L3404_RS00025 SM00845 GatB domain L3404_RS00080 SM00670 Large family of predicted nucleotide-binding domains L3404_RS00090 SM00287 Bacterial SH3 domain homologues L3404_RS00120 SM00937 L3404_RS00120 L3404_RS00130 SM00382 ATPases associated with a variety of cellular activities L3404_RS00130 SM00962 SRP54-type protein, GTPase domain L3404_RS00130 SM00963 SRP54-type protein, helical bundle domain L3404_RS00155 SM00072 Guanylate kinase homologues. L3404_RS00170 SM00382 ATPases associated with a variety of cellular activities L3404_RS00215 SM00382 ATPases associated with a variety of cellular activities L3404_RS00225 SM00642 Alpha-amylase domain L3404_RS00275 SM00729 Elongator protein 3, MiaB family, Radical SAM L3404_RS00285 SM00861 Transketolase, pyrimidine binding domain L3404_RS00305 SM00506 Appr-1"-p processing enzyme L3404_RS00330 SM00363 S4 RNA-binding domain L3404_RS00335 SM01350 L3404_RS00335 L3404_RS00360 SM00382 ATPases associated with a variety of cellular activities L3404_RS00365 SM00529 Helix-turn-helix diphteria tox regulatory element L3404_RS00395 SM00480 DNA polymerase III beta subunit L3404_RS00440 SM00155 Phospholipase D. Active site motifs. L3404_RS00485 SM00904 Riboflavin kinase L3404_RS00505 SM00316 Ribosomal protein S1-like RNA-binding domain L3404_RS00505 SM00322 K homology RNA-binding domain L3404_RS00510 SM00316 Ribosomal protein S1-like RNA-binding domain L3404_RS00550 SM00363 S4 RNA-binding domain L3404_RS00555 SM00478 endonuclease III L3404_RS00555 SM00525 L3404_RS00555 L3404_RS00575 SM00883 Chaperonin 10 Kd subunit L3404_RS00585 SM00382 ATPases associated with a variety of cellular activities L3404_RS00585 SM01086 C-terminal, D2-small domain, of ClpB protein L3404_RS00630 SM00841 Elongation factor P, C-terminal L3404_RS00630 SM01185 L3404_RS00630 L3404_RS00640 SM00878 Biotin carboxylase C-terminal domain L3404_RS00670 SM00382 ATPases associated with a variety of cellular activities L3404_RS00755 SM00220 Serine/Threonine protein kinases, catalytic domain L3404_RS00760 SM00278 Helix-hairpin-helix DNA-binding motif class 1 L3404_RS00760 SM00292 breast cancer carboxy-terminal domain L3404_RS00760 SM00532 Ligase N family L3404_RS00790 SM00382 ATPases associated with a variety of cellular activities L3404_RS00795 SM00457 membrane-attack complex / perforin L3404_RS00795 SM00472 Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases L3404_RS00810 SM00155 Phospholipase D. Active site motifs. L3404_RS00815 SM00155 Phospholipase D. Active site motifs. L3404_RS00915 SM00382 ATPases associated with a variety of cellular activities L3404_RS00945 SM00732 Likely ribonuclease with RNase H fold. L3404_RS00970 SM00434 DNA Topoisomerase IV L3404_RS00975 SM00387 Histidine kinase-like ATPases L3404_RS00975 SM00433 TopoisomeraseII L3404_RS00995 SM00116 Domain in cystathionine beta-synthase and other proteins. L3404_RS00995 SM00924 MgtE intracellular N domain L3404_RS01030 SM00382 ATPases associated with a variety of cellular activities L3404_RS01035 SM00382 ATPases associated with a variety of cellular activities L3404_RS01110 SM01133 L3404_RS01110 L3404_RS01225 SM00100 Cyclic nucleotide-monophosphate binding domain L3404_RS01235 SM00822 L3404_RS01235 L3404_RS01240 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. L3404_RS01250 SM00493 L3404_RS01250 L3404_RS01260 SM00935 Outer membrane protein (OmpH-like) L3404_RS01280 SM00861 