AM348_RS01435 74099aee8700383ab44f647da9fac865 282 PIRSF PIRSF000903 1 274 7.8E-125 T 28-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AM348_RS01435 74099aee8700383ab44f647da9fac865 282 Gene3D G3DSA:3.60.21.10 1 278 6.6E-46 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS01435 74099aee8700383ab44f647da9fac865 282 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 277 3.7E-164 T 28-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AM348_RS01435 74099aee8700383ab44f647da9fac865 282 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 52.147 T 28-03-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 AM348_RS01435 74099aee8700383ab44f647da9fac865 282 Pfam PF00149 Calcineurin-like phosphoesterase 4 139 1.4E-13 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS01435 74099aee8700383ab44f647da9fac865 282 SUPERFAMILY SSF56300 1 260 1.27E-56 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 25 412 2.9E-129 T 28-03-2018 IPR013355 Type IV pilus secretin PilQ AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 Pfam PF03958 Bacterial type II/III secretion system short domain 123 183 1.2E-8 T 28-03-2018 IPR005644 NolW-like AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 249 273 2.3E-12 T 28-03-2018 IPR001775 GspD/PilQ family AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 400 414 2.3E-12 T 28-03-2018 IPR001775 GspD/PilQ family AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 377 395 2.3E-12 T 28-03-2018 IPR001775 GspD/PilQ family AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 Pfam PF00263 Bacterial type II and III secretion system protein 253 412 9.7E-46 T 28-03-2018 IPR004846 Type II/III secretion system GO:0009306 AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 SMART SM00965 49 97 0.0042 T 28-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 PRINTS PR01032 Gene IV protein signature 274 297 8.6E-9 T 28-03-2018 AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 PRINTS PR01032 Gene IV protein signature 340 368 8.6E-9 T 28-03-2018 AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 PRINTS PR01032 Gene IV protein signature 233 256 8.6E-9 T 28-03-2018 AM348_RS07075 6255ce714fa6e69c15765b29da1834c4 415 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 358 391 - T 28-03-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 AM348_RS11070 a71881ebcabf64b51941d3c6e27ea35a 82 Gene3D G3DSA:3.30.1320.10 1 79 5.6E-33 T 28-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11070 a71881ebcabf64b51941d3c6e27ea35a 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 28-03-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS11070 a71881ebcabf64b51941d3c6e27ea35a 82 Pfam PF00886 Ribosomal protein S16 8 68 3.3E-24 T 28-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11070 a71881ebcabf64b51941d3c6e27ea35a 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.01 T 28-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11070 a71881ebcabf64b51941d3c6e27ea35a 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 2.0E-28 T 28-03-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11070 a71881ebcabf64b51941d3c6e27ea35a 82 SUPERFAMILY SSF54565 1 76 7.19E-29 T 28-03-2018 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 SUPERFAMILY SSF55781 2 159 8.51E-30 T 28-03-2018 IPR029016 GAF domain-like AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 SUPERFAMILY SSF52009 293 413 2.75E-24 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 SMART SM00065 17 164 5.7E-29 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 9.3E-15 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Gene3D G3DSA:1.10.274.10 195 302 4.4E-28 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Gene3D G3DSA:3.30.450.40 1 173 1.1E-28 T 28-03-2018 IPR029016 GAF domain-like AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 2.4E-24 T 28-03-2018 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 2.4E-24 T 28-03-2018 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 2.4E-24 T 28-03-2018 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 2.4E-24 T 28-03-2018 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 7.7E-23 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 SUPERFAMILY SSF51621 420 715 7.33E-96 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Gene3D G3DSA:3.20.20.60 420 739 3.2E-85 T 28-03-2018 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 28-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Gene3D G3DSA:3.50.30.10 303 419 1.2E-17 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 28-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Pfam PF01590 GAF domain 18 152 6.5E-15 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 420 707 8.4E-108 T 28-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 175 729 2.1E-124 T 28-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AM348_RS09750 2092cca52b3e1c460b09b45cc5df6ee4 748 SUPERFAMILY SSF47831 198 309 1.29E-25 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.1E-41 T 28-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.6E-100 T 28-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 Pfam PF07650 KH domain 38 111 1.1E-18 T 28-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 Gene3D G3DSA:3.30.300.20 17 107 9.1E-28 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 28-03-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 SMART SM00322 60 125 1.6E-6 T 28-03-2018 IPR004087 K Homology domain GO:0003676 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 SUPERFAMILY SSF54814 2 106 1.6E-37 T 28-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.15 T 28-03-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 Gene3D G3DSA:3.30.1140.32 108 207 3.4E-40 T 28-03-2018 AM348_RS07370 015d00c9b7f7f2897a9ebd700c9a9d69 233 SUPERFAMILY SSF54821 108 206 6.93E-41 T 28-03-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 10 302 39.795 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 PIRSF PIRSF001438 1 316 7.5E-123 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 SUPERFAMILY SSF54782 225 313 1.57E-28 T 28-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 11 217 3.7E-78 T 28-03-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 Gene3D G3DSA:3.40.190.10 112 204 6.4E-38 T 28-03-2018 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 Gene3D G3DSA:3.40.190.10 3 111 8.1E-44 T 28-03-2018 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 PRINTS PR00151 Porphobilinogen deaminase signature 129 146 1.2E-49 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 PRINTS PR00151 Porphobilinogen deaminase signature 81 100 1.2E-49 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 PRINTS PR00151 Porphobilinogen deaminase signature 50 70 1.2E-49 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 PRINTS PR00151 Porphobilinogen deaminase signature 148 165 1.2E-49 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 PRINTS PR00151 Porphobilinogen deaminase signature 235 252 1.2E-49 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 Gene3D G3DSA:3.30.160.40 226 311 1.2E-25 T 28-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 236 252 - T 28-03-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 231 300 4.2E-23 T 28-03-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 11 302 1.7E-112 T 28-03-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04935 5f6a220c909cf9914331e0b1b5f6770a 318 SUPERFAMILY SSF53850 10 224 1.63E-84 T 28-03-2018 AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 ProSitePatterns PS01228 Hypothetical cof family signature 1. 2 13 - T 28-03-2018 AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 Pfam PF08282 haloacid dehalogenase-like hydrolase 3 261 9.0E-52 T 28-03-2018 IPR023214 HAD-like domain AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 28-03-2018 AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 2 235 1.6E-24 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 Gene3D G3DSA:3.40.50.1000 1 277 9.9E-33 T 28-03-2018 IPR023214 HAD-like domain AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 2 261 1.3E-47 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS03695 b22079c2ecc68a969a90d729c356b2a1 287 SUPERFAMILY SSF56784 2 263 6.62E-56 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04455 8c281814f587d0926fb532234ba28712 382 SUPERFAMILY SSF56796 3 380 1.83E-125 T 28-03-2018 AM348_RS04455 8c281814f587d0926fb532234ba28712 382 Gene3D G3DSA:1.20.1090.10 183 382 1.0E-67 T 28-03-2018 AM348_RS04455 8c281814f587d0926fb532234ba28712 382 Gene3D G3DSA:3.40.50.1970 8 182 1.1E-42 T 28-03-2018 AM348_RS04455 8c281814f587d0926fb532234ba28712 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS04455 8c281814f587d0926fb532234ba28712 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS04455 8c281814f587d0926fb532234ba28712 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 378 3.3E-180 T 28-03-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 AM348_RS04455 8c281814f587d0926fb532234ba28712 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 374 9.4E-121 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS06655 dcc4d1894f57360d43036e6a13f8ef73 271 SUPERFAMILY SSF69593 29 244 7.59E-25 T 28-03-2018 AM348_RS06655 dcc4d1894f57360d43036e6a13f8ef73 271 Gene3D G3DSA:3.40.1130.10 41 263 5.0E-27 T 28-03-2018 AM348_RS06655 dcc4d1894f57360d43036e6a13f8ef73 271 Pfam PF01553 Acyltransferase 77 198 2.0E-18 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS06655 dcc4d1894f57360d43036e6a13f8ef73 271 SMART SM00563 90 200 2.5E-16 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS08995 afd23fc8aadc23b47d270fd142b09a84 567 SUPERFAMILY SSF56762 1 552 5.23E-167 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS08995 afd23fc8aadc23b47d270fd142b09a84 567 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 28-03-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 AM348_RS08995 afd23fc8aadc23b47d270fd142b09a84 567 Gene3D G3DSA:1.10.645.10 1 552 5.9E-180 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS08995 afd23fc8aadc23b47d270fd142b09a84 567 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 543 552 - T 28-03-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 AM348_RS08995 afd23fc8aadc23b47d270fd142b09a84 567 Pfam PF00374 Nickel-dependent hydrogenase 39 552 1.9E-205 T 28-03-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 SUPERFAMILY SSF55307 203 319 7.33E-43 T 28-03-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 SMART SM00865 206 324 3.4E-56 T 28-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 338 8.4E-142 T 28-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 8.1E-42 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 Gene3D G3DSA:3.40.50.1440 8 213 1.6E-42 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 Pfam PF12327 FtsZ family, C-terminal domain 221 315 2.4E-37 T 28-03-2018 IPR024757 Cell division protein FtsZ, C-terminal AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 Gene3D G3DSA:3.30.1330.20 214 324 1.0E-44 T 28-03-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-3371497|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-8955332|Reactome: R-HSA-983189 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 28-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 SUPERFAMILY SSF52490 12 207 2.09E-69 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 343 38.192 T 28-03-2018 IPR000158 Cell division protein FtsZ GO:0005525 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 SMART SM00864 12 204 6.3E-111 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 28-03-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 PRINTS PR00423 Cell division protein FtsZ signature 188 210 2.5E-52 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 PRINTS PR00423 Cell division protein FtsZ signature 97 117 2.5E-52 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 PRINTS PR00423 Cell division protein FtsZ signature 211 232 2.5E-52 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS01185 0810140475e072ea7fe24105f2bb3498 383 PRINTS PR00423 Cell division protein FtsZ signature 125 146 2.5E-52 T 28-03-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 AM348_RS21820 ddbb08c13d9f70f1c688f2a91b8d99ff 300 Pfam PF04754 Putative transposase, YhgA-like 8 209 8.5E-91 T 28-03-2018 IPR006842 Transposase (putative), YhgA-like AM348_RS21820 ddbb08c13d9f70f1c688f2a91b8d99ff 300 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 295 2.9E-60 T 28-03-2018 IPR010106 Recombination-promoting nuclease RpnA AM348_RS15100 36445623ee7f1c24b55307410367bc87 131 Pfam PF01124 MAPEG family 3 120 2.4E-25 T 28-03-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein AM348_RS15100 36445623ee7f1c24b55307410367bc87 131 SUPERFAMILY SSF161084 4 127 2.35E-30 T 28-03-2018 AM348_RS15100 36445623ee7f1c24b55307410367bc87 131 Gene3D G3DSA:1.20.120.550 1 127 4.7E-24 T 28-03-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-39 T 28-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 Gene3D G3DSA:2.60.15.10 1 90 1.2E-27 T 28-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 21.743 T 28-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 Gene3D G3DSA:1.20.5.440 91 131 1.8E-13 T 28-03-2018 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 1.7E-29 T 28-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 2.7E-13 T 28-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 1.9E-46 T 28-03-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 SUPERFAMILY SSF46604 88 137 1.83E-15 T 28-03-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05290 7c822d833aaa9ab068106d69b8936a09 139 SUPERFAMILY SSF51344 3 86 2.49E-24 T 28-03-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS03430 64a3fa24b83cea41ebf94c9acbbf7ab2 549 Pfam PF00474 Sodium:solute symporter family 63 468 5.8E-138 T 28-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS03430 64a3fa24b83cea41ebf94c9acbbf7ab2 549 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 63 466 2.4E-63 T 28-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS03430 64a3fa24b83cea41ebf94c9acbbf7ab2 549 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 450 470 - T 28-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS03430 64a3fa24b83cea41ebf94c9acbbf7ab2 549 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 2 549 0.0 T 28-03-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 AM348_RS03430 64a3fa24b83cea41ebf94c9acbbf7ab2 549 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 1 549 59.372 T 28-03-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 AM348_RS03430 64a3fa24b83cea41ebf94c9acbbf7ab2 549 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 178 203 - T 28-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS17395 909e0465218bd4fe1615b4109b3c020a 200 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 34 194 30.648 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS17395 909e0465218bd4fe1615b4109b3c020a 200 Pfam PF00719 Inorganic pyrophosphatase 38 194 2.5E-46 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS17395 909e0465218bd4fe1615b4109b3c020a 200 Gene3D G3DSA:3.90.80.10 21 200 2.5E-48 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS17395 909e0465218bd4fe1615b4109b3c020a 200 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 85 91 - T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS17395 909e0465218bd4fe1615b4109b3c020a 200 SUPERFAMILY SSF50324 29 194 2.22E-54 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS11940 1ea92cf1a02593cb31b439945624dde6 191 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 1 191 3.0E-90 T 28-03-2018 IPR010938 Protein of unknown function DUF1131 AM348_RS11940 1ea92cf1a02593cb31b439945624dde6 191 Pfam PF06572 Protein of unknown function (DUF1131) 24 191 5.5E-81 T 28-03-2018 IPR010938 Protein of unknown function DUF1131 AM348_RS11940 1ea92cf1a02593cb31b439945624dde6 191 Gene3D G3DSA:2.60.460.10 31 190 3.6E-68 T 28-03-2018 AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 SUPERFAMILY SSF53067 211 403 4.44E-43 T 28-03-2018 AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 Gene3D G3DSA:1.10.10.10 11 77 4.0E-8 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 Pfam PF00480 ROK family 88 389 1.4E-52 T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 Gene3D G3DSA:3.30.420.40 206 395 2.8E-40 T 28-03-2018 AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 SUPERFAMILY SSF53067 83 210 7.2E-24 T 28-03-2018 AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 Gene3D G3DSA:3.30.420.40 78 205 1.7E-16 T 28-03-2018 AM348_RS17885 7775c12f7afd8de754ccf506a0895535 406 SUPERFAMILY SSF46785 12 77 1.44E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Pfam PF10371 Domain of unknown function 626 678 6.1E-23 T 28-03-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 SMART SM00890 622 679 4.1E-29 T 28-03-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 SUPERFAMILY SSF53323 419 668 1.96E-76 T 28-03-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1165 0.0 T 28-03-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Gene3D G3DSA:3.40.50.970 1 254 3.0E-47 T 28-03-2018 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 SUPERFAMILY SSF52922 256 411 1.57E-43 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 SUPERFAMILY SSF52518 2 254 5.89E-71 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Gene3D G3DSA:3.40.920.10 416 622 3.5E-54 T 28-03-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 243 2.1E-80 T 28-03-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Gene3D G3DSA:3.40.50.970 793 1168 2.2E-104 T 28-03-2018 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 610 3.5E-34 T 28-03-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 SUPERFAMILY SSF52518 794 1166 2.25E-118 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Pfam PF13484 4Fe-4S double cluster binding domain 689 757 8.4E-10 T 28-03-2018 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Gene3D G3DSA:3.30.70.20 669 791 2.0E-29 T 28-03-2018 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Gene3D G3DSA:3.40.50.920 255 415 7.6E-43 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 347 3.1E-15 T 28-03-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 PIRSF PIRSF000159 1 1174 0.0 T 28-03-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 954 1066 2.7E-8 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 SUPERFAMILY SSF54862 665 838 5.44E-23 T 28-03-2018 AM348_RS16795 808256c003d3f569165b17c4abb60a57 1174 Gene3D G3DSA:4.10.780.10 634 668 2.2E-15 T 28-03-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 AM348_RS12200 c583ab50fd90918cd75838fbad52db0c 80 Pfam PF10810 Protein of unknown function (DUF2545) 1 79 1.2E-32 T 28-03-2018 IPR024470 Protein of unknown function DUF2545 AM348_RS12200 c583ab50fd90918cd75838fbad52db0c 80 ProDom PD857460 MEMBRANE YFDY INNER TRANSMEMBRANE STY2638 ECS3257 1 80 7.0E-22 T 28-03-2018 IPR024470 Protein of unknown function DUF2545 AM348_RS11360 316c22e835a2f5d695283ad5e6d30024 247 Pfam PF13942 YfhG lipoprotein 48 221 1.3E-77 T 28-03-2018 IPR025262 Quorum-sensing regulator protein G AM348_RS11360 316c22e835a2f5d695283ad5e6d30024 247 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 18 221 2.0E-66 T 28-03-2018 AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.2E-103 T 28-03-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 Gene3D G3DSA:3.30.1020.10 154 183 1.6E-9 T 28-03-2018 AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 1.8E-6 T 28-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 SUPERFAMILY SSF52833 1 186 1.71E-53 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 Gene3D G3DSA:3.40.30.10 5 153 8.7E-32 T 28-03-2018 AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 Pfam PF00578 AhpC/TSA family 10 133 1.5E-32 T 28-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS22275 413a0f7572e9c0012a50576adc19ec97 187 PIRSF PIRSF000239 1 187 3.6E-50 T 28-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 Gene3D G3DSA:3.30.565.10 336 552 6.2E-23 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 Gene3D G3DSA:3.30.450.40 192 335 5.9E-7 T 28-03-2018 IPR029016 GAF domain-like AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 Pfam PF07694 5TMR of 5TMR-LYT 29 193 2.0E-44 T 28-03-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 SMART SM00387 452 554 9.0E-9 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 551 5.4E-7 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 Pfam PF06580 Histidine kinase 359 438 3.4E-24 T 28-03-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 SUPERFAMILY SSF55874 414 551 4.19E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12175 728ce576b1ea6448d04a79440b34245e 565 SUPERFAMILY SSF55781 226 345 1.43E-8 T 28-03-2018 IPR029016 GAF domain-like AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 Gene3D