locus-tag class description CI104_RS00005 PF00308 Bacterial dnaA protein CI104_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CI104_RS00005 PF11638 DnaA N-terminal domain CI104_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CI104_RS00010 PF02767 DNA polymerase III beta subunit, central domain CI104_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CI104_RS00015 PF02463 RecF/RecN/SMC N terminal domain CI104_RS00020 PF00204 DNA gyrase B CI104_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus CI104_RS00020 PF01751 Toprim domain CI104_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS00020 PF18053 DNA gyrase B subunit insert domain CI104_RS00030 PF07729 FCD domain CI104_RS00030 PF00392 Bacterial regulatory proteins, gntR family CI104_RS00035 PF05035 2-keto-3-deoxy-galactonokinase CI104_RS00040 PF01081 KDPG and KHG aldolase CI104_RS00045 PF13378 Enolase C-terminal domain-like CI104_RS00045 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS00050 PF07690 Major Facilitator Superfamily CI104_RS00055 PF01494 FAD binding domain CI104_RS00060 PF07676 WD40-like Beta Propeller Repeat CI104_RS00060 PF12566 Protein of unknown function (DUF3748) CI104_RS00065 PF07119 Protein of unknown function (DUF1375) CI104_RS00075 PF00011 Hsp20/alpha crystallin family CI104_RS00080 PF00011 Hsp20/alpha crystallin family CI104_RS00085 PF06826 Predicted Permease Membrane Region CI104_RS00085 PF02080 TrkA-C domain CI104_RS00090 PF07702 UTRA domain CI104_RS00090 PF00392 Bacterial regulatory proteins, gntR family CI104_RS00095 PF02378 Phosphotransferase system, EIIC CI104_RS00095 PF00367 phosphotransferase system, EIIB CI104_RS00100 PF11975 Family 4 glycosyl hydrolase C-terminal domain CI104_RS00100 PF02056 Family 4 glycosyl hydrolase CI104_RS00105 PF02656 Domain of unknown function (DUF202) CI104_RS00110 PF02656 Domain of unknown function (DUF202) CI104_RS00120 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS00125 PF02447 GntP family permease CI104_RS00130 PF03466 LysR substrate binding domain CI104_RS00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS00140 PF07690 Major Facilitator Superfamily CI104_RS00150 PF13939 Toxin TisB, type I toxin-antitoxin system CI104_RS00160 PF08049 IlvB leader peptide CI104_RS00165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CI104_RS00165 PF00205 Thiamine pyrophosphate enzyme, central domain CI104_RS00165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS00170 PF01842 ACT domain CI104_RS00175 PF08220 DeoR-like helix-turn-helix domain CI104_RS00175 PF00455 DeoR C terminal sensor domain CI104_RS00180 PF00294 pfkB family carbohydrate kinase CI104_RS00185 PF07690 Major Facilitator Superfamily CI104_RS00195 PF00072 Response regulator receiver domain CI104_RS00195 PF00196 Bacterial regulatory proteins, luxR family CI104_RS00200 PF07730 Histidine kinase CI104_RS00200 PF05231 MASE1 CI104_RS00200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS00205 PF07690 Major Facilitator Superfamily CI104_RS00210 PF07690 Major Facilitator Superfamily CI104_RS00215 PF13382 Adenine deaminase C-terminal domain CI104_RS00215 PF01979 Amidohydrolase family CI104_RS00220 PF00860 Permease family CI104_RS00225 PF06711 Protein of unknown function (DUF1198) CI104_RS00240 PF07690 Major Facilitator Superfamily CI104_RS00245 PF02264 LamB porin CI104_RS00250 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CI104_RS00255 PF00232 Glycosyl hydrolase family 1 CI104_RS00260 PF02378 Phosphotransferase system, EIIC CI104_RS00265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS00270 PF00356 Bacterial regulatory proteins, lacI family CI104_RS00285 PF00158 Sigma-54 interaction domain CI104_RS00285 PF00874 PRD domain CI104_RS00300 PF03830 PTS system sorbose subfamily IIB component CI104_RS00300 PF03610 PTS system fructose IIA component CI104_RS00305 PF03609 PTS system sorbose-specific iic component CI104_RS00310 PF03613 PTS system mannose/fructose/sorbose family IID component CI104_RS00315 PF03841 L-seryl-tRNA selenium transferase CI104_RS00320 PF07071 KDGP aldolase CI104_RS00325 PF03180 NLPA lipoprotein CI104_RS00330 PF00892 EamA-like transporter family CI104_RS00340 PF03466 LysR substrate binding domain CI104_RS00340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS00345 PF00248 Aldo/keto reductase family CI104_RS00350 PF00106 short chain dehydrogenase CI104_RS00360 PF07338 Protein of unknown function (DUF1471) CI104_RS00365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CI104_RS00375 PF07702 UTRA domain CI104_RS00375 PF00392 Bacterial regulatory proteins, gntR family CI104_RS00380 PF01380 SIS domain CI104_RS00385 PF00294 pfkB family carbohydrate kinase CI104_RS00390 PF03605 Anaerobic c4-dicarboxylate membrane transporter CI104_RS00405 PF13802 Galactose mutarotase-like CI104_RS00405 PF01055 Glycosyl hydrolases family 31 CI104_RS00410 PF07690 Major Facilitator Superfamily CI104_RS00420 PF02056 Family 4 glycosyl hydrolase CI104_RS00420 PF11975 Family 4 glycosyl hydrolase C-terminal domain CI104_RS00425 PF02378 Phosphotransferase system, EIIC CI104_RS00425 PF00367 phosphotransferase system, EIIB CI104_RS00430 PF05170 AsmA family CI104_RS00435 PF00860 Permease family CI104_RS00440 PF03616 Sodium/glutamate symporter CI104_RS00445 PF00271 Helicase conserved C-terminal domain CI104_RS00445 PF17191 RecG wedge domain CI104_RS00445 PF00270 DEAD/DEAH box helicase CI104_RS00450 PF12105 SpoU, rRNA methylase, C-terminal CI104_RS00450 PF00588 SpoU rRNA Methylase family CI104_RS00455 PF13291 ACT domain CI104_RS00455 PF02824 TGS domain CI104_RS00455 PF04607 Region found in RelA / SpoT proteins CI104_RS00460 PF01192 RNA polymerase Rpb6 CI104_RS00465 PF00625 Guanylate kinase CI104_RS00470 PF03120 NAD-dependent DNA ligase OB-fold domain CI104_RS00470 PF01653 NAD-dependent DNA ligase adenylation domain CI104_RS00475 PF03458 UPF0126 domain CI104_RS00480 PF03755 YicC-like family, N-terminal region CI104_RS00480 PF08340 Domain of unknown function (DUF1732) CI104_RS00490 PF01138 3' exoribonuclease family, domain 1 CI104_RS00490 PF03725 3' exoribonuclease family, domain 2 CI104_RS00495 PF00156 Phosphoribosyl transferase domain CI104_RS00500 PF00440 Bacterial regulatory proteins, tetR family CI104_RS00505 PF00692 dUTPase CI104_RS00510 PF02441 Flavoprotein CI104_RS00510 PF04127 DNA / pantothenate metabolism flavoprotein CI104_RS00515 PF04002 RadC-like JAB domain CI104_RS00520 PF00830 Ribosomal L28 family CI104_RS00525 PF00471 Ribosomal protein L33 CI104_RS00530 PF06827 Zinc finger found in FPG and IleRS CI104_RS00530 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CI104_RS00530 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CI104_RS00535 PF01467 Cytidylyltransferase-like CI104_RS00540 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CI104_RS00545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CI104_RS00550 PF13439 Glycosyltransferase Family 4 CI104_RS00550 PF00534 Glycosyl transferases group 1 CI104_RS00560 PF07922 Glycosyltransferase family 52 CI104_RS00565 PF13439 Glycosyltransferase Family 4 CI104_RS00565 PF00534 Glycosyl transferases group 1 CI104_RS00570 PF08437 Glycosyl transferase family 8 C-terminal CI104_RS00570 PF01501 Glycosyl transferase family 8 CI104_RS00575 PF01501 Glycosyl transferase family 8 CI104_RS00575 PF08437 Glycosyl transferase family 8 C-terminal CI104_RS00580 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) CI104_RS00590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CI104_RS00595 PF04932 O-Antigen ligase CI104_RS00600 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CI104_RS00605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CI104_RS00610 PF01370 NAD dependent epimerase/dehydratase family CI104_RS00615 PF00155 Aminotransferase class I and II CI104_RS00620 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS00620 PF00107 Zinc-binding dehydrogenase CI104_RS00625 PF00535 Glycosyl transferase family 2 CI104_RS00630 PF04748 Divergent polysaccharide deacetylase CI104_RS00635 PF01551 Peptidase family M23 CI104_RS00640 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CI104_RS00640 PF01676 Metalloenzyme superfamily CI104_RS00650 PF00581 Rhodanese-like domain CI104_RS00655 PF00462 Glutaredoxin CI104_RS00660 PF02556 Preprotein translocase subunit SecB CI104_RS00665 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CI104_RS00665 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CI104_RS00670 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS00670 PF06426 Serine acetyltransferase, N-terminal CI104_RS00675 PF00588 SpoU rRNA Methylase family CI104_RS00680 PF07690 Major Facilitator Superfamily CI104_RS00685 PF01070 FMN-dependent dehydrogenase CI104_RS00690 PF00392 Bacterial regulatory proteins, gntR family CI104_RS00690 PF07729 FCD domain CI104_RS00695 PF02652 L-lactate permease CI104_RS00700 PF10928 Protein of unknown function (DUF2810) CI104_RS00710 PF05068 Mannitol repressor CI104_RS00715 PF01232 Mannitol dehydrogenase Rossmann domain CI104_RS00715 PF08125 Mannitol dehydrogenase C-terminal domain CI104_RS00720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS00720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS00720 PF02378 Phosphotransferase system, EIIC CI104_RS00725 PF11742 Protein of unknown function (DUF3302) CI104_RS00730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS00730 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS00735 PF13417 Glutathione S-transferase, N-terminal domain CI104_RS00735 PF00043 Glutathione S-transferase, C-terminal domain CI104_RS00740 PF12390 Selenocysteine synthase N terminal CI104_RS00740 PF03841 L-seryl-tRNA selenium transferase CI104_RS00745 PF03144 Elongation factor Tu domain 2 CI104_RS00745 PF00009 Elongation factor Tu GTP binding domain CI104_RS00745 PF09106 Elongation factor SelB, winged helix CI104_RS00745 PF09107 Elongation factor SelB, winged helix CI104_RS00750 PF00465 Iron-containing alcohol dehydrogenase CI104_RS00755 PF00171 Aldehyde dehydrogenase family CI104_RS00765 PF11742 Protein of unknown function (DUF3302) CI104_RS00770 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS00770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS00775 PF03466 LysR substrate binding domain CI104_RS00775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS00780 PF06629 MltA-interacting protein MipA CI104_RS00790 PF13247 4Fe-4S dicluster domain CI104_RS00795 PF00155 Aminotransferase class I and II CI104_RS00800 PF00128 Alpha amylase, catalytic domain CI104_RS00810 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CI104_RS00815 PF12833 Helix-turn-helix domain CI104_RS00820 PF02653 Branched-chain amino acid transport system / permease component CI104_RS00825 PF00005 ABC transporter CI104_RS00830 PF13407 Periplasmic binding protein domain CI104_RS00840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS00840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS00845 PF05360 yiaA/B two helix domain CI104_RS00850 PF01757 Acyltransferase family CI104_RS00855 PF13983 YsaB-like lipoprotein CI104_RS00860 PF02091 Glycyl-tRNA synthetase alpha subunit CI104_RS00865 PF05746 DALR anticodon binding domain CI104_RS00865 PF02092 Glycyl-tRNA synthetase beta subunit CI104_RS00875 PF00313 'Cold-shock' DNA-binding domain CI104_RS00880 PF01381 Helix-turn-helix CI104_RS00885 PF07690 Major Facilitator Superfamily CI104_RS00890 PF11254 Protein of unknown function (DUF3053) CI104_RS00895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CI104_RS00895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CI104_RS00900 PF07690 Major Facilitator Superfamily CI104_RS00905 PF00294 pfkB family carbohydrate kinase CI104_RS00915 PF00356 Bacterial regulatory proteins, lacI family CI104_RS00920 PF13488 Glycine zipper CI104_RS00920 PF00691 OmpA family CI104_RS00925 PF01568 Molydopterin dinucleotide binding domain CI104_RS00925 PF18364 Molybdopterin oxidoreductase N-terminal domain CI104_RS00925 PF00384 Molybdopterin oxidoreductase CI104_RS00930 PF00583 Acetyltransferase (GNAT) family CI104_RS00935 PF03352 Methyladenine glycosylase CI104_RS00940 PF03797 Autotransporter beta-domain CI104_RS00945 PF07690 Major Facilitator Superfamily CI104_RS00950 PF08019 Phosphoethanolamine transferase EptA/EptB CI104_RS00950 PF00884 Sulfatase CI104_RS00985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS00995 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS01000 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS01000 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS01005 PF00005 ABC transporter CI104_RS01005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS01010 PF00005 ABC transporter CI104_RS01010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS01015 PF03222 Tryptophan/tyrosine permease family CI104_RS01020 PF13940 Toxin Ldr, type I toxin-antitoxin system CI104_RS01030 PF11120 Cellulose biosynthesis protein BcsF CI104_RS01035 PF10995 Cellulose biosynthesis GIL CI104_RS01040 PF10945 Cellulose biosynthesis protein BcsR CI104_RS01045 PF06564 Cellulose biosynthesis protein BcsQ CI104_RS01050 PF07238 PilZ domain CI104_RS01050 PF00535 Glycosyl transferase family 2 CI104_RS01050 PF03552 Cellulose synthase CI104_RS01055 PF03170 Bacterial cellulose synthase subunit CI104_RS01060 PF01270 Glycosyl hydrolases family 8 CI104_RS01065 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CI104_RS01070 PF00672 HAMP domain CI104_RS01070 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS01070 PF17154 Gammaproteobacterial periplasmic sensor domain CI104_RS01070 PF00563 EAL domain CI104_RS01080 PF00375 Sodium:dicarboxylate symporter family CI104_RS01085 PF05193 Peptidase M16 inactive domain CI104_RS01085 PF00675 Insulinase (Peptidase family M16) CI104_RS01090 PF00294 pfkB family carbohydrate kinase CI104_RS01095 PF00563 EAL domain CI104_RS01100 PF05170 AsmA family CI104_RS01105 PF00083 Sugar (and other) transporter CI104_RS01105 PF07690 Major Facilitator Superfamily CI104_RS01115 PF03631 Virulence factor BrkB CI104_RS01120 PF03466 LysR substrate binding domain CI104_RS01120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS01130 PF00196 Bacterial regulatory proteins, luxR family CI104_RS01135 PF13302 Acetyltransferase (GNAT) domain CI104_RS01145 PF01204 Trehalase CI104_RS01150 PF03150 Di-haem cytochrome c peroxidase CI104_RS01150 PF14376 Haem-binding domain CI104_RS01150 PF00034 Cytochrome c CI104_RS01155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CI104_RS01155 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS01160 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CI104_RS01165 PF01432 Peptidase family M3 CI104_RS01170 PF04445 Putative SAM-dependent methyltransferase CI104_RS01175 PF00854 POT family CI104_RS01180 PF00582 Universal stress protein family CI104_RS01185 PF10625 Universal stress protein B (UspB) CI104_RS01190 PF01384 Phosphate transporter family CI104_RS01200 PF13533 Biotin-lipoyl like CI104_RS01205 PF00005 ABC transporter CI104_RS01230 PF00005 ABC transporter CI104_RS01235 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS01240 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS01245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS01255 PF01648 4'-phosphopantetheinyl transferase superfamily CI104_RS01260 PF00109 Beta-ketoacyl synthase, N-terminal domain CI104_RS01260 PF02801 Beta-ketoacyl synthase, C-terminal domain CI104_RS01270 PF07977 FabA-like domain CI104_RS01275 PF02801 Beta-ketoacyl synthase, C-terminal domain CI104_RS01275 PF00109 Beta-ketoacyl synthase, N-terminal domain CI104_RS01300 PF00535 Glycosyl transferase family 2 CI104_RS01320 PF00550 Phosphopantetheine attachment site CI104_RS01325 PF00550 Phosphopantetheine attachment site CI104_RS01350 PF01594 AI-2E family transporter CI104_RS01355 PF07690 Major Facilitator Superfamily CI104_RS01360 PF08786 DcrB CI104_RS01365 PF02592 Putative vitamin uptake transporter CI104_RS01370 PF01206 Sulfurtransferase TusA CI104_RS01375 PF00403 Heavy-metal-associated domain CI104_RS01380 PF07947 YhhN family CI104_RS01385 PF10694 Protein of unknown function (DUF2500) CI104_RS01390 PF06611 Protein of unknown function (DUF1145) CI104_RS01400 PF02881 SRP54-type protein, helical bundle domain CI104_RS01400 PF00448 SRP54-type protein, GTPase domain CI104_RS01405 PF00005 ABC transporter CI104_RS01410 PF18075 FtsX extracellular domain CI104_RS01410 PF02687 FtsX-like permease family CI104_RS01415 PF04545 Sigma-70, region 4 CI104_RS01415 PF04542 Sigma-70 region 2 CI104_RS01420 PF00202 Aminotransferase class-III CI104_RS01425 PF13458 Periplasmic binding protein CI104_RS01430 PF09972 Predicted membrane protein (DUF2207) CI104_RS01435 PF04011 LemA family CI104_RS01440 PF12568 Acetyltransferase (GNAT) domain, PanZ CI104_RS01445 PF13458 Periplasmic binding protein CI104_RS01450 PF02653 Branched-chain amino acid transport system / permease component CI104_RS01455 PF11862 Domain of unknown function (DUF3382) CI104_RS01455 PF02653 Branched-chain amino acid transport system / permease component CI104_RS01460 PF00005 ABC transporter CI104_RS01460 PF12399 Branched-chain amino acid ATP-binding cassette transporter CI104_RS01465 PF00005 ABC transporter CI104_RS01470 PF13416 Bacterial extracellular solute-binding protein CI104_RS01475 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS01480 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS01485 PF17912 MalK OB fold domain CI104_RS01485 PF00005 ABC transporter CI104_RS01490 PF03009 Glycerophosphoryl diester phosphodiesterase family CI104_RS01495 PF10956 Protein of unknown function (DUF2756) CI104_RS01505 PF00583 Acetyltransferase (GNAT) family CI104_RS01510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS01510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS01515 PF02678 Pirin CI104_RS01515 PF17954 Quercetinase C-terminal cupin domain CI104_RS01520 PF00356 Bacterial regulatory proteins, lacI family CI104_RS01520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS01525 PF01202 Shikimate kinase CI104_RS01530 PF02447 GntP family permease CI104_RS01535 PF01914 MarC family integral membrane protein CI104_RS01540 PF01118 Semialdehyde dehydrogenase, NAD binding domain CI104_RS01540 PF02774 Semialdehyde dehydrogenase, dimerisation domain CI104_RS01545 PF02806 Alpha amylase, C-terminal all-beta domain CI104_RS01545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CI104_RS01545 PF00128 Alpha amylase, catalytic domain CI104_RS01550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CI104_RS01550 PF18390 Glycogen debranching enzyme C-terminal domain CI104_RS01550 PF00128 Alpha amylase, catalytic domain CI104_RS01555 PF00483 Nucleotidyl transferase CI104_RS01560 PF00534 Glycosyl transferases group 1 CI104_RS01560 PF08323 Starch synthase catalytic domain CI104_RS01565 PF00343 Carbohydrate phosphorylase CI104_RS01570 PF09339 IclR helix-turn-helix domain CI104_RS01570 PF01614 Bacterial transcriptional regulator CI104_RS01575 PF00701 Dihydrodipicolinate synthetase family CI104_RS01580 PF00920 Dehydratase family CI104_RS01585 PF07690 Major Facilitator Superfamily CI104_RS01590 PF00465 Iron-containing alcohol dehydrogenase CI104_RS01595 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CI104_RS01595 PF01266 FAD dependent oxidoreductase CI104_RS01600 PF00581 Rhodanese-like domain CI104_RS01605 PF01694 Rhomboid family CI104_RS01605 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CI104_RS01610 PF08220 DeoR-like helix-turn-helix domain CI104_RS01610 PF00455 DeoR C terminal sensor domain CI104_RS01615 PF02803 Thiolase, C-terminal domain CI104_RS01615 PF00108 Thiolase, N-terminal domain CI104_RS01620 PF01144 Coenzyme A transferase CI104_RS01625 PF01144 Coenzyme A transferase CI104_RS01640 PF03600 Citrate transporter CI104_RS01650 PF17874 MalT-like TPR region CI104_RS01650 PF00196 Bacterial regulatory proteins, luxR family CI104_RS01655 PF00343 Carbohydrate phosphorylase CI104_RS01660 PF02446 4-alpha-glucanotransferase CI104_RS01665 PF02447 GntP family permease CI104_RS01670 PF01521 Iron-sulphur cluster biosynthesis CI104_RS01670 PF01106 NifU-like domain CI104_RS01675 PF00156 Phosphoribosyl transferase domain CI104_RS01680 PF00561 alpha/beta hydrolase fold CI104_RS01685 PF04754 Putative transposase, YhgA-like CI104_RS01690 PF09012 FeoC like transcriptional regulator CI104_RS01695 PF02421 Ferrous iron transport protein B CI104_RS01695 PF07664 Ferrous iron transport protein B C terminus CI104_RS01695 PF07670 Nucleoside recognition CI104_RS01695 PF17910 FeoB cytosolic helical domain CI104_RS01700 PF04023 FeoA domain CI104_RS01710 PF16921 Tex protein YqgF-like domain CI104_RS01710 PF17674 HHH domain CI104_RS01710 PF09371 Tex-like protein N-terminal domain CI104_RS01710 PF00575 S1 RNA binding domain CI104_RS01715 PF03449 Transcription elongation factor, N-terminal CI104_RS01715 PF01272 Transcription elongation factor, GreA/GreB, C-term CI104_RS01720 PF00486 Transcriptional regulatory protein, C terminal CI104_RS01720 PF00072 Response regulator receiver domain CI104_RS01725 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS01725 PF00672 HAMP domain CI104_RS01730 PF01293 Phosphoenolpyruvate carboxykinase CI104_RS01735 PF01430 Hsp33 protein CI104_RS01740 PF01479 S4 domain CI104_RS01745 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS01750 PF07095 Intracellular growth attenuator protein IgaA CI104_RS01755 PF00293 NUDIX domain CI104_RS01760 PF00912 Transglycosylase CI104_RS01760 PF00905 Penicillin binding protein transpeptidase domain CI104_RS01760 PF17092 Penicillin-binding protein OB-like domain CI104_RS01770 PF05137 Fimbrial assembly protein (PilN) CI104_RS01780 PF10748 DNA utilization proteins HofP CI104_RS01785 PF00263 Bacterial type II and III secretion system protein CI104_RS01785 PF03958 Bacterial type II/III secretion system short domain CI104_RS01790 PF01202 Shikimate kinase CI104_RS01795 PF01761 3-dehydroquinate synthase CI104_RS01800 PF05036 Sporulation related domain CI104_RS01805 PF02086 D12 class N6 adenine-specific DNA methyltransferase CI104_RS01810 PF00834 Ribulose-phosphate 3 epimerase family CI104_RS01815 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS01820 PF00579 tRNA synthetases class I (W and Y) CI104_RS01825 PF07702 UTRA domain CI104_RS01825 PF00392 Bacterial regulatory proteins, gntR family CI104_RS01830 PF00294 pfkB family carbohydrate kinase CI104_RS01835 PF01261 Xylose isomerase-like TIM barrel CI104_RS01840 PF01380 SIS domain CI104_RS01845 PF13520 Amino acid permease CI104_RS01850 PF13978 Protein of unknown function (DUF4223) CI104_RS01855 PF14824 Sirohaem biosynthesis protein central CI104_RS01855 PF10414 Sirohaem synthase dimerisation region CI104_RS01855 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS01860 PF01226 Formate/nitrite transporter CI104_RS01865 PF13806 Rieske-like [2Fe-2S] domain CI104_RS01870 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS01870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CI104_RS01870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CI104_RS01870 PF04324 BFD-like [2Fe-2S] binding domain CI104_RS01870 PF18267 Rubredoxin NAD+ reductase C-terminal domain CI104_RS01875 PF07690 Major Facilitator Superfamily CI104_RS01880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CI104_RS01885 PF10832 Protein of unknown function (DUF2559) CI104_RS01890 PF02661 Fic/DOC family CI104_RS01895 PF00117 Glutamine amidotransferase class-I CI104_RS01900 PF00202 Aminotransferase class-III CI104_RS01905 PF12805 FUSC-like inner membrane protein yccS CI104_RS01910 PF13545 Crp-like helix-turn-helix domain CI104_RS01910 PF00027 Cyclic nucleotide-binding domain CI104_RS01920 PF02566 OsmC-like protein CI104_RS01925 PF00485 Phosphoribulokinase / Uridine kinase family CI104_RS01930 PF06794 Uncharacterised protein family (UPF0270) CI104_RS01935 PF00561 alpha/beta hydrolase fold CI104_RS01940 PF12848 ABC transporter CI104_RS01940 PF00005 ABC transporter CI104_RS01950 PF02525 Flavodoxin-like fold CI104_RS01955 PF00999 Sodium/hydrogen exchanger family CI104_RS01955 PF02254 TrkA-N domain CI104_RS01960 PF09526 Probable metal-binding protein (DUF2387) CI104_RS01965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CI104_RS01970 PF04102 SlyX CI104_RS01975 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CI104_RS01975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CI104_RS01980 PF13309 HTH domain CI104_RS01980 PF08348 YheO-like PAS domain CI104_RS01985 PF02635 DsrE/DsrF-like family CI104_RS01990 PF02635 DsrE/DsrF-like family CI104_RS01995 PF04077 DsrH like protein CI104_RS02000 PF00164 Ribosomal protein S12/S23 CI104_RS02005 PF00177 Ribosomal protein S7p/S5e CI104_RS02010 PF14492 Elongation Factor G, domain II CI104_RS02010 PF03144 Elongation factor Tu domain 2 CI104_RS02010 PF00009 Elongation factor Tu GTP binding domain CI104_RS02010 PF00679 Elongation factor G C-terminus CI104_RS02010 PF03764 Elongation factor G, domain IV CI104_RS02015 PF00009 Elongation factor Tu GTP binding domain CI104_RS02015 PF03144 Elongation factor Tu domain 2 CI104_RS02015 PF03143 Elongation factor Tu C-terminal domain CI104_RS02025 PF04324 BFD-like [2Fe-2S] binding domain CI104_RS02030 PF00210 Ferritin-like domain CI104_RS02035 PF01478 Type IV leader peptidase family CI104_RS02040 PF00338 Ribosomal protein S10p/S20e CI104_RS02045 PF00297 Ribosomal protein L3 CI104_RS02050 PF00573 Ribosomal protein L4/L1 family CI104_RS02055 PF00276 Ribosomal protein L23 CI104_RS02060 PF03947 Ribosomal Proteins L2, C-terminal domain CI104_RS02060 PF00181 Ribosomal Proteins L2, RNA binding domain CI104_RS02065 PF00203 Ribosomal protein S19 CI104_RS02070 PF00237 Ribosomal protein L22p/L17e CI104_RS02075 PF07650 KH domain CI104_RS02075 PF00189 Ribosomal protein S3, C-terminal domain CI104_RS02080 PF00252 Ribosomal protein L16p/L10e CI104_RS02085 PF00831 Ribosomal L29 protein CI104_RS02090 PF00366 Ribosomal protein S17 CI104_RS02095 PF00238 Ribosomal protein L14p/L23e CI104_RS02100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CI104_RS02100 PF00467 KOW motif CI104_RS02105 PF00673 ribosomal L5P family C-terminus CI104_RS02105 PF00281 Ribosomal protein L5 CI104_RS02110 PF00253 Ribosomal protein S14p/S29e CI104_RS02115 PF00410 Ribosomal protein S8 CI104_RS02120 PF00347 Ribosomal protein L6 CI104_RS02125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CI104_RS02130 PF00333 Ribosomal protein S5, N-terminal domain CI104_RS02130 PF03719 Ribosomal protein S5, C-terminal domain CI104_RS02135 PF00327 Ribosomal protein L30p/L7e CI104_RS02140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CI104_RS02145 PF00344 SecY translocase CI104_RS02150 PF00444 Ribosomal protein L36 CI104_RS02155 PF00416 Ribosomal protein S13/S18 CI104_RS02160 PF00411 Ribosomal protein S11 CI104_RS02165 PF00163 Ribosomal protein S4/S9 N-terminal domain CI104_RS02165 PF01479 S4 domain CI104_RS02170 PF01000 RNA polymerase Rpb3/RpoA insert domain CI104_RS02170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CI104_RS02170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CI104_RS02175 PF01196 Ribosomal protein L17 CI104_RS02180 PF09350 Domain of unknown function (DUF1992) CI104_RS02185 PF13411 MerR HTH family regulatory protein CI104_RS02190 PF03889 Alternative ribosome-rescue factor A CI104_RS02195 PF01741 Large-conductance mechanosensitive channel, MscL CI104_RS02200 PF02080 TrkA-C domain CI104_RS02200 PF02254 TrkA-N domain CI104_RS02205 PF01029 NusB family CI104_RS02205 PF01189 16S rRNA methyltransferase RsmB/F CI104_RS02210 PF00551 Formyl transferase CI104_RS02210 PF02911 Formyl transferase, C-terminal domain CI104_RS02215 PF01327 Polypeptide deformylase CI104_RS02220 PF02481 DNA recombination-mediator protein A CI104_RS02220 PF17782 DprA winged helix domain CI104_RS02225 PF04361 Protein of unknown function (DUF494) CI104_RS02230 PF01396 Topoisomerase DNA binding C4 zinc finger CI104_RS02235 PF01300 Telomere recombination CI104_RS02240 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CI104_RS02240 PF08501 Shikimate dehydrogenase substrate binding domain CI104_RS02240 PF01488 Shikimate / quinate 5-dehydrogenase CI104_RS02245 PF07369 Protein of unknown function (DUF1488) CI104_RS02250 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS02290 PF00005 ABC transporter CI104_RS02295 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS02300 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS02305 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS02320 PF00873 AcrB/AcrD/AcrF family CI104_RS02325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS02325 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS02340 PF10831 Protein of unknown function (DUF2556) CI104_RS02345 PF01555 DNA methylase CI104_RS02350 PF02954 Bacterial regulatory protein, Fis family CI104_RS02355 PF01207 Dihydrouridine synthase (Dus) CI104_RS02360 PF00194 Eukaryotic-type carbonic anhydrase CI104_RS02370 PF00474 Sodium:solute symporter family CI104_RS02375 PF06196 Protein of unknown function (DUF997) CI104_RS02380 PF00294 pfkB family carbohydrate kinase CI104_RS02385 PF08220 DeoR-like helix-turn-helix domain CI104_RS02385 PF00455 DeoR C terminal sensor domain CI104_RS02390 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS02395 PF13407 Periplasmic binding protein domain CI104_RS02400 PF00005 ABC transporter CI104_RS02405 PF02653 Branched-chain amino acid transport system / permease component CI104_RS02410 PF00294 pfkB family carbohydrate kinase CI104_RS02420 PF02785 Biotin carboxylase C-terminal domain CI104_RS02420 PF00289 Biotin carboxylase, N-terminal domain CI104_RS02420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CI104_RS02425 PF00364 Biotin-requiring enzyme CI104_RS02435 PF01794 Ferric reductase like transmembrane component CI104_RS02440 PF00174 Oxidoreductase molybdopterin binding domain CI104_RS02445 PF00107 Zinc-binding dehydrogenase CI104_RS02445 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS02450 PF00563 EAL domain CI104_RS02450 PF17157 Gammaproteobacterial periplasmic sensor domain CI104_RS02450 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS02470 PF04085 rod shape-determining protein MreC CI104_RS02475 PF04093 rod shape-determining protein MreD CI104_RS02480 PF02545 Maf-like protein CI104_RS02485 PF10150 Ribonuclease E/G family CI104_RS02485 PF00575 S1 RNA binding domain CI104_RS02490 PF13502 AsmA-like C-terminal region CI104_RS02490 PF13116 Protein of unknown function CI104_RS02495 PF01523 Putative modulator of DNA gyrase CI104_RS02500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS02500 PF03466 LysR substrate binding domain CI104_RS02505 PF07869 Protein of unknown function (DUF1656) CI104_RS02510 PF13533 Biotin-lipoyl like CI104_RS02515 PF04632 Fusaric acid resistance protein family CI104_RS02520 PF00171 Aldehyde dehydrogenase family CI104_RS02525 PF01337 Barstar (barnase inhibitor) CI104_RS02530 PF07338 Protein of unknown function (DUF1471) CI104_RS02535 PF01316 Arginine repressor, DNA binding domain CI104_RS02535 PF02863 Arginine repressor, C-terminal domain CI104_RS02540 PF00056 lactate/malate dehydrogenase, NAD binding domain CI104_RS02540 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CI104_RS02545 PF13180 PDZ domain CI104_RS02550 PF13180 PDZ domain CI104_RS02550 PF00595 PDZ domain CI104_RS02555 PF06295 Protein of unknown function (DUF1043) CI104_RS02560 PF03969 AFG1-like ATPase CI104_RS02565 PF00572 Ribosomal protein L13 CI104_RS02570 PF00380 Ribosomal protein S9/S16 CI104_RS02585 PF00043 Glutathione S-transferase, C-terminal domain CI104_RS02585 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS02590 PF04386 Stringent starvation protein B CI104_RS02595 PF07729 FCD domain CI104_RS02595 PF00392 Bacterial regulatory proteins, gntR family CI104_RS02600 PF00701 Dihydrodipicolinate synthetase family CI104_RS02605 PF07690 Major Facilitator Superfamily CI104_RS02610 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CI104_RS02615 PF00480 ROK family CI104_RS02620 PF04074 YhcH/YjgK/YiaL CI104_RS02625 PF06250 YhcG PDDEXK nuclease domain CI104_RS02625 PF17761 DUF1016 N-terminal domain CI104_RS02630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CI104_RS02630 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS02635 PF01645 Conserved region in glutamate synthase CI104_RS02635 PF04898 Glutamate synthase central domain CI104_RS02635 PF00310 Glutamine amidotransferases class-II CI104_RS02635 PF01493 GXGXG motif CI104_RS02650 PF04055 Radical SAM superfamily CI104_RS02650 PF16199 Radical_SAM C-terminal domain CI104_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS02655 PF00989 PAS fold CI104_RS02655 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS02655 PF18415 Histidine kinase receptor ArcB trans-membrane domain CI104_RS02655 PF00072 Response regulator receiver domain CI104_RS02655 PF01627 Hpt domain CI104_RS02665 PF00912 Transglycosylase CI104_RS02670 PF10707 PhoP regulatory network protein YrbL CI104_RS02675 PF00381 PTS HPr component phosphorylation site CI104_RS02680 PF03668 P-loop ATPase protein family CI104_RS02685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS02690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CI104_RS02695 PF04552 Sigma-54, DNA binding domain CI104_RS02695 PF04963 Sigma-54 factor, core binding domain CI104_RS02695 PF00309 Sigma-54 factor, Activator interacting domain (AID) CI104_RS02700 PF00005 ABC transporter CI104_RS02700 PF12399 Branched-chain amino acid ATP-binding cassette transporter CI104_RS02705 PF03968 OstA-like protein CI104_RS02710 PF06835 Lipopolysaccharide-assembly, LptC-related CI104_RS02720 PF01380 SIS domain CI104_RS02720 PF00571 CBS domain CI104_RS02725 PF01699 Sodium/calcium exchanger protein CI104_RS02730 PF00005 ABC transporter CI104_RS02735 PF02405 Permease MlaE CI104_RS02740 PF02470 MlaD protein CI104_RS02745 PF05494 MlaC protein CI104_RS02750 PF13466 STAS domain CI104_RS02755 PF01722 BolA-like protein CI104_RS02760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CI104_RS02765 PF13693 Winged helix-turn-helix DNA-binding CI104_RS02770 PF00348 Polyprenyl synthetase CI104_RS02775 PF00829 Ribosomal prokaryotic L21 protein CI104_RS02780 PF01016 Ribosomal L27 protein CI104_RS02785 PF00892 EamA-like transporter family CI104_RS02790 PF01018 GTP1/OBG CI104_RS02790 PF01926 50S ribosome-binding GTPase CI104_RS02795 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CI104_RS02800 PF01272 Transcription elongation factor, GreA/GreB, C-term CI104_RS02800 PF03449 Transcription elongation factor, N-terminal CI104_RS02805 PF01985 CRS1 / YhbY (CRM) domain CI104_RS02810 PF01728 FtsJ-like methyltransferase CI104_RS02815 PF17862 AAA+ lid domain CI104_RS02815 PF01434 Peptidase family M41 CI104_RS02815 PF06480 FtsH Extracellular CI104_RS02815 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS02820 PF00809 Pterin binding enzyme CI104_RS02825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CI104_RS02825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CI104_RS02825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CI104_RS02825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CI104_RS02830 PF03840 Preprotein translocase SecG subunit CI104_RS02840 PF03466 LysR substrate binding domain CI104_RS02840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS02845 PF04303 PrpF protein CI104_RS02850 PF02585 GlcNAc-PI de-N-acetylase CI104_RS02855 PF04909 Amidohydrolase CI104_RS02860 PF00375 Sodium:dicarboxylate symporter family CI104_RS02865 PF03737 Aldolase/RraA CI104_RS02870 PF06178 Oligogalacturonate-specific porin protein (KdgM) CI104_RS02875 PF00764 Arginosuccinate synthase CI104_RS02885 PF02576 RimP N-terminal domain CI104_RS02885 PF17384 RimP C-terminal SH3 domain CI104_RS02890 PF13184 NusA-like KH domain CI104_RS02890 PF00575 S1 RNA binding domain CI104_RS02890 PF08529 NusA N-terminal domain CI104_RS02895 PF04760 Translation initiation factor IF-2, N-terminal region CI104_RS02895 PF00009 Elongation factor Tu GTP binding domain CI104_RS02895 PF08364 Bacterial translation initiation factor IF-2 associated region CI104_RS02895 PF11987 Translation-initiation factor 2 CI104_RS02900 PF02033 Ribosome-binding factor A CI104_RS02905 PF01509 TruB family pseudouridylate synthase (N terminal domain) CI104_RS02905 PF09157 Pseudouridine synthase II TruB, C-terminal CI104_RS02905 PF16198 tRNA pseudouridylate synthase B C-terminal domain CI104_RS02910 PF00312 Ribosomal protein S15 CI104_RS02915 PF00575 S1 RNA binding domain CI104_RS02915 PF01138 3' exoribonuclease family, domain 1 CI104_RS02915 PF03725 3' exoribonuclease family, domain 2 CI104_RS02915 PF00013 KH domain CI104_RS02915 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CI104_RS02920 PF07719 Tetratricopeptide repeat CI104_RS02920 PF13181 Tetratricopeptide repeat CI104_RS02925 PF00270 DEAD/DEAH box helicase CI104_RS02925 PF12343 Cold shock protein DEAD box A CI104_RS02925 PF03880 DbpA RNA binding domain CI104_RS02925 PF00271 Helicase conserved C-terminal domain CI104_RS02930 PF03222 Tryptophan/tyrosine permease family CI104_RS02935 PF00296 Luciferase-like monooxygenase CI104_RS02940 PF01136 Peptidase family U32 CI104_RS02945 PF01136 Peptidase family U32 CI104_RS02950 PF02036 SCP-2 sterol transfer family CI104_RS02955 PF13508 Acetyltransferase (GNAT) domain CI104_RS02960 PF01541 GIY-YIG catalytic domain CI104_RS02970 PF01965 DJ-1/PfpI family CI104_RS02975 PF13460 NAD(P)H-binding CI104_RS02980 PF03773 Predicted permease CI104_RS02985 PF04972 BON domain CI104_RS02990 PF13580 SIS domain CI104_RS02995 PF02021 Uncharacterised protein family UPF0102 CI104_RS03000 PF04348 LppC putative lipoprotein CI104_RS03005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS03010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CI104_RS03015 PF03613 PTS system mannose/fructose/sorbose family IID component CI104_RS03020 PF03609 PTS system sorbose-specific iic component CI104_RS03025 PF03830 PTS system sorbose subfamily IIB component CI104_RS03030 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS03035 PF01380 SIS domain CI104_RS03040 PF01979 Amidohydrolase family CI104_RS03045 PF03610 PTS system fructose IIA component CI104_RS03050 PF03613 PTS system mannose/fructose/sorbose family IID component CI104_RS03055 PF03609 PTS system sorbose-specific iic component CI104_RS03060 PF03830 PTS system sorbose subfamily IIB component CI104_RS03065 PF08013 Tagatose 6 phosphate kinase CI104_RS03075 PF08220 DeoR-like helix-turn-helix domain CI104_RS03075 PF00455 DeoR C terminal sensor domain CI104_RS03080 PF08220 DeoR-like helix-turn-helix domain CI104_RS03080 PF00455 DeoR C terminal sensor domain CI104_RS03085 PF00480 ROK family CI104_RS03090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS03090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS03095 PF17912 MalK OB fold domain CI104_RS03095 PF00005 ABC transporter CI104_RS03100 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS03105 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS03110 PF01547 Bacterial extracellular solute-binding protein CI104_RS03115 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CI104_RS03115 PF08666 SAF domain CI104_RS03120 PF07690 Major Facilitator Superfamily CI104_RS03125 PF03328 HpcH/HpaI aldolase/citrate lyase family CI104_RS03130 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CI104_RS03130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS03135 PF02595 Glycerate kinase family CI104_RS03145 PF03466 LysR substrate binding domain CI104_RS03145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS03150 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS03155 PF03222 Tryptophan/tyrosine permease family CI104_RS03160 PF00871 Acetokinase family CI104_RS03165 PF01228 Glycine radical CI104_RS03165 PF02901 Pyruvate formate lyase-like CI104_RS03170 PF03315 Serine dehydratase beta chain CI104_RS03170 PF03313 Serine dehydratase alpha chain CI104_RS03180 PF03313 Serine dehydratase alpha chain CI104_RS03190 PF17954 Quercetinase C-terminal cupin domain CI104_RS03190 PF02678 Pirin CI104_RS03195 PF03466 LysR substrate binding domain CI104_RS03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS03200 PF05656 Protein of unknown function (DUF805) CI104_RS03205 PF13409 Glutathione S-transferase, N-terminal domain CI104_RS03210 PF07681 DoxX CI104_RS03215 PF13997 YqjK-like protein CI104_RS03220 