CFN79_RS00015	SM00257	Lysin motif
CFN79_RS00025	SM00460	Transglutaminase/protease-like homologues
CFN79_RS00045	SM01207	CFN79_RS00045
CFN79_RS00050	SM00905	Dihydroneopterin aldolase
CFN79_RS00070	SM00138	Methyltransferase, chemotaxis proteins 
CFN79_RS00080	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CFN79_RS00105	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CFN79_RS00110	SM01133	CFN79_RS00110
CFN79_RS00115	SM00954	Region found in RelA / SpoT proteins
CFN79_RS00120	SM00478	endonuclease III
CFN79_RS00125	SM00981	CFN79_RS00125
CFN79_RS00160	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS00175	SM00830	Chorismate mutase type II
CFN79_RS00245	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS00245	SM00895	CFN79_RS00245
CFN79_RS00265	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS00295	SM00834	Putative regulatory protein
CFN79_RS00340	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CFN79_RS00370	SM00925	MltA specific insert domain
CFN79_RS00395	SM00400	zinc finger
CFN79_RS00395	SM00493	CFN79_RS00395
CFN79_RS00395	SM00766	DNA primase DnaG DnaB-binding
CFN79_RS00420	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS00420	SM00954	Region found in RelA / SpoT proteins
CFN79_RS00425	SM01409	CFN79_RS00425
CFN79_RS00430	SM00072	Guanylate kinase homologues.
CFN79_RS00540	SM01005	Alanine racemase, C-terminal domain
CFN79_RS00565	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS00575	SM01103	CFN79_RS00575
CFN79_RS00590	SM00851	MGS-like domain
CFN79_RS00590	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CFN79_RS00600	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CFN79_RS00655	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS00675	SM00893	Electron transfer flavoprotein domain
CFN79_RS00680	SM00893	Electron transfer flavoprotein domain
CFN79_RS00700	SM00646	CFN79_RS00700
CFN79_RS00740	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN79_RS00750	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS00750	SM00962	SRP54-type protein, GTPase domain
CFN79_RS00750	SM00963	SRP54-type protein, helical bundle domain
CFN79_RS00785	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN79_RS00805	SM00448	cheY-homologous receiver domain
CFN79_RS00805	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS00830	SM00331	Sigma factor PP2C-like phosphatases
CFN79_RS00830	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CFN79_RS00835	SM00220	Serine/Threonine protein kinases, catalytic domain
CFN79_RS00865	SM01252	CFN79_RS00865
CFN79_RS00890	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS00895	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS00895	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS00910	SM00411	bacterial (prokaryotic) histone like domain
CFN79_RS00975	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS00995	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS01015	SM00858	CFN79_RS01015
CFN79_RS01065	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS01080	SM00028	Tetratricopeptide repeats
CFN79_RS01085	SM00292	breast cancer carboxy-terminal domain
CFN79_RS01085	SM00532	Ligase N family
CFN79_RS01090	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CFN79_RS01095	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS01110	SM00968	SMC proteins Flexible Hinge Domain
CFN79_RS01120	SM00732	Likely ribonuclease with RNase H fold.
CFN79_RS01170	SM00346	helix_turn_helix isocitrate lyase regulation
CFN79_RS01175	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS01245	SM00495	Chitin-binding domain type 3
CFN79_RS01260	SM00855	Phosphoglycerate mutase family
CFN79_RS01285	SM00422	helix_turn_helix, mercury resistance
CFN79_RS01315	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CFN79_RS01320	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CFN79_RS01380	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS01390	SM00938	Nitrogen regulatory protein P-II
CFN79_RS01455	SM00883	Chaperonin 10 Kd subunit
CFN79_RS01480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS01480	SM00387	Histidine kinase-like ATPases
CFN79_RS01480	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS01485	SM00448	cheY-homologous receiver domain
CFN79_RS01485	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS01520	SM00842	Cell division protein FtsA
CFN79_RS01540	SM00965	Secretin and TonB N terminus short domain
CFN79_RS01560	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS01625	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS01625	SM00091	PAS domain
CFN79_RS01625	SM00267	diguanylate cyclase
CFN79_RS01675	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS01675	SM00091	PAS domain
CFN79_RS01675	SM00387	Histidine kinase-like ATPases
CFN79_RS01675	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS01695	SM00919	Malic enzyme, NAD binding domain
CFN79_RS01695	SM01274	CFN79_RS01695
CFN79_RS01715	SM00903	Flavin reductase like domain
CFN79_RS01720	SM00481	DNA polymerase alpha chain like domain
CFN79_RS01725	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS01765	SM00028	Tetratricopeptide repeats
CFN79_RS01770	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS01770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS01780	SM00448	cheY-homologous receiver domain
CFN79_RS01785	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS01805	SM00387	Histidine kinase-like ATPases
CFN79_RS01805	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS01810	SM00448	cheY-homologous receiver domain
CFN79_RS01810	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS01860	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS01860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS01915	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS01930	SM00248	ankyrin repeats
CFN79_RS01965	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS01980	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS02015	SM00155	Phospholipase D. Active site motifs.
CFN79_RS02025	SM00671	Sel1-like repeats.
