locus-tag class description L3404_RS00015 PF02686 Glu-tRNAGln amidotransferase C subunit L3404_RS00020 PF01425 Amidase L3404_RS00025 PF02934 GatB/GatE catalytic domain L3404_RS00025 PF02637 GatB domain L3404_RS00030 PF17461 Family of unknown function (DUF5423) L3404_RS00035 PF17459 Family of unknown function (DUF5422) L3404_RS00045 PF11858 Domain of unknown function (DUF3378) L3404_RS00045 PF01351 Ribonuclease HII L3404_RS00055 PF03279 Bacterial lipid A biosynthesis acyltransferase L3404_RS00065 PF02457 DisA bacterial checkpoint controller nucleotide-binding L3404_RS00070 PF01654 Cytochrome bd terminal oxidase subunit I L3404_RS00075 PF02322 Cytochrome bd terminal oxidase subunit II L3404_RS00080 PF02562 PhoH-like protein L3404_RS00080 PF13638 PIN domain L3404_RS00100 PF08264 Anticodon-binding domain of tRNA L3404_RS00100 PF00133 tRNA synthetases class I (I, L, M and V) L3404_RS00105 PF10502 Signal peptidase, peptidase S26 L3404_RS00105 PF10502 Signal peptidase, peptidase S26 L3404_RS00115 PF01197 Ribosomal protein L31 L3404_RS00120 PF03462 PCRF domain L3404_RS00120 PF00472 RF-1 domain L3404_RS00125 PF05175 Methyltransferase small domain L3404_RS00125 PF17827 PrmC N-terminal domain L3404_RS00130 PF02978 Signal peptide binding domain L3404_RS00130 PF00448 SRP54-type protein, GTPase domain L3404_RS00130 PF02881 SRP54-type protein, helical bundle domain L3404_RS00135 PF00886 Ribosomal protein S16 L3404_RS00140 PF01746 tRNA (Guanine-1)-methyltransferase L3404_RS00145 PF01245 Ribosomal protein L19 L3404_RS00150 PF01351 Ribonuclease HII L3404_RS00155 PF00625 Guanylate kinase L3404_RS00165 PF09334 tRNA synthetases class I (M) L3404_RS00165 PF08264 Anticodon-binding domain of tRNA L3404_RS00170 PF13538 UvrD-like helicase C-terminal domain L3404_RS00170 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain L3404_RS00170 PF14490 Helix-hairpin-helix containing domain L3404_RS00180 PF09825 Biotin-protein ligase, N terminal L3404_RS00205 PF00692 dUTPase L3404_RS00215 PF05496 Holliday junction DNA helicase RuvB P-loop domain L3404_RS00215 PF17864 RuvB AAA lid domain L3404_RS00215 PF05491 RuvB C-terminal winged helix domain L3404_RS00220 PF08486 Stage II sporulation protein L3404_RS00225 PF00128 Alpha amylase, catalytic domain L3404_RS00225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) L3404_RS00235 PF00436 Single-strand binding protein family L3404_RS00240 PF00883 Cytosol aminopeptidase family, catalytic domain L3404_RS00240 PF02789 Cytosol aminopeptidase family, N-terminal domain L3404_RS00245 PF07382 Histone H1-like nucleoprotein HC2 L3404_RS00255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases L3404_RS00275 PF06969 HemN C-terminal domain L3404_RS00275 PF04055 Radical SAM superfamily L3404_RS00285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L3404_RS00285 PF16078 2-oxoglutarate dehydrogenase N-terminus L3404_RS00285 PF02779 Transketolase, pyrimidine binding domain L3404_RS00285 PF16870 2-oxoglutarate dehydrogenase C-terminal L3404_RS00285 PF00676 Dehydrogenase E1 component L3404_RS00290 PF02817 e3 binding domain L3404_RS00290 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L3404_RS00290 PF00364 Biotin-requiring enzyme L3404_RS00300 PF04551 GcpE protein L3404_RS00310 PF00111 2Fe-2S iron-sulfur cluster binding domain L3404_RS00320 PF00771 FHIPEP family L3404_RS00325 PF04542 Sigma-70 region 2 L3404_RS00325 PF04539 Sigma-70 region 3 L3404_RS00325 PF04545 Sigma-70, region 4 L3404_RS00330 PF00579 tRNA synthetases class I (W and Y) L3404_RS00330 PF01479 S4 domain L3404_RS00335 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain L3404_RS00335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase L3404_RS00340 PF03144 Elongation factor Tu domain 2 L3404_RS00340 PF00009 Elongation factor Tu GTP binding domain L3404_RS00340 PF06421 GTP-binding protein LepA C-terminus L3404_RS00340 PF00679 Elongation factor G C-terminus L3404_RS00345 PF03219 TLC ATP/ADP transporter L3404_RS00355 PF01297 Zinc-uptake complex component A periplasmic L3404_RS00360 PF00005 ABC transporter L3404_RS00365 PF00950 ABC 3 transport family L3404_RS00365 PF02742 Iron dependent repressor, metal binding and dimerisation domain L3404_RS00370 PF00950 ABC 3 transport family L3404_RS00375 PF13288 DXP reductoisomerase C-terminal domain L3404_RS00375 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase L3404_RS00375 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain L3404_RS00380 PF02163 Peptidase family M50 L3404_RS00390 PF02463 RecF/RecN/SMC N terminal domain L3404_RS00395 PF00712 DNA polymerase III beta subunit, N-terminal domain L3404_RS00395 PF02768 DNA polymerase III beta subunit, C-terminal domain L3404_RS00395 PF02767 DNA polymerase III beta subunit, central domain L3404_RS00400 PF01668 SmpB protein L3404_RS00405 PF02424 ApbE family L3404_RS00410 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain L3404_RS00410 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain L3404_RS00420 PF17455 Late transcription unit B L3404_RS00445 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase L3404_RS00450 PF00830 Ribosomal L28 family L3404_RS00455 PF02446 4-alpha-glucanotransferase L3404_RS00470 PF00771 FHIPEP family L3404_RS00475 PF01312 FlhB HrpN YscU SpaS Family L3404_RS00480 PF01926 50S ribosome-binding GTPase L3404_RS00480 PF06071 Protein of unknown function (DUF933) L3404_RS00485 PF01687 Riboflavin kinase L3404_RS00485 PF06574 FAD synthetase L3404_RS00490 PF16198 tRNA pseudouridylate synthase B C-terminal domain L3404_RS00490 PF01509 TruB family pseudouridylate synthase (N terminal domain) L3404_RS00495 PF02033 Ribosome-binding factor A L3404_RS00500 PF00009 Elongation factor Tu GTP binding domain L3404_RS00500 PF04760 Translation initiation factor IF-2, N-terminal region L3404_RS00500 PF11987 Translation-initiation factor 2 L3404_RS00505 PF13184 NusA-like KH domain L3404_RS00505 PF08529 NusA N-terminal domain L3404_RS00505 PF00575 S1 RNA binding domain L3404_RS00510 PF00575 S1 RNA binding domain L3404_RS00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3404_RS00520 PF01648 4'-phosphopantetheinyl transferase superfamily L3404_RS00550 PF00849 RNA pseudouridylate synthase L3404_RS00555 PF14815 NUDIX domain L3404_RS00555 PF00730 HhH-GPD superfamily base excision DNA repair protein L3404_RS00555 PF00633 Helix-hairpin-helix motif L3404_RS00560 PF01784 NIF3 (NGG1p interacting factor 3) L3404_RS00570 PF00118 TCP-1/cpn60 chaperonin family L3404_RS00575 PF00166 Chaperonin 10 Kd subunit L3404_RS00580 PF08439 Oligopeptidase F L3404_RS00580 PF01432 Peptidase