L3404_RS00020	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
L3404_RS00140	PWY-6829	tRNA methylation (yeast)
L3404_RS00140	PWY-7285	methylwyosine biosynthesis
L3404_RS00140	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
L3404_RS00155	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS00205	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS00255	PWY-2201	folate transformations I
L3404_RS00285	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
L3404_RS00290	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
L3404_RS00375	PWY-7294	xylose degradation IV
L3404_RS00375	PWY-7295	L-arabinose degradation IV
L3404_RS00375	PWY-7560	methylerythritol phosphate pathway II
L3404_RS00410	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
L3404_RS00410	PWY-2201	folate transformations I
L3404_RS00410	PWY-3841	folate transformations II
L3404_RS00410	PWY-5030	L-histidine degradation III
L3404_RS00410	PWY-5497	purine nucleobases degradation II (anaerobic)
L3404_RS00410	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
L3404_RS00445	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
L3404_RS00445	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
L3404_RS00445	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
L3404_RS00445	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
L3404_RS00445	PWY-6978	plastoquinol-9 biosynthesis II
L3404_RS00455	PWY-5941	glycogen degradation II (eukaryotic)
L3404_RS00455	PWY-6724	starch degradation II
L3404_RS00455	PWY-6737	starch degradation V
L3404_RS00455	PWY-7238	sucrose biosynthesis II
L3404_RS00485	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
L3404_RS00485	PWY-6167	flavin biosynthesis II (archaea)
L3404_RS00485	PWY-6168	flavin biosynthesis III (fungi)
L3404_RS00520	PWY-6012	acyl carrier protein metabolism I
L3404_RS00520	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
L3404_RS00625	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
L3404_RS00625	PWY-5723	Rubisco shunt
L3404_RS00660	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS00710	PWY-7533	gliotoxin biosynthesis
L3404_RS00935	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
L3404_RS00940	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
L3404_RS00940	PWY-7177	UTP and CTP dephosphorylation II
L3404_RS00940	PWY-7185	UTP and CTP dephosphorylation I
L3404_RS00950	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
L3404_RS00955	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
L3404_RS00955	PWY-6855	chitin degradation I (archaea)
L3404_RS00955	PWY-6906	chitin derivatives degradation
L3404_RS00965	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
L3404_RS00965	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS00965	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS00965	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
L3404_RS00965	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
L3404_RS00965	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
L3404_RS00990	PWY-6700	queuosine biosynthesis
L3404_RS01010	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
L3404_RS01010	PWY-5368	dimorphecolate biosynthesis
L3404_RS01010	PWY-5995	linoleate biosynthesis I (plants)
L3404_RS01010	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
L3404_RS01010	PWY-6803	phosphatidylcholine acyl editing
L3404_RS01010	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
L3404_RS01010	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
L3404_RS01010	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
L3404_RS01010	PWY-7470	phosphatidylcholine biosynthesis VII
L3404_RS01010	PWY-7618	ricinoleate biosynthesis
L3404_RS01050	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS01050	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
L3404_RS01050	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS01050	PWY-7385	1,3-propanediol biosynthesis (engineered)
L3404_RS01060	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS01060	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
L3404_RS01060	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS01060	PWY-7385	1,3-propanediol biosynthesis (engineered)
L3404_RS01075	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
L3404_RS01085	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
L3404_RS01100	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
L3404_RS01100	PWY-5723	Rubisco shunt
L3404_RS01125	PWY-5381	pyridine nucleotide cycling (plants)