G3DSA:2.40.170.20 186 728 2.6E-79 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 Gene3D G3DSA:2.170.130.10 36 183 2.7E-18 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 Pfam PF00593 TonB dependent receptor 267 727 1.3E-49 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 SUPERFAMILY SSF56935 38 728 1.41E-117 T 28-03-2018 AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 48 - T 28-03-2018 IPR010916 TonB box, conserved site AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 711 728 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 76 728 4.1E-161 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS19545 501c588fccd8eae8945bea6cef53987d 728 Pfam PF07715 TonB-dependent Receptor Plug Domain 74 173 2.8E-14 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 SUPERFAMILY SSF56420 3 164 3.66E-61 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 Gene3D G3DSA:3.90.45.10 1 169 3.6E-61 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 PIRSF PIRSF004749 1 168 1.9E-55 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 7.1E-66 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 PRINTS PR01576 Peptide deformylase signature 120 149 1.3E-38 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 PRINTS PR01576 Peptide deformylase signature 89 100 1.3E-38 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 PRINTS PR01576 Peptide deformylase signature 33 62 1.3E-38 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 PRINTS PR01576 Peptide deformylase signature 101 119 1.3E-38 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 Pfam PF01327 Polypeptide deformylase 4 152 9.9E-51 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS07510 c1228c6ac0a47eab031f4bcea2913bd0 169 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.825 T 28-03-2018 IPR023635 Peptide deformylase AM348_RS23215 c373c0b1769f84caf750acb055c708ec 105 SUPERFAMILY SSF82657 1 89 3.01E-30 T 28-03-2018 IPR002634 BolA protein AM348_RS23215 c373c0b1769f84caf750acb055c708ec 105 PIRSF PIRSF003113 1 100 1.1E-32 T 28-03-2018 IPR002634 BolA protein AM348_RS23215 c373c0b1769f84caf750acb055c708ec 105 Pfam PF01722 BolA-like protein 11 84 6.4E-28 T 28-03-2018 IPR002634 BolA protein AM348_RS23215 c373c0b1769f84caf750acb055c708ec 105 Gene3D G3DSA:3.30.300.90 1 91 9.7E-28 T 28-03-2018 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Gene3D G3DSA:1.10.10.60 567 635 9.1E-14 T 28-03-2018 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 SMART SM00091 203 269 4.0E-6 T 28-03-2018 IPR000014 PAS domain AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 SMART SM00382 347 488 8.3E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 SUPERFAMILY SSF52540 331 567 1.03E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Pfam PF02954 Bacterial regulatory protein, Fis family 590 628 7.2E-13 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 351 364 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 410 425 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Gene3D G3DSA:1.10.8.60 497 566 1.5E-11 T 28-03-2018 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Pfam PF00158 Sigma-54 interaction domain 330 490 4.2E-36 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Gene3D G3DSA:3.30.450.20 191 303 5.1E-8 T 28-03-2018 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 SUPERFAMILY SSF55785 202 300 1.59E-6 T 28-03-2018 IPR000014 PAS domain AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Pfam PF00989 PAS fold 204 306 1.6E-14 T 28-03-2018 IPR013767 PAS fold GO:0006355 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 Gene3D G3DSA:3.40.50.300 323 496 8.7E-20 T 28-03-2018 AM348_RS08550 8e3098eeac44fc017701d107406e9184 641 SUPERFAMILY SSF46689 583 631 8.51E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 Pfam PF00717 Peptidase S24-like 114 180 4.9E-16 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 2.4E-14 T 28-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 2.4E-14 T 28-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 2.4E-14 T 28-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 8.8E-87 T 28-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 SUPERFAMILY SSF51306 76 198 4.88E-39 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 Gene3D G3DSA:2.10.109.10 80 198 3.8E-27 T 28-03-2018 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 Gene3D G3DSA:1.10.10.10 1 70 6.4E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 SUPERFAMILY SSF46785 3 70 1.82E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 Pfam PF01726 LexA DNA binding domain 1 65 4.1E-31 T 28-03-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 AM348_RS03580 5e947c832b2a29c54c88e72812baffa8 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.852 T 28-03-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 AM348_RS17750 8e2ef536c3f33131b178812ab163de71 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 1.0E-105 T 28-03-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE AM348_RS17750 8e2ef536c3f33131b178812ab163de71 232 SUPERFAMILY SSF52540 2 221 6.6E-59 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17750 8e2ef536c3f33131b178812ab163de71 232 Gene3D G3DSA:3.40.50.300 1 226 9.1E-55 T 28-03-2018 AM348_RS17750 8e2ef536c3f33131b178812ab163de71 232 Pfam PF00005 ABC transporter 17 161 2.8E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17750 8e2ef536c3f33131b178812ab163de71 232 SMART SM00382 26 211 2.9E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 SMART SM01091 439 518 2.4E-26 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 Pfam PF03741 Integral membrane protein TerC family 14 203 6.8E-50 T 28-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 Pfam PF00571 CBS domain 372 422 1.2E-5 T 28-03-2018 IPR000644 CBS domain AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 Pfam PF00571 CBS domain 302 358 8.5E-5 T 28-03-2018 IPR000644 CBS domain AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 Pfam PF03471 Transporter associated domain 440 515 2.1E-20 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 Gene3D G3DSA:3.10.580.10 283 434 4.4E-27 T 28-03-2018 AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 Gene3D G3DSA:3.30.465.10 435 518 2.5E-23 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 SUPERFAMILY SSF56176 437 522 1.36E-22 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS13680 d51c3f4d1f2db3887b92a922fe480e48 527 SUPERFAMILY SSF54631 290 424 1.18E-25 T 28-03-2018 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 Gene3D G3DSA:1.10.10.10 4 91 5.8E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 SUPERFAMILY SSF46785 3 86 4.82E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 Gene3D G3DSA:3.40.190.10 92 177 6.5E-17 T 28-03-2018 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 Gene3D G3DSA:3.40.190.10 178 263 1.7E-23 T 28-03-2018 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 SUPERFAMILY SSF53850 93 295 7.6E-42 T 28-03-2018 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-21 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.4E-10 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.4E-10 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.4E-10 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09855 07d1c8d35b6e1fc11d6bd9dc02fd7a48 305 Pfam PF03466 LysR substrate binding domain 91 292 1.2E-41 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 28-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 Gene3D G3DSA:3.40.47.10 265 389 2.6E-33 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 28-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 Gene3D G3DSA:3.40.47.10 163 264 4.0E-26 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 SUPERFAMILY SSF53901 271 391 5.21E-42 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 1.0E-51 T 28-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 Pfam PF00108 Thiolase, N-terminal domain 4 261 4.0E-102 T 28-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 Gene3D G3DSA:3.40.47.10 1 162 2.1E-38 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 28-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 PIRSF PIRSF000429 1 392 4.6E-131 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 6.1E-143 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS09655 2839d702e6a0adbef51e04776ed52f8b 392 SUPERFAMILY SSF53901 3 269 2.36E-84 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Gene3D G3DSA:1.10.601.10 115 450 3.8E-109 T 28-03-2018 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Gene3D G3DSA:1.10.601.10 3 114 2.1E-14 T 28-03-2018 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 SUPERFAMILY SSF88946 115 448 1.57E-104 T 28-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Pfam PF04542 Sigma-70 region 2 381 450 1.7E-21 T 28-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Pfam PF04545 Sigma-70, region 4 549 602 1.0E-18 T 28-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Gene3D G3DSA:1.10.10.10 543 614 6.8E-27 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 405 418 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 PRINTS PR00046 Major sigma-70 factor signature 574 589 6.4E-31 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 PRINTS PR00046 Major sigma-70 factor signature 429 437 6.4E-31 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 PRINTS PR00046 Major sigma-70 factor signature 589 600 6.4E-31 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 PRINTS PR00046 Major sigma-70 factor signature 405 418 6.4E-31 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 PRINTS PR00046 Major sigma-70 factor signature 553 565 6.4E-31 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.8E-12 T 28-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 SUPERFAMILY SSF88659 511 613 2.58E-25 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 614 46.784 T 28-03-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Pfam PF04539 Sigma-70 region 3 460 535 3.6E-29 T 28-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 377 602 3.6E-38 T 28-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Pfam PF04546 Sigma-70, non-essential region 139 350 8.4E-76 T 28-03-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 377 613 1.3E-120 T 28-03-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Pfam PF03979 Sigma-70 factor, region 1.1 4 81 4.5E-30 T 28-03-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 Gene3D G3DSA:1.10.10.10 451 501 8.0E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 574 600 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS08610 03f4f6c7e23500522aa9ccfe52681188 615 SUPERFAMILY SSF88659 454 527 8.78E-21 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 185 210 - T 28-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 SUPERFAMILY SSF48179 384 465 6.63E-18 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 184 8.2E-64 T 28-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 SUPERFAMILY SSF48179 187 287 2.04E-27 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 SUPERFAMILY SSF51735 5 187 4.06E-56 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 Gene3D G3DSA:1.10.1040.10 385 470 2.3E-16 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 TIGRFAM TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC 6 468 1.2E-215 T 28-03-2018 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC GO:0008691|GO:0010124 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 285 8.2E-28 T 28-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 387 465 6.8E-15 T 28-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 Gene3D G3DSA:3.40.50.720 2 186 8.7E-55 T 28-03-2018 AM348_RS19575 89484866f5cdd7af502364a1ddab273c 472 Gene3D G3DSA:1.10.1040.10 187 290 2.2E-24 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 639 6.8E-281 T 28-03-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 Gene3D G3DSA:3.40.50.1220 212 414 5.3E-38 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 437 596 1.2E-41 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 SUPERFAMILY SSF52518 2 208 1.81E-31 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 222 353 1.7E-29 T 28-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 473 492 - T 28-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 Gene3D G3DSA:3.40.50.970 1 210 2.2E-47 T 28-03-2018 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 SUPERFAMILY SSF52467 185 371 1.82E-40 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 Gene3D G3DSA:3.40.50.970 415 641 5.9E-42 T 28-03-2018 AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 SUPERFAMILY SSF52518 413 629 4.29E-55 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS10935 f784723d5c38a180e9c3b20083336e1c 641 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 196 2.8E-32 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 PIRSF PIRSF001467 1 164 1.4E-28 T 28-03-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 161 3.3E-48 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 1.0E-11 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 1.0E-11 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 1.0E-11 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 Gene3D G3DSA:2.40.100.10 1 164 9.0E-53 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 SUPERFAMILY SSF50891 1 162 3.51E-60 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS22755 1c095d143b286fd9d88413157e99f945 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 28-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AM348_RS13835 81fb3b18a8884407a74a2d79cd1edb04 377 Gene3D G3DSA:3.40.50.2000 178 355 2.6E-31 T 28-03-2018 AM348_RS13835 81fb3b18a8884407a74a2d79cd1edb04 377 SUPERFAMILY SSF53756 5 375 8.37E-52 T 28-03-2018 AM348_RS13835 81fb3b18a8884407a74a2d79cd1edb04 377 Pfam PF00534 Glycosyl transferases group 1 198 343 8.0E-27 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 Gene3D G3DSA:3.40.35.10 161 317 6.5E-60 T 28-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 SUPERFAMILY SSF53062 3 128 1.57E-37 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 2 117 2.1E-51 T 28-03-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 Pfam PF03830 PTS system sorbose subfamily IIB component 162 309 4.2E-55 T 28-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 Pfam PF03610 PTS system fructose IIA component 5 116 7.7E-36 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 161 309 3.0E-55 T 28-03-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 SUPERFAMILY SSF52728 160 318 2.62E-54 T 28-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM348_RS15380 bf7c281cdee4f92f940e9dbff67a531d 320 Gene3D G3DSA:3.40.50.510 2 136 4.8E-37 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS02345 0cb1c7be1cef7948f11dd006d62ffa3e 559 Pfam PF00589 Phage integrase family 223 383 2.0E-16 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS02345 0cb1c7be1cef7948f11dd006d62ffa3e 559 SUPERFAMILY SSF56349 97 392 5.0E-47 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS02345 0cb1c7be1cef7948f11dd006d62ffa3e 559 Pfam PF13356 Arm DNA-binding domain 3 88 1.8E-17 T 28-03-2018 IPR025166 Integrase, DNA-binding domain AM348_RS02345 0cb1c7be1cef7948f11dd006d62ffa3e 559 Gene3D G3DSA:1.10.150.130 86 202 6.8E-13 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS02345 0cb1c7be1cef7948f11dd006d62ffa3e 559 Gene3D G3DSA:1.10.443.10 203 394 3.5E-21 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 SUPERFAMILY SSF53383 2 375 8.87E-102 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 371 4.6E-87 T 28-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 78.26 T 28-03-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 3.6E-219 T 28-03-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 Gene3D G3DSA:3.90.1150.10 243 376 2.2E-25 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 Gene3D G3DSA:3.40.640.10 1 242 3.6E-48 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS05000 edb8bf8919f8ff6e5f105e64b6bf6b87 376 PIRSF PIRSF000390 1 376 1.5E-120 T 28-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 PIRSF PIRSF002799 11 844 0.0 T 28-03-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 79 1.4E-28 T 28-03-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Gene3D G3DSA:1.20.5.100 57 95 4.6E-17 T 28-03-2018 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Gene3D G3DSA:3.40.710.10 404 833 7.5E-97 T 28-03-2018 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Pfam PF00905 Penicillin binding protein transpeptidase domain 473 715 1.8E-25 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Gene3D G3DSA:3.30.2060.10 112 198 5.0E-26 T 28-03-2018 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 SUPERFAMILY SSF56601 412 787 3.0E-104 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 SUPERFAMILY SSF56601 362 384 3.0E-104 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 68 795 0.0 T 28-03-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Pfam PF00912 Transglycosylase 209 380 3.3E-54 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Gene3D G3DSA:1.10.3810.10 199 397 3.4E-61 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 SUPERFAMILY SSF53955 197 403 3.09E-65 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS00890 649675792691dca4b0bc3ba02656d350 846 Pfam PF14814 Bifunctional transglycosylase second domain 113 197 5.0E-26 T 28-03-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 2.2E-106 T 28-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 SUPERFAMILY SSF75625 3 244 9.94E-97 T 28-03-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 Gene3D G3DSA:3.30.70.980 178 247 9.8E-13 T 28-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 36.612 T 28-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 Gene3D G3DSA:1.10.10.200 1 78 7.2E-30 T 28-03-2018 IPR017856 Integrase, N-terminal zinc-binding domain-like AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 Pfam PF01709 Transcriptional regulator 5 235 5.0E-94 T 28-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS15125 5bc965d3adb01dfe88b3b0e2a8a83e11 247 Gene3D G3DSA:3.30.70.980 83 177 1.2E-31 T 28-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 455 1.2E-9 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 430 1.2E-9 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 416 1.2E-9 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 474 1.2E-9 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 Gene3D G3DSA:1.10.287.130 244 315 1.4E-13 T 28-03-2018 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 SUPERFAMILY SSF55874 325 475 1.44E-31 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 SMART SM00388 254 322 4.2E-17 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 SMART SM00387 365 477 7.7E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 255 318 1.2E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 Gene3D G3DSA:3.30.565.10 316 477 8.4E-30 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 476 2.5E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11355 e79ce48d9eb34a50ccc608944fdd58a5 481 SUPERFAMILY SSF47384 241 318 2.35E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 374 3.9E-7 T 28-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 2.3E-26 T 28-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Gene3D G3DSA:1.20.5.100 194 211 1.2E-13 T 28-03-2018 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 SMART SM00984 300 387 3.4E-12 T 28-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 168 8.5E-32 T 28-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 PIRSF PIRSF500134 1 343 8.5E-120 T 28-03-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 PIRSF PIRSF500134 338 388 0.0019 T 28-03-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Gene3D G3DSA:3.40.50.720 1 193 7.3E-46 T 28-03-2018 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 378 5.6E-101 T 28-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 PIRSF PIRSF000124 1 388 7.2E-137 T 28-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 SUPERFAMILY SSF48179 191 287 1.87E-29 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Gene3D G3DSA:3.40.50.720 288 388 2.8E-16 T 28-03-2018 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 SUPERFAMILY SSF52413 283 387 3.14E-27 T 28-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 Gene3D G3DSA:1.10.1040.10 212 287 2.1E-26 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS13845 5d8cdb6d25e86f0a0253b454485b6eb4 388 SUPERFAMILY SSF51735 1 194 2.36E-46 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 Gene3D G3DSA:1.10.287.950 334 532 8.9E-48 T 28-03-2018 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 SMART SM00283 281 528 5.2E-88 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 Gene3D G3DSA:1.20.120.30 38 200 1.1E-28 T 28-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 SMART SM00304 228 280 1.4E-10 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 SUPERFAMILY SSF47170 31 179 4.71E-27 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 496 8.5E-56 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 Pfam PF02203 Tar ligand binding domain homologue 15 184 5.0E-37 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 Pfam PF00672 HAMP domain 228 275 3.7E-9 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 SMART SM00319 51 190 5.8E-29 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 Gene3D G3DSA:1.10.287.500 258 333 0.0022 T 28-03-2018 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 379 406 1.9E-61 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 408 437 1.9E-61 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 302 331 1.9E-61 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 456 485 1.9E-61 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 19 44 1.9E-61 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS16995 ac0f81289e30bba9584d78226f3344da 562 SUPERFAMILY SSF58104 248 529 2.75E-73 T 28-03-2018 AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 SUPERFAMILY SSF54862 136 183 1.2E-40 T 28-03-2018 AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 SUPERFAMILY SSF54862 2 101 1.2E-40 T 28-03-2018 AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 82 93 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 Gene3D G3DSA:3.30.70.20 20 54 3.5E-8 T 28-03-2018 AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 Gene3D G3DSA:3.30.70.20 85 187 3.3E-16 T 28-03-2018 AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 Pfam PF00037 4Fe-4S binding domain 76 98 9.1E-7 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 Gene3D G3DSA:3.30.70.20 1 19 0.021 T 28-03-2018 AM348_RS10360 17e52f9953a41380bf26dcfc82c562af 203 Gene3D G3DSA:3.30.70.20 55 84 5.3E-10 T 28-03-2018 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 Gene3D G3DSA:1.10.10.10 118 214 1.4E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.3E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.3E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.3E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 SMART SM00421 153 210 6.8E-23 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 SUPERFAMILY SSF46894 148 212 6.46E-19 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS20090 5603f17fa15e84f8039f9f091ebbfd25 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 5.3E-20 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23570 16a9f4106cf4cebaeb78e88df29fa82b 207 Hamap MF_02072 Inhibitor of hydrogen peroxide resistance [iprA]. 