family M3 L3404_RS00585 PF00004 ATPase family associated with various cellular activities (AAA) L3404_RS00585 PF07724 AAA domain (Cdc48 subfamily) L3404_RS00585 PF17871 AAA lid domain L3404_RS00585 PF02861 Clp amino terminal domain, pathogenicity island component L3404_RS00585 PF10431 C-terminal, D2-small domain, of ClpB protein L3404_RS00595 PF17628 Inclusion membrane protein D L3404_RS00600 PF17627 Inclusion membrane protein E L3404_RS00605 PF17626 Inclusion membrane protein F L3404_RS00625 PF00834 Ribulose-phosphate 3 epimerase family L3404_RS00630 PF09285 Elongation factor P, C-terminal L3404_RS00630 PF08207 Elongation factor P (EF-P) KOW-like domain L3404_RS00630 PF01132 Elongation factor P (EF-P) OB domain L3404_RS00635 PF00364 Biotin-requiring enzyme L3404_RS00640 PF02785 Biotin carboxylase C-terminal domain L3404_RS00640 PF00289 Biotin carboxylase, N-terminal domain L3404_RS00640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L3404_RS00645 PF00572 Ribosomal protein L13 L3404_RS00650 PF00380 Ribosomal protein S9/S16 L3404_RS00665 PF00528 Binding-protein-dependent transport system inner membrane component L3404_RS00670 PF00005 ABC transporter L3404_RS00705 PF01300 Telomere recombination L3404_RS00715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L3404_RS00725 PF03695 Uncharacterised protein family (UPF0149) L3404_RS00725 PF02810 SEC-C motif L3404_RS00755 PF00069 Protein kinase domain L3404_RS00755 PF03781 Sulfatase-modifying factor enzyme 1 L3404_RS00760 PF00533 BRCA1 C Terminus (BRCT) domain L3404_RS00760 PF01653 NAD-dependent DNA ligase adenylation domain L3404_RS00760 PF03120 NAD-dependent DNA ligase OB-fold domain L3404_RS00760 PF12826 Helix-hairpin-helix motif L3404_RS00770 PF01494 FAD binding domain L3404_RS00780 PF00471 Ribosomal protein L33 L3404_RS00790 PF00005 ABC transporter L3404_RS00820 PF13091 PLD-like domain L3404_RS00820 PF13396 Phospholipase_D-nuclease N-terminal L3404_RS00860 PF01371 Trp repressor protein L3404_RS00870 PF00291 Pyridoxal-phosphate dependent enzyme L3404_RS00875 PF00290 Tryptophan synthase alpha chain L3404_RS00890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L3404_RS00895 PF02600 Disulfide bond formation protein DsbB L3404_RS00915 PF00005 ABC transporter L3404_RS00935 PF02348 Cytidylyltransferase L3404_RS00940 PF06418 CTP synthase N-terminus L3404_RS00940 PF00117 Glutamine amidotransferase class-I L3404_RS00945 PF03652 Holliday junction resolvase L3404_RS00950 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain L3404_RS00950 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain L3404_RS00955 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase L3404_RS00960 PF12170 DNA polymerase III tau subunit V interacting with alpha L3404_RS00960 PF12169 DNA polymerase III subunits gamma and tau domain III L3404_RS00965 PF02223 Thymidylate kinase L3404_RS00970 PF00521 DNA gyrase/topoisomerase IV, subunit A L3404_RS00970 PF03989 DNA gyrase C-terminal domain, beta-propeller L3404_RS00975 PF00204 DNA gyrase B L3404_RS00975 PF00986 DNA gyrase B subunit, carboxyl terminus L3404_RS00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L3404_RS00975 PF01751 Toprim domain L3404_RS00990 PF01702 Queuine tRNA-ribosyltransferase L3404_RS00995 PF03448 MgtE intracellular N domain L3404_RS00995 PF01769 Divalent cation transporter L3404_RS00995 PF00571 CBS domain L3404_RS01010 PF00814 Glycoprotease family L3404_RS01015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle L3404_RS01020 PF00528 Binding-protein-dependent transport system inner membrane component L3404_RS01025 PF12911 N-terminal TM domain of oligopeptide transport permease C L3404_RS01025 PF00528 Binding-protein-dependent transport system inner membrane component L3404_RS01030 PF00005 ABC transporter L3404_RS01030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L3404_RS01035 PF00005 ABC transporter L3404_RS01035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L3404_RS01040 PF06685 Protein of unknown function (DUF1186) L3404_RS01045 PF00939 Sodium:sulfate symporter transmembrane region L3404_RS01050 PF00365 Phosphofructokinase L3404_RS01060 PF00365 Phosphofructokinase L3404_RS01075 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) L3404_RS01080 PF09334 tRNA synthetases class I (M) L3404_RS01080 PF13603 Leucyl-tRNA synthetase, Domain 2 L3404_RS01080 PF08264 Anticodon-binding domain of tRNA L3404_RS01085 PF00202 Aminotransferase class-III L3404_RS01090 PF02622 Uncharacterized ACR, COG1678 L3404_RS01100 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) L3404_RS01110 PF01791 DeoC/LacD family aldolase L3404_RS01115 PF13520 Amino acid permease L3404_RS01120 PF01171 PP-loop family L3404_RS01125 PF01975 Survival protein SurE L3404_RS01130 PF01040 UbiA prenyltransferase family L3404_RS01135 PF02441 Flavoprotein L3404_RS01140 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) L3404_RS01140 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 L3404_RS01200 PF00375 Sodium:dicarboxylate symporter family L3404_RS01205 PF00209 Sodium:neurotransmitter symporter family L3404_RS01230 PF00550 Phosphopantetheine attachment site L3404_RS01240 PF00698 Acyl transferase domain L3404_RS01245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L3404_RS01245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L3404_RS01250 PF13662 Toprim domain L3404_RS01255 PF07244 Surface antigen variable number repeat L3404_RS01255 PF01103 Surface antigen L3404_RS01260 PF03938 Outer membrane protein (OmpH-like) L3404_RS01265 PF14602 Hexapeptide repeat of succinyl-transferase L3404_RS01265 PF00132 Bacterial transferase hexapeptide (six repeats) L3404_RS01265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD L3404_RS01275 PF00676 Dehydrogenase E1 component L3404_RS01280 PF02780 Transketolase, C-terminal domain L3404_RS01280 PF02779 Transketolase, pyrimidine binding domain L3404_RS01280 PF00364 Biotin-requiring enzyme L3404_RS01285 PF02817 e3 binding domain L3404_RS01285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L3404_RS01285 PF00364 Biotin-requiring enzyme L3404_RS01290 PF00343 Carbohydrate phosphorylase L3404_RS01300 PF08299 Bacterial dnaA protein helix-turn-helix L3404_RS01300 PF00308 Bacterial dnaA protein L3404_RS01305 PF02096 60Kd inner membrane protein L3404_RS01310 PF01790 Prolipoprotein diacylglyceryl transferase L3404_RS01320 PF02517 CPBP intramembrane metalloprotease L3404_RS01330 PF01595 Cyclin M transmembrane N-terminal domain L3404_RS01330 PF00571 CBS domain L3404_RS01330 PF03471 Transporter associated domain L3404_RS01340 PF00266 