CFN79_RS02030	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS02085	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS02140	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CFN79_RS02140	SM00474	3'-5' exonuclease
CFN79_RS02140	SM00475	5'-3' exonuclease
CFN79_RS02140	SM00482	DNA polymerase A domain
CFN79_RS02165	SM00014	Acid phosphatase homologues
CFN79_RS02190	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS02230	SM00448	cheY-homologous receiver domain
CFN79_RS02230	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS02235	SM00387	Histidine kinase-like ATPases
CFN79_RS02235	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS02325	SM00829	Enoylreductase
CFN79_RS02340	SM00100	Cyclic nucleotide-monophosphate binding domain
CFN79_RS02435	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS02435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS02485	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS02500	SM00788	Adenylosuccinate synthetase
CFN79_RS02535	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS02540	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS02545	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS02565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS02570	SM00448	cheY-homologous receiver domain
CFN79_RS02575	SM00387	Histidine kinase-like ATPases
CFN79_RS02575	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS02575	SM00448	cheY-homologous receiver domain
CFN79_RS02580	SM00448	cheY-homologous receiver domain
CFN79_RS02585	SM00073	Histidine Phosphotransfer domain
CFN79_RS02585	SM00260	Two component signalling adaptor domain
CFN79_RS02585	SM00387	Histidine kinase-like ATPases
CFN79_RS02585	SM00448	cheY-homologous receiver domain
CFN79_RS02590	SM00260	Two component signalling adaptor domain
CFN79_RS02595	SM00028	Tetratricopeptide repeats
CFN79_RS02595	SM00138	Methyltransferase, chemotaxis proteins 
CFN79_RS02600	SM00260	Two component signalling adaptor domain
CFN79_RS02645	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN79_RS02645	SM01134	CFN79_RS02645
CFN79_RS02660	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS02700	SM00470	ParB-like nuclease domain
CFN79_RS02715	SM01228	CFN79_RS02715
CFN79_RS02735	SM00978	CFN79_RS02735
CFN79_RS02740	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS02745	SM00749	bacterial OsmY and nodulation domain
CFN79_RS02825	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS02830	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS02850	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS02850	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS03000	SM00917	LeuA allosteric (dimerisation) domain
CFN79_RS03005	SM00387	Histidine kinase-like ATPases
CFN79_RS03005	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS03010	SM00448	cheY-homologous receiver domain
CFN79_RS03010	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS03085	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS03140	SM00644	CFN79_RS03140
CFN79_RS03155	SM00091	PAS domain
CFN79_RS03155	SM00387	Histidine kinase-like ATPases
CFN79_RS03155	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS03160	SM00448	cheY-homologous receiver domain
CFN79_RS03160	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS03165	SM00344	helix_turn_helix ASNC type
CFN79_RS03170	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CFN79_RS03195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS03195	SM00866	CFN79_RS03195
CFN79_RS03200	SM00495	Chitin-binding domain type 3
CFN79_RS03230	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS03275	SM01209	CFN79_RS03275
CFN79_RS03275	SM01210	CFN79_RS03275
CFN79_RS03280	SM00798	AICARFT/IMPCHase bienzyme
CFN79_RS03280	SM00851	MGS-like domain
CFN79_RS03300	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS03300	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS03300	SM00091	PAS domain
CFN79_RS03300	SM00267	diguanylate cyclase
CFN79_RS03300	SM01049	CFN79_RS03300
CFN79_RS03315	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS03330	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS03350	SM00267	diguanylate cyclase
CFN79_RS03355	SM00860	SMI1 / KNR4 family
CFN79_RS03370	SM01321	CFN79_RS03370
CFN79_RS03410	SM00947	Carbonic anhydrase
CFN79_RS03445	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS03625	SM00855	Phosphoglycerate mutase family
CFN79_RS03725	SM00341	Helicase and RNase D C-terminal
CFN79_RS03725	SM00487	DEAD-like helicases superfamily
CFN79_RS03725	SM00490	helicase superfamily c-terminal domain
CFN79_RS03725	SM00956	CFN79_RS03725
CFN79_RS03740	SM00091	PAS domain
CFN79_RS03740	SM00387	Histidine kinase-like ATPases
CFN79_RS03740	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS03745	SM00448	cheY-homologous receiver domain
CFN79_RS03750	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS03815	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN79_RS03865	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS03920	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS04150	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS04150	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN79_RS04190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS04205	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS04220	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS04220	SM00091	PAS domain
CFN79_RS04220	SM00267	diguanylate cyclase
CFN79_RS04235	SM00487	DEAD-like helicases superfamily
CFN79_RS04235	SM00490	helicase superfamily c-terminal domain
CFN79_RS04245	SM01322	CFN79_RS04245
CFN79_RS04315	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS04350	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS04475	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CFN79_RS04500	SM01321	CFN79_RS04500
CFN79_RS04535	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS04535	SM00866	CFN79_RS04535
CFN79_RS04610	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS04610	SM00267	diguanylate cyclase
CFN79_RS04625	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS04635	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS04780	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS04815	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS04845	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS04865	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS04870	SM00873	B3/4 domain
CFN79_RS04900	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS04935	SM00267	diguanylate cyclase
CFN79_RS04940	SM00267	diguanylate cyclase
CFN79_RS04965	SM00450	Rhodanese Homology Domain
CFN79_RS04970	SM00986	Uracil DNA glycosylase superfamily
CFN79_RS04970	SM00987	UreE urease accessory protein, C-terminal domain 
CFN79_RS04975	SM01091	Transporter associated domain
CFN79_RS05010	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS05020	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS05030	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS05050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS05050	SM00387	Histidine kinase-like ATPases
CFN79_RS05050	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS05055	SM00448	cheY-homologous receiver domain
CFN79_RS05055	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS05070	SM00829	Enoylreductase
CFN79_RS05085	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS05095	SM00267	diguanylate cyclase
CFN79_RS05095	SM01079	CFN79_RS05095
CFN79_RS05100	SM00448	cheY-homologous receiver domain
CFN79_RS05100	SM00850	LytTr DNA-binding domain
CFN79_RS05105	SM00028	Tetratricopeptide repeats
CFN79_RS05105	SM00448	cheY-homologous receiver domain
CFN79_RS05115	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS05120	SM01018	B12 binding domain
CFN79_RS05180	SM00861	Transketolase, pyrimidine binding domain
CFN79_RS05185	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CFN79_RS05225	SM00448	cheY-homologous receiver domain
CFN79_RS05230	SM00028	Tetratricopeptide repeats
CFN79_RS05230	SM00448	cheY-homologous receiver domain
CFN79_RS05240	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS05335	SM01001	AIR carboxylase
CFN79_RS05360	SM01118	CFN79_RS05360
CFN79_RS05455	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS05460	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN79_RS05460	SM01134	CFN79_RS05460
CFN79_RS05475	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS05490	SM01011	Aminopeptidase P, N-terminal domain
CFN79_RS05500	SM01040	BRO family, N-terminal domain
CFN79_RS05525	SM00411	bacterial (prokaryotic) histone like domain
CFN79_RS05555	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS05570	SM00346	helix_turn_helix isocitrate lyase regulation
CFN79_RS05780	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS05795	SM00650	Ribosomal RNA adenine dimethylases
CFN79_RS05800	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS05815	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS05820	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS05830	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS05850	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN79_RS05850	SM01134	CFN79_RS05850
CFN79_RS05855	SM00028	Tetratricopeptide repeats
CFN79_RS05900	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CFN79_RS05900	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CFN79_RS05935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS05935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS05950	SM00955	CFN79_RS05950
CFN79_RS05955	SM00267	diguanylate cyclase
CFN79_RS05955	SM00448	cheY-homologous receiver domain
CFN79_RS05970	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS05975	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS05985	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN79_RS06005	SM00937	CFN79_RS06005
CFN79_RS06025	SM00434	DNA Topoisomerase IV
CFN79_RS06030	SM00387	Histidine kinase-like ATPases
CFN79_RS06030	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS06035	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS06035	SM00448	cheY-homologous receiver domain
CFN79_RS06070	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS06085	SM00487	DEAD-like helicases superfamily
CFN79_RS06085	SM00490	helicase superfamily c-terminal domain
CFN79_RS06165	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS06170	SM00267	diguanylate cyclase
CFN79_RS06180	SM00971	Serine acetyltransferase, N-terminal
CFN79_RS06185	SM00671	Sel1-like repeats.