1 207 46.048 T 28-03-2018 IPR034719 Inhibitor of hydrogen peroxide resistance AM348_RS23570 16a9f4106cf4cebaeb78e88df29fa82b 207 Pfam PF15977 Winged helix-turn-helix DNA binding 138 204 1.4E-27 T 28-03-2018 AM348_RS23570 16a9f4106cf4cebaeb78e88df29fa82b 207 Gene3D G3DSA:1.10.10.10 124 206 6.7E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23570 16a9f4106cf4cebaeb78e88df29fa82b 207 Gene3D G3DSA:2.60.120.10 16 123 7.4E-5 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS23570 16a9f4106cf4cebaeb78e88df29fa82b 207 SUPERFAMILY SSF51206 31 117 2.36E-7 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 Gene3D G3DSA:3.40.50.2300 1 120 2.6E-34 T 28-03-2018 AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 9.5E-21 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 Pfam PF00072 Response regulator receiver domain 3 113 3.3E-26 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 SMART SM00862 145 216 1.9E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 SUPERFAMILY SSF52172 1 166 9.81E-37 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 SMART SM00448 1 112 2.8E-36 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03195 e4a60cee7a016cd20ed705d4f5af6600 222 Gene3D G3DSA:1.10.10.10 121 222 1.7E-26 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 248 6.3E-50 T 28-03-2018 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 8.4E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 8.4E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 8.4E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 SUPERFAMILY SSF51735 4 249 1.41E-65 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 15 32 3.7E-66 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 162 185 3.7E-66 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 227 246 3.7E-66 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 97 117 3.7E-66 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 201 220 3.7E-66 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 77 94 3.7E-66 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 180 0.0044 T 28-03-2018 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 11 250 5.8E-105 T 28-03-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 Gene3D G3DSA:3.40.50.720 46 251 1.5E-55 T 28-03-2018 AM348_RS22335 c8d56fbc16feb2db37e87a8e0af1eb3d 251 Gene3D G3DSA:3.40.50.720 1 45 9.9E-8 T 28-03-2018 AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 Pfam PF00005 ABC transporter 29 178 1.5E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 Pfam PF00005 ABC transporter 280 434 8.9E-18 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 SUPERFAMILY SSF52540 253 490 1.84E-40 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 Gene3D G3DSA:3.40.50.300 2 240 7.3E-52 T 28-03-2018 AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 SUPERFAMILY SSF52540 12 236 6.41E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 SMART SM00382 288 483 0.65 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 SMART SM00382 38 233 1.5E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13215 b5391e0c668509138fc0b96e3e8a50eb 506 Gene3D G3DSA:3.40.50.300 246 498 2.3E-32 T 28-03-2018 AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 SUPERFAMILY SSF48008 76 215 2.88E-19 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 SUPERFAMILY SSF46785 13 74 1.34E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 SMART SM00895 80 212 1.2E-18 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 SMART SM00345 12 70 7.3E-18 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 70 1.5E-12 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 Gene3D G3DSA:1.10.10.10 2 71 2.1E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 Pfam PF07729 FCD domain 80 210 5.5E-22 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS10685 418bb3cd8af31922d3ac3498ce544d5a 228 Gene3D G3DSA:1.20.120.530 72 213 1.2E-30 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 Pfam PF03466 LysR substrate binding domain 95 280 2.2E-18 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 Gene3D G3DSA:3.40.190.10 184 268 3.1E-11 T 28-03-2018 AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 SUPERFAMILY SSF46785 8 91 1.69E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 Gene3D G3DSA:3.40.190.10 94 183 3.8E-7 T 28-03-2018 AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 SUPERFAMILY SSF53850 93 288 7.6E-24 T 28-03-2018 AM348_RS08365 4d894fcf028c93b303775c2033ab5ba0 298 Gene3D G3DSA:1.10.10.10 2 89 1.5E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 Pfam PF07715 TonB-dependent Receptor Plug Domain 132 244 1.6E-19 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 Pfam PF00593 TonB dependent receptor 329 772 1.3E-47 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 Pfam PF07660 Secretin and TonB N terminus short domain 58 107 1.6E-8 T 28-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 132 774 4.6E-163 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 SUPERFAMILY SSF56935 117 774 8.64E-120 T 28-03-2018 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 Gene3D G3DSA:2.170.130.10 127 256 7.5E-22 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 SMART SM00965 56 107 4.0E-13 T 28-03-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 Gene3D G3DSA:2.40.170.20 257 774 1.2E-81 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19675 02f86f2f9b63fcd4cd610b5f83bdf9c6 774 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 757 774 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS00240 8c51633b0f9f5d18bfdbd5be7eabb486 495 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS00240 8c51633b0f9f5d18bfdbd5be7eabb486 495 Gene3D G3DSA:3.40.605.10 6 282 1.9E-100 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS00240 8c51633b0f9f5d18bfdbd5be7eabb486 495 Gene3D G3DSA:3.40.309.10 283 475 5.6E-65 T 28-03-2018 AM348_RS00240 8c51633b0f9f5d18bfdbd5be7eabb486 495 Pfam PF00171 Aldehyde dehydrogenase family 32 489 3.4E-168 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS00240 8c51633b0f9f5d18bfdbd5be7eabb486 495 SUPERFAMILY SSF53720 11 492 6.68E-163 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS00240 8c51633b0f9f5d18bfdbd5be7eabb486 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS12145 fd7eacb30fbee6c6b7e61bc5e6a24499 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 126 136 3.6E-5 T 28-03-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AM348_RS12145 fd7eacb30fbee6c6b7e61bc5e6a24499 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 270 282 3.6E-5 T 28-03-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AM348_RS12145 fd7eacb30fbee6c6b7e61bc5e6a24499 329 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 283 296 3.6E-5 T 28-03-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 AM348_RS12145 fd7eacb30fbee6c6b7e61bc5e6a24499 329 SUPERFAMILY SSF51430 13 327 1.7E-91 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS12145 fd7eacb30fbee6c6b7e61bc5e6a24499 329 Pfam PF00248 Aldo/keto reductase family 29 328 2.0E-68 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS12145 fd7eacb30fbee6c6b7e61bc5e6a24499 329 Gene3D G3DSA:3.20.20.100 15 329 1.3E-89 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 Gene3D G3DSA:3.40.50.2300 1 60 0.015 T 28-03-2018 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 ProSitePatterns PS00622 LuxR-type HTH domain signature. 154 181 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 3.1E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 3.1E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 3.1E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 SUPERFAMILY SSF46894 124 189 3.4E-14 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 Gene3D G3DSA:1.10.10.10 85 197 4.7E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 187 3.9E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS03005 777b4d66dcbda390e5fcd98dc16bccf5 199 SMART SM00421 137 194 1.5E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06260 0ba25676109e6147f50eef47ca4e7aaa 233 SUPERFAMILY SSF103515 87 233 3.14E-13 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS06260 0ba25676109e6147f50eef47ca4e7aaa 233 Pfam PF03797 Autotransporter beta-domain 89 210 1.1E-12 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS06260 0ba25676109e6147f50eef47ca4e7aaa 233 Gene3D G3DSA:2.40.128.130 17 233 1.1E-13 T 28-03-2018 AM348_RS06260 0ba25676109e6147f50eef47ca4e7aaa 233 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 89 233 1.1E-4 T 28-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 Gene3D G3DSA:2.130.10.10 219 360 4.8E-30 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 Gene3D G3DSA:2.130.10.10 19 106 6.5E-11 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 Gene3D G3DSA:2.130.10.10 107 218 3.9E-29 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 Pfam PF10282 Lactonase, 7-bladed beta-propeller 133 203 3.4E-7 T 28-03-2018 IPR019405 Lactonase, 7-bladed beta propeller AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 142 182 2.3E-10 T 28-03-2018 IPR011964 YVTN beta-propeller repeat AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 317 353 8.7E-8 T 28-03-2018 IPR011964 YVTN beta-propeller repeat AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 226 263 7.0E-12 T 28-03-2018 IPR011964 YVTN beta-propeller repeat AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 27 64 1.1E-8 T 28-03-2018 IPR011964 YVTN beta-propeller repeat AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 184 225 3.3E-14 T 28-03-2018 IPR011964 YVTN beta-propeller repeat AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 SUPERFAMILY SSF51004 113 354 1.96E-72 T 28-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM348_RS12050 fab598f865ac72e476b71280fed64ad5 363 SUPERFAMILY SSF51004 25 76 1.96E-72 T 28-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:3.10.350.10 37 103 2.5E-6 T 28-03-2018 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Pfam PF11924 Inverse autotransporter, beta-domain 124 394 1.5E-100 T 28-03-2018 IPR024519 Inverse autotransporter, beta-domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 1012 1100 1.2E-6 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 1114 1198 1.4E-13 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 510 599 2.5E-5 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 713 800 7.7E-11 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 609 698 0.38 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 813 900 6.6E-14 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SMART SM00634 912 1000 3.3E-15 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 PRINTS PR01369 Intimin signature 274 293 2.1E-13 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 PRINTS PR01369 Intimin signature 430 442 2.1E-13 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 PRINTS PR01369 Intimin signature 246 261 2.1E-13 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 390 551 6.5E-10 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 552 650 8.3E-10 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 1060 1145 4.6E-19 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 955 1059 1.0E-14 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 651 753 3.0E-15 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 861 954 2.0E-20 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.120.260 754 860 7.7E-15 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 917 1002 3.14E-16 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Pfam PF02369 Bacterial Ig-like domain (group 1) 1118 1195 5.5E-13 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Gene3D G3DSA:2.60.40.1120 1146 1219 4.7E-5 T 28-03-2018 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 514 602 1.24E-12 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 813 905 2.55E-17 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 1101 1200 2.16E-21 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 1017 1104 8.44E-15 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 710 802 2.75E-18 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Pfam PF09134 Invasin, domain 3 710 807 4.8E-22 T 28-03-2018 IPR015217 Invasin, domain 3 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Pfam PF09134 Invasin, domain 3 607 705 2.7E-11 T 28-03-2018 IPR015217 Invasin, domain 3 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 Pfam PF09134 Invasin, domain 3 910 1006 1.6E-20 T 28-03-2018 IPR015217 Invasin, domain 3 AM348_RS18445 a576d77b214f9cf57cb3620ace13fecd 1287 SUPERFAMILY SSF49373 608 697 7.06E-8 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Gene3D G3DSA:3.30.70.20 331 383 0.021 T 28-03-2018 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Pfam PF10531 SLBB domain 296 344 1.0E-12 T 28-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 1.1E-46 T 28-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 SUPERFAMILY SSF142019 94 303 8.11E-61 T 28-03-2018 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 3.0E-32 T 28-03-2018 IPR026902 RnfC Barrel sandwich hybrid domain AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Pfam PF12838 4Fe-4S dicluster domain 377 430 2.7E-8 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS18120 8d0a295879790de85868022844aa83bb 705 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 1.6E-179 T 28-03-2018 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 705 266.772 T 28-03-2018 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 Gene3D G3DSA:3.30.70.20 384 485 2.4E-16 T 28-03-2018 AM348_RS18120 8d0a295879790de85868022844aa83bb 705 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18120 8d0a295879790de85868022844aa83bb 705 SUPERFAMILY SSF46548 336 443 2.27E-19 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS08750 62de7a710ee88c9bdd31114c1a1cec8c 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 43.199 T 28-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS08750 62de7a710ee88c9bdd31114c1a1cec8c 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 1.1E-82 T 28-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS08750 62de7a710ee88c9bdd31114c1a1cec8c 217 SUPERFAMILY SSF55821 7 213 1.67E-85 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS08750 62de7a710ee88c9bdd31114c1a1cec8c 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 209 1.2E-85 T 28-03-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS08750 62de7a710ee88c9bdd31114c1a1cec8c 217 Gene3D G3DSA:3.90.870.10 3 217 1.2E-92 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.30.70.20 90 176 8.0E-13 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 SUPERFAMILY SSF54862 196 291 1.16E-42 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 SUPERFAMILY SSF54862 1 161 1.16E-42 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 328 640 1.4E-23 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.30.70.20 59 89 7.7E-11 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.30.70.20 21 58 6.2E-6 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 204 315 8.9E-37 T 28-03-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:1.10.1060.10 177 320 1.6E-37 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.50.50.60 419 494 1.8E-19 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.50.50.60 495 573 1.2E-17 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Pfam PF13247 4Fe-4S dicluster domain 55 145 2.6E-10 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.20.20.70 321 342 0.026 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.40.50.720 343 418 9.3E-14 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 187 653 4.2E-259 T 28-03-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 SUPERFAMILY SSF51971 327 582 3.53E-68 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.30.70.20 1 20 0.12 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 Gene3D G3DSA:3.40.50.720 574 658 2.2E-7 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 PRINTS PR00419 Adrenodoxin reductase family signature 471 485 3.1E-37 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 PRINTS PR00419 Adrenodoxin reductase family signature 505 518 3.1E-37 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 PRINTS PR00419 Adrenodoxin reductase family signature 394 404 3.1E-37 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 PRINTS PR00419 Adrenodoxin reductase family signature 352 365 3.1E-37 T 28-03-2018 AM348_RS11800 28d0bbd3de66af413f057bc617d2e215 659 PRINTS PR00419 Adrenodoxin reductase family signature 329 351 3.1E-37 T 28-03-2018 AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 453 7.3E-199 T 28-03-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 Gene3D G3DSA:3.40.50.300 50 373 1.4E-80 T 28-03-2018 AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 SUPERFAMILY SSF52540 109 379 4.72E-92 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 450 3.5E-196 T 28-03-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 162 373 1.4E-70 T 28-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 SMART SM00382 174 357 7.3E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS14425 41489eb6b87917fe21b82dece796f5a5 456 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 364 373 - T 28-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 28-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 Gene3D G3DSA:3.60.150.10 3 358 2.4E-161 T 28-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.708 T 28-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 28-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 Pfam PF01264 Chorismate synthase 10 345 3.7E-142 T 28-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 28-03-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 PIRSF PIRSF001456 3 359 4.9E-141 T 28-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 8.3E-139 T 28-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS12375 04c64fc456b139a6f40678407d66cdfc 361 SUPERFAMILY SSF103263 4 353 2.22E-148 T 28-03-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 Pfam PF01820 D-ala D-ala ligase N-terminus 5 130 2.1E-29 T 28-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 SUPERFAMILY SSF52440 3 139 6.71E-36 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 107 118 - T 28-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 