Aminotransferase class-V L3404_RS01355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain L3404_RS01355 PF11490 DNA polymerase III polC-type N-terminus II L3404_RS01355 PF14579 Helix-hairpin-helix motif L3404_RS01355 PF07733 Bacterial DNA polymerase III alpha NTPase domain L3404_RS01355 PF02811 PHP domain L3404_RS01355 PF00929 Exonuclease L3404_RS01360 PF02621 Menaquinone biosynthesis L3404_RS01370 PF00664 ABC transporter transmembrane region L3404_RS01370 PF00005 ABC transporter L3404_RS01375 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit L3404_RS01385 PF00216 Bacterial DNA-binding protein L3404_RS01390 PF08239 Bacterial SH3 domain L3404_RS01390 PF01520 N-acetylmuramoyl-L-alanine amidase L3404_RS01395 PF08245 Mur ligase middle domain L3404_RS01395 PF02875 Mur ligase family, glutamate ligase domain L3404_RS01400 PF03717 Penicillin-binding Protein dimerisation domain L3404_RS01400 PF00905 Penicillin binding protein transpeptidase domain L3404_RS01410 PF01795 MraW methylase family L3404_RS01415 PF17377 Family of unknown function (DUF5399) L3404_RS01425 PF00308 Bacterial dnaA protein L3404_RS01425 PF08299 Bacterial dnaA protein helix-turn-helix L3404_RS01425 PF11638 DnaA N-terminal domain L3404_RS01440 PF03116 NQR2, RnfD, RnfE family L3404_RS01445 PF04205 FMN-binding domain L3404_RS01450 PF02508 Rnf-Nqr subunit, membrane protein L3404_RS01455 PF02508 Rnf-Nqr subunit, membrane protein L3404_RS01460 PF01597 Glycine cleavage H-protein L3404_RS01470 PF13091 PLD-like domain L3404_RS01480 PF07724 AAA domain (Cdc48 subfamily) L3404_RS01480 PF00004 ATPase family associated with various cellular activities (AAA) L3404_RS01480 PF17871 AAA lid domain L3404_RS01480 PF10431 C-terminal, D2-small domain, of ClpB protein L3404_RS01480 PF02861 Clp amino terminal domain, pathogenicity island component L3404_RS01500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L3404_RS01505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L3404_RS01510 PF00692 dUTPase L3404_RS01515 PF01039 Carboxyl transferase domain L3404_RS01515 PF17848 Acetyl-coA carboxylase zinc finger domain L3404_RS01520 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L3404_RS01520 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L3404_RS01525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L3404_RS01525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L3404_RS01525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L3404_RS01525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L3404_RS01535 PF00035 Double-stranded RNA binding motif L3404_RS01535 PF14622 Ribonuclease-III-like L3404_RS01540 PF05362 Lon protease (S16) C-terminal proteolytic domain L3404_RS01540 PF18073 Rubredoxin metal binding domain L3404_RS01545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain L3404_RS01555 PF00069 Protein kinase domain L3404_RS01560 PF00133 tRNA synthetases class I (I, L, M and V) L3404_RS01560 PF08264 Anticodon-binding domain of tRNA L3404_RS01560 PF10458 Valyl tRNA synthetase tRNA binding arm L3404_RS01580 PF01813 ATP synthase subunit D L3404_RS01585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3404_RS01585 PF02874 ATP synthase alpha/beta family, beta-barrel domain L3404_RS01590 PF02874 ATP synthase alpha/beta family, beta-barrel domain L3404_RS01590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3404_RS01590 PF16886 ATPsynthase alpha/beta subunit N-term extension L3404_RS01595 PF10962 Protein of unknown function (DUF2764) L3404_RS01600 PF06188 HrpE/YscL/FliH and V-type ATPase subunit E L3404_RS01615 PF00923 Transaldolase/Fructose-6-phosphate aldolase L3404_RS01620 PF00623 RNA polymerase Rpb1, domain 2 L3404_RS01620 PF04983 RNA polymerase Rpb1, domain 3 L3404_RS01620 PF05000 RNA polymerase Rpb1, domain 4 L3404_RS01620 PF04997 RNA polymerase Rpb1, domain 1 L3404_RS01620 PF04998 RNA polymerase Rpb1, domain 5 L3404_RS01625 PF04561 RNA polymerase Rpb2, domain 2 L3404_RS01625 PF04565 RNA polymerase Rpb2, domain 3 L3404_RS01625 PF10385 RNA polymerase beta subunit external 1 domain L3404_RS01625 PF00562 RNA polymerase Rpb2, domain 6 L3404_RS01625 PF04563 RNA polymerase beta subunit L3404_RS01625 PF04560 RNA polymerase Rpb2, domain 7 L3404_RS01630 PF00542 Ribosomal protein L7/L12 C-terminal domain L3404_RS01630 PF16320 Ribosomal protein L7/L12 dimerisation domain L3404_RS01635 PF00466 Ribosomal protein L10 L3404_RS01640 PF00687 Ribosomal protein L1p/L10e family L3404_RS01645 PF03946 Ribosomal protein L11, N-terminal domain L3404_RS01645 PF00298 Ribosomal protein L11, RNA binding domain L3404_RS01650 PF02357 Transcription termination factor nusG L3404_RS01665 PF03144 Elongation factor Tu domain 2 L3404_RS01665 PF00009 Elongation factor Tu GTP binding domain L3404_RS01665 PF03143 Elongation factor Tu C-terminal domain L3404_RS01675 PF01176 Translation initiation factor 1A / IF-1 L3404_RS01685 PF02657 Fe-S metabolism associated domain L3404_RS01710 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase L3404_RS01715 PF00121 Triosephosphate isomerase L3404_RS01720 PF13742 OB-fold nucleic acid binding domain L3404_RS01720 PF02601 Exonuclease VII, large subunit L3404_RS01725 PF02609 Exonuclease VII small subunit L3404_RS01735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase L3404_RS01735 PF02779 Transketolase, pyrimidine binding domain L3404_RS01735 PF02780 Transketolase, C-terminal domain L3404_RS01740 PF02887 Pyruvate kinase, alpha/beta domain L3404_RS01740 PF00224 Pyruvate kinase, barrel domain L3404_RS01745 PF17760 UvrA interaction domain L3404_RS01745 PF17755 UvrA DNA-binding domain L3404_RS01750 PF12169 DNA polymerase III subunits gamma and tau domain III L3404_RS01755 PF02575 YbaB/EbfC DNA-binding family L3404_RS01760 PF05524 PEP-utilising enzyme, N-terminal L3404_RS01760 PF00391 PEP-utilising enzyme, mobile domain L3404_RS01760 PF02896 PEP-utilising enzyme, TIM barrel domain L3404_RS01765 PF00381 PTS HPr component phosphorylation site L3404_RS01785 PF02779 Transketolase, pyrimidine binding domain L3404_RS01785 PF02780 Transketolase, C-terminal domain L3404_RS01790 PF00684 DnaJ central domain L3404_RS01790 PF00226 DnaJ domain L3404_RS01790 PF01556 DnaJ C terminal domain L3404_RS01795 PF01165 Ribosomal protein S21 L3404_RS01800 PF00814 Glycoprotease family L3404_RS01805 PF00004 ATPase family associated with various cellular activities (AAA) L3404_RS01805 PF05362 Lon protease (S16) C-terminal proteolytic domain L3404_RS01805 PF02190 ATP-dependent protease La (LON) substrate-binding domain L3404_RS01815 PF00753 Metallo-beta-lactamase superfamily L3404_RS01820 PF02899 Phage