CFN79_RS06190	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS06200	SM01219	CFN79_RS06200
CFN79_RS06215	SM00953	CFN79_RS06215
CFN79_RS06230	SM01400	CFN79_RS06230
CFN79_RS06240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS06240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS06255	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS06285	SM00878	Biotin carboxylase C-terminal domain
CFN79_RS06350	SM00387	Histidine kinase-like ATPases
CFN79_RS06350	SM00433	TopoisomeraseII
CFN79_RS06355	SM00480	DNA polymerase III beta subunit
CFN79_RS06360	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS06360	SM00760	Bacterial dnaA protein helix-turn-helix domain
CFN79_RS06375	SM01234	CFN79_RS06375
CFN79_RS06400	SM00387	Histidine kinase-like ATPases
CFN79_RS06400	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS06400	SM00448	cheY-homologous receiver domain
CFN79_RS06405	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS06405	SM01009	AlkA N-terminal domain
CFN79_RS06420	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS06440	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS06440	SM01091	Transporter associated domain
CFN79_RS06480	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS06480	SM00876	Biotin and Thiamin Synthesis associated domain
CFN79_RS06490	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS06490	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS06490	SM00267	diguanylate cyclase
CFN79_RS06560	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS06625	SM00845	GatB domain
CFN79_RS06695	SM00842	Cell division protein FtsA
CFN79_RS06700	SM00864	Tubulin/FtsZ family, GTPase domain
CFN79_RS06700	SM00865	Tubulin/FtsZ family, C-terminal domain
CFN79_RS06720	SM00822	CFN79_RS06720
CFN79_RS06785	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS06790	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS06940	SM01230	CFN79_RS06940
CFN79_RS06945	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS06945	SM01049	CFN79_RS06945
CFN79_RS06995	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS07010	SM00957	SecA DEAD-like domain
CFN79_RS07010	SM00958	SecA preprotein cross-linking domain
CFN79_RS07060	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CFN79_RS07060	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CFN79_RS07060	SM00493	CFN79_RS07060
CFN79_RS07105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS07105	SM00387	Histidine kinase-like ATPases
CFN79_RS07105	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS07110	SM00448	cheY-homologous receiver domain
CFN79_RS07145	SM01152	CFN79_RS07145
CFN79_RS07195	SM00965	Secretin and TonB N terminus short domain
CFN79_RS07240	SM00450	Rhodanese Homology Domain
CFN79_RS07245	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS07245	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS07255	SM01091	Transporter associated domain
CFN79_RS07265	SM00495	Chitin-binding domain type 3
CFN79_RS07265	SM00636	CFN79_RS07265
CFN79_RS07280	SM00267	diguanylate cyclase
CFN79_RS07285	SM00480	DNA polymerase III beta subunit
CFN79_RS07290	SM00422	helix_turn_helix, mercury resistance
CFN79_RS07290	SM00871	Bacterial transcription activator, effector binding domain
CFN79_RS07350	SM00020	Trypsin-like serine protease
CFN79_RS07355	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN79_RS07365	SM00749	bacterial OsmY and nodulation domain
CFN79_RS07370	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS07370	SM00448	cheY-homologous receiver domain
CFN79_RS07380	SM00387	Histidine kinase-like ATPases
CFN79_RS07380	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS07395	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS07415	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CFN79_RS07455	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS07460	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS07460	SM00962	SRP54-type protein, GTPase domain
CFN79_RS07460	SM00963	SRP54-type protein, helical bundle domain
CFN79_RS07505	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CFN79_RS07505	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CFN79_RS07510	SM00649	Ribosomal protein L11/L12
CFN79_RS07540	SM00663	RNA polymerase I subunit A N-terminus
CFN79_RS07555	SM00838	Elongation factor G C-terminus
CFN79_RS07555	SM00889	Elongation factor G, domain IV
CFN79_RS07565	SM01403	CFN79_RS07565
CFN79_RS07585	SM01382	CFN79_RS07585
CFN79_RS07585	SM01383	CFN79_RS07585
CFN79_RS07600	SM00322	K homology RNA-binding domain
CFN79_RS07620	SM01374	CFN79_RS07620
CFN79_RS07625	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CFN79_RS07695	SM00363	S4 RNA-binding domain
CFN79_RS07695	SM01390	CFN79_RS07695
CFN79_RS07700	SM00662	RNA polymerases D
CFN79_RS07720	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS07720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS07725	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS07725	SM01049	CFN79_RS07725
CFN79_RS07735	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS07735	SM01091	Transporter associated domain
CFN79_RS07760	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS07775	SM00363	S4 RNA-binding domain
CFN79_RS07795	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS07795	SM00871	Bacterial transcription activator, effector binding domain
CFN79_RS07805	SM00267	diguanylate cyclase
CFN79_RS07805	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS07840	SM00984	UDP binding domain
CFN79_RS07980	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS08035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS08040	SM00450	Rhodanese Homology Domain
CFN79_RS08065	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS08075	SM00267	diguanylate cyclase
CFN79_RS08140	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS08155	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS08240	SM00563	Phosphate acyltransferases
CFN79_RS08245	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CFN79_RS08245	SM01232	CFN79_RS08245
CFN79_RS08250	SM00028	Tetratricopeptide repeats
CFN79_RS08270	SM01400	CFN79_RS08270
CFN79_RS08295	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS08295	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CFN79_RS08350	SM00267	diguanylate cyclase
CFN79_RS08360	SM00155	Phospholipase D. Active site motifs.
CFN79_RS08545	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS08545	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN79_RS08625	SM00825	Beta-ketoacyl synthase
CFN79_RS08635	SM00822	CFN79_RS08635
CFN79_RS08655	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS08730	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS08760	SM00487	DEAD-like helicases superfamily
CFN79_RS08760	SM00490	helicase superfamily c-terminal domain
CFN79_RS08770	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS08830	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CFN79_RS08835	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CFN79_RS08915	SM00091	PAS domain
CFN79_RS08915	SM00267	diguanylate cyclase
CFN79_RS08920	SM00996	S-adenosyl-L-homocysteine hydrolase
CFN79_RS08920	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CFN79_RS08935	SM00344	helix_turn_helix ASNC type
CFN79_RS09020	SM00878	Biotin carboxylase C-terminal domain
CFN79_RS09100	SM00869	Autotransporter beta-domain
CFN79_RS09105	SM00858	CFN79_RS09105
CFN79_RS09125	SM00487	DEAD-like helicases superfamily
CFN79_RS09125	SM00490	helicase superfamily c-terminal domain
CFN79_RS09150	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS09150	SM00448	cheY-homologous receiver domain
CFN79_RS09155	SM00448	cheY-homologous receiver domain
CFN79_RS09165	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS09170	SM00260	Two component signalling adaptor domain
CFN79_RS09175	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS09180	SM00073	Histidine Phosphotransfer domain
CFN79_RS09180	SM00260	Two component signalling adaptor domain
CFN79_RS09180	SM00387	Histidine kinase-like ATPases
CFN79_RS09180	SM01231	CFN79_RS09180
CFN79_RS09190	SM00448	cheY-homologous receiver domain
CFN79_RS09245	SM00479	CFN79_RS09245
CFN79_RS09270	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS09270	SM00962	SRP54-type protein, GTPase domain
CFN79_RS09295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS09295	SM00895	CFN79_RS09295
CFN79_RS09310	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS09310	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS09310	SM00091	PAS domain
CFN79_RS09310	SM00267	diguanylate cyclase
CFN79_RS09310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS09315	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS09315	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS09315	SM00091	PAS domain
CFN79_RS09315	SM00267	diguanylate cyclase
CFN79_RS09340	SM00060	Fibronectin type 3 domain
CFN79_RS09340	SM00495	Chitin-binding domain type 3
CFN79_RS09340	SM00636	CFN79_RS09340
CFN79_RS09360	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS09360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS09400	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS09470	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS09485	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS09515	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS09515	SM00866	CFN79_RS09515
CFN79_RS09550	SM00861	Transketolase, pyrimidine binding domain
CFN79_RS09575	SM00881	CoA binding domain
CFN79_RS09600	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS09600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS09605	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS09605	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS09615	SM00769	Water Stress and Hypersensitive response
CFN79_RS09650	SM00271	DnaJ molecular chaperone homology domain
CFN79_RS09695	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS09700	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS09765	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS09765	SM00091	PAS domain
CFN79_RS09765	SM00387	Histidine kinase-like ATPases
CFN79_RS09770	SM00155	Phospholipase D. Active site motifs.