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CI104_RS03225 PF05957 Bacterial protein of unknown function (DUF883) CI104_RS03230 PF06476 Protein of unknown function (DUF1090) CI104_RS03235 PF13721 SecD export protein N-terminal TM region CI104_RS03240 PF09335 SNARE associated Golgi protein CI104_RS03245 PF00392 Bacterial regulatory proteins, gntR family CI104_RS03245 PF07729 FCD domain CI104_RS03250 PF07690 Major Facilitator Superfamily CI104_RS03255 PF02614 Glucuronate isomerase CI104_RS03260 PF08666 SAF domain CI104_RS03260 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CI104_RS03265 PF10688 Bacterial inner membrane protein CI104_RS03270 PF00375 Sodium:dicarboxylate symporter family CI104_RS03275 PF03741 Integral membrane protein TerC family CI104_RS03280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS03285 PF01863 Protein of unknown function DUF45 CI104_RS03290 PF05175 Methyltransferase small domain CI104_RS03300 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CI104_RS03305 PF01381 Helix-turn-helix CI104_RS03310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CI104_RS03310 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS03315 PF00005 ABC transporter CI104_RS03315 PF08402 TOBE domain CI104_RS03320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CI104_RS03320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CI104_RS03320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CI104_RS03320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CI104_RS03325 PF00356 Bacterial regulatory proteins, lacI family CI104_RS03330 PF01547 Bacterial extracellular solute-binding protein CI104_RS03335 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS03340 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS03345 PF00128 Alpha amylase, catalytic domain CI104_RS03350 PF04041 beta-1,4-mannooligosaccharide phosphorylase CI104_RS03355 PF01588 Putative tRNA binding domain CI104_RS03360 PF00202 Aminotransferase class-III CI104_RS03365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS03365 PF08447 PAS fold CI104_RS03370 PF00672 HAMP domain CI104_RS03370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS03370 PF02203 Tar ligand binding domain homologue CI104_RS03375 PF03551 Transcriptional regulator PadR-like family CI104_RS03380 PF08021 Siderophore-interacting FAD-binding domain CI104_RS03380 PF04954 Siderophore-interacting protein CI104_RS03385 PF08986 Domain of unknown function (DUF1889) CI104_RS03415 PF00589 Phage integrase family CI104_RS03415 PF02899 Phage integrase, N-terminal SAM-like domain CI104_RS03425 PF16452 Bacteriophage CI repressor C-terminal domain CI104_RS03425 PF07022 Bacteriophage CI repressor helix-turn-helix domain CI104_RS03435 PF06892 Phage regulatory protein CII (CP76) CI104_RS03445 PF17282 Family of unknown function (DUF5347) CI104_RS03455 PF01258 Prokaryotic dksA/traR C4-type zinc finger CI104_RS03460 PF02086 D12 class N6 adenine-specific DNA methyltransferase CI104_RS03465 PF05840 Bacteriophage replication gene A protein (GPA) CI104_RS03600 PF04984 Phage tail sheath protein subtilisin-like domain CI104_RS03600 PF17482 Phage tail sheath C-terminal domain CI104_RS03635 PF04606 Ogr/Delta-like zinc finger CI104_RS03645 PF03167 Uracil DNA glycosylase superfamily CI104_RS03650 PF07715 TonB-dependent Receptor Plug Domain CI104_RS03650 PF00593 TonB dependent receptor CI104_RS03660 PF03979 Sigma-70 factor, region 1.1 CI104_RS03660 PF00140 Sigma-70 factor, region 1.2 CI104_RS03660 PF04542 Sigma-70 region 2 CI104_RS03660 PF04539 Sigma-70 region 3 CI104_RS03660 PF04545 Sigma-70, region 4 CI104_RS03660 PF04546 Sigma-70, non-essential region CI104_RS03665 PF01807 CHC2 zinc finger CI104_RS03665 PF08275 DNA primase catalytic core, N-terminal domain CI104_RS03665 PF08278 DNA primase DnaG DnaB-binding CI104_RS03665 PF10410 DnaB-helicase binding domain of primase CI104_RS03670 PF01165 Ribosomal protein S21 CI104_RS03680 PF00814 Glycoprotease family CI104_RS03685 PF02492 CobW/HypB/UreG, nucleotide-binding domain CI104_RS03690 PF01730 UreF CI104_RS03695 PF02814 UreE urease accessory protein, N-terminal domain CI104_RS03695 PF05194 UreE urease accessory protein, C-terminal domain CI104_RS03700 PF01979 Amidohydrolase family CI104_RS03700 PF00449 Urease alpha-subunit, N-terminal domain CI104_RS03705 PF00699 Urease beta subunit CI104_RS03710 PF00547 Urease, gamma subunit CI104_RS03715 PF01774 UreD urease accessory protein CI104_RS03720 PF00939 Sodium:sulfate symporter transmembrane region CI104_RS03725 PF05683 Fumarase C-terminus CI104_RS03730 PF05681 Fumarate hydratase (Fumerase) CI104_RS03735 PF03466 LysR substrate binding domain CI104_RS03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS03740 PF02660 Glycerol-3-phosphate acyltransferase CI104_RS03745 PF02152 Dihydroneopterin aldolase CI104_RS03750 PF02673 Bacitracin resistance protein BacA CI104_RS03755 PF01966 HD domain CI104_RS03755 PF01743 Poly A polymerase head domain CI104_RS03755 PF12627 Probable RNA and SrmB- binding site of polymerase A CI104_RS03760 PF08239 Bacterial SH3 domain CI104_RS03770 PF01928 CYTH domain CI104_RS03775 PF08335 GlnD PII-uridylyltransferase CI104_RS03775 PF03710 Glutamate-ammonia ligase adenylyltransferase CI104_RS03780 PF01467 Cytidylyltransferase-like CI104_RS03780 PF00294 pfkB family carbohydrate kinase CI104_RS03785 PF08971 Glycogen synthesis protein CI104_RS03790 PF04380 Membrane fusogenic activity CI104_RS03795 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CI104_RS03805 PF02535 ZIP Zinc transporter CI104_RS03810 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CI104_RS03815 PF03738 Glutathionylspermidine synthase preATP-grasp CI104_RS03820 PF06693 Protein of unknown function (DUF1190) CI104_RS03830 PF02321 Outer membrane efflux protein CI104_RS03835 PF00293 NUDIX domain CI104_RS03840 PF06853 Protein of unknown function (DUF1249) CI104_RS03845 PF00149 Calcineurin-like phosphoesterase CI104_RS03850 PF05728 Uncharacterised protein family (UPF0227) CI104_RS03855 PF00986 DNA gyrase B subunit, carboxyl terminus CI104_RS03855 PF01751 Toprim domain CI104_RS03855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS03855 PF00204 DNA gyrase B CI104_RS03870 PF01306 LacY proton/sugar symporter CI104_RS03875 PF07470 Glycosyl Hydrolase Family 88 CI104_RS03880 PF00155 Aminotransferase class I and II CI104_RS03885 PF03992 Antibiotic biosynthesis monooxygenase CI104_RS03890 PF02525 Flavodoxin-like fold CI104_RS03895 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS03895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS03895 PF08521 Two-component sensor kinase N-terminal CI104_RS03900 PF00486 Transcriptional regulatory protein, C terminal CI104_RS03900 PF00072 Response regulator receiver domain CI104_RS03905 PF04076 Bacterial OB fold (BOF) protein CI104_RS03910 PF00521 DNA gyrase/topoisomerase IV, subunit A CI104_RS03910 PF03989 DNA gyrase C-terminal domain, beta-propeller CI104_RS03915 PF01553 Acyltransferase CI104_RS03920 PF07732 Multicopper oxidase CI104_RS03920 PF00394 Multicopper oxidase CI104_RS03920 PF07731 Multicopper oxidase CI104_RS03925 PF04055 Radical SAM superfamily CI104_RS03925 PF11842 Domain of unknown function (DUF3362) CI104_RS03925 PF08497 Radical SAM N-terminal CI104_RS03935 PF00248 Aldo/keto reductase family CI104_RS03940 PF00465 Iron-containing alcohol dehydrogenase CI104_RS03950 PF12833 Helix-turn-helix domain CI104_RS03950 PF06719 AraC-type transcriptional regulator N-terminus CI104_RS03955 PF09335 SNARE associated Golgi protein CI104_RS03960 PF01053 Cys/Met metabolism PLP-dependent enzyme CI104_RS03970 PF01618 MotA/TolQ/ExbB proton channel family CI104_RS03975 PF02472 Biopolymer transport protein ExbD/TolR CI104_RS03995 PF03350 Uncharacterized protein family, UPF0114 CI104_RS04000 PF00248 Aldo/keto reductase family CI104_RS04005 PF01738 Dienelactone hydrolase family CI104_RS04010 PF02203 Tar ligand binding domain homologue CI104_RS04010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS04010 PF00672 HAMP domain CI104_RS04015 PF11115 Protein of unknown function (DUF2623) CI104_RS04020 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CI104_RS04020 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CI104_RS04025 PF13247 4Fe-4S dicluster domain CI104_RS04030 PF03916 Polysulphide reductase, NrfD CI104_RS04035 PF00374 Nickel-dependent hydrogenase CI104_RS04040 PF01750 Hydrogenase maturation protease CI104_RS04045 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CI104_RS04050 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CI104_RS04055 PF01455 HupF/HypC family CI104_RS04060 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS04065 PF03738 Glutathionylspermidine synthase preATP-grasp CI104_RS04065 PF05257 CHAP domain CI104_RS04070 PF04198 Putative sugar-binding domain CI104_RS04080 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS04085 PF01008 Initiation factor 2 subunit family CI104_RS04090 PF01636 Phosphotransferase enzyme family CI104_RS04095 PF02369 Bacterial Ig-like domain (group 1) CI104_RS04095 PF11924 Inverse autotransporter, beta-domain CI104_RS04095 PF09134 Invasin, domain 3 CI104_RS04105 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS04105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS04115 PF04474 Protein of unknown function (DUF554) CI104_RS04125 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CI104_RS04125 PF01276 Orn/Lys/Arg decarboxylase, major domain CI104_RS04125 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CI104_RS04130 PF03825 Nucleoside H+ symporter CI104_RS04135 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CI104_RS04135 PF01464 Transglycosylase SLT domain CI104_RS04140 PF04362 Bacterial Fe(2+) trafficking CI104_RS04145 PF14815 NUDIX domain CI104_RS04145 PF00730 HhH-GPD superfamily base excision DNA repair protein CI104_RS04145 PF00633 Helix-hairpin-helix motif CI104_RS04145 PF10576 Iron-sulfur binding domain of endonuclease III CI104_RS04155 PF02390 Putative methyltransferase CI104_RS04160 PF04320 Protein with unknown function (DUF469) CI104_RS04165 PF11101 Protein of unknown function (DUF2884) CI104_RS04170 PF00710 Asparaginase, N-terminal CI104_RS04170 PF17763 Glutaminase/Asparaginase C-terminal domain CI104_RS04175 PF06969 HemN C-terminal domain CI104_RS04175 PF04055 Radical SAM superfamily CI104_RS04180 PF01725 Ham1 family CI104_RS04185 PF02594 Uncharacterised ACR, YggU family COG1872 CI104_RS04190 PF02325 YGGT family CI104_RS04195 PF01168 Alanine racemase, N-terminal domain CI104_RS04200 PF00437 Type II/IV secretion system protein CI104_RS04205 PF03652 Holliday junction resolvase CI104_RS04210 PF02622 Uncharacterized ACR, COG1678 CI104_RS04215 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CI104_RS04215 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CI104_RS04220 PF04452 RNA methyltransferase CI104_RS04225 PF04231 Endonuclease I CI104_RS04230 PF10263 SprT-like family CI104_RS04230 PF17283 SprT-like zinc ribbon domain CI104_RS04235 PF00083 Sugar (and other) transporter CI104_RS04240 PF02773 S-adenosylmethionine synthetase, C-terminal domain CI104_RS04240 PF00438 S-adenosylmethionine synthetase, N-terminal domain CI104_RS04240 PF02772 S-adenosylmethionine synthetase, central domain CI104_RS04250 PF17430 Uncharacterized YqgC-like CI104_RS04255 PF11036 Virulence promoting factor CI104_RS04260 PF17810 Arginine decarboxylase helical bundle domain CI104_RS04260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CI104_RS04260 PF17944 Arginine decarboxylase C-terminal helical extension CI104_RS04265 PF00491 Arginase family CI104_RS04270 PF01435 Peptidase family M48 CI104_RS04275 PF02780 Transketolase, C-terminal domain CI104_RS04275 PF02779 Transketolase, pyrimidine binding domain CI104_RS04275 PF00456 Transketolase, thiamine diphosphate binding domain CI104_RS04280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS04285 PF02378 Phosphotransferase system, EIIC CI104_RS04285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS04290 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS04290 PF00107 Zinc-binding dehydrogenase CI104_RS04295 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CI104_RS04300 PF05068 Mannitol repressor CI104_RS04310 PF00005 ABC transporter CI104_RS04315 PF00005 ABC transporter CI104_RS04335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CI104_RS04335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CI104_RS04340 PF00162 Phosphoglycerate kinase CI104_RS04345 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS04350 PF00696 Amino acid kinase family CI104_RS04355 PF07690 Major Facilitator Superfamily CI104_RS04360 PF02629 CoA binding domain CI104_RS04360 PF00549 CoA-ligase CI104_RS04365 PF06545 Protein of unknown function (DUF1116) CI104_RS04370 PF11392 Protein of unknown function (DUF2877) CI104_RS04375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS04375 PF03466 LysR substrate binding domain CI104_RS04380 PF00924 Mechanosensitive ion channel CI104_RS04380 PF05552 Conserved TM helix CI104_RS04385 PF01810 LysE type translocator CI104_RS04390 PF04402 Protein of unknown function (DUF541) CI104_RS04395 PF00005 ABC transporter CI104_RS04395 PF12848 ABC transporter CI104_RS04400 PF01464 Transglycosylase SLT domain CI104_RS04400 PF14718 Soluble lytic murein transglycosylase L domain CI104_RS04405 PF01371 Trp repressor protein CI104_RS04410 PF01931 Protein of unknown function DUF84 CI104_RS04415 PF00300 Histidine phosphatase superfamily (branch 1) CI104_RS04420 PF06445 GyrI-like small molecule binding domain CI104_RS04420 PF12833 Helix-turn-helix domain CI104_RS04425 PF05981 CreA protein CI104_RS04430 PF00486 Transcriptional regulatory protein, C terminal CI104_RS04430 PF00072 Response regulator receiver domain CI104_RS04435 PF00672 HAMP domain CI104_RS04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS04435 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS04440 PF06123 Inner membrane protein CreD CI104_RS04445 PF00072 Response regulator receiver domain CI104_RS04445 PF00486 Transcriptional regulatory protein, C terminal CI104_RS04455 PF00588 SpoU rRNA Methylase family CI104_RS04460 PF08254 Threonine leader peptide CI104_RS04465 PF03447 Homoserine dehydrogenase, NAD binding domain CI104_RS04465 PF00742 Homoserine dehydrogenase CI104_RS04465 PF00696 Amino acid kinase family CI104_RS04465 PF13840 ACT domain CI104_RS04465 PF01842 ACT domain CI104_RS04470 PF00288 GHMP kinases N terminal domain CI104_RS04470 PF08544 GHMP kinases C terminal CI104_RS04475 PF14821 Threonine synthase N terminus CI104_RS04475 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS04480 PF03883 Peroxide stress protein YaaA CI104_RS04485 PF01235 Sodium:alanine symporter family CI104_RS04490 PF00923 Transaldolase/Fructose-6-phosphate aldolase CI104_RS04495 PF00994 Probable molybdopterin binding domain CI104_RS04500 PF07690 Major Facilitator Superfamily CI104_RS04505 PF01184 GPR1/FUN34/yaaH family CI104_RS04510 PF00012 Hsp70 protein CI104_RS04515 PF00684 DnaJ central domain CI104_RS04515 PF01556 DnaJ C terminal domain CI104_RS04515 PF00226 DnaJ domain CI104_RS04520 PF06965 Na+/H+ antiporter 1 CI104_RS04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS04525 PF03466 LysR substrate binding domain CI104_RS04530 PF01649 Ribosomal protein S20 CI104_RS04540 PF01687 Riboflavin kinase CI104_RS04540 PF06574 FAD synthetase CI104_RS04545 PF08264 Anticodon-binding domain of tRNA CI104_RS04545 PF00133 tRNA synthetases class I (I, L, M and V) CI104_RS04545 PF06827 Zinc finger found in FPG and IleRS CI104_RS04550 PF01252 Signal peptidase (SPase) II CI104_RS04555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CI104_RS04560 PF02401 LytB protein CI104_RS04565 PF01156 Inosine-uridine preferring nucleoside hydrolase CI104_RS04570 PF06560 Glucose-6-phosphate isomerase (GPI) CI104_RS04580 PF03613 PTS system mannose/fructose/sorbose family IID component CI104_RS04585 PF03609 PTS system sorbose-specific iic component CI104_RS04590 PF03610 PTS system fructose IIA component CI104_RS04590 PF03830 PTS system sorbose subfamily IIB component CI104_RS04605 PF00356 Bacterial regulatory proteins, lacI family CI104_RS04605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS04610 PF05173 Dihydrodipicolinate reductase, C-terminus CI104_RS04610 PF01113 Dihydrodipicolinate reductase, N-terminus CI104_RS04615 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CI104_RS04615 PF00117 Glutamine amidotransferase class-I CI104_RS04620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CI104_RS04620 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CI104_RS04620 PF02142 MGS-like domain CI104_RS04625 PF07180 CaiF/GrlA transcriptional regulator CI104_RS04630 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS04635 PF00378 Enoyl-CoA hydratase/isomerase CI104_RS04640 PF00501 AMP-binding enzyme CI104_RS04640 PF13193 AMP-binding enzyme C-terminal domain CI104_RS04645 PF02515 CoA-transferase family III CI104_RS04650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CI104_RS04650 PF02770 Acyl-CoA dehydrogenase, middle domain CI104_RS04650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CI104_RS04655 PF02028 BCCT, betaine/carnitine/choline family transporter CI104_RS04660 PF01012 Electron transfer flavoprotein domain CI104_RS04665 PF01012 Electron transfer flavoprotein domain CI104_RS04665 PF00766 Electron transfer flavoprotein FAD-binding domain CI104_RS04670 PF01494 FAD binding domain CI104_RS04680 PF00083 Sugar (and other) transporter CI104_RS04685 PF06004 Bacterial protein of unknown function (DUF903) CI104_RS04690 PF02525 Flavodoxin-like fold CI104_RS04695 PF02254 TrkA-N domain CI104_RS04695 PF00999 Sodium/hydrogen exchanger family CI104_RS04705 PF00186 Dihydrofolate reductase CI104_RS04710 PF00149 Calcineurin-like phosphoesterase CI104_RS04715 PF04379 ApaG domain CI104_RS04720 PF00398 Ribosomal RNA adenine dimethylase CI104_RS04725 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CI104_RS04730 PF00639 PPIC-type PPIASE domain CI104_RS04730 PF09312 SurA N-terminal domain CI104_RS04735 PF04453 LPS transport system D CI104_RS04735 PF03968 OstA-like protein CI104_RS04740 PF00226 DnaJ domain CI104_RS04740 PF05099 Tellurite resistance protein TerB CI104_RS04745 PF00849 RNA pseudouridylate synthase CI104_RS04750 PF00176 SNF2 family N-terminal domain CI104_RS04750 PF12137 RNA polymerase recycling family C-terminal CI104_RS04750 PF18337 RapA N-terminal Tudor like domain CI104_RS04750 PF00271 Helicase conserved C-terminal domain CI104_RS04750 PF18339 RapA N-terminal Tudor like domain 1 CI104_RS04755 PF03104 DNA polymerase family B, exonuclease domain CI104_RS04755 PF00136 DNA polymerase family B CI104_RS04760 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS04765 PF02610 L-arabinose isomerase CI104_RS04765 PF11762 L-arabinose isomerase C-terminal domain CI104_RS04770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS04775 PF02311 AraC-like ligand binding domain CI104_RS04775 PF12833 Helix-turn-helix domain CI104_RS04780 PF09335 SNARE associated Golgi protein CI104_RS04785 PF00005 ABC transporter CI104_RS04790 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS04800 PF12793 Sugar transport-related sRNA regulator N-term CI104_RS04800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS04810 PF07690 Major Facilitator Superfamily CI104_RS04815 PF00694 Aconitase C-terminal domain CI104_RS04820 PF00330 Aconitase family (aconitate hydratase) CI104_RS04825 PF00180 Isocitrate/isopropylmalate dehydrogenase CI104_RS04830 PF00682 HMGL-like CI104_RS04830 PF08502 LeuA allosteric (dimerisation) domain CI104_RS04835 PF03466 LysR substrate binding domain CI104_RS04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS04840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CI104_RS04840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS04840 PF00205 Thiamine pyrophosphate enzyme, central domain CI104_RS04845 PF10369 Small subunit of acetolactate synthase CI104_RS04850 PF00356 Bacterial regulatory proteins, lacI family CI104_RS04850 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS04855 PF02381 MraZ protein, putative antitoxin-like CI104_RS04860 PF01795 MraW methylase family CI104_RS04865 PF04999 Cell division protein FtsL CI104_RS04870 PF03717 Penicillin-binding Protein dimerisation domain CI104_RS04870 PF00905 Penicillin binding protein transpeptidase domain CI104_RS04875 PF01225 Mur ligase family, catalytic domain CI104_RS04875 PF08245 Mur ligase middle domain CI104_RS04875 PF02875 Mur ligase family, glutamate ligase domain CI104_RS04880 PF08245 Mur ligase middle domain CI104_RS04880 PF02875 Mur ligase family, glutamate ligase domain CI104_RS04880 PF01225 Mur ligase family, catalytic domain CI104_RS04885 PF00953 Glycosyl transferase family 4 CI104_RS04885 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CI104_RS04890 PF02875 Mur ligase family, glutamate ligase domain CI104_RS04890 PF08245 Mur ligase middle domain CI104_RS04895 PF01098 Cell cycle protein CI104_RS04900 PF04101 Glycosyltransferase family 28 C-terminal domain CI104_RS04900 PF03033 Glycosyltransferase family 28 N-terminal domain CI104_RS04905 PF08245 Mur ligase middle domain CI104_RS04905 PF02875 Mur ligase family, glutamate ligase domain CI104_RS04905 PF01225 Mur ligase family, catalytic domain CI104_RS04910 PF07478 D-ala D-ala ligase C-terminus CI104_RS04910 PF01820 D-ala D-ala ligase N-terminus CI104_RS04915 PF03799 Cell division protein FtsQ CI104_RS04915 PF08478 POTRA domain, FtsQ-type CI104_RS04920 PF02491 SHS2 domain inserted in FTSA CI104_RS04925 PF12327 FtsZ family, C-terminal domain CI104_RS04925 PF00091 Tubulin/FtsZ family, GTPase domain CI104_RS04930 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CI104_RS04935 PF06558 Secretion monitor precursor protein (SecM) CI104_RS04940 PF02810 SEC-C motif CI104_RS04940 PF07517 SecA DEAD-like domain CI104_RS04940 PF07516 SecA Wing and Scaffold domain CI104_RS04940 PF01043 SecA preprotein cross-linking domain CI104_RS04945 PF00293 NUDIX domain CI104_RS04950 PF03884 DNA gyrase inhibitor YacG CI104_RS04955 PF07072 Cell division protein CI104_RS04960 PF01121 Dephospho-CoA kinase CI104_RS04965 PF00478 IMP dehydrogenase / GMP reductase domain CI104_RS04970 PF00482 Type II secretion system (T2SS), protein F CI104_RS04975 PF00437 Type II/IV secretion system protein CI104_RS04975 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CI104_RS04980 PF07963 Prokaryotic N-terminal methylation motif CI104_RS04985 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CI104_RS04985 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CI104_RS04990 PF01510 N-acetylmuramoyl-L-alanine amidase CI104_RS04995 PF17113 Regulatory signalling modulator protein AmpE CI104_RS05000 PF00324 Amino acid permease CI104_RS05005 PF00392 Bacterial regulatory proteins, gntR family CI104_RS05005 PF07729 FCD domain CI104_RS05010 PF00456 Transketolase, thiamine diphosphate binding domain CI104_RS05010 PF17831 Pyruvate dehydrogenase E1 component middle domain CI104_RS05015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CI104_RS05015 PF00364 Biotin-requiring enzyme CI104_RS05015 PF02817 e3 binding domain CI104_RS05020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CI104_RS05020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS05030 PF11737 Protein of unknown function (DUF3300) CI104_RS05035 PF06434 Aconitate hydratase 2 N-terminus CI104_RS05035 PF00330 Aconitase family (aconitate hydratase) CI104_RS05035 PF11791 Aconitate B N-terminal domain CI104_RS05040 PF06062 Uncharacterised protein family (UPF0231) CI104_RS05045 PF03812 2-keto-3-deoxygluconate permease CI104_RS05050 PF07005 Sugar-binding N-terminal domain CI104_RS05050 PF17042 Nucleotide-binding C-terminal domain CI104_RS05055 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CI104_RS05060 PF00455 DeoR C terminal sensor domain CI104_RS05060 PF08220 DeoR-like helix-turn-helix domain CI104_RS05065 PF10820 Protein of unknown function (DUF2543) CI104_RS05070 PF02675 S-adenosylmethionine decarboxylase CI104_RS05075 PF17284 Spermidine synthase tetramerisation domain CI104_RS05080 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CI104_RS05085 PF00394 Multicopper oxidase CI104_RS05085 PF07732 Multicopper oxidase CI104_RS05085 PF07731 Multicopper oxidase CI104_RS05095 PF12708 Pectate lyase superfamily protein CI104_RS05095 PF04650 YSIRK type signal peptide CI104_RS05095 PF13229 Right handed beta helix region CI104_RS05100 PF01011 PQQ enzyme repeat CI104_RS05105 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CI104_RS05105 PF17287 POTRA domain CI104_RS05105 PF08479 POTRA domain, ShlB-type CI104_RS05110 PF05860 haemagglutination activity domain CI104_RS05110 PF13332 Hemagglutinin repeat CI104_RS05110 PF13018 Extended Signal Peptide of Type V secretion system CI104_RS05110 PF04829 Pre-toxin domain with VENN motif CI104_RS05115 PF00156 Phosphoribosyl transferase domain CI104_RS05120 PF00484 Carbonic anhydrase CI104_RS05125 PF00005 ABC transporter CI104_RS05130 PF01061 ABC-2 type transporter CI104_RS05135 PF03610 PTS system fructose IIA component CI104_RS05140 PF01522 Polysaccharide deacetylase CI104_RS05145 PF02261 Aspartate decarboxylase CI104_RS05150 PF02569 Pantoate-beta-alanine ligase CI104_RS05155 PF02548 Ketopantoate hydroxymethyltransferase CI104_RS05160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CI104_RS05165 PF12627 Probable RNA and SrmB- binding site of polymerase A CI104_RS05165 PF12626 Polymerase A arginine-rich C-terminus CI104_RS05165 PF01743 Poly A polymerase head domain CI104_RS05170 PF00749 tRNA synthetases class I (E and Q), catalytic domain CI104_RS05175 PF01258 Prokaryotic dksA/traR C4-type zinc finger CI104_RS05180 PF17746 SfsA N-terminal OB domain CI104_RS05180 PF03749 Sugar fermentation stimulation protein RE domain CI104_RS05185 PF02834 LigT like Phosphoesterase CI104_RS05190 PF00270 DEAD/DEAH box helicase CI104_RS05190 PF04408 Helicase associated domain (HA2) CI104_RS05190 PF08482 ATP-dependent helicase C-terminal CI104_RS05190 PF00271 Helicase conserved C-terminal domain CI104_RS05195 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CI104_RS05195 PF00912 Transglycosylase CI104_RS05195 PF14814 Bifunctional transglycosylase second domain CI104_RS05195 PF00905 Penicillin binding protein transpeptidase domain CI104_RS05200 PF07715 TonB-dependent Receptor Plug Domain CI104_RS05200 PF00593 TonB dependent receptor CI104_RS05205 PF00005 ABC transporter CI104_RS05210 PF01497 Periplasmic binding protein CI104_RS05215 PF01032 FecCD transport family CI104_RS05220 PF00202 Aminotransferase class-III CI104_RS05225 PF00654 Voltage gated chloride channel CI104_RS05230 PF01521 Iron-sulphur cluster biosynthesis CI104_RS05235 PF03458 UPF0126 domain CI104_RS05240 PF01497 Periplasmic binding protein CI104_RS05245 PF01048 Phosphorylase superfamily CI104_RS05250 PF01966 HD domain CI104_RS05255 PF00595 PDZ domain CI104_RS05260 PF17853 GGDEF-like domain CI104_RS05260 PF05651 Putative sugar diacid recognition CI104_RS05260 PF13556 PucR C-terminal helix-turn-helix domain CI104_RS05265 PF11944 Protein of unknown function (DUF3461) CI104_RS05270 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS05270 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CI104_RS05270 PF14602 Hexapeptide repeat of succinyl-transferase CI104_RS05275 PF01842 ACT domain CI104_RS05275 PF08335 GlnD PII-uridylyltransferase CI104_RS05275 PF01966 HD domain CI104_RS05275 PF01909 Nucleotidyltransferase domain CI104_RS05280 PF00557 Metallopeptidase family M24 CI104_RS05290 PF00318 Ribosomal protein S2 CI104_RS05300 PF00889 Elongation factor TS CI104_RS05305 PF00696 Amino acid kinase family CI104_RS05310 PF01765 Ribosome recycling factor CI104_RS05315 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CI104_RS05315 PF13288 DXP reductoisomerase C-terminal domain CI104_RS05315 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CI104_RS05320 PF01255 Putative undecaprenyl diphosphate synthase CI104_RS05330 PF17820 PDZ domain CI104_RS05330 PF02163 Peptidase family M50 CI104_RS05335 PF07244 Surface antigen variable number repeat CI104_RS05335 PF01103 Surface antigen CI104_RS05340 PF03938 Outer membrane protein (OmpH-like) CI104_RS05345 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS05345 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CI104_RS05350 PF07977 FabA-like domain CI104_RS05355 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CI104_RS05355 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS05360 PF02684 Lipid-A-disaccharide synthetase CI104_RS05365 PF01351 Ribonuclease HII CI104_RS05370 PF02811 PHP domain CI104_RS05370 PF01336 OB-fold nucleic acid binding domain CI104_RS05370 PF14579 Helix-hairpin-helix motif CI104_RS05370 PF07733 Bacterial DNA polymerase III alpha NTPase domain CI104_RS05370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CI104_RS05375 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CI104_RS05380 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CI104_RS05380 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CI104_RS05380 PF01276 Orn/Lys/Arg decarboxylase, major domain CI104_RS05385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CI104_RS05390 PF01171 PP-loop family CI104_RS05390 PF09179 TilS substrate binding domain CI104_RS05390 PF11734 TilS substrate C-terminal domain CI104_RS05395 PF07073 Modulator of Rho-dependent transcription termination (ROF) CI104_RS05400 PF06786 Uncharacterised protein family (UPF0253) CI104_RS05405 PF07152 YaeQ protein CI104_RS05410 PF00472 RF-1 domain CI104_RS05415 PF17185 NlpE C-terminal OB domain CI104_RS05415 PF04170 NlpE N-terminal domain CI104_RS05420 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CI104_RS05425 PF04073 Aminoacyl-tRNA editing domain CI104_RS05425 PF03129 Anticodon binding domain CI104_RS05425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CI104_RS05430 PF18389 TrmO C-terminal domain CI104_RS05430 PF01980 tRNA-methyltransferase O CI104_RS05435 PF16358 RcsF lipoprotein CI104_RS05440 PF03180 NLPA lipoprotein CI104_RS05445 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS05450 PF00005 ABC transporter CI104_RS05450 PF09383 NIL domain CI104_RS05485 PF00248 Aldo/keto reductase family CI104_RS05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS05490 PF03466 LysR substrate binding domain CI104_RS05495 PF07690 Major Facilitator Superfamily CI104_RS05500 PF03372 Endonuclease/Exonuclease/phosphatase family CI104_RS05505 PF08241 Methyltransferase domain CI104_RS05510 PF01464 Transglycosylase SLT domain CI104_RS05510 PF01476 LysM domain CI104_RS05515 PF00753 Metallo-beta-lactamase superfamily CI104_RS05515 PF16123 Hydroxyacylglutathione hydrolase C-terminus CI104_RS05520 PF08241 Methyltransferase domain CI104_RS05525 PF00075 RNase H CI104_RS05530 PF00929 Exonuclease CI104_RS05550 PF05947 Type VI secretion system, TssF CI104_RS05555 PF04965 Gene 25-like lysozyme CI104_RS05570 PF17871 AAA lid domain CI104_RS05570 PF07724 AAA domain (Cdc48 subfamily) CI104_RS05570 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS05570 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS05575 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CI104_RS05580 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CI104_RS05620 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CI104_RS05625 PF13505 Outer membrane protein beta-barrel domain CI104_RS05625 PF00691 OmpA family CI104_RS05640 PF06761 Intracellular multiplication and human macrophage-killing CI104_RS05640 PF06744 Type VI secretion protein IcmF C-terminal CI104_RS05640 PF14331 ImcF-related N-terminal domain CI104_RS05675 PF04717 Type VI secretion system, phage-baseplate injector CI104_RS05675 PF06715 Gp5 C-terminal repeat (3 copies) CI104_RS05685 PF03527 RHS protein CI104_RS05685 PF14220 Domain of unknown function (DUF4329) CI104_RS05685 PF05593 RHS Repeat CI104_RS05705 PF00795 Carbon-nitrogen hydrolase CI104_RS05710 PF09317 Domain of unknown function (DUF1974) CI104_RS05710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CI104_RS05710 PF02770 Acyl-CoA dehydrogenase, middle domain CI104_RS05710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CI104_RS05715 PF13580 SIS domain CI104_RS05720 PF13230 Glutamine amidotransferases class-II CI104_RS05725 PF03734 L,D-transpeptidase catalytic domain CI104_RS05730 PF00877 NlpC/P60 family CI104_RS05740 PF00771 FHIPEP family CI104_RS05745 PF13677 Membrane MotB of proton-channel complex MotA/MotB CI104_RS05745 PF00691 OmpA family CI104_RS05750 PF11798 IMS family HHH motif CI104_RS05750 PF11799 impB/mucB/samB family C-terminal domain CI104_RS05750 PF00817 impB/mucB/samB family CI104_RS05755 PF01546 Peptidase family M20/M25/M40 CI104_RS05755 PF07687 Peptidase dimerisation domain CI104_RS05760 PF00156 Phosphoribosyl transferase domain CI104_RS05765 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CI104_RS05770 PF07417 Sigma factor-binding transcriptional regulator Crl CI104_RS05775 PF00267 Gram-negative porin CI104_RS05780 PF01472 PUA domain CI104_RS05780 PF00696 Amino acid kinase family CI104_RS05785 PF00171 Aldehyde dehydrogenase family CI104_RS05795 PF01709 Transcriptional regulator CI104_RS05805 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS05805 PF17155 Gammaproteobacterial periplasmic sensor domain CI104_RS05830 PF01156 Inosine-uridine preferring nucleoside hydrolase CI104_RS05840 PF13649 Methyltransferase domain CI104_RS05845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS05845 PF03466 LysR substrate binding domain CI104_RS05855 PF00854 POT family CI104_RS05865 PF01810 LysE type translocator CI104_RS05870 PF03797 Autotransporter beta-domain CI104_RS05875 PF03797 Autotransporter beta-domain CI104_RS05880 PF07338 Protein of unknown function (DUF1471) CI104_RS05885 PF00158 Sigma-54 interaction domain CI104_RS05885 PF06506 Propionate catabolism activator CI104_RS05885 PF02954 Bacterial regulatory protein, Fis family CI104_RS05895 PF00285 Citrate synthase, C-terminal domain CI104_RS05900 PF03972 MmgE/PrpD family CI104_RS05905 PF16177 Acetyl-coenzyme A synthetase N-terminus CI104_RS05905 PF00501 AMP-binding enzyme CI104_RS05905 PF13193 AMP-binding enzyme C-terminal domain CI104_RS05920 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CI104_RS05920 PF02837 Glycosyl hydrolases family 2, sugar binding domain CI104_RS05920 PF00703 Glycosyl hydrolases family 2 CI104_RS05920 PF16353 Domain of unknown function(DUF4981) CI104_RS05920 PF02929 Beta galactosidase small chain CI104_RS05925 PF01965 DJ-1/PfpI family CI104_RS05930 PF12706 Beta-lactamase superfamily domain CI104_RS05935 PF03797 Autotransporter beta-domain CI104_RS05935 PF12951 Passenger-associated-transport-repeat CI104_RS05940 PF08402 TOBE domain CI104_RS05940 PF00005 ABC transporter CI104_RS05945 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS05955 PF07690 Major Facilitator Superfamily CI104_RS05960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS05960 PF07730 Histidine kinase CI104_RS05960 PF05231 MASE1 CI104_RS05965 PF00196 Bacterial regulatory proteins, luxR family CI104_RS05965 PF00072 Response regulator receiver domain CI104_RS05975 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CI104_RS05980 PF00005 ABC transporter CI104_RS05985 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS05990 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CI104_RS06000 PF00490 Delta-aminolevulinic acid dehydratase CI104_RS06005 PF03212 Pertactin CI104_RS06005 PF03797 Autotransporter beta-domain CI104_RS06010 PF15977 Winged helix-turn-helix DNA binding CI104_RS06015 PF00144 Beta-lactamase CI104_RS06025 PF05992 SbmA/BacA-like family CI104_RS06030 PF07759 Protein of unknown function (DUF1615) CI104_RS06035 PF10954 Protein of unknown function (DUF2755) CI104_RS06040 PF10953 Protein of unknown function (DUF2754) CI104_RS06045 PF07478 D-ala D-ala ligase C-terminus CI104_RS06045 PF01820 D-ala D-ala ligase N-terminus CI104_RS06055 PF07690 Major Facilitator Superfamily CI104_RS06060 PF10796 Sigma-S stabilisation anti-adaptor protein CI104_RS06065 PF00245 Alkaline phosphatase CI104_RS06070 PF07769 psiF repeat CI104_RS06075 PF05230 MASE2 domain CI104_RS06075 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS06080 PF03807 NADP oxidoreductase coenzyme F420-dependent CI104_RS06080 PF14748 Pyrroline-5-carboxylate reductase dimerisation CI104_RS06085 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CI104_RS06090 PF01202 Shikimate kinase CI104_RS06095 PF16362 YaiA protein CI104_RS06100 PF07302 AroM protein CI104_RS06105 PF06865 Pyrimidine/purine nucleoside phosphorylase CI104_RS06110 PF04381 Putative exonuclease, RdgC CI104_RS06115 PF00480 ROK family CI104_RS06120 PF13476 AAA domain CI104_RS06125 PF12320 Type 5 capsule protein repressor C-terminal domain CI104_RS06125 PF00149 Calcineurin-like phosphoesterase CI104_RS06130 PF00072 Response regulator receiver domain CI104_RS06130 PF00486 Transcriptional regulatory protein, C terminal CI104_RS06135 PF00989 PAS fold CI104_RS06135 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS06135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS06135 PF11808 Phosphate regulon sensor protein PhoR CI104_RS06140 PF05525 Branched-chain amino acid transport protein CI104_RS06145 PF00324 Amino acid permease CI104_RS06150 PF00128 Alpha amylase, catalytic domain CI104_RS06150 PF02903 Alpha amylase, N-terminal ig-like domain CI104_RS06155 PF03466 LysR substrate binding domain CI104_RS06155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS06160 PF00857 Isochorismatase family CI104_RS06170 PF07969 Amidohydrolase family CI104_RS06185 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS06190 PF00294 pfkB family carbohydrate kinase CI104_RS06195 PF03611 PTS system sugar-specific permease component CI104_RS06205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS06210 PF10417 C-terminal domain of 1-Cys peroxiredoxin CI104_RS06210 PF00578 AhpC/TSA family CI104_RS06215 PF04336 Acyl carrier protein phosphodiesterase CI104_RS06220 PF02547 Queuosine biosynthesis protein CI104_RS06225 PF01702 Queuine tRNA-ribosyltransferase CI104_RS06230 PF02699 Preprotein translocase subunit CI104_RS06235 PF13721 SecD export protein N-terminal TM region CI104_RS06235 PF02355 Protein export membrane protein CI104_RS06235 PF07549 SecD/SecF GG Motif CI104_RS06240 PF02355 Protein export membrane protein CI104_RS06240 PF07549 SecD/SecF GG Motif CI104_RS06255 PF03502 Nucleoside-specific channel-forming protein, Tsx CI104_RS06260 PF11622 Protein of unknown function (DUF3251) CI104_RS06265 PF03477 ATP cone domain CI104_RS06270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CI104_RS06270 PF01872 RibD C-terminal domain CI104_RS06275 PF00885 6,7-dimethyl-8-ribityllumazine synthase CI104_RS06280 PF01029 NusB family CI104_RS06285 PF02769 AIR synthase related protein, C-terminal domain CI104_RS06285 PF00586 AIR synthase related protein, N-terminal domain CI104_RS06290 PF04608 Phosphatidylglycerophosphatase A CI104_RS06295 PF00248 Aldo/keto reductase family CI104_RS06300 PF02779 Transketolase, pyrimidine binding domain CI104_RS06300 PF02780 Transketolase, C-terminal domain CI104_RS06300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CI104_RS06305 PF00348 Polyprenyl synthetase CI104_RS06310 PF02609 Exonuclease VII small subunit CI104_RS06315 PF02568 Thiamine biosynthesis protein (ThiI) CI104_RS06315 PF02926 THUMP domain CI104_RS06325 PF00384 Molybdopterin oxidoreductase CI104_RS06325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS06325 PF01568 Molydopterin dinucleotide binding domain CI104_RS06330 PF13247 4Fe-4S dicluster domain CI104_RS06330 PF12800 4Fe-4S binding domain CI104_RS06340 PF01965 DJ-1/PfpI family CI104_RS06345 PF02558 Ketopantoate reductase PanE/ApbA CI104_RS06345 PF08546 Ketopantoate reductase PanE/ApbA C terminal CI104_RS06350 PF04461 Protein of unknown function (DUF520) CI104_RS06355 PF07690 Major Facilitator Superfamily CI104_RS06370 PF01040 UbiA prenyltransferase family CI104_RS06375 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CI104_RS06380 PF00510 Cytochrome c oxidase subunit III CI104_RS06385 PF00115 Cytochrome C and Quinol oxidase polypeptide I CI104_RS06390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CI104_RS06390 PF06481 COX Aromatic Rich Motif CI104_RS06395 PF07690 Major