integrase, N-terminal SAM-like domain L3404_RS01820 PF00589 Phage integrase family L3404_RS01825 PF12848 ABC transporter L3404_RS01825 PF00005 ABC transporter L3404_RS01830 PF02545 Maf-like protein L3404_RS01850 PF01327 Polypeptide deformylase L3404_RS01855 PF00398 Ribosomal RNA adenine dimethylase L3404_RS01865 PF03190 Protein of unknown function, DUF255 L3404_RS01900 PF00701 Dihydrodipicolinate synthetase family L3404_RS01905 PF00696 Amino acid kinase family L3404_RS01910 PF02774 Semialdehyde dehydrogenase, dimerisation domain L3404_RS01910 PF01118 Semialdehyde dehydrogenase, NAD binding domain L3404_RS01915 PF05173 Dihydrodipicolinate reductase, C-terminus L3404_RS01915 PF01113 Dihydrodipicolinate reductase, N-terminus L3404_RS01925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L3404_RS01930 PF01202 Shikimate kinase L3404_RS01935 PF01264 Chorismate synthase L3404_RS01940 PF01761 3-dehydroquinate synthase L3404_RS01945 PF01488 Shikimate / quinate 5-dehydrogenase L3404_RS01945 PF01487 Type I 3-dehydroquinase L3404_RS01945 PF08501 Shikimate dehydrogenase substrate binding domain L3404_RS01950 PF11019 Protein of unknown function (DUF2608) L3404_RS01955 PF04966 Carbohydrate-selective porin, OprB family L3404_RS01960 PF01862 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) L3404_RS01965 PF13520 Amino acid permease L3404_RS01970 PF05430 S-adenosyl-L-methionine-dependent methyltransferase L3404_RS01970 PF01266 FAD dependent oxidoreductase L3404_RS01975 PF00056 lactate/malate dehydrogenase, NAD binding domain L3404_RS01975 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain L3404_RS01980 PF17446 Late transcription unit A L3404_RS01985 PF00342 Phosphoglucose isomerase L3404_RS01990 PF16360 GTP-binding GTPase Middle Region L3404_RS01990 PF13167 GTP-binding GTPase N-terminal L3404_RS01990 PF01926 50S ribosome-binding GTPase L3404_RS01995 PF12706 Beta-lactamase superfamily domain L3404_RS01995 PF03099 Biotin/lipoate A/B protein ligase family L3404_RS02000 PF00497 Bacterial extracellular solute-binding proteins, family 3 L3404_RS02005 PF01817 Chorismate mutase type II L3404_RS02005 PF00793 DAHP synthetase I family L3404_RS02025 PF01230 HIT domain L3404_RS02030 PF03690 Uncharacterised protein family (UPF0160) L3404_RS02040 PF02594 Uncharacterised ACR, YggU family COG1872 L3404_RS02050 PF00155 Aminotransferase class I and II L3404_RS02065 PF03129 Anticodon binding domain L3404_RS02065 PF04073 Aminoacyl-tRNA editing domain L3404_RS02065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L3404_RS02070 PF01628 HrcA protein C terminal domain L3404_RS02075 PF01025 GrpE L3404_RS02080 PF00012 Hsp70 protein L3404_RS02085 PF00773 RNB domain L3404_RS02085 PF08206 Ribonuclease B OB domain L3404_RS02095 PF00571 CBS domain L3404_RS02095 PF01380 SIS domain L3404_RS02100 PF00364 Biotin-requiring enzyme L3404_RS02100 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L3404_RS02100 PF02817 e3 binding domain L3404_RS02105 PF00375 Sodium:dicarboxylate symporter family L3404_RS02110 PF02606 Tetraacyldisaccharide-1-P 4'-kinase L3404_RS02115 PF08032 RNA 2'-O ribose methyltransferase substrate binding L3404_RS02115 PF00588 SpoU rRNA Methylase family L3404_RS02120 PF17785 PUA-like domain L3404_RS02120 PF10672 S-adenosylmethionine-dependent methyltransferase L3404_RS02125 PF00677 Lumazine binding domain L3404_RS02130 PF03477 ATP cone domain L3404_RS02135 PF01258 Prokaryotic dksA/traR C4-type zinc finger L3404_RS02140 PF01252 Signal peptidase (SPase) II L3404_RS02145 PF01235 Sodium:alanine symporter family L3404_RS02150 PF12627 Probable RNA and SrmB- binding site of polymerase A L3404_RS02150 PF12626 Polymerase A arginine-rich C-terminus L3404_RS02150 PF01743 Poly A polymerase head domain L3404_RS02155 PF07578 Lipid A Biosynthesis N-terminal domain L3404_RS02155 PF02684 Lipid-A-disaccharide synthetase L3404_RS02160 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS02160 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS02165 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS02165 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS02165 PF03797 Autotransporter beta-domain L3404_RS02170 PF03797 Autotransporter beta-domain L3404_RS02170 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS02170 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS02180 PF01297 Zinc-uptake complex component A periplasmic L3404_RS02185 PF00005 ABC transporter L3404_RS02190 PF00950 ABC 3 transport family L3404_RS02195 PF01018 GTP1/OBG L3404_RS02195 PF01926 50S ribosome-binding GTPase L3404_RS02200 PF01016 Ribosomal L27 protein L3404_RS02205 PF00829 Ribosomal prokaryotic L21 protein L3404_RS02230 PF02130 Uncharacterized protein family UPF0054 L3404_RS02235 PF03471 Transporter associated domain L3404_RS02235 PF00571 CBS domain L3404_RS02240 PF01740 STAS domain L3404_RS02245 PF12228 Protein of unknown function (DUF3604) L3404_RS02250 PF04055 Radical SAM superfamily L3404_RS02260 PF01209 ubiE/COQ5 methyltransferase family L3404_RS02265 PF03682 Uncharacterised protein family (UPF0158) L3404_RS02270 PF01678 Diaminopimelate epimerase L3404_RS02275 PF00574 Clp protease L3404_RS02280 PF00464 Serine hydroxymethyltransferase L3404_RS02290 PF02542 YgbB family L3404_RS02295 PF00258 Flavodoxin L3404_RS02295 PF00175 Oxidoreductase NAD-binding domain L3404_RS02295 PF00667 FAD binding domain L3404_RS02300 PF00338 Ribosomal protein S10p/S20e L3404_RS02305 PF03764 Elongation factor G, domain IV L3404_RS02305 PF14492 Elongation Factor G, domain II L3404_RS02305 PF00009 Elongation factor Tu GTP binding domain L3404_RS02305 PF00679 Elongation factor G C-terminus L3404_RS02305 PF03144 Elongation factor Tu domain 2 L3404_RS02310 PF00177 Ribosomal protein S7p/S5e L3404_RS02315 PF00164 Ribosomal protein S12/S23 L3404_RS02325 PF03572 Peptidase family S41 L3404_RS02325 PF17804 Tail specific protease N-terminal domain L3404_RS02325 PF11818 C-terminal domain of tail specific protease (DUF3340) L3404_RS02325 PF00595 PDZ domain L3404_RS02330 PF05745 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) L3404_RS02335 PF01345 Domain of unknown function DUF11 L3404_RS02335 PF03504 Chlamydia cysteine-rich outer membrane protein 6 L3404_RS02340 PF03503 Chlamydia cysteine-rich outer membrane protein 3 L3404_RS02350 PF00749 tRNA synthetases class I (E and Q), catalytic domain L3404_RS02355 PF12728 Helix-turn-helix domain L3404_RS02360 PF01368 DHH family L3404_RS02360 PF02272 DHHA1 domain L3404_RS02360 PF17768 RecJ OB domain L3404_RS02365 PF07549 SecD/SecF GG Motif L3404_RS02365 PF02355 Protein export membrane