_RS04610	PF03725	3' exoribonuclease family, domain 2
A7249_RS04610	PF01138	3' exoribonuclease family, domain 1
A7249_RS04610	PF00013	KH domain
A7249_RS04615	PF00312	Ribosomal protein S15
A7249_RS04620	PF14437	MafB19-like deaminase
A7249_RS04660	PF00557	Metallopeptidase family M24
A7249_RS04660	PF02810	SEC-C motif
A7249_RS04665	PF01914	MarC family integral membrane protein
A7249_RS04680	PF10415	Fumarase C C-terminus
A7249_RS04680	PF00206	Lyase
A7249_RS04685	PF00916	Sulfate permease family
A7249_RS04685	PF01740	STAS domain
A7249_RS04695	PF03600	Citrate transporter
A7249_RS04700	PF03572	Peptidase family S41
A7249_RS04700	PF17816	PDZ domain
A7249_RS04705	PF02401	LytB protein
A7249_RS04740	PF00589	Phage integrase family
A7249_RS04740	PF02899	Phage integrase, N-terminal SAM-like domain
A7249_RS04750	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
A7249_RS04750	PF02806	Alpha amylase, C-terminal all-beta domain
A7249_RS04750	PF00128	Alpha amylase, catalytic domain
A7249_RS04755	PF02902	Ulp1 protease family, C-terminal catalytic domain
A7249_RS04760	PF02902	Ulp1 protease family, C-terminal catalytic domain
A7249_RS04765	PF03797	Autotransporter beta-domain
A7249_RS04765	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS04765	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS04770	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS04770	PF03797	Autotransporter beta-domain
A7249_RS04775	PF07548	Chlamydia polymorphic membrane protein middle domain
A7249_RS04775	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS04780	PF02415	Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
A7249_RS04780	PF07548	Chlamydia polymorphic membrane protein middle domain