Transketolase, pyrimidine binding domain L3404_RS01300 SM00382 ATPases associated with a variety of cellular activities L3404_RS01300 SM00760 Bacterial dnaA protein helix-turn-helix domain L3404_RS01330 SM01091 Transporter associated domain L3404_RS01335 SM01091 Transporter associated domain L3404_RS01345 SM00331 Sigma factor PP2C-like phosphatases L3404_RS01345 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain L3404_RS01355 SM00479 L3404_RS01355 L3404_RS01370 SM00382 ATPases associated with a variety of cellular activities L3404_RS01385 SM00411 bacterial (prokaryotic) histone like domain L3404_RS01390 SM00646 L3404_RS01390 L3404_RS01425 SM00382 ATPases associated with a variety of cellular activities L3404_RS01425 SM00760 Bacterial dnaA protein helix-turn-helix domain L3404_RS01445 SM00900 L3404_RS01445 L3404_RS01470 SM00155 Phospholipase D. Active site motifs. L3404_RS01480 SM00382 ATPases associated with a variety of cellular activities L3404_RS01480 SM01086 C-terminal, D2-small domain, of ClpB protein L3404_RS01535 SM00358 Double-stranded RNA binding motif L3404_RS01535 SM00535 Ribonuclease III family L3404_RS01540 SM00382 ATPases associated with a variety of cellular activities L3404_RS01555 SM00220 Serine/Threonine protein kinases, catalytic domain L3404_RS01620 SM00663 RNA polymerase I subunit A N-terminus L3404_RS01645 SM00649 Ribosomal protein L11/L12 L3404_RS01650 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. L3404_RS01650 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. L3404_RS01675 SM00316 Ribosomal protein S1-like RNA-binding domain L3404_RS01735 SM00861 Transketolase, pyrimidine binding domain L3404_RS01750 SM00382 ATPases associated with a variety of cellular activities L3404_RS01785 SM00861 Transketolase, pyrimidine binding domain L3404_RS01790 SM00271 DnaJ molecular chaperone homology domain L3404_RS01805 SM00382 ATPases associated with a variety of cellular activities L3404_RS01805 SM00464 Found in ATP-dependent protease La (LON) L3404_RS01825 SM00382 ATPases associated with a variety of cellular activities L3404_RS01855 SM00650 Ribosomal RNA adenine dimethylases L3404_RS01900 SM01130 L3404_RS01900 L3404_RS01910 SM00859 Semialdehyde dehydrogenase, NAD binding domain L3404_RS01995 SM00849 Metallo-beta-lactamase superfamily L3404_RS02000 SM00062 Bacterial periplasmic substrate-binding proteins L3404_RS02040 SM01152 L3404_RS02040 L3404_RS02085 SM00357 Cold shock protein domain L3404_RS02085 SM00955 L3404_RS02085 L3404_RS02115 SM00967 RNA 2'-O ribose methyltransferase substrate binding L3404_RS02155 SM01259 L3404_RS02155 L3404_RS02165 SM00710 Parallel beta-helix repeats L3404_RS02165 SM00869 Autotransporter beta-domain L3404_RS02170 SM00869 Autotransporter beta-domain L3404_RS02185 SM00382 ATPases associated with a variety of cellular activities L3404_RS02235 SM01091 Transporter associated domain L3404_RS02300 SM01403 L3404_RS02300 L3404_RS02305 SM00838 Elongation factor G C-terminus L3404_RS02305 SM00889 Elongation factor G, domain IV L3404_RS02325 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. L3404_RS02325 SM00245 tail specific protease L3404_RS02395 SM00563 Phosphate acyltransferases L3404_RS02400 SM00836 DALR anticodon binding domain L3404_RS02400 SM01016 Arginyl tRNA synthetase N terminal dom L3404_RS02425 SM00937 L3404_RS02425 L3404_RS02430 SM00151 SWI complex, BAF60b domains L3404_RS02470 SM00091 PAS domain