Facilitator Superfamily CI104_RS06400 PF03923 Uncharacterized lipoprotein CI104_RS06400 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CI104_RS06405 PF01722 BolA-like protein CI104_RS06415 PF05697 Bacterial trigger factor protein (TF) CI104_RS06415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CI104_RS06415 PF05698 Bacterial trigger factor protein (TF) C-terminus CI104_RS06420 PF00574 Clp protease CI104_RS06425 PF07724 AAA domain (Cdc48 subfamily) CI104_RS06425 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS06425 PF06689 ClpX C4-type zinc finger CI104_RS06430 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS06430 PF05362 Lon protease (S16) C-terminal proteolytic domain CI104_RS06430 PF02190 ATP-dependent protease La (LON) substrate-binding domain CI104_RS06435 PF00216 Bacterial DNA-binding protein CI104_RS06440 PF13145 PPIC-type PPIASE domain CI104_RS06455 PF06508 Queuosine biosynthesis protein QueC CI104_RS06460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS06460 PF12793 Sugar transport-related sRNA regulator N-term CI104_RS06470 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS06475 PF01037 Lrp/AsnC ligand binding domain CI104_RS06475 PF13404 AsnC-type helix-turn-helix domain CI104_RS06480 PF00664 ABC transporter transmembrane region CI104_RS06480 PF00005 ABC transporter CI104_RS06485 PF00664 ABC transporter transmembrane region CI104_RS06485 PF00005 ABC transporter CI104_RS06490 PF00543 Nitrogen regulatory protein P-II CI104_RS06495 PF00909 Ammonium Transporter Family CI104_RS06505 PF09619 Type III secretion system lipoprotein chaperone (YscW) CI104_RS06510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CI104_RS06530 PF00392 Bacterial regulatory proteins, gntR family CI104_RS06530 PF00155 Aminotransferase class I and II CI104_RS06540 PF07237 Protein of unknown function (DUF1428) CI104_RS06545 PF00563 EAL domain CI104_RS06545 PF12792 CSS motif domain associated with EAL CI104_RS06550 PF00444 Ribosomal protein L36 CI104_RS06555 PF10777 Inner membrane protein YlaC CI104_RS06560 PF14602 Hexapeptide repeat of succinyl-transferase CI104_RS06560 PF12464 Maltose acetyltransferase CI104_RS06565 PF05321 Haemolysin expression modulating protein CI104_RS06570 PF10757 Biofilm formation regulator YbaJ CI104_RS06575 PF00873 AcrB/AcrD/AcrF family CI104_RS06580 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS06580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS06585 PF00440 Bacterial regulatory proteins, tetR family CI104_RS06585 PF08361 MAATS-type transcriptional repressor, C-terminal region CI104_RS06595 PF00924 Mechanosensitive ion channel CI104_RS06595 PF12795 Mechanosensitive ion channel porin domain CI104_RS06595 PF12794 Mechanosensitive ion channel inner membrane domain 1 CI104_RS06600 PF10689 Protein of unknown function (DUF2496) CI104_RS06605 PF07445 Primosomal replication protein priC CI104_RS06610 PF04304 Protein of unknown function (DUF454) CI104_RS06615 PF00156 Phosphoribosyl transferase domain CI104_RS06620 PF12169 DNA polymerase III subunits gamma and tau domain III CI104_RS06620 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CI104_RS06620 PF12170 DNA polymerase III tau subunit V interacting with alpha CI104_RS06625 PF02575 YbaB/EbfC DNA-binding family CI104_RS06630 PF02132 RecR protein CI104_RS06630 PF13662 Toprim domain CI104_RS06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS06635 PF00183 Hsp90 protein CI104_RS06645 PF05191 Adenylate kinase, active site lid CI104_RS06655 PF00762 Ferrochelatase CI104_RS06660 PF07859 alpha/beta hydrolase fold CI104_RS06665 PF00294 pfkB family carbohydrate kinase CI104_RS06670 PF02254 TrkA-N domain CI104_RS06670 PF00999 Sodium/hydrogen exchanger family CI104_RS06675 PF07690 Major Facilitator Superfamily CI104_RS06680 PF02872 5'-nucleotidase, C-terminal domain CI104_RS06680 PF00149 Calcineurin-like phosphoesterase CI104_RS06685 PF04073 Aminoacyl-tRNA editing domain CI104_RS06690 PF01963 TraB family CI104_RS06695 PF00403 Heavy-metal-associated domain CI104_RS06720 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS06725 PF07484 Phage Tail Collar Domain CI104_RS06725 PF03335 Phage tail fibre repeat CI104_RS06725 PF08400 Prophage tail fibre N-terminal CI104_RS06835 PF05840 Bacteriophage replication gene A protein (GPA) CI104_RS06845 PF02086 D12 class N6 adenine-specific DNA methyltransferase CI104_RS06870 PF00589 Phage integrase family CI104_RS06870 PF02899 Phage integrase, N-terminal SAM-like domain CI104_RS06875 PF02308 MgtC family CI104_RS06880 PF01156 Inosine-uridine preferring nucleoside hydrolase CI104_RS06885 PF00356 Bacterial regulatory proteins, lacI family CI104_RS06890 PF00083 Sugar (and other) transporter CI104_RS06890 PF07690 Major Facilitator Superfamily CI104_RS06895 PF13411 MerR HTH family regulatory protein CI104_RS06910 PF01957 NfeD-like C-terminal, partner-binding CI104_RS06915 PF01145 SPFH domain / Band 7 family CI104_RS06915 PF16200 C-terminal region of band_7 CI104_RS06920 PF00005 ABC transporter CI104_RS06925 PF03649 Uncharacterised protein family (UPF0014) CI104_RS06930 PF00085 Thioredoxin CI104_RS06935 PF00106 short chain dehydrogenase CI104_RS06940 PF13472 GDSL-like Lipase/Acylhydrolase family CI104_RS06945 PF00005 ABC transporter CI104_RS06965 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CI104_RS06965 PF02222 ATP-grasp domain CI104_RS06970 PF00731 AIR carboxylase CI104_RS06980 PF12850 Calcineurin-like phosphoesterase superfamily domain CI104_RS06985 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CI104_RS06990 PF01406 tRNA synthetases class I (C) catalytic domain CI104_RS06990 PF09190 DALR domain CI104_RS06995 PF04307 LexA-binding, inner membrane-associated putative hydrolase CI104_RS07010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CI104_RS07010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CI104_RS07015 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS07015 PF00356 Bacterial regulatory proteins, lacI family CI104_RS07020 PF00367 phosphotransferase system, EIIB CI104_RS07020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CI104_RS07020 PF02378 Phosphotransferase system, EIIC CI104_RS07030 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CI104_RS07030 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CI104_RS07050 PF00672 HAMP domain CI104_RS07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS07050 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS07055 PF00486 Transcriptional regulatory protein, C terminal CI104_RS07055 PF00072 Response regulator receiver domain CI104_RS07060 PF02321 Outer membrane efflux protein CI104_RS07065 PF11604 Copper binding periplasmic protein CusF CI104_RS07070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS07070 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS07075 PF00873 AcrB/AcrD/AcrF family CI104_RS07085 PF17874 MalT-like TPR region CI104_RS07085 PF00196 Bacterial regulatory proteins, luxR family CI104_RS07090 PF12951 Passenger-associated-transport-repeat CI104_RS07110 PF00593 TonB dependent receptor CI104_RS07110 PF07715 TonB-dependent Receptor Plug Domain CI104_RS07115 PF00324 Amino acid permease CI104_RS07120 PF03825 Nucleoside H+ symporter CI104_RS07135 PF00356 Bacterial regulatory proteins, lacI family CI104_RS07140 PF00924 Mechanosensitive ion channel CI104_RS07145 PF00881 Nitroreductase family CI104_RS07150 PF04237 YjbR CI104_RS07155 PF00440 Bacterial regulatory proteins, tetR family CI104_RS07155 PF16295 Tetracyclin repressor-like, C-terminal domain CI104_RS07160 PF12706 Beta-lactamase superfamily domain CI104_RS07165 PF12833 Helix-turn-helix domain CI104_RS07170 PF06643 Protein of unknown function (DUF1158) CI104_RS07175 PF04107 Glutamate-cysteine ligase family 2(GCS2) CI104_RS07185 PF05199 GMC oxidoreductase CI104_RS07185 PF00732 GMC oxidoreductase CI104_RS07190 PF00171 Aldehyde dehydrogenase family CI104_RS07195 PF00440 Bacterial regulatory proteins, tetR family CI104_RS07195 PF13977 BetI-type transcriptional repressor, C-terminal CI104_RS07205 PF02028 BCCT, betaine/carnitine/choline family transporter CI104_RS07215 PF01848 Hok/gef family CI104_RS07230 PF02653 Branched-chain amino acid transport system / permease component CI104_RS07235 PF00005 ABC transporter CI104_RS07245 PF13407 Periplasmic binding protein domain CI104_RS07250 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS07250 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS07255 PF04198 Putative sugar-binding domain CI104_RS07255 PF00325 Bacterial regulatory proteins, crp family CI104_RS07260 PF00456 Transketolase, thiamine diphosphate binding domain CI104_RS07265 PF02780 Transketolase, C-terminal domain CI104_RS07265 PF02779 Transketolase, pyrimidine binding domain CI104_RS07270 PF01648 4'-phosphopantetheinyl transferase superfamily CI104_RS07270 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CI104_RS07275 PF00593 TonB dependent receptor CI104_RS07275 PF07715 TonB-dependent Receptor Plug Domain CI104_RS07285 PF00756 Putative esterase CI104_RS07285 PF11806 Domain of unknown function (DUF3327) CI104_RS07290 PF03621 MbtH-like protein CI104_RS07295 PF00501 AMP-binding enzyme CI104_RS07295 PF00975 Thioesterase domain CI104_RS07295 PF00668 Condensation domain CI104_RS07295 PF00550 Phosphopantetheine attachment site CI104_RS07295 PF13193 AMP-binding enzyme C-terminal domain CI104_RS07300 PF02706 Chain length determinant protein CI104_RS07305 PF00005 ABC transporter CI104_RS07310 PF01032 FecCD transport family CI104_RS07315 PF01032 FecCD transport family CI104_RS07320 PF05977 Transmembrane secretion effector CI104_RS07325 PF01497 Periplasmic binding protein CI104_RS07330 PF00425 chorismate binding enzyme CI104_RS07335 PF00501 AMP-binding enzyme CI104_RS07335 PF13193 AMP-binding enzyme C-terminal domain CI104_RS07340 PF00857 Isochorismatase family CI104_RS07340 PF00550 Phosphopantetheine attachment site CI104_RS07350 PF03061 Thioesterase superfamily CI104_RS07355 PF02554 Carbon starvation protein CstA CI104_RS07355 PF13722 5TM C-terminal transporter carbon starvation CstA CI104_RS07360 PF04328 Selenoprotein, putative CI104_RS07365 PF02195 ParB-like nuclease domain CI104_RS07370 PF01507 Phosphoadenosine phosphosulfate reductase family CI104_RS07370 PF11922 Domain of unknown function (DUF3440) CI104_RS07375 PF13098 Thioredoxin-like domain CI104_RS07380 PF10417 C-terminal domain of 1-Cys peroxiredoxin CI104_RS07380 PF00578 AhpC/TSA family CI104_RS07385 PF13192 Thioredoxin domain CI104_RS07385 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS07390 PF00582 Universal stress protein family CI104_RS07400 PF01272 Transcription elongation factor, GreA/GreB, C-term CI104_RS07400 PF14760 Rnk N-terminus CI104_RS07405 PF00561 alpha/beta hydrolase fold CI104_RS07410 PF01613 Flavin reductase like domain CI104_RS07415 PF00445 Ribonuclease T2 family CI104_RS07420 PF00939 Sodium:sulfate symporter transmembrane region CI104_RS07425 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CI104_RS07430 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CI104_RS07435 PF04223 Citrate lyase, alpha subunit (CitF) CI104_RS07440 PF03328 HpcH/HpaI aldolase/citrate lyase family CI104_RS07445 PF06857 Malonate decarboxylase delta subunit (MdcD) CI104_RS07450 PF08218 Citrate lyase ligase C-terminal domain CI104_RS07455 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CI104_RS07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS07455 PF00989 PAS fold CI104_RS07455 PF17203 Single cache domain 3 CI104_RS07460 PF12431 Transcriptional regulator CI104_RS07460 PF00072 Response regulator receiver domain CI104_RS07465 PF03606 C4-dicarboxylate anaerobic carrier CI104_RS07470 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CI104_RS07475 PF00313 'Cold-shock' DNA-binding domain CI104_RS07480 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CI104_RS07485 PF00795 Carbon-nitrogen hydrolase CI104_RS07490 PF02416 mttA/Hcf106 family CI104_RS07495 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CI104_RS07495 PF04055 Radical SAM superfamily CI104_RS07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS07500 PF03466 LysR substrate binding domain CI104_RS07505 PF03099 Biotin/lipoate A/B protein ligase family CI104_RS07510 PF04359 Protein of unknown function (DUF493) CI104_RS07515 PF07943 Penicillin-binding protein 5, C-terminal domain CI104_RS07515 PF00768 D-alanyl-D-alanine carboxypeptidase CI104_RS07520 PF03330 Lytic transglycolase CI104_RS07520 PF05036 Sporulation related domain CI104_RS07525 PF01098 Cell cycle protein CI104_RS07530 PF03717 Penicillin-binding Protein dimerisation domain CI104_RS07530 PF00905 Penicillin binding protein transpeptidase domain CI104_RS07535 PF02590 Predicted SPOUT methyltransferase CI104_RS07545 PF00300 Histidine phosphatase superfamily (branch 1) CI104_RS07550 PF00155 Aminotransferase class I and II CI104_RS07555 PF01467 Cytidylyltransferase-like CI104_RS07560 PF06144 DNA polymerase III, delta subunit CI104_RS07560 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CI104_RS07565 PF04390 Lipopolysaccharide-assembly CI104_RS07570 PF08264 Anticodon-binding domain of tRNA CI104_RS07570 PF00133 tRNA synthetases class I (I, L, M and V) CI104_RS07570 PF13603 Leucyl-tRNA synthetase, Domain 2 CI104_RS07575 PF07295 Zinc-ribbon containing domain CI104_RS07580 PF01156 Inosine-uridine preferring nucleoside hydrolase CI104_RS07585 PF00005 ABC transporter CI104_RS07590 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS07595 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS07600 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS07605 PF00795 Carbon-nitrogen hydrolase CI104_RS07610 PF03471 Transporter associated domain CI104_RS07610 PF00571 CBS domain CI104_RS07615 PF02130 Uncharacterized protein family UPF0054 CI104_RS07620 PF02562 PhoH-like protein CI104_RS07625 PF00919 Uncharacterized protein family UPF0004 CI104_RS07625 PF01938 TRAM domain CI104_RS07625 PF04055 Radical SAM superfamily CI104_RS07630 PF01494 FAD binding domain CI104_RS07670 PF13537 Glutamine amidotransferase domain CI104_RS07670 PF00733 Asparagine synthase CI104_RS07680 PF13344 Haloacid dehalogenase-like hydrolase CI104_RS07685 PF01047 MarR family CI104_RS07685 PF00480 ROK family CI104_RS07690 PF01979 Amidohydrolase family CI104_RS07695 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CI104_RS07705 PF02378 Phosphotransferase system, EIIC CI104_RS07705 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CI104_RS07705 PF00367 phosphotransferase system, EIIB CI104_RS07710 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CI104_RS07710 PF00749 tRNA synthetases class I (E and Q), catalytic domain CI104_RS07715 PF03573 outer membrane porin, OprD family CI104_RS07720 PF13982 YbfN-like lipoprotein CI104_RS07725 PF07690 Major Facilitator Superfamily CI104_RS07735 PF00890 FAD binding domain CI104_RS07735 PF14537 Cytochrome c3 CI104_RS07740 PF03466 LysR substrate binding domain CI104_RS07740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS07745 PF01475 Ferric uptake regulator family CI104_RS07750 PF00258 Flavodoxin CI104_RS07755 PF01402 Ribbon-helix-helix protein, copG family CI104_RS07760 PF12697 Alpha/beta hydrolase family CI104_RS07765 PF17206 SeqA protein N-terminal domain CI104_RS07765 PF03925 SeqA protein C-terminal domain CI104_RS07770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CI104_RS07770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CI104_RS07770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CI104_RS07770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CI104_RS07775 PF13520 Amino acid permease CI104_RS07780 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CI104_RS07780 PF01276 Orn/Lys/Arg decarboxylase, major domain CI104_RS07780 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CI104_RS07785 PF00072 Response regulator receiver domain CI104_RS07785 PF00486 Transcriptional regulatory protein, C terminal CI104_RS07790 PF13493 Domain of unknown function (DUF4118) CI104_RS07790 PF13492 GAF domain CI104_RS07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS07790 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS07790 PF02702 Osmosensitive K+ channel His kinase sensor domain CI104_RS07795 PF02669 K+-transporting ATPase, c chain CI104_RS07805 PF03814 Potassium-transporting ATPase A subunit CI104_RS07810 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CI104_RS07815 PF10725 Protein of unknown function (DUF2517) CI104_RS07820 PF08349 Protein of unknown function (DUF1722) CI104_RS07825 PF03441 FAD binding domain of DNA photolyase CI104_RS07825 PF00875 DNA photolyase CI104_RS07830 PF01784 NIF3 (NGG1p interacting factor 3) CI104_RS07835 PF02682 Carboxyltransferase domain, subdomain C and D CI104_RS07840 PF02626 Carboxyltransferase domain, subdomain A and B CI104_RS07845 PF03746 LamB/YcsF family CI104_RS07860 PF01470 Pyroglutamyl peptidase CI104_RS07865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CI104_RS07865 PF06827 Zinc finger found in FPG and IleRS CI104_RS07865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CI104_RS07870 PF05145 Transition state regulatory protein AbrB CI104_RS07875 PF00285 Citrate synthase, C-terminal domain CI104_RS07890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CI104_RS07895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CI104_RS07900 PF02910 Fumarate reductase flavoprotein C-term CI104_RS07900 PF00890 FAD binding domain CI104_RS07905 PF13085 2Fe-2S iron-sulfur cluster binding domain CI104_RS07910 PF16078 2-oxoglutarate dehydrogenase N-terminus CI104_RS07910 PF16870 2-oxoglutarate dehydrogenase C-terminal CI104_RS07910 PF02779 Transketolase, pyrimidine binding domain CI104_RS07910 PF00676 Dehydrogenase E1 component CI104_RS07915 PF00364 Biotin-requiring enzyme CI104_RS07915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CI104_RS07915 PF02817 e3 binding domain CI104_RS07920 PF00549 CoA-ligase CI104_RS07920 PF08442 ATP-grasp domain CI104_RS07925 PF02629 CoA binding domain CI104_RS07925 PF00549 CoA-ligase CI104_RS07935 PF03928 Haem-degrading CI104_RS07945 PF05853 beta-keto acid cleavage enzyme CI104_RS07950 PF01261 Xylose isomerase-like TIM barrel CI104_RS07955 PF08220 DeoR-like helix-turn-helix domain CI104_RS07955 PF00455 DeoR C terminal sensor domain CI104_RS07960 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS07965 PF07005 Sugar-binding N-terminal domain CI104_RS07965 PF17042 Nucleotide-binding C-terminal domain CI104_RS07970 PF12833 Helix-turn-helix domain CI104_RS07970 PF10114 Sensory domain found in PocR CI104_RS07975 PF10414 Sirohaem synthase dimerisation region CI104_RS07975 PF14824 Sirohaem biosynthesis protein central CI104_RS07975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS07980 PF03466 LysR substrate binding domain CI104_RS07980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS07985 PF12557 Cob(I)alamin adenosyltransferase N terminal CI104_RS07985 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CI104_RS07990 PF05681 Fumarate hydratase (Fumerase) CI104_RS07990 PF05683 Fumarase C-terminus CI104_RS07995 PF04960 Glutaminase CI104_RS08000 PF00375 Sodium:dicarboxylate symporter family CI104_RS08015 PF07476 Methylaspartate ammonia-lyase C-terminus CI104_RS08015 PF05034 Methylaspartate ammonia-lyase N-terminus CI104_RS08020 PF06368 Methylaspartate mutase E chain (MutE) CI104_RS08025 PF13941 MutL protein CI104_RS08030 PF02310 B12 binding domain CI104_RS08035 PF01654 Cytochrome bd terminal oxidase subunit I CI104_RS08040 PF02322 Cytochrome bd terminal oxidase subunit II CI104_RS08045 PF08173 Membrane bound YbgT-like protein CI104_RS08050 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CI104_RS08055 PF03061 Thioesterase superfamily CI104_RS08060 PF01618 MotA/TolQ/ExbB proton channel family CI104_RS08065 PF02472 Biopolymer transport protein ExbD/TolR CI104_RS08070 PF06519 TolA C-terminal CI104_RS08075 PF07676 WD40-like Beta Propeller Repeat CI104_RS08075 PF04052 TolB amino-terminal domain CI104_RS08080 PF00691 OmpA family CI104_RS08085 PF16331 TolA binding protein trimerisation CI104_RS08085 PF13174 Tetratricopeptide repeat CI104_RS08125 PF02445 Quinolinate synthetase A protein CI104_RS08130 PF04973 Nicotinamide mononucleotide transporter CI104_RS08135 PF01545 Cation efflux family CI104_RS08140 PF13985 YbgS-like protein CI104_RS08145 PF00793 DAHP synthetase I family CI104_RS08150 PF01032 FecCD transport family CI104_RS08155 PF00005 ABC transporter CI104_RS08160 PF00300 Histidine phosphatase superfamily (branch 1) CI104_RS08170 PF01263 Aldose 1-epimerase CI104_RS08175 PF10509 Galactokinase galactose-binding signature CI104_RS08175 PF00288 GHMP kinases N terminal domain CI104_RS08175 PF08544 GHMP kinases C terminal CI104_RS08180 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CI104_RS08180 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CI104_RS08185 PF16363 GDP-mannose 4,6 dehydratase CI104_RS08190 PF00005 ABC transporter CI104_RS08195 PF03459 TOBE domain CI104_RS08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS08200 PF10766 Multidrug efflux pump-associated protein AcrZ CI104_RS08210 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08215 PF03459 TOBE domain CI104_RS08215 PF00005 ABC transporter CI104_RS08225 PF10282 Lactonase, 7-bladed beta-propeller CI104_RS08230 PF01095 Pectinesterase CI104_RS08235 PF01979 Amidohydrolase family CI104_RS08240 PF00491 Arginase family CI104_RS08245 PF00392 Bacterial regulatory proteins, gntR family CI104_RS08245 PF07702 UTRA domain CI104_RS08250 PF01175 Urocanase Rossmann-like domain CI104_RS08250 PF17392 Urocanase C-terminal domain CI104_RS08250 PF17391 Urocanase N-terminal domain CI104_RS08255 PF00221 Aromatic amino acid lyase CI104_RS08260 PF01161 Phosphatidylethanolamine-binding protein CI104_RS08265 PF00202 Aminotransferase class-III CI104_RS08270 PF06968 Biotin and Thiamin Synthesis associated domain CI104_RS08270 PF04055 Radical SAM superfamily CI104_RS08275 PF00155 Aminotransferase class I and II CI104_RS08280 PF08241 Methyltransferase domain CI104_RS08295 PF17757 UvrB interaction domain CI104_RS08295 PF12344 Ultra-violet resistance protein B CI104_RS08295 PF02151 UvrB/uvrC motif CI104_RS08295 PF04851 Type III restriction enzyme, res subunit CI104_RS08295 PF00271 Helicase conserved C-terminal domain CI104_RS08300 PF01933 Uncharacterised protein family UPF0052 CI104_RS08305 PF06463 Molybdenum Cofactor Synthesis C CI104_RS08305 PF04055 Radical SAM superfamily CI104_RS08310 PF00994 Probable molybdopterin binding domain CI104_RS08315 PF01967 MoaC family CI104_RS08320 PF02597 ThiS family CI104_RS08325 PF02391 MoaE protein CI104_RS08330 PF01027 Inhibitor of apoptosis-promoting Bax1 CI104_RS08335 PF03706 Lysylphosphatidylglycerol synthase TM region CI104_RS08340 PF13091 PLD-like domain CI104_RS08345 PF03372 Endonuclease/Exonuclease/phosphatase family CI104_RS08350 PF11076 Putative inner membrane protein YbhQ CI104_RS08365 PF00005 ABC transporter CI104_RS08370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS08375 PF09209 Tetracyclin repressor-like, C-terminal domain CI104_RS08375 PF00440 Bacterial regulatory proteins, tetR family CI104_RS08380 PF00271 Helicase conserved C-terminal domain CI104_RS08380 PF00270 DEAD/DEAH box helicase CI104_RS08395 PF07702 UTRA domain CI104_RS08395 PF00392 Bacterial regulatory proteins, gntR family CI104_RS08400 PF00206 Lyase CI104_RS08400 PF10397 Adenylosuccinate lyase C-terminus CI104_RS08405 PF00939 Sodium:sulfate symporter transmembrane region CI104_RS08410 PF00270 DEAD/DEAH box helicase CI104_RS08410 PF06733 DEAD_2 CI104_RS08410 PF13307 Helicase C-terminal domain CI104_RS08415 PF02885 Glycosyl transferase family, helical bundle domain CI104_RS08420 PF07338 Protein of unknown function (DUF1471) CI104_RS08430 PF01258 Prokaryotic dksA/traR C4-type zinc finger CI104_RS08435 PF07338 Protein of unknown function (DUF1471) CI104_RS08440 PF05971 RNA methyltransferase CI104_RS08445 PF00924 Mechanosensitive ion channel CI104_RS08450 PF00005 ABC transporter CI104_RS08455 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08460 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS08465 PF00210 Ferritin-like domain CI104_RS08470 PF00892 EamA-like transporter family CI104_RS08475 PF13505 Outer membrane protein beta-barrel domain CI104_RS08480 PF00884 Sulfatase CI104_RS08495 PF01325 Iron dependent repressor, N-terminal DNA binding domain CI104_RS08495 PF02742 Iron dependent repressor, metal binding and dimerisation domain CI104_RS08500 PF03600 Citrate transporter CI104_RS08505 PF00873 AcrB/AcrD/AcrF family CI104_RS08515 PF17969 L,D-transpeptidase C-terminal domain CI104_RS08515 PF03734 L,D-transpeptidase catalytic domain CI104_RS08520 PF00005 ABC transporter CI104_RS08520 PF12848 ABC transporter CI104_RS08525 PF07350 Protein of unknown function (DUF1479) CI104_RS08535 PF03797 Autotransporter beta-domain CI104_RS08545 PF02901 Pyruvate formate lyase-like CI104_RS08545 PF01228 Glycine radical CI104_RS08550 PF04055 Radical SAM superfamily CI104_RS08555 PF00923 Transaldolase/Fructose-6-phosphate aldolase CI104_RS08560 PF00899 ThiF family CI104_RS08565 PF00994 Probable molybdopterin binding domain CI104_RS08565 PF03454 MoeA C-terminal region (domain IV) CI104_RS08565 PF03453 MoeA N-terminal region (domain I and II) CI104_RS08570 PF01112 Asparaginase CI104_RS08575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS08575 PF00005 ABC transporter CI104_RS08580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS08585 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08590 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS08590 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08595 PF04055 Radical SAM superfamily CI104_RS08595 PF18693 TRAM domain CI104_RS08595 PF00919 Uncharacterized protein family UPF0004 CI104_RS08600 PF10799 Biofilm formation protein (YliH/bssR) CI104_RS08605 PF07995 Glucose / Sorbosone dehydrogenase CI104_RS08615 PF13417 Glutathione S-transferase, N-terminal domain CI104_RS08615 PF00043 Glutathione S-transferase, C-terminal domain CI104_RS08620 PF00768 D-alanyl-D-alanine carboxypeptidase CI104_RS08620 PF07943 Penicillin-binding protein 5, C-terminal domain CI104_RS08625 PF00455 DeoR C terminal sensor domain CI104_RS08625 PF08220 DeoR-like helix-turn-helix domain CI104_RS08630 PF01569 PAP2 superfamily CI104_RS08635 PF07690 Major Facilitator Superfamily CI104_RS08645 PF07690 Major Facilitator Superfamily CI104_RS08650 PF00440 Bacterial regulatory proteins, tetR family CI104_RS08655 PF05638 Type VI secretion system effector, Hcp CI104_RS08670 PF02080 TrkA-C domain CI104_RS08670 PF06826 Predicted Permease Membrane Region CI104_RS08680 PF11045 Putative inner membrane protein of Enterobacteriaceae CI104_RS08685 PF00462 Glutaredoxin CI104_RS08690 PF07214 Protein of unknown function (DUF1418) CI104_RS08695 PF00881 Nitroreductase family CI104_RS08700 PF08443 RimK-like ATP-grasp domain CI104_RS08700 PF18030 RimK PreATP-grasp domain CI104_RS08705 PF10722 Putative bacterial sensory transduction regulator CI104_RS08710 PF13416 Bacterial extracellular solute-binding protein CI104_RS08715 PF00005 ABC transporter CI104_RS08715 PF08402 TOBE domain CI104_RS08720 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08725 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08730 PF10767 Protein of unknown function (DUF2593) CI104_RS08735 PF05958 tRNA (Uracil-5-)-methyltransferase CI104_RS08740 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS08745 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08750 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS08755 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS08760 PF00005 ABC transporter CI104_RS08765 PF12883 Protein of unknown function (DUF3828) CI104_RS08770 PF01906 Putative heavy-metal-binding CI104_RS08775 PF01510 N-acetylmuramoyl-L-alanine amidase CI104_RS08780 PF01370 NAD dependent epimerase/dehydratase family CI104_RS08785 PF13460 NAD(P)H-binding CI104_RS08785 PF11066 Protein of unknown function (DUF2867) CI104_RS08790 PF01212 Beta-eliminating lyase CI104_RS08795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CI104_RS08795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS08795 PF00205 Thiamine pyrophosphate enzyme, central domain CI104_RS08805 PF00970 Oxidoreductase FAD-binding domain CI104_RS08805 PF00175 Oxidoreductase NAD-binding domain CI104_RS08805 PF00111 2Fe-2S iron-sulfur cluster binding domain CI104_RS08810 PF03063 Prismane/CO dehydrogenase family CI104_RS08815 PF03956 Lysine exporter LysO CI104_RS08820 PF00230 Major intrinsic protein CI104_RS08825 PF11398 Protein of unknown function (DUF2813) CI104_RS08830 PF04393 Protein of unknown function (DUF535) CI104_RS08835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS08840 PF02687 FtsX-like permease family CI104_RS08840 PF12704 MacB-like periplasmic core domain CI104_RS08840 PF00005 ABC transporter CI104_RS08845 PF00313 'Cold-shock' DNA-binding domain CI104_RS08850 PF02617 ATP-dependent Clp protease adaptor protein ClpS CI104_RS08855 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS08855 PF07724 AAA domain (Cdc48 subfamily) CI104_RS08855 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS08855 PF17871 AAA lid domain CI104_RS08855 PF02861 Clp amino terminal domain, pathogenicity island component CI104_RS08880 PF01176 Translation initiation factor 1A / IF-1 CI104_RS08890 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CI104_RS08895 PF00005 ABC transporter CI104_RS08895 PF00664 ABC transporter transmembrane region CI104_RS08900 PF00664 ABC transporter transmembrane region CI104_RS08900 PF00005 ABC transporter CI104_RS08905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS08915 PF01037 Lrp/AsnC ligand binding domain CI104_RS08920 PF17854 FtsK alpha domain CI104_RS08920 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CI104_RS08920 PF09397 Ftsk gamma domain CI104_RS08920 PF01580 FtsK/SpoIIIE family CI104_RS08925 PF03548 Outer membrane lipoprotein carrier protein LolA CI104_RS08930 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS08930 PF12002 MgsA AAA+ ATPase C terminal CI104_RS08930 PF16193 AAA C-terminal domain CI104_RS08935 PF02403 Seryl-tRNA synthetase N-terminal domain CI104_RS08935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CI104_RS08940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS08940 PF00384 Molybdopterin oxidoreductase CI104_RS08940 PF01568 Molydopterin dinucleotide binding domain CI104_RS08945 PF12800 4Fe-4S binding domain CI104_RS08945 PF13247 4Fe-4S dicluster domain CI104_RS08950 PF04976 DMSO reductase anchor subunit (DmsC) CI104_RS08955 PF00857 Isochorismatase family CI104_RS08965 PF07690 Major Facilitator Superfamily CI104_RS08970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS08975 PF02780 Transketolase, C-terminal domain CI104_RS08975 PF02779 Transketolase, pyrimidine binding domain CI104_RS08975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CI104_RS08980 PF00456 Transketolase, thiamine diphosphate binding domain CI104_RS08980 PF02779 Transketolase, pyrimidine binding domain CI104_RS08980 PF02780 Transketolase, C-terminal domain CI104_RS08990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS08995 PF01418 Helix-turn-helix domain, rpiR family CI104_RS08995 PF01380 SIS domain CI104_RS09000 PF04055 Radical SAM superfamily CI104_RS09005 PF01228 Glycine radical CI104_RS09005 PF02901 Pyruvate formate lyase-like CI104_RS09010 PF01226 Formate/nitrite transporter CI104_RS09015 PF18381 YcaO cyclodehydratase C-terminal domain CI104_RS09015 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CI104_RS09020 PF04239 Protein of unknown function (DUF421) CI104_RS09025 PF00266 Aminotransferase class-V CI104_RS09030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CI104_RS09040 PF02224 Cytidylate kinase CI104_RS09045 PF00575 S1 RNA binding domain CI104_RS09050 PF00216 Bacterial DNA-binding protein CI104_RS09055 PF00753 Metallo-beta-lactamase superfamily CI104_RS09055 PF03772 Competence protein CI104_RS09060 PF00664 ABC transporter transmembrane region CI104_RS09060 PF00005 ABC transporter CI104_RS09065 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CI104_RS09070 PF06224 Winged helix DNA-binding domain CI104_RS09075 PF03966 Trm112p-like protein CI104_RS09080 PF02348 Cytidylyltransferase CI104_RS09085 PF01636 Phosphotransferase enzyme family CI104_RS09090 PF02698 DUF218 domain CI104_RS09105 PF03882 MukF winged-helix domain CI104_RS09105 PF17193 MukF C-terminal domain CI104_RS09105 PF17192 MukF middle domain CI104_RS09110 PF04288 MukE-like family CI104_RS09115 PF16330 MukB hinge domain CI104_RS09115 PF04310 MukB N-terminal CI104_RS09120 PF01471 Putative peptidoglycan binding domain CI104_RS09120 PF03734 L,D-transpeptidase catalytic domain CI104_RS09125 PF05951 Bacterial protein of unknown function (DUF882) CI104_RS09130 PF00753 Metallo-beta-lactamase superfamily CI104_RS09135 PF00155 Aminotransferase class I and II CI104_RS09150 PF01336 OB-fold nucleic acid binding domain CI104_RS09150 PF00152 tRNA synthetases class II (D, K and N) CI104_RS09155 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CI104_RS09155 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CI104_RS09160 PF11940 Domain of unknown function (DUF3458) Ig-like fold CI104_RS09160 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CI104_RS09160 PF01433 Peptidase family M1 domain CI104_RS09165 PF00005 ABC transporter CI104_RS09170 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS09175 PF00296 Luciferase-like monooxygenase CI104_RS09180 PF09084 NMT1/THI5 like CI104_RS09185 PF03358 NADPH-dependent FMN reductase CI104_RS09190 PF01180 Dihydroorotate dehydrogenase CI104_RS09195 PF07126 Cell-division protein ZapC CI104_RS09200 PF03473 MOSC domain CI104_RS09200 PF03476 MOSC N-terminal beta barrel domain CI104_RS09200 PF00111 2Fe-2S iron-sulfur cluster binding domain CI104_RS09205 PF02926 THUMP domain CI104_RS09205 PF10672 S-adenosylmethionine-dependent methyltransferase CI104_RS09205 PF01170 Putative RNA methylase family UPF0020 CI104_RS09210 PF00005 ABC transporter CI104_RS09210 PF16326 ABC transporter C-terminal domain CI104_RS09210 PF12848 ABC transporter CI104_RS09215 PF04403 Paraquat-inducible protein A CI104_RS09220 PF02470 MlaD protein CI104_RS09225 PF03886 ABC-type transport auxiliary lipoprotein component CI104_RS09230 PF04957 Ribosome modulation factor CI104_RS09235 PF07977 FabA-like domain CI104_RS09240 PF05362 Lon protease (S16) C-terminal proteolytic domain CI104_RS09240 PF13654 AAA domain CI104_RS09245 PF17414 MatP C-terminal ribbon-helix-helix domain CI104_RS09245 PF06303 MatP N-terminal domain CI104_RS09250 PF00691 OmpA family CI104_RS09250 PF01389 OmpA-like transmembrane domain CI104_RS09255 PF03846 Cell division inhibitor SulA CI104_RS09260 PF04993 TfoX N-terminal domain CI104_RS09260 PF04994 TfoX C-terminal domain CI104_RS09265 PF12805 FUSC-like inner membrane protein yccS CI104_RS09270 PF03733 Inner membrane component domain CI104_RS09275 PF12462 DNA helicase IV / RNA helicase N terminal CI104_RS09275 PF00580 UvrD/REP helicase N-terminal domain CI104_RS09275 PF13361 UvrD-like helicase C-terminal domain CI104_RS09280 PF02142 MGS-like domain CI104_RS09285 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CI104_RS09290 PF13380 CoA binding domain CI104_RS09295 PF08755 Hemimethylated DNA-binding protein YccV like CI104_RS09300 PF10672 S-adenosylmethionine-dependent methyltransferase CI104_RS09300 PF17785 PUA-like domain CI104_RS09305 PF00708 Acylphosphatase CI104_RS09310 PF04358 DsrC like protein CI104_RS09315 PF01027 Inhibitor of apoptosis-promoting Bax1 CI104_RS09335 PF12684 PDDEXK-like domain of unknown function (DUF3799) CI104_RS09335 PF06630 Enterobacterial exodeoxyribonuclease VIII CI104_RS09340 PF02082 Transcriptional regulator CI104_RS09360 PF00717 Peptidase S24-like CI104_RS09360 PF01381 Helix-turn-helix CI104_RS09410 PF13614 AAA domain CI104_RS09415 PF01555 DNA methylase CI104_RS09420 PF06183 DinI-like family CI104_RS09440 PF06147 Protein of unknown function (DUF968) CI104_RS09460 PF00182 Chitinase class I CI104_RS09510 PF01343 Peptidase family S49 CI104_RS09550 PF04984 Phage tail sheath protein subtilisin-like domain CI104_RS09550 PF17482 Phage tail sheath C-terminal domain CI104_RS09610 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS09615 PF07484 Phage Tail Collar Domain CI104_RS09620 PF00239 Resolvase, N terminal domain CI104_RS09620 PF02796 Helix-turn-helix domain of resolvase CI104_RS09645 PF03797 Autotransporter beta-domain CI104_RS09655 PF01638 HxlR-like helix-turn-helix CI104_RS09660 PF03212 Pertactin CI104_RS09660 PF03797 Autotransporter beta-domain CI104_RS09660 PF16168 Adhesin of bacterial autotransporter system, probable stalk CI104_RS09670 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CI104_RS09685 PF13488 Glycine zipper CI104_RS09685 PF00691 OmpA family CI104_RS09695 PF17871 AAA lid domain CI104_RS09695 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS09695 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS09695 PF07724 AAA domain (Cdc48 subfamily) CI104_RS09700 PF13296 Putative type VI secretion system Rhs element Vgr CI104_RS09700 PF04717 Type VI secretion system, phage-baseplate injector CI104_RS09700 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CI104_RS09795 PF13280 WYL domain CI104_RS09795 PF08279 HTH domain CI104_RS09800 PF02447 GntP family permease CI104_RS09805 PF00920 Dehydratase family CI104_RS09810 PF00701 Dihydrodipicolinate synthetase family CI104_RS09815 PF01614 Bacterial transcriptional regulator CI104_RS09820 PF02567 Phenazine biosynthesis-like protein CI104_RS09835 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS09840 PF00290 Tryptophan synthase alpha chain CI104_RS09845 PF09857 Putative toxin of bacterial toxin-antitoxin pair CI104_RS09850 PF00583 Acetyltransferase (GNAT) family CI104_RS09855 PF13847 Methyltransferase domain CI104_RS09865 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS09870 PF02378 Phosphotransferase system, EIIC CI104_RS09870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS09875 PF00874 PRD domain CI104_RS09875 PF05043 Mga helix-turn-helix domain CI104_RS09875 PF08279 HTH domain CI104_RS09875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS09880 PF05043 Mga helix-turn-helix domain CI104_RS09880 PF08279 HTH domain CI104_RS09880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS09880 PF00874 PRD domain CI104_RS09880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS09885 PF02311 AraC-like ligand binding domain CI104_RS09885 PF12833 Helix-turn-helix domain CI104_RS09890 PF02264 LamB porin CI104_RS09890 PF11471 Maltoporin periplasmic N-terminal extension CI104_RS09900 PF00701 Dihydrodipicolinate synthetase family CI104_RS09905 PF00465 Iron-containing alcohol dehydrogenase CI104_RS09920 PF00248 Aldo/keto reductase family CI104_RS09925 PF13378 Enolase C-terminal domain-like CI104_RS09925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS09930 PF00107 Zinc-binding dehydrogenase CI104_RS09930 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS09935 PF05025 RbsD / FucU transport protein family CI104_RS09940 PF00294 pfkB family carbohydrate kinase CI104_RS09945 PF01791 DeoC/LacD family aldolase CI104_RS09955 PF00501 AMP-binding enzyme CI104_RS09965 PF00550 Phosphopantetheine attachment site CI104_RS09970 PF00155 Aminotransferase class I and II CI104_RS09980 PF03739 Lipopolysaccharide export system permease LptF/LptG CI104_RS09985 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CI104_RS09995 PF01943 Polysaccharide biosynthesis protein CI104_RS10020 PF01614 Bacterial transcriptional regulator CI104_RS10025 PF01081 KDPG and KHG aldolase CI104_RS10030 PF07690 Major Facilitator Superfamily CI104_RS10045 PF00465 Iron-containing alcohol dehydrogenase CI104_RS10050 PF01594 AI-2E family transporter CI104_RS10055 PF12801 4Fe-4S binding domain CI104_RS10065 PF00226 DnaJ domain CI104_RS10065 PF01556 DnaJ C terminal domain CI104_RS10075 PF02683 Cytochrome C biogenesis protein transmembrane region CI104_RS10075 PF13098 Thioredoxin-like domain CI104_RS10075 PF11412 Disulphide bond corrector protein DsbC CI104_RS10080 PF13462 Thioredoxin CI104_RS10080 PF06965 Na+/H+ antiporter 1 CI104_RS10085 PF00578 AhpC/TSA family CI104_RS10090 PF04205 FMN-binding domain CI104_RS10095 