CFN79_RS09780	SM00387	Histidine kinase-like ATPases
CFN79_RS09780	SM00433	TopoisomeraseII
CFN79_RS09845	SM00487	DEAD-like helicases superfamily
CFN79_RS09845	SM00490	helicase superfamily c-terminal domain
CFN79_RS09920	SM00947	Carbonic anhydrase
CFN79_RS09950	SM00267	diguanylate cyclase
CFN79_RS09965	SM00487	DEAD-like helicases superfamily
CFN79_RS09965	SM00490	helicase superfamily c-terminal domain
CFN79_RS09965	SM00982	CFN79_RS09965
CFN79_RS09965	SM01058	CarD-like/TRCF domain
CFN79_RS09970	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS09970	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS09970	SM00091	PAS domain
CFN79_RS09970	SM00267	diguanylate cyclase
CFN79_RS09975	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CFN79_RS09995	SM00422	helix_turn_helix, mercury resistance
CFN79_RS10150	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CFN79_RS10180	SM00448	cheY-homologous receiver domain
CFN79_RS10180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS10185	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS10185	SM00091	PAS domain
CFN79_RS10185	SM00387	Histidine kinase-like ATPases
CFN79_RS10185	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS10185	SM00448	cheY-homologous receiver domain
CFN79_RS10205	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS10270	SM00357	Cold shock protein domain
CFN79_RS10295	SM00257	Lysin motif
CFN79_RS10300	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS10315	SM00479	CFN79_RS10315
CFN79_RS10370	SM00631	CFN79_RS10370
CFN79_RS10390	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS10390	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CFN79_RS10525	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS10525	SM00871	Bacterial transcription activator, effector binding domain
CFN79_RS10530	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS10530	SM01240	CFN79_RS10530
CFN79_RS10540	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CFN79_RS10540	SM00465	GIY-YIG type nucleases (URI domain)
CFN79_RS10580	SM00644	CFN79_RS10580
CFN79_RS10605	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS10625	SM00945	ProQ/FINO family
CFN79_RS10630	SM00387	Histidine kinase-like ATPases
CFN79_RS10685	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS10705	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS10705	SM00267	diguanylate cyclase
CFN79_RS10710	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS10745	SM00853	MutL C terminal dimerisation domain
CFN79_RS10745	SM01340	CFN79_RS10745
CFN79_RS10765	SM01323	CFN79_RS10765
CFN79_RS10780	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CFN79_RS10805	SM00873	B3/4 domain
CFN79_RS10805	SM00874	tRNA synthetase B5 domain
CFN79_RS10805	SM00896	Ferredoxin-fold anticodon binding domain
CFN79_RS10810	SM00411	bacterial (prokaryotic) histone like domain
CFN79_RS10815	SM00422	helix_turn_helix, mercury resistance
CFN79_RS10835	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS10835	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS10875	SM00528	Domain in histone-like proteins of HNS family
CFN79_RS10885	SM00631	CFN79_RS10885
CFN79_RS10900	SM00028	Tetratricopeptide repeats
CFN79_RS10905	SM00458	Ricin-type beta-trefoil
CFN79_RS10925	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS10955	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS10960	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS10980	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS10990	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS11090	SM00232	JAB/MPN domain
CFN79_RS11180	SM00528	Domain in histone-like proteins of HNS family
CFN79_RS11200	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS11205	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS11205	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS11205	SM00091	PAS domain
CFN79_RS11205	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS11205	SM00267	diguanylate cyclase
CFN79_RS11220	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS11225	SM00841	Elongation factor P, C-terminal
CFN79_RS11225	SM01185	CFN79_RS11225
CFN79_RS11235	SM00387	Histidine kinase-like ATPases
CFN79_RS11240	SM00448	cheY-homologous receiver domain
CFN79_RS11240	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS11260	SM00487	DEAD-like helicases superfamily
CFN79_RS11285	SM01101	CFN79_RS11285
CFN79_RS11435	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS11455	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS11455	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS11460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS11460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS11465	SM00448	cheY-homologous receiver domain
CFN79_RS11465	SM00850	LytTr DNA-binding domain
CFN79_RS11470	SM00387	Histidine kinase-like ATPases
CFN79_RS11480	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS11500	SM00248	ankyrin repeats
CFN79_RS11585	SM00495	Chitin-binding domain type 3
CFN79_RS11630	SM01230	CFN79_RS11630
CFN79_RS11635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS11650	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS11650	SM00091	PAS domain
CFN79_RS11650	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS11670	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS11685	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS11685	SM00322	K homology RNA-binding domain
CFN79_RS11705	SM01387	CFN79_RS11705
CFN79_RS11710	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS11710	SM00322	K homology RNA-binding domain
CFN79_RS11785	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS11835	SM00387	Histidine kinase-like ATPases
CFN79_RS11835	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS11835	SM00448	cheY-homologous receiver domain
CFN79_RS11840	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS11840	SM00448	cheY-homologous receiver domain
CFN79_RS11865	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS11915	SM00822	CFN79_RS11915
CFN79_RS11935	SM00823	Phosphopantetheine attachment site
CFN79_RS11935	SM00824	Thioesterase
CFN79_RS11940	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS11965	SM01081	Putative carbohydrate binding domain
CFN79_RS11985	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12050	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12055	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12060	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS12065	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS12085	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS12095	SM00098	Alkaline phosphatase homologues
CFN79_RS12100	SM00098	Alkaline phosphatase homologues
CFN79_RS12110	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12110	SM00487	DEAD-like helicases superfamily
CFN79_RS12110	SM00490	helicase superfamily c-terminal domain
CFN79_RS12110	SM00847	Helicase associated domain (HA2)  Add an annotation
CFN79_RS12115	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS12135	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS12140	SM00420	helix_turn_helix, Deoxyribose operon repressor
CFN79_RS12140	SM01134	CFN79_RS12140
CFN79_RS12180	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS12180	SM00732	Likely ribonuclease with RNase H fold.