L3404_RS02470 SM00387 Histidine kinase-like ATPases L3404_RS02470 SM00388 His Kinase A (phosphoacceptor) domain L3404_RS02475 SM00382 ATPases associated with a variety of cellular activities L3404_RS02475 SM00448 cheY-homologous receiver domain L3404_RS02515 SM01234 L3404_RS02515 L3404_RS02525 SM00873 B3/4 domain L3404_RS02525 SM00874 tRNA synthetase B5 domain L3404_RS02525 SM00896 Ferredoxin-fold anticodon binding domain L3404_RS02585 SM00062 Bacterial periplasmic substrate-binding proteins L3404_RS02610 SM00357 Cold shock protein domain L3404_RS02610 SM00382 ATPases associated with a variety of cellular activities L3404_RS02610 SM00959 Rho termination factor, N-terminal domain L3404_RS02620 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs L3404_RS02620 SM00474 3'-5' exonuclease L3404_RS02620 SM00475 5'-3' exonuclease L3404_RS02620 SM00482 DNA polymerase A domain L3404_RS02655 SM01228 L3404_RS02655 L3404_RS02665 SM00562 L3404_RS02665 L3404_RS02670 SM00278 Helix-hairpin-helix DNA-binding motif class 1 L3404_RS02695 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L3404_RS02705 SM00662 RNA polymerases D L3404_RS02755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. L3404_RS02760 SM01374 L3404_RS02760 L3404_RS02780 SM00322 K homology RNA-binding domain L3404_RS02795 SM01382 L3404_RS02795 L3404_RS02795 SM01383 L3404_RS02795 L3404_RS02850 SM00479 L3404_RS02850 L3404_RS02900 SM00481 DNA polymerase alpha chain like domain L3404_RS02910 SM00028 Tetratricopeptide repeats L3404_RS02950 SM00487 DEAD-like helicases superfamily L3404_RS02950 SM00490 helicase superfamily c-terminal domain L3404_RS02965 SM00729 Elongator protein 3, MiaB family, Radical SAM L3404_RS03055 SM00853 MutL C terminal dimerisation domain L3404_RS03055 SM01340 L3404_RS03055 L3404_RS03090 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain L3404_RS03115 SM00487 DEAD-like helicases superfamily L3404_RS03115 SM00490 helicase superfamily c-terminal domain L3404_RS03120 SM01192 L3404_RS03120 L3404_RS03120 SM01193 L3404_RS03120 L3404_RS03125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain L3404_RS03125 SM00331 Sigma factor PP2C-like phosphatases L3404_RS03130 SM00331 Sigma factor PP2C-like phosphatases L3404_RS03195 SM00257 Lysin motif L3404_RS03235 SM00986 Uracil DNA glycosylase superfamily L3404_RS03235 SM00987 UreE urease accessory protein, C-terminal domain L3404_RS03250 SM01236 L3404_RS03250 L3404_RS03270 SM00905 Dihydroneopterin aldolase L3404_RS03335 SM00518 AP endonuclease family 2 L3404_RS03340 SM00363 S4 RNA-binding domain L3404_RS03340 SM01390 L3404_RS03340 L3404_RS03345 SM00450 Rhodanese Homology Domain L3404_RS03360 SM00862 Transcriptional regulatory protein, C terminal L3404_RS03380 SM01004 Delta-aminolevulinic acid dehydratase L3404_RS03435 SM00151 SWI complex, BAF60b domains L3404_RS03435 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain L3404_RS03435 SM00437 Bacterial DNA topoisomerase I DNA-binding domain L3404_RS03435 SM00493 L3404_RS03435 L3404_RS03470 SM00382 ATPases associated with a variety of cellular activities L3404_RS03490 SM00382 ATPases associated with a variety of cellular activities L3404_RS03520 SM00363 S4 RNA-binding domain L3404_RS03530 SM00434 DNA Topoisomerase IV L3404_RS03535 SM00387 Histidine kinase-like ATPases L3404_RS03535 SM00433 TopoisomeraseII L3404_RS03550 SM00240 Forkhead associated domain L3404_RS03575 SM00382 ATPases