PF03239 Iron permease FTR1 family CI104_RS10100 PF10634 Fe2+ transport protein CI104_RS10110 PF12704 MacB-like periplasmic core domain CI104_RS10110 PF00005 ABC transporter CI104_RS10110 PF02687 FtsX-like permease family CI104_RS10120 PF12704 MacB-like periplasmic core domain CI104_RS10120 PF00005 ABC transporter CI104_RS10120 PF02687 FtsX-like permease family CI104_RS10145 PF00328 Histidine phosphatase superfamily (branch 2) CI104_RS10150 PF13993 YccJ-like protein CI104_RS10155 PF03358 NADPH-dependent FMN reductase CI104_RS10160 PF10685 Stress-induced bacterial acidophilic repeat motif CI104_RS10165 PF00440 Bacterial regulatory proteins, tetR family CI104_RS10165 PF08362 YcdC-like protein, C-terminal region CI104_RS10175 PF14850 DNA-binding domain of Proline dehydrogenase CI104_RS10175 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CI104_RS10175 PF01619 Proline dehydrogenase CI104_RS10175 PF00171 Aldehyde dehydrogenase family CI104_RS10185 PF00474 Sodium:solute symporter family CI104_RS10190 PF03239 Iron permease FTR1 family CI104_RS10195 PF13473 Cupredoxin-like domain CI104_RS10195 PF09375 Imelysin CI104_RS10200 PF04261 Dyp-type peroxidase family CI104_RS10205 PF02562 PhoH-like protein CI104_RS10215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CI104_RS10220 PF02811 PHP domain CI104_RS10225 PF02613 Nitrate reductase delta subunit CI104_RS10230 PF06496 Protein of unknown function (DUF1097) CI104_RS10235 PF03783 Curli production assembly/transport component CsgG CI104_RS10240 PF10614 Type VIII secretion system (T8SS), CsgF protein CI104_RS10245 PF10627 Curli assembly protein CsgE CI104_RS10250 PF00196 Bacterial regulatory proteins, luxR family CI104_RS10255 PF07012 Curlin associated repeat CI104_RS10260 PF07012 Curlin associated repeat CI104_RS10265 PF10610 Thin aggregative fimbriae synthesis protein CI104_RS10275 PF01661 Macro domain CI104_RS10280 PF13091 PLD-like domain CI104_RS10285 PF01757 Acyltransferase family CI104_RS10295 PF04349 Periplasmic glucan biosynthesis protein, MdoG CI104_RS10300 PF00535 Glycosyl transferase family 2 CI104_RS10305 PF07119 Protein of unknown function (DUF1375) CI104_RS10310 PF13984 MsyB protein CI104_RS10315 PF07690 Major Facilitator Superfamily CI104_RS10325 PF03279 Bacterial lipid A biosynthesis acyltransferase CI104_RS10330 PF00581 Rhodanese-like domain CI104_RS10330 PF17773 UPF0176 acylphosphatase like domain CI104_RS10330 PF12368 Rhodanase C-terminal CI104_RS10335 PF04264 YceI-like domain CI104_RS10340 PF01292 Prokaryotic cytochrome b561 CI104_RS10345 PF10968 Protein of unknown function (DUF2770) CI104_RS10350 PF01266 FAD dependent oxidoreductase CI104_RS10355 PF13991 BssS protein family CI104_RS10360 PF06183 DinI-like family CI104_RS10365 PF01979 Amidohydrolase family CI104_RS10370 PF07273 Protein of unknown function (DUF1439) CI104_RS10375 PF13417 Glutathione S-transferase, N-terminal domain CI104_RS10375 PF04399 Glutaredoxin 2, C terminal domain CI104_RS10380 PF07690 Major Facilitator Superfamily CI104_RS10385 PF13302 Acetyltransferase (GNAT) domain CI104_RS10390 PF04337 Protein of unknown function, DUF480 CI104_RS10395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS10400 PF03023 Lipid II flippase MurJ CI104_RS10405 PF05130 FlgN protein CI104_RS10410 PF04316 Anti-sigma-28 factor, FlgM CI104_RS10415 PF13144 Chaperone for flagella basal body P-ring formation CI104_RS10425 PF00460 Flagella basal body rod protein CI104_RS10430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CI104_RS10430 PF00460 Flagella basal body rod protein CI104_RS10435 PF13861 FlgD Tudor-like domain CI104_RS10435 PF13860 FlgD Ig-like domain CI104_RS10435 PF03963 Flagellar hook capping protein - N-terminal region CI104_RS10440 PF00460 Flagella basal body rod protein CI104_RS10440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CI104_RS10440 PF07559 Flagellar basal body protein FlaE CI104_RS10445 PF00460 Flagella basal body rod protein CI104_RS10445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CI104_RS10450 PF00460 Flagella basal body rod protein CI104_RS10450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CI104_RS10455 PF02107 Flagellar L-ring protein CI104_RS10460 PF02119 Flagellar P-ring protein CI104_RS10465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CI104_RS10465 PF10135 Rod binding protein CI104_RS10470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CI104_RS10470 PF00460 Flagella basal body rod protein CI104_RS10475 PF00669 Bacterial flagellin N-terminal helical region CI104_RS10480 PF07690 Major Facilitator Superfamily CI104_RS10485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS10485 PF03466 LysR substrate binding domain CI104_RS10490 PF12111 Polyribonucleotide phosphorylase C terminal CI104_RS10490 PF00575 S1 RNA binding domain CI104_RS10490 PF10150 Ribonuclease E/G family CI104_RS10500 PF01479 S4 domain CI104_RS10500 PF00849 RNA pseudouridylate synthase CI104_RS10505 PF02545 Maf-like protein CI104_RS10510 PF02620 Large ribosomal RNA subunit accumulation protein YceD CI104_RS10515 PF01783 Ribosomal L32p protein family CI104_RS10520 PF02504 Fatty acid synthesis protein CI104_RS10525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CI104_RS10525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CI104_RS10530 PF00698 Acyl transferase domain CI104_RS10540 PF00550 Phosphopantetheine attachment site CI104_RS10545 PF00109 Beta-ketoacyl synthase, N-terminal domain CI104_RS10545 PF02801 Beta-ketoacyl synthase, C-terminal domain CI104_RS10550 PF01063 Amino-transferase class IV CI104_RS10555 PF02618 YceG-like family CI104_RS10560 PF02223 Thymidylate kinase CI104_RS10565 PF09115 DNA polymerase III, delta subunit, C terminal CI104_RS10570 PF01026 TatD related DNase CI104_RS10575 PF02378 Phosphotransferase system, EIIC CI104_RS10575 PF00367 phosphotransferase system, EIIB CI104_RS10580 PF07715 TonB-dependent Receptor Plug Domain CI104_RS10580 PF00593 TonB dependent receptor CI104_RS10585 PF01230 HIT domain CI104_RS10590 PF07233 Protein of unknown function (DUF1425) CI104_RS10595 PF13036 Peptidoglycan-synthase activator LpoB CI104_RS10600 PF01636 Phosphotransferase enzyme family CI104_RS10605 PF00933 Glycosyl hydrolase family 3 N terminal domain CI104_RS10610 PF05728 Uncharacterised protein family (UPF0227) CI104_RS10615 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS10620 PF05433 Glycine zipper 2TM domain CI104_RS10625 PF00593 TonB dependent receptor CI104_RS10625 PF07715 TonB-dependent Receptor Plug Domain CI104_RS10630 PF08765 Mor transcription activator family CI104_RS10675 PF13401 AAA domain CI104_RS10675 PF01471 Putative peptidoglycan binding domain CI104_RS10745 PF03237 Terminase-like family CI104_RS10755 PF04233 Phage Mu protein F like protein CI104_RS10870 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS10875 PF07484 Phage Tail Collar Domain CI104_RS10880 PF02796 Helix-turn-helix domain of resolvase CI104_RS10880 PF00239 Resolvase, N terminal domain CI104_RS10885 PF00593 TonB dependent receptor CI104_RS10885 PF07715 TonB-dependent Receptor Plug Domain CI104_RS10890 PF00440 Bacterial regulatory proteins, tetR family CI104_RS10895 PF07338 Protein of unknown function (DUF1471) CI104_RS10900 PF03734 L,D-transpeptidase catalytic domain CI104_RS10900 PF01476 LysM domain CI104_RS10900 PF17969 L,D-transpeptidase C-terminal domain CI104_RS10905 PF00270 DEAD/DEAH box helicase CI104_RS10905 PF02559 CarD-like/TRCF domain CI104_RS10905 PF17757 UvrB interaction domain CI104_RS10905 PF03461 TRCF domain CI104_RS10905 PF00271 Helicase conserved C-terminal domain CI104_RS10910 PF01757 Acyltransferase family CI104_RS10915 PF12704 MacB-like periplasmic core domain CI104_RS10915 PF02687 FtsX-like permease family CI104_RS10920 PF00005 ABC transporter CI104_RS10925 PF02687 FtsX-like permease family CI104_RS10925 PF12704 MacB-like periplasmic core domain CI104_RS10930 PF00480 ROK family CI104_RS10935 PF02146 Sir2 family CI104_RS10940 PF13416 Bacterial extracellular solute-binding protein CI104_RS10945 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS10950 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS10955 PF00005 ABC transporter CI104_RS10955 PF08402 TOBE domain CI104_RS10965 PF07687 Peptidase dimerisation domain CI104_RS10965 PF01546 Peptidase family M20/M25/M40 CI104_RS10970 PF08007 Cupin superfamily protein CI104_RS10975 PF08918 PhoQ Sensor CI104_RS10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS10980 PF00486 Transcriptional regulatory protein, C terminal CI104_RS10980 PF00072 Response regulator receiver domain CI104_RS10985 PF08328 Adenylosuccinate lyase C-terminal CI104_RS10985 PF00206 Lyase CI104_RS10990 PF04356 Protein of unknown function (DUF489) CI104_RS11000 PF00293 NUDIX domain CI104_RS11005 PF00849 RNA pseudouridylate synthase CI104_RS11010 PF00180 Isocitrate/isopropylmalate dehydrogenase CI104_RS11015 PF00589 Phage integrase family CI104_RS11015 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CI104_RS11045 PF01381 Helix-turn-helix CI104_RS11045 PF00717 Peptidase S24-like CI104_RS11065 PF03354 Phage Terminase CI104_RS11070 PF05869 DNA N-6-adenine-methyltransferase (Dam) CI104_RS11080 PF01726 LexA DNA binding domain CI104_RS11080 PF00717 Peptidase S24-like CI104_RS11085 PF05866 Endodeoxyribonuclease RusA CI104_RS11100 PF06147 Protein of unknown function (DUF968) CI104_RS11115 PF01555 DNA methylase CI104_RS11125 PF00959 Phage lysozyme CI104_RS11130 PF10721 Protein of unknown function (DUF2514) CI104_RS11135 PF03797 Autotransporter beta-domain CI104_RS11140 PF00196 Bacterial regulatory proteins, luxR family CI104_RS11140 PF00563 EAL domain CI104_RS11145 PF07471 Phage DNA packaging protein Nu1 CI104_RS11150 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS11155 PF02831 gpW CI104_RS11165 PF01957 NfeD-like C-terminal, partner-binding CI104_RS11165 PF01972 Serine dehydrogenase proteinase CI104_RS11180 PF14659 Phage integrase, N-terminal SAM-like domain CI104_RS11180 PF13356 Arm DNA-binding domain CI104_RS11180 PF00589 Phage integrase family CI104_RS11230 PF03864 Phage major capsid protein E CI104_RS11245 PF07471 Phage DNA packaging protein Nu1 CI104_RS11265 PF03864 Phage major capsid protein E CI104_RS11305 PF06791 Prophage tail length tape measure protein CI104_RS11360 PF06183 DinI-like family CI104_RS11365 PF00717 Peptidase S24-like CI104_RS11375 PF00180 Isocitrate/isopropylmalate dehydrogenase CI104_RS11395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS11395 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS11400 PF13954 PapC N-terminal domain CI104_RS11400 PF13953 PapC C-terminal domain CI104_RS11400 PF00577 Outer membrane usher protein CI104_RS11415 PF08671 Anti-repressor SinI CI104_RS11415 PF01381 Helix-turn-helix CI104_RS11430 PF13411 MerR HTH family regulatory protein CI104_RS11435 PF04940 Sensors of blue-light using FAD CI104_RS11435 PF00563 EAL domain CI104_RS11440 PF10798 Biofilm development protein YmgB/AriR CI104_RS11450 PF10798 Biofilm development protein YmgB/AriR CI104_RS11470 PF08241 Methyltransferase domain CI104_RS11480 PF10685 Stress-induced bacterial acidophilic repeat motif CI104_RS11485 PF05974 Domain of unknown function (DUF892) CI104_RS11490 PF02464 Competence-damaged protein CI104_RS11495 PF04239 Protein of unknown function (DUF421) CI104_RS11505 PF04076 Bacterial OB fold (BOF) protein CI104_RS11510 PF00313 'Cold-shock' DNA-binding domain CI104_RS11525 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CI104_RS11530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS11530 PF01568 Molydopterin dinucleotide binding domain CI104_RS11530 PF00384 Molybdopterin oxidoreductase CI104_RS11535 PF04226 Transglycosylase associated protein CI104_RS11555 PF04343 Protein of unknown function, DUF488 CI104_RS11560 PF04463 Protein of unknown function (DUF523) CI104_RS11565 PF00117 Glutamine amidotransferase class-I CI104_RS11565 PF06418 CTP synthase N-terminus CI104_RS11570 PF07690 Major Facilitator Superfamily CI104_RS11575 PF02311 AraC-like ligand binding domain CI104_RS11575 PF12833 Helix-turn-helix domain CI104_RS11580 PF04284 Protein of unknown function (DUF441) CI104_RS11590 PF04073 Aminoacyl-tRNA editing domain CI104_RS11595 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS11595 PF17155 Gammaproteobacterial periplasmic sensor domain CI104_RS11600 PF04285 Protein of unknown function (DUF444) CI104_RS11605 PF08298 PrkA AAA domain CI104_RS11605 PF06798 PrkA serine protein kinase C-terminal domain CI104_RS11610 PF06629 MltA-interacting protein MipA CI104_RS11615 PF00248 Aldo/keto reductase family CI104_RS11620 PF01263 Aldose 1-epimerase CI104_RS11625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CI104_RS11625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CI104_RS11630 PF01641 SelR domain CI104_RS11635 PF07023 Protein of unknown function (DUF1315) CI104_RS11640 PF01844 HNH endonuclease CI104_RS11645 PF00704 Glycosyl hydrolases family 18 CI104_RS11645 PF00041 Fibronectin type III domain CI104_RS11650 PF00107 Zinc-binding dehydrogenase CI104_RS11650 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS11655 PF00083 Sugar (and other) transporter CI104_RS11660 PF00107 Zinc-binding dehydrogenase CI104_RS11660 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS11665 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS11670 PF00294 pfkB family carbohydrate kinase CI104_RS11675 PF00248 Aldo/keto reductase family CI104_RS11680 PF08220 DeoR-like helix-turn-helix domain CI104_RS11680 PF00455 DeoR C terminal sensor domain CI104_RS11685 PF00083 Sugar (and other) transporter CI104_RS11690 PF00857 Isochorismatase family CI104_RS11695 PF17763 Glutaminase/Asparaginase C-terminal domain CI104_RS11695 PF00710 Asparaginase, N-terminal CI104_RS11700 PF01343 Peptidase family S49 CI104_RS11705 PF00881 Nitroreductase family CI104_RS11715 PF00586 AIR synthase related protein, N-terminal domain CI104_RS11715 PF02769 AIR synthase related protein, C-terminal domain CI104_RS11720 PF01751 Toprim domain CI104_RS11720 PF01131 DNA topoisomerase CI104_RS11725 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CI104_RS11725 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CI104_RS11730 PF07383 Protein of unknown function (DUF1496) CI104_RS11735 PF00293 NUDIX domain CI104_RS11740 PF02627 Carboxymuconolactone decarboxylase family CI104_RS11745 PF01066 CDP-alcohol phosphatidyltransferase CI104_RS11750 PF00581 Rhodanese-like domain CI104_RS11755 PF00005 ABC transporter CI104_RS11760 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS11765 PF13416 Bacterial extracellular solute-binding protein CI104_RS11775 PF03372 Endonuclease/Exonuclease/phosphatase family CI104_RS11780 PF00202 Aminotransferase class-III CI104_RS11785 PF04958 Arginine N-succinyltransferase beta subunit CI104_RS11790 PF00171 Aldehyde dehydrogenase family CI104_RS11795 PF04996 Succinylarginine dihydrolase CI104_RS11800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CI104_RS11805 PF07813 LTXXQ motif family protein CI104_RS11810 PF05962 HutD CI104_RS11820 PF02540 NAD synthase CI104_RS11825 PF04355 SmpA / OmlA family CI104_RS11835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS11840 PF02378 Phosphotransferase system, EIIC CI104_RS11845 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CI104_RS11850 PF12833 Helix-turn-helix domain CI104_RS11850 PF07883 Cupin domain CI104_RS11855 PF11975 Family 4 glycosyl hydrolase C-terminal domain CI104_RS11855 PF02056 Family 4 glycosyl hydrolase CI104_RS11860 PF04794 YdjC-like protein CI104_RS11865 PF18011 C-terminal domain found in long catalases CI104_RS11865 PF06628 Catalase-related immune-responsive CI104_RS11865 PF00199 Catalase CI104_RS11870 PF10729 Cell division activator CedA CI104_RS11875 PF00375 Sodium:dicarboxylate symporter family CI104_RS11880 PF04307 LexA-binding, inner membrane-associated putative hydrolase CI104_RS11890 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS11895 PF14002 YniB-like protein CI104_RS11900 PF03881 Fructosamine kinase CI104_RS11905 PF11080 Endoribonuclease GhoS CI104_RS11910 PF00294 pfkB family carbohydrate kinase CI104_RS11915 PF04338 Protein of unknown function, DUF481 CI104_RS11935 PF03129 Anticodon binding domain CI104_RS11935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CI104_RS11935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CI104_RS11935 PF02824 TGS domain CI104_RS11940 PF00707 Translation initiation factor IF-3, C-terminal domain CI104_RS11940 PF05198 Translation initiation factor IF-3, N-terminal domain CI104_RS11945 PF01632 Ribosomal protein L35 CI104_RS11950 PF00453 Ribosomal protein L20 CI104_RS11955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CI104_RS11955 PF01409 tRNA synthetases class II core domain (F) CI104_RS11960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CI104_RS11960 PF01588 Putative tRNA binding domain CI104_RS11960 PF03147 Ferredoxin-fold anticodon binding domain CI104_RS11960 PF03484 tRNA synthetase B5 domain CI104_RS11960 PF03483 B3/4 domain CI104_RS11965 PF00216 Bacterial DNA-binding protein CI104_RS11970 PF01032 FecCD transport family CI104_RS11975 PF00255 Glutathione peroxidase CI104_RS11980 PF00005 ABC transporter CI104_RS11985 PF00877 NlpC/P60 family CI104_RS11990 PF00563 EAL domain CI104_RS11995 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CI104_RS12000 PF10636 Hemin uptake protein hemP CI104_RS12005 PF00793 DAHP synthetase I family CI104_RS12010 PF03618 Kinase/pyrophosphorylase CI104_RS12015 PF00391 PEP-utilising enzyme, mobile domain CI104_RS12015 PF02896 PEP-utilising enzyme, TIM barrel domain CI104_RS12015 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CI104_RS12020 PF13193 AMP-binding enzyme C-terminal domain CI104_RS12020 PF00501 AMP-binding enzyme CI104_RS12030 PF01494 FAD binding domain CI104_RS12035 PF00766 Electron transfer flavoprotein FAD-binding domain CI104_RS12035 PF01012 Electron transfer flavoprotein domain CI104_RS12040 PF01012 Electron transfer flavoprotein domain CI104_RS12045 PF02311 AraC-like ligand binding domain CI104_RS12045 PF12833 Helix-turn-helix domain CI104_RS12050 PF02770 Acyl-CoA dehydrogenase, middle domain CI104_RS12050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CI104_RS12050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CI104_RS12055 PF01144 Coenzyme A transferase CI104_RS12060 PF01487 Type I 3-dehydroquinase CI104_RS12065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CI104_RS12065 PF08501 Shikimate dehydrogenase substrate binding domain CI104_RS12070 PF07690 Major Facilitator Superfamily CI104_RS12075 PF07690 Major Facilitator Superfamily CI104_RS12080 PF08965 Domain of unknown function (DUF1870) CI104_RS12100 PF01594 AI-2E family transporter CI104_RS12105 PF13183 4Fe-4S dicluster domain CI104_RS12105 PF01565 FAD binding domain CI104_RS12105 PF02913 FAD linked oxidases, C-terminal domain CI104_RS12110 PF03061 Thioesterase superfamily CI104_RS12115 PF15930 Domain of unknown function CI104_RS12125 PF03466 LysR substrate binding domain CI104_RS12125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS12130 PF01521 Iron-sulphur cluster biosynthesis CI104_RS12135 PF01458 Uncharacterized protein family (UPF0051) CI104_RS12140 PF00005 ABC transporter CI104_RS12145 PF01458 Uncharacterized protein family (UPF0051) CI104_RS12150 PF00266 Aminotransferase class-V CI104_RS12155 PF02657 Fe-S metabolism associated domain CI104_RS12160 PF17969 L,D-transpeptidase C-terminal domain CI104_RS12160 PF03734 L,D-transpeptidase catalytic domain CI104_RS12160 PF01476 LysM domain CI104_RS12165 PF04728 Lipoprotein leucine-zipper CI104_RS12170 PF00224 Pyruvate kinase, barrel domain CI104_RS12170 PF02887 Pyruvate kinase, alpha/beta domain CI104_RS12180 PF09383 NIL domain CI104_RS12180 PF00005 ABC transporter CI104_RS12185 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS12190 PF03180 NLPA lipoprotein CI104_RS12205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS12205 PF00384 Molybdopterin oxidoreductase CI104_RS12205 PF01568 Molydopterin dinucleotide binding domain CI104_RS12210 PF03916 Polysulphide reductase, NrfD CI104_RS12215 PF13247 4Fe-4S dicluster domain CI104_RS12220 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS12225 PF00196 Bacterial regulatory proteins, luxR family CI104_RS12225 PF00072 Response regulator receiver domain CI104_RS12230 PF10965 Protein of unknown function (DUF2767) CI104_RS12235 PF12800 4Fe-4S binding domain CI104_RS12235 PF13247 4Fe-4S dicluster domain CI104_RS12240 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CI104_RS12240 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CI104_RS12250 PF13247 4Fe-4S dicluster domain CI104_RS12255 PF01292 Prokaryotic cytochrome b561 CI104_RS12265 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS12270 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS12275 PF00005 ABC transporter CI104_RS12280 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS12295 PF13454 FAD-NAD(P)-binding CI104_RS12305 PF08803 Putative mono-oxygenase ydhR CI104_RS12330 PF01554 MatE CI104_RS12335 PF00677 Lumazine binding domain CI104_RS12345 PF07690 Major Facilitator Superfamily CI104_RS12350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS12350 PF03466 LysR substrate binding domain CI104_RS12355 PF00356 Bacterial regulatory proteins, lacI family CI104_RS12370 PF07690 Major Facilitator Superfamily CI104_RS12375 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CI104_RS12375 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CI104_RS12380 PF00877 NlpC/P60 family CI104_RS12385 PF00462 Glutaredoxin CI104_RS12390 PF08494 DEAD/H associated CI104_RS12390 PF00271 Helicase conserved C-terminal domain CI104_RS12390 PF00270 DEAD/DEAH box helicase CI104_RS12395 PF00929 Exonuclease CI104_RS12400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CI104_RS12405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CI104_RS12410 PF00440 Bacterial regulatory proteins, tetR family CI104_RS12410 PF16925 Tetracyclin repressor-like, C-terminal domain CI104_RS12415 PF06945 Protein of unknown function (DUF1289) CI104_RS12420 PF00248 Aldo/keto reductase family CI104_RS12425 PF00080 Copper/zinc superoxide dismutase (SODC) CI104_RS12430 PF04632 Fusaric acid resistance protein family CI104_RS12435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS12435 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS12440 PF07869 Protein of unknown function (DUF1656) CI104_RS12445 PF01047 MarR family CI104_RS12450 PF05433 Glycine zipper 2TM domain CI104_RS12455 PF03702 Anhydro-N-acetylmuramic acid kinase CI104_RS12460 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CI104_RS12465 PF01243 Pyridoxamine 5'-phosphate oxidase CI104_RS12465 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CI104_RS12470 PF00579 tRNA synthetases class I (W and Y) CI104_RS12470 PF01479 S4 domain CI104_RS12475 PF08543 Phosphomethylpyrimidine kinase CI104_RS12480 PF00043 Glutathione S-transferase, C-terminal domain CI104_RS12480 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS12485 PF00854 POT family CI104_RS12490 PF10576 Iron-sulfur binding domain of endonuclease III CI104_RS12490 PF00730 HhH-GPD superfamily base excision DNA repair protein CI104_RS12490 PF00633 Helix-hairpin-helix motif CI104_RS12495 PF02508 Rnf-Nqr subunit, membrane protein CI104_RS12500 PF04205 FMN-binding domain CI104_RS12505 PF03116 NQR2, RnfD, RnfE family CI104_RS12510 PF12838 4Fe-4S dicluster domain CI104_RS12510 PF13375 RnfC Barrel sandwich hybrid domain CI104_RS12510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CI104_RS12510 PF10531 SLBB domain CI104_RS12515 PF04060 Putative Fe-S cluster CI104_RS12520 PF02508 Rnf-Nqr subunit, membrane protein CI104_RS12525 PF10754 Protein of unknown function (DUF2569) CI104_RS12530 PF05321 Haemolysin expression modulating protein CI104_RS12540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS12540 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS12545 PF00962 Adenosine/AMP deaminase CI104_RS12550 PF00155 Aminotransferase class I and II CI104_RS12555 PF00367 phosphotransferase system, EIIB CI104_RS12555 PF02378 Phosphotransferase system, EIIC CI104_RS12560 PF00356 Bacterial regulatory proteins, lacI family CI104_RS12560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS12565 PF06097 Bacterial protein of unknown function (DUF945) CI104_RS12570 PF01238 Phosphomannose isomerase type I CI104_RS12575 PF05683 Fumarase C-terminus CI104_RS12575 PF05681 Fumarate hydratase (Fumerase) CI104_RS12580 PF00206 Lyase CI104_RS12580 PF10415 Fumarase C C-terminus CI104_RS12585 PF05472 DNA replication terminus site-binding protein (Ter protein) CI104_RS12590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS12590 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS12590 PF00672 HAMP domain CI104_RS12595 PF00072 Response regulator receiver domain CI104_RS12595 PF00486 Transcriptional regulatory protein, C terminal CI104_RS12600 PF06942 GlpM protein CI104_RS12610 PF13520 Amino acid permease CI104_RS12615 PF07338 Protein of unknown function (DUF1471) CI104_RS12620 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CI104_RS12620 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CI104_RS12620 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CI104_RS12625 PF02233 NAD(P) transhydrogenase beta subunit CI104_RS12630 PF01594 AI-2E family transporter CI104_RS12640 PF00893 Small Multidrug Resistance protein CI104_RS12645 PF00893 Small Multidrug Resistance protein CI104_RS12650 PF00089 Trypsin CI104_RS12660 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CI104_RS12665 PF07690 Major Facilitator Superfamily CI104_RS12670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS12670 PF03466 LysR substrate binding domain CI104_RS12675 PF00480 ROK family CI104_RS12685 PF00005 ABC transporter CI104_RS12685 PF00571 CBS domain CI104_RS12690 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS12695 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CI104_RS12700 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS12705 PF02613 Nitrate reductase delta subunit CI104_RS12710 PF04976 DMSO reductase anchor subunit (DmsC) CI104_RS12715 PF13247 4Fe-4S dicluster domain CI104_RS12715 PF12800 4Fe-4S binding domain CI104_RS12720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS12720 PF00384 Molybdopterin oxidoreductase CI104_RS12720 PF01568 Molydopterin dinucleotide binding domain CI104_RS12725 PF06649 Protein of unknown function (DUF1161) CI104_RS12730 PF03797 Autotransporter beta-domain CI104_RS12735 PF06788 Uncharacterised protein family (UPF0257) CI104_RS12740 PF13302 Acetyltransferase (GNAT) domain CI104_RS12745 PF06932 Protein of unknown function (DUF1283) CI104_RS12750 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CI104_RS12755 PF00107 Zinc-binding dehydrogenase CI104_RS12755 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS12760 PF00083 Sugar (and other) transporter CI104_RS12760 PF07690 Major Facilitator Superfamily CI104_RS12765 PF13378 Enolase C-terminal domain-like CI104_RS12765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS12770 PF00083 Sugar (and other) transporter CI104_RS12775 PF08125 Mannitol dehydrogenase C-terminal domain CI104_RS12775 PF01232 Mannitol dehydrogenase Rossmann domain CI104_RS12780 PF14001 YdfZ protein CI104_RS12785 PF07729 FCD domain CI104_RS12785 PF00392 Bacterial regulatory proteins, gntR family CI104_RS12790 PF00106 short chain dehydrogenase CI104_RS12795 PF01432 Peptidase family M3 CI104_RS12800 PF00144 Beta-lactamase CI104_RS12810 PF01965 DJ-1/PfpI family CI104_RS12820 PF01717 Cobalamin-independent synthase, Catalytic domain CI104_RS12835 PF02954 Bacterial regulatory protein, Fis family CI104_RS12835 PF00158 Sigma-54 interaction domain CI104_RS12835 PF13188 PAS domain CI104_RS12840 PF02653 Branched-chain amino acid transport system / permease component CI104_RS12845 PF02653 Branched-chain amino acid transport system / permease component CI104_RS12850 PF00005 ABC transporter CI104_RS12855 PF00005 ABC transporter CI104_RS12860 PF07690 Major Facilitator Superfamily CI104_RS12865 PF00892 EamA-like transporter family CI104_RS12870 PF13999 MarB protein CI104_RS12875 PF12833 Helix-turn-helix domain CI104_RS12880 PF01047 MarR family CI104_RS12885 PF01914 MarC family integral membrane protein CI104_RS12890 PF07690 Major Facilitator Superfamily CI104_RS12895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS12895 PF03466 LysR substrate binding domain CI104_RS12900 PF00171 Aldehyde dehydrogenase family CI104_RS12905 PF02203 Tar ligand binding domain homologue CI104_RS12905 PF00672 HAMP domain CI104_RS12905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS12910 PF04960 Glutaminase CI104_RS12915 PF13811 Domain of unknown function (DUF4186) CI104_RS12920 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS12930 PF08125 Mannitol dehydrogenase C-terminal domain CI104_RS12930 PF01232 Mannitol dehydrogenase Rossmann domain CI104_RS12935 PF01062 Bestrophin, RFP-TM, chloride channel CI104_RS12940 PF03797 Autotransporter beta-domain CI104_RS12950 PF13649 Methyltransferase domain CI104_RS12970 PF13378 Enolase C-terminal domain-like CI104_RS12970 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS12975 PF00106 short chain dehydrogenase CI104_RS12980 PF07690 Major Facilitator Superfamily CI104_RS12985 PF00107 Zinc-binding dehydrogenase CI104_RS12985 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS12990 PF07729 FCD domain CI104_RS12990 PF00392 Bacterial regulatory proteins, gntR family CI104_RS13000 PF01381 Helix-turn-helix CI104_RS13005 PF07804 HipA-like C-terminal domain CI104_RS13005 PF13657 HipA N-terminal domain CI104_RS13010 PF13737 Transposase DDE domain CI104_RS13025 PF02638 Glycosyl hydrolase-like 10 CI104_RS13050 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS13055 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS13055 PF00563 EAL domain CI104_RS13055 PF13426 PAS domain CI104_RS13060 PF02203 Tar ligand binding domain homologue CI104_RS13060 PF00672 HAMP domain CI104_RS13060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS13065 PF06411 HdeA/HdeB family CI104_RS13075 PF01427 D-ala-D-ala dipeptidase CI104_RS13080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS13085 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS13090 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS13090 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS13095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS13095 PF00005 ABC transporter CI104_RS13100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS13100 PF00005 ABC transporter CI104_RS13105 PF02566 OsmC-like protein CI104_RS13110 PF08136 30S ribosomal protein subunit S22 family CI104_RS13115 PF00390 Malic enzyme, N-terminal domain CI104_RS13115 PF03949 Malic enzyme, NAD binding domain CI104_RS13120 PF00005 ABC transporter CI104_RS13120 PF12848 ABC transporter CI104_RS13125 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CI104_RS13130 PF01381 Helix-turn-helix CI104_RS13135 PF01292 Prokaryotic cytochrome b561 CI104_RS13140 PF12800 4Fe-4S binding domain CI104_RS13140 PF13247 4Fe-4S dicluster domain CI104_RS13140 PF09163 Formate dehydrogenase N, transmembrane CI104_RS13150 PF00892 EamA-like transporter family CI104_RS13155 PF13592 Winged helix-turn helix CI104_RS13155 PF13358 DDE superfamily endonuclease CI104_RS13160 PF00267 Gram-negative porin CI104_RS13170 PF07690 Major Facilitator Superfamily CI104_RS13175 PF00106 short chain dehydrogenase CI104_RS13180 PF00970 Oxidoreductase FAD-binding domain CI104_RS13180 PF00175 Oxidoreductase NAD-binding domain CI104_RS13180 PF00111 2Fe-2S iron-sulfur cluster binding domain CI104_RS13185 PF00866 Ring hydroxylating beta subunit CI104_RS13190 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CI104_RS13190 PF00355 Rieske [2Fe-2S] domain CI104_RS13195 PF04444 Catechol dioxygenase N terminus CI104_RS13195 PF00775 Dioxygenase CI104_RS13200 PF02426 Muconolactone delta-isomerase CI104_RS13205 PF13378 Enolase C-terminal domain-like CI104_RS13205 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS13210 PF09339 IclR helix-turn-helix domain CI104_RS13210 PF01614 Bacterial transcriptional regulator CI104_RS13220 PF07690 Major Facilitator Superfamily CI104_RS13225 PF14710 Respiratory nitrate reductase alpha N-terminal CI104_RS13225 PF00384 Molybdopterin oxidoreductase CI104_RS13225 PF01568 Molydopterin dinucleotide binding domain CI104_RS13230 PF13247 4Fe-4S dicluster domain CI104_RS13230 PF14711 Respiratory nitrate reductase beta C-terminal CI104_RS13235 PF02613 Nitrate reductase delta subunit CI104_RS13240 PF02665 Nitrate reductase gamma subunit CI104_RS13245 PF02567 Phenazine biosynthesis-like protein CI104_RS13250 PF03797 Autotransporter beta-domain CI104_RS13255 PF00797 N-acetyltransferase CI104_RS13260 PF01613 Flavin reductase like domain CI104_RS13265 PF00455 DeoR C terminal sensor domain CI104_RS13265 PF08220 DeoR-like helix-turn-helix domain CI104_RS13275 PF14864 Alkyl sulfatase C-terminal CI104_RS13275 PF14863 Alkyl sulfatase dimerisation CI104_RS13275 PF00753 Metallo-beta-lactamase superfamily CI104_RS13280 PF01361 Tautomerase enzyme CI104_RS13285 PF00356 Bacterial regulatory proteins, lacI family CI104_RS13290 PF13378 Enolase C-terminal domain-like CI104_RS13290 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS13295 PF07690 Major Facilitator Superfamily CI104_RS13300 PF13417 Glutathione S-transferase, N-terminal domain CI104_RS13305 PF08447 PAS fold CI104_RS13305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS13310 PF00324 Amino acid permease CI104_RS13320 PF07715 TonB-dependent Receptor Plug Domain CI104_RS13320 PF00593 TonB dependent receptor CI104_RS13325 PF00392 Bacterial regulatory proteins, gntR family CI104_RS13325 PF07729 FCD domain CI104_RS13330 PF00107 Zinc-binding dehydrogenase CI104_RS13330 PF16884 N-terminal domain of oxidoreductase CI104_RS13335 PF01381 Helix-turn-helix CI104_RS13335 PF08671 Anti-repressor SinI CI104_RS13340 PF00583 Acetyltransferase (GNAT) family CI104_RS13345 PF04657 Putative inner membrane exporter, YdcZ CI104_RS13350 PF10735 Protein of unknown function (DUF2526) CI104_RS13355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS13375 PF10753 Toxin GhoT_OrtT CI104_RS13390 PF00171 Aldehyde dehydrogenase family CI104_RS13395 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS13400 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS13405 PF08402 TOBE domain CI104_RS13405 PF00005 ABC transporter CI104_RS13410 PF13416 Bacterial extracellular solute-binding protein CI104_RS13415 PF00155 Aminotransferase class I and II CI104_RS13415 PF00392 Bacterial regulatory proteins, gntR family CI104_RS13420 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CI104_RS13420 PF01381 Helix-turn-helix CI104_RS13425 PF07927 HicA toxin of bacterial toxin-antitoxin, CI104_RS13430 PF01654 Cytochrome bd terminal oxidase subunit I CI104_RS13435 PF02322 Cytochrome bd terminal oxidase subunit II CI104_RS13445 PF12392 Collagenase CI104_RS13445 PF01136 Peptidase family U32 CI104_RS13450 PF01381 Helix-turn-helix CI104_RS13450 PF07883 Cupin domain CI104_RS13455 PF03594 Benzoate membrane transport protein CI104_RS13460 PF12833 Helix-turn-helix domain CI104_RS13465 PF00892 EamA-like transporter family CI104_RS13470 PF11769 Protein of unknown function (DUF3313) CI104_RS13475 PF03848 Tellurite resistance protein TehB CI104_RS13480 PF03595 Voltage-dependent anion channel CI104_RS13485 PF18836 Beta solenoid repeat from YDCK CI104_RS13490 PF13302 Acetyltransferase (GNAT) domain CI104_RS13495 PF05343 M42 glutamyl aminopeptidase CI104_RS13500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS13505 PF03611 PTS system sugar-specific permease component CI104_RS13510 PF03437 BtpA family CI104_RS13515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS13520 PF00834 Ribulose-phosphate 3 epimerase family CI104_RS13525 PF08220 DeoR-like helix-turn-helix domain CI104_RS13525 PF00455 DeoR C terminal sensor domain CI104_RS13530 PF04325 Protein of unknown function (DUF465) CI104_RS13535 PF04349 Periplasmic glucan biosynthesis protein, MdoG CI104_RS13540 PF00135 Carboxylesterase family CI104_RS13545 PF07063 Domain of unknown function (DUF1338) CI104_RS13550 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CI104_RS13550 PF00775 Dioxygenase CI104_RS13555 PF00775 Dioxygenase CI104_RS13560 PF01368 DHH family CI104_RS13560 PF02833 DHHA2 domain CI104_RS13565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS13565 PF03466 LysR substrate binding domain CI104_RS13570 PF00672 HAMP domain CI104_RS13570 PF02203 Tar ligand binding domain homologue CI104_RS13570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS13580 PF00107 Zinc-binding dehydrogenase CI104_RS13580 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS13585 PF02583 Metal-sensitive transcriptional repressor CI104_RS13595 PF01292 Prokaryotic cytochrome b561 CI104_RS13600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CI104_RS13600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CI104_RS13605 PF00171 Aldehyde dehydrogenase family CI104_RS13610 PF02698 DUF218 domain CI104_RS13615 PF00083 Sugar (and other) transporter CI104_RS13625 PF13533 Biotin-lipoyl like CI104_RS13630 PF02321 Outer membrane efflux protein CI104_RS13635 PF00271 Helicase conserved C-terminal domain CI104_RS13635 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CI104_RS13635 PF04408 Helicase associated domain (HA2) CI104_RS13635 PF11898 Domain of unknown function (DUF3418) CI104_RS13635 PF00270 DEAD/DEAH box helicase CI104_RS13640 PF02525 Flavodoxin-like fold CI104_RS13650 PF00248 Aldo/keto reductase family CI104_RS13655 PF07027 Protein of unknown function (DUF1318) CI104_RS13660 PF13617 YnbE-like lipoprotein CI104_RS13665 PF11739 Dicarboxylate transport CI104_RS13680 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS13680 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS13685 PF00577 Outer membrane usher protein CI104_RS13685 PF13954 PapC N-terminal domain CI104_RS13685 PF13953 PapC C-terminal domain CI104_RS13690 PF00419 Fimbrial protein CI104_RS13705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CI104_RS13705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CI104_RS13710 PF03724 META domain CI104_RS13715 PF03891 Domain of unknown function (DUF333) CI104_RS13720 PF00877 NlpC/P60 family CI104_RS13725 PF10371 Domain of unknown function CI104_RS13725 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CI104_RS13725 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CI104_RS13725 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CI104_RS13725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS13730 PF00267 Gram-negative porin CI104_RS13740 PF00582 Universal stress protein family CI104_RS13745 PF01171 PP-loop family CI104_RS13750 PF00271 Helicase conserved C-terminal domain CI104_RS13750 PF03880 DbpA RNA binding domain CI104_RS13750 PF00270 DEAD/DEAH box helicase CI104_RS13760 PF01544 CorA-like Mg2+ transporter protein CI104_RS13765 PF02203 Tar ligand binding domain homologue CI104_RS13765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS13765 PF00672 HAMP domain CI104_RS13770 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS13770 PF00563 EAL domain CI104_RS13770 PF03707 Bacterial signalling protein N terminal repeat CI104_RS13780 PF02627 Carboxymuconolactone decarboxylase family CI104_RS13785 PF12146 Serine aminopeptidase, S33 CI104_RS13790 PF00206 Lyase CI104_RS13790 PF10397 Adenylosuccinate lyase C-terminus CI104_RS13795 PF02803 Thiolase, C-terminal domain CI104_RS13795 PF00108 Thiolase, N-terminal domain CI104_RS13800 PF01144 Coenzyme A transferase CI104_RS13805 PF01144 Coenzyme A transferase CI104_RS13810 PF01614 Bacterial transcriptional regulator CI104_RS13810 PF09339 IclR helix-turn-helix domain CI104_RS13815 PF01713 Smr domain CI104_RS13820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CI104_RS13820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CI104_RS13825 PF13545 Crp-like helix-turn-helix domain CI104_RS13825 PF00027 Cyclic nucleotide-binding domain CI104_RS13830 PF00582 Universal stress protein family CI104_RS13835 PF10749 Protein of unknown function (DUF2534) CI104_RS13840 PF00924 Mechanosensitive ion channel CI104_RS13845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CI104_RS13850 