L3404_RS01125	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
L3404_RS01125	PWY-6596	adenosine nucleotides degradation I
L3404_RS01125	PWY-6606	guanosine nucleotides degradation II
L3404_RS01125	PWY-6607	guanosine nucleotides degradation I
L3404_RS01125	PWY-6608	guanosine nucleotides degradation III
L3404_RS01125	PWY-7185	UTP and CTP dephosphorylation I
L3404_RS01235	PWY-5367	petroselinate biosynthesis
L3404_RS01235	PWY-5515	L-arabinose degradation II
L3404_RS01235	PWY-5525	D-glucuronate degradation I
L3404_RS01235	PWY-5971	palmitate biosynthesis II (bacteria and plants)
L3404_RS01235	PWY-5973	<i>cis</i>-vaccenate biosynthesis
L3404_RS01235	PWY-5989	stearate biosynthesis II (bacteria and plants)
L3404_RS01235	PWY-5994	palmitate biosynthesis I (animals and fungi)
L3404_RS01235	PWY-6113	superpathway of mycolate biosynthesis
L3404_RS01235	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
L3404_RS01235	PWY-6519	8-amino-7-oxononanoate biosynthesis I
L3404_RS01235	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
L3404_RS01235	PWY-7663	gondoate biosynthesis (anaerobic)
L3404_RS01235	PWY-7664	oleate biosynthesis IV (anaerobic)
L3404_RS01235	PWYG-321	mycolate biosynthesis
L3404_RS01240	PWY-4381	fatty acid biosynthesis initiation I
L3404_RS01240	PWY-6799	fatty acid biosynthesis (plant mitochondria)
L3404_RS01240	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
L3404_RS01245	PWY-4381	fatty acid biosynthesis initiation I
L3404_RS01290	PWY-5941	glycogen degradation II (eukaryotic)
L3404_RS01290	PWY-6731	starch degradation III
L3404_RS01290	PWY-6737	starch degradation V
L3404_RS01290	PWY-7238	sucrose biosynthesis II
L3404_RS01340	PWY-6823	molybdenum cofactor biosynthesis
L3404_RS01340	PWY-6891	thiazole biosynthesis II (Bacillus)
L3404_RS01340	PWY-6892	thiazole biosynthesis I (E. coli)
L3404_RS01340	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
L3404_RS01375	PWY-4381	fatty acid biosynthesis initiation I
L3404_RS01375	PWY-5743	3-hydroxypropanoate cycle
L3404_RS01375	PWY-5744	glyoxylate assimilation
L3404_RS01375	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
L3404_RS01375	PWY-6679	jadomycin biosynthesis
L3404_RS01375	PWY-6722	candicidin biosynthesis
L3404_RS01375	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
L3404_RS01410	PWY-2201	folate transformations I
L3404_RS01510	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
L3404_RS01510	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS01510	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS01510	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
L3404_RS01515	PWY-4381	fatty acid biosynthesis initiation I
L3404_RS01515	PWY-5743	3-hydroxypropanoate cycle
L3404_RS01515	PWY-5744	glyoxylate assimilation
L3404_RS01515	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
L3404_RS01515	PWY-6679	jadomycin biosynthesis
L3404_RS01515	PWY-6722	candicidin biosynthesis
L3404_RS01515	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
L3404_RS01520	PWY-6854	ethylene biosynthesis III (microbes)
L3404_RS01525	PWY-6749	CMP-legionaminate biosynthesis I
L3404_RS01545	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
L3404_RS01545	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
L3404_RS01585	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS01590	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS01615	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
L3404_RS01615	PWY-5723	Rubisco shunt
L3404_RS01715	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS01715	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS01715	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
L3404_RS01715	PWY-7003	glycerol degradation to butanol
L3404_RS01735	PWY-6891	thiazole biosynthesis II (Bacillus)
L3404_RS01735	PWY-6892	thiazole biosynthesis I (E. coli)
L3404_RS01735	PWY-7560	methylerythritol phosphate pathway II
L3404_RS01740	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS01740	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
L3404_RS01740	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS01740	PWY-5723	Rubisco shunt
L3404_RS01740	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
L3404_RS01740	PWY-6886	1-butanol autotrophic biosynthesis
L3404_RS01740	PWY-6901	superpathway of glucose and xylose degradation
L3404_RS01740	PWY-7003	glycerol degradation to butanol
L3404_RS01740	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