Gene3D G3DSA:3.30.470.20 214 360 7.0E-43 T 28-03-2018 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 SUPERFAMILY SSF56059 140 354 3.18E-61 T 28-03-2018 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 350 6.9E-119 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 Pfam PF07478 D-ala D-ala ligase C-terminus 147 348 2.3E-82 T 28-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 351 42.88 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 28-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 Gene3D G3DSA:3.40.50.20 1 150 4.2E-43 T 28-03-2018 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 PIRSF PIRSF039102 1 359 9.7E-138 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS23540 3c7de64666ca2b0f54203ae16abf09b9 364 Gene3D G3DSA:3.30.1490.20 155 213 3.2E-20 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 Gene3D G3DSA:1.10.230.10 282 379 5.1E-37 T 28-03-2018 IPR016143 Citrate synthase-like, small alpha subdomain AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 421 3.4E-243 T 28-03-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 Gene3D G3DSA:1.10.580.10 27 281 5.4E-86 T 28-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PRINTS PR00143 Citrate synthase signature 165 178 5.1E-56 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PRINTS PR00143 Citrate synthase signature 359 375 5.1E-56 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PRINTS PR00143 Citrate synthase signature 219 234 5.1E-56 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PRINTS PR00143 Citrate synthase signature 241 269 5.1E-56 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PRINTS PR00143 Citrate synthase signature 379 393 5.1E-56 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PRINTS PR00143 Citrate synthase signature 296 316 5.1E-56 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 SUPERFAMILY SSF48256 9 423 5.89E-168 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 Pfam PF00285 Citrate synthase, C-terminal domain 46 410 3.5E-132 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 PIRSF PIRSF001369 38 427 1.6E-176 T 28-03-2018 IPR024176 Citrate synthase, bacterial-type AM348_RS21745 e1f8e474274ae82f762c1f2b8b4eaade 427 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 28-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AM348_RS08865 a065fba5744bd33bcca8f765c5b01ae5 661 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 369 454 1.1E-7 T 28-03-2018 IPR018712 Domain of unknown function DUF2235 AM348_RS08865 a065fba5744bd33bcca8f765c5b01ae5 661 Gene3D G3DSA:2.30.110.20 2 147 2.4E-29 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS08865 a065fba5744bd33bcca8f765c5b01ae5 661 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 146 1.5E-35 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS08865 a065fba5744bd33bcca8f765c5b01ae5 661 Gene3D G3DSA:3.40.50.1820 163 586 3.0E-5 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS08865 a065fba5744bd33bcca8f765c5b01ae5 661 Pfam PF05638 Type VI secretion system effector, Hcp 6 135 8.7E-13 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS08865 a065fba5744bd33bcca8f765c5b01ae5 661 SUPERFAMILY SSF141452 5 148 3.01E-24 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Gene3D G3DSA:1.10.1790.10 186 279 0.009 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Gene3D G3DSA:1.10.1790.10 280 393 3.6E-21 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 540 556 - T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Pfam PF08279 HTH domain 7 63 9.0E-10 T 28-03-2018 IPR013196 Helix-turn-helix, type 11 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 SUPERFAMILY SSF52794 402 479 2.3E-7 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 497 628 3.8E-18 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 SUPERFAMILY SSF55804 491 629 4.01E-26 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 SUPERFAMILY SSF63520 295 392 3.66E-22 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Pfam PF05043 Mga helix-turn-helix domain 90 166 2.3E-11 T 28-03-2018 IPR007737 Mga helix-turn-helix domain AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Gene3D G3DSA:3.40.50.2300 399 484 2.4E-14 T 28-03-2018 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Gene3D G3DSA:3.40.930.10 491 632 1.2E-22 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Gene3D G3DSA:1.10.10.10 3 68 5.8E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Gene3D G3DSA:1.10.10.10 87 154 3.7E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02515 f97e9f5bc72f7e7d5413ca80d34f0e96 637 Pfam PF00874 PRD domain 301 387 3.1E-19 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Pfam PF00403 Heavy-metal-associated domain 105 158 2.1E-14 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Pfam PF00403 Heavy-metal-associated domain 8 61 3.8E-10 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Gene3D G3DSA:3.40.1110.10 543 643 1.1E-29 T 28-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF81653 321 418 9.15E-25 T 28-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 522 528 - T 28-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 28-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 ProSitePatterns PS01047 Heavy-metal-associated domain. 104 133 - T 28-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Gene3D G3DSA:3.30.70.100 95 166 2.7E-20 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Gene3D G3DSA:3.30.70.100 1 73 8.4E-14 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00943 Copper-transporting ATPase signature 140 160 1.6E-9 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00943 Copper-transporting ATPase signature 236 255 1.6E-9 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00943 Copper-transporting ATPase signature 308 326 1.6E-9 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00943 Copper-transporting ATPase signature 503 518 1.6E-9 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00943 Copper-transporting ATPase signature 441 455 1.6E-9 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00943 Copper-transporting ATPase signature 694 711 1.6E-9 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Pfam PF00122 E1-E2 ATPase 319 499 2.5E-51 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 232 826 8.4E-194 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF56784 575 823 2.3E-59 T 28-03-2018 IPR023214 HAD-like domain AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF56784 518 538 2.3E-59 T 28-03-2018 IPR023214 HAD-like domain AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 740 752 1.7E-25 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 534 1.7E-25 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 717 736 1.7E-25 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 368 382 1.7E-25 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 642 653 1.7E-25 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 664 674 1.7E-25 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Gene3D G3DSA:1.20.1110.10 281 542 6.5E-46 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Pfam PF00702 haloacid dehalogenase-like hydrolase 517 731 5.5E-49 T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 ProSitePatterns PS01229 Hypothetical cof family signature 2. 717 739 - T 28-03-2018 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF55008 101 164 1.44E-18 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF81665 285 322 1.57E-13 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF81665 766 785 1.57E-13 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF81665 419 514 1.57E-13 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 290 794 2.9E-90 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 Gene3D G3DSA:3.40.50.1000 644 783 2.5E-47 T 28-03-2018 IPR023214 HAD-like domain AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 251 826 5.8E-183 T 28-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM348_RS22905 bb80ae591432bf17eac2d9ca2e4b59f1 833 SUPERFAMILY SSF55008 2 67 3.93E-12 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS05800 4181cf83cf26ea2fecc18adef347d76c 91 SUPERFAMILY SSF63562 1 79 8.2E-25 T 28-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM348_RS05800 4181cf83cf26ea2fecc18adef347d76c 91 Gene3D G3DSA:3.90.940.10 1 91 5.9E-28 T 28-03-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM348_RS05800 4181cf83cf26ea2fecc18adef347d76c 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.321 T 28-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS05800 4181cf83cf26ea2fecc18adef347d76c 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 1.7E-30 T 28-03-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS05800 4181cf83cf26ea2fecc18adef347d76c 91 SMART SM01409 8 61 1.3E-15 T 28-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM348_RS05800 4181cf83cf26ea2fecc18adef347d76c 91 Pfam PF01192 RNA polymerase Rpb6 10 59 1.9E-15 T 28-03-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 AM348_RS10135 0e08156bb265c0317264d7fd4adc6deb 208 SUPERFAMILY SSF53335 11 204 1.99E-46 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS10135 0e08156bb265c0317264d7fd4adc6deb 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 2 207 5.0E-96 T 28-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AM348_RS10135 0e08156bb265c0317264d7fd4adc6deb 208 Gene3D G3DSA:3.40.50.150 8 206 6.4E-37 T 28-03-2018 AM348_RS10135 0e08156bb265c0317264d7fd4adc6deb 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 3.1E-79 T 28-03-2018 AM348_RS10135 0e08156bb265c0317264d7fd4adc6deb 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 28-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AM348_RS10135 0e08156bb265c0317264d7fd4adc6deb 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 38.942 T 28-03-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 95 103 3.3E-6 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 3.3E-6 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 77.243 T 28-03-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 Pfam PF01266 FAD dependent oxidoreductase 4 351 5.6E-45 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 SUPERFAMILY SSF54373 212 313 5.89E-18 T 28-03-2018 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 SUPERFAMILY SSF51905 313 370 5.74E-46 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 SUPERFAMILY SSF51905 2 216 5.74E-46 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS19995 ca52b96e9b90ef28d433a3790aeb5047 371 Gene3D G3DSA:3.50.50.60 1 371 1.5E-37 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 432 3.6E-111 T 28-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 SUPERFAMILY SSF102114 100 365 1.31E-54 T 28-03-2018 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 138 158 - T 28-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 Gene3D G3DSA:3.80.30.20 131 373 3.0E-48 T 28-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 Pfam PF04055 Radical SAM superfamily 140 317 4.6E-30 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 2 434 63.836 T 28-03-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 Gene3D G3DSA:2.40.50.140 374 435 1.1E-21 T 28-03-2018 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 Pfam PF00919 Uncharacterized protein family UPF0004 3 83 5.9E-21 T 28-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 SMART SM00729 134 359 5.6E-56 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS21050 44b8601d8e0c1d43a59aeb58806da5ee 435 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 3 432 7.3E-202 T 28-03-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Gene3D G3DSA:3.30.465.10 106 267 1.0E-78 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 PIRSF PIRSF000101 3 568 3.0E-304 T 28-03-2018 IPR012256 D-lactate dehydrogenase GO:0004457|GO:0005887|GO:0006089|GO:0050660|GO:0051287 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 SUPERFAMILY SSF55103 274 566 1.26E-115 T 28-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Gene3D G3DSA:3.30.70.610 268 347 7.1E-21 T 28-03-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Gene3D G3DSA:3.30.70.610 348 433 4.1E-30 T 28-03-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 SUPERFAMILY SSF56176 9 270 6.54E-74 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Pfam PF01565 FAD binding domain 46 165 3.7E-8 T 28-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Gene3D G3DSA:3.30.43.10 2 103 7.2E-11 T 28-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Gene3D G3DSA:3.30.1370.20 434 517 9.5E-43 T 28-03-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM348_RS13315 51be4079d787c021c74653f8b2625107 569 Pfam PF09330 D-lactate dehydrogenase, membrane binding 277 566 3.7E-146 T 28-03-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 90 317 5.5E-35 T 28-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 266 278 2.5E-27 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 287 302 2.5E-27 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 118 131 2.5E-27 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 302 313 2.5E-27 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 142 150 2.5E-27 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 SUPERFAMILY SSF88659 225 323 1.46E-23 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF00140 Sigma-70 factor, region 1.2 56 88 2.9E-11 T 28-03-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 118 131 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 3 328 40.01 T 28-03-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 SUPERFAMILY SSF88946 56 164 2.75E-45 T 28-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 SUPERFAMILY SSF88659 167 241 8.72E-15 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 287 313 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Gene3D G3DSA:1.10.601.10 2 163 2.7E-59 T 28-03-2018 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF04545 Sigma-70, region 4 262 315 2.7E-15 T 28-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 48 328 4.4E-145 T 28-03-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF04539 Sigma-70 region 3 174 248 1.2E-20 T 28-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF04542 Sigma-70 region 2 94 163 3.6E-21 T 28-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Gene3D G3DSA:1.10.10.10 256 324 4.1E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10145 7c19736d8895724e9657e5cf36aa484c 330 Gene3D G3DSA:1.10.10.10 164 214 1.6E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SUPERFAMILY SSF50249 638 723 1.14E-24 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Pfam PF09371 Tex-like protein N-terminal domain 10 193 5.2E-69 T 28-03-2018 IPR018974 Tex-like protein, N-terminal AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SMART SM00316 649 720 6.8E-26 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Gene3D G3DSA:1.10.10.650 3 102 1.6E-32 T 28-03-2018 IPR023319 Tex-like protein, HTH domain AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Pfam PF16921 Tex protein YqgF-like domain 328 451 3.0E-49 T 28-03-2018 IPR032639 Tex protein, YqgF-like domain AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SUPERFAMILY SSF47781 560 632 6.0E-20 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Pfam PF12836 Helix-hairpin-helix motif 491 555 1.6E-28 T 28-03-2018 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SUPERFAMILY SSF158832 2 322 4.71E-120 T 28-03-2018 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SUPERFAMILY SSF47781 470 558 5.0E-28 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SUPERFAMILY SSF53098 323 469 7.21E-48 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Gene3D G3DSA:2.40.50.140 652 753 4.8E-25 T 28-03-2018 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Gene3D G3DSA:1.10.3500.10 103 360 7.3E-77 T 28-03-2018 IPR023323 Tex-like domain AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Gene3D G3DSA:1.10.150.310 499 630 1.2E-44 T 28-03-2018 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Gene3D G3DSA:1.10.3500.10 361 498 1.2E-37 T 28-03-2018 IPR023323 Tex-like domain AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 Pfam PF00575 S1 RNA binding domain 651 720 1.3E-23 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS06995 1c0c3714fbef7aa53d33f47627b42e6b 777 SMART SM00732 327 424 1.6E-35 T 28-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 Gene3D G3DSA:1.20.272.10 208 329 8.3E-23 T 28-03-2018 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 13 201 1.8E-59 T 28-03-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 208 320 6.4E-33 T 28-03-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 Gene3D G3DSA:3.40.50.300 8 165 1.3E-22 T 28-03-2018 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 Pfam PF13177 DNA polymerase III, delta subunit 12 166 2.5E-40 T 28-03-2018 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 SUPERFAMILY SSF52540 1 206 1.97E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 SUPERFAMILY SSF48019 209 328 1.12E-32 T 28-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM348_RS19790 d2d301a99fa1beba8850b1fb5ce82873 334 Gene3D G3DSA:1.10.8.10 169 206 1.8E-14 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:3.40.50.140 1 163 2.3E-51 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 106 119 2.4E-37 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 2.4E-37 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 2.4E-37 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 390 406 2.4E-37 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 2.4E-37 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 323 - T 28-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 758 793 1.6E-12 T 28-03-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 824 862 1.4E-20 T 28-03-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Pfam PF01751 Toprim domain 5 142 1.9E-33 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 709 745 2.9E-11 T 28-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 597 622 8.2E-6 T 28-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SMART SM00436 133 221 1.0E-48 T 28-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SUPERFAMILY SSF57783 809 864 3.06E-22 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SUPERFAMILY SSF57783 704 743 2.89E-7 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 723 55.052 T 28-03-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SUPERFAMILY SSF56712 3 609 7.32E-207 T 28-03-2018 IPR023405 DNA topoisomerase, type IA, core domain AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Pfam PF01131 DNA topoisomerase 157 565 1.6E-127 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:2.20.25.10 809 863 6.8E-30 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:1.10.460.10 467 577 2.4E-30 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SUPERFAMILY SSF57783 744 807 2.04E-19 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SMART SM00437 272 527 5.0E-125 T 28-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 SMART SM00493 3 132 3.2E-35 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 635 8.5E-265 T 28-03-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:2.70.20.10 347 466 1.2E-38 T 28-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:1.10.460.10 164 346 2.5E-46 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:3.30.65.10 745 807 1.8E-9 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:3.30.65.10 578 645 2.1E-11 T 28-03-2018 AM348_RS16465 d59d2e3068adfedf9e59f6e596688a29 865 Gene3D G3DSA:3.30.65.10 696 744 1.6E-9 T 28-03-2018 AM348_RS11965 c43144336df3eed839a5110877653e4a 291 Gene3D G3DSA:1.10.3720.10 18 282 2.1E-39 T 28-03-2018 AM348_RS11965 c43144336df3eed839a5110877653e4a 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 12 275 9.2E-114 T 28-03-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AM348_RS11965 c43144336df3eed839a5110877653e4a 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 275 3.1E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS11965 c43144336df3eed839a5110877653e4a 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 276 3.5E-112 T 28-03-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 AM348_RS11965 c43144336df3eed839a5110877653e4a 291 SUPERFAMILY SSF161098 28 267 5.89E-52 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 Gene3D G3DSA:3.40.190.10 178 266 9.9E-27 T 28-03-2018 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 3.6E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 Gene3D G3DSA:1.10.10.10 3 86 2.9E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 Pfam PF03466 LysR substrate binding domain 90 293 2.8E-44 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 Gene3D G3DSA:3.40.190.10 93 177 2.3E-19 T 28-03-2018 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 SUPERFAMILY SSF53850 88 298 6.33E-49 T 28-03-2018 AM348_RS17270 57a64ad02d00b3d99d7e3581e17131e5 309 SUPERFAMILY SSF46785 7 87 2.34E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 376 398 8.0E-6 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 619 633 8.0E-6 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 Gene3D G3DSA:3.20.20.70 2 369 4.6E-109 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 646 7.5E-24 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 497 515 7.8E-12 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 377 396 7.8E-12 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 618 634 7.8E-12 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 Gene3D G3DSA:3.50.50.60 484 625 1.6E-34 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 SUPERFAMILY SSF51395 1 362 6.2E-108 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 SUPERFAMILY SSF51905 468 627 4.2E-27 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 Gene3D G3DSA:3.50.50.60 375 483 9.9E-20 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 SUPERFAMILY SSF51971 333 518 1.09E-40 T 28-03-2018 AM348_RS08465 77c7e3cc7cefffe0263ed74d6f8d286b 672 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 331 4.6E-99 T 28-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 4 663 0.0 T 28-03-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 Gene3D G3DSA:3.40.50.970 1 363 6.7E-126 T 28-03-2018 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 SUPERFAMILY SSF52518 4 320 1.5E-120 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 ProSitePatterns PS00802 Transketolase signature 2. 