PF08220 DeoR-like helix-turn-helix domain CI104_RS13850 PF00455 DeoR C terminal sensor domain CI104_RS13855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS13860 PF00246 Zinc carboxypeptidase CI104_RS13865 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS13865 PF13378 Enolase C-terminal domain-like CI104_RS13870 PF08534 Redoxin CI104_RS13875 PF00158 Sigma-54 interaction domain CI104_RS13875 PF18024 Helix-turn-helix domain CI104_RS13880 PF05128 Domain of unknown function (DUF697) CI104_RS13885 PF04317 YcjX-like family, DUF463 CI104_RS13895 PF01032 FecCD transport family CI104_RS13900 PF00005 ABC transporter CI104_RS13905 PF07690 Major Facilitator Superfamily CI104_RS13915 PF00356 Bacterial regulatory proteins, lacI family CI104_RS13915 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS13920 PF09381 Outer membrane protein G (OmpG) CI104_RS13925 PF03459 TOBE domain CI104_RS13925 PF17912 MalK OB fold domain CI104_RS13925 PF00005 ABC transporter CI104_RS13930 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS13935 PF03636 Glycosyl hydrolase family 65, N-terminal domain CI104_RS13935 PF03633 Glycosyl hydrolase family 65, C-terminal domain CI104_RS13935 PF03632 Glycosyl hydrolase family 65 central catalytic domain CI104_RS13940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS13940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS13945 PF01261 Xylose isomerase-like TIM barrel CI104_RS13950 PF00107 Zinc-binding dehydrogenase CI104_RS13955 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS13960 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS13965 PF01547 Bacterial extracellular solute-binding protein CI104_RS13970 PF00128 Alpha amylase, catalytic domain CI104_RS13975 PF09584 Phage shock protein PspD (Phageshock_PspD) CI104_RS13980 PF04024 PspC domain CI104_RS13985 PF06667 Phage shock protein B CI104_RS13990 PF04012 PspA/IM30 family CI104_RS13995 PF02954 Bacterial regulatory protein, Fis family CI104_RS13995 PF00158 Sigma-54 interaction domain CI104_RS14000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS14005 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS14010 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS14010 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS14015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS14015 PF00005 ABC transporter CI104_RS14020 PF00005 ABC transporter CI104_RS14035 PF17876 Cold shock domain CI104_RS14035 PF00575 S1 RNA binding domain CI104_RS14035 PF08206 Ribonuclease B OB domain CI104_RS14035 PF00773 RNB domain CI104_RS14040 PF00563 EAL domain CI104_RS14040 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS14040 PF13426 PAS domain CI104_RS14050 PF00455 DeoR C terminal sensor domain CI104_RS14050 PF08220 DeoR-like helix-turn-helix domain CI104_RS14055 PF05433 Glycine zipper 2TM domain CI104_RS14060 PF01253 Translation initiation factor SUI1 CI104_RS14065 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CI104_RS14070 PF18073 Rubredoxin metal binding domain CI104_RS14075 PF06305 Lipopolysaccharide assembly protein A domain CI104_RS14080 PF01569 PAP2 superfamily CI104_RS14085 PF00925 GTP cyclohydrolase II CI104_RS14090 PF00694 Aconitase C-terminal domain CI104_RS14090 PF00330 Aconitase family (aconitate hydratase) CI104_RS14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS14100 PF03466 LysR substrate binding domain CI104_RS14105 PF01131 DNA topoisomerase CI104_RS14105 PF01396 Topoisomerase DNA binding C4 zinc finger CI104_RS14105 PF01751 Toprim domain CI104_RS14105 PF08272 Topoisomerase I zinc-ribbon-like CI104_RS14110 PF10692 Protein of unknown function (DUF2498) CI104_RS14115 PF01343 Peptidase family S49 CI104_RS14115 PF08496 Peptidase family S49 N-terminal CI104_RS14120 PF00106 short chain dehydrogenase CI104_RS14125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CI104_RS14130 PF00849 RNA pseudouridylate synthase CI104_RS14130 PF01479 S4 domain CI104_RS14135 PF03797 Autotransporter beta-domain CI104_RS14140 PF13737 Transposase DDE domain CI104_RS14155 PF03797 Autotransporter beta-domain CI104_RS14160 PF01300 Telomere recombination CI104_RS14165 PF02811 PHP domain CI104_RS14170 PF00425 chorismate binding enzyme CI104_RS14170 PF04715 Anthranilate synthase component I, N terminal region CI104_RS14175 PF00117 Glutamine amidotransferase class-I CI104_RS14175 PF02885 Glycosyl transferase family, helical bundle domain CI104_RS14175 PF00591 Glycosyl transferase family, a/b domain CI104_RS14180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CI104_RS14180 PF00218 Indole-3-glycerol phosphate synthase CI104_RS14185 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS14190 PF00290 Tryptophan synthase alpha chain CI104_RS14195 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS14200 PF03922 OmpW family CI104_RS14215 PF04279 Intracellular septation protein A CI104_RS14220 PF07715 TonB-dependent Receptor Plug Domain CI104_RS14220 PF00593 TonB dependent receptor CI104_RS14225 PF03061 Thioesterase superfamily CI104_RS14230 PF03544 Gram-negative bacterial TonB protein C-terminal CI104_RS14235 PF03795 YCII-related domain CI104_RS14245 PF13091 PLD-like domain CI104_RS14245 PF13396 Phospholipase_D-nuclease N-terminal CI104_RS14250 PF04269 Protein of unknown function, DUF440 CI104_RS14255 PF00520 Ion transport protein CI104_RS14255 PF00027 Cyclic nucleotide-binding domain CI104_RS14260 PF00005 ABC transporter CI104_RS14260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS14265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS14265 PF00005 ABC transporter CI104_RS14270 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS14270 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS14275 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS14280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS14290 PF01914 MarC family integral membrane protein CI104_RS14295 PF00465 Iron-containing alcohol dehydrogenase CI104_RS14295 PF00171 Aldehyde dehydrogenase family CI104_RS14300 PF00265 Thymidine kinase CI104_RS14305 PF00816 H-NS histone family CI104_RS14310 PF00483 Nucleotidyl transferase CI104_RS14315 PF00072 Response regulator receiver domain CI104_RS14320 PF01734 Patatin-like phospholipase CI104_RS14325 PF02810 SEC-C motif CI104_RS14330 PF00551 Formyl transferase CI104_RS14330 PF01842 ACT domain CI104_RS14345 PF02665 Nitrate reductase gamma subunit CI104_RS14350 PF02613 Nitrate reductase delta subunit CI104_RS14355 PF13247 4Fe-4S dicluster domain CI104_RS14355 PF14711 Respiratory nitrate reductase beta C-terminal CI104_RS14360 PF00384 Molybdopterin oxidoreductase CI104_RS14360 PF01568 Molydopterin dinucleotide binding domain CI104_RS14360 PF14710 Respiratory nitrate reductase alpha N-terminal CI104_RS14365 PF07690 Major Facilitator Superfamily CI104_RS14375 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CI104_RS14375 PF07730 Histidine kinase CI104_RS14375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS14375 PF00672 HAMP domain CI104_RS14380 PF00072 Response regulator receiver domain CI104_RS14380 PF00196 Bacterial regulatory proteins, luxR family CI104_RS14385 PF11924 Inverse autotransporter, beta-domain CI104_RS14390 PF02635 DsrE/DsrF-like family CI104_RS14400 PF04752 ChaC-like protein CI104_RS14405 PF06150 ChaB CI104_RS14410 PF01699 Sodium/calcium exchanger protein CI104_RS14415 PF00793 DAHP synthetase I family CI104_RS14420 PF13369 Transglutaminase-like superfamily CI104_RS14425 PF04247 Invasion gene expression up-regulator, SirB CI104_RS14430 PF17827 PrmC N-terminal domain CI104_RS14430 PF13847 Methyltransferase domain CI104_RS14435 PF03462 PCRF domain CI104_RS14435 PF00472 RF-1 domain CI104_RS14440 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CI104_RS14440 PF01488 Shikimate / quinate 5-dehydrogenase CI104_RS14440 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CI104_RS14445 PF03550 Outer membrane lipoprotein LolB CI104_RS14450 PF00288 GHMP kinases N terminal domain CI104_RS14450 PF08544 GHMP kinases C terminal CI104_RS14460 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CI104_RS14460 PF14572 Phosphoribosyl synthetase-associated domain CI104_RS14465 PF01740 STAS domain CI104_RS14465 PF00916 Sulfate permease family CI104_RS14475 PF01497 Periplasmic binding protein CI104_RS14480 PF01032 FecCD transport family CI104_RS14485 PF00005 ABC transporter CI104_RS14490 PF00127 Copper binding proteins, plastocyanin/azurin family CI104_RS14495 PF00355 Rieske [2Fe-2S] domain CI104_RS14495 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CI104_RS14500 PF00032 Cytochrome b(C-terminal)/b6/petD CI104_RS14500 PF02167 Cytochrome C1 family CI104_RS14500 PF00033 Cytochrome b/b6/petB CI104_RS14505 PF02167 Cytochrome C1 family CI104_RS14510 PF10762 Protein of unknown function (DUF2583) CI104_RS14515 PF01195 Peptidyl-tRNA hydrolase CI104_RS14520 PF06071 Protein of unknown function (DUF933) CI104_RS14520 PF01926 50S ribosome-binding GTPase CI104_RS14525 PF00672 HAMP domain CI104_RS14525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS14525 PF02203 Tar ligand binding domain homologue CI104_RS14535 PF00873 AcrB/AcrD/AcrF family CI104_RS14540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS14540 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS14545 PF12833 Helix-turn-helix domain CI104_RS14550 PF07702 UTRA domain CI104_RS14550 PF00392 Bacterial regulatory proteins, gntR family CI104_RS14555 PF01791 DeoC/LacD family aldolase CI104_RS14570 PF00989 PAS fold CI104_RS14570 PF00158 Sigma-54 interaction domain CI104_RS14570 PF02954 Bacterial regulatory protein, Fis family CI104_RS14575 PF02733 Dak1 domain CI104_RS14580 PF02734 DAK2 domain CI104_RS14585 PF00381 PTS HPr component phosphorylation site CI104_RS14585 PF00391 PEP-utilising enzyme, mobile domain CI104_RS14585 PF05524 PEP-utilising enzyme, N-terminal CI104_RS14585 PF03610 PTS system fructose IIA component CI104_RS14590 PF01204 Trehalase CI104_RS14595 PF00593 TonB dependent receptor CI104_RS14595 PF07715 TonB-dependent Receptor Plug Domain CI104_RS14600 PF04226 Transglycosylase associated protein CI104_RS14605 PF07238 PilZ domain CI104_RS14605 PF07317 Flagellar regulator YcgR CI104_RS14610 PF01464 Transglycosylase SLT domain CI104_RS14615 PF02016 LD-carboxypeptidase N-terminal domain CI104_RS14615 PF17676 LD-carboxypeptidase C-terminal domain CI104_RS14620 PF02080 TrkA-C domain CI104_RS14620 PF00999 Sodium/hydrogen exchanger family CI104_RS14620 PF03471 Transporter associated domain CI104_RS14625 PF00842 Alanine racemase, C-terminal domain CI104_RS14625 PF01168 Alanine racemase, N-terminal domain CI104_RS14630 PF01266 FAD dependent oxidoreductase CI104_RS14635 PF04293 SpoVR like protein CI104_RS14640 PF00392 Bacterial regulatory proteins, gntR family CI104_RS14640 PF07840 FadR C-terminal domain CI104_RS14645 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CI104_RS14650 PF02600 Disulfide bond formation protein DsbB CI104_RS14655 PF03692 Putative zinc- or iron-chelating domain CI104_RS14660 PF01557 Fumarylacetoacetate (FAA) hydrolase family CI104_RS14665 PF05166 YcgL domain CI104_RS14670 PF03775 Septum formation inhibitor MinC, C-terminal domain CI104_RS14670 PF05209 Septum formation inhibitor MinC, N-terminal domain CI104_RS14675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CI104_RS14680 PF03776 Septum formation topological specificity factor MinE CI104_RS14690 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CI104_RS14695 PF00582 Universal stress protein family CI104_RS14700 PF03466 LysR substrate binding domain CI104_RS14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS14715 PF02796 Helix-turn-helix domain of resolvase CI104_RS14715 PF00239 Resolvase, N terminal domain CI104_RS14730 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS14740 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS14745 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CI104_RS14755 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CI104_RS14760 PF04865 Baseplate J-like protein CI104_RS14790 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 CI104_RS14800 PF04984 Phage tail sheath protein subtilisin-like domain CI104_RS14800 PF17482 Phage tail sheath C-terminal domain CI104_RS14830 PF10124 Mu-like prophage major head subunit gpT CI104_RS14850 PF03237 Terminase-like family CI104_RS14855 PF11985 Protein of unknown function (DUF3486) CI104_RS14870 PF08461 Ribonuclease R winged-helix domain CI104_RS14910 PF08765 Mor transcription activator family CI104_RS14930 PF07352 Bacteriophage Mu Gam like protein CI104_RS14945 PF13401 AAA domain CI104_RS14945 PF09077 Mu B transposition protein, C terminal CI104_RS14950 PF09299 Mu transposase, C-terminal CI104_RS14950 PF09039 Mu DNA binding, I gamma subdomain CI104_RS14950 PF02316 Mu DNA-binding domain CI104_RS14950 PF02914 Bacteriophage Mu transposase CI104_RS14965 PF06610 L-alanine exporter CI104_RS14975 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS14980 PF01042 Endoribonuclease L-PSP CI104_RS14990 PF11798 IMS family HHH motif CI104_RS14990 PF11799 impB/mucB/samB family C-terminal domain CI104_RS14990 PF13438 Domain of unknown function (DUF4113) CI104_RS14990 PF00817 impB/mucB/samB family CI104_RS15000 PF02502 Ribose/Galactose Isomerase CI104_RS15005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CI104_RS15005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS15010 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS15015 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS15020 PF00005 ABC transporter CI104_RS15025 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS15030 PF00717 Peptidase S24-like CI104_RS15035 PF08956 Domain of unknown function (DUF1869) CI104_RS15040 PF09313 Domain of unknown function (DUF1971) CI104_RS15045 PF01810 LysE type translocator CI104_RS15050 PF03466 LysR substrate binding domain CI104_RS15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS15055 PF00180 Isocitrate/isopropylmalate dehydrogenase CI104_RS15060 PF01612 3'-5' exonuclease CI104_RS15060 PF00570 HRDC domain CI104_RS15065 PF00501 AMP-binding enzyme CI104_RS15065 PF13193 AMP-binding enzyme C-terminal domain CI104_RS15070 PF03843 Outer membrane lipoprotein Slp family CI104_RS15075 PF00814 Glycoprotease family CI104_RS15080 PF13307 Helicase C-terminal domain CI104_RS15080 PF04851 Type III restriction enzyme, res subunit CI104_RS15085 PF01042 Endoribonuclease L-PSP CI104_RS15090 PF03701 Uncharacterised protein family (UPF0181) CI104_RS15095 PF00425 chorismate binding enzyme CI104_RS15095 PF04715 Anthranilate synthase component I, N terminal region CI104_RS15100 PF00293 NUDIX domain CI104_RS15105 PF03315 Serine dehydratase beta chain CI104_RS15105 PF03313 Serine dehydratase alpha chain CI104_RS15110 PF00563 EAL domain CI104_RS15110 PF12792 CSS motif domain associated with EAL CI104_RS15115 PF03471 Transporter associated domain CI104_RS15115 PF03741 Integral membrane protein TerC family CI104_RS15125 PF03610 PTS system fructose IIA component CI104_RS15125 PF03830 PTS system sorbose subfamily IIB component CI104_RS15130 PF03609 PTS system sorbose-specific iic component CI104_RS15135 PF03613 PTS system mannose/fructose/sorbose family IID component CI104_RS15140 PF06173 Protein of unknown function (DUF986) CI104_RS15150 PF02659 Putative manganese efflux pump CI104_RS15155 PF13847 Methyltransferase domain CI104_RS15160 PF00905 Penicillin binding protein transpeptidase domain CI104_RS15160 PF03717 Penicillin-binding Protein dimerisation domain CI104_RS15165 PF00313 'Cold-shock' DNA-binding domain CI104_RS15170 PF10736 Protein of unknown function (DUF2627) CI104_RS15180 PF13974 YebO-like protein CI104_RS15185 PF13998 MgrB protein CI104_RS15190 PF13996 YobH-like protein CI104_RS15195 PF09339 IclR helix-turn-helix domain CI104_RS15195 PF01614 Bacterial transcriptional regulator CI104_RS15200 PF07690 Major Facilitator Superfamily CI104_RS15205 PF01435 Peptidase family M48 CI104_RS15210 PF00595 PDZ domain CI104_RS15210 PF11818 C-terminal domain of tail specific protease (DUF3340) CI104_RS15210 PF17804 Tail specific protease N-terminal domain CI104_RS15210 PF03572 Peptidase family S41 CI104_RS15215 PF17516 ProQ C-terminal domain CI104_RS15215 PF04352 ProQ/FINO family CI104_RS15220 PF13185 GAF domain CI104_RS15225 PF04403 Paraquat-inducible protein A CI104_RS15230 PF02470 MlaD protein CI104_RS15235 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CI104_RS15235 PF01189 16S rRNA methyltransferase RsmB/F CI104_RS15235 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CI104_RS15240 PF07351 Protein of unknown function (DUF1480) CI104_RS15245 PF07358 Protein of unknown function (DUF1482) CI104_RS15250 PF00149 Calcineurin-like phosphoesterase CI104_RS15255 PF10709 Protein of unknown function (DUF2511) CI104_RS15260 PF05425 Copper resistance protein D CI104_RS15265 PF04234 CopC domain CI104_RS15270 PF06440 DNA polymerase III, theta subunit CI104_RS15275 PF00795 Carbon-nitrogen hydrolase CI104_RS15280 PF00929 Exonuclease CI104_RS15285 PF00326 Prolyl oligopeptidase family CI104_RS15285 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CI104_RS15290 PF04391 Protein of unknown function (DUF533) CI104_RS15295 PF13995 YebF-like protein CI104_RS15300 PF07130 YebG protein CI104_RS15305 PF02222 ATP-grasp domain CI104_RS15310 PF01081 KDPG and KHG aldolase CI104_RS15315 PF00920 Dehydratase family CI104_RS15320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CI104_RS15320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CI104_RS15325 PF01418 Helix-turn-helix domain, rpiR family CI104_RS15325 PF01380 SIS domain CI104_RS15330 PF00224 Pyruvate kinase, barrel domain CI104_RS15330 PF02887 Pyruvate kinase, alpha/beta domain CI104_RS15335 PF03279 Bacterial lipid A biosynthesis acyltransferase CI104_RS15340 PF08525 Opacity-associated protein A N-terminal motif CI104_RS15340 PF01551 Peptidase family M23 CI104_RS15340 PF01476 LysM domain CI104_RS15345 PF01297 Zinc-uptake complex component A periplasmic CI104_RS15350 PF00005 ABC transporter CI104_RS15355 PF00950 ABC 3 transport family CI104_RS15360 PF05491 RuvB C-terminal winged helix domain CI104_RS15360 PF05496 Holliday junction DNA helicase RuvB P-loop domain CI104_RS15360 PF17864 RuvB AAA lid domain CI104_RS15365 PF01330 RuvA N terminal domain CI104_RS15365 PF07499 RuvA, C-terminal domain CI104_RS15370 PF02075 Crossover junction endodeoxyribonuclease RuvC CI104_RS15375 PF01709 Transcriptional regulator CI104_RS15380 PF00293 NUDIX domain CI104_RS15385 PF01336 OB-fold nucleic acid binding domain CI104_RS15385 PF00152 tRNA synthetases class II (D, K and N) CI104_RS15385 PF02938 GAD domain CI104_RS15390 PF00857 Isochorismatase family CI104_RS15395 PF01904 Protein of unknown function DUF72 CI104_RS15400 PF01124 MAPEG family CI104_RS15405 PF13649 Methyltransferase domain CI104_RS15410 PF08003 Protein of unknown function (DUF1698) CI104_RS15415 PF03932 CutC family CI104_RS15420 PF06185 YecM protein CI104_RS15425 PF03485 Arginyl tRNA synthetase N terminal domain CI104_RS15425 PF00750 tRNA synthetases class I (R) CI104_RS15425 PF05746 DALR anticodon binding domain CI104_RS15430 PF07470 Glycosyl Hydrolase Family 88 CI104_RS15440 PF06366 Flagellar protein FlhE CI104_RS15445 PF00771 FHIPEP family CI104_RS15450 PF01312 FlhB HrpN YscU SpaS Family CI104_RS15460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS15460 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS15465 PF13953 PapC C-terminal domain CI104_RS15465 PF13954 PapC N-terminal domain CI104_RS15465 PF00577 Outer membrane usher protein CI104_RS15470 PF00419 Fimbrial protein CI104_RS15475 PF04344 Chemotaxis phosphatase, CheZ CI104_RS15480 PF00072 Response regulator receiver domain CI104_RS15485 PF00072 Response regulator receiver domain CI104_RS15485 PF01339 CheB methylesterase CI104_RS15490 PF01739 CheR methyltransferase, SAM binding domain CI104_RS15490 PF03705 CheR methyltransferase, all-alpha domain CI104_RS15495 PF00672 HAMP domain CI104_RS15495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS15495 PF02203 Tar ligand binding domain homologue CI104_RS15500 PF00672 HAMP domain CI104_RS15500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS15500 PF02203 Tar ligand binding domain homologue CI104_RS15530 PF00375 Sodium:dicarboxylate symporter family CI104_RS15535 PF01584 CheW-like domain CI104_RS15545 PF13677 Membrane MotB of proton-channel complex MotA/MotB CI104_RS15545 PF00691 OmpA family CI104_RS15550 PF01618 MotA/TolQ/ExbB proton channel family CI104_RS15555 PF05280 Flagellar transcriptional activator (FlhC) CI104_RS15560 PF05247 Flagellar transcriptional activator (FlhD) CI104_RS15565 PF00582 Universal stress protein family CI104_RS15570 PF00982 Glycosyltransferase family 20 CI104_RS15575 PF02358 Trehalose-phosphatase CI104_RS15580 PF02653 Branched-chain amino acid transport system / permease component CI104_RS15585 PF00005 ABC transporter CI104_RS15590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS15605 PF00210 Ferritin-like domain CI104_RS15610 PF10964 Protein of unknown function (DUF2766) CI104_RS15620 PF07690 Major Facilitator Superfamily CI104_RS15630 PF13992 YecR-like lipoprotein CI104_RS15635 PF00210 Ferritin-like domain CI104_RS15640 PF10678 Protein of unknown function (DUF2492) CI104_RS15645 PF03222 Tryptophan/tyrosine permease family CI104_RS15650 PF02810 SEC-C motif CI104_RS15650 PF03695 Uncharacterised protein family (UPF0149) CI104_RS15675 PF12833 Helix-turn-helix domain CI104_RS15675 PF12852 Cupin CI104_RS15680 PF03797 Autotransporter beta-domain CI104_RS15685 PF07859 alpha/beta hydrolase fold CI104_RS15700 PF06629 MltA-interacting protein MipA CI104_RS15745 PF01066 CDP-alcohol phosphatidyltransferase CI104_RS15750 PF02151 UvrB/uvrC motif CI104_RS15750 PF08459 UvrC Helix-hairpin-helix N-terminal CI104_RS15750 PF01541 GIY-YIG catalytic domain CI104_RS15755 PF00072 Response regulator receiver domain CI104_RS15755 PF00196 Bacterial regulatory proteins, luxR family CI104_RS15760 PF10769 Protein of unknown function (DUF2594) CI104_RS15765 PF03472 Autoinducer binding domain CI104_RS15765 PF00196 Bacterial regulatory proteins, luxR family CI104_RS15770 PF00005 ABC transporter CI104_RS15775 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS15780 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS15785 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS15790 PF02899 Phage integrase, N-terminal SAM-like domain CI104_RS15795 PF04545 Sigma-70, region 4 CI104_RS15795 PF04542 Sigma-70 region 2 CI104_RS15795 PF04539 Sigma-70 region 3 CI104_RS15800 PF00700 Bacterial flagellin C-terminal helical region CI104_RS15800 PF08884 Flagellin D3 domain CI104_RS15800 PF00669 Bacterial flagellin N-terminal helical region CI104_RS15805 PF07196 Flagellin hook IN motif CI104_RS15805 PF07195 Flagellar hook-associated protein 2 C-terminus CI104_RS15805 PF02465 Flagellar hook-associated protein 2 N-terminus CI104_RS15810 PF02561 Flagellar protein FliS CI104_RS15815 PF05400 Flagellar protein FliT CI104_RS15820 PF02806 Alpha amylase, C-terminal all-beta domain CI104_RS15820 PF00128 Alpha amylase, catalytic domain CI104_RS15825 PF13987 YedD-like protein CI104_RS15830 PF04143 Sulphur transport CI104_RS15835 PF01206 Sulfurtransferase TusA CI104_RS15840 PF02049 Flagellar hook-basal body complex protein FliE CI104_RS15845 PF08345 Flagellar M-ring protein C-terminal CI104_RS15845 PF01514 Secretory protein of YscJ/FliF family CI104_RS15850 PF01706 FliG C-terminal domain CI104_RS15850 PF14841 FliG middle domain CI104_RS15850 PF14842 FliG N-terminal domain CI104_RS15855 PF02108 Flagellar assembly protein FliH CI104_RS15860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CI104_RS15860 PF18269 T3SS EscN ATPase C-terminal domain CI104_RS15865 PF02050 Flagellar FliJ protein CI104_RS15870 PF02120 Flagellar hook-length control protein FliK CI104_RS15875 PF03748 Flagellar basal body-associated protein FliL CI104_RS15880 PF02154 Flagellar motor switch protein FliM CI104_RS15880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CI104_RS15885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CI104_RS15885 PF16973 Flagellar motor switch protein FliN N-terminal CI104_RS15890 PF04347 Flagellar biosynthesis protein, FliO CI104_RS15895 PF00813 FliP family CI104_RS15900 PF01313 Bacterial export proteins, family 3 CI104_RS15905 PF01311 Bacterial export proteins, family 1 CI104_RS15910 PF00196 Bacterial regulatory proteins, luxR family CI104_RS15915 PF10781 Dextransucrase DSRB CI104_RS15920 PF10733 Protein of unknown function (DUF2525) CI104_RS15930 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS15930 PF17151 Periplasmic sensor domain CI104_RS15935 PF09926 Uncharacterized small protein (DUF2158) CI104_RS15940 PF05661 Protein of unknown function (DUF808) CI104_RS15945 PF00892 EamA-like transporter family CI104_RS15950 PF03852 DNA mismatch endonuclease Vsr CI104_RS15955 PF00145 C-5 cytosine-specific DNA methylase CI104_RS15955 PF18284 DNA methylase N-terminal domain CI104_RS15960 PF01966 HD domain CI104_RS15970 PF00267 Gram-negative porin CI104_RS15975 PF03797 Autotransporter beta-domain CI104_RS15975 PF03212 Pertactin CI104_RS15985 PF06167 Glucose-regulated metallo-peptidase M90 CI104_RS15995 PF03466 LysR substrate binding domain CI104_RS15995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS16000 PF03466 LysR substrate binding domain CI104_RS16000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS16010 PF07690 Major Facilitator Superfamily CI104_RS16010 PF00083 Sugar (and other) transporter CI104_RS16015 PF01048 Phosphorylase superfamily CI104_RS16015 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CI104_RS16020 PF13361 UvrD-like helicase C-terminal domain CI104_RS16020 PF00580 UvrD/REP helicase N-terminal domain CI104_RS16020 PF12705 PD-(D/E)XK nuclease superfamily CI104_RS16050 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CI104_RS16060 PF01554 MatE CI104_RS16070 PF03734 L,D-transpeptidase catalytic domain CI104_RS16070 PF17969 L,D-transpeptidase C-terminal domain CI104_RS16075 PF02277 Phosphoribosyltransferase CI104_RS16080 PF02654 Cobalamin-5-phosphate synthase CI104_RS16085 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CI104_RS16090 PF07685 CobB/CobQ-like glutamine amidotransferase domain CI104_RS16095 PF00005 ABC transporter CI104_RS16100 PF02361 Cobalt transport protein CI104_RS16105 PF02553 Cobalt transport protein component CbiN CI104_RS16110 PF01891 Cobalt uptake substrate-specific transmembrane region CI104_RS16115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS16120 PF06180 Cobalt chelatase (CbiK) CI104_RS16125 PF02571 Precorrin-6x reductase CbiJ/CobK CI104_RS16130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS16135 PF11760 Cobalamin synthesis G N-terminal CI104_RS16135 PF11761 Cobalamin biosynthesis central region CI104_RS16135 PF01890 Cobalamin synthesis G C-terminus CI104_RS16140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS16145 PF05175 Methyltransferase small domain CI104_RS16150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CI104_RS16155 PF01888 CbiD CI104_RS16160 PF02570 Precorrin-8X methylmutase CI104_RS16165 PF03186 CobD/Cbib protein CI104_RS16170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CI104_RS16170 PF07685 CobB/CobQ-like glutamine amidotransferase domain CI104_RS16175 PF10114 Sensory domain found in PocR CI104_RS16175 PF12833 Helix-turn-helix domain CI104_RS16180 PF00230 Major intrinsic protein CI104_RS16185 PF00936 BMC domain CI104_RS16190 PF00936 BMC domain CI104_RS16195 PF02286 Dehydratase large subunit CI104_RS16200 PF02288 Dehydratase medium subunit CI104_RS16205 PF02287 Dehydratase small subunit CI104_RS16210 PF08841 Diol dehydratase reactivase ATPase-like domain CI104_RS16210 PF18427 DD-reactivating factor swiveling domain CI104_RS16220 PF00936 BMC domain CI104_RS16225 PF00936 BMC domain CI104_RS16230 PF06130 Phosphate propanoyltransferase CI104_RS16240 PF03319 Ethanolamine utilisation protein EutN/carboxysome CI104_RS16245 PF01923 Cobalamin adenosyltransferase CI104_RS16250 PF00171 Aldehyde dehydrogenase family CI104_RS16255 PF00465 Iron-containing alcohol dehydrogenase CI104_RS16260 PF10531 SLBB domain CI104_RS16260 PF13375 RnfC Barrel sandwich hybrid domain CI104_RS16260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CI104_RS16260 PF13237 4Fe-4S dicluster domain CI104_RS16270 PF00936 BMC domain CI104_RS16275 PF10662 Ethanolamine utilisation - propanediol utilisation CI104_RS16280 PF00871 Acetokinase family CI104_RS16285 PF00288 GHMP kinases N terminal domain CI104_RS16290 PF04363 Protein of unknown function (DUF496) CI104_RS16295 PF04632 Fusaric acid resistance protein family CI104_RS16300 PF06445 GyrI-like small molecule binding domain CI104_RS16305 PF07943 Penicillin-binding protein 5, C-terminal domain CI104_RS16305 PF00768 D-alanyl-D-alanine carboxypeptidase CI104_RS16310 PF08411 Exonuclease C-terminal CI104_RS16310 PF00929 Exonuclease CI104_RS16315 PF01206 Sulfurtransferase TusA CI104_RS16320 PF04143 Sulphur transport CI104_RS16325 PF13520 Amino acid permease CI104_RS16330 PF03466 LysR substrate binding domain CI104_RS16330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS16335 PF01370 NAD dependent epimerase/dehydratase family CI104_RS16345 PF01634 ATP phosphoribosyltransferase CI104_RS16345 PF08029 HisG, C-terminal domain CI104_RS16350 PF00815 Histidinol dehydrogenase CI104_RS16355 PF00155 Aminotransferase class I and II CI104_RS16360 PF00475 Imidazoleglycerol-phosphate dehydratase CI104_RS16365 PF00117 Glutamine amidotransferase class-I CI104_RS16370 PF00977 Histidine biosynthesis protein CI104_RS16375 PF00977 Histidine biosynthesis protein CI104_RS16380 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CI104_RS16380 PF01502 Phosphoribosyl-AMP cyclohydrolase CI104_RS16385 PF02706 Chain length determinant protein CI104_RS16390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CI104_RS16390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CI104_RS16395 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CI104_RS16395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS16400 PF02719 Polysaccharide biosynthesis protein CI104_RS16405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CI104_RS16420 PF02397 Bacterial sugar transferase CI104_RS16430 PF02350 UDP-N-acetylglucosamine 2-epimerase CI104_RS16435 PF01370 NAD dependent epimerase/dehydratase family CI104_RS16440 PF08485 Polysaccharide biosynthesis protein C-terminal CI104_RS16440 PF02719 Polysaccharide biosynthesis protein CI104_RS16460 PF00483 Nucleotidyl transferase CI104_RS16470 PF13439 Glycosyltransferase Family 4 CI104_RS16470 PF00534 Glycosyl transferases group 1 CI104_RS16475 PF04230 Polysaccharide pyruvyl transferase CI104_RS16485 PF02397 Bacterial sugar transferase CI104_RS16490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CI104_RS16490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CI104_RS16490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CI104_RS16490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CI104_RS16495 PF01050 Mannose-6-phosphate isomerase CI104_RS16495 PF00483 Nucleotidyl transferase CI104_RS16500 PF00534 Glycosyl transferases group 1 CI104_RS16500 PF13579 Glycosyl transferase 4-like domain CI104_RS16505 PF00293 NUDIX domain CI104_RS16510 PF01370 NAD dependent epimerase/dehydratase family CI104_RS16515 PF16363 GDP-mannose 4,6 dehydratase CI104_RS16520 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS16525 PF00535 Glycosyl transferase family 2 CI104_RS16535 PF13439 Glycosyltransferase Family 4 CI104_RS16535 PF00534 Glycosyl transferases group 1 CI104_RS16540 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS16545 PF00535 Glycosyl transferase family 2 CI104_RS16550 PF13807 G-rich domain on putative tyrosine kinase CI104_RS16550 PF02706 Chain length determinant protein CI104_RS16550 PF13614 AAA domain CI104_RS16555 PF01451 Low molecular weight phosphotyrosine protein phosphatase CI104_RS16560 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CI104_RS16560 PF10531 SLBB domain CI104_RS16560 PF02563 Polysaccharide biosynthesis/export protein CI104_RS16570 PF00571 CBS domain CI104_RS16570 PF03741 Integral membrane protein TerC family CI104_RS16570 PF03471 Transporter associated domain CI104_RS16575 PF05170 AsmA family CI104_RS16580 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CI104_RS16585 PF00485 Phosphoribulokinase / Uridine kinase family CI104_RS16590 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS16590 PF05231 MASE1 CI104_RS16590 PF08447 PAS fold CI104_RS16590 PF00563 EAL domain CI104_RS16590 PF13426 PAS domain CI104_RS16590 PF08448 PAS fold CI104_RS16595 PF06029 AlkA N-terminal domain CI104_RS16595 PF00730 HhH-GPD superfamily base excision DNA repair protein CI104_RS16600 PF00012 Hsp70 protein CI104_RS16605 PF13533 Biotin-lipoyl like CI104_RS16610 PF00873 AcrB/AcrD/AcrF family CI104_RS16615 PF00873 AcrB/AcrD/AcrF family CI104_RS16620 PF07690 Major Facilitator Superfamily CI104_RS16625 PF00672 HAMP domain CI104_RS16625 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS16630 PF00072 Response regulator receiver domain CI104_RS16630 PF00486 Transcriptional regulatory protein, C terminal CI104_RS16635 PF16325 Peptidase family U32 C-terminal domain CI104_RS16635 PF01136 Peptidase family U32 CI104_RS16640 PF00781 Diacylglycerol kinase catalytic domain CI104_RS16645 PF01791 DeoC/LacD family aldolase CI104_RS16655 PF03825 Nucleoside H+ symporter CI104_RS16660 PF03747 ADP-ribosylglycohydrolase CI104_RS16665 PF00294 pfkB family carbohydrate kinase CI104_RS16670 PF07702 UTRA domain CI104_RS16670 PF00392 Bacterial regulatory proteins, gntR family CI104_RS16675 PF08543 Phosphomethylpyrimidine kinase CI104_RS16680 PF02110 Hydroxyethylthiazole kinase family CI104_RS16695 PF11776 Nickel/cobalt transporter regulator CI104_RS16700 PF10609 NUBPL iron-transfer P-loop NTPase CI104_RS16705 PF01588 Putative tRNA binding domain CI104_RS16705 PF09334 tRNA synthetases class I (M) CI104_RS16710 PF06998 Protein of unknown function (DUF1307) CI104_RS16715 PF07308 Protein of unknown function (DUF1456) CI104_RS16720 PF00072 Response regulator receiver domain CI104_RS16720 PF04397 LytTr DNA-binding domain CI104_RS16725 PF07694 5TMR of 5TMR-LYT CI104_RS16725 PF06580 Histidine kinase CI104_RS16730 PF13411 MerR HTH family regulatory protein CI104_RS16740 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS16745 PF00005 ABC transporter CI104_RS16750 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS16755 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CI104_RS16760 PF00933 Glycosyl hydrolase family 3 N terminal domain CI104_RS16760 PF01915 Glycosyl hydrolase family 3 C-terminal domain CI104_RS16760 PF14310 Fibronectin type III-like domain CI104_RS16765 PF09330 D-lactate dehydrogenase, membrane binding CI104_RS16765 PF01565 FAD binding domain CI104_RS16775 PF00768 D-alanyl-D-alanine carboxypeptidase CI104_RS16785 PF04893 Yip1 domain CI104_RS16790 PF09335 SNARE associated Golgi protein CI104_RS16800 PF01207 Dihydrouridine synthase (Dus) CI104_RS16805 PF01494 FAD binding domain CI104_RS16810 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS16810 PF14497 Glutathione S-transferase, C-terminal domain CI104_RS16815 PF01557 Fumarylacetoacetate (FAA) hydrolase family CI104_RS16820 PF07883 Cupin domain CI104_RS16825 PF07690 Major Facilitator Superfamily CI104_RS16830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS16830 PF03466 LysR substrate binding domain CI104_RS16835 PF03788 LrgA family CI104_RS16840 PF04172 LrgB-like family CI104_RS16845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CI104_RS16845 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CI104_RS16850 PF02698 DUF218 domain CI104_RS16860 PF02653 Branched-chain amino acid transport system / permease component CI104_RS16865 PF00005 ABC transporter CI104_RS16870 PF13407 Periplasmic binding protein domain CI104_RS16875 PF00356 Bacterial regulatory proteins, lacI family CI104_RS16885 PF04235 Protein of unknown function (DUF418) CI104_RS16890 PF01227 GTP cyclohydrolase I CI104_RS16900 PF00756 Putative esterase CI104_RS16905 PF07715 TonB-dependent Receptor Plug Domain CI104_RS16905 PF00593 TonB dependent receptor CI104_RS16910 PF00324 Amino acid permease CI104_RS16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS16920 PF03466 LysR substrate binding domain CI104_RS16925 PF03601 Conserved hypothetical protein 698 CI104_RS16930 PF01261 Xylose isomerase-like TIM barrel CI104_RS16935 PF00294 pfkB family carbohydrate kinase CI104_RS16940 PF01773 Na+ dependent nucleoside transporter N-terminus CI104_RS16940 PF07662 Na+ dependent nucleoside transporter C-terminus CI104_RS16945 PF04227 Indigoidine synthase A like protein CI104_RS16950 PF00294 pfkB family carbohydrate kinase CI104_RS16955 PF02378 Phosphotransferase system, EIIC CI104_RS16955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS16960 PF00294 pfkB family carbohydrate kinase CI104_RS16965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS16965 PF00381 PTS HPr component phosphorylation site CI104_RS16970 PF07690 Major Facilitator Superfamily CI104_RS16975 PF03692 Putative zinc- or iron-chelating domain CI104_RS16980 PF09285 Elongation factor P, C-terminal CI104_RS16980 PF08207 Elongation factor P (EF-P) KOW-like domain CI104_RS16980 PF01132 Elongation factor P (EF-P) OB domain CI104_RS16985 PF03786 D-mannonate dehydratase (UxuA) CI104_RS16990 PF08125 Mannitol dehydrogenase C-terminal domain CI104_RS16990 PF01232 Mannitol dehydrogenase Rossmann domain CI104_RS16995 PF07683 Cobalamin synthesis protein cobW C-terminal domain CI104_RS16995 PF02492 CobW/HypB/UreG, nucleotide-binding domain CI104_RS17000 PF01569 PAP2 superfamily CI104_RS17010 PF00877 NlpC/P60 family CI104_RS17015 PF00563 EAL domain CI104_RS17015 PF12792 CSS motif domain associated with EAL CI104_RS17020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS17025 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS17030 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS17030 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS17035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS17035 PF00005 ABC transporter CI104_RS17040 PF13989 YejG-like protein CI104_RS17050 PF07690 Major Facilitator Superfamily CI104_RS17055 PF01479 S4 domain CI104_RS17055 PF00849 RNA pseudouridylate synthase CI104_RS17060 PF00271 Helicase conserved C-terminal domain CI104_RS17060 PF04851 Type III restriction enzyme, res subunit CI104_RS17065 PF01386 Ribosomal L25p family CI104_RS17070 PF04245 37-kD nucleoid-associated bacterial protein CI104_RS17075 PF07208 Protein of unknown function (DUF1414) CI104_RS17080 PF00884 Sulfatase CI104_RS17080 PF11893 Domain of unknown function (DUF3413) CI104_RS17090 PF04138 GtrA-like protein CI104_RS17095 PF00535 Glycosyl transferase family 2 CI104_RS17105 PF00072 Response regulator receiver domain CI104_RS17105 PF00196 Bacterial regulatory proteins, luxR family CI104_RS17110 PF03918 Cytochrome C biogenesis protein CI104_RS17115 PF08534 Redoxin CI104_RS17120 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CI104_RS17120 PF01578 Cytochrome C assembly protein CI104_RS17125 PF03100 CcmE CI104_RS17130 PF04995 Heme exporter protein D (CcmD) CI104_RS17135 PF01578 Cytochrome C assembly protein CI104_RS17140 PF03379 CcmB protein CI104_RS17145 PF00005 ABC transporter CI104_RS17150 PF03264 NapC/NirT cytochrome c family, N-terminal region CI104_RS17155 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CI104_RS17160 PF12801 4Fe-4S binding domain CI104_RS17160 PF13237 4Fe-4S dicluster domain CI104_RS17165 PF12800 4Fe-4S binding domain CI104_RS17165 PF12838 4Fe-4S dicluster domain CI104_RS17170 PF01568 Molydopterin dinucleotide binding domain CI104_RS17170 PF00384 Molybdopterin oxidoreductase CI104_RS17170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS17175 PF03927 NapD protein CI104_RS17180 PF12800 4Fe-4S binding domain CI104_RS17180 PF13187 4Fe-4S dicluster domain CI104_RS17180 PF00037 4Fe-4S binding domain CI104_RS17185 PF03974 Ecotin CI104_RS17190 PF06039 Malate:quinone oxidoreductase (Mqo) CI104_RS17195 PF00916 Sulfate permease family CI104_RS17195 PF01740 STAS domain CI104_RS17200 PF01769 Divalent cation transporter CI104_RS17200 PF03448 MgtE intracellular N domain CI104_RS17200 