L3404_RS01740	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
L3404_RS01800	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
L3404_RS01800	PWY-5368	dimorphecolate biosynthesis
L3404_RS01800	PWY-5995	linoleate biosynthesis I (plants)
L3404_RS01800	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
L3404_RS01800	PWY-6803	phosphatidylcholine acyl editing
L3404_RS01800	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
L3404_RS01800	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
L3404_RS01800	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
L3404_RS01800	PWY-7470	phosphatidylcholine biosynthesis VII
L3404_RS01800	PWY-7618	ricinoleate biosynthesis
L3404_RS01900	PWY-2941	L-lysine biosynthesis II
L3404_RS01900	PWY-2942	L-lysine biosynthesis III
L3404_RS01900	PWY-5097	L-lysine biosynthesis VI
L3404_RS01905	PWY-2941	L-lysine biosynthesis II
L3404_RS01905	PWY-2942	L-lysine biosynthesis III
L3404_RS01905	PWY-5097	L-lysine biosynthesis VI
L3404_RS01905	PWY-6559	spermidine biosynthesis II
L3404_RS01905	PWY-6562	norspermidine biosynthesis
L3404_RS01905	PWY-7153	grixazone biosynthesis
L3404_RS01910	PWY-2941	L-lysine biosynthesis II
L3404_RS01910	PWY-2942	L-lysine biosynthesis III
L3404_RS01910	PWY-5097	L-lysine biosynthesis VI
L3404_RS01910	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
L3404_RS01910	PWY-6559	spermidine biosynthesis II
L3404_RS01910	PWY-6562	norspermidine biosynthesis
L3404_RS01910	PWY-7153	grixazone biosynthesis
L3404_RS01910	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
L3404_RS01915	PWY-2941	L-lysine biosynthesis II
L3404_RS01915	PWY-2942	L-lysine biosynthesis III
L3404_RS01915	PWY-5097	L-lysine biosynthesis VI
L3404_RS01925	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
L3404_RS01930	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
L3404_RS01935	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
L3404_RS01940	PWY-6164	3-dehydroquinate biosynthesis I
L3404_RS01945	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
L3404_RS01945	PWY-6416	quinate degradation II
L3404_RS01945	PWY-6707	gallate biosynthesis
L3404_RS01960	PWY-40	putrescine biosynthesis I
L3404_RS01960	PWY-43	putrescine biosynthesis II
L3404_RS01960	PWY-6305	putrescine biosynthesis IV
L3404_RS01960	PWY-6834	spermidine biosynthesis III
L3404_RS01975	PWY-1622	formaldehyde assimilation I (serine pathway)
L3404_RS01975	PWY-5392	reductive TCA cycle II
L3404_RS01975	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
L3404_RS01975	PWY-5690	TCA cycle II (plants and fungi)
L3404_RS01975	PWY-5913	TCA cycle VI (obligate autotrophs)
L3404_RS01975	PWY-6728	methylaspartate cycle
L3404_RS01975	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
L3404_RS01975	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
L3404_RS01975	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
L3404_RS01985	PWY-3801	sucrose degradation II (sucrose synthase)
L3404_RS01985	PWY-5054	sorbitol biosynthesis I
L3404_RS01985	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
L3404_RS01985	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
L3404_RS01985	PWY-5659	GDP-mannose biosynthesis
L3404_RS01985	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
L3404_RS01985	PWY-621	sucrose degradation III (sucrose invertase)
L3404_RS01985	PWY-622	starch biosynthesis
L3404_RS01985	PWY-6981	chitin biosynthesis
L3404_RS01985	PWY-6992	1,5-anhydrofructose degradation
L3404_RS01985	PWY-7238	sucrose biosynthesis II
L3404_RS01985	PWY-7347	sucrose biosynthesis III
L3404_RS01985	PWY-7385	1,3-propanediol biosynthesis (engineered)
L3404_RS02005	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
L3404_RS02005	PWY-6164	3-dehydroquinate biosynthesis I
L3404_RS02005	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
L3404_RS02050	PWY-5097	L-lysine biosynthesis VI
L3404_RS02125	PWY-6167	flavin biosynthesis II (archaea)
L3404_RS02125	PWY-6168	flavin biosynthesis III (fungi)
L3404_RS02125	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS02155	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
L3404_RS02155	PWY-622	starch biosynthesis
L3404_RS02250	PWY-5198	factor 420 biosynthesis
L3404_RS02255	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
L3404_RS02255	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
L3404_RS02260	PWY-5839	menaquinol-7 biosynthesis
L3404_RS02260	PWY-5844	menaquinol-9 biosynthesis
L3404_RS02260	PWY-5849	menaquinol-6 biosynthesis