CFN79_RS12275	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12280	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CFN79_RS12325	SM00327	von Willebrand factor (vWF) type A domain
CFN79_RS12325	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12375	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS12375	SM00091	PAS domain
CFN79_RS12375	SM00267	diguanylate cyclase
CFN79_RS12375	SM00448	cheY-homologous receiver domain
CFN79_RS12380	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS12380	SM00387	Histidine kinase-like ATPases
CFN79_RS12380	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS12380	SM00448	cheY-homologous receiver domain
CFN79_RS12385	SM00138	Methyltransferase, chemotaxis proteins 
CFN79_RS12390	SM00073	Histidine Phosphotransfer domain
CFN79_RS12390	SM00387	Histidine kinase-like ATPases
CFN79_RS12390	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS12390	SM00448	cheY-homologous receiver domain
CFN79_RS12395	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS12400	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS12415	SM00357	Cold shock protein domain
CFN79_RS12415	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12415	SM00959	Rho termination factor, N-terminal domain
CFN79_RS12425	SM00091	PAS domain
CFN79_RS12425	SM00267	diguanylate cyclase
CFN79_RS12500	SM00448	cheY-homologous receiver domain
CFN79_RS12500	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS12505	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS12505	SM00387	Histidine kinase-like ATPases
CFN79_RS12505	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS12550	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CFN79_RS12565	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12580	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12590	SM00493	CFN79_RS12590
CFN79_RS12635	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS12650	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS12650	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS12650	SM00091	PAS domain
CFN79_RS12650	SM00267	diguanylate cyclase
CFN79_RS12650	SM00448	cheY-homologous receiver domain
CFN79_RS12655	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS12655	SM00091	PAS domain
CFN79_RS12655	SM00387	Histidine kinase-like ATPases
CFN79_RS12655	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS12655	SM00448	cheY-homologous receiver domain
CFN79_RS12655	SM01079	CFN79_RS12655
CFN79_RS12700	SM00829	Enoylreductase
CFN79_RS12740	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS12775	SM00271	DnaJ molecular chaperone homology domain
CFN79_RS12785	SM01004	Delta-aminolevulinic acid dehydratase
CFN79_RS12800	SM00829	Enoylreductase
CFN79_RS12805	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS12835	SM00563	Phosphate acyltransferases
CFN79_RS12865	SM00448	cheY-homologous receiver domain
CFN79_RS12865	SM00850	LytTr DNA-binding domain
CFN79_RS12870	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS12880	SM00267	diguanylate cyclase
CFN79_RS12910	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CFN79_RS12930	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS12935	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS12980	SM00870	CFN79_RS12980
CFN79_RS13000	SM00481	DNA polymerase alpha chain like domain
CFN79_RS13025	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS13025	SM00091	PAS domain
CFN79_RS13025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS13040	SM00858	CFN79_RS13040
CFN79_RS13105	SM00155	Phospholipase D. Active site motifs.
CFN79_RS13115	SM00344	helix_turn_helix ASNC type
CFN79_RS13125	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS13125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS13135	SM00387	Histidine kinase-like ATPases
CFN79_RS13135	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS13135	SM00448	cheY-homologous receiver domain
CFN79_RS13190	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS13205	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS13245	SM00840	CFN79_RS13245
CFN79_RS13285	SM00871	Bacterial transcription activator, effector binding domain
CFN79_RS13290	SM00028	Tetratricopeptide repeats
CFN79_RS13295	SM00878	Biotin carboxylase C-terminal domain
CFN79_RS13295	SM01209	CFN79_RS13295
CFN79_RS13330	SM00448	cheY-homologous receiver domain
CFN79_RS13330	SM00850	LytTr DNA-binding domain
CFN79_RS13335	SM00387	Histidine kinase-like ATPases
CFN79_RS13360	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS13470	SM00422	helix_turn_helix, mercury resistance
CFN79_RS13475	SM00458	Ricin-type beta-trefoil
CFN79_RS13525	SM00763	PrkA AAA domain
CFN79_RS13545	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS13615	SM00878	Biotin carboxylase C-terminal domain
CFN79_RS13630	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS13670	SM00363	S4 RNA-binding domain
CFN79_RS13675	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS13690	SM00014	Acid phosphatase homologues
CFN79_RS13705	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS13720	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS13780	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS13785	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS13810	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS13810	SM00866	CFN79_RS13810
CFN79_RS13820	SM00072	Guanylate kinase homologues.
CFN79_RS13830	SM00267	diguanylate cyclase
CFN79_RS13830	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS13840	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS13870	SM01116	CFN79_RS13870
CFN79_RS13875	SM00947	Carbonic anhydrase
CFN79_RS13900	SM00823	Phosphopantetheine attachment site
CFN79_RS13900	SM00824	Thioesterase
CFN79_RS13920	SM00344	helix_turn_helix ASNC type
CFN79_RS13930	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS13940	SM01130	CFN79_RS13940
CFN79_RS13995	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS14020	SM00495	Chitin-binding domain type 3
CFN79_RS14025	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS14030	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS14055	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS14080	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS14090	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS14095	SM00344	helix_turn_helix ASNC type
CFN79_RS14105	SM01005	Alanine racemase, C-terminal domain
CFN79_RS14115	SM00912	haemagglutination activity domain
CFN79_RS14135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS14135	SM00895	CFN79_RS14135
CFN79_RS14350	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS14365	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS14390	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS14465	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS14480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS14525	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS14525	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN79_RS14540	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS14540	SM00448	cheY-homologous receiver domain
CFN79_RS14545	SM00448	cheY-homologous receiver domain
CFN79_RS14550	SM00073	Histidine Phosphotransfer domain
CFN79_RS14550	SM00091	PAS domain
CFN79_RS14550	SM00387	Histidine kinase-like ATPases
CFN79_RS14550	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS14550	SM00448	cheY-homologous receiver domain
CFN79_RS14595	SM00836	DALR anticodon binding domain
CFN79_RS14595	SM01016	Arginyl tRNA synthetase N terminal dom
CFN79_RS14610	SM00944	Pro-kumamolisin, activation domain
CFN79_RS14615	SM00944	Pro-kumamolisin, activation domain
CFN79_RS14725	SM00491	CFN79_RS14725
CFN79_RS14995	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS15020	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS15025	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS15190	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS15195	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS15215	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS15220	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CFN79_RS15220	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CFN79_RS15230	SM01230	CFN79_RS15230