PF00571 CBS domain CI104_RS17205 PF00005 ABC transporter CI104_RS17210 PF13532 2OG-Fe(II) oxygenase superfamily CI104_RS17215 PF12833 Helix-turn-helix domain CI104_RS17215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CI104_RS17215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CI104_RS17215 PF02805 Metal binding domain of Ada CI104_RS17220 PF02424 ApbE family CI104_RS17225 PF00267 Gram-negative porin CI104_RS17230 PF01627 Hpt domain CI104_RS17230 PF16359 RcsD-ABL domain CI104_RS17230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS17235 PF00196 Bacterial regulatory proteins, luxR family CI104_RS17235 PF00072 Response regulator receiver domain CI104_RS17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS17240 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS17240 PF09456 RcsC Alpha-Beta-Loop (ABL) CI104_RS17240 PF00072 Response regulator receiver domain CI104_RS17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS17245 PF00989 PAS fold CI104_RS17245 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS17250 PF00158 Sigma-54 interaction domain CI104_RS17250 PF00072 Response regulator receiver domain CI104_RS17250 PF02954 Bacterial regulatory protein, Fis family CI104_RS17255 PF01144 Coenzyme A transferase CI104_RS17260 PF01144 Coenzyme A transferase CI104_RS17265 PF02667 Short chain fatty acid transporter CI104_RS17270 PF00108 Thiolase, N-terminal domain CI104_RS17270 PF02803 Thiolase, C-terminal domain CI104_RS17280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS17280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS17285 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CI104_RS17285 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CI104_RS17290 PF03829 PTS system glucitol/sorbitol-specific IIA component CI104_RS17295 PF03608 PTS system enzyme II sorbitol-specific factor CI104_RS17300 PF00521 DNA gyrase/topoisomerase IV, subunit A CI104_RS17300 PF03989 DNA gyrase C-terminal domain, beta-propeller CI104_RS17310 PF02867 Ribonucleotide reductase, barrel domain CI104_RS17310 PF03477 ATP cone domain CI104_RS17310 PF00317 Ribonucleotide reductase, all-alpha domain CI104_RS17315 PF00268 Ribonucleotide reductase, small chain CI104_RS17320 PF00111 2Fe-2S iron-sulfur cluster binding domain CI104_RS17330 PF03009 Glycerophosphoryl diester phosphodiesterase family CI104_RS17335 PF07690 Major Facilitator Superfamily CI104_RS17340 PF01266 FAD dependent oxidoreductase CI104_RS17340 PF04324 BFD-like [2Fe-2S] binding domain CI104_RS17345 PF00890 FAD binding domain CI104_RS17350 PF02754 Cysteine-rich domain CI104_RS17350 PF13183 4Fe-4S dicluster domain CI104_RS17355 PF04754 Putative transposase, YhgA-like CI104_RS17360 PF03328 HpcH/HpaI aldolase/citrate lyase family CI104_RS17365 PF07690 Major Facilitator Superfamily CI104_RS17370 PF13378 Enolase C-terminal domain-like CI104_RS17370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS17375 PF09339 IclR helix-turn-helix domain CI104_RS17375 PF01614 Bacterial transcriptional regulator CI104_RS17380 PF00994 Probable molybdopterin binding domain CI104_RS17385 PF07437 YfaZ precursor CI104_RS17390 PF00293 NUDIX domain CI104_RS17395 PF00300 Histidine phosphatase superfamily (branch 1) CI104_RS17400 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CI104_RS17405 PF00535 Glycosyl transferase family 2 CI104_RS17410 PF00551 Formyl transferase CI104_RS17410 PF02911 Formyl transferase, C-terminal domain CI104_RS17410 PF01370 NAD dependent epimerase/dehydratase family CI104_RS17415 PF01522 Polysaccharide deacetylase CI104_RS17420 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CI104_RS17425 PF00892 EamA-like transporter family CI104_RS17440 PF13193 AMP-binding enzyme C-terminal domain CI104_RS17440 PF00501 AMP-binding enzyme CI104_RS17445 PF13378 Enolase C-terminal domain-like CI104_RS17450 PF00378 Enoyl-CoA hydratase/isomerase CI104_RS17455 PF12697 Alpha/beta hydrolase family CI104_RS17460 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS17460 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CI104_RS17460 PF16582 Middle domain of thiamine pyrophosphate CI104_RS17465 PF00425 chorismate binding enzyme CI104_RS17470 PF05957 Bacterial protein of unknown function (DUF883) CI104_RS17475 PF13673 Acetyltransferase (GNAT) domain CI104_RS17480 PF12706 Beta-lactamase superfamily domain CI104_RS17485 PF01584 CheW-like domain CI104_RS17485 PF00072 Response regulator receiver domain CI104_RS17490 PF00361 Proton-conducting membrane transporter CI104_RS17495 PF00361 Proton-conducting membrane transporter CI104_RS17500 PF00361 Proton-conducting membrane transporter CI104_RS17500 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CI104_RS17505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CI104_RS17510 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CI104_RS17515 PF12838 4Fe-4S dicluster domain CI104_RS17520 PF00146 NADH dehydrogenase CI104_RS17525 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CI104_RS17525 PF00384 Molybdopterin oxidoreductase CI104_RS17525 PF01568 Molydopterin dinucleotide binding domain CI104_RS17525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS17530 PF10531 SLBB domain CI104_RS17530 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CI104_RS17530 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CI104_RS17540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CI104_RS17540 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CI104_RS17545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CI104_RS17550 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CI104_RS17555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS17555 PF03466 LysR substrate binding domain CI104_RS17560 PF00155 Aminotransferase class I and II CI104_RS17570 PF02080 TrkA-C domain CI104_RS17570 PF03600 Citrate transporter CI104_RS17575 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS17580 PF03887 YfbU domain CI104_RS17585 PF04217 Protein of unknown function, DUF412 CI104_RS17590 PF00871 Acetokinase family CI104_RS17595 PF01515 Phosphate acetyl/butaryl transferase CI104_RS17595 PF07085 DRTGG domain CI104_RS17600 PF03606 C4-dicarboxylate anaerobic carrier CI104_RS17605 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CI104_RS17605 PF02779 Transketolase, pyrimidine binding domain CI104_RS17605 PF02780 Transketolase, C-terminal domain CI104_RS17610 PF00456 Transketolase, thiamine diphosphate binding domain CI104_RS17615 PF03611 PTS system sugar-specific permease component CI104_RS17625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS17630 PF00356 Bacterial regulatory proteins, lacI family CI104_RS17635 PF00293 NUDIX domain CI104_RS17640 PF12850 Calcineurin-like phosphoesterase superfamily domain CI104_RS17645 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS17645 PF14834 Glutathione S-transferase, C-terminal domain CI104_RS17650 PF00043 Glutathione S-transferase, C-terminal domain CI104_RS17650 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS17655 PF02152 Dihydroneopterin aldolase CI104_RS17660 PF01370 NAD dependent epimerase/dehydratase family CI104_RS17660 PF08338 Domain of unknown function (DUF1731) CI104_RS17665 PF13302 Acetyltransferase (GNAT) domain CI104_RS17670 PF00005 ABC transporter CI104_RS17675 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS17680 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS17685 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS17690 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS17700 PF02441 Flavoprotein CI104_RS17705 PF00156 Phosphoribosyl transferase domain CI104_RS17710 PF02674 Colicin V production protein CI104_RS17715 PF05036 Sporulation related domain CI104_RS17720 PF08245 Mur ligase middle domain CI104_RS17720 PF02875 Mur ligase family, glutamate ligase domain CI104_RS17725 PF01039 Carboxyl transferase domain CI104_RS17725 PF17848 Acetyl-coA carboxylase zinc finger domain CI104_RS17730 PF09335 SNARE associated Golgi protein CI104_RS17735 PF01416 tRNA pseudouridine synthase CI104_RS17740 PF02774 Semialdehyde dehydrogenase, dimerisation domain CI104_RS17740 PF01118 Semialdehyde dehydrogenase, NAD binding domain CI104_RS17745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CI104_RS17745 PF11890 Domain of unknown function (DUF3410) CI104_RS17745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CI104_RS17755 PF07690 Major Facilitator Superfamily CI104_RS17780 PF00109 Beta-ketoacyl synthase, N-terminal domain CI104_RS17780 PF02801 Beta-ketoacyl synthase, C-terminal domain CI104_RS17785 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CI104_RS17785 PF01266 FAD dependent oxidoreductase CI104_RS17790 PF08891 YfcL protein CI104_RS17795 PF04315 Elongation factor P hydroxylase CI104_RS17800 PF01925 Sulfite exporter TauE/SafE CI104_RS17805 PF03411 Penicillin-insensitive murein endopeptidase CI104_RS17810 PF01264 Chorismate synthase CI104_RS17815 PF05175 Methyltransferase small domain CI104_RS17820 PF01713 Smr domain CI104_RS17825 PF00300 Histidine phosphatase superfamily (branch 1) CI104_RS17830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CI104_RS17830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CI104_RS17830 PF00378 Enoyl-CoA hydratase/isomerase CI104_RS17835 PF00108 Thiolase, N-terminal domain CI104_RS17835 PF02803 Thiolase, C-terminal domain CI104_RS17840 PF04175 Protein of unknown function (DUF406) CI104_RS17845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CI104_RS17850 PF04333 MlaA lipoprotein CI104_RS17855 PF01226 Formate/nitrite transporter CI104_RS17880 PF01738 Dienelactone hydrolase family CI104_RS17885 PF04191 Phospholipid methyltransferase CI104_RS17890 PF07411 Domain of unknown function (DUF1508) CI104_RS17895 PF00005 ABC transporter CI104_RS17900 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS17905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS17910 PF03466 LysR substrate binding domain CI104_RS17915 PF00484 Carbonic anhydrase CI104_RS17920 PF02560 Cyanate lyase C-terminal domain CI104_RS17925 PF14437 MafB19-like deaminase CI104_RS17930 PF07690 Major Facilitator Superfamily CI104_RS17935 PF10810 Protein of unknown function (DUF2545) CI104_RS17940 PF03279 Bacterial lipid A biosynthesis acyltransferase CI104_RS17945 PF00155 Aminotransferase class I and II CI104_RS17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS17950 PF07694 5TMR of 5TMR-LYT CI104_RS17950 PF06580 Histidine kinase CI104_RS17955 PF00072 Response regulator receiver domain CI104_RS17955 PF04397 LytTr DNA-binding domain CI104_RS17965 PF00849 RNA pseudouridylate synthase CI104_RS17970 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CI104_RS17975 PF02685 Glucokinase CI104_RS17985 PF00654 Voltage gated chloride channel CI104_RS17990 PF00205 Thiamine pyrophosphate enzyme, central domain CI104_RS17990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CI104_RS17990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS17995 PF00248 Aldo/keto reductase family CI104_RS18000 PF10697 Protein of unknown function (DUF2502) CI104_RS18005 PF01566 Natural resistance-associated macrophage protein CI104_RS18010 PF07662 Na+ dependent nucleoside transporter C-terminus CI104_RS18010 PF01773 Na+ dependent nucleoside transporter N-terminus CI104_RS18010 PF07670 Nucleoside recognition CI104_RS18015 PF05231 MASE1 CI104_RS18015 PF00563 EAL domain CI104_RS18030 PF07037 Putative transcription regulator (DUF1323) CI104_RS18035 PF07037 Putative transcription regulator (DUF1323) CI104_RS18040 PF00749 tRNA synthetases class I (E and Q), catalytic domain CI104_RS18070 PF03466 LysR substrate binding domain CI104_RS18070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS18075 PF03825 Nucleoside H+ symporter CI104_RS18080 PF01048 Phosphorylase superfamily CI104_RS18090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS18090 PF03466 LysR substrate binding domain CI104_RS18095 PF13593 SBF-like CPA transporter family (DUF4137) CI104_RS18100 PF12843 Putative quorum-sensing-regulated virulence factor CI104_RS18105 PF12826 Helix-hairpin-helix motif CI104_RS18105 PF00533 BRCA1 C Terminus (BRCT) domain CI104_RS18105 PF01653 NAD-dependent DNA ligase adenylation domain CI104_RS18105 PF03120 NAD-dependent DNA ligase OB-fold domain CI104_RS18105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CI104_RS18110 PF04354 ZipA, C-terminal FtsZ-binding domain CI104_RS18120 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS18130 PF00381 PTS HPr component phosphorylation site CI104_RS18135 PF00391 PEP-utilising enzyme, mobile domain CI104_RS18135 PF05524 PEP-utilising enzyme, N-terminal CI104_RS18135 PF02896 PEP-utilising enzyme, TIM barrel domain CI104_RS18140 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CI104_RS18150 PF08543 Phosphomethylpyrimidine kinase CI104_RS18155 PF00155 Aminotransferase class I and II CI104_RS18155 PF00392 Bacterial regulatory proteins, gntR family CI104_RS18160 PF00117 Glutamine amidotransferase class-I CI104_RS18165 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS18170 PF00005 ABC transporter CI104_RS18175 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS18180 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS18195 PF04261 Dyp-type peroxidase family CI104_RS18200 PF06572 Protein of unknown function (DUF1131) CI104_RS18205 PF11143 Protein of unknown function (DUF2919) CI104_RS18210 PF00583 Acetyltransferase (GNAT) family CI104_RS18215 PF01520 N-acetylmuramoyl-L-alanine amidase CI104_RS18220 PF01218 Coproporphyrinogen III oxidase CI104_RS18225 PF12833 Helix-turn-helix domain CI104_RS18230 PF16365 Ethanolamine utilization protein EutK C-terminus CI104_RS18230 PF00936 BMC domain CI104_RS18235 PF00936 BMC domain CI104_RS18240 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CI104_RS18245 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CI104_RS18250 PF06277 Ethanolamine utilisation protein EutA CI104_RS18255 PF04346 Ethanolamine utilisation protein, EutH CI104_RS18260 PF00465 Iron-containing alcohol dehydrogenase CI104_RS18270 PF00171 Aldehyde dehydrogenase family CI104_RS18275 PF03319 Ethanolamine utilisation protein EutN/carboxysome CI104_RS18280 PF00936 BMC domain CI104_RS18285 PF01515 Phosphate acetyl/butaryl transferase CI104_RS18290 PF01923 Cobalamin adenosyltransferase CI104_RS18295 PF06249 Ethanolamine utilisation protein EutQ CI104_RS18300 PF10662 Ethanolamine utilisation - propanediol utilisation CI104_RS18305 PF00936 BMC domain CI104_RS18315 PF00390 Malic enzyme, N-terminal domain CI104_RS18315 PF01515 Phosphate acetyl/butaryl transferase CI104_RS18315 PF03949 Malic enzyme, NAD binding domain CI104_RS18325 PF00923 Transaldolase/Fructose-6-phosphate aldolase CI104_RS18330 PF02780 Transketolase, C-terminal domain CI104_RS18330 PF02779 Transketolase, pyrimidine binding domain CI104_RS18330 PF00456 Transketolase, thiamine diphosphate binding domain CI104_RS18335 PF06674 Protein of unknown function (DUF1176) CI104_RS18340 PF00293 NUDIX domain CI104_RS18345 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS18345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CI104_RS18345 PF13247 4Fe-4S dicluster domain CI104_RS18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS18350 PF00672 HAMP domain CI104_RS18350 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CI104_RS18350 PF07730 Histidine kinase CI104_RS18355 PF00873 AcrB/AcrD/AcrF family CI104_RS18360 PF03960 ArsC family CI104_RS18365 PF07687 Peptidase dimerisation domain CI104_RS18365 PF01546 Peptidase family M20/M25/M40 CI104_RS18370 PF13980 Uncharacterised protein family (UPF0370) CI104_RS18375 PF02230 Phospholipase/Carboxylesterase CI104_RS18380 PF08351 Domain of unknown function (DUF1726) CI104_RS18380 PF17176 tRNA-binding domain CI104_RS18380 PF05127 Helicase CI104_RS18380 PF13718 GNAT acetyltransferase 2 CI104_RS18385 PF04228 Putative neutral zinc metallopeptidase CI104_RS18390 PF01259 SAICAR synthetase CI104_RS18395 PF06804 NlpB/DapX lipoprotein CI104_RS18400 PF00701 Dihydrodipicolinate synthetase family CI104_RS18405 PF01842 ACT domain CI104_RS18410 PF00578 AhpC/TSA family CI104_RS18415 PF01594 AI-2E family transporter CI104_RS18420 PF01435 Peptidase family M48 CI104_RS18425 PF03960 ArsC family CI104_RS18435 PF02378 Phosphotransferase system, EIIC CI104_RS18440 PF01112 Asparaginase CI104_RS18445 PF00883 Cytosol aminopeptidase family, catalytic domain CI104_RS18445 PF02789 Cytosol aminopeptidase family, N-terminal domain CI104_RS18450 PF00308 Bacterial dnaA protein CI104_RS18455 PF00860 Permease family CI104_RS18465 PF00232 Glycosyl hydrolase family 1 CI104_RS18470 PF02769 AIR synthase related protein, C-terminal domain CI104_RS18470 PF00586 AIR synthase related protein, N-terminal domain CI104_RS18475 PF00551 Formyl transferase CI104_RS18480 PF17941 Polyphosphate kinase C-terminal domain 1 CI104_RS18480 PF13089 Polyphosphate kinase N-terminal domain CI104_RS18480 PF02503 Polyphosphate kinase middle domain CI104_RS18480 PF13090 Polyphosphate kinase C-terminal domain 2 CI104_RS18485 PF02541 Ppx/GppA phosphatase family CI104_RS18490 PF00563 EAL domain CI104_RS18490 PF05231 MASE1 CI104_RS18495 PF11119 Protein of unknown function (DUF2633) CI104_RS18500 PF02540 NAD synthase CI104_RS18500 PF00958 GMP synthase C terminal domain CI104_RS18500 PF00117 Glutamine amidotransferase class-I CI104_RS18505 PF00571 CBS domain CI104_RS18505 PF00478 IMP dehydrogenase / GMP reductase domain CI104_RS18510 PF02601 Exonuclease VII, large subunit CI104_RS18510 PF13742 OB-fold nucleic acid binding domain CI104_RS18515 PF07191 zinc-ribbons CI104_RS18525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CI104_RS18525 PF01926 50S ribosome-binding GTPase CI104_RS18530 PF13360 PQQ-like domain CI104_RS18535 PF09976 Tetratricopeptide repeat-like domain CI104_RS18540 PF13393 Histidyl-tRNA synthetase CI104_RS18540 PF03129 Anticodon binding domain CI104_RS18545 PF04551 GcpE protein CI104_RS18550 PF13464 Domain of unknown function (DUF4115) CI104_RS18555 PF04055 Radical SAM superfamily CI104_RS18560 PF00334 Nucleoside diphosphate kinase CI104_RS18565 PF00912 Transglycosylase CI104_RS18565 PF06832 Penicillin-Binding Protein C-terminus Family CI104_RS18565 PF00905 Penicillin binding protein transpeptidase domain CI104_RS18570 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CI104_RS18570 PF01835 MG2 domain CI104_RS18570 PF17962 Bacterial macroglobulin domain 6 CI104_RS18570 PF00207 Alpha-2-macroglobulin family CI104_RS18570 PF07703 Alpha-2-macroglobulin bait region domain CI104_RS18570 PF07678 A-macroglobulin TED domain CI104_RS18570 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CI104_RS18570 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CI104_RS18570 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CI104_RS18575 PF00581 Rhodanese-like domain CI104_RS18580 PF14581 SseB protein C-terminal domain CI104_RS18580 PF07179 SseB protein N-terminal domain CI104_RS18585 PF00883 Cytosol aminopeptidase family, catalytic domain CI104_RS18585 PF12404 Peptidase CI104_RS18590 PF04384 Iron-sulphur cluster assembly CI104_RS18595 PF00111 2Fe-2S iron-sulfur cluster binding domain CI104_RS18600 PF00012 Hsp70 protein CI104_RS18605 PF07743 HSCB C-terminal oligomerisation domain CI104_RS18610 PF01521 Iron-sulphur cluster biosynthesis CI104_RS18615 PF01592 NifU-like N terminal domain CI104_RS18620 PF00266 Aminotransferase class-V CI104_RS18625 PF02082 Transcriptional regulator CI104_RS18630 PF00588 SpoU rRNA Methylase family CI104_RS18635 PF00459 Inositol monophosphatase family CI104_RS18640 PF03824 High-affinity nickel-transport protein CI104_RS18645 PF06226 Protein of unknown function (DUF1007) CI104_RS18655 PF00005 ABC transporter CI104_RS18660 PF02653 Branched-chain amino acid transport system / permease component CI104_RS18665 PF02653 Branched-chain amino acid transport system / permease component CI104_RS18670 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS18670 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS18675 PF00571 CBS domain CI104_RS18675 PF01380 SIS domain CI104_RS18680 PF00874 PRD domain CI104_RS18685 PF12832 MFS_1 like family CI104_RS18695 PF00083 Sugar (and other) transporter CI104_RS18700 PF13181 Tetratricopeptide repeat CI104_RS18700 PF17128 Domain of unknown function (DUF5107) CI104_RS18705 PF00480 ROK family CI104_RS18710 PF07681 DoxX CI104_RS18715 PF00464 Serine hydroxymethyltransferase CI104_RS18725 PF00970 Oxidoreductase FAD-binding domain CI104_RS18725 PF00042 Globin CI104_RS18725 PF00175 Oxidoreductase NAD-binding domain CI104_RS18730 PF00543 Nitrogen regulatory protein P-II CI104_RS18735 PF00158 Sigma-54 interaction domain CI104_RS18735 PF00072 Response regulator receiver domain CI104_RS18740 PF13942 YfhG lipoprotein CI104_RS18745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS18745 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS18750 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CI104_RS18750 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CI104_RS18750 PF02769 AIR synthase related protein, C-terminal domain CI104_RS18760 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS18760 PF01464 Transglycosylase SLT domain CI104_RS18765 PF14437 MafB19-like deaminase CI104_RS18775 PF02378 Phosphotransferase system, EIIC CI104_RS18775 PF00367 phosphotransferase system, EIIB CI104_RS18780 PF01380 SIS domain CI104_RS18785 PF01418 Helix-turn-helix domain, rpiR family CI104_RS18785 PF01380 SIS domain CI104_RS18790 PF12838 4Fe-4S dicluster domain CI104_RS18795 PF01648 4'-phosphopantetheinyl transferase superfamily CI104_RS18800 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CI104_RS18805 PF11967 Recombination protein O N terminal CI104_RS18805 PF02565 Recombination protein O C terminal CI104_RS18810 PF01926 50S ribosome-binding GTPase CI104_RS18810 PF07650 KH domain CI104_RS18815 PF00035 Double-stranded RNA binding motif CI104_RS18815 PF14622 Ribonuclease-III-like CI104_RS18825 PF10502 Signal peptidase, peptidase S26 CI104_RS18830 PF06421 GTP-binding protein LepA C-terminus CI104_RS18830 PF00009 Elongation factor Tu GTP binding domain CI104_RS18830 PF03144 Elongation factor Tu domain 2 CI104_RS18830 PF00679 Elongation factor G C-terminus CI104_RS18840 PF03888 MucB/RseB N-terminal domain CI104_RS18840 PF17188 MucB/RseB C-terminal domain CI104_RS18845 PF03872 Anti sigma-E protein RseA, N-terminal domain CI104_RS18845 PF03873 Anti sigma-E protein RseA, C-terminal domain CI104_RS18850 PF04542 Sigma-70 region 2 CI104_RS18850 PF08281 Sigma-70, region 4 CI104_RS18855 PF02910 Fumarate reductase flavoprotein C-term CI104_RS18855 PF00890 FAD binding domain CI104_RS18860 PF05175 Methyltransferase small domain CI104_RS18865 PF00271 Helicase conserved C-terminal domain CI104_RS18865 PF00270 DEAD/DEAH box helicase CI104_RS18870 PF01228 Glycine radical CI104_RS18875 PF03167 Uracil DNA glycosylase superfamily CI104_RS18880 PF08032 RNA 2'-O ribose methyltransferase substrate binding CI104_RS18880 PF00588 SpoU rRNA Methylase family CI104_RS18890 PF00085 Thioredoxin CI104_RS18895 PF03942 DTW domain CI104_RS18900 PF13607 Succinyl-CoA ligase like flavodoxin domain CI104_RS18900 PF13380 CoA binding domain CI104_RS18900 PF00583 Acetyltransferase (GNAT) family CI104_RS18905 PF13091 PLD-like domain CI104_RS18910 PF10043 Predicted periplasmic lipoprotein (DUF2279) CI104_RS18915 PF00083 Sugar (and other) transporter CI104_RS18940 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS18940 PF07724 AAA domain (Cdc48 subfamily) CI104_RS18940 PF02861 Clp amino terminal domain, pathogenicity island component CI104_RS18940 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS18940 PF17871 AAA lid domain CI104_RS18945 PF02578 Multi-copper polyphenol oxidoreductase laccase CI104_RS18950 PF01479 S4 domain CI104_RS18950 PF00849 RNA pseudouridylate synthase CI104_RS18960 PF13525 Outer membrane lipoprotein CI104_RS18965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CI104_RS18970 PF00800 Prephenate dehydratase CI104_RS18970 PF01817 Chorismate mutase type II CI104_RS18975 PF02153 Prephenate dehydrogenase CI104_RS18975 PF01817 Chorismate mutase type II CI104_RS18980 PF00793 DAHP synthetase I family CI104_RS18985 PF10973 Protein of unknown function (DUF2799) CI104_RS18990 PF13689 YfiR/HmsC-like CI104_RS18995 PF17152 Periplasmic sensor domain CI104_RS18995 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS19000 PF00691 OmpA family CI104_RS19015 PF01245 Ribosomal protein L19 CI104_RS19020 PF01746 tRNA (Guanine-1)-methyltransferase CI104_RS19025 PF01782 RimM N-terminal domain CI104_RS19025 PF05239 PRC-barrel domain CI104_RS19030 PF00886 Ribosomal protein S16 CI104_RS19035 PF02978 Signal peptide binding domain CI104_RS19035 PF00448 SRP54-type protein, GTPase domain CI104_RS19035 PF02881 SRP54-type protein, helical bundle domain CI104_RS19040 PF01578 Cytochrome C assembly protein CI104_RS19045 PF01595 Cyclin M transmembrane N-terminal domain CI104_RS19045 PF03471 Transporter associated domain CI104_RS19045 PF00571 CBS domain CI104_RS19050 PF01025 GrpE CI104_RS19060 PF01513 ATP-NAD kinase CI104_RS19065 PF02463 RecF/RecN/SMC N terminal domain CI104_RS19070 PF04355 SmpA / OmlA family CI104_RS19075 PF03658 RnfH family Ubiquitin CI104_RS19080 PF03364 Polyketide cyclase / dehydrase and lipid transport CI104_RS19085 PF01668 SmpB protein CI104_RS19115 PF00589 Phage integrase family CI104_RS19115 PF13495 Phage integrase, N-terminal SAM-like domain CI104_RS19125 PF05139 Erythromycin esterase CI104_RS19135 PF02522 Aminoglycoside 3-N-acetyltransferase CI104_RS19150 PF05139 Erythromycin esterase CI104_RS19155 PF00893 Small Multidrug Resistance protein CI104_RS19160 PF00809 Pterin binding enzyme CI104_RS19180 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS19190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CI104_RS19190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS19200 PF00455 DeoR C terminal sensor domain CI104_RS19200 PF08220 DeoR-like helix-turn-helix domain CI104_RS19235 PF00664 ABC transporter transmembrane region CI104_RS19235 PF00005 ABC transporter CI104_RS19240 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS19240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS19250 PF00589 Phage integrase family CI104_RS19250 PF13356 Arm DNA-binding domain CI104_RS19275 PF13148 Protein of unknown function (DUF3987) CI104_RS19320 PF01926 50S ribosome-binding GTPase CI104_RS19325 PF13280 WYL domain CI104_RS19325 PF08220 DeoR-like helix-turn-helix domain CI104_RS19335 PF06006 Bacterial protein of unknown function (DUF905) CI104_RS19340 PF06067 Domain of unknown function (DUF932) CI104_RS19345 PF03230 Antirestriction protein CI104_RS19350 PF04002 RadC-like JAB domain CI104_RS19355 PF06174 Protein of unknown function (DUF987) CI104_RS19360 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CI104_RS19365 PF06755 CbtA_toxin of type IV toxin-antitoxin system CI104_RS19370 PF00939 Sodium:sulfate symporter transmembrane region CI104_RS19375 PF06434 Aconitate hydratase 2 N-terminus CI104_RS19375 PF00330 Aconitase family (aconitate hydratase) CI104_RS19375 PF11791 Aconitate B N-terminal domain CI104_RS19385 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CI104_RS19390 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CI104_RS19395 PF04223 Citrate lyase, alpha subunit (CitF) CI104_RS19400 PF03328 HpcH/HpaI aldolase/citrate lyase family CI104_RS19405 PF06857 Malonate decarboxylase delta subunit (MdcD) CI104_RS19410 PF08218 Citrate lyase ligase C-terminal domain CI104_RS19410 PF00583 Acetyltransferase (GNAT) family CI104_RS19415 PF01557 Fumarylacetoacetate (FAA) hydrolase family CI104_RS19420 PF07690 Major Facilitator Superfamily CI104_RS19425 PF04303 PrpF protein CI104_RS19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS19430 PF03466 LysR substrate binding domain CI104_RS19455 PF08676 MutL C terminal dimerisation domain CI104_RS19455 PF01119 DNA mismatch repair protein, C-terminal domain CI104_RS19460 PF00140 Sigma-70 factor, region 1.2 CI104_RS19460 PF04545 Sigma-70, region 4 CI104_RS19460 PF04539 Sigma-70 region 3 CI104_RS19460 PF04542 Sigma-70 region 2 CI104_RS19460 PF04546 Sigma-70, non-essential region CI104_RS19460 PF03979 Sigma-70 factor, region 1.1 CI104_RS19465 PF00563 EAL domain CI104_RS19465 PF12792 CSS motif domain associated with EAL CI104_RS19485 PF08943 CsiD CI104_RS19490 PF01266 FAD dependent oxidoreductase CI104_RS19495 PF00171 Aldehyde dehydrogenase family CI104_RS19500 PF00202 Aminotransferase class-III CI104_RS19505 PF00324 Amino acid permease CI104_RS19510 PF00392 Bacterial regulatory proteins, gntR family CI104_RS19510 PF07729 FCD domain CI104_RS19515 PF04972 BON domain CI104_RS19515 PF01476 LysM domain CI104_RS19520 PF01679 Proteolipid membrane potential modulator CI104_RS19525 PF01022 Bacterial regulatory protein, arsR family CI104_RS19530 PF00581 Rhodanese-like domain CI104_RS19530 PF11127 Protein of unknown function (DUF2892) CI104_RS19535 PF00816 H-NS histone family CI104_RS19540 PF06610 L-alanine exporter CI104_RS19545 PF09400 Protein of unknown function (DUF2002) CI104_RS19550 PF05957 Bacterial protein of unknown function (DUF883) CI104_RS19555 PF00155 Aminotransferase class I and II CI104_RS19555 PF00392 Bacterial regulatory proteins, gntR family CI104_RS19560 PF02627 Carboxymuconolactone decarboxylase family CI104_RS19565 PF00462 Glutaredoxin CI104_RS19570 PF07972 NrdI Flavodoxin like CI104_RS19575 PF00317 Ribonucleotide reductase, all-alpha domain CI104_RS19575 PF02867 Ribonucleotide reductase, barrel domain CI104_RS19575 PF08343 Ribonucleotide reductase N-terminal CI104_RS19580 PF00268 Ribonucleotide reductase, small chain CI104_RS19590 PF00571 CBS domain CI104_RS19590 PF00005 ABC transporter CI104_RS19595 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS19600 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CI104_RS19605 PF07690 Major Facilitator Superfamily CI104_RS19610 PF03591 AzlC protein CI104_RS19615 PF05437 Branched-chain amino acid transport protein (AzlD) CI104_RS19620 PF01047 MarR family CI104_RS19625 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS19625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS19630 PF07690 Major Facilitator Superfamily CI104_RS19635 PF02664 S-Ribosylhomocysteinase (LuxS) CI104_RS19640 PF04262 Glutamate-cysteine ligase CI104_RS19645 PF09335 SNARE associated Golgi protein CI104_RS19650 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS19685 PF02599 Global regulator protein family CI104_RS19690 PF02272 DHHA1 domain CI104_RS19690 PF01411 tRNA synthetases class II (A) CI104_RS19690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CI104_RS19695 PF02631 RecX family CI104_RS19700 PF00154 recA bacterial DNA recombination protein CI104_RS19705 PF02464 Competence-damaged protein CI104_RS19710 PF13406 Transglycosylase SLT domain CI104_RS19715 PF03608 PTS system enzyme II sorbitol-specific factor CI104_RS19720 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CI104_RS19720 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CI104_RS19725 PF03829 PTS system glucitol/sorbitol-specific IIA component CI104_RS19730 PF00106 short chain dehydrogenase CI104_RS19735 PF06923 Glucitol operon activator protein (GutM) CI104_RS19740 PF08220 DeoR-like helix-turn-helix domain CI104_RS19740 PF00455 DeoR C terminal sensor domain CI104_RS19745 PF01380 SIS domain CI104_RS19745 PF00571 CBS domain CI104_RS19750 PF01590 GAF domain CI104_RS19750 PF00158 Sigma-54 interaction domain CI104_RS19755 PF00301 Rubredoxin CI104_RS19755 PF00258 Flavodoxin CI104_RS19755 PF00753 Metallo-beta-lactamase superfamily CI104_RS19760 PF18113 Rubredoxin binding C-terminal domain CI104_RS19760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS19765 PF00708 Acylphosphatase CI104_RS19765 PF17788 HypF Kae1-like domain CI104_RS19765 PF01300 Telomere recombination CI104_RS19765 PF07503 HypF finger CI104_RS19770 PF12800 4Fe-4S binding domain CI104_RS19770 PF13247 4Fe-4S dicluster domain CI104_RS19775 PF00356 Bacterial regulatory proteins, lacI family CI104_RS19780 PF02378 Phosphotransferase system, EIIC CI104_RS19780 PF00367 phosphotransferase system, EIIB CI104_RS19785 PF00232 Glycosyl hydrolase family 1 CI104_RS19790 PF08845 Toxin SymE, type I toxin-antitoxin system CI104_RS19795 PF01750 Hydrogenase maturation protease CI104_RS19800 PF07450 Formate hydrogenlyase maturation protein HycH CI104_RS19805 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CI104_RS19810 PF12838 4Fe-4S dicluster domain CI104_RS19815 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CI104_RS19815 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CI104_RS19815 PF00374 Nickel-dependent hydrogenase CI104_RS19820 PF00146 NADH dehydrogenase CI104_RS19825 PF00361 Proton-conducting membrane transporter CI104_RS19830 PF13247 4Fe-4S dicluster domain CI104_RS19835 PF11046 Transcriptional repressor of hyc and hyp operons CI104_RS19840 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CI104_RS19845 PF02492 CobW/HypB/UreG, nucleotide-binding domain CI104_RS19850 PF01455 HupF/HypC family CI104_RS19855 PF01924 Hydrogenase formation hypA family CI104_RS19860 PF00586 AIR synthase related protein, N-terminal domain CI104_RS19860 PF02769 AIR synthase related protein, C-terminal domain CI104_RS19865 PF02954 Bacterial regulatory protein, Fis family CI104_RS19865 PF01590 GAF domain CI104_RS19865 PF00158 Sigma-54 interaction domain CI104_RS19870 PF11756 Nitrous oxide-stimulated promoter CI104_RS19875 PF01297 Zinc-uptake complex component A periplasmic CI104_RS19880 PF00005 ABC transporter CI104_RS19885 PF00950 ABC 3 transport family CI104_RS19890 PF00950 ABC 3 transport family CI104_RS19895 PF00488 MutS domain V CI104_RS19895 PF01624 MutS domain I CI104_RS19895 PF05188 MutS domain II CI104_RS19895 PF05190 MutS family domain IV CI104_RS19895 PF05192 MutS domain III CI104_RS19905 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CI104_RS19910 PF02441 Flavoprotein CI104_RS19915 PF01047 MarR family CI104_RS19920 PF04545 Sigma-70, region 4 CI104_RS19920 PF04539 Sigma-70 region 3 CI104_RS19920 PF00140 Sigma-70 factor, region 1.2 CI104_RS19920 PF04542 Sigma-70 region 2 CI104_RS19925 PF01476 LysM domain CI104_RS19925 PF01551 Peptidase family M23 CI104_RS19935 PF01975 Survival protein SurE CI104_RS19940 PF01142 tRNA pseudouridine synthase D (TruD) CI104_RS19945 PF02542 YgbB family CI104_RS19950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CI104_RS19955 PF04977 Septum formation initiator CI104_RS19960 PF12084 Protein of unknown function (DUF3561) CI104_RS19970 PF00009 Elongation factor Tu GTP binding domain CI104_RS19975 PF01507 Phosphoadenosine phosphosulfate reductase family CI104_RS19980 PF04389 Peptidase family M28 CI104_RS19990 PF01507 Phosphoadenosine phosphosulfate reductase family CI104_RS19995 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CI104_RS19995 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CI104_RS20000 PF00258 Flavodoxin CI104_RS20000 PF00667 FAD binding domain CI104_RS20000 PF00175 Oxidoreductase NAD-binding domain CI104_RS20010 PF01242 6-pyruvoyl tetrahydropterin synthase CI104_RS20015 PF04055 Radical SAM superfamily CI104_RS20020 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CI104_RS20025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CI104_RS20025 PF02378 Phosphotransferase system, EIIC CI104_RS20025 PF00367 phosphotransferase system, EIIB CI104_RS20030 PF01380 SIS domain CI104_RS20030 PF01418 Helix-turn-helix domain, rpiR family CI104_RS20035 PF00113 Enolase, C-terminal TIM barrel domain CI104_RS20035 PF03952 Enolase, N-terminal domain CI104_RS20040 PF06418 CTP synthase N-terminus CI104_RS20040 PF00117 Glutamine amidotransferase class-I CI104_RS20045 PF03819 MazG nucleotide pyrophosphohydrolase domain CI104_RS20050 PF02824 TGS domain CI104_RS20050 PF04607 Region found in RelA / SpoT proteins CI104_RS20050 PF13291 ACT domain CI104_RS20055 PF01938 TRAM domain CI104_RS20055 PF05958 tRNA (Uracil-5-)-methyltransferase CI104_RS20060 PF00672 HAMP domain CI104_RS20060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS20060 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS20060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CI104_RS20060 PF01627 Hpt domain CI104_RS20060 PF00072 Response regulator receiver domain CI104_RS20065 PF02595 Glycerate kinase family CI104_RS20070 PF13378 Enolase C-terminal domain-like CI104_RS20075 PF13378 Enolase C-terminal domain-like CI104_RS20075 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS20080 PF07690 Major Facilitator Superfamily CI104_RS20090 PF00258 Flavodoxin CI104_RS20095 PF00849 RNA pseudouridylate synthase CI104_RS20100 PF04287 tRNA pseudouridine synthase C CI104_RS20105 PF07348 Syd protein (SUKH-2) CI104_RS20110 PF14489 QueF-like protein CI104_RS20110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CI104_RS20115 PF11892 Domain of unknown function (DUF3412) CI104_RS20115 PF03641 Possible lysine decarboxylase CI104_RS20115 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CI104_RS20125 PF03315 Serine dehydratase beta chain CI104_RS20125 PF03313 Serine dehydratase alpha chain CI104_RS20130 PF01367 5'-3' exonuclease, C-terminal SAM fold CI104_RS20130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CI104_RS20135 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS20140 PF00356 Bacterial regulatory proteins, lacI family CI104_RS20150 PF02653 Branched-chain amino acid transport system / permease component CI104_RS20155 PF00005 ABC transporter CI104_RS20160 PF07881 L-fucose isomerase, first N-terminal domain CI104_RS20160 PF07882 L-fucose isomerase, second N-terminal domain CI104_RS20160 PF02952 L-fucose isomerase, C-terminal domain CI104_RS20165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS20165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS20170 PF05025 RbsD / FucU transport protein family CI104_RS20175 PF00455 DeoR C terminal sensor domain CI104_RS20175 PF08220 DeoR-like helix-turn-helix domain CI104_RS20215 PF00892 EamA-like transporter family CI104_RS20230 PF00072 Response regulator receiver domain CI104_RS20230 PF00486 Transcriptional regulatory protein, C terminal CI104_RS20235 PF13978 Protein of unknown function (DUF4223) CI104_RS20240 PF18125 RlmM ferredoxin-like domain CI104_RS20240 PF01728 FtsJ-like methyltransferase CI104_RS20245 PF04241 Protein of unknown function (DUF423) CI104_RS20250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS20250 PF03466 LysR substrate binding domain CI104_RS20255 PF06004 Bacterial protein of unknown function (DUF903) CI104_RS20260 PF00266 Aminotransferase class-V CI104_RS20265 PF02657 Fe-S metabolism associated domain CI104_RS20270 PF00899 ThiF family CI104_RS20275 PF06725 3D domain CI104_RS20275 PF03562 MltA specific insert domain CI104_RS20295 PF11741 AMIN domain CI104_RS20295 PF01520 N-acetylmuramoyl-L-alanine amidase CI104_RS20305 PF00583 Acetyltransferase (GNAT) family CI104_RS20305 PF00696 Amino acid kinase family CI104_RS20310 PF13538 UvrD-like helicase C-terminal domain CI104_RS20315 PF00580 UvrD/REP helicase N-terminal domain CI104_RS20315 PF12705 PD-(D/E)XK nuclease superfamily CI104_RS20315 PF13361 UvrD-like helicase C-terminal domain CI104_RS20320 PF00675 Insulinase (Peptidase family M16) CI104_RS20320 PF05193 Peptidase M16 inactive domain CI104_RS20320 PF16187 Middle or third domain of peptidase_M16 CI104_RS20325 PF17946 RecC C-terminal domain CI104_RS20330 PF12528 Type II secretion prepilin peptidase dependent protein C CI104_RS20330 PF07963 Prokaryotic N-terminal methylation motif CI104_RS20335 PF10713 Protein of unknown function (DUF2509) CI104_RS20340 PF07963 Prokaryotic N-terminal methylation motif CI104_RS20345 PF07963 Prokaryotic N-terminal methylation motif CI104_RS20350 PF00303 Thymidylate synthase CI104_RS20355 PF01790 Prolipoprotein diacylglyceryl transferase CI104_RS20360 PF02896 PEP-utilising enzyme, TIM barrel domain CI104_RS20360 PF01590 GAF domain CI104_RS20360 PF00391 PEP-utilising enzyme, mobile domain CI104_RS20360 PF05524 PEP-utilising enzyme, N-terminal CI104_RS20365 PF00293 NUDIX domain CI104_RS20375 PF02976 DNA mismatch repair enzyme MutH CI104_RS20380 PF03741 Integral membrane protein TerC family CI104_RS20385 PF06004 Bacterial protein of unknown function (DUF903) CI104_RS20390 PF00248 Aldo/keto reductase family CI104_RS20395 PF07690 Major Facilitator