protein L3404_RS02380 PF01255 Putative undecaprenyl diphosphate synthase L3404_RS02390 PF02224 Cytidylate kinase L3404_RS02395 PF01553 Acyltransferase L3404_RS02395 PF00501 AMP-binding enzyme L3404_RS02400 PF05746 DALR anticodon binding domain L3404_RS02400 PF00750 tRNA synthetases class I (R) L3404_RS02400 PF03485 Arginyl tRNA synthetase N terminal domain L3404_RS02405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L3404_RS02410 PF07577 Domain of Unknown Function (DUF1547) L3404_RS02415 PF01709 Transcriptional regulator L3404_RS02420 PF00583 Acetyltransferase (GNAT) family L3404_RS02425 PF03462 PCRF domain L3404_RS02425 PF00472 RF-1 domain L3404_RS02435 PF00149 Calcineurin-like phosphoesterase L3404_RS02440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase L3404_RS02445 PF01416 tRNA pseudouridine synthase L3404_RS02450 PF13419 Haloacid dehalogenase-like hydrolase L3404_RS02470 PF00512 His Kinase A (phospho-acceptor) domain L3404_RS02470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L3404_RS02475 PF00072 Response regulator receiver domain L3404_RS02475 PF02954 Bacterial regulatory protein, Fis family L3404_RS02475 PF00158 Sigma-54 interaction domain L3404_RS02490 PF02565 Recombination protein O C terminal L3404_RS02515 PF01809 Putative membrane protein insertion efficiency factor L3404_RS02525 PF03483 B3/4 domain L3404_RS02525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain L3404_RS02525 PF01588 Putative tRNA binding domain L3404_RS02525 PF03147 Ferredoxin-fold anticodon binding domain L3404_RS02525 PF03484 tRNA synthetase B5 domain L3404_RS02540 PF12911 N-terminal TM domain of oligopeptide transport permease C L3404_RS02540 PF00528 Binding-protein-dependent transport system inner membrane component L3404_RS02545 PF00528 Binding-protein-dependent transport system inner membrane component L3404_RS02580 PF00762 Ferrochelatase L3404_RS02600 PF00483 Nucleotidyl transferase L3404_RS02610 PF07497 Rho termination factor, RNA-binding domain L3404_RS02610 PF07498 Rho termination factor, N-terminal domain L3404_RS02610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3404_RS02615 PF01121 Dephospho-CoA kinase L3404_RS02620 PF00476 DNA polymerase family A L3404_RS02620 PF01367 5'-3' exonuclease, C-terminal SAM fold L3404_RS02620 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain L3404_RS02625 PF01343 Peptidase family S49 L3404_RS02630 PF03219 TLC ATP/ADP transporter L3404_RS02635 PF01066 CDP-alcohol phosphatidyltransferase L3404_RS02650 PF03796 DnaB-like helicase C terminal domain L3404_RS02650 PF00772 DnaB-like helicase N terminal domain L3404_RS02655 PF13932 GidA associated domain L3404_RS02655 PF01134 Glucose inhibited division protein A L3404_RS02660 PF03099 Biotin/lipoate A/B protein ligase family L3404_RS02660 PF10437 Bacterial lipoate protein ligase C-terminus L3404_RS02665 PF00334 Nucleoside diphosphate kinase L3404_RS02670 PF01330 RuvA N terminal domain L3404_RS02675 PF02075 Crossover junction endodeoxyribonuclease RuvC L3404_RS02695 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L3404_RS02695 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L3404_RS02700 PF01196 Ribosomal protein L17 L3404_RS02705 PF01000 RNA polymerase Rpb3/RpoA insert domain L3404_RS02705 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain L3404_RS02705 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain L3404_RS02710 PF00411 Ribosomal protein S11 L3404_RS02715 PF00416 Ribosomal protein S13/S18 L3404_RS02720 PF00344 SecY translocase L3404_RS02725 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A L3404_RS02730 PF00333 Ribosomal protein S5, N-terminal domain L3404_RS02730 PF03719 Ribosomal protein S5, C-terminal domain L3404_RS02735 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast L3404_RS02740 PF00347 Ribosomal protein L6 L3404_RS02745 PF00410 Ribosomal protein S8 L3404_RS02750 PF00281 Ribosomal protein L5 L3404_RS02750 PF00673 ribosomal L5P family C-terminus L3404_RS02755 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 L3404_RS02755 PF00467 KOW motif L3404_RS02760 PF00238 Ribosomal protein L14p/L23e L3404_RS02765 PF00366 Ribosomal protein S17 L3404_RS02770 PF00831 Ribosomal L29 protein L3404_RS02775 PF00252 Ribosomal protein L16p/L10e L3404_RS02780 PF00189 Ribosomal protein S3, C-terminal domain L3404_RS02780 PF07650 KH domain L3404_RS02785 PF00237 Ribosomal protein L22p/L17e L3404_RS02790 PF00203 Ribosomal protein S19 L3404_RS02795 PF00181 Ribosomal Proteins L2, RNA binding domain L3404_RS02795 PF03947 Ribosomal Proteins L2, C-terminal domain L3404_RS02800 PF00276 Ribosomal protein L23 L3404_RS02805 PF00573 Ribosomal protein L4/L1 family L3404_RS02810 PF00297 Ribosomal protein L3 L3404_RS02820 PF02911 Formyl transferase, C-terminal domain L3404_RS02820 PF00551 Formyl transferase L3404_RS02825 PF00132 Bacterial transferase hexapeptide (six repeats) L3404_RS02825 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 L3404_RS02830 PF07977 FabA-like domain L3404_RS02835 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase L3404_RS02840 PF00795 Carbon-nitrogen hydrolase L3404_RS02845 PF03061 Thioesterase superfamily L3404_RS02850 PF00929 Exonuclease L3404_RS02855 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE L3404_RS02860 PF10915 Protein of unknown function (DUF2709) L3404_RS02870 PF00085 Thioredoxin L3404_RS02875 PF00588 SpoU rRNA Methylase family L3404_RS02880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase L3404_RS02880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L3404_RS02885 PF02938 GAD domain L3404_RS02885 PF01336 OB-fold nucleic acid binding domain L3404_RS02885 PF00152 tRNA synthetases class II (D, K and N) L3404_RS02890 PF13393 Histidyl-tRNA synthetase L3404_RS02890 PF03129 Anticodon binding domain L3404_RS02895 PF07690 Major Facilitator Superfamily L3404_RS02900 PF02811 PHP domain L3404_RS02900 PF14579 Helix-hairpin-helix motif L3404_RS02900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain L3404_RS02900 PF07733 Bacterial DNA polymerase III alpha NTPase domain L3404_RS02930 PF00768 D-alanyl-D-alanine carboxypeptidase L3404_RS02930 PF07943 Penicillin-binding protein 5, C-terminal domain L3404_RS02940 PF01189 16S rRNA methyltransferase RsmB/F L3404_RS02940 PF01029 NusB family L3404_RS02945 PF05525 Branched-chain amino acid transport protein L3404_RS02950 PF00176 SNF2 family N-terminal domain L3404_RS02950 PF00271 Helicase conserved C-terminal domain L3404_RS02950 PF04434 SWIM zinc finger L3404_RS02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase L3404_RS02960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L3404_RS02965 PF04055 Radical SAM superfamily L3404_RS02965 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family L3404_RS02970 PF01514 Secretory protein of YscJ/FliF family L3404_RS02985 PF02108 Flagellar assembly protein FliH L3404_RS02990 PF00813 FliP family L3404_RS02995 PF01313 Bacterial export proteins, family 3 L3404_RS03000 PF01311 Bacterial export proteins, family 1 L3404_RS03025 PF07963 Prokaryotic N-terminal methylation motif L3404_RS03030 PF00482 Type II secretion system (T2SS), protein F L3404_RS03035 PF00437 Type II/IV secretion system protein L3404_RS03040 PF07660 Secretin and TonB N terminus short domain L3404_RS03040 PF03958 Bacterial type II/III secretion system short domain L3404_RS03040 PF11741 AMIN domain L3404_RS03040 PF00263 Bacterial type II and III secretion system protein L3404_RS03050 PF01321 Creatinase/Prolidase N-terminal domain L3404_RS03050 PF00557 Metallopeptidase family M24 L3404_RS03055 PF08676 MutL C terminal dimerisation domain L3404_RS03055 PF01119 DNA mismatch repair protein, C-terminal domain L3404_RS03075 PF04888 Secretion system effector C (SseC) like family L3404_RS03080 PF00892 EamA-like transporter family L3404_RS03090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L3404_RS03090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L3404_RS03090 PF03129 Anticodon binding domain L3404_RS03090 PF02824 TGS domain L3404_RS03095 PF13614 AAA domain L3404_RS03100 PF03677 Uncharacterised protein family (UPF0137) L3404_RS03105 PF17435 Family of unknown function (DUF5414) L3404_RS03110 PF00579 tRNA synthetases class I (W and Y) L3404_RS03115 PF12344 Ultra-violet resistance protein B L3404_RS03115 PF02151 UvrB/uvrC motif L3404_RS03115 PF04851 Type III restriction enzyme, res subunit L3404_RS03115 PF00271 Helicase conserved C-terminal domain L3404_RS03115 PF17757 UvrB interaction domain L3404_RS03120 PF03952 Enolase, N-terminal domain L3404_RS03120 PF00113 Enolase, C-terminal TIM barrel domain L3404_RS03140 PF13183 4Fe-4S dicluster domain L3404_RS03140 PF13085 2Fe-2S iron-sulfur cluster binding domain L3404_RS03145 PF00890 FAD binding domain L3404_RS03145 PF02910 Fumarate reductase flavoprotein C-term L3404_RS03160 PF01026 TatD related DNase L3404_RS03170 PF01618 MotA/TolQ/ExbB proton channel family L3404_RS03175 PF02472 Biopolymer transport protein ExbD/TolR L3404_RS03185 PF07676 WD40-like Beta Propeller Repeat L3404_RS03190 PF00691 OmpA family L3404_RS03195 PF01476 LysM domain L3404_RS03205 PF00578 AhpC/TSA family L3404_RS03205 PF10417 C-terminal domain of 1-Cys peroxiredoxin L3404_RS03215 PF00118 TCP-1/cpn60 chaperonin family L3404_RS03220 PF07075 Protein of unknown function (DUF1343) L3404_RS03225 PF01725 Ham1 family L3404_RS03235 PF03167 Uracil DNA glycosylase superfamily L3404_RS03240 PF13361 UvrD-like helicase C-terminal domain L3404_RS03240 PF00580 UvrD/REP helicase N-terminal domain L3404_RS03245 PF04552 Sigma-54, DNA binding domain L3404_RS03245 PF04963 Sigma-54 factor, core binding domain L3404_RS03245 PF00309 Sigma-54 factor, Activator interacting domain (AID) L3404_RS03250 PF03070 TENA/THI-4/PQQC family L3404_RS03255 PF00881 Nitroreductase family L3404_RS03255 PF01996 F420-0:Gamma-glutamyl ligase L3404_RS03260 PF00186 Dihydrofolate reductase L3404_RS03265 PF00809 Pterin binding enzyme L3404_RS03265 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) L3404_RS03270 PF02152 Dihydroneopterin aldolase L3404_RS03275 PF04539 Sigma-70 region 3 L3404_RS03275 PF04542 Sigma-70 region 2 L3404_RS03275 PF03979 Sigma-70 factor, region 1.1 L3404_RS03275 PF00140 Sigma-70 factor, region 1.2 L3404_RS03275 PF04545 Sigma-70, region 4 L3404_RS03280 PF18095 UPF0242 C-terminal PAS-like domain L3404_RS03280 PF06785 Uncharacterised protein family (UPF0242) N-terminus L3404_RS03290 PF01649 Ribosomal protein S20 L3404_RS03330 PF03023 Lipid II flippase MurJ L3404_RS03335 PF01261 Xylose isomerase-like TIM barrel L3404_RS03340 PF01479 S4 domain L3404_RS03340 PF00163 Ribosomal protein S4/S9 N-terminal domain L3404_RS03345 PF12368 Rhodanase C-terminal L3404_RS03345 PF17773 UPF0176 acylphosphatase like domain L3404_RS03345 PF00581 Rhodanese-like domain L3404_RS03350 PF00348 Polyprenyl synthetase L3404_RS03355 PF00132 Bacterial transferase hexapeptide (six repeats) L3404_RS03355 PF12804 MobA-like NTP transferase domain L3404_RS03360 PF00486 Transcriptional regulatory protein, C terminal L3404_RS03375 PF02511 Thymidylate synthase complementing protein L3404_RS03380 PF00490 Delta-aminolevulinic acid dehydratase L3404_RS03385 PF11973 NQRA C-terminal domain L3404_RS03385 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) L3404_RS03395 PF01272 Transcription elongation factor, GreA/GreB, C-term L3404_RS03395 PF03449 Transcription elongation factor, N-terminal L3404_RS03405 PF00155 Aminotransferase class I and II L3404_RS03415 PF00580 UvrD/REP helicase N-terminal domain L3404_RS03415 PF13361 UvrD-like helicase C-terminal domain L3404_RS03435 PF01751 Toprim domain L3404_RS03435 PF01396 Topoisomerase DNA binding C4 zinc finger L3404_RS03435 PF01131 DNA topoisomerase L3404_RS03440 PF01207 Dihydrouridine synthase (Dus) L3404_RS03465 PF01812 5-formyltetrahydrofolate cyclo-ligase family L3404_RS03470 PF00154 recA bacterial DNA recombination protein L3404_RS03480 PF13538 UvrD-like helicase C-terminal domain L3404_RS03490 PF00005 ABC transporter L3404_RS03500 PF00793 DAHP synthetase I family L3404_RS03520 PF01479 S4 domain L3404_RS03520 PF00849 RNA pseudouridylate synthase L3404_RS03530 PF00521 DNA gyrase/topoisomerase IV, subunit A L3404_RS03535 PF00986 DNA gyrase B subunit, carboxyl terminus L3404_RS03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L3404_RS03535 PF01751 Toprim domain L3404_RS03535 PF00204 DNA gyrase B L3404_RS03540 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain L3404_RS03545 PF05932 Tir chaperone protein (CesT) family L3404_RS03555 PF17376 Family of unknown function (DUF5398) L3404_RS03560 PF17401 Family of unknown function (DUF5407) L3404_RS03575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3404_RS03575 PF18269 T3SS EscN ATPase C-terminal domain L3404_RS03575 PF02874 ATP synthase alpha/beta family, beta-barrel domain L3404_RS03585 PF17458 Family of unknown function (DUF5421) L3404_RS03595 PF03793 PASTA domain L3404_RS03595 PF00069 Protein kinase domain L3404_RS03600 PF00263 Bacterial type II and III secretion system protein L3404_RS03600 PF03958 Bacterial type II/III secretion system short domain L3404_RS03610 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain L3404_RS03630 PF01765 Ribosome recycling factor L3404_RS03635 PF00696 Amino acid kinase family L3404_RS03640 PF00889 Elongation factor TS L3404_RS03645 PF00318 Ribosomal protein S2 L3404_RS03655 PF01308 Chlamydia major outer membrane protein L3404_RS03660 PF03717 Penicillin-binding Protein dimerisation domain L3404_RS03660 PF00905 Penicillin binding protein transpeptidase domain L3404_RS03670 PF01458 Uncharacterized protein family (UPF0051) L3404_RS03675 PF00005 ABC transporter L3404_RS03680 PF01458 Uncharacterized protein family (UPF0051) L3404_RS03685 PF00266 Aminotransferase class-V L3404_RS03690 PF17762 HTH domain found in ParB protein L3404_RS03690 PF02195 ParB-like nuclease domain L3404_RS03695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L3404_RS03695 PF00005 ABC transporter L3404_RS03700 PF00005 ABC transporter L3404_RS03700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L3404_RS03705 PF01865 Protein of unknown function DUF47 L3404_RS03710 PF01384 Phosphate transporter family L3404_RS03715 PF00162 Phosphoglycerate kinase L3404_RS03735 PF10576 Iron-sulfur binding domain of endonuclease III L3404_RS03735 PF00633 Helix-hairpin-helix motif L3404_RS03735 PF00730 HhH-GPD superfamily base excision DNA repair protein L3404_RS03740 PF12631 MnmE helical domain L3404_RS03740 PF10396 GTP-binding protein TrmE N-terminus L3404_RS03740 PF01926 50S ribosome-binding GTPase L3404_RS03745 PF02666 Phosphatidylserine decarboxylase L3404_RS03755 PF07517 SecA DEAD-like domain L3404_RS03755 PF01043 SecA preprotein cross-linking domain L3404_RS03755 PF07516 SecA Wing and Scaffold domain L3404_RS03765 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal L3404_RS03765 PF01926 50S ribosome-binding GTPase L3404_RS03770 PF13735 tRNA nucleotidyltransferase domain 2 putative L3404_RS03770 PF12627 Probable RNA and SrmB- binding site of polymerase A L3404_RS03770 PF01743 Poly A polymerase head domain L3404_RS03775 PF07724 AAA domain (Cdc48 subfamily) L3404_RS03775 PF06689 ClpX C4-type zinc finger L3404_RS03775 PF10431 C-terminal, D2-small domain, of ClpB protein L3404_RS03780 PF00574 Clp protease L3404_RS03785 PF05697 Bacterial trigger factor protein (TF) L3404_RS03785 PF05698 Bacterial trigger factor protein (TF) C-terminus L3404_RS03800 PF00271 Helicase conserved C-terminal domain L3404_RS03800 PF04434 SWIM zinc finger L3404_RS03800 PF00176 SNF2 family N-terminal domain L3404_RS03810 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain L3404_RS03810 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain L3404_RS03825 PF01308 Chlamydia major outer membrane protein L3404_RS03830 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus L3404_RS03830 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus L3404_RS03835 PF01704 UTP--glucose-1-phosphate uridylyltransferase L3404_RS03845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L3404_RS03845 PF02874 ATP synthase alpha/beta family, beta-barrel domain L3404_RS03845 PF18269 T3SS EscN ATPase C-terminal domain L3404_RS03865 PF00266 Aminotransferase class-V L3404_RS03870 PF00300 Histidine phosphatase superfamily (branch 1) L3404_RS03875 PF00849 RNA pseudouridylate synthase L3404_RS03875 PF01479 S4 domain L3404_RS03885 PF08279 HTH domain L3404_RS03885 PF03099 Biotin/lipoate A/B protein ligase family L3404_RS03885 PF02237 Biotin protein ligase C terminal domain L3404_RS03890 PF01098 Cell cycle protein L3404_RS03895 PF00403 Heavy-metal-associated domain L3404_RS03905 PF02403 Seryl-tRNA synthetase N-terminal domain L3404_RS03905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L3404_RS03910 PF01872 RibD C-terminal domain L3404_RS03910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region L3404_RS03915 PF00925 GTP cyclohydrolase II L3404_RS03915 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L3404_RS03920 PF00885 6,7-dimethyl-8-ribityllumazine synthase L3404_RS03935 PF01235 Sodium:alanine symporter family L3404_RS03940 PF01161 Phosphatidylethanolamine-binding protein L3404_RS03950 PF00753 Metallo-beta-lactamase superfamily L3404_RS03955 PF09397 Ftsk gamma domain L3404_RS03955 PF01580 FtsK/SpoIIIE family L3404_RS03955 PF17854 FtsK alpha domain L3404_RS03955 PF13491 4TM region of DNA translocase FtsK/SpoIIIE L3404_RS03985 PF00175 Oxidoreductase NAD-binding domain L3404_RS03985 PF00111 2Fe-2S iron-sulfur cluster binding domain L3404_RS03990 PF02699 Preprotein translocase subunit L3404_RS03995 PF05958 tRNA (Uracil-5-)-methyltransferase L3404_RS04000 PF07432 Histone H1-like protein Hc1 L3404_RS04010 PF01593 Flavin containing amine oxidoreductase L3404_RS04015 PF04055 Radical SAM superfamily L3404_RS04015 PF06969 HemN C-terminal domain L3404_RS04020 PF01208 Uroporphyrinogen decarboxylase (URO-D) L3404_RS04025 PF03461 TRCF domain L3404_RS04025 PF00270 DEAD/DEAH box helicase L3404_RS04025 PF02559 CarD-like/TRCF domain L3404_RS04025 PF00271 Helicase conserved C-terminal domain L3404_RS04025 PF17757 UvrB interaction domain L3404_RS04030 PF01411 tRNA synthetases class II (A) L3404_RS04030 PF02272 DHHA1 domain L3404_RS04030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L3404_RS04055 PF00456 Transketolase, thiamine diphosphate binding domain L3404_RS04055 PF02779 Transketolase, pyrimidine binding domain L3404_RS04055 PF02780 Transketolase, C-terminal domain L3404_RS04065 PF08207 Elongation factor P (EF-P) KOW-like domain L3404_RS04065 PF09285 Elongation factor P, C-terminal L3404_RS04065 PF01132 Elongation factor P (EF-P) OB domain L3404_RS04090 PF01225 Mur ligase family, catalytic domain L3404_RS04090 PF02875 Mur ligase family, glutamate ligase domain L3404_RS04090 PF08245 Mur ligase middle domain L3404_RS04095 PF00953 Glycosyl transferase family 4 L3404_RS04100 PF02875 Mur ligase family, glutamate ligase domain L3404_RS04100 PF08245 Mur ligase middle domain L3404_RS04110 PF01098 Cell cycle protein L3404_RS04115 PF04101 Glycosyltransferase family 28 C-terminal domain L3404_RS04115 PF03033 Glycosyltransferase family 28 N-terminal domain L3404_RS04120 PF01225 Mur ligase family, catalytic domain L3404_RS04120 PF08245 Mur ligase middle domain L3404_RS04120 PF02875 Mur ligase family, glutamate ligase domain L3404_RS04120 PF01820 D-ala D-ala ligase N-terminus L3404_RS04120 PF07478 D-ala D-ala ligase C-terminus L3404_RS04135 PF01740 STAS domain L3404_RS04145 PF04055 Radical SAM superfamily L3404_RS04160 PF00109 Beta-ketoacyl synthase, N-terminal domain L3404_RS04160 PF02801 Beta-ketoacyl synthase, C-terminal domain L3404_RS04165 PF00293 NUDIX domain L3404_RS04170 PF00719 Inorganic