CFN79_RS15320	SM00829	Enoylreductase
CFN79_RS15330	SM01211	CFN79_RS15330
CFN79_RS15335	SM00938	Nitrogen regulatory protein P-II
CFN79_RS15350	SM01130	CFN79_RS15350
CFN79_RS15365	SM00829	Enoylreductase
CFN79_RS15415	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN79_RS15425	SM00838	Elongation factor G C-terminus
CFN79_RS15440	SM00358	Double-stranded RNA binding motif
CFN79_RS15440	SM00535	Ribonuclease III family
CFN79_RS15490	SM00852	Probable molybdopterin binding domain
CFN79_RS15550	SM00422	helix_turn_helix, mercury resistance
CFN79_RS15560	SM00487	DEAD-like helicases superfamily
CFN79_RS15560	SM00490	helicase superfamily c-terminal domain
CFN79_RS15620	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS15755	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS15760	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS15780	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS15800	SM00363	S4 RNA-binding domain
CFN79_RS15855	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN79_RS15865	SM00935	Outer membrane protein (OmpH-like)
CFN79_RS15895	SM00986	Uracil DNA glycosylase superfamily
CFN79_RS15895	SM00987	UreE urease accessory protein, C-terminal domain 
CFN79_RS15905	SM00387	Histidine kinase-like ATPases
CFN79_RS15905	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS15905	SM00448	cheY-homologous receiver domain
CFN79_RS15915	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS15915	SM00448	cheY-homologous receiver domain
CFN79_RS15950	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS15975	SM00448	cheY-homologous receiver domain
CFN79_RS15975	SM01012	CFN79_RS15975
CFN79_RS16000	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN79_RS16020	SM00923	MbtH-like protein
CFN79_RS16025	SM00823	Phosphopantetheine attachment site
CFN79_RS16025	SM00824	Thioesterase
CFN79_RS16030	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS16090	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS16110	SM00999	Aerolysin toxin
CFN79_RS16160	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS16215	SM00458	Ricin-type beta-trefoil
CFN79_RS16235	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS16250	SM00434	DNA Topoisomerase IV
CFN79_RS16300	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS16300	SM00267	diguanylate cyclase
CFN79_RS16325	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS16345	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS16345	SM00448	cheY-homologous receiver domain
CFN79_RS16350	SM00091	PAS domain
CFN79_RS16350	SM00387	Histidine kinase-like ATPases
CFN79_RS16350	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS16380	SM00100	Cyclic nucleotide-monophosphate binding domain
CFN79_RS16480	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS16495	SM00852	Probable molybdopterin binding domain
CFN79_RS16520	SM00830	Chorismate mutase type II
CFN79_RS16540	SM00986	Uracil DNA glycosylase superfamily
CFN79_RS16540	SM00987	UreE urease accessory protein, C-terminal domain 
CFN79_RS16565	SM00822	CFN79_RS16565
CFN79_RS16585	SM00479	CFN79_RS16585
CFN79_RS16610	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS16720	SM00843	CFN79_RS16720
CFN79_RS16745	SM00448	cheY-homologous receiver domain
CFN79_RS16750	SM00448	cheY-homologous receiver domain
CFN79_RS16765	SM00363	S4 RNA-binding domain
CFN79_RS16790	SM00838	Elongation factor G C-terminus
CFN79_RS16835	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS16880	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS16880	SM01049	CFN79_RS16880
CFN79_RS16900	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS16955	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS16970	SM00880	CFN79_RS16970
CFN79_RS16980	SM00226	Low molecular weight phosphatase family
CFN79_RS16985	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN79_RS17000	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN79_RS17005	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN79_RS17010	SM00825	Beta-ketoacyl synthase
CFN79_RS17035	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS17040	SM00822	CFN79_RS17040
CFN79_RS17040	SM00823	Phosphopantetheine attachment site
CFN79_RS17040	SM00825	Beta-ketoacyl synthase
CFN79_RS17040	SM00826	CFN79_RS17040
CFN79_RS17040	SM01294	CFN79_RS17040
CFN79_RS17045	SM00822	CFN79_RS17045
CFN79_RS17045	SM00823	Phosphopantetheine attachment site
CFN79_RS17045	SM00825	Beta-ketoacyl synthase
CFN79_RS17045	SM01294	CFN79_RS17045
CFN79_RS17050	SM00822	CFN79_RS17050
CFN79_RS17050	SM00823	Phosphopantetheine attachment site
CFN79_RS17050	SM00825	Beta-ketoacyl synthase
CFN79_RS17050	SM00826	CFN79_RS17050
CFN79_RS17050	SM01294	CFN79_RS17050
CFN79_RS17060	SM00822	CFN79_RS17060
CFN79_RS17080	SM00823	Phosphopantetheine attachment site
CFN79_RS17080	SM00824	Thioesterase
CFN79_RS17080	SM00825	Beta-ketoacyl synthase
CFN79_RS17080	SM01294	CFN79_RS17080
CFN79_RS17085	SM00822	CFN79_RS17085
CFN79_RS17085	SM00823	Phosphopantetheine attachment site
CFN79_RS17085	SM00825	Beta-ketoacyl synthase
CFN79_RS17085	SM00826	CFN79_RS17085
CFN79_RS17105	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS17110	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS17150	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS17150	SM00843	CFN79_RS17150
CFN79_RS17210	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS17235	SM00448	cheY-homologous receiver domain
CFN79_RS17235	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS17240	SM00073	Histidine Phosphotransfer domain
CFN79_RS17240	SM00387	Histidine kinase-like ATPases
CFN79_RS17240	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS17240	SM00448	cheY-homologous receiver domain
CFN79_RS17245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS17260	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS17275	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS17275	SM00448	cheY-homologous receiver domain
CFN79_RS17280	SM00448	cheY-homologous receiver domain
CFN79_RS17285	SM00138	Methyltransferase, chemotaxis proteins 
CFN79_RS17290	SM00260	Two component signalling adaptor domain
CFN79_RS17295	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS17300	SM00073	Histidine Phosphotransfer domain
CFN79_RS17300	SM00260	Two component signalling adaptor domain
CFN79_RS17300	SM00387	Histidine kinase-like ATPases
CFN79_RS17300	SM01231	CFN79_RS17300
CFN79_RS17310	SM00448	cheY-homologous receiver domain
CFN79_RS17315	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS17320	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS17355	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS17415	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS17425	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS17425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS17425	SM00387	Histidine kinase-like ATPases
CFN79_RS17430	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS17430	SM00448	cheY-homologous receiver domain
CFN79_RS17435	SM00248	ankyrin repeats
CFN79_RS17455	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CFN79_RS17520	SM00411	bacterial (prokaryotic) histone like domain
CFN79_RS17525	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS17525	SM00464	Found in ATP-dependent protease La (LON)
CFN79_RS17530	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS17530	SM00994	ClpX C4-type zinc finger
CFN79_RS17530	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN79_RS17545	SM01359	CFN79_RS17545
CFN79_RS17545	SM01360	CFN79_RS17545
CFN79_RS17570	SM00822	CFN79_RS17570
CFN79_RS17585	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS17585	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CFN79_RS17585	SM00267	diguanylate cyclase
CFN79_RS17610	SM00091	PAS domain
CFN79_RS17610	SM00267	diguanylate cyclase
CFN79_RS17630	SM00091	PAS domain
CFN79_RS17630	SM00387	Histidine kinase-like ATPases