Superfamily CI104_RS20400 PF01553 Acyltransferase CI104_RS20400 PF00501 AMP-binding enzyme CI104_RS20415 PF00356 Bacterial regulatory proteins, lacI family CI104_RS20420 PF00356 Bacterial regulatory proteins, lacI family CI104_RS20425 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CI104_RS20425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CI104_RS20430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS20430 PF03466 LysR substrate binding domain CI104_RS20435 PF01177 Asp/Glu/Hydantoin racemase CI104_RS20450 PF04962 KduI/IolB family CI104_RS20455 PF02803 Thiolase, C-terminal domain CI104_RS20455 PF00108 Thiolase, N-terminal domain CI104_RS20460 PF03466 LysR substrate binding domain CI104_RS20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS20470 PF03222 Tryptophan/tyrosine permease family CI104_RS20485 PF00196 Bacterial regulatory proteins, luxR family CI104_RS20495 PF02583 Metal-sensitive transcriptional repressor CI104_RS20500 PF03824 High-affinity nickel-transport protein CI104_RS20505 PF00419 Fimbrial protein CI104_RS20510 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS20510 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS20515 PF13953 PapC C-terminal domain CI104_RS20515 PF00577 Outer membrane usher protein CI104_RS20515 PF13954 PapC N-terminal domain CI104_RS20525 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS20525 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS20530 PF07969 Amidohydrolase family CI104_RS20535 PF00696 Amino acid kinase family CI104_RS20540 PF06545 Protein of unknown function (DUF1116) CI104_RS20545 PF00549 CoA-ligase CI104_RS20545 PF02629 CoA binding domain CI104_RS20550 PF11392 Protein of unknown function (DUF2877) CI104_RS20555 PF12796 Ankyrin repeats (3 copies) CI104_RS20565 PF06496 Protein of unknown function (DUF1097) CI104_RS20575 PF14542 GCN5-related N-acetyl-transferase CI104_RS20580 PF06902 Divergent 4Fe-4S mono-cluster CI104_RS20585 PF00486 Transcriptional regulatory protein, C terminal CI104_RS20610 PF03641 Possible lysine decarboxylase CI104_RS20615 PF00589 Phage integrase family CI104_RS20620 PF00589 Phage integrase family CI104_RS20625 PF00419 Fimbrial protein CI104_RS20630 PF00419 Fimbrial protein CI104_RS20635 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS20635 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS20640 PF00577 Outer membrane usher protein CI104_RS20640 PF13953 PapC C-terminal domain CI104_RS20640 PF13954 PapC N-terminal domain CI104_RS20645 PF00419 Fimbrial protein CI104_RS20655 PF00419 Fimbrial protein CI104_RS20655 PF09160 FimH, mannose binding CI104_RS20665 PF03472 Autoinducer binding domain CI104_RS20665 PF00196 Bacterial regulatory proteins, luxR family CI104_RS20670 PF00765 Autoinducer synthase CI104_RS20675 PF03992 Antibiotic biosynthesis monooxygenase CI104_RS20680 PF03466 LysR substrate binding domain CI104_RS20680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS20685 PF00206 Lyase CI104_RS20685 PF10415 Fumarase C C-terminus CI104_RS20690 PF03605 Anaerobic c4-dicarboxylate membrane transporter CI104_RS20700 PF13953 PapC C-terminal domain CI104_RS20700 PF13954 PapC N-terminal domain CI104_RS20700 PF00577 Outer membrane usher protein CI104_RS20705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS20705 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS20720 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS20720 PF01627 Hpt domain CI104_RS20720 PF00072 Response regulator receiver domain CI104_RS20720 PF00497 Bacterial extracellular solute-binding proteins, family 3 CI104_RS20720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS20725 PF00072 Response regulator receiver domain CI104_RS20725 PF00196 Bacterial regulatory proteins, luxR family CI104_RS20730 PF07670 Nucleoside recognition CI104_RS20735 PF07670 Nucleoside recognition CI104_RS20740 PF01979 Amidohydrolase family CI104_RS20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS20745 PF03466 LysR substrate binding domain CI104_RS20750 PF01177 Asp/Glu/Hydantoin racemase CI104_RS20760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CI104_RS20775 PF00356 Bacterial regulatory proteins, lacI family CI104_RS20780 PF15977 Winged helix-turn-helix DNA binding CI104_RS20785 PF03797 Autotransporter beta-domain CI104_RS20790 PF13978 Protein of unknown function (DUF4223) CI104_RS20795 PF00005 ABC transporter CI104_RS20795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS20800 PF00005 ABC transporter CI104_RS20800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CI104_RS20805 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS20805 PF12911 N-terminal TM domain of oligopeptide transport permease C CI104_RS20810 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS20815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CI104_RS20820 PF07687 Peptidase dimerisation domain CI104_RS20820 PF01546 Peptidase family M20/M25/M40 CI104_RS20825 PF00005 ABC transporter CI104_RS20830 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS20835 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CI104_RS20840 PF01177 Asp/Glu/Hydantoin racemase CI104_RS20845 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS20850 PF03960 ArsC family CI104_RS20855 PF02040 Arsenical pump membrane protein CI104_RS20860 PF02374 Anion-transporting ATPase CI104_RS20865 PF06953 Arsenical resistance operon trans-acting repressor ArsD CI104_RS20870 PF01022 Bacterial regulatory protein, arsR family CI104_RS20880 PF01551 Peptidase family M23 CI104_RS20880 PF01476 LysM domain CI104_RS20885 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CI104_RS20885 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CI104_RS20890 PF03450 CO dehydrogenase flavoprotein C-terminal domain CI104_RS20890 PF00941 FAD binding domain in molybdopterin dehydrogenase CI104_RS20895 PF01799 [2Fe-2S] binding domain CI104_RS20895 PF00111 2Fe-2S iron-sulfur cluster binding domain CI104_RS20900 PF13188 PAS domain CI104_RS20900 PF02954 Bacterial regulatory protein, Fis family CI104_RS20900 PF00158 Sigma-54 interaction domain CI104_RS20905 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CI104_RS20905 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CI104_RS20910 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS20915 PF01546 Peptidase family M20/M25/M40 CI104_RS20915 PF07687 Peptidase dimerisation domain CI104_RS20920 PF01979 Amidohydrolase family CI104_RS20925 PF00696 Amino acid kinase family CI104_RS20930 PF02625 XdhC and CoxI family CI104_RS20930 PF13478 XdhC Rossmann domain CI104_RS20940 PF12804 MobA-like NTP transferase domain CI104_RS20945 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS20945 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CI104_RS20950 PF01979 Amidohydrolase family CI104_RS20955 PF00941 FAD binding domain in molybdopterin dehydrogenase CI104_RS20960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CI104_RS20960 PF01799 [2Fe-2S] binding domain CI104_RS20960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CI104_RS20965 PF00860 Permease family CI104_RS20970 PF01979 Amidohydrolase family CI104_RS20975 PF00860 Permease family CI104_RS20980 PF00860 Permease family CI104_RS20990 PF00293 NUDIX domain CI104_RS20995 PF00152 tRNA synthetases class II (D, K and N) CI104_RS20995 PF01336 OB-fold nucleic acid binding domain CI104_RS21005 PF17768 RecJ OB domain CI104_RS21005 PF02272 DHHA1 domain CI104_RS21005 PF01368 DHH family CI104_RS21010 PF13098 Thioredoxin-like domain CI104_RS21010 PF10411 Disulfide bond isomerase protein N-terminus CI104_RS21015 PF02899 Phage integrase, N-terminal SAM-like domain CI104_RS21015 PF00589 Phage integrase family CI104_RS21020 PF00258 Flavodoxin CI104_RS21025 PF07254 Membrane-bound toxin component of toxin-antitoxin system CI104_RS21030 PF03937 Flavinator of succinate dehydrogenase CI104_RS21035 PF01571 Aminomethyltransferase folate-binding domain CI104_RS21040 PF03006 Haemolysin-III related CI104_RS21045 PF04266 ASCH domain CI104_RS21050 PF01418 Helix-turn-helix domain, rpiR family CI104_RS21050 PF01380 SIS domain CI104_RS21055 PF00232 Glycosyl hydrolase family 1 CI104_RS21065 PF02347 Glycine cleavage system P-protein CI104_RS21070 PF01597 Glycine cleavage H-protein CI104_RS21075 PF08669 Glycine cleavage T-protein C-terminal barrel domain CI104_RS21075 PF01571 Aminomethyltransferase folate-binding domain CI104_RS21080 PF01494 FAD binding domain CI104_RS21085 PF01494 FAD binding domain CI104_RS21090 PF00557 Metallopeptidase family M24 CI104_RS21090 PF05195 Aminopeptidase P, N-terminal domain CI104_RS21095 PF03695 Uncharacterised protein family (UPF0149) CI104_RS21105 PF05164 Cell division protein ZapA CI104_RS21115 PF01812 5-formyltetrahydrofolate cyclo-ligase family CI104_RS21120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CI104_RS21120 PF01842 ACT domain CI104_RS21120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CI104_RS21125 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CI104_RS21130 PF03466 LysR substrate binding domain CI104_RS21130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS21135 PF03466 LysR substrate binding domain CI104_RS21135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS21140 PF01381 Helix-turn-helix CI104_RS21140 PF13521 AAA domain CI104_RS21145 PF18073 Rubredoxin metal binding domain CI104_RS21150 PF18429 Domain of unknown function (DUF5609) CI104_RS21155 PF10144 Bacterial virulence factor haemolysin CI104_RS21160 PF03099 Biotin/lipoate A/B protein ligase family CI104_RS21160 PF10437 Bacterial lipoate protein ligase C-terminus CI104_RS21165 PF01048 Phosphorylase superfamily CI104_RS21170 PF01676 Metalloenzyme superfamily CI104_RS21175 PF02885 Glycosyl transferase family, helical bundle domain CI104_RS21175 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CI104_RS21175 PF00591 Glycosyl transferase family, a/b domain CI104_RS21180 PF01791 DeoC/LacD family aldolase CI104_RS21185 PF11230 Protein of unknown function (DUF3029) CI104_RS21190 PF04055 Radical SAM superfamily CI104_RS21195 PF01026 TatD related DNase CI104_RS21200 PF01734 Patatin-like phospholipase CI104_RS21205 PF07043 Protein of unknown function (DUF1328) CI104_RS21210 PF04972 BON domain CI104_RS21215 PF16658 Class II release factor RF3, C-terminal domain CI104_RS21215 PF03144 Elongation factor Tu domain 2 CI104_RS21215 PF00009 Elongation factor Tu GTP binding domain CI104_RS21220 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS21225 PF00583 Acetyltransferase (GNAT) family CI104_RS21230 PF03603 DNA polymerase III psi subunit CI104_RS21235 PF08468 Methyltransferase small domain N-terminal CI104_RS21235 PF05175 Methyltransferase small domain CI104_RS21255 PF07256 Protein of unknown function (DUF1435) CI104_RS21260 PF17151 Periplasmic sensor domain CI104_RS21260 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS21265 PF11575 FhuF 2Fe-2S C-terminal domain CI104_RS21265 PF06276 Ferric iron reductase FhuF-like transporter CI104_RS21270 PF02378 Phosphotransferase system, EIIC CI104_RS21275 PF04073 Aminoacyl-tRNA editing domain CI104_RS21280 PF00196 Bacterial regulatory proteins, luxR family CI104_RS21285 PF00196 Bacterial regulatory proteins, luxR family CI104_RS21295 PF01494 FAD binding domain CI104_RS21305 PF06738 Putative threonine/serine exporter CI104_RS21310 PF12821 Threonine/Serine exporter, ThrE CI104_RS21315 PF17948 DnaT DNA-binding domain CI104_RS21320 PF01695 IstB-like ATP binding protein CI104_RS21325 PF10696 Protein of unknown function (DUF2501) CI104_RS21330 PF00884 Sulfatase CI104_RS21335 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS21335 PF00107 Zinc-binding dehydrogenase CI104_RS21340 PF07729 FCD domain CI104_RS21340 PF00392 Bacterial regulatory proteins, gntR family CI104_RS21345 PF03480 Bacterial extracellular solute-binding protein, family 7 CI104_RS21355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CI104_RS21360 PF00583 Acetyltransferase (GNAT) family CI104_RS21365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS21365 PF00672 HAMP domain CI104_RS21365 PF02203 Tar ligand binding domain homologue CI104_RS21370 PF02615 Malate/L-lactate dehydrogenase CI104_RS21375 PF02554 Carbon starvation protein CstA CI104_RS21375 PF13722 5TM C-terminal transporter carbon starvation CstA CI104_RS21380 PF04328 Selenoprotein, putative CI104_RS21385 PF07683 Cobalamin synthesis protein cobW C-terminal domain CI104_RS21385 PF02492 CobW/HypB/UreG, nucleotide-binding domain CI104_RS21400 PF02384 N-6 DNA Methylase CI104_RS21425 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS21425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS21435 PF06568 Domain of unknown function (DUF1127) CI104_RS21440 PF00155 Aminotransferase class I and II CI104_RS21440 PF00392 Bacterial regulatory proteins, gntR family CI104_RS21460 PF07690 Major Facilitator Superfamily CI104_RS21465 PF13378 Enolase C-terminal domain-like CI104_RS21465 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS21470 PF01263 Aldose 1-epimerase CI104_RS21475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CI104_RS21475 PF13378 Enolase C-terminal domain-like CI104_RS21485 PF07729 FCD domain CI104_RS21485 PF00392 Bacterial regulatory proteins, gntR family CI104_RS21490 PF00920 Dehydratase family CI104_RS21495 PF13932 GidA associated domain CI104_RS21495 PF01134 Glucose inhibited division protein A CI104_RS21500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CI104_RS21500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS21505 PF03328 HpcH/HpaI aldolase/citrate lyase family CI104_RS21510 PF07690 Major Facilitator Superfamily CI104_RS21515 PF08666 SAF domain CI104_RS21515 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CI104_RS21530 PF07690 Major Facilitator Superfamily CI104_RS21535 PF01053 Cys/Met metabolism PLP-dependent enzyme CI104_RS21540 PF00375 Sodium:dicarboxylate symporter family CI104_RS21545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS21545 PF03466 LysR substrate binding domain CI104_RS21550 PF04286 Protein of unknown function (DUF445) CI104_RS21560 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CI104_RS21565 PF01869 BadF/BadG/BcrA/BcrD ATPase family CI104_RS21570 PF11823 Protein of unknown function (DUF3343) CI104_RS21575 PF06977 SdiA-regulated CI104_RS21580 PF06779 Uncharacterised MFS-type transporter YbfB CI104_RS21600 PF06715 Gp5 C-terminal repeat (3 copies) CI104_RS21600 PF04717 Type VI secretion system, phage-baseplate injector CI104_RS21605 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS21605 PF17871 AAA lid domain CI104_RS21605 PF07724 AAA domain (Cdc48 subfamily) CI104_RS21605 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS21635 PF07690 Major Facilitator Superfamily CI104_RS21640 PF00682 HMGL-like CI104_RS21645 PF02515 CoA-transferase family III CI104_RS21650 PF02954 Bacterial regulatory protein, Fis family CI104_RS21650 PF00158 Sigma-54 interaction domain CI104_RS21650 PF13426 PAS domain CI104_RS21655 PF01614 Bacterial transcriptional regulator CI104_RS21655 PF09339 IclR helix-turn-helix domain CI104_RS21660 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CI104_RS21660 PF04616 Glycosyl hydrolases family 43 CI104_RS21670 PF00920 Dehydratase family CI104_RS21680 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS21680 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS21685 PF04198 Putative sugar-binding domain CI104_RS21690 PF00005 ABC transporter CI104_RS21695 PF02653 Branched-chain amino acid transport system / permease component CI104_RS21700 PF02653 Branched-chain amino acid transport system / permease component CI104_RS21705 PF13407 Periplasmic binding protein domain CI104_RS21710 PF01791 DeoC/LacD family aldolase CI104_RS21715 PF03992 Antibiotic biosynthesis monooxygenase CI104_RS21720 PF00834 Ribulose-phosphate 3 epimerase family CI104_RS21730 PF06755 CbtA_toxin of type IV toxin-antitoxin system CI104_RS21735 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CI104_RS21740 PF06174 Protein of unknown function (DUF987) CI104_RS21745 PF04002 RadC-like JAB domain CI104_RS21750 PF03230 Antirestriction protein CI104_RS21755 PF06067 Domain of unknown function (DUF932) CI104_RS21770 PF08220 DeoR-like helix-turn-helix domain CI104_RS21770 PF13280 WYL domain CI104_RS21775 PF01926 50S ribosome-binding GTPase CI104_RS21810 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS21815 PF00290 Tryptophan synthase alpha chain CI104_RS21825 PF13443 Cro/C1-type HTH DNA-binding domain CI104_RS21835 PF09857 Putative toxin of bacterial toxin-antitoxin pair CI104_RS21840 PF13847 Methyltransferase domain CI104_RS21860 PF01242 6-pyruvoyl tetrahydropterin synthase CI104_RS21865 PF00271 Helicase conserved C-terminal domain CI104_RS21865 PF00176 SNF2 family N-terminal domain CI104_RS21865 PF18339 RapA N-terminal Tudor like domain 1 CI104_RS21865 PF18337 RapA N-terminal Tudor like domain CI104_RS21865 PF12137 RNA polymerase recycling family C-terminal CI104_RS21870 PF09382 RQC domain CI104_RS21870 PF00570 HRDC domain CI104_RS21870 PF16124 RecQ zinc-binding CI104_RS21870 PF00270 DEAD/DEAH box helicase CI104_RS21870 PF00271 Helicase conserved C-terminal domain CI104_RS21890 PF16124 RecQ zinc-binding CI104_RS21890 PF00570 HRDC domain CI104_RS21890 PF09382 RQC domain CI104_RS21890 PF00271 Helicase conserved C-terminal domain CI104_RS21890 PF00270 DEAD/DEAH box helicase CI104_RS21925 PF13356 Arm DNA-binding domain CI104_RS21925 PF00589 Phage integrase family CI104_RS21935 PF00107 Zinc-binding dehydrogenase CI104_RS21935 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS21940 PF01202 Shikimate kinase CI104_RS21945 PF00107 Zinc-binding dehydrogenase CI104_RS21945 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS21950 PF00106 short chain dehydrogenase CI104_RS21955 PF02447 GntP family permease CI104_RS21960 PF00356 Bacterial regulatory proteins, lacI family CI104_RS21965 PF05872 Bacterial protein of unknown function (DUF853) CI104_RS21970 PF03739 Lipopolysaccharide export system permease LptF/LptG CI104_RS21975 PF03739 Lipopolysaccharide export system permease LptF/LptG CI104_RS21985 PF02789 Cytosol aminopeptidase family, N-terminal domain CI104_RS21985 PF00883 Cytosol aminopeptidase family, catalytic domain CI104_RS21990 PF04364 DNA polymerase III chi subunit, HolC CI104_RS21995 PF00133 tRNA synthetases class I (I, L, M and V) CI104_RS21995 PF10458 Valyl tRNA synthetase tRNA binding arm CI104_RS21995 PF08264 Anticodon-binding domain of tRNA CI104_RS22000 PF05987 Bacterial protein of unknown function (DUF898) CI104_RS22005 PF00583 Acetyltransferase (GNAT) family CI104_RS22015 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CI104_RS22020 PF06877 Regulator of ribonuclease activity B CI104_RS22025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CI104_RS22025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CI104_RS22030 PF00384 Molybdopterin oxidoreductase CI104_RS22030 PF18364 Molybdopterin oxidoreductase N-terminal domain CI104_RS22030 PF01568 Molydopterin dinucleotide binding domain CI104_RS22035 PF03264 NapC/NirT cytochrome c family, N-terminal region CI104_RS22040 PF04074 YhcH/YjgK/YiaL CI104_RS22050 PF00696 Amino acid kinase family CI104_RS22055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CI104_RS22055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CI104_RS22060 PF01168 Alanine racemase, N-terminal domain CI104_RS22065 PF13520 Amino acid permease CI104_RS22070 PF01316 Arginine repressor, DNA binding domain CI104_RS22070 PF02863 Arginine repressor, C-terminal domain CI104_RS22080 PF08052 PyrBI operon leader peptide CI104_RS22085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CI104_RS22085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CI104_RS22090 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CI104_RS22090 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CI104_RS22095 PF01042 Endoribonuclease L-PSP CI104_RS22100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CI104_RS22110 PF03480 Bacterial extracellular solute-binding protein, family 7 CI104_RS22115 PF00689 Cation transporting ATPase, C-terminus CI104_RS22115 PF00690 Cation transporter/ATPase, N-terminus CI104_RS22120 PF00356 Bacterial regulatory proteins, lacI family CI104_RS22125 PF02378 Phosphotransferase system, EIIC CI104_RS22125 PF00367 phosphotransferase system, EIIB CI104_RS22130 PF11941 Domain of unknown function (DUF3459) CI104_RS22130 PF00128 Alpha amylase, catalytic domain CI104_RS22135 PF13597 Anaerobic ribonucleoside-triphosphate reductase CI104_RS22135 PF03477 ATP cone domain CI104_RS22145 PF05043 Mga helix-turn-helix domain CI104_RS22145 PF08279 HTH domain CI104_RS22145 PF00874 PRD domain CI104_RS22145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS22150 PF07071 KDGP aldolase CI104_RS22155 PF03841 L-seryl-tRNA selenium transferase CI104_RS22160 PF01979 Amidohydrolase family CI104_RS22195 PF03466 LysR substrate binding domain CI104_RS22195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS22200 PF07690 Major Facilitator Superfamily CI104_RS22205 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CI104_RS22210 PF07361 Cytochrome b562 CI104_RS22215 PF01523 Putative modulator of DNA gyrase CI104_RS22220 PF04751 Protein of unknown function (DUF615) CI104_RS22230 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CI104_RS22235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS22235 PF02203 Tar ligand binding domain homologue CI104_RS22235 PF00672 HAMP domain CI104_RS22240 PF01306 LacY proton/sugar symporter CI104_RS22245 PF00294 pfkB family carbohydrate kinase CI104_RS22250 PF08244 Glycosyl hydrolases family 32 C terminal CI104_RS22250 PF00251 Glycosyl hydrolases family 32 N-terminal domain CI104_RS22255 PF00356 Bacterial regulatory proteins, lacI family CI104_RS22255 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CI104_RS22260 PF02653 Branched-chain amino acid transport system / permease component CI104_RS22265 PF02653 Branched-chain amino acid transport system / permease component CI104_RS22270 PF00005 ABC transporter CI104_RS22275 PF13407 Periplasmic binding protein domain CI104_RS22280 PF00719 Inorganic pyrophosphatase CI104_RS22285 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CI104_RS22290 PF04357 TamB, inner membrane protein subunit of TAM complex CI104_RS22295 PF07244 Surface antigen variable number repeat CI104_RS22295 PF17243 POTRA domain TamA domain 1 CI104_RS22295 PF01103 Surface antigen CI104_RS22300 PF01625 Peptide methionine sulfoxide reductase CI104_RS22305 PF00356 Bacterial regulatory proteins, lacI family CI104_RS22310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS22310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS22315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS22315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS22325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CI104_RS22325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CI104_RS22335 PF00571 CBS domain CI104_RS22335 PF01595 Cyclin M transmembrane N-terminal domain CI104_RS22335 PF03471 Transporter associated domain CI104_RS22340 PF06526 Protein of unknown function (DUF1107) CI104_RS22350 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CI104_RS22355 PF00459 Inositol monophosphatase family CI104_RS22360 PF02872 5'-nucleotidase, C-terminal domain CI104_RS22360 PF00149 Calcineurin-like phosphoesterase CI104_RS22365 PF01638 HxlR-like helix-turn-helix CI104_RS22370 PF05368 NmrA-like family CI104_RS22380 PF00892 EamA-like transporter family CI104_RS22385 PF04405 Domain of Unknown function (DUF542) CI104_RS22385 PF01814 Hemerythrin HHE cation binding domain CI104_RS22390 PF00324 Amino acid permease CI104_RS22395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CI104_RS22395 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CI104_RS22400 PF04225 Opacity-associated protein A LysM-like domain CI104_RS22400 PF08525 Opacity-associated protein A N-terminal motif CI104_RS22410 PF03948 Ribosomal protein L9, C-terminal domain CI104_RS22410 PF01281 Ribosomal protein L9, N-terminal domain CI104_RS22415 PF01084 Ribosomal protein S18 CI104_RS22420 PF00436 Single-strand binding protein family CI104_RS22425 PF01250 Ribosomal protein S6 CI104_RS22430 PF01925 Sulfite exporter TauE/SafE CI104_RS22435 PF07338 Protein of unknown function (DUF1471) CI104_RS22440 PF01261 Xylose isomerase-like TIM barrel CI104_RS22445 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CI104_RS22450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS22455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS22460 PF03611 PTS system sugar-specific permease component CI104_RS22470 PF00455 DeoR C terminal sensor domain CI104_RS22470 PF08220 DeoR-like helix-turn-helix domain CI104_RS22475 PF00326 Prolyl oligopeptidase family CI104_RS22480 PF07338 Protein of unknown function (DUF1471) CI104_RS22485 PF07338 Protein of unknown function (DUF1471) CI104_RS22490 PF02770 Acyl-CoA dehydrogenase, middle domain CI104_RS22490 PF18158 Adaptive response protein AidB N-terminal domain CI104_RS22490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CI104_RS22495 PF00588 SpoU rRNA Methylase family CI104_RS22495 PF08032 RNA 2'-O ribose methyltransferase substrate binding CI104_RS22500 PF08461 Ribonuclease R winged-helix domain CI104_RS22500 PF00773 RNB domain CI104_RS22500 PF00575 S1 RNA binding domain CI104_RS22500 PF08206 Ribonuclease B OB domain CI104_RS22500 PF17876 Cold shock domain CI104_RS22505 PF02082 Transcriptional regulator CI104_RS22510 PF00709 Adenylosuccinate synthetase CI104_RS22515 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CI104_RS22520 PF01145 SPFH domain / Band 7 family CI104_RS22525 PF01145 SPFH domain / Band 7 family CI104_RS22525 PF12221 Bacterial membrane protein N terminal CI104_RS22530 PF16360 GTP-binding GTPase Middle Region CI104_RS22530 PF13167 GTP-binding GTPase N-terminal CI104_RS22530 PF01926 50S ribosome-binding GTPase CI104_RS22535 PF17209 Hfq protein CI104_RS22545 PF08676 MutL C terminal dimerisation domain CI104_RS22545 PF01119 DNA mismatch repair protein, C-terminal domain CI104_RS22550 PF01520 N-acetylmuramoyl-L-alanine amidase CI104_RS22555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CI104_RS22560 PF01256 Carbohydrate kinase CI104_RS22560 PF03853 YjeF-related protein N-terminus CI104_RS22565 PF08331 Domain of unknown function (DUF1730) CI104_RS22585 PF00929 Exonuclease CI104_RS22590 PF03193 RsgA GTPase CI104_RS22595 PF02666 Phosphatidylserine decarboxylase CI104_RS22600 PF12794 Mechanosensitive ion channel inner membrane domain 1 CI104_RS22600 PF12795 Mechanosensitive ion channel porin domain CI104_RS22600 PF00924 Mechanosensitive ion channel CI104_RS22605 PF10840 Protein of unknown function (DUF2645) CI104_RS22610 PF00152 tRNA synthetases class II (D, K and N) CI104_RS22615 PF00890 FAD binding domain CI104_RS22615 PF02910 Fumarate reductase flavoprotein C-term CI104_RS22620 PF13085 2Fe-2S iron-sulfur cluster binding domain CI104_RS22620 PF13183 4Fe-4S dicluster domain CI104_RS22625 PF02300 Fumarate reductase subunit C CI104_RS22630 PF02313 Fumarate reductase subunit D CI104_RS22635 PF08212 Lipocalin-like domain CI104_RS22640 PF00893 Small Multidrug Resistance protein CI104_RS22645 PF00196 Bacterial regulatory proteins, luxR family CI104_RS22650 PF08085 Entericidin EcnA/B family CI104_RS22655 PF08085 Entericidin EcnA/B family CI104_RS22660 PF01132 Elongation factor P (EF-P) OB domain CI104_RS22660 PF08207 Elongation factor P (EF-P) KOW-like domain CI104_RS22660 PF09285 Elongation factor P, C-terminal CI104_RS22665 PF04055 Radical SAM superfamily CI104_RS22670 PF15922 YjeJ-like CI104_RS22675 PF13698 Domain of unknown function (DUF4156) CI104_RS22685 PF00118 TCP-1/cpn60 chaperonin family CI104_RS22690 PF00166 Chaperonin 10 Kd subunit CI104_RS22695 PF13520 Amino acid permease CI104_RS22700 PF04186 FxsA cytoplasmic membrane protein CI104_RS22705 PF00206 Lyase CI104_RS22705 PF10415 Fumarase C C-terminus CI104_RS22710 PF03605 Anaerobic c4-dicarboxylate membrane transporter CI104_RS22715 PF03091 CutA1 divalent ion tolerance protein CI104_RS22720 PF11412 Disulphide bond corrector protein DsbC CI104_RS22720 PF02683 Cytochrome C biogenesis protein transmembrane region CI104_RS22740 PF01320 Colicin immunity protein / pyocin immunity protein CI104_RS22760 PF00419 Fimbrial protein CI104_RS22765 PF00419 Fimbrial protein CI104_RS22780 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS22780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS22785 PF00577 Outer membrane usher protein CI104_RS22785 PF13953 PapC C-terminal domain CI104_RS22785 PF13954 PapC N-terminal domain CI104_RS22795 PF00419 Fimbrial protein CI104_RS22840 PF00109 Beta-ketoacyl synthase, N-terminal domain CI104_RS22840 PF02801 Beta-ketoacyl synthase, C-terminal domain CI104_RS22845 PF02321 Outer membrane efflux protein CI104_RS22850 PF12704 MacB-like periplasmic core domain CI104_RS22850 PF02687 FtsX-like permease family CI104_RS22850 PF00005 ABC transporter CI104_RS22855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS22860 PF00664 ABC transporter transmembrane region CI104_RS22860 PF00005 ABC transporter CI104_RS22885 PF00419 Fimbrial protein CI104_RS22890 PF00419 Fimbrial protein CI104_RS22900 PF02753 Pili assembly chaperone PapD, C-terminal domain CI104_RS22900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CI104_RS22905 PF00577 Outer membrane usher protein CI104_RS22905 PF13953 PapC C-terminal domain CI104_RS22905 PF13954 PapC N-terminal domain CI104_RS22910 PF00419 Fimbrial protein CI104_RS22915 PF00419 Fimbrial protein CI104_RS22920 PF00037 4Fe-4S binding domain CI104_RS22920 PF12838 4Fe-4S dicluster domain CI104_RS22925 PF02613 Nitrate reductase delta subunit CI104_RS22930 PF04976 DMSO reductase anchor subunit (DmsC) CI104_RS22935 PF13247 4Fe-4S dicluster domain CI104_RS22935 PF12800 4Fe-4S binding domain CI104_RS22940 PF01568 Molydopterin dinucleotide binding domain CI104_RS22940 PF00384 Molybdopterin oxidoreductase CI104_RS22940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS22945 PF03824 High-affinity nickel-transport protein CI104_RS22950 PF00989 PAS fold CI104_RS22950 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CI104_RS22950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS22950 PF17203 Single cache domain 3 CI104_RS22955 PF00072 Response regulator receiver domain CI104_RS22960 PF03605 Anaerobic c4-dicarboxylate membrane transporter CI104_RS22965 PF05683 Fumarase C-terminus CI104_RS22965 PF05681 Fumarate hydratase (Fumerase) CI104_RS22970 PF09997 Predicted membrane protein (DUF2238) CI104_RS22975 PF04193 PQ loop repeat CI104_RS22985 PF11975 Family 4 glycosyl hydrolase C-terminal domain CI104_RS22985 PF02056 Family 4 glycosyl hydrolase CI104_RS22990 PF12833 Helix-turn-helix domain CI104_RS22995 PF01276 Orn/Lys/Arg decarboxylase, major domain CI104_RS22995 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CI104_RS22995 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CI104_RS23005 PF12833 Helix-turn-helix domain CI104_RS23010 PF13520 Amino acid permease CI104_RS23015 PF08019 Phosphoethanolamine transferase EptA/EptB CI104_RS23015 PF00884 Sulfatase CI104_RS23020 PF00486 Transcriptional regulatory protein, C terminal CI104_RS23020 PF00072 Response regulator receiver domain CI104_RS23025 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS23025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS23035 PF08946 Osmosensory transporter coiled coil CI104_RS23035 PF00083 Sugar (and other) transporter CI104_RS23040 PF03812 2-keto-3-deoxygluconate permease CI104_RS23045 PF13990 YjcZ-like protein CI104_RS23050 PF00350 Dynamin family CI104_RS23055 PF08274 PhnA Zinc-Ribbon CI104_RS23055 PF03831 PhnA domain CI104_RS23060 PF06983 3-demethylubiquinone-9 3-methyltransferase CI104_RS23065 PF00005 ABC transporter CI104_RS23075 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS23080 PF07702 UTRA domain CI104_RS23080 PF00392 Bacterial regulatory proteins, gntR family CI104_RS23085 PF06754 Phosphonate metabolism protein PhnG CI104_RS23090 PF05845 Bacterial phosphonate metabolism protein (PhnH) CI104_RS23095 PF05861 Bacterial phosphonate metabolism protein (PhnI) CI104_RS23100 PF06007 Phosphonate metabolism protein PhnJ CI104_RS23105 PF00005 ABC transporter CI104_RS23110 PF00005 ABC transporter CI104_RS23115 PF07969 Amidohydrolase family CI104_RS23125 PF00583 Acetyltransferase (GNAT) family CI104_RS23130 PF12706 Beta-lactamase superfamily domain CI104_RS23145 PF08238 Sel1 repeat CI104_RS23150 PF00375 Sodium:dicarboxylate symporter family CI104_RS23165 PF03918 Cytochrome C biogenesis protein CI104_RS23170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CI104_RS23170 PF01578 Cytochrome C assembly protein CI104_RS23175 PF03916 Polysulphide reductase, NrfD CI104_RS23180 PF00037 4Fe-4S binding domain CI104_RS23180 PF13247 4Fe-4S dicluster domain CI104_RS23185 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CI104_RS23185 PF13435 Cytochrome c554 and c-prime CI104_RS23190 PF02335 Cytochrome c552 CI104_RS23205 PF13737 Transposase DDE domain CI104_RS23215 PF00501 AMP-binding enzyme CI104_RS23215 PF13193 AMP-binding enzyme C-terminal domain CI104_RS23215 PF16177 Acetyl-coenzyme A synthetase N-terminus CI104_RS23220 PF04341 Protein of unknown function, DUF485 CI104_RS23225 PF00474 Sodium:solute symporter family CI104_RS23230 PF04172 LrgB-like family CI104_RS23235 PF03788 LrgA family CI104_RS23240 PF03466 LysR substrate binding domain CI104_RS23240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS23245 PF00999 Sodium/hydrogen exchanger family CI104_RS23255 PF00860 Permease family CI104_RS23270 PF00043 Glutathione S-transferase, C-terminal domain CI104_RS23270 PF02798 Glutathione S-transferase, N-terminal domain CI104_RS23280 PF09278 MerR, DNA binding CI104_RS23280 PF00376 MerR family regulatory protein CI104_RS23285 PF12833 Helix-turn-helix domain CI104_RS23290 PF00563 EAL domain CI104_RS23290 PF12792 CSS motif domain associated with EAL CI104_RS23295 PF15940 Family of unknown function CI104_RS23300 PF00689 Cation transporting ATPase, C-terminus CI104_RS23300 PF00690 Cation transporter/ATPase, N-terminus CI104_RS23305 PF00582 Universal stress protein family CI104_RS23310 PF00436 Single-strand binding protein family CI104_RS23315 PF17760 UvrA interaction domain CI104_RS23315 PF17755 UvrA DNA-binding domain CI104_RS23315 PF00005 ABC transporter CI104_RS23320 PF04237 YjbR CI104_RS23325 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CI104_RS23330 PF00155 Aminotransferase class I and II CI104_RS23335 PF00842 Alanine racemase, C-terminal domain CI104_RS23335 PF01168 Alanine racemase, N-terminal domain CI104_RS23340 PF00772 DnaB-like helicase N terminal domain CI104_RS23340 PF03796 DnaB-like helicase C terminal domain CI104_RS23345 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS23345 PF00107 Zinc-binding dehydrogenase CI104_RS23350 PF09583 Phage shock protein G (Phageshock_PspG) CI104_RS23355 PF01207 Dihydrouridine synthase (Dus) CI104_RS23365 PF01475 Ferric uptake regulator family CI104_RS23370 PF05532 CsbD-like CI104_RS23375 PF01554 MatE CI104_RS23380 PF00717 Peptidase S24-like CI104_RS23380 PF01726 LexA DNA binding domain CI104_RS23385 PF01219 Prokaryotic diacylglycerol kinase CI104_RS23390 PF01553 Acyltransferase CI104_RS23395 PF01040 UbiA prenyltransferase family CI104_RS23400 PF04345 Chorismate lyase CI104_RS23410 PF07148 Maltose operon periplasmic protein precursor (MalM) CI104_RS23415 PF02264 LamB porin CI104_RS23420 PF00005 ABC transporter CI104_RS23420 PF17912 MalK OB fold domain CI104_RS23425 PF01547 Bacterial extracellular solute-binding protein CI104_RS23430 PF14785 Maltose transport system permease protein MalF P2 domain CI104_RS23430 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS23435 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS23440 PF06146 Phosphate-starvation-inducible E CI104_RS23445 PF06082 Exopolysaccharide biosynthesis protein YbjH CI104_RS23450 PF06251 Capsule biosynthesis GfcC CI104_RS23455 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CI104_RS23460 PF11106 Exopolysaccharide production protein YjbE CI104_RS23465 PF00342 Phosphoglucose isomerase CI104_RS23470 PF01842 ACT domain CI104_RS23470 PF00696 Amino acid kinase family CI104_RS23475 PF10127 RNA repair pathway DNA polymerase beta family CI104_RS23480 PF01139 tRNA-splicing ligase RtcB CI104_RS23495 PF00158 Sigma-54 interaction domain CI104_RS23495 PF06956 Regulator of RNA terminal phosphate cyclase CI104_RS23500 PF01758 Sodium Bile acid symporter family CI104_RS23520 PF08220 DeoR-like helix-turn-helix domain CI104_RS23520 PF00455 DeoR C terminal sensor domain CI104_RS23525 PF11656 YjbD family (DUF3811) CI104_RS23530 PF00849 RNA pseudouridylate synthase CI104_RS23530 PF01479 S4 domain CI104_RS23535 PF13936 Helix-turn-helix domain CI104_RS23535 PF04198 Putative sugar-binding domain CI104_RS23540 PF00106 short chain dehydrogenase CI104_RS23545 PF03610 PTS system fructose IIA component CI104_RS23550 PF03830 PTS system sorbose subfamily IIB component CI104_RS23555 PF03609 PTS system sorbose-specific iic component CI104_RS23560 PF03613 PTS system mannose/fructose/sorbose family IID component CI104_RS23565 PF00107 Zinc-binding dehydrogenase CI104_RS23565 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS23570 PF08501 Shikimate dehydrogenase substrate binding domain CI104_RS23580 PF16168 Adhesin of bacterial autotransporter system, probable stalk CI104_RS23580 PF03797 Autotransporter beta-domain CI104_RS23580 PF13018 Extended Signal Peptide of Type V secretion system CI104_RS23580 PF03212 Pertactin CI104_RS23590 PF03575 Peptidase family S51 CI104_RS23595 PF02690 Na+/Pi-cotransporter CI104_RS23600 PF02607 B12 binding domain CI104_RS23600 PF02310 B12 binding domain CI104_RS23600 PF02965 Vitamin B12 dependent methionine synthase, activation domain CI104_RS23600 PF00809 Pterin binding enzyme CI104_RS23600 PF02574 Homocysteine S-methyltransferase CI104_RS23605 PF09339 IclR helix-turn-helix domain CI104_RS23605 PF01614 Bacterial transcriptional regulator CI104_RS23610 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CI104_RS23615 PF00463 Isocitrate lyase family CI104_RS23620 PF01274 Malate synthase CI104_RS23625 PF04204 Homoserine O-succinyltransferase CI104_RS23630 PF13673 Acetyltransferase (GNAT) domain CI104_RS23655 PF01808 AICARFT/IMPCHase bienzyme CI104_RS23655 PF02142 MGS-like domain CI104_RS23660 PF02844 Phosphoribosylglycinamide synthetase, N domain CI104_RS23660 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CI104_RS23660 PF02843 Phosphoribosylglycinamide synthetase, C domain CI104_RS23665 PF00072 Response regulator receiver domain CI104_RS23665 PF00158 Sigma-54 interaction domain CI104_RS23665 PF02954 Bacterial regulatory protein, Fis family CI104_RS23670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS23670 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS23675 PF13801 Heavy-metal resistance CI104_RS23680 PF07356 Protein of unknown function (DUF1481) CI104_RS23685 PF00216 Bacterial DNA-binding protein CI104_RS23690 PF04222 Protein of unknown function (DUF416) CI104_RS23695 PF04493 Endonuclease V CI104_RS23700 PF01208 Uroporphyrinogen decarboxylase (URO-D) CI104_RS23705 PF00293 NUDIX domain CI104_RS23705 PF09297 NADH pyrophosphatase zinc ribbon domain CI104_RS23710 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CI104_RS23715 PF13667 ThiC-associated domain CI104_RS23715 PF01964 Radical SAM ThiC family CI104_RS23720 PF02581 Thiamine monophosphate synthase CI104_RS23725 PF00899 ThiF family CI104_RS23730 PF02597 ThiS family CI104_RS23735 PF05690 Thiazole biosynthesis protein ThiG CI104_RS23740 PF06968 Biotin and Thiamin Synthesis associated domain CI104_RS23740 PF04055 Radical SAM superfamily CI104_RS23745 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS23750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS23755 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CI104_RS23760 PF04997 RNA polymerase Rpb1, domain 1 CI104_RS23760 PF00623 RNA polymerase Rpb1, domain 2 CI104_RS23760 PF04983 RNA polymerase Rpb1, domain 3 CI104_RS23760 PF05000 RNA polymerase Rpb1, domain 4 CI104_RS23760 PF04998 RNA polymerase Rpb1, domain 5 CI104_RS23765 PF10385 RNA polymerase beta subunit external 1 domain CI104_RS23765 PF04560 