466 482 - T 28-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 Pfam PF02779 Transketolase, pyrimidine binding domain 353 523 7.6E-46 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 SUPERFAMILY SSF52922 532 663 3.14E-42 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 SMART SM00861 354 524 2.2E-66 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 Pfam PF02780 Transketolase, C-terminal domain 548 654 1.3E-18 T 28-03-2018 IPR033248 Transketolase, C-terminal domain AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 Gene3D G3DSA:3.40.50.970 364 539 4.9E-41 T 28-03-2018 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 SUPERFAMILY SSF52518 333 525 1.4E-68 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 Gene3D G3DSA:3.40.50.920 540 664 9.3E-32 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 ProSitePatterns PS00801 Transketolase signature 1. 11 31 - T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS11815 115b462b788897af7b6aa97e57b7658f 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 3 333 4.7E-171 T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.138 T 28-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 1.1E-239 T 28-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Gene3D G3DSA:3.40.50.300 2 74 5.6E-11 T 28-03-2018 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.2E-17 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 SUPERFAMILY SSF50465 298 393 3.17E-36 T 28-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 200 5.6E-58 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 7.9E-34 T 28-03-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Gene3D G3DSA:3.40.50.300 75 203 9.6E-31 T 28-03-2018 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.5E-14 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Gene3D G3DSA:2.40.30.10 300 393 4.4E-33 T 28-03-2018 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 Gene3D G3DSA:2.40.30.10 206 299 9.6E-33 T 28-03-2018 AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 SUPERFAMILY SSF52540 6 219 2.06E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04015 6b9bb46a45022bef3db4eec84daa0fcf 394 SUPERFAMILY SSF50447 205 301 2.16E-30 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.683 T 28-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 Gene3D G3DSA:1.10.8.50 1 66 5.3E-21 T 28-03-2018 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 SUPERFAMILY SSF46946 2 114 1.77E-45 T 28-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 2.1E-34 T 28-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 Gene3D G3DSA:4.10.910.10 67 84 1.5E-18 T 28-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 PIRSF PIRSF002134 1 118 1.6E-41 T 28-03-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 Gene3D G3DSA:4.10.910.10 85 118 1.4E-26 T 28-03-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 28-03-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07450 e41fadd125fd2bfb4cc7f9fbf73a584c 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.0E-53 T 28-03-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 Gene3D G3DSA:3.40.50.2300 56 174 5.4E-31 T 28-03-2018 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 Gene3D G3DSA:1.10.260.40 2 55 1.6E-20 T 28-03-2018 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 SUPERFAMILY SSF53822 60 330 1.45E-85 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 Pfam PF13377 Periplasmic binding protein-like domain 168 329 9.3E-37 T 28-03-2018 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 SMART SM00354 1 71 3.5E-36 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 SUPERFAMILY SSF47413 1 59 3.3E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-7 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-7 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.1E-20 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09700 1099536fe43ec92bfa027e4b7c8f08a2 342 Gene3D G3DSA:3.40.50.2300 175 334 9.0E-44 T 28-03-2018 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 452 606 6.2E-45 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Pfam PF00672 HAMP domain 338 387 1.1E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Gene3D G3DSA:1.10.287.950 336 447 3.4E-13 T 28-03-2018 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Gene3D G3DSA:1.10.287.950 448 644 9.6E-45 T 28-03-2018 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Pfam PF02743 Cache domain 48 259 5.5E-23 T 28-03-2018 IPR033479 Double Cache domain 1 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Gene3D G3DSA:3.30.450.20 76 188 5.0E-15 T 28-03-2018 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 414 443 4.0E-52 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 314 334 4.0E-52 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 491 518 4.0E-52 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 520 549 4.0E-52 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 568 597 4.0E-52 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 Gene3D G3DSA:3.30.450.20 189 316 1.1E-18 T 28-03-2018 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 SMART SM00304 338 392 2.2E-10 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 SUPERFAMILY SSF58104 360 641 3.92E-68 T 28-03-2018 AM348_RS17505 2d9e229d875fd2cc0bdd13d8c88ef17c 647 SMART SM00283 393 640 1.3E-71 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS23615 87d383267908b009d232cc87051522fe 434 Gene3D G3DSA:1.20.1250.20 228 431 4.8E-24 T 28-03-2018 AM348_RS23615 87d383267908b009d232cc87051522fe 434 SUPERFAMILY SSF103473 9 419 1.29E-73 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS23615 87d383267908b009d232cc87051522fe 434 PIRSF PIRSF002808 2 433 3.9E-121 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS23615 87d383267908b009d232cc87051522fe 434 Pfam PF07690 Major Facilitator Superfamily 25 385 2.1E-45 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS23615 87d383267908b009d232cc87051522fe 434 Gene3D G3DSA:1.20.1250.20 8 208 9.8E-33 T 28-03-2018 AM348_RS01815 dc62241793a16c237ace31d132d97031 357 Gene3D G3DSA:3.40.1090.10 17 229 7.6E-28 T 28-03-2018 AM348_RS01815 dc62241793a16c237ace31d132d97031 357 Pfam PF01734 Patatin-like phospholipase 27 195 2.1E-19 T 28-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AM348_RS01815 dc62241793a16c237ace31d132d97031 357 SUPERFAMILY SSF52151 22 279 2.88E-41 T 28-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 Pfam PF14489 QueF-like protein 196 270 3.3E-27 T 28-03-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 PIRSF PIRSF004750 6 282 2.6E-129 T 28-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 TIGRFAM TIGR03138 QueF: queuine synthase 10 282 3.7E-128 T 28-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 282 166.827 T 28-03-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 8.2E-49 T 28-03-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 SUPERFAMILY SSF55620 186 270 1.78E-10 T 28-03-2018 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 Gene3D G3DSA:3.30.1130.10 21 136 3.7E-39 T 28-03-2018 AM348_RS09935 31817ac5b948ec25e702d8a2455b5d69 282 Gene3D G3DSA:3.30.1130.10 144 282 8.6E-48 T 28-03-2018 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 1 657 71.539 T 28-03-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 Gene3D G3DSA:2.60.40.1180 573 657 1.6E-7 T 28-03-2018 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 Pfam PF00128 Alpha amylase, catalytic domain 185 357 6.1E-9 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 SUPERFAMILY SSF51445 130 463 5.87E-127 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 SUPERFAMILY SSF51445 492 565 5.87E-127 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 627 2.3E-262 T 28-03-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 Gene3D G3DSA:2.60.40.10 1 133 4.7E-40 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 12 97 4.8E-17 T 28-03-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 Gene3D G3DSA:3.20.20.80 134 572 1.1E-106 T 28-03-2018 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 SMART SM00642 182 558 1.7E-7 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS06900 3f4f70a8650533beb5314f47476986fc 658 SUPERFAMILY SSF81296 7 144 2.77E-43 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS00320 d86ef6c7d9cef9a26ada1935e4526829 393 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 3 387 5.0E-119 T 28-03-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM348_RS00320 d86ef6c7d9cef9a26ada1935e4526829 393 SUPERFAMILY SSF53383 2 388 5.03E-94 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS00320 d86ef6c7d9cef9a26ada1935e4526829 393 Gene3D G3DSA:3.90.1150.10 280 388 9.8E-21 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS00320 d86ef6c7d9cef9a26ada1935e4526829 393 Pfam PF00155 Aminotransferase class I and II 42 384 6.6E-39 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS00320 d86ef6c7d9cef9a26ada1935e4526829 393 Gene3D G3DSA:3.40.640.10 43 279 8.5E-38 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS20475 3ea8894b81bd533548bea782cc34d8e9 219 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 213 1.2E-41 T 28-03-2018 IPR006214 Bax inhibitor 1-related AM348_RS20475 3ea8894b81bd533548bea782cc34d8e9 219 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 87 117 - T 28-03-2018 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 AM348_RS21230 27956723e12167f34739df451f93a661 716 Pfam PF13307 Helicase C-terminal domain 531 688 3.2E-25 T 28-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM348_RS21230 27956723e12167f34739df451f93a661 716 Gene3D G3DSA:3.40.50.300 24 483 4.0E-27 T 28-03-2018 AM348_RS21230 27956723e12167f34739df451f93a661 716 SMART SM00491 544 676 2.3E-37 T 28-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM348_RS21230 27956723e12167f34739df451f93a661 716 SUPERFAMILY SSF52540 199 271 1.28E-17 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21230 27956723e12167f34739df451f93a661 716 SUPERFAMILY SSF52540 46 97 1.28E-17 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21230 27956723e12167f34739df451f93a661 716 SUPERFAMILY SSF52540 451 465 1.28E-17 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21230 27956723e12167f34739df451f93a661 716 SUPERFAMILY SSF52540 500 670 1.28E-17 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21230 27956723e12167f34739df451f93a661 716 SMART SM00488 18 303 0.0038 T 28-03-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 AM348_RS21230 27956723e12167f34739df451f93a661 716 Gene3D G3DSA:3.40.50.300 503 686 3.4E-5 T 28-03-2018 AM348_RS21230 27956723e12167f34739df451f93a661 716 SMART SM00487 23 290 1.7E-4 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS21230 27956723e12167f34739df451f93a661 716 Pfam PF06733 DEAD_2 197 264 9.8E-8 T 28-03-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 AM348_RS21230 27956723e12167f34739df451f93a661 716 Pfam PF00270 DEAD/DEAH box helicase 31 94 2.2E-5 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 545 3.2E-32 T 28-03-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 Gene3D G3DSA:1.10.390.10 280 443 4.3E-51 T 28-03-2018 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 Gene3D G3DSA:1.25.50.10 546 870 1.4E-123 T 28-03-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 SUPERFAMILY SSF55486 204 450 1.68E-74 T 28-03-2018 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 Pfam PF01433 Peptidase family M1 domain 208 439 9.1E-60 T 28-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 28-03-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 1.1E-8 T 28-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 1.1E-8 T 28-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 1.1E-8 T 28-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 1.1E-8 T 28-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 1.1E-8 T 28-03-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 SUPERFAMILY SSF63737 1 193 3.53E-45 T 28-03-2018 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 Gene3D G3DSA:2.60.40.1730 15 194 3.0E-31 T 28-03-2018 AM348_RS20635 d78ddd395321d1f6ed895836515c841c 870 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 1.5E-119 T 28-03-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal AM348_RS18465 5c543f1b6a6533a6566670f3cde38ac4 334 Gene3D G3DSA:1.10.3470.10 4 334 7.3E-73 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS18465 5c543f1b6a6533a6566670f3cde38ac4 334 SUPERFAMILY SSF81345 6 327 9.29E-76 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS18465 5c543f1b6a6533a6566670f3cde38ac4 334 Pfam PF01032 FecCD transport family 18 327 1.4E-88 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS00115 f2f4ec3ba33b38903ac1e2b17937d264 293 SUPERFAMILY SSF51621 7 290 2.65E-97 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS00115 f2f4ec3ba33b38903ac1e2b17937d264 293 Gene3D G3DSA:3.20.20.60 2 293 9.6E-90 T 28-03-2018 AM348_RS00115 f2f4ec3ba33b38903ac1e2b17937d264 293 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 4 292 50.466 T 28-03-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AM348_RS00115 f2f4ec3ba33b38903ac1e2b17937d264 293 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 28-03-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 AM348_RS00115 f2f4ec3ba33b38903ac1e2b17937d264 293 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 7 291 1.4E-135 T 28-03-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 AM348_RS00115 f2f4ec3ba33b38903ac1e2b17937d264 293 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 250 8.1E-49 T 28-03-2018 AM348_RS07340 d30318d044093b5de161d2c114258b9a 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 40.27 T 28-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07340 d30318d044093b5de161d2c114258b9a 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 28-03-2018 IPR019926 Ribosomal protein L3, conserved site AM348_RS07340 d30318d044093b5de161d2c114258b9a 209 Pfam PF00297 Ribosomal protein L3 34 182 5.9E-14 T 28-03-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07340 d30318d044093b5de161d2c114258b9a 209 SUPERFAMILY SSF50447 1 208 9.71E-80 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS07340 d30318d044093b5de161d2c114258b9a 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 2.1E-91 T 28-03-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07340 d30318d044093b5de161d2c114258b9a 209 Gene3D G3DSA:4.10.960.10 57 165 2.9E-35 T 28-03-2018 AM348_RS10160 5f456e445ff564ce5a911da745516715 475 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 441 4.4E-126 T 28-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM348_RS10160 5f456e445ff564ce5a911da745516715 475 Gene3D G3DSA:3.40.1670.10 311 453 1.3E-32 T 28-03-2018 AM348_RS10160 5f456e445ff564ce5a911da745516715 475 SUPERFAMILY SSF50475 3 309 2.71E-82 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS10160 5f456e445ff564ce5a911da745516715 475 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 416 6.9E-106 T 28-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM348_RS10160 5f456e445ff564ce5a911da745516715 475 Hamap MF_01985 Phenolic acid decarboxylase subunit C. 1 472 70.822 T 28-03-2018 IPR032902 Phenolic acid decarboxylase subunit C GO:0016831 KEGG: 00627+4.1.1.61 AM348_RS10160 5f456e445ff564ce5a911da745516715 475 SUPERFAMILY SSF143968 312 467 4.84E-41 T 28-03-2018 AM348_RS00010 b4f25b74101039a0119b2e91b1c31e3e 403 Gene3D G3DSA:1.20.1250.20 201 395 2.1E-19 T 28-03-2018 AM348_RS00010 b4f25b74101039a0119b2e91b1c31e3e 403 SUPERFAMILY SSF103473 4 395 1.1E-66 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00010 b4f25b74101039a0119b2e91b1c31e3e 403 Pfam PF07690 Major Facilitator Superfamily 19 300 2.4E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS00010 b4f25b74101039a0119b2e91b1c31e3e 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 68 84 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS00010 b4f25b74101039a0119b2e91b1c31e3e 403 Gene3D G3DSA:1.20.1250.20 8 200 1.4E-31 T 28-03-2018 AM348_RS00010 b4f25b74101039a0119b2e91b1c31e3e 403 ProSitePatterns PS00217 Sugar transport proteins signature 2. 110 135 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 SUPERFAMILY SSF53850 90 297 7.06E-48 T 28-03-2018 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.1E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.1E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.1E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.0E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 Gene3D G3DSA:1.10.10.10 3 81 5.4E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 Gene3D G3DSA:3.40.190.10 89 177 2.4E-14 T 28-03-2018 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 Gene3D G3DSA:3.40.190.10 178 265 7.9E-25 T 28-03-2018 AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 Pfam PF03466 LysR substrate binding domain 89 292 2.4E-45 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS06390 b53225fc830f0c1ada8e477671415f12 299 SUPERFAMILY SSF46785 4 84 2.93E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17060 b8b2f30dee4fa8d7dfade4d86bc49ff8 302 Pfam PF00892 EamA-like transporter family 150 285 5.8E-14 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS17060 b8b2f30dee4fa8d7dfade4d86bc49ff8 302 Pfam PF00892 EamA-like transporter family 4 134 4.1E-11 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS17060 b8b2f30dee4fa8d7dfade4d86bc49ff8 302 SUPERFAMILY SSF103481 191 287 2.09E-10 T 28-03-2018 AM348_RS17060 b8b2f30dee4fa8d7dfade4d86bc49ff8 302 SUPERFAMILY SSF103481 35 137 3.53E-14 T 28-03-2018 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 SMART SM00342 214 297 1.4E-25 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 8.1E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 8.1E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 Gene3D G3DSA:2.60.120.10 32 257 9.5E-17 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 Pfam PF12833 Helix-turn-helix domain 220 298 8.2E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 SUPERFAMILY SSF47454 136 193 1.54E-7 T 28-03-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain GO:0003677|GO:0006355 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 SUPERFAMILY SSF46689 250 299 2.55E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 SUPERFAMILY SSF51182 20 113 6.68E-6 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS10835 9193c6a6b72269928dadfa4be38fd895 312 Gene3D G3DSA:1.10.10.60 258 310 2.4E-13 T 28-03-2018 AM348_RS03745 c93138ef04286fab5dab32deb070ce31 407 SUPERFAMILY SSF50129 3 190 1.32E-24 T 28-03-2018 IPR011032 GroES-like AM348_RS03745 c93138ef04286fab5dab32deb070ce31 407 Gene3D G3DSA:3.40.50.720 189 339 6.4E-4 T 28-03-2018 AM348_RS03745 c93138ef04286fab5dab32deb070ce31 407 SUPERFAMILY SSF51735 170 331 4.81E-15 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03745 c93138ef04286fab5dab32deb070ce31 407 Gene3D G3DSA:3.90.180.10 1 188 3.1E-23 T 28-03-2018 AM348_RS03745 c93138ef04286fab5dab32deb070ce31 407 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 99 7.7E-6 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS03745 c93138ef04286fab5dab32deb070ce31 407 Pfam PF00107 Zinc-binding dehydrogenase 188 326 3.6E-11 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 SUPERFAMILY SSF51430 1 321 8.38E-102 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 PRINTS PR00069 Aldo-keto reductase signature 47 71 2.4E-6 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 PRINTS PR00069 Aldo-keto reductase signature 142 159 2.4E-6 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 PRINTS PR00069 Aldo-keto reductase signature 111 129 2.4E-6 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 PRINTS PR00069 Aldo-keto reductase signature 230 254 2.4E-6 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 Pfam PF00248 Aldo/keto reductase family 15 312 1.1E-74 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS23300 690f0636c6b043ca00c16e6e202d2b74 324 Gene3D G3DSA:3.20.20.100 1 321 1.7E-99 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 SUPERFAMILY SSF56801 32 577 4.06E-157 T 28-03-2018 AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 Gene3D G3DSA:3.40.50.980 239 393 8.6E-39 T 28-03-2018 AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 Pfam PF00501 AMP-binding enzyme 51 482 2.2E-115 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 ProSitePatterns PS00455 Putative AMP-binding domain signature. 