CFN79_RS17630	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS17630	SM00448	cheY-homologous receiver domain
CFN79_RS17635	SM00331	Sigma factor PP2C-like phosphatases
CFN79_RS17635	SM00448	cheY-homologous receiver domain
CFN79_RS17645	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS17685	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS17720	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS17720	SM00091	PAS domain
CFN79_RS17720	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS17750	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS17750	SM00091	PAS domain
CFN79_RS17750	SM00267	diguanylate cyclase
CFN79_RS17820	SM00028	Tetratricopeptide repeats
CFN79_RS17890	SM00822	CFN79_RS17890
CFN79_RS17905	SM00861	Transketolase, pyrimidine binding domain
CFN79_RS17955	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS17975	SM00100	Cyclic nucleotide-monophosphate binding domain
CFN79_RS17975	SM00419	helix_turn_helix, cAMP Regulatory protein
CFN79_RS18070	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS18120	SM00636	CFN79_RS18120
CFN79_RS18160	SM00479	CFN79_RS18160
CFN79_RS18180	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS18200	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS18245	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CFN79_RS18250	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CFN79_RS18260	SM00248	ankyrin repeats
CFN79_RS18265	SM01329	CFN79_RS18265
CFN79_RS18300	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS18310	SM00363	S4 RNA-binding domain
CFN79_RS18345	SM00422	helix_turn_helix, mercury resistance
CFN79_RS18405	SM00463	Small MutS-related domain
CFN79_RS18415	SM00670	Large family of predicted nucleotide-binding domains
CFN79_RS18435	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS18485	SM00344	helix_turn_helix ASNC type
CFN79_RS18540	SM00912	haemagglutination activity domain
CFN79_RS18555	SM00487	DEAD-like helicases superfamily
CFN79_RS18555	SM00490	helicase superfamily c-terminal domain
CFN79_RS18575	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS18615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS18615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS18620	SM00487	DEAD-like helicases superfamily
CFN79_RS18620	SM00490	helicase superfamily c-terminal domain
CFN79_RS18635	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS18640	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS18645	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS18645	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS18700	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
CFN79_RS18700	SM00912	haemagglutination activity domain
CFN79_RS18740	SM00047	Lysozyme subfamily 2
CFN79_RS18785	SM00448	cheY-homologous receiver domain
CFN79_RS18795	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS18800	SM00487	DEAD-like helicases superfamily
CFN79_RS18800	SM00490	helicase superfamily c-terminal domain
CFN79_RS18895	SM00487	DEAD-like helicases superfamily
CFN79_RS18905	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS19110	SM00530	Helix-turn-helix XRE-family like proteins 
CFN79_RS19195	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS19195	SM01049	CFN79_RS19195
CFN79_RS19230	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS19245	SM01240	CFN79_RS19245
CFN79_RS19275	SM00244	prohibitin homologues
CFN79_RS19310	SM00495	Chitin-binding domain type 3
CFN79_RS19310	SM00636	CFN79_RS19310
CFN79_RS19325	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS19340	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS19345	SM00479	CFN79_RS19345
CFN79_RS19380	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS19380	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS19380	SM00091	PAS domain
CFN79_RS19380	SM00267	diguanylate cyclase
CFN79_RS19395	SM00354	helix_turn _helix lactose operon repressor
CFN79_RS19420	SM00421	helix_turn_helix, Lux Regulon
CFN79_RS19420	SM00448	cheY-homologous receiver domain
CFN79_RS19430	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS19460	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS19460	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CFN79_RS19485	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS19520	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS19520	SM00091	PAS domain
CFN79_RS19520	SM00387	Histidine kinase-like ATPases
CFN79_RS19520	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS19520	SM00448	cheY-homologous receiver domain
CFN79_RS19520	SM01079	CFN79_RS19520
CFN79_RS19525	SM00267	diguanylate cyclase
CFN79_RS19525	SM00448	cheY-homologous receiver domain
CFN79_RS19530	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS19540	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS19570	SM00047	Lysozyme subfamily 2
CFN79_RS19585	SM00100	Cyclic nucleotide-monophosphate binding domain
CFN79_RS19585	SM00419	helix_turn_helix, cAMP Regulatory protein
CFN79_RS19635	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS19695	SM00448	cheY-homologous receiver domain
CFN79_RS19700	SM00387	Histidine kinase-like ATPases
CFN79_RS19700	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS19700	SM00448	cheY-homologous receiver domain
CFN79_RS19725	SM00354	helix_turn _helix lactose operon repressor
CFN79_RS19740	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS19765	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS19805	SM00260	Two component signalling adaptor domain
CFN79_RS19805	SM00448	cheY-homologous receiver domain
CFN79_RS19810	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS19810	SM00895	CFN79_RS19810
CFN79_RS19830	SM00984	UDP binding domain
CFN79_RS19835	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CFN79_RS19850	SM00411	bacterial (prokaryotic) histone like domain
CFN79_RS19855	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS19880	SM00354	helix_turn _helix lactose operon repressor
CFN79_RS19955	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS19965	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CFN79_RS19985	SM00387	Histidine kinase-like ATPases
CFN79_RS19985	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS19990	SM00448	cheY-homologous receiver domain
CFN79_RS19990	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS20015	SM00363	S4 RNA-binding domain
CFN79_RS20020	SM00903	Flavin reductase like domain
CFN79_RS20065	SM00267	diguanylate cyclase
CFN79_RS20080	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS20095	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS20100	SM00091	PAS domain
CFN79_RS20100	SM00387	Histidine kinase-like ATPases
CFN79_RS20100	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS20100	SM01079	CFN79_RS20100
CFN79_RS20140	SM00936	Penicillin-binding protein 5, C-terminal domain 
CFN79_RS20155	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS20180	SM00831	Cation transporter/ATPase, N-terminus
CFN79_RS20205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS20205	SM00387	Histidine kinase-like ATPases
CFN79_RS20205	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS20210	SM00448	cheY-homologous receiver domain
CFN79_RS20210	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS20285	SM01011	Aminopeptidase P, N-terminal domain
CFN79_RS20345	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS20370	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS20370	SM00448	cheY-homologous receiver domain
CFN79_RS20380	SM00226	Low molecular weight phosphatase family
CFN79_RS20385	SM00108	Bulb-type mannose-specific lectin
CFN79_RS20410	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS20420	SM00849	Metallo-beta-lactamase superfamily
CFN79_RS20430	SM00487	DEAD-like helicases superfamily
CFN79_RS20430	SM00490	helicase superfamily c-terminal domain
CFN79_RS20450	SM01234	CFN79_RS20450
CFN79_RS20460	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS20470	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS20475	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS20505	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS20515	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS20520	SM00796	Allophanate hydrolase subunit 1