L3404_RS02260	PWY-5890	menaquinol-10 biosynthesis
L3404_RS02260	PWY-5891	menaquinol-11 biosynthesis
L3404_RS02260	PWY-5892	menaquinol-12 biosynthesis
L3404_RS02260	PWY-5895	menaquinol-13 biosynthesis
L3404_RS02270	PWY-2941	L-lysine biosynthesis II
L3404_RS02270	PWY-5097	L-lysine biosynthesis VI
L3404_RS02280	PWY-1622	formaldehyde assimilation I (serine pathway)
L3404_RS02280	PWY-181	photorespiration
L3404_RS02280	PWY-2161	folate polyglutamylation
L3404_RS02280	PWY-2201	folate transformations I
L3404_RS02280	PWY-3661	glycine betaine degradation I
L3404_RS02280	PWY-3661-1	glycine betaine degradation II (mammalian)
L3404_RS02280	PWY-3841	folate transformations II
L3404_RS02280	PWY-5497	purine nucleobases degradation II (anaerobic)
L3404_RS02285	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
L3404_RS02285	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
L3404_RS02290	PWY-7560	methylerythritol phosphate pathway II
L3404_RS02350	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
L3404_RS02390	PWY-7205	CMP phosphorylation
L3404_RS02405	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
L3404_RS02405	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
L3404_RS02440	PWY-7560	methylerythritol phosphate pathway II
L3404_RS02590	PWY-6825	phosphatidylcholine biosynthesis V
L3404_RS02600	PWY-622	starch biosynthesis
L3404_RS02610	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS02635	PWY-5269	cardiolipin biosynthesis II
L3404_RS02635	PWY-5668	cardiolipin biosynthesis I
L3404_RS02665	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
L3404_RS02665	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
L3404_RS02665	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS02665	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS02665	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
L3404_RS02665	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
L3404_RS02665	PWY-7205	CMP phosphorylation
L3404_RS02665	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
L3404_RS02665	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS02665	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS02665	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS02665	PWY-7224	purine deoxyribonucleosides salvage
L3404_RS02665	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS02665	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
L3404_RS02695	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS02695	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS02695	PWY-6901	superpathway of glucose and xylose degradation
L3404_RS02695	PWY-7003	glycerol degradation to butanol
L3404_RS02830	PWY-5971	palmitate biosynthesis II (bacteria and plants)
L3404_RS02830	PWY-5973	<i>cis</i>-vaccenate biosynthesis
L3404_RS02830	PWY-5989	stearate biosynthesis II (bacteria and plants)
L3404_RS02830	PWY-5994	palmitate biosynthesis I (animals and fungi)
L3404_RS02830	PWY-6113	superpathway of mycolate biosynthesis
L3404_RS02830	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
L3404_RS02830	PWY-6519	8-amino-7-oxononanoate biosynthesis I
L3404_RS02830	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
L3404_RS02830	PWY-7663	gondoate biosynthesis (anaerobic)
L3404_RS02830	PWY-7664	oleate biosynthesis IV (anaerobic)
L3404_RS02830	PWYG-321	mycolate biosynthesis
L3404_RS02835	PWY-2201	folate transformations I
L3404_RS02835	PWY-5497	purine nucleobases degradation II (anaerobic)
L3404_RS02875	PWY-6004	glycine betaine biosynthesis V (from glycine)
L3404_RS02940	PWY-6825	phosphatidylcholine biosynthesis V
L3404_RS02960	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
L3404_RS02960	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
L3404_RS02965	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
L3404_RS02965	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
L3404_RS03120	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS03120	PWY-1622	formaldehyde assimilation I (serine pathway)
L3404_RS03120	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
L3404_RS03120	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS03120	PWY-5723	Rubisco shunt
L3404_RS03120	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
L3404_RS03120	PWY-6886	1-butanol autotrophic biosynthesis
L3404_RS03120	PWY-6901	superpathway of glucose and xylose degradation
L3404_RS03120	PWY-7003	glycerol degradation to butanol
L3404_RS03120	PWY-7124	ethylene biosynthesis V (engineered)