233 244 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 Pfam PF13193 AMP-binding enzyme C-terminal domain 491 565 1.5E-17 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 Gene3D G3DSA:3.30.300.30 477 582 7.6E-28 T 28-03-2018 AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 Gene3D G3DSA:2.30.38.10 394 475 2.1E-30 T 28-03-2018 AM348_RS15445 1bd214c13010fdd4a4fa2f198c0c4640 583 Gene3D G3DSA:3.40.50.980 42 238 5.5E-44 T 28-03-2018 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 2.0E-40 T 28-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 PIRSF PIRSF003095 1 432 1.2E-129 T 28-03-2018 IPR005215 Trigger factor GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 232 7.8E-15 T 28-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 2.7E-41 T 28-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 Hamap MF_00303 Trigger factor [tig]. 1 418 22.024 T 28-03-2018 IPR005215 Trigger factor GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 Gene3D G3DSA:3.30.70.1050 1 118 2.3E-34 T 28-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 Gene3D G3DSA:1.10.3120.10 211 389 8.0E-47 T 28-03-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 SUPERFAMILY SSF102735 1 131 4.84E-39 T 28-03-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 SUPERFAMILY SSF109998 248 429 1.44E-47 T 28-03-2018 IPR027304 Trigger factor/SurA domain AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 SUPERFAMILY SSF54534 96 241 1.14E-37 T 28-03-2018 AM348_RS23210 6984e57f40f3f8310cc6336ea01cb20d 432 TIGRFAM TIGR00115 tig: trigger factor 13 412 7.0E-142 T 28-03-2018 IPR005215 Trigger factor GO:0015031 AM348_RS19390 31d6f425ffeb209854cd0ea9b6c7af76 213 Pfam PF04356 Protein of unknown function (DUF489) 7 199 3.7E-74 T 28-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM348_RS19390 31d6f425ffeb209854cd0ea9b6c7af76 213 Gene3D G3DSA:1.10.3890.10 4 207 4.9E-79 T 28-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM348_RS19390 31d6f425ffeb209854cd0ea9b6c7af76 213 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 205 5.0E-94 T 28-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM348_RS19390 31d6f425ffeb209854cd0ea9b6c7af76 213 SUPERFAMILY SSF101322 2 210 1.1E-80 T 28-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM348_RS19390 31d6f425ffeb209854cd0ea9b6c7af76 213 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 207 36.272 T 28-03-2018 IPR007451 Uncharacterised protein family UPF0274 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 1.7E-14 T 28-03-2018 IPR000014 PAS domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 PIRSF PIRSF003182 1 778 0.0 T 28-03-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SMART SM00091 155 221 2.5E-7 T 28-03-2018 IPR000014 PAS domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SMART SM00388 282 347 5.4E-19 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Pfam PF00989 PAS fold 156 266 5.1E-18 T 28-03-2018 IPR013767 PAS fold GO:0006355 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Gene3D G3DSA:3.30.565.10 342 506 1.8E-43 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SUPERFAMILY SSF55874 336 503 2.88E-41 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SMART SM00073 675 772 2.3E-20 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 504 2.3E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Gene3D G3DSA:3.30.450.20 102 279 8.2E-25 T 28-03-2018 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Gene3D G3DSA:1.10.287.970 3 88 2.0E-39 T 28-03-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Pfam PF00072 Response regulator receiver domain 528 639 2.9E-21 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Pfam PF01627 Hpt domain 686 758 8.5E-11 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 1.5E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 1.5E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 1.5E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 1.5E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Gene3D G3DSA:1.10.287.130 280 341 1.5E-17 T 28-03-2018 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SMART SM00448 526 639 4.2E-25 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Gene3D G3DSA:3.40.50.2300 515 645 2.7E-30 T 28-03-2018 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 346 2.4E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SMART SM00387 394 507 8.0E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SUPERFAMILY SSF47384 269 347 3.73E-17 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SUPERFAMILY SSF52172 526 653 1.01E-27 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SUPERFAMILY SSF55785 140 267 6.46E-21 T 28-03-2018 IPR000014 PAS domain AM348_RS07900 cb763e01b43775555592af64bd660c85 778 Gene3D G3DSA:1.20.120.160 646 763 4.2E-18 T 28-03-2018 AM348_RS07900 cb763e01b43775555592af64bd660c85 778 SUPERFAMILY SSF47226 661 774 3.27E-28 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 45.114 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 28-03-2018 IPR018215 ClpP, Ser active site AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 2.6E-112 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 Gene3D G3DSA:3.90.226.10 15 207 8.0E-48 T 28-03-2018 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 1.2E-54 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 1.2E-54 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 1.2E-54 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 1.2E-54 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 1.2E-54 T 28-03-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 SUPERFAMILY SSF52096 23 206 5.14E-76 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 Pfam PF00574 Clp protease 26 205 6.2E-90 T 28-03-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA AM348_RS23205 ce76245fbaf308d810552cd3abda2764 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 28-03-2018 IPR033135 ClpP, histidine active site AM348_RS13905 4281455451b741c05ea7d7e495506a7c 274 Gene3D G3DSA:3.40.50.720 1 128 2.3E-15 T 28-03-2018 AM348_RS13905 4281455451b741c05ea7d7e495506a7c 274 Gene3D G3DSA:3.90.25.10 147 267 0.0018 T 28-03-2018 AM348_RS13905 4281455451b741c05ea7d7e495506a7c 274 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 213 4.5E-9 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS13905 4281455451b741c05ea7d7e495506a7c 274 SUPERFAMILY SSF51735 2 266 1.6E-28 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04945 b180b2079008f417354becea7da8260c 393 Gene3D G3DSA:3.90.20.10 32 131 8.9E-4 T 28-03-2018 AM348_RS04945 b180b2079008f417354becea7da8260c 393 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 35 363 3.6E-133 T 28-03-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX AM348_RS05770 9e00b02a0f36fd9a99c96ae109f23aac 569 Pfam PF05170 AsmA family 1 540 3.0E-26 T 28-03-2018 IPR007844 AsmA AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 Gene3D G3DSA:1.10.3080.10 16 461 1.1E-105 T 28-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 Pfam PF00654 Voltage gated chloride channel 89 437 8.4E-91 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 SUPERFAMILY SSF81340 16 453 1.83E-110 T 28-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 Hamap MF_01128 H(+)/Cl(-) exchange transporter ClcA [clcA]. 3 469 52.86 T 28-03-2018 IPR023861 Chloride channel, ClcA GO:0005887|GO:0006821|GO:0015108 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 PRINTS PR00762 Chloride channel signature 352 372 9.0E-29 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 PRINTS PR00762 Chloride channel signature 405 424 9.0E-29 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 PRINTS PR00762 Chloride channel signature 102 119 9.0E-29 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 PRINTS PR00762 Chloride channel signature 183 202 9.0E-29 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS00840 1b2e7999cd7ba2d231b802f01448641f 473 PRINTS PR00762 Chloride channel signature 387 403 9.0E-29 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS08575 f83b274f1e5bbafd27d6bc9682b3e356 555 SUPERFAMILY SSF51703 1 554 2.2E-293 T 28-03-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS08575 f83b274f1e5bbafd27d6bc9682b3e356 555 PIRSF PIRSF018507 2 555 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS08575 f83b274f1e5bbafd27d6bc9682b3e356 555 Pfam PF02286 Dehydratase large subunit 3 551 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS08575 f83b274f1e5bbafd27d6bc9682b3e356 555 Gene3D G3DSA:3.20.20.350 3 554 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS08575 f83b274f1e5bbafd27d6bc9682b3e356 555 ProDom PD025428 SUBUNIT GLYCEROL DEHYDRATASE LARGE LYASE DHAB ALPHA DIOL B12-DEPENDENT METABOLISM 9 550 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 Pfam PF01381 Helix-turn-helix 12 64 3.3E-13 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 Pfam PF07883 Cupin domain 105 171 5.5E-8 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 Gene3D G3DSA:1.10.260.40 1 74 6.8E-15 T 28-03-2018 AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 Gene3D G3DSA:2.60.120.10 84 178 1.7E-10 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 SUPERFAMILY SSF47413 3 72 2.2E-17 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 SMART SM00530 11 66 4.0E-13 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17075 c2c0763dea7718a6480664f476fbab6d 178 SUPERFAMILY SSF51182 51 176 3.05E-23 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS00070 0f61ea210f30b289cd69dd438372a0e1 258 Gene3D G3DSA:3.60.15.10 1 258 9.3E-21 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00070 0f61ea210f30b289cd69dd438372a0e1 258 SUPERFAMILY SSF56281 1 231 1.04E-18 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00070 0f61ea210f30b289cd69dd438372a0e1 258 Pfam PF12706 Beta-lactamase superfamily domain 20 221 1.3E-10 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS14685 1828448d99aaeb1b6b8c857fb8113e43 241 Pfam PF03374 Phage antirepressor protein KilAC domain 134 233 4.8E-28 T 28-03-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 AM348_RS14685 1828448d99aaeb1b6b8c857fb8113e43 241 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 24 104 1.9E-17 T 28-03-2018 IPR014054 Bacteriophage regulatory protein, Rha family AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Gene3D G3DSA:3.90.1150.10 413 592 1.3E-54 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 568 697 3.6E-46 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 SUPERFAMILY SSF53383 101 559 1.93E-121 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Gene3D G3DSA:3.40.50.220 3 100 1.4E-25 T 28-03-2018 IPR027464 Ornithine decarboxylase, N-terminal domain KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Gene3D G3DSA:3.90.100.10 593 711 5.2E-34 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 SUPERFAMILY SSF55904 563 711 2.75E-44 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 SUPERFAMILY SSF52172 1 100 4.82E-26 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 101 543 2.3E-199 T 28-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 PIRSF PIRSF009393 2 711 1.6E-286 T 28-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Gene3D G3DSA:3.40.640.10 101 412 2.4E-36 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 342 356 - T 28-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM348_RS09170 c69951b3a4ea1e79a99866d835ef35ca 711 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 75 1.3E-14 T 28-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM348_RS23585 a862f449325abb0903b73ee2b07e480e 283 SUPERFAMILY SSF51197 5 281 4.17E-97 T 28-03-2018 AM348_RS23585 a862f449325abb0903b73ee2b07e480e 283 Gene3D G3DSA:3.60.130.10 1 283 1.3E-84 T 28-03-2018 AM348_RS23585 a862f449325abb0903b73ee2b07e480e 283 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 7 272 4.2E-66 T 28-03-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 Pfam PF00155 Aminotransferase class I and II 142 450 1.0E-26 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 SUPERFAMILY SSF53383 96 461 3.13E-77 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 64 1.4E-7 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 80 1.4E-7 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 SMART SM00345 31 90 1.2E-15 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 SUPERFAMILY SSF46785 21 98 4.39E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 Gene3D G3DSA:3.90.1150.10 367 462 1.7E-14 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 Gene3D G3DSA:3.40.640.10 119 366 1.8E-42 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 Gene3D G3DSA:1.10.10.10 17 91 2.6E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23085 668a9e890c7885837e70ae24e225c19b 475 Pfam PF00392 Bacterial regulatory proteins, gntR family 30 90 2.6E-15 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 28-03-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 Gene3D G3DSA:3.40.50.720 196 377 1.0E-57 T 28-03-2018 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 Gene3D G3DSA:3.40.50.720 1 195 3.3E-51 T 28-03-2018 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 SMART SM01002 146 311 3.3E-85 T 28-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 SUPERFAMILY SSF51735 137 317 7.24E-38 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 509 0.0 T 28-03-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 SMART SM01003 4 137 1.4E-76 T 28-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 1.5E-76 T 28-03-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 426 508 9.0E-36 T 28-03-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 PIRSF PIRSF000203 1 508 4.6E-284 T 28-03-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 6.3E-52 T 28-03-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 SUPERFAMILY SSF52283 1 168 2.3E-57 T 28-03-2018 AM348_RS17975 44fe8eea3ce7abf649d4ea1fc2201898 509 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 28-03-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 28-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 SUPERFAMILY SSF55816 363 542 3.4E-51 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 SUPERFAMILY SSF56300 27 361 2.3E-92 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 Pfam PF00149 Calcineurin-like phosphoesterase 35 254 1.4E-16 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 Gene3D G3DSA:3.60.21.10 26 362 4.5E-81 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 PRINTS PR01607 Apyrase family signature 207 224 1.5E-63 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 PRINTS PR01607 Apyrase family signature 32 50 1.5E-63 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 PRINTS PR01607 Apyrase family signature 417 440 1.5E-63 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 PRINTS PR01607 Apyrase family signature 283 303 1.5E-63 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 PRINTS PR01607 Apyrase family signature 484 503 1.5E-63 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 PRINTS PR01607 Apyrase family signature 238 261 1.5E-63 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 507 1.8E-30 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 ProSitePatterns PS00785 5'-nucleotidase signature 1. 34 46 - T 28-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS22925 bd47f08024f3ffd35aa0c06c50d1e8be 550 Gene3D G3DSA:3.90.780.10 363 549 9.0E-46 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 Gene3D G3DSA:3.20.20.70 1 284 1.5E-102 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 5.7E-151 T 28-03-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 PIRSF PIRSF001359 1 284 2.4E-113 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 283 8.1E-98 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 SUPERFAMILY SSF51569 3 283 1.04E-97 T 28-03-2018 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 2 283 1.6E-103 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS08265 d501cc6eff3e6840320eb1f4e64bdf87 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS07365 4123efaf3d1822c6b1617e3be1bd5fd2 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 4.3E-51 T 28-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07365 4123efaf3d1822c6b1617e3be1bd5fd2 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 28-03-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07365 4123efaf3d1822c6b1617e3be1bd5fd2 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 1.2E-37 T 28-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AM348_RS07365 4123efaf3d1822c6b1617e3be1bd5fd2 110 SUPERFAMILY SSF54843 1 109 6.67E-43 T 28-03-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 AM348_RS07365 4123efaf3d1822c6b1617e3be1bd5fd2 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.058 T 28-03-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07365 4123efaf3d1822c6b1617e3be1bd5fd2 110 Gene3D G3DSA:3.90.470.10 1 110 4.2E-43 T 28-03-2018 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 Gene3D G3DSA:1.25.40.10 20 294 3.5E-50 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 SMART SM00028 96 129 2.0E-4 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 SMART SM00028 62 95 0.0033 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 SMART SM00028 234 267 15.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 28-03-2018 IPR013105 Tetratricopeptide repeat 2 AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 PIRSF PIRSF004654 1 292 2.1E-121 T 28-03-2018 IPR023605 Lipoprotein NlpI AM348_RS08150 e39f5bd4a18e38ab68fd3e14d07e776c 294 SUPERFAMILY SSF48452 27 283 5.82E-78 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 SUPERFAMILY SSF53223 4 106 1.84E-29 T 28-03-2018 AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 Gene3D G3DSA:3.40.50.10860 1 116 2.9E-37 T 28-03-2018 AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 Gene3D G3DSA:3.40.50.720 117 287 1.2E-33 T 28-03-2018 AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 94 7.1E-26 T 28-03-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 Hamap MF_01578 Quinate/shikimate dehydrogenase [ydiB]. 1 288 76.324 T 28-03-2018 IPR022872 Quinate/Shikimate dehydrogenase GO:0004764|GO:0030266|GO:0052733|GO:0052734|GO:0055114 KEGG: 00400+1.1.1.282|KEGG: 00620+1.1.1.28|MetaCyc: PWY-6163|MetaCyc: PWY-6454|MetaCyc: PWY-6901 AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 SUPERFAMILY SSF51735 107 284 2.21E-39 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18725 461bf549e2c3a5f51926990222f2af1b 288 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 7 286 31.068 T 28-03-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 Pfam PF00480 ROK family 89 392 5.7E-97 T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 Gene3D G3DSA:1.10.10.10 20 71 3.7E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 Gene3D G3DSA:3.30.420.40 210 402 2.1E-46 T 28-03-2018 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 ProSitePatterns PS01125 ROK family signature. 220 247 - T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 Pfam PF01047 MarR family 25 63 1.0E-7 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 SUPERFAMILY SSF53067 88 394 6.74E-54 T 28-03-2018 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 Gene3D G3DSA:3.30.420.40 72 209 2.8E-19 T 28-03-2018 AM348_RS21960 018b5fa4ec39c143e558d61ceb2ae993 406 SUPERFAMILY SSF46785 14 79 2.31E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 118 241 6.5E-9 T 28-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 SUPERFAMILY SSF55945 1 97 8.16E-27 T 28-03-2018 AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 SMART SM01009 1 112 6.8E-49 T 28-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 Gene3D G3DSA:1.10.1670.10 242 280 1.1E-12 T 28-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 Gene3D G3DSA:3.30.310.20 1 101 1.4E-31 T 28-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 SUPERFAMILY SSF48150 102 275 1.12E-44 T 28-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 ProSitePatterns PS00516 Alkylbase DNA glycosidases alkA family signature. 