pyrophosphatase L3404_RS04175 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain L3404_RS04175 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase L3404_RS04180 PF00459 Inositol monophosphatase family L3404_RS04190 PF01553 Acyltransferase L3404_RS04190 PF00501 AMP-binding enzyme L3404_RS04195 PF00155 Aminotransferase class I and II L3404_RS04200 PF18074 Primosomal protein N C-terminal domain L3404_RS04200 PF04851 Type III restriction enzyme, res subunit L3404_RS04200 PF17764 3′ DNA-binding domain (3′BD) L3404_RS04200 PF18319 PriA DNA helicase Cys-rich region (CRR) domain L3404_RS04215 PF01336 OB-fold nucleic acid binding domain L3404_RS04215 PF00152 tRNA synthetases class II (D, K and N) L3404_RS04220 PF09190 DALR domain L3404_RS04220 PF01406 tRNA synthetases class I (C) catalytic domain L3404_RS04230 PF00825 Ribonuclease P L3404_RS04235 PF00468 Ribosomal protein L34 L3404_RS04240 PF00444 Ribosomal protein L36 L3404_RS04245 PF00253 Ribosomal protein S14p/S29e L3404_RS04265 PF08459 UvrC Helix-hairpin-helix N-terminal L3404_RS04265 PF01541 GIY-YIG catalytic domain L3404_RS04270 PF05188 MutS domain II L3404_RS04270 PF05190 MutS family domain IV L3404_RS04270 PF00488 MutS domain V L3404_RS04270 PF05192 MutS domain III L3404_RS04270 PF01624 MutS domain I L3404_RS04280 PF01807 CHC2 zinc finger L3404_RS04280 PF08275 DNA primase catalytic core, N-terminal domain L3404_RS04295 PF05746 DALR anticodon binding domain L3404_RS04295 PF02091 Glycyl-tRNA synthetase alpha subunit L3404_RS04295 PF02092 Glycyl-tRNA synthetase beta subunit L3404_RS04300 PF01066 CDP-alcohol phosphatidyltransferase L3404_RS04305 PF08323 Starch synthase catalytic domain L3404_RS04305 PF00534 Glycosyl transferases group 1 L3404_RS04315 PF14693 Ribosomal protein TL5, C-terminal domain L3404_RS04315 PF01386 Ribosomal L25p family L3404_RS04320 PF01195 Peptidyl-tRNA hydrolase L3404_RS04325 PF01250 Ribosomal protein S6 L3404_RS04330 PF01084 Ribosomal protein S18 L3404_RS04335 PF01281 Ribosomal protein L9, N-terminal domain L3404_RS04335 PF03948 Ribosomal protein L9, C-terminal domain L3404_RS04340 PF00288 GHMP kinases N terminal domain L3404_RS04355 PF05193 Peptidase M16 inactive domain L3404_RS04355 PF00675 Insulinase (Peptidase family M16) L3404_RS04365 PF00575 S1 RNA binding domain L3404_RS04365 PF10150 Ribonuclease E/G family L3404_RS04380 PF01783 Ribosomal L32p protein family L3404_RS04385 PF02504 Fatty acid synthesis protein L3404_RS04390 PF03797 Autotransporter beta-domain L3404_RS04390 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS04390 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS04410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L3404_RS04410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L3404_RS04410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L3404_RS04410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L3404_RS04415 PF01380 SIS domain L3404_RS04420 PF03222 Tryptophan/tyrosine permease family L3404_RS04425 PF03222 Tryptophan/tyrosine permease family L3404_RS04430 PF01027 Inhibitor of apoptosis-promoting Bax1 L3404_RS04435 PF00448 SRP54-type protein, GTPase domain L3404_RS04440 PF08442 ATP-grasp domain L3404_RS04440 PF00549 CoA-ligase L3404_RS04445 PF02629 CoA binding domain L3404_RS04445 PF00549 CoA-ligase L3404_RS04450 PF13180 PDZ domain L3404_RS04450 PF17820 PDZ domain L3404_RS04455 PF05193 Peptidase M16 inactive domain L3404_RS04455 PF00675 Insulinase (Peptidase family M16) L3404_RS04455 PF08367 Peptidase M16C associated L3404_RS04460 PF02646 RmuC family L3404_RS04465 PF01066 CDP-alcohol phosphatidyltransferase L3404_RS04470 PF00317 Ribonucleotide reductase, all-alpha domain L3404_RS04470 PF02867 Ribonucleotide reductase, barrel domain L3404_RS04470 PF03477 ATP cone domain L3404_RS04475 PF00268 Ribonucleotide reductase, small chain L3404_RS04485 PF06962 Putative rRNA methylase L3404_RS04490 PF01565 FAD binding domain L3404_RS04490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain L3404_RS04495 PF01029 NusB family L3404_RS04500 PF05198 Translation initiation factor IF-3, N-terminal domain L3404_RS04500 PF00707 Translation initiation factor IF-3, C-terminal domain L3404_RS04505 PF01632 Ribosomal protein L35 L3404_RS04510 PF00453 Ribosomal protein L20 L3404_RS04515 PF01409 tRNA synthetases class II core domain (F) L3404_RS04515 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain L3404_RS04540 PF01171 PP-loop family L3404_RS04545 PF00004 ATPase family associated with various cellular activities (AAA) L3404_RS04545 PF17862 AAA+ lid domain L3404_RS04545 PF01434 Peptidase family M41 L3404_RS04550 PF03725 3' exoribonuclease family, domain 2 L3404_RS04550 PF00575 S1 RNA binding domain L3404_RS04550 PF00013 KH domain L3404_RS04550 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain L3404_RS04550 PF01138 3' exoribonuclease family, domain 1 L3404_RS04555 PF00312 Ribosomal protein S15 L3404_RS04560 PF14437 MafB19-like deaminase L3404_RS04600 PF00557 Metallopeptidase family M24 L3404_RS04600 PF02810 SEC-C motif L3404_RS04605 PF01914 MarC family integral membrane protein L3404_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component L3404_RS04625 PF01740 STAS domain L3404_RS04625 PF00916 Sulfate permease family L3404_RS04640 PF03600 Citrate transporter L3404_RS04645 PF03572 Peptidase family S41 L3404_RS04645 PF17816 PDZ domain L3404_RS04650 PF02401 LytB protein L3404_RS04685 PF02899 Phage integrase, N-terminal SAM-like domain L3404_RS04685 PF00589 Phage integrase family L3404_RS04695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) L3404_RS04695 PF02806 Alpha amylase, C-terminal all-beta domain L3404_RS04695 PF00128 Alpha amylase, catalytic domain L3404_RS04700 PF02902 Ulp1 protease family, C-terminal catalytic domain L3404_RS04705 PF02902 Ulp1 protease family, C-terminal catalytic domain L3404_RS04710 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS04710 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS04710 PF03797 Autotransporter beta-domain L3404_RS04715 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS04715 PF03797 Autotransporter beta-domain L3404_RS04720 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS04720 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS04725 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS04725 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS04735 PF07548 Chlamydia polymorphic membrane protein middle domain L3404_RS04735 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat L3404_RS04775 PF02934 GatB/GatE catalytic domain L3404_RS04775 PF02637 GatB domain