L3404_RS03120	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
L3404_RS03140	PWY-3781	aerobic respiration I (cytochrome c)
L3404_RS03140	PWY-4302	aerobic respiration III (alternative oxidase pathway)
L3404_RS03140	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
L3404_RS03140	PWY-5690	TCA cycle II (plants and fungi)
L3404_RS03140	PWY-6728	methylaspartate cycle
L3404_RS03140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
L3404_RS03140	PWY-7254	TCA cycle VII (acetate-producers)
L3404_RS03140	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
L3404_RS03145	PWY-3781	aerobic respiration I (cytochrome c)
L3404_RS03145	PWY-4302	aerobic respiration III (alternative oxidase pathway)
L3404_RS03145	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
L3404_RS03145	PWY-5690	TCA cycle II (plants and fungi)
L3404_RS03145	PWY-6728	methylaspartate cycle
L3404_RS03145	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
L3404_RS03145	PWY-7254	TCA cycle VII (acetate-producers)
L3404_RS03145	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
L3404_RS03225	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
L3404_RS03255	PWY-5199	factor 420 polyglutamylation
L3404_RS03260	PWY-3841	folate transformations II
L3404_RS03260	PWY-6614	tetrahydrofolate biosynthesis
L3404_RS03265	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
L3404_RS03265	PWY-6148	tetrahydromethanopterin biosynthesis
L3404_RS03265	PWY-6614	tetrahydrofolate biosynthesis
L3404_RS03265	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
L3404_RS03265	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
L3404_RS03270	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
L3404_RS03270	PWY-6148	tetrahydromethanopterin biosynthesis
L3404_RS03270	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
L3404_RS03270	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
L3404_RS03375	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
L3404_RS03375	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
L3404_RS03375	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
L3404_RS03375	PWY-6936	seleno-amino acid biosynthesis
L3404_RS03375	PWY-702	L-methionine biosynthesis II
L3404_RS03380	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
L3404_RS03380	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
L3404_RS03405	PWY-5913	TCA cycle VI (obligate autotrophs)
L3404_RS03405	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
L3404_RS03405	PWY-6638	sulfolactate degradation III
L3404_RS03405	PWY-6642	(<i>R</i>)-cysteate degradation
L3404_RS03405	PWY-6643	coenzyme M biosynthesis II
L3404_RS03405	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
L3404_RS03405	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
L3404_RS03405	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
L3404_RS03500	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
L3404_RS03500	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
L3404_RS03540	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
L3404_RS03575	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS03685	PWY-6823	molybdenum cofactor biosynthesis
L3404_RS03685	PWY-6891	thiazole biosynthesis II (Bacillus)
L3404_RS03685	PWY-6892	thiazole biosynthesis I (E. coli)
L3404_RS03685	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
L3404_RS03715	PWY-1042	glycolysis IV (plant cytosol)
L3404_RS03715	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS03715	PWY-6886	1-butanol autotrophic biosynthesis
L3404_RS03715	PWY-6901	superpathway of glucose and xylose degradation
L3404_RS03715	PWY-7003	glycerol degradation to butanol
L3404_RS03745	PWY-5669	phosphatidylethanolamine biosynthesis I
L3404_RS03810	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
L3404_RS03830	PWY-5667	CDP-diacylglycerol biosynthesis I
L3404_RS03830	PWY-5981	CDP-diacylglycerol biosynthesis III
L3404_RS03845	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
L3404_RS03870	PWY-1622	formaldehyde assimilation I (serine pathway)
L3404_RS03870	PWY-5484	glycolysis II (from fructose 6-phosphate)
L3404_RS03905	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
L3404_RS03910	PWY-5525	D-glucuronate degradation I
L3404_RS03915	PWY-6167	flavin biosynthesis II (archaea)
L3404_RS03915	PWY-6168	flavin biosynthesis III (fungi)
L3404_RS03915	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
L3404_RS03920	PWY-6167	flavin biosynthesis II (archaea)
L3404_RS03920	PWY-6168	flavin biosynthesis III (fungi)