214 238 - T 28-03-2018 IPR000035 Alkylbase DNA glycosidase, conserved site GO:0003905|GO:0006281 AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 Gene3D G3DSA:1.10.340.30 102 241 1.1E-24 T 28-03-2018 AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 Pfam PF06029 AlkA N-terminal domain 2 112 1.9E-30 T 28-03-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal AM348_RS13650 9c00b41a813838344ebae992ca199dc5 289 SMART SM00478 130 276 4.1E-25 T 28-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 TIGRFAM TIGR00861 MIP: MIP family channel proteins 11 249 7.0E-67 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 PRINTS PR00783 Major intrinsic protein family signature 182 204 5.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 PRINTS PR00783 Major intrinsic protein family signature 46 70 5.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 PRINTS PR00783 Major intrinsic protein family signature 83 102 5.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 PRINTS PR00783 Major intrinsic protein family signature 232 252 5.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 PRINTS PR00783 Major intrinsic protein family signature 149 167 5.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 PRINTS PR00783 Major intrinsic protein family signature 7 26 5.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 ProSitePatterns PS00221 MIP family signature. 64 72 - T 28-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 Pfam PF00230 Major intrinsic protein 7 249 3.1E-64 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 SUPERFAMILY SSF81338 6 255 1.44E-75 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS14070 d51170847e2fbb66cc059a2240c579da 269 Gene3D G3DSA:1.20.1080.10 1 257 3.4E-76 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS02420 e1ce1f046c577082ab499e7e7d59c3be 150 Pfam PF04074 Domain of unknown function (DUF386) 1 147 5.9E-44 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS02420 e1ce1f046c577082ab499e7e7d59c3be 150 Gene3D G3DSA:2.60.120.370 1 150 2.8E-55 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS02420 e1ce1f046c577082ab499e7e7d59c3be 150 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 149 1.5E-59 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS02420 e1ce1f046c577082ab499e7e7d59c3be 150 SUPERFAMILY SSF51197 1 149 1.79E-43 T 28-03-2018 AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 352 1.2E-177 T 28-03-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 356 56.256 T 28-03-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 SUPERFAMILY SSF51735 2 353 2.14E-90 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 Gene3D G3DSA:3.40.50.720 1 206 1.2E-26 T 28-03-2018 AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 Gene3D G3DSA:3.90.25.10 249 371 1.7E-32 T 28-03-2018 AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 Gene3D G3DSA:3.90.25.10 207 248 1.1E-22 T 28-03-2018 AM348_RS13730 e0a20d970e9b1c0642b1d2d9bc2d79e0 373 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 346 3.1E-161 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SMART SM00304 200 252 1.7E-7 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SUPERFAMILY SSF47384 277 358 3.14E-22 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 177 2.3E-55 T 28-03-2018 IPR019247 Histidine kinase BarA, N-terminal AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Gene3D G3DSA:1.20.120.160 805 918 2.2E-19 T 28-03-2018 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Gene3D G3DSA:1.10.287.130 282 353 2.3E-20 T 28-03-2018 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 498 5.8E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 459 5.8E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 517 5.8E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 473 5.8E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Gene3D G3DSA:3.30.565.10 361 526 9.4E-48 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SMART SM00388 292 357 7.5E-25 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SMART SM00387 404 520 9.1E-38 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SMART SM00448 668 781 1.6E-33 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SUPERFAMILY SSF52172 668 785 2.56E-35 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Gene3D G3DSA:3.40.50.2300 661 800 1.0E-35 T 28-03-2018 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SUPERFAMILY SSF55874 346 517 5.11E-44 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Pfam PF01627 Hpt domain 828 908 4.4E-12 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SMART SM00073 819 914 1.1E-21 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SUPERFAMILY SSF158472 200 249 7.45E-5 T 28-03-2018 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 519 4.0E-32 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SUPERFAMILY SSF47226 764 777 4.45E-22 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 SUPERFAMILY SSF47226 808 909 4.45E-22 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Pfam PF00072 Response regulator receiver domain 670 780 3.1E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS09985 49155e23d554c7e73a7e3ba7665e06cf 918 Pfam PF00512 His Kinase A (phospho-acceptor) domain 293 357 7.9E-20 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12480 d3bc071e185c0713f1939469e4abdb3c 228 Gene3D G3DSA:1.10.3720.10 3 224 3.8E-37 T 28-03-2018 AM348_RS12480 d3bc071e185c0713f1939469e4abdb3c 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 114 4.0E-19 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS12480 d3bc071e185c0713f1939469e4abdb3c 228 SUPERFAMILY SSF161098 7 205 1.96E-37 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS12480 d3bc071e185c0713f1939469e4abdb3c 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 219 2.0E-22 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17260 785359e994f1535579b4950f20e5b89e 257 SUPERFAMILY SSF52540 9 252 7.62E-74 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17260 785359e994f1535579b4950f20e5b89e 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS17260 785359e994f1535579b4950f20e5b89e 257 SMART SM00382 33 230 1.7E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS17260 785359e994f1535579b4950f20e5b89e 257 PIRSF PIRSF039085 5 257 6.8E-105 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS17260 785359e994f1535579b4950f20e5b89e 257 Pfam PF00005 ABC transporter 24 182 2.6E-35 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17260 785359e994f1535579b4950f20e5b89e 257 Gene3D G3DSA:3.40.50.300 6 257 1.0E-75 T 28-03-2018 AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 SUPERFAMILY SSF158472 178 225 2.35E-5 T 28-03-2018 AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 Gene3D G3DSA:3.30.565.10 453 588 3.5E-23 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 SMART SM00304 176 228 2.0E-9 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 Pfam PF07730 Histidine kinase 390 453 2.0E-17 T 28-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 SUPERFAMILY SSF55874 466 583 2.88E-19 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 497 583 3.7E-10 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 35 125 3.4E-10 T 28-03-2018 IPR029095 NarX-like, N-terminal AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 Pfam PF00672 HAMP domain 177 224 3.9E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 SMART SM00387 494 587 5.2E-13 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 Gene3D G3DSA:3.30.450.40 36 390 0.0037 T 28-03-2018 IPR029016 GAF domain-like AM348_RS15860 ab718b552a790d01a5b8504b897a1c5b 598 PIRSF PIRSF003167 1 597 5.7E-192 T 28-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 Gene3D G3DSA:1.10.10.10 1 89 3.0E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 SUPERFAMILY SSF46785 4 114 1.48E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.6E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.6E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.6E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.1E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 Gene3D G3DSA:3.40.190.10 184 266 2.0E-22 T 28-03-2018 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 Gene3D G3DSA:3.40.190.10 93 183 1.3E-21 T 28-03-2018 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 SUPERFAMILY SSF53850 93 298 2.17E-41 T 28-03-2018 AM348_RS09685 c78428ec4f500d0b98706c1987652994 311 Pfam PF03466 LysR substrate binding domain 92 294 8.6E-42 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS12110 dc3f3ea34257384f2a7308136a0386d3 120 Gene3D G3DSA:1.10.10.10 3 65 2.9E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12110 dc3f3ea34257384f2a7308136a0386d3 120 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 6 120 1.0E-49 T 28-03-2018 IPR010749 Protein of unknown function DUF1323 AM348_RS12110 dc3f3ea34257384f2a7308136a0386d3 120 SUPERFAMILY SSF46955 3 50 3.02E-13 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS12110 dc3f3ea34257384f2a7308136a0386d3 120 Pfam PF07037 Putative transcription regulator (DUF1323) 6 118 1.9E-48 T 28-03-2018 IPR010749 Protein of unknown function DUF1323 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Pfam PF01568 Molydopterin dinucleotide binding domain 576 683 4.1E-29 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 435 452 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 53 1.8E-12 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Pfam PF00384 Molybdopterin oxidoreductase 61 488 2.9E-88 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Gene3D G3DSA:3.40.50.740 256 536 1.9E-79 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Gene3D G3DSA:2.40.40.20 537 688 7.9E-38 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 PIRSF PIRSF000144 53 441 1.0E-54 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 PIRSF PIRSF000144 538 693 0.21 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 7 686 1.2E-277 T 28-03-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 SUPERFAMILY SSF50692 566 698 1.78E-43 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Gene3D G3DSA:1.20.5.460 691 713 7.3E-10 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Gene3D G3DSA:3.40.228.10 168 255 6.1E-24 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Gene3D G3DSA:2.20.25.90 1 55 1.2E-15 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 Gene3D G3DSA:3.40.50.740 61 167 5.2E-26 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 SMART SM00926 1 54 1.0E-14 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 SUPERFAMILY SSF53706 1 564 1.28E-191 T 28-03-2018 AM348_RS19270 006935df7477bd0eaf1f93ea11a89c02 715 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 616 643 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 474 6.6E-164 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 1.7E-70 T 28-03-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 PIRSF PIRSF000774 1 477 2.9E-152 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 1.0E-15 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 PRINTS PR00045 Sigma-54 factor signature 186 203 2.0E-31 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 PRINTS PR00045 Sigma-54 factor signature 376 388 2.0E-31 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 PRINTS PR00045 Sigma-54 factor signature 450 468 2.0E-31 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 PRINTS PR00045 Sigma-54 factor signature 392 403 2.0E-31 T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 6.7E-61 T 28-03-2018 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 Gene3D G3DSA:1.10.10.10 323 410 2.9E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS07935 88f8818efb5ef2f7e57623691754c864 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 28-03-2018 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 Gene3D G3DSA:3.30.450.40 230 372 7.8E-8 T 28-03-2018 IPR029016 GAF domain-like AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 Pfam PF06580 Histidine kinase 371 448 1.9E-25 T 28-03-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 Pfam PF07694 5TMR of 5TMR-LYT 28 196 1.4E-58 T 28-03-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 SUPERFAMILY SSF55874 424 557 1.7E-12 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 Pfam PF13185 GAF domain 243 352 5.9E-7 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 SMART SM00065 218 365 4.9E-12 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 Gene3D G3DSA:3.30.565.10 384 558 8.8E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS13360 99a35dc91164ab4b5910d129f5a34026 561 SUPERFAMILY SSF55781 244 359 9.48E-9 T 28-03-2018 IPR029016 GAF domain-like AM348_RS06850 2ba27d74bba6a15c69a1c31db9a0c2eb 231 SUPERFAMILY SSF51182 1 231 2.76E-80 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS06850 2ba27d74bba6a15c69a1c31db9a0c2eb 231 PIRSF PIRSF006232 1 230 2.3E-57 T 28-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM348_RS06850 2ba27d74bba6a15c69a1c31db9a0c2eb 231 Gene3D G3DSA:2.60.120.10 11 131 1.0E-48 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS06850 2ba27d74bba6a15c69a1c31db9a0c2eb 231 Gene3D G3DSA:2.60.120.10 132 231 3.7E-25 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS06850 2ba27d74bba6a15c69a1c31db9a0c2eb 231 Pfam PF02678 Pirin 9 119 9.8E-38 T 28-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 40.094 T 28-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 PIRSF PIRSF000857 4 244 4.0E-55 T 28-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 Gene3D G3DSA:3.40.50.620 2 216 2.1E-40 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 219 3.7E-51 T 28-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 SUPERFAMILY SSF52402 20 208 6.09E-54 T 28-03-2018 AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 1.0E-94 T 28-03-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 AM348_RS10080 0f89697e70ff78d10980769fd9e22036 244 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 21 242 2.7E-101 T 28-03-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 Pfam PF00563 EAL domain 494 723 2.0E-59 T 28-03-2018 IPR001633 EAL domain AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 Gene3D G3DSA:3.30.70.270 321 460 1.0E-4 T 28-03-2018 AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 Gene3D G3DSA:3.20.20.450 480 735 1.9E-69 T 28-03-2018 IPR001633 EAL domain AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 SUPERFAMILY SSF141868 495 730 4.05E-67 T 28-03-2018 IPR001633 EAL domain AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 Pfam PF05231 MASE1 38 316 1.8E-10 T 28-03-2018 IPR007895 MASE1 AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 SMART SM00052 488 728 2.2E-77 T 28-03-2018 IPR001633 EAL domain AM348_RS10240 7e23f80b07996d703e37a3f82b106b03 736 SMART SM00267 317 476 3.7E-4 T 28-03-2018 IPR000160 GGDEF domain AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 SMART SM00382 281 476 9.8E-4 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 SMART SM00382 32 220 5.2E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 Pfam PF00005 ABC transporter 275 427 1.2E-17 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 Pfam PF00005 ABC transporter 23 172 3.4E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 SUPERFAMILY SSF52540 6 229 1.41E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 SUPERFAMILY SSF52540 274 484 4.19E-42 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 Gene3D G3DSA:3.40.50.300 1 246 6.5E-51 T 28-03-2018 AM348_RS14955 cf84c70faedead807f39088fb7a9e180 504 Gene3D G3DSA:3.40.50.300 265 497 5.4E-34 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Gene3D G3DSA:3.30.70.20 186 208 2.0E-5 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Gene3D G3DSA:3.30.70.20 40 72 0.044 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Gene3D G3DSA:3.30.70.20 161 185 2.3E-11 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Pfam PF13247 4Fe-4S dicluster domain 116 196 7.2E-13 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 SUPERFAMILY SSF54862 61 205 7.67E-38 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 156 167 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 183 194 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Gene3D G3DSA:3.30.70.20 131 160 2.2E-9 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Gene3D G3DSA:3.30.70.20 73 130 1.6E-10 T 28-03-2018 AM348_RS18575 390528c513288b70ca3e01a11cb6897e 208 Pfam PF12800 4Fe-4S binding domain 67 78 0.084 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 Pfam PF00924 Mechanosensitive ion channel 871 1070 7.6E-54 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 SUPERFAMILY SSF82689 981 1079 3.53E-16 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 Gene3D G3DSA:1.20.5.110 207 797 6.6E-4 T 28-03-2018 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 943 977 - T 28-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 Gene3D G3DSA:3.30.70.100 981 1075 3.0E-12 T 28-03-2018 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 SUPERFAMILY SSF82861 830 912 1.15E-8 T 28-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 Pfam PF12795 Mechanosensitive ion channel porin domain 31 249 1.2E-53 T 28-03-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 Gene3D G3DSA:2.30.30.60 929 978 2.0E-12 T 28-03-2018 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 474 810 6.2E-114 T 28-03-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 AM348_RS02950 b7cb9a1fcb34e95742bcedcdf6fd48d6 1104 SUPERFAMILY SSF50182 914 979 7.52E-17 T 28-03-2018 IPR010920 LSM domain AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 284 375 4.4E-20 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 SMART SM00936 284 375 1.5E-28 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 123 140 3.5E-17 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 150 163 3.5E-17 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 64 75 3.5E-17 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 SUPERFAMILY SSF69189 284 377 4.51E-23 T 28-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 Gene3D G3DSA:2.60.410.10 286 375 9.0E-18 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 Gene3D G3DSA:3.40.710.10 20 285 4.9E-48 T 28-03-2018 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 264 6.1E-96 T 28-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM348_RS13945 34ae737def98bf88f3bebdfc0e34a8f5 390 SUPERFAMILY SSF56601 1 284 6.06E-76 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 275 3.3E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 275 291 3.3E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 Gene3D G3DSA:2.60.120.10 24 244 2.9E-16 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 SUPERFAMILY SSF46689 191 242 1.16E-9 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 Pfam PF12833 Helix-turn-helix domain 215 293 1.9E-20 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 Gene3D G3DSA:1.10.10.60 245 299 2.2E-14 T 28-03-2018 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 Pfam PF10114 Sensory domain found in PocR 7 164 2.3E-43 T 28-03-2018 IPR018771 PocR domain AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 SMART SM00342 208 291 2.7E-35 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 SUPERFAMILY SSF46689 245 294 4.93E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS14075 5740e6603ab90c3b8587f5b053b5315a 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 245 287 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 SUPERFAMILY SSF46785 1 69 2.72E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 Gene3D G3DSA:3.90.1150.10 355 444 4.6E-17 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 Gene3D G3DSA:3.40.640.10 111 354 8.3E-38 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 SMART SM00345 7 66 1.4E-18 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 Gene3D G3DSA:1.10.10.10 1 68 4.8E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 Pfam PF00155 Aminotransferase class I and II 126 410 2.7E-25 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 2.2E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 2.2E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.1E-18 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS10640 7a0c4467c1eab955f04f4f592041e354 444 SUPERFAMILY SSF53383 62 433 1.14E-80 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS08800 cf266471975779c45b589dd428bb9869 492 Gene3D G3DSA:1.20.1600.10 14 436 1.5E-75 T 28-03-2018 AM348_RS08800 cf266471975779c45b589dd428bb9869 492 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 23 440 2.2E-140 T 