CFN79_RS20525	SM00797	Allophanate hydrolase subunit 2
CFN79_RS20555	SM00344	helix_turn_helix ASNC type
CFN79_RS20600	SM00977	TilS substrate C-terminal domain
CFN79_RS20670	SM00257	Lysin motif
CFN79_RS20675	SM00267	diguanylate cyclase
CFN79_RS20675	SM01080	CFN79_RS20675
CFN79_RS20690	SM00478	endonuclease III
CFN79_RS20690	SM01009	AlkA N-terminal domain
CFN79_RS20710	SM00852	Probable molybdopterin binding domain
CFN79_RS20740	SM00073	Histidine Phosphotransfer domain
CFN79_RS20745	SM00357	Cold shock protein domain
CFN79_RS20755	SM00563	Phosphate acyltransferases
CFN79_RS20765	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS20770	SM00855	Phosphoglycerate mutase family
CFN79_RS20820	SM00267	diguanylate cyclase
CFN79_RS20845	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS20860	SM00091	PAS domain
CFN79_RS20860	SM00387	Histidine kinase-like ATPases
CFN79_RS20865	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS20865	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS20865	SM00267	diguanylate cyclase
CFN79_RS20865	SM00448	cheY-homologous receiver domain
CFN79_RS20945	SM00867	YceI-like domain 
CFN79_RS20950	SM00867	YceI-like domain 
CFN79_RS20995	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS20995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS21025	SM00478	endonuclease III
CFN79_RS21025	SM00525	CFN79_RS21025
CFN79_RS21030	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN79_RS21055	SM00642	Alpha-amylase domain
CFN79_RS21070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CFN79_RS21070	SM00866	CFN79_RS21070
CFN79_RS21120	SM00244	prohibitin homologues
CFN79_RS21125	SM00244	prohibitin homologues
CFN79_RS21140	SM00495	Chitin-binding domain type 3
CFN79_RS21140	SM00636	CFN79_RS21140
CFN79_RS21160	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS21160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CFN79_RS21165	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS21190	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS21210	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS21255	SM00387	Histidine kinase-like ATPases
CFN79_RS21260	SM00448	cheY-homologous receiver domain
CFN79_RS21260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CFN79_RS21305	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CFN79_RS21320	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CFN79_RS21320	SM00245	tail specific protease
CFN79_RS21345	SM01034	Sensors of blue-light using FAD
CFN79_RS21350	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS21355	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS21360	SM00257	Lysin motif
CFN79_RS21470	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS21485	SM00363	S4 RNA-binding domain
CFN79_RS21535	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS21590	SM00822	CFN79_RS21590
CFN79_RS21620	SM00825	Beta-ketoacyl synthase
CFN79_RS21630	SM00822	CFN79_RS21630
CFN79_RS21635	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CFN79_RS21695	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS21695	SM00267	diguanylate cyclase
CFN79_RS21740	SM00448	cheY-homologous receiver domain
CFN79_RS21745	SM00138	Methyltransferase, chemotaxis proteins 
CFN79_RS21750	SM00091	PAS domain
CFN79_RS21750	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS21755	SM00260	Two component signalling adaptor domain
CFN79_RS21760	SM00073	Histidine Phosphotransfer domain
CFN79_RS21760	SM00260	Two component signalling adaptor domain
CFN79_RS21760	SM00387	Histidine kinase-like ATPases
CFN79_RS21760	SM01231	CFN79_RS21760
CFN79_RS21765	SM00448	cheY-homologous receiver domain
CFN79_RS21775	SM00387	Histidine kinase-like ATPases
CFN79_RS21775	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS21780	SM00260	Two component signalling adaptor domain
CFN79_RS21780	SM00448	cheY-homologous receiver domain
CFN79_RS21785	SM00260	Two component signalling adaptor domain
CFN79_RS21785	SM00448	cheY-homologous receiver domain
CFN79_RS21790	SM00448	cheY-homologous receiver domain
CFN79_RS21800	SM00073	Histidine Phosphotransfer domain
CFN79_RS21800	SM00260	Two component signalling adaptor domain
CFN79_RS21800	SM00387	Histidine kinase-like ATPases
CFN79_RS21800	SM01231	CFN79_RS21800
CFN79_RS21805	SM00052	Putative diguanylate phosphodiesterase
CFN79_RS21820	SM00986	Uracil DNA glycosylase superfamily
CFN79_RS21820	SM00987	UreE urease accessory protein, C-terminal domain 
CFN79_RS21840	SM01192	CFN79_RS21840
CFN79_RS21840	SM01193	CFN79_RS21840
CFN79_RS21850	SM00267	diguanylate cyclase
CFN79_RS21890	SM00267	diguanylate cyclase
CFN79_RS21970	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS22020	SM01065	Starch binding domain
CFN79_RS22090	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CFN79_RS22090	SM00091	PAS domain
CFN79_RS22090	SM00387	Histidine kinase-like ATPases
CFN79_RS22090	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS22090	SM00448	cheY-homologous receiver domain
CFN79_RS22095	SM00267	diguanylate cyclase
CFN79_RS22095	SM00448	cheY-homologous receiver domain
CFN79_RS22100	SM00331	Sigma factor PP2C-like phosphatases
CFN79_RS22100	SM00448	cheY-homologous receiver domain
CFN79_RS22105	SM01351	CFN79_RS22105
CFN79_RS22160	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS22165	SM00944	Pro-kumamolisin, activation domain
CFN79_RS22210	SM00316	Ribosomal protein S1-like RNA-binding domain
CFN79_RS22210	SM00357	Cold shock protein domain
CFN79_RS22210	SM00955	CFN79_RS22210
CFN79_RS22235	SM00387	Histidine kinase-like ATPases
CFN79_RS22235	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS22240	SM00448	cheY-homologous receiver domain
CFN79_RS22240	SM00862	Transcriptional regulatory protein, C terminal
CFN79_RS22255	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS22285	SM00788	Adenylosuccinate synthetase
CFN79_RS22295	SM00244	prohibitin homologues
CFN79_RS22300	SM00244	prohibitin homologues
CFN79_RS22315	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS22320	SM00564	beta-propeller repeat
CFN79_RS22345	SM00028	Tetratricopeptide repeats
CFN79_RS22355	SM00562	CFN79_RS22355
CFN79_RS22430	SM01060	CFN79_RS22430
CFN79_RS22460	SM00899	CFN79_RS22460
CFN79_RS22505	SM00506	Appr-1"-p processing enzyme
CFN79_RS22540	SM00904	Riboflavin kinase
CFN79_RS22570	SM00822	CFN79_RS22570
CFN79_RS22575	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS22580	SM01130	CFN79_RS22580
CFN79_RS22595	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CFN79_RS22605	SM00014	Acid phosphatase homologues
CFN79_RS22615	SM00116	Domain in cystathionine beta-synthase and other proteins.
CFN79_RS22615	SM00924	MgtE intracellular N domain
CFN79_RS22630	SM00450	Rhodanese Homology Domain
CFN79_RS22635	SM01230	CFN79_RS22635
CFN79_RS22645	SM00387	Histidine kinase-like ATPases
CFN79_RS22645	SM00388	His Kinase A (phosphoacceptor) domain
CFN79_RS22650	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS22650	SM00448	cheY-homologous receiver domain
CFN79_RS22705	SM00855	Phosphoglycerate mutase family
CFN79_RS22820	SM00342	helix_turn_helix, arabinose operon control protein
CFN79_RS22840	SM00062	Bacterial periplasmic substrate-binding proteins
CFN79_RS22850	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS22895	SM00347	helix_turn_helix multiple antibiotic resistance protein
CFN79_RS22955	SM00100	Cyclic nucleotide-monophosphate binding domain
CFN79_RS22955	SM00419	helix_turn_helix, cAMP Regulatory protein
CFN79_RS22960	SM00729	Elongator protein 3, MiaB family, Radical SAM
CFN79_RS22965	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CFN79_RS22975	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CFN79_RS22975	SM00534	ATPase domain of DNA mismatch repair MUTS family
CFN79_RS23005	SM00357	Cold shock protein domain
CFN79_RS23015	SM00382	ATPases associated with a variety of cellular activities
CFN79_RS23015	SM01086	C-terminal, D2-small domain, of ClpB protein
CFN79_RS23050	SM00881	CoA binding domain