L3404_RS04020	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
L3404_RS04020	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
L3404_RS04055	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
L3404_RS04055	PWY-5723	Rubisco shunt
L3404_RS04055	PWY-6891	thiazole biosynthesis II (Bacillus)
L3404_RS04055	PWY-6892	thiazole biosynthesis I (E. coli)
L3404_RS04055	PWY-6901	superpathway of glucose and xylose degradation
L3404_RS04055	PWY-7560	methylerythritol phosphate pathway II
L3404_RS04090	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
L3404_RS04090	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
L3404_RS04095	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
L3404_RS04095	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
L3404_RS04095	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
L3404_RS04100	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
L3404_RS04100	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
L3404_RS04115	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
L3404_RS04115	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
L3404_RS04115	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
L3404_RS04115	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
L3404_RS04120	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
L3404_RS04120	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
L3404_RS04140	PWY-2781	<i>cis</i>-zeatin biosynthesis
L3404_RS04145	PWY-5198	factor 420 biosynthesis
L3404_RS04145	PWY-7371	1,4-dihydroxy-6-naphthoate biosynthesis II
L3404_RS04145	PWY-7374	1,4-dihydroxy-6-naphthoate biosynthesis I
L3404_RS04300	PWY-5269	cardiolipin biosynthesis II
L3404_RS04300	PWY-5668	cardiolipin biosynthesis I
L3404_RS04305	PWY-622	starch biosynthesis
L3404_RS04320	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
L3404_RS04340	PWY-7560	methylerythritol phosphate pathway II
L3404_RS04360	PWY-5667	CDP-diacylglycerol biosynthesis I
L3404_RS04360	PWY-6453	stigma estolide biosynthesis
L3404_RS04360	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
L3404_RS04360	PWY-7587	oleate biosynthesis III (cyanobacteria)
L3404_RS04410	PWY-6749	CMP-legionaminate biosynthesis I
L3404_RS04415	PWY-6749	CMP-legionaminate biosynthesis I
L3404_RS04440	PWY-5392	reductive TCA cycle II
L3404_RS04440	PWY-5537	pyruvate fermentation to acetate V
L3404_RS04440	PWY-5538	pyruvate fermentation to acetate VI
L3404_RS04440	PWY-5690	TCA cycle II (plants and fungi)
L3404_RS04440	PWY-5913	TCA cycle VI (obligate autotrophs)
L3404_RS04440	PWY-6728	methylaspartate cycle
L3404_RS04440	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
L3404_RS04440	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
L3404_RS04445	PWY-5392	reductive TCA cycle II
L3404_RS04445	PWY-5537	pyruvate fermentation to acetate V
L3404_RS04445	PWY-5538	pyruvate fermentation to acetate VI
L3404_RS04445	PWY-5690	TCA cycle II (plants and fungi)
L3404_RS04445	PWY-5913	TCA cycle VI (obligate autotrophs)
L3404_RS04445	PWY-6728	methylaspartate cycle
L3404_RS04445	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
L3404_RS04445	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
L3404_RS04470	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
L3404_RS04470	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS04470	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
L3404_RS04470	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
L3404_RS04470	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS04470	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS04470	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS04470	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
L3404_RS04475	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
L3404_RS04475	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS04475	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
L3404_RS04475	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
L3404_RS04475	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS04475	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
L3404_RS04475	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
L3404_RS04475	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
L3404_RS04490	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
L3404_RS04490	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
L3404_RS04695	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
L3404_RS04695	PWY-622	starch biosynthesis