associated with a variety of cellular activities L3404_RS03595 SM00220 Serine/Threonine protein kinases, catalytic domain L3404_RS03665 SM00028 Tetratricopeptide repeats L3404_RS03675 SM00382 ATPases associated with a variety of cellular activities L3404_RS03690 SM00470 ParB-like nuclease domain L3404_RS03695 SM00382 ATPases associated with a variety of cellular activities L3404_RS03700 SM00382 ATPases associated with a variety of cellular activities L3404_RS03735 SM00478 endonuclease III L3404_RS03750 SM00028 Tetratricopeptide repeats L3404_RS03755 SM00957 SecA DEAD-like domain L3404_RS03755 SM00958 SecA preprotein cross-linking domain L3404_RS03775 SM00382 ATPases associated with a variety of cellular activities L3404_RS03775 SM00994 ClpX C4-type zinc finger L3404_RS03775 SM01086 C-terminal, D2-small domain, of ClpB protein L3404_RS03800 SM00487 DEAD-like helicases superfamily L3404_RS03800 SM00490 helicase superfamily c-terminal domain L3404_RS03870 SM00855 Phosphoglycerate mutase family L3404_RS03875 SM00363 S4 RNA-binding domain L3404_RS03945 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain L3404_RS03950 SM00849 Metallo-beta-lactamase superfamily L3404_RS03955 SM00382 ATPases associated with a variety of cellular activities L3404_RS03955 SM00843 L3404_RS03955 L3404_RS03990 SM01323 L3404_RS03990 L3404_RS04015 SM00729 Elongator protein 3, MiaB family, Radical SAM L3404_RS04025 SM00487 DEAD-like helicases superfamily L3404_RS04025 SM00490 helicase superfamily c-terminal domain L3404_RS04025 SM00982 L3404_RS04025 L3404_RS04025 SM01058 CarD-like/TRCF domain L3404_RS04030 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain L3404_RS04055 SM00861 Transketolase, pyrimidine binding domain L3404_RS04065 SM00841 Elongation factor P, C-terminal L3404_RS04065 SM01185 L3404_RS04065 L3404_RS04105 SM00257 Lysin motif L3404_RS04160 SM00825 Beta-ketoacyl synthase L3404_RS04175 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase L3404_RS04185 SM00563 Phosphate acyltransferases L3404_RS04200 SM00487 DEAD-like helicases superfamily L3404_RS04200 SM00490 helicase superfamily c-terminal domain L3404_RS04220 SM00840 L3404_RS04220 L3404_RS04265 SM00465 GIY-YIG type nucleases (URI domain) L3404_RS04270 SM00533 DNA-binding domain of DNA mismatch repair MUTS family L3404_RS04270 SM00534 ATPase domain of DNA mismatch repair MUTS family L3404_RS04280 SM00400 zinc finger L3404_RS04280 SM00493 L3404_RS04280 L3404_RS04365 SM00316 Ribosomal protein S1-like RNA-binding domain L3404_RS04390 SM00869 Autotransporter beta-domain L3404_RS04435 SM00382 ATPases associated with a variety of cellular activities L3404_RS04435 SM00962 SRP54-type protein, GTPase domain L3404_RS04445 SM00881 CoA binding domain L3404_RS04450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. L3404_RS04455 SM01264 L3404_RS04455 L3404_RS04545 SM00382 ATPases associated with a variety of cellular activities L3404_RS04550 SM00316 Ribosomal protein S1-like RNA-binding domain L3404_RS04550 SM00322 K homology RNA-binding domain L3404_RS04555 SM01387 L3404_RS04555 L3404_RS04645 SM00245 tail specific protease L3404_RS04695 SM00642 Alpha-amylase domain L3404_RS04710 SM00869 Autotransporter beta-domain L3404_RS04715 SM00869 Autotransporter beta-domain L3404_RS04720 SM00869 Autotransporter beta-domain L3404_RS04725 SM00869 Autotransporter beta-domain L3404_RS04735 SM00869 Autotransporter beta-domain