RNA polymerase Rpb2, domain 7 CI104_RS23765 PF04565 RNA polymerase Rpb2, domain 3 CI104_RS23765 PF04561 RNA polymerase Rpb2, domain 2 CI104_RS23765 PF04563 RNA polymerase beta subunit CI104_RS23765 PF00562 RNA polymerase Rpb2, domain 6 CI104_RS23770 PF16320 Ribosomal protein L7/L12 dimerisation domain CI104_RS23770 PF00542 Ribosomal protein L7/L12 C-terminal domain CI104_RS23775 PF00466 Ribosomal protein L10 CI104_RS23785 PF00687 Ribosomal protein L1p/L10e family CI104_RS23790 PF00298 Ribosomal protein L11, RNA binding domain CI104_RS23790 PF03946 Ribosomal protein L11, N-terminal domain CI104_RS23795 PF00467 KOW motif CI104_RS23795 PF02357 Transcription termination factor nusG CI104_RS23800 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CI104_RS23805 PF00009 Elongation factor Tu GTP binding domain CI104_RS23805 PF03144 Elongation factor Tu domain 2 CI104_RS23805 PF03143 Elongation factor Tu C-terminal domain CI104_RS23840 PF00485 Phosphoribulokinase / Uridine kinase family CI104_RS23845 PF02237 Biotin protein ligase C terminal domain CI104_RS23845 PF03099 Biotin/lipoate A/B protein ligase family CI104_RS23845 PF08279 HTH domain CI104_RS23850 PF01565 FAD binding domain CI104_RS23850 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CI104_RS23880 PF01177 Asp/Glu/Hydantoin racemase CI104_RS23885 PF00593 TonB dependent receptor CI104_RS23885 PF07715 TonB-dependent Receptor Plug Domain CI104_RS23890 PF05958 tRNA (Uracil-5-)-methyltransferase CI104_RS23895 PF07226 Protein of unknown function (DUF1422) CI104_RS23900 PF00440 Bacterial regulatory proteins, tetR family CI104_RS23905 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CI104_RS23905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS23910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS23910 PF03466 LysR substrate binding domain CI104_RS23915 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS23915 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS23920 PF01261 Xylose isomerase-like TIM barrel CI104_RS23925 PF02653 Branched-chain amino acid transport system / permease component CI104_RS23930 PF02653 Branched-chain amino acid transport system / permease component CI104_RS23935 PF00005 ABC transporter CI104_RS23945 PF08220 DeoR-like helix-turn-helix domain CI104_RS23945 PF00455 DeoR C terminal sensor domain CI104_RS23950 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS23955 PF14698 Argininosuccinate lyase C-terminal CI104_RS23955 PF00206 Lyase CI104_RS23960 PF00696 Amino acid kinase family CI104_RS23965 PF02774 Semialdehyde dehydrogenase, dimerisation domain CI104_RS23965 PF01118 Semialdehyde dehydrogenase, NAD binding domain CI104_RS23970 PF01546 Peptidase family M20/M25/M40 CI104_RS23970 PF07687 Peptidase dimerisation domain CI104_RS23975 PF00311 Phosphoenolpyruvate carboxylase CI104_RS23980 PF00884 Sulfatase CI104_RS23985 PF12833 Helix-turn-helix domain CI104_RS23990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS23995 PF04055 Radical SAM superfamily CI104_RS24000 PF01228 Glycine radical CI104_RS24000 PF02901 Pyruvate formate lyase-like CI104_RS24005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CI104_RS24015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS24015 PF00381 PTS HPr component phosphorylation site CI104_RS24015 PF02896 PEP-utilising enzyme, TIM barrel domain CI104_RS24015 PF05524 PEP-utilising enzyme, N-terminal CI104_RS24015 PF00391 PEP-utilising enzyme, mobile domain CI104_RS24020 PF00923 Transaldolase/Fructose-6-phosphate aldolase CI104_RS24025 PF00465 Iron-containing alcohol dehydrogenase CI104_RS24030 PF00892 EamA-like transporter family CI104_RS24035 PF00141 Peroxidase CI104_RS24040 PF02219 Methylenetetrahydrofolate reductase CI104_RS24045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS24045 PF03466 LysR substrate binding domain CI104_RS24055 PF00696 Amino acid kinase family CI104_RS24055 PF00742 Homoserine dehydrogenase CI104_RS24055 PF03447 Homoserine dehydrogenase, NAD binding domain CI104_RS24060 PF01053 Cys/Met metabolism PLP-dependent enzyme CI104_RS24065 PF01340 Met Apo-repressor, MetJ CI104_RS24080 PF06178 Oligogalacturonate-specific porin protein (KdgM) CI104_RS24085 PF01197 Ribosomal protein L31 CI104_RS24090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CI104_RS24090 PF18074 Primosomal protein N C-terminal domain CI104_RS24090 PF17764 3′ DNA-binding domain (3′BD) CI104_RS24090 PF00271 Helicase conserved C-terminal domain CI104_RS24090 PF00270 DEAD/DEAH box helicase CI104_RS24095 PF00356 Bacterial regulatory proteins, lacI family CI104_RS24100 PF05036 Sporulation related domain CI104_RS24105 PF00227 Proteasome subunit CI104_RS24110 PF00004 ATPase family associated with various cellular activities (AAA) CI104_RS24110 PF07724 AAA domain (Cdc48 subfamily) CI104_RS24110 PF10431 C-terminal, D2-small domain, of ClpB protein CI104_RS24115 PF01040 UbiA prenyltransferase family CI104_RS24120 PF03737 Aldolase/RraA CI104_RS24130 PF06005 Cell division protein ZapB CI104_RS24135 PF00230 Major intrinsic protein CI104_RS24140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS24140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS24145 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CI104_RS24150 PF00175 Oxidoreductase NAD-binding domain CI104_RS24150 PF00970 Oxidoreductase FAD-binding domain CI104_RS24155 PF05656 Protein of unknown function (DUF805) CI104_RS24160 PF07305 Protein of unknown function (DUF1454) CI104_RS24165 PF00121 Triosephosphate isomerase CI104_RS24170 PF00939 Sodium:sulfate symporter transmembrane region CI104_RS24180 PF00392 Bacterial regulatory proteins, gntR family CI104_RS24180 PF00155 Aminotransferase class I and II CI104_RS24190 PF00294 pfkB family carbohydrate kinase CI104_RS24200 PF02611 CDP-diacylglycerol pyrophosphatase CI104_RS24210 PF00365 Phosphofructokinase CI104_RS24215 PF16916 Dimerisation domain of Zinc Transporter CI104_RS24215 PF01545 Cation efflux family CI104_RS24220 PF07813 LTXXQ motif family protein CI104_RS24225 PF00486 Transcriptional regulatory protein, C terminal CI104_RS24225 PF00072 Response regulator receiver domain CI104_RS24230 PF00672 HAMP domain CI104_RS24230 PF16527 Two-component sensor protein CpxA, periplasmic domain CI104_RS24230 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS24230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS24235 PF03473 MOSC domain CI104_RS24235 PF03475 3-alpha domain CI104_RS24240 PF00701 Dihydrodipicolinate synthetase family CI104_RS24245 PF03812 2-keto-3-deoxygluconate permease CI104_RS24250 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CI104_RS24250 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CI104_RS24255 PF06379 L-rhamnose-proton symport protein (RhaT) CI104_RS24260 PF02311 AraC-like ligand binding domain CI104_RS24260 PF12833 Helix-turn-helix domain CI104_RS24265 PF02311 AraC-like ligand binding domain CI104_RS24265 PF12833 Helix-turn-helix domain CI104_RS24270 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CI104_RS24270 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CI104_RS24275 PF06134 L-rhamnose isomerase (RhaA) CI104_RS24280 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS24285 PF13407 Periplasmic binding protein domain CI104_RS24290 PF00005 ABC transporter CI104_RS24295 PF02653 Branched-chain amino acid transport system / permease component CI104_RS24300 PF02653 Branched-chain amino acid transport system / permease component CI104_RS24305 PF00465 Iron-containing alcohol dehydrogenase CI104_RS24310 PF05336 L-rhamnose mutarotase CI104_RS24325 PF03591 AzlC protein CI104_RS24340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CI104_RS24350 PF01116 Fructose-bisphosphate aldolase class-II CI104_RS24365 PF00365 Phosphofructokinase CI104_RS24380 PF02634 FdhD/NarQ family CI104_RS24385 PF00384 Molybdopterin oxidoreductase CI104_RS24385 PF01568 Molydopterin dinucleotide binding domain CI104_RS24385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS24390 PF01568 Molydopterin dinucleotide binding domain CI104_RS24390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CI104_RS24390 PF00384 Molybdopterin oxidoreductase CI104_RS24395 PF13247 4Fe-4S dicluster domain CI104_RS24395 PF09163 Formate dehydrogenase N, transmembrane CI104_RS24400 PF01292 Prokaryotic cytochrome b561 CI104_RS24405 PF00092 von Willebrand factor type A domain CI104_RS24405 PF12034 Domain of unknown function (DUF3520) CI104_RS24405 PF12450 von Willebrand factor CI104_RS24410 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS24410 PF18698 Histidine kinase sensor domain CI104_RS24410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS24410 PF00672 HAMP domain CI104_RS24410 PF00989 PAS fold CI104_RS24415 PF00072 Response regulator receiver domain CI104_RS24415 PF00486 Transcriptional regulatory protein, C terminal CI104_RS24420 PF04216 Protein involved in formate dehydrogenase formation CI104_RS24435 PF07859 alpha/beta hydrolase fold CI104_RS24440 PF00583 Acetyltransferase (GNAT) family CI104_RS24440 PF09500 Putative thioesterase (yiiD_Cterm) CI104_RS24445 PF02580 D-Tyr-tRNA(Tyr) deacylase CI104_RS24450 PF03631 Virulence factor BrkB CI104_RS24455 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS24460 PF03797 Autotransporter beta-domain CI104_RS24465 PF00455 DeoR C terminal sensor domain CI104_RS24465 PF08220 DeoR-like helix-turn-helix domain CI104_RS24470 PF00294 pfkB family carbohydrate kinase CI104_RS24475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CI104_RS24475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS24480 PF01791 DeoC/LacD family aldolase CI104_RS24490 PF01263 Aldose 1-epimerase CI104_RS24500 PF01055 Glycosyl hydrolases family 31 CI104_RS24515 PF06178 Oligogalacturonate-specific porin protein (KdgM) CI104_RS24520 PF00009 Elongation factor Tu GTP binding domain CI104_RS24520 PF03144 Elongation factor Tu domain 2 CI104_RS24520 PF00679 Elongation factor G C-terminus CI104_RS24530 PF03951 Glutamine synthetase, beta-Grasp domain CI104_RS24530 PF00120 Glutamine synthetase, catalytic domain CI104_RS24535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS24535 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS24535 PF00989 PAS fold CI104_RS24540 PF00072 Response regulator receiver domain CI104_RS24540 PF00158 Sigma-54 interaction domain CI104_RS24540 PF02954 Bacterial regulatory protein, Fis family CI104_RS24550 PF06969 HemN C-terminal domain CI104_RS24550 PF04055 Radical SAM superfamily CI104_RS24555 PF04220 Der GTPase activator (YihI) CI104_RS24565 PF01926 50S ribosome-binding GTPase CI104_RS24570 PF01367 5'-3' exonuclease, C-terminal SAM fold CI104_RS24570 PF01612 3'-5' exonuclease CI104_RS24570 PF00476 DNA polymerase family A CI104_RS24570 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CI104_RS24575 PF01553 Acyltransferase CI104_RS24580 PF01323 DSBA-like thioredoxin domain CI104_RS24585 PF01636 Phosphotransferase enzyme family CI104_RS24590 PF06288 Protein of unknown function (DUF1040) CI104_RS24595 PF12804 MobA-like NTP transferase domain CI104_RS24600 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CI104_RS24630 PF12724 Flavodoxin domain CI104_RS24635 PF02386 Cation transport protein CI104_RS24640 PF09186 Domain of unknown function (DUF1949) CI104_RS24640 PF01205 Uncharacterized protein family UPF0029 CI104_RS24645 PF00557 Metallopeptidase family M24 CI104_RS24650 PF00378 Enoyl-CoA hydratase/isomerase CI104_RS24650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CI104_RS24650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CI104_RS24655 PF00108 Thiolase, N-terminal domain CI104_RS24655 PF02803 Thiolase, C-terminal domain CI104_RS24660 PF00970 Oxidoreductase FAD-binding domain CI104_RS24660 PF00175 Oxidoreductase NAD-binding domain CI104_RS24665 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CI104_RS24670 PF02357 Transcription termination factor nusG CI104_RS24675 PF01026 TatD related DNase CI104_RS24680 PF00902 Sec-independent protein translocase protein (TatC) CI104_RS24690 PF02416 mttA/Hcf106 family CI104_RS24695 PF03109 ABC1 family CI104_RS24700 PF02036 SCP-2 sterol transfer family CI104_RS24705 PF01209 ubiE/COQ5 methyltransferase family CI104_RS24710 PF02646 RmuC family CI104_RS24715 PF01048 Phosphorylase superfamily CI104_RS24720 PF01738 Dienelactone hydrolase family CI104_RS24725 PF01717 Cobalamin-independent synthase, Catalytic domain CI104_RS24725 PF08267 Cobalamin-independent synthase, N-terminal domain CI104_RS24730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS24730 PF03466 LysR substrate binding domain CI104_RS24735 PF00892 EamA-like transporter family CI104_RS24745 PF12146 Serine aminopeptidase, S33 CI104_RS24750 PF01810 LysE type translocator CI104_RS24755 PF01810 LysE type translocator CI104_RS24760 PF00570 HRDC domain CI104_RS24760 PF00271 Helicase conserved C-terminal domain CI104_RS24760 PF00270 DEAD/DEAH box helicase CI104_RS24760 PF16124 RecQ zinc-binding CI104_RS24760 PF09382 RQC domain CI104_RS24765 PF02253 Phospholipase A1 CI104_RS24770 PF03061 Thioesterase superfamily CI104_RS24775 PF00892 EamA-like transporter family CI104_RS24780 PF01544 CorA-like Mg2+ transporter protein CI104_RS24785 PF13361 UvrD-like helicase C-terminal domain CI104_RS24785 PF00580 UvrD/REP helicase N-terminal domain CI104_RS24790 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS24795 PF02899 Phage integrase, N-terminal SAM-like domain CI104_RS24795 PF00589 Phage integrase family CI104_RS24800 PF04340 Protein of unknown function, DUF484 CI104_RS24805 PF01678 Diaminopimelate epimerase CI104_RS24810 PF13627 Prokaryotic lipoprotein-attachment site CI104_RS24815 PF01491 Frataxin-like domain CI104_RS24820 PF12633 Adenylate cyclase NT domain CI104_RS24820 PF01295 Adenylate cyclase, class-I CI104_RS24825 PF03900 Porphobilinogen deaminase, C-terminal domain CI104_RS24825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CI104_RS24830 PF02602 Uroporphyrinogen-III synthase HemD CI104_RS24835 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CI104_RS24840 PF07719 Tetratricopeptide repeat CI104_RS24840 PF07219 HemY protein N-terminus CI104_RS24865 PF00324 Amino acid permease CI104_RS24870 PF03808 Glycosyl transferase WecB/TagA/CpsF family CI104_RS24875 PF06899 WzyE protein, O-antigen assembly polymerase CI104_RS24880 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CI104_RS24885 PF01943 Polysaccharide biosynthesis protein CI104_RS24890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CI104_RS24900 PF00483 Nucleotidyl transferase CI104_RS24905 PF16363 GDP-mannose 4,6 dehydratase CI104_RS24910 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CI104_RS24910 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CI104_RS24910 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CI104_RS24915 PF02350 UDP-N-acetylglucosamine 2-epimerase CI104_RS24920 PF02706 Chain length determinant protein CI104_RS24925 PF00953 Glycosyl transferase family 4 CI104_RS24930 PF07497 Rho termination factor, RNA-binding domain CI104_RS24930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CI104_RS24930 PF07498 Rho termination factor, N-terminal domain CI104_RS24940 PF00085 Thioredoxin CI104_RS24945 PF00271 Helicase conserved C-terminal domain CI104_RS24945 PF00270 DEAD/DEAH box helicase CI104_RS24950 PF02541 Ppx/GppA phosphatase family CI104_RS24955 PF00580 UvrD/REP helicase N-terminal domain CI104_RS24955 PF13361 UvrD-like helicase C-terminal domain CI104_RS24960 PF04973 Nicotinamide mononucleotide transporter CI104_RS24965 PF01048 Phosphorylase superfamily CI104_RS24980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CI104_RS24980 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CI104_RS24985 PF03466 LysR substrate binding domain CI104_RS24985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS24995 PF00585 C-terminal regulatory domain of Threonine dehydratase CI104_RS24995 PF00291 Pyridoxal-phosphate dependent enzyme CI104_RS25000 PF00920 Dehydratase family CI104_RS25005 PF01063 Amino-transferase class IV CI104_RS25015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CI104_RS25015 PF00205 Thiamine pyrophosphate enzyme, central domain CI104_RS25015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CI104_RS25020 PF08046 IlvGEDA operon leader peptide CI104_RS25025 PF01078 Magnesium chelatase, subunit ChlI CI104_RS25025 PF13335 Magnesium chelatase, subunit ChlI C-terminal CI104_RS25030 PF04219 Protein of unknown function, DUF CI104_RS25035 PF03466 LysR substrate binding domain CI104_RS25035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS25070 PF00392 Bacterial regulatory proteins, gntR family CI104_RS25070 PF07729 FCD domain CI104_RS25075 PF07690 Major Facilitator Superfamily CI104_RS25080 PF00356 Bacterial regulatory proteins, lacI family CI104_RS25085 PF00294 pfkB family carbohydrate kinase CI104_RS25090 PF13407 Periplasmic binding protein domain CI104_RS25095 PF02653 Branched-chain amino acid transport system / permease component CI104_RS25100 PF00005 ABC transporter CI104_RS25105 PF05025 RbsD / FucU transport protein family CI104_RS25110 PF02705 K+ potassium transporter CI104_RS25115 PF12592 Protein of unknown function (DUF3763) CI104_RS25115 PF17868 AAA lid domain CI104_RS25115 PF07728 AAA domain (dynein-related subfamily) CI104_RS25120 PF05762 VWA domain containing CoxE-like protein CI104_RS25125 PF03590 Aspartate-ammonia ligase CI104_RS25130 PF01037 Lrp/AsnC ligand binding domain CI104_RS25135 PF00258 Flavodoxin CI104_RS25140 PF01134 Glucose inhibited division protein A CI104_RS25140 PF13932 GidA associated domain CI104_RS25145 PF02527 rRNA small subunit methyltransferase G CI104_RS25150 PF03899 ATP synthase I chain CI104_RS25155 PF00119 ATP synthase A chain CI104_RS25160 PF00137 ATP synthase subunit C CI104_RS25165 PF00430 ATP synthase B/B' CF(0) CI104_RS25170 PF00213 ATP synthase delta (OSCP) subunit CI104_RS25175 PF02874 ATP synthase alpha/beta family, beta-barrel domain CI104_RS25175 PF00306 ATP synthase alpha/beta chain, C terminal domain CI104_RS25175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CI104_RS25180 PF00231 ATP synthase CI104_RS25185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CI104_RS25185 PF02874 ATP synthase alpha/beta family, beta-barrel domain CI104_RS25190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CI104_RS25190 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CI104_RS25195 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS25195 PF14602 Hexapeptide repeat of succinyl-transferase CI104_RS25195 PF12804 MobA-like NTP transferase domain CI104_RS25200 PF01380 SIS domain CI104_RS25205 PF12849 PBP superfamily domain CI104_RS25210 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS25215 PF00528 Binding-protein-dependent transport system inner membrane component CI104_RS25220 PF00005 ABC transporter CI104_RS25225 PF01895 PhoU domain CI104_RS25230 PF13419 Haloacid dehalogenase-like hydrolase CI104_RS25235 PF00860 Permease family CI104_RS25240 PF03358 NADPH-dependent FMN reductase CI104_RS25250 PF03222 Tryptophan/tyrosine permease family CI104_RS25255 PF01212 Beta-eliminating lyase CI104_RS25265 PF12631 MnmE helical domain CI104_RS25265 PF10396 GTP-binding protein TrmE N-terminus CI104_RS25265 PF01926 50S ribosome-binding GTPase CI104_RS25270 PF02096 60Kd inner membrane protein CI104_RS25270 PF14849 YidC periplasmic domain CI104_RS25275 PF01809 Putative membrane protein insertion efficiency factor CI104_RS25280 PF00825 Ribonuclease P CI104_RS25285 PF00468 Ribosomal protein L34 CI104_RS25290 PF01051 Initiator Replication protein CI104_RS25350 PF13614 AAA domain CI104_RS25380 PF06406 StbA protein CI104_RS25390 PF13737 Transposase DDE domain CI104_RS25415 PF10502 Signal peptidase, peptidase S26 CI104_RS25425 PF06834 TraU protein CI104_RS25440 PF13361 UvrD-like helicase C-terminal domain CI104_RS25440 PF00580 UvrD/REP helicase N-terminal domain CI104_RS25560 PF05321 Haemolysin expression modulating protein CI104_RS25580 PF00589 Phage integrase family CI104_RS25580 PF13495 Phage integrase, N-terminal SAM-like domain CI104_RS25590 PF01695 IstB-like ATP binding protein CI104_RS25595 PF00665 Integrase core domain CI104_RS25610 PF00239 Resolvase, N terminal domain CI104_RS25610 PF02796 Helix-turn-helix domain of resolvase CI104_RS25620 PF13495 Phage integrase, N-terminal SAM-like domain CI104_RS25620 PF00589 Phage integrase family CI104_RS25625 PF13427 Domain of unknown function (DUF4111) CI104_RS25630 PF00893 Small Multidrug Resistance protein CI104_RS25635 PF00809 Pterin binding enzyme CI104_RS25655 PF13610 DDE domain CI104_RS25665 PF13599 Pentapeptide repeats (9 copies) CI104_RS25670 PF03466 LysR substrate binding domain CI104_RS25670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS25675 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CI104_RS25680 PF00893 Small Multidrug Resistance protein CI104_RS25685 PF00809 Pterin binding enzyme CI104_RS25695 PF13599 Pentapeptide repeats (9 copies) CI104_RS25700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CI104_RS25700 PF03466 LysR substrate binding domain CI104_RS25705 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CI104_RS25710 PF00893 Small Multidrug Resistance protein CI104_RS25715 PF00809 Pterin binding enzyme CI104_RS25725 PF03120 NAD-dependent DNA ligase OB-fold domain CI104_RS25725 PF01653 NAD-dependent DNA ligase adenylation domain CI104_RS25725 PF00533 BRCA1 C Terminus (BRCT) domain CI104_RS25725 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CI104_RS25725 PF12826 Helix-hairpin-helix motif CI104_RS25740 PF00589 Phage integrase family CI104_RS25740 PF13495 Phage integrase, N-terminal SAM-like domain CI104_RS25745 PF01636 Phosphotransferase enzyme family CI104_RS25750 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CI104_RS25775 PF00440 Bacterial regulatory proteins, tetR family CI104_RS25775 PF02909 Tetracyclin repressor-like, C-terminal domain CI104_RS25780 PF07690 Major Facilitator Superfamily CI104_RS25785 PF00107 Zinc-binding dehydrogenase CI104_RS25785 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS25790 PF00756 Putative esterase CI104_RS25880 PF02371 Transposase IS116/IS110/IS902 family CI104_RS25880 PF01548 Transposase CI104_RS25895 PF16916 Dimerisation domain of Zinc Transporter CI104_RS25895 PF01545 Cation efflux family CI104_RS25905 PF04221 RelB antitoxin CI104_RS25910 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CI104_RS25915 PF01848 Hok/gef family CI104_RS26000 PF08378 Nuclease-related domain CI104_RS26070 PF05638 Type VI secretion system effector, Hcp CI104_RS26085 PF13098 Thioredoxin-like domain CI104_RS26085 PF10411 Disulfide bond isomerase protein N-terminus CI104_RS26105 PF06965 Na+/H+ antiporter 1 CI104_RS26105 PF13462 Thioredoxin CI104_RS26110 PF13438 Domain of unknown function (DUF4113) CI104_RS26110 PF00817 impB/mucB/samB family CI104_RS26110 PF11799 impB/mucB/samB family C-terminal domain CI104_RS26115 PF00717 Peptidase S24-like CI104_RS26175 PF13737 Transposase DDE domain CI104_RS26185 PF03358 NADPH-dependent FMN reductase CI104_RS26190 PF01022 Bacterial regulatory protein, arsR family CI104_RS26195 PF02040 Arsenical pump membrane protein CI104_RS26200 PF03960 ArsC family CI104_RS26205 PF00582 Universal stress protein family CI104_RS26210 PF01740 STAS domain CI104_RS26210 PF00916 Sulfate permease family CI104_RS26255 PF00565 Staphylococcal nuclease homologue CI104_RS26260 PF18284 DNA methylase N-terminal domain CI104_RS26260 PF00145 C-5 cytosine-specific DNA methylase CI104_RS26290 PF02583 Metal-sensitive transcriptional repressor CI104_RS26295 PF03824 High-affinity nickel-transport protein CI104_RS26305 PF00512 His Kinase A (phospho-acceptor) domain CI104_RS26305 PF00672 HAMP domain CI104_RS26305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CI104_RS26310 PF13737 Transposase DDE domain CI104_RS26315 PF08019 Phosphoethanolamine transferase EptA/EptB CI104_RS26315 PF00884 Sulfatase CI104_RS26340 PF02322 Cytochrome bd terminal oxidase subunit II CI104_RS26350 PF00465 Iron-containing alcohol dehydrogenase CI104_RS26355 PF02583 Metal-sensitive transcriptional repressor CI104_RS26365 PF17755 UvrA DNA-binding domain CI104_RS26370 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS26375 PF00756 Putative esterase CI104_RS26390 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS26390 PF00107 Zinc-binding dehydrogenase CI104_RS26395 PF02583 Metal-sensitive transcriptional repressor CI104_RS26400 PF02151 UvrB/uvrC motif CI104_RS26400 PF12344 Ultra-violet resistance protein B CI104_RS26400 PF04851 Type III restriction enzyme, res subunit CI104_RS26400 PF00271 Helicase conserved C-terminal domain CI104_RS26400 PF17757 UvrB interaction domain CI104_RS26405 PF05247 Flagellar transcriptional activator (FlhD) CI104_RS26410 PF13302 Acetyltransferase (GNAT) domain CI104_RS26420 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CI104_RS26450 PF13614 AAA domain CI104_RS26480 PF00589 Phage integrase family CI104_RS26510 PF01526 Tn3 transposase DDE domain CI104_RS26510 PF13700 Domain of unknown function (DUF4158) CI104_RS26515 PF02796 Helix-turn-helix domain of resolvase CI104_RS26515 PF00239 Resolvase, N terminal domain CI104_RS26550 PF00816 H-NS histone family CI104_RS26585 PF00376 MerR family regulatory protein CI104_RS26585 PF09278 MerR, DNA binding CI104_RS26590 PF02411 MerT mercuric transport protein CI104_RS26595 PF00403 Heavy-metal-associated domain CI104_RS26600 PF03203 MerC mercury resistance protein CI104_RS26605 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS26605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CI104_RS26605 PF00403 Heavy-metal-associated domain CI104_RS26610 PF13411 MerR HTH family regulatory protein CI104_RS26615 PF05052 MerE protein CI104_RS26625 PF11809 Domain of unknown function (DUF3330) CI104_RS26625 PF00563 EAL domain CI104_RS26630 PF01252 Signal peptidase (SPase) II CI104_RS26635 PF00403 Heavy-metal-associated domain CI104_RS26640 PF13411 MerR HTH family regulatory protein CI104_RS26645 PF02371 Transposase IS116/IS110/IS902 family CI104_RS26645 PF01548 Transposase CI104_RS26665 PF13657 HipA N-terminal domain CI104_RS26665 PF07804 HipA-like C-terminal domain CI104_RS26705 PF00580 UvrD/REP helicase N-terminal domain CI104_RS26705 PF13361 UvrD-like helicase C-terminal domain CI104_RS26720 PF13610 DDE domain CI104_RS26740 PF01636 Phosphotransferase enzyme family CI104_RS26755 PF02522 Aminoglycoside 3-N-acetyltransferase CI104_RS26790 PF01548 Transposase CI104_RS26790 PF02371 Transposase IS116/IS110/IS902 family CI104_RS26795 PF13700 Domain of unknown function (DUF4158) CI104_RS26795 PF01526 Tn3 transposase DDE domain CI104_RS26800 PF00239 Resolvase, N terminal domain CI104_RS26800 PF02796 Helix-turn-helix domain of resolvase CI104_RS26820 PF03551 Transcriptional regulator PadR-like family CI104_RS26840 PF00809 Pterin binding enzyme CI104_RS26845 PF00893 Small Multidrug Resistance protein CI104_RS26855 PF00132 Bacterial transferase hexapeptide (six repeats) CI104_RS26860 PF00905 Penicillin binding protein transpeptidase domain CI104_RS26870 PF13495 Phage integrase, N-terminal SAM-like domain CI104_RS26870 PF00589 Phage integrase family CI104_RS26895 PF08220 DeoR-like helix-turn-helix domain CI104_RS26895 PF00455 DeoR C terminal sensor domain CI104_RS26905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CI104_RS26905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CI104_RS26915 PF00596 Class II Aldolase and Adducin N-terminal domain CI104_RS26930 PF00302 Chloramphenicol acetyltransferase CI104_RS26975 PF13737 Transposase DDE domain CI104_RS27080 PF17827 PrmC N-terminal domain CI104_RS27080 PF05175 Methyltransferase small domain CI104_RS27105 PF01051 Initiator Replication protein CI104_RS27145 PF02086 D12 class N6 adenine-specific DNA methyltransferase CI104_RS27170 PF01051 Initiator Replication protein CI104_RS27175 PF00589 Phage integrase family CI104_RS27185 PF12759 InsA C-terminal domain CI104_RS27185 PF03811 InsA N-terminal domain CI104_RS27190 PF02371 Transposase IS116/IS110/IS902 family CI104_RS27190 PF01548 Transposase CI104_RS27195 PF01740 STAS domain CI104_RS27195 PF00916 Sulfate permease family CI104_RS27200 PF00582 Universal stress protein family CI104_RS27220 PF04542 Sigma-70 region 2 CI104_RS27220 PF04545 Sigma-70, region 4 CI104_RS27230 PF01548 Transposase CI104_RS27230 PF02371 Transposase IS116/IS110/IS902 family CI104_RS27240 PF00005 ABC transporter CI104_RS27250 PF13533 Biotin-lipoyl like CI104_RS27255 PF00440 Bacterial regulatory proteins, tetR family CI104_RS27260 PF02371 Transposase IS116/IS110/IS902 family CI104_RS27260 PF01548 Transposase CI104_RS27275 PF01609 Transposase DDE domain CI104_RS27275 PF05598 Transposase domain (DUF772) CI104_RS27280 PF00440 Bacterial regulatory proteins, tetR family CI104_RS27285 PF02837 Glycosyl hydrolases family 2, sugar binding domain CI104_RS27285 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CI104_RS27285 PF00703 Glycosyl hydrolases family 2 CI104_RS27295 PF03573 outer membrane porin, OprD family CI104_RS27300 PF03786 D-mannonate dehydratase (UxuA) CI104_RS27305 PF01232 Mannitol dehydrogenase Rossmann domain CI104_RS27305 PF08125 Mannitol dehydrogenase C-terminal domain CI104_RS27310 PF02614 Glucuronate isomerase CI104_RS27315 PF00392 Bacterial regulatory proteins, gntR family CI104_RS27315 PF07729 FCD domain CI104_RS27320 PF13005 zinc-finger binding domain of transposase IS66 CI104_RS27320 PF13007 Transposase C of IS166 homeodomain CI104_RS27320 PF13817 IS66 C-terminal element CI104_RS27320 PF03050 Transposase IS66 family CI104_RS27325 PF01526 Tn3 transposase DDE domain CI104_RS27325 PF13700 Domain of unknown function (DUF4158) CI104_RS27340 PF02796 Helix-turn-helix domain of resolvase CI104_RS27340 PF00239 Resolvase, N terminal domain CI104_RS27345 PF01526 Tn3 transposase DDE domain CI104_RS27345 PF13700 Domain of unknown function (DUF4158) CI104_RS27350 PF01548 Transposase CI104_RS27350 PF02371 Transposase IS116/IS110/IS902 family CI104_RS27365 PF00809 Pterin binding enzyme CI104_RS27370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CI104_RS27370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CI104_RS27370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CI104_RS27370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CI104_RS27390 PF00239 Resolvase, N terminal domain CI104_RS27390 PF02796 Helix-turn-helix domain of resolvase CI104_RS27410 PF00302 Chloramphenicol acetyltransferase CI104_RS27425 PF02909 Tetracyclin repressor-like, C-terminal domain CI104_RS27425 PF00440 Bacterial regulatory proteins, tetR family CI104_RS27430 PF07690 Major Facilitator Superfamily CI104_RS27435 PF08240 Alcohol dehydrogenase GroES-like domain CI104_RS27435 PF00107 Zinc-binding dehydrogenase CI104_RS27440 PF00756 Putative esterase CI104_RS27450 PF01526 Tn3 transposase DDE domain CI104_RS27450 PF13700 Domain of unknown function (DUF4158) CI104_RS27455 PF00005 ABC transporter CI104_RS27455 PF03412 Peptidase C39 family CI104_RS27455 PF00664 ABC transporter transmembrane region CI104_RS27460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CI104_RS27460 PF00529 HlyD membrane-fusion protein of T1SS CI104_RS27490 PF00239 Resolvase, N terminal domain CI104_RS27490 PF02796 Helix-turn-helix domain of resolvase CI104_RS27495 PF13700 Domain of unknown function (DUF4158) CI104_RS27495 PF01526 Tn3 transposase DDE domain CI104_RS27500 PF01609 Transposase DDE domain CI104_RS27500 PF05598 Transposase domain (DUF772) CI104_RS27505 PF00239 Resolvase, N terminal domain CI104_RS27505 PF02796 Helix-turn-helix domain of resolvase CI104_RS27510 PF13700 Domain of unknown function (DUF4158) CI104_RS27510 PF01526 Tn3 transposase DDE domain CI104_RS27525 PF05598 Transposase domain (DUF772) CI104_RS27525 PF01609 Transposase DDE domain CI104_RS27540 PF04754 Putative transposase, YhgA-like CI104_RS27560 PF13817 IS66 C-terminal element CI104_RS27560 PF03050 Transposase IS66 family CI104_RS27560 PF13005 zinc-finger binding domain of transposase IS66 CI104_RS27560 PF13007 Transposase C of IS166 homeodomain CI104_RS27565 PF05717 IS66 Orf2 like protein CI104_RS27575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CI104_RS27575 PF00672 HAMP domain CI104_RS27575 PF02203 Tar ligand binding domain homologue CI104_RS27590 PF12759 InsA C-terminal domain CI104_RS27590 PF03811 InsA N-terminal domain CI104_RS27610 PF02387 IncFII RepA protein family CI104_RS27625 PF10723 Replication regulatory protein RepB CI104_RS27635 PF13462 Thioredoxin CI104_RS27635 PF06965 Na+/H+ antiporter 1 CI104_RS27645 PF05857 TraX protein CI104_RS27650 PF18272 single-stranded DNA binding TraI N-terminal subdomain CI104_RS27650 PF18340 DNA relaxase TraI 2B/2B-like domain CI104_RS27650 PF08751 TrwC relaxase CI104_RS27650 PF07057 DNA helicase TraI CI104_RS27655 PF12615 F sex factor protein N terminal CI104_RS27655 PF10412 Type IV secretion-system coupling protein DNA-binding domain CI104_RS27665 PF13592 Winged helix-turn helix CI104_RS27665 PF13358 DDE superfamily endonuclease CI104_RS27675 PF07916 TraG-like protein, N-terminal region CI104_RS27680 PF06122 Conjugative relaxosome accessory transposon protein CI104_RS27690 PF13728 F plasmid transfer operon protein CI104_RS27695 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) CI104_RS27700 PF13728 F plasmid transfer operon protein CI104_RS27710 PF06986 Type-1V conjugative transfer system mating pair stabilisation CI104_RS27715 PF09673 Type-F conjugative transfer system pilin assembly protein CI104_RS27720 PF06834 TraU protein CI104_RS27725 PF12477 Sex factor F TraW protein N terminal CI104_RS27730 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) CI104_RS27735 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer CI104_RS27760 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CI104_RS27765 PF03743 Bacterial conjugation TrbI-like protein CI104_RS27770 PF06586 TraK protein CI104_RS27775 PF05309 TraE protein CI104_RS27780 PF07178 TraL protein CI104_RS27785 PF05513 TraA CI104_RS27790 PF05509 TraY domain CI104_RS27795 PF00989 PAS fold CI104_RS27800 PF05261 TraM protein, DNA-binding CI104_RS27805 PF01464 Transglycosylase SLT domain CI104_RS27810 PF03230 Antirestriction protein CI104_RS27850 PF06952 PsiA protein CI104_RS27855 PF06290 Plasmid SOS inhibition protein (PsiB) CI104_RS27860 PF02195 ParB-like nuclease domain CI104_RS27865 PF06006 Bacterial protein of unknown function (DUF905) CI104_RS27880 PF06440 DNA polymerase III, theta subunit CI104_RS27900 PF07128 Protein of unknown function (DUF1380) CI104_RS27910 PF01555 DNA methylase CI104_RS27915 PF02586 SOS response associated peptidase (SRAP) CI104_RS27920 PF00717 Peptidase S24-like CI104_RS27925 PF11799 impB/mucB/samB family C-terminal domain CI104_RS27925 PF00817 impB/mucB/samB family CI104_RS27925 PF13438 Domain of unknown function (DUF4113) CI104_RS27940 PF09217 Restriction endonuclease EcoRII, N-terminal CI104_RS27940 PF09019 EcoRII C terminal CI104_RS27945 PF18284 DNA methylase N-terminal domain CI104_RS27945 PF00145 C-5 cytosine-specific DNA methylase CI104_RS27950 PF00005 ABC transporter CI104_RS27955 PF00817 impB/mucB/samB family CI104_RS27955 PF11799 impB/mucB/samB family C-terminal domain CI104_RS27955 PF13438 Domain of unknown function (DUF4113) CI104_RS27965 PF18090 Centromere-binding protein HTH domain CI104_RS27965 PF02195 ParB-like nuclease domain CI104_RS27970 PF13614 AAA domain CI104_RS27975 PF01527 Transposase CI104_RS27985 PF13817 IS66 C-terminal element CI104_RS27985 PF13005 zinc-finger binding domain of transposase IS66 CI104_RS27985 PF13007 Transposase C of IS166 homeodomain CI104_RS27985 PF03050 Transposase IS66 family CI104_RS27990 PF05717 IS66 Orf2 like protein CI104_RS28000 PF13936 Helix-turn-helix domain CI104_RS28000 PF00665 Integrase core domain CI104_RS28005 PF01527 Transposase CI104_RS28010 PF00665 Integrase core domain CI104_RS28010 PF13333 Integrase core domain CI104_RS28010 PF13276 HTH-like domain CI104_RS28015 PF01609 Transposase DDE domain CI104_RS28015 PF05598 Transposase domain (DUF772) CI104_RS28035 PF01051 Initiator Replication protein CI104_RS28045 PF18607 ParA helix turn helix domain CI104_RS28045 PF13614 AAA domain CI104_RS28050 PF08775 ParB family CI104_RS28050 PF02195 ParB-like nuclease domain CI104_RS28055 PF13438 Domain of unknown function (DUF4113) CI104_RS28055 PF11799 impB/mucB/samB family C-terminal domain CI104_RS28055 PF00817 impB/mucB/samB family CI104_RS28060 PF00717 Peptidase S24-like CI104_RS28065 PF06406 StbA protein CI104_RS28085 PF01555 DNA methylase CI104_RS28095 PF07128 Protein of unknown function (DUF1380) CI104_RS28105 PF03230 Antirestriction protein CI104_RS28120 PF06440 DNA polymerase III, theta subunit CI104_RS28175 PF00436 Single-strand binding protein family CI104_RS28180 PF06006 Bacterial protein of unknown function (DUF905) CI104_RS28185 PF02195 ParB-like nuclease domain CI104_RS28190 PF06290 Plasmid SOS inhibition protein (PsiB) CI104_RS28265 PF06067 Domain of unknown function (DUF932) CI104_RS28275 PF01464 Transglycosylase SLT domain CI104_RS28280 PF05261 TraM protein, DNA-binding CI104_RS28290 PF05509 TraY domain CI104_RS28295 PF05513 TraA CI104_RS28300 PF07178 TraL protein CI104_RS28305 PF05309 TraE protein CI104_RS28310 PF06586 TraK protein CI104_RS28315 PF03743 Bacterial conjugation TrbI-like protein CI104_RS28320 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CI104_RS28355 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer CI104_RS28360 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) CI104_RS28365 PF12477 Sex factor F TraW protein N terminal CI104_RS28375 PF06834 TraU protein CI104_RS28380 PF09673 Type-F conjugative transfer system pilin assembly protein CI104_RS28385 PF06986 Type-1V conjugative transfer system mating pair stabilisation CI104_RS28390 PF11100 Conjugal transfer protein TrbE CI104_RS28405 PF13728 F plasmid transfer operon protein CI104_RS28410 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) CI104_RS28415 PF13728 F plasmid transfer operon protein CI104_RS28425 PF06122 Conjugative relaxosome accessory transposon protein CI104_RS28430 PF07916 TraG-like protein, N-terminal region CI104_RS28440 PF05818 Enterobacterial TraT complement resistance protein CI104_RS28455 PF10412 Type IV secretion-system coupling protein DNA-binding domain CI104_RS28455 PF12615 F sex factor protein N terminal CI104_RS28460 PF18272 single-stranded DNA binding TraI N-terminal subdomain CI104_RS28460 PF08751 TrwC relaxase CI104_RS28460 PF07057 DNA helicase TraI CI104_RS28460 PF18340 DNA relaxase TraI 2B/2B-like domain CI104_RS28465 PF05857 TraX protein CI104_RS28470 PF04352 ProQ/FINO family CI104_RS28470 PF12602 Fertility inhibition protein N terminal CI104_RS28500 PF10723 Replication regulatory protein RepB CI104_RS28515 PF02387 IncFII RepA protein family CI104_RS28545 PF00589 Phage integrase family CI104_RS28545 PF02899 Phage integrase, N-terminal SAM-like domain CI104_RS28555 PF00665 Integrase core domain CI104_RS28555 PF02796 Helix-turn-helix domain of resolvase CI104_RS28560 PF01695 IstB-like ATP binding protein CI104_RS28580 PF01609 Transposase DDE domain CI104_RS28580 PF13808 DDE_Tnp_1-associated CI104_RS28585 PF13737 Transposase DDE domain CI104_RS28600 PF02796 Helix-turn-helix domain of resolvase CI104_RS28600 PF00239 Resolvase, N terminal domain CI104_RS28605 PF13700 Domain of unknown function (DUF4158) CI104_RS28605 PF01526 Tn3 transposase DDE domain CI104_RS28620 PF00239 Resolvase, N terminal domain CI104_RS28620 PF02796 Helix-turn-helix domain of resolvase CI104_RS28645 PF13188 PAS domain CI104_RS28645 PF00990 Diguanylate cyclase, GGDEF domain CI104_RS28645 PF00563 EAL domain CI104_RS28645 PF03707 Bacterial signalling protein N terminal repeat CI104_RS28650 PF05052 MerE protein CI104_RS28655 PF13411 MerR HTH family regulatory protein CI104_RS28660 PF07992 Pyridine nucleotide-disulphide oxidoreductase CI104_RS28660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CI104_RS28660 PF00403 Heavy-metal-associated domain CI104_RS28665 PF03203 MerC mercury resistance protein CI104_RS28670 PF00403 Heavy-metal-associated domain CI104_RS28680 PF02463 RecF/RecN/SMC N terminal domain CI104_RS28685 PF01850 PIN domain CI104_RS28690 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CI104_RS28725 PF00589 Phage integrase family