28-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 AM348_RS08800 cf266471975779c45b589dd428bb9869 492 Pfam PF02321 Outer membrane efflux protein 234 426 2.6E-32 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS08800 cf266471975779c45b589dd428bb9869 492 Pfam PF02321 Outer membrane efflux protein 29 211 2.2E-26 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS08800 cf266471975779c45b589dd428bb9869 492 SUPERFAMILY SSF56954 27 445 4.32E-97 T 28-03-2018 AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 Pfam PF02421 Ferrous iron transport protein B 5 162 2.0E-64 T 28-03-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 Pfam PF07664 Ferrous iron transport protein B C terminus 455 507 1.7E-21 T 28-03-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 687 6.4E-249 T 28-03-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 Gene3D G3DSA:3.40.50.300 2 283 7.8E-35 T 28-03-2018 AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 SUPERFAMILY SSF52540 4 170 1.48E-39 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 Pfam PF07670 Nucleoside recognition 512 689 1.7E-36 T 28-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM348_RS06985 93a324177b970cc8a60c683ebbaa247e 772 Pfam PF07670 Nucleoside recognition 353 443 6.2E-13 T 28-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM348_RS21380 73145e9c8850b06c95873d21a23ef0d2 158 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 18 157 2.4E-57 T 28-03-2018 IPR005247 YbhB/YbcL AM348_RS21380 73145e9c8850b06c95873d21a23ef0d2 158 SUPERFAMILY SSF49777 1 157 8.11E-53 T 28-03-2018 IPR008914 Phosphatidylethanolamine-binding protein AM348_RS21380 73145e9c8850b06c95873d21a23ef0d2 158 Gene3D G3DSA:3.90.280.10 1 158 1.8E-50 T 28-03-2018 IPR008914 Phosphatidylethanolamine-binding protein AM348_RS21380 73145e9c8850b06c95873d21a23ef0d2 158 Pfam PF01161 Phosphatidylethanolamine-binding protein 25 157 1.7E-38 T 28-03-2018 IPR008914 Phosphatidylethanolamine-binding protein AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Gene3D G3DSA:3.30.1360.40 235 328 2.1E-23 T 28-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 1 738 34.133 T 28-03-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Gene3D G3DSA:2.120.10.90 492 737 1.2E-44 T 28-03-2018 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 593 633 2.3E-4 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 641 675 2.1E-8 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 SMART SM00434 8 458 4.3E-238 T 28-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 29 465 2.2E-134 T 28-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Gene3D G3DSA:1.10.268.10 341 480 3.1E-46 T 28-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 SUPERFAMILY SSF56719 28 479 1.01E-153 T 28-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 5 737 0.0 T 28-03-2018 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 Gene3D G3DSA:3.90.199.10 31 212 1.8E-73 T 28-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08870 b2205c4b865d882eefb0642f550903f2 752 SUPERFAMILY SSF101904 494 733 3.14E-51 T 28-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AM348_RS04930 8966342b9b46190d4064f13e95e90501 848 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 28-03-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 AM348_RS04930 8966342b9b46190d4064f13e95e90501 848 Pfam PF01295 Adenylate cyclase, class-I 228 825 1.0E-258 T 28-03-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 AM348_RS04930 8966342b9b46190d4064f13e95e90501 848 PIRSF PIRSF001444 1 847 0.0 T 28-03-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 AM348_RS04930 8966342b9b46190d4064f13e95e90501 848 Pfam PF12633 Adenylate cyclase NT domain 5 200 6.4E-81 T 28-03-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 AM348_RS04930 8966342b9b46190d4064f13e95e90501 848 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 28-03-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 7.0E-20 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 Gene3D G3DSA:1.10.357.10 1 204 1.8E-39 T 28-03-2018 AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 SUPERFAMILY SSF48498 84 201 2.14E-13 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 28-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 6.9E-13 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.9E-13 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 SUPERFAMILY SSF46689 1 66 1.85E-20 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS23025 4d8f9bba697149b8a00a6595cdf20efa 216 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 2.6E-49 T 28-03-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 AM348_RS04670 439a76717908801eb5de5264b5653dec 207 PIRSF PIRSF001488 1 207 1.6E-88 T 28-03-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AM348_RS04670 439a76717908801eb5de5264b5653dec 207 Gene3D G3DSA:3.40.30.10 17 207 5.4E-34 T 28-03-2018 AM348_RS04670 439a76717908801eb5de5264b5653dec 207 SUPERFAMILY SSF52833 20 204 1.8E-46 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS04670 439a76717908801eb5de5264b5653dec 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS04670 439a76717908801eb5de5264b5653dec 207 Pfam PF01323 DSBA-like thioredoxin domain 40 196 1.8E-28 T 28-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM348_RS14970 493c5fa4ddfc156b79bd9352f590fcac 473 Pfam PF00982 Glycosyltransferase family 20 17 451 1.6E-142 T 28-03-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 AM348_RS14970 493c5fa4ddfc156b79bd9352f590fcac 473 Gene3D G3DSA:3.40.50.2000 236 436 1.8E-39 T 28-03-2018 AM348_RS14970 493c5fa4ddfc156b79bd9352f590fcac 473 SUPERFAMILY SSF53756 2 453 9.42E-141 T 28-03-2018 AM348_RS14970 493c5fa4ddfc156b79bd9352f590fcac 473 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 451 1.8E-177 T 28-03-2018 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 AM348_RS14970 493c5fa4ddfc156b79bd9352f590fcac 473 Gene3D G3DSA:3.40.50.2000 1 235 4.5E-64 T 28-03-2018 AM348_RS23400 c01392347b8bcee896d0cbc60e8519c7 213 Gene3D G3DSA:3.40.50.850 2 208 4.6E-33 T 28-03-2018 AM348_RS23400 c01392347b8bcee896d0cbc60e8519c7 213 Pfam PF00857 Isochorismatase family 12 165 1.0E-22 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS23400 c01392347b8bcee896d0cbc60e8519c7 213 SUPERFAMILY SSF52499 3 204 4.84E-48 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 2.1E-95 T 28-03-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 Gene3D G3DSA:3.20.20.140 1 265 4.6E-81 T 28-03-2018 AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 PIRSF PIRSF005902 1 259 6.3E-76 T 28-03-2018 IPR001130 TatD family GO:0016788 AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 SUPERFAMILY SSF51556 1 259 2.68E-86 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS19785 39775d648e49004bdc2b6ec70dd6d91a 265 Pfam PF01026 TatD related DNase 4 255 1.8E-75 T 28-03-2018 IPR001130 TatD family GO:0016788 AM348_RS14890 3b94b0566dc71865bd0275d331a896ea 93 Gene3D G3DSA:3.30.70.100 15 93 3.0E-15 T 28-03-2018 AM348_RS14890 3b94b0566dc71865bd0275d331a896ea 93 Pfam PF00403 Heavy-metal-associated domain 24 83 1.8E-7 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS14890 3b94b0566dc71865bd0275d331a896ea 93 SUPERFAMILY SSF55008 17 88 1.96E-15 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 Pfam PF01047 MarR family 36 94 4.8E-11 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 SUPERFAMILY SSF46785 10 147 1.03E-28 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 SMART SM00347 29 130 2.3E-17 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 Gene3D G3DSA:1.10.10.10 8 154 3.8E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 9.4E-8 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 9.4E-8 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS01990 dcceed83323ddbd7683947e18f2115a3 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 9.4E-8 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 PIRSF PIRSF000535 2 311 7.9E-118 T 28-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 Pfam PF00294 pfkB family carbohydrate kinase 14 293 4.8E-68 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 Gene3D G3DSA:3.40.1190.20 47 312 5.3E-54 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 6.3E-101 T 28-03-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 Gene3D G3DSA:2.20.150.10 12 46 8.7E-11 T 28-03-2018 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 1.8E-98 T 28-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AM348_RS13120 07a7aa3181058b7cf02f6eb2dd680bb1 312 SUPERFAMILY SSF53613 7 290 2.34E-69 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS11530 545068628db2043c132959e8044fde7b 616 Pfam PF00012 Hsp70 protein 21 600 2.0E-203 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 SUPERFAMILY SSF53067 19 196 1.62E-50 T 28-03-2018 AM348_RS11530 545068628db2043c132959e8044fde7b 616 Gene3D G3DSA:1.20.1270.10 529 615 3.4E-13 T 28-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM348_RS11530 545068628db2043c132959e8044fde7b 616 SUPERFAMILY SSF100934 504 615 7.85E-37 T 28-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM348_RS11530 545068628db2043c132959e8044fde7b 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 8.2E-271 T 28-03-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AM348_RS11530 545068628db2043c132959e8044fde7b 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.554 T 28-03-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 AM348_RS11530 545068628db2043c132959e8044fde7b 616 SUPERFAMILY SSF53067 200 377 2.98E-52 T 28-03-2018 AM348_RS11530 545068628db2043c132959e8044fde7b 616 Gene3D G3DSA:2.60.34.10 387 528 7.2E-49 T 28-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 Gene3D G3DSA:3.30.420.40 209 358 8.0E-40 T 28-03-2018 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 329 345 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 385 404 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 360 380 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 466 482 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 48 60 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 5.4E-55 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 Gene3D G3DSA:3.30.420.40 20 208 2.2E-56 T 28-03-2018 AM348_RS11530 545068628db2043c132959e8044fde7b 616 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS11530 545068628db2043c132959e8044fde7b 616 SUPERFAMILY SSF100920 384 535 9.16E-50 T 28-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM348_RS13890 f602fc650f5475e91de678f956933424 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 7 427 41.391 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 36 60 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 109 136 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 168 194 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 361 379 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 198 223 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PRINTS PR00083 Histidinol dehydrogenase signature 320 345 8.7E-103 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 28-03-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 PIRSF PIRSF000099 1 430 1.5E-170 T 28-03-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 36 426 6.0E-162 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 SUPERFAMILY SSF53720 7 429 1.29E-89 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS13890 f602fc650f5475e91de678f956933424 434 Pfam PF00815 Histidinol dehydrogenase 28 427 2.6E-166 T 28-03-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 AM348_RS13890 f602fc650f5475e91de678f956933424 434 Gene3D G3DSA:3.40.50.1980 226 371 9.6E-71 T 28-03-2018 AM348_RS13890 f602fc650f5475e91de678f956933424 434 Gene3D G3DSA:3.40.50.1980 29 225 6.3E-87 T 28-03-2018 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 PIRSF PIRSF001365 1 292 5.9E-97 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 65.908 T 28-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 1.6E-123 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 5.0E-35 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 5.0E-35 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 5.0E-35 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 5.0E-35 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 28-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 28-03-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 SUPERFAMILY SSF51569 1 292 1.88E-99 T 28-03-2018 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 SMART SM01130 1 290 2.1E-142 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 Gene3D G3DSA:3.20.20.70 1 292 8.4E-92 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11740 8ecc612f61032fe26f876d8e4ded06e2 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 288 6.8E-126 T 28-03-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 2.3E-7 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 2.3E-7 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 2.3E-7 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Gene3D G3DSA:3.30.450.20 28 177 1.2E-26 T 28-03-2018 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 SUPERFAMILY SSF55874 311 469 8.25E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 SMART SM00388 255 320 7.1E-14 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Gene3D G3DSA:3.30.565.10 315 472 5.5E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 470 2.6E-20 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 SMART SM00304 204 255 3.9E-5 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 319 7.4E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 SUPERFAMILY SSF103190 52 177 6.67E-13 T 28-03-2018 IPR029151 Periplasmic sensor domain-like AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Pfam PF00672 HAMP domain 204 251 3.7E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Pfam PF17203 Single cache domain 3 35 168 1.4E-8 T 28-03-2018 IPR033463 Single cache domain 3 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 SMART SM00387 363 473 4.7E-31 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 Gene3D G3DSA:1.10.287.130 236 314 9.3E-10 T 28-03-2018 AM348_RS01705 770a449d1a93776e91ad2a5dd685405f 474 SUPERFAMILY SSF47384 241 320 3.53E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 SUPERFAMILY SSF53738 305 446 3.06E-32 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Gene3D G3DSA:3.40.120.10 214 331 1.9E-21 T 28-03-2018 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 SUPERFAMILY SSF53738 209 317 9.53E-9 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Gene3D G3DSA:3.30.310.50 443 546 1.2E-20 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 5.8E-21 T 28-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Gene3D G3DSA:3.40.120.10 12 213 1.1E-46 T 28-03-2018 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 482 538 3.9E-8 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 0.0 T 28-03-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 179 2.9E-36 T 28-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 SUPERFAMILY SSF53738 26 235 8.71E-50 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 1.2E-30 T 28-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 28-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 SUPERFAMILY SSF55957 433 544 8.2E-20 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS21870 e3b20ffc3f7d6af65f0a1dba48378c2e 546 Gene3D G3DSA:3.40.120.10 332 442 2.1E-27 T 28-03-2018 AM348_RS19145 16823c2ff4a1e75ee222e9a745501a69 417 SUPERFAMILY SSF51445 372 404 8.05E-73 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS19145 16823c2ff4a1e75ee222e9a745501a69 417 SUPERFAMILY SSF51445 18 276 8.05E-73 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS19145 16823c2ff4a1e75ee222e9a745501a69 417 ProSitePatterns PS01095 Chitinases family 18 active site. 145 153 - T 28-03-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM348_RS19145 16823c2ff4a1e75ee222e9a745501a69 417 Pfam PF00704 Glycosyl hydrolases family 18 26 400 2.3E-66 T 28-03-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 AM348_RS19145 16823c2ff4a1e75ee222e9a745501a69 417 Gene3D G3DSA:3.20.20.80 14 417 5.1E-80 T 28-03-2018 AM348_RS19145 16823c2ff4a1e75ee222e9a745501a69 417 SMART SM00636 23 400 1.1E-71 T 28-03-2018 IPR011583 Chitinase II GO:0008061 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 SMART SM00388 238 300 6.5E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 Pfam PF00672 HAMP domain 184 234 5.7E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 454 2.0E-19 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 SUPERFAMILY SSF55874 289 453 1.26E-37 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 299 1.1E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 146 1.0E-10 T 28-03-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 Gene3D G3DSA:3.30.565.10 303 457 2.2E-38 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 Gene3D G3DSA:1.10.287.130 228 296 2.3E-15 T 28-03-2018 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 SMART SM00304 184 237 1.1E-9 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 SMART SM00387 345 455 6.9E-33 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 2.4E-15 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 2.4E-15 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 2.4E-15 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 2.4E-15 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS04385 62fff5d66135b6106e94f95565ca03ba 457 SUPERFAMILY SSF47384 224 299 6.08E-16 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 Gene3D G3DSA:1.10.599.10 467 688 2.4E-41 T 28-03-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 SMART SM00790 5 206 6.0E-90 T 28-03-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 Gene3D G3DSA:1.10.569.10 270 466 1.3E-25 T 28-03-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 7 205 6.0E-69 T 28-03-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 Gene3D G3DSA:3.60.9.10 2 210 2.3E-73 T 28-03-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 228 685 6.2E-67 T 28-03-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 SUPERFAMILY SSF56228 3 210 7.98E-62 T 28-03-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 AM348_RS18570 e4eabc6d8646a08d1cb15dc5711ef2bf 700 SUPERFAMILY SSF48310 212 698 3.79E-73 T 28-03-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 1.7E-24 T 28-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Gene3D G3DSA:2.30.30.100 272 318 2.7E-14 T 28-03-2018 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Gene3D G3DSA:1.10.10.10 1 64 2.0E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Gene3D G3DSA:3.30.930.10 65 270 1.4E-60 T 28-03-2018 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 SUPERFAMILY SSF46785 4 60 4.57E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 SUPERFAMILY SSF50037 271 317 6.41E-11 T 28-03-2018 IPR008988 Transcriptional repressor, C-terminal AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 SUPERFAMILY SSF55681 70 268 2.73E-58 T 28-03-2018 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 4.7E-12 T 28-03-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 76 3.6E-28 T 28-03-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 317 8.9E-84 T 28-03-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Pfam PF08279 HTH domain 10 58 4.2E-12 T 28-03-2018 IPR013196 Helix-turn-helix, type 11 AM348_RS04045 0d2cdd5e2527ae07fe4c915b39fb79fc 320 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.778 T 28-03-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 8.9E-25 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 6.2E-293 T 28-03-2018 IPR006298 GTP-binding protein TypA GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 SUPERFAMILY SSF54980 302 387 2.77E-15 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 SUPERFAMILY SSF52540 3 219 1.62E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Gene3D G3DSA:2.40.50.250 483 573 4.3E-38 T 28-03-2018 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Gene3D G3DSA:2.40.30.10 189 300 3.3E-22 T 28-03-2018 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 4.7E-11 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Gene3D G3DSA:3.40.50.300 68 188 1.4E-29 T 28-03-2018 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 SUPERFAMILY SSF50447 151 299 2.21E-33 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Gene3D G3DSA:3.40.50.300 2 67 1.0E-10 T 28-03-2018 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 2.7E-57 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Pfam PF00679 Elongation factor G C-terminus 397 476 1.4E-21 T 28-03-2018 IPR000640 Elongation factor EFG, domain V-like AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Gene3D G3DSA:3.30.70.240 401 481 8.0E-19 T 28-03-2018 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 Gene3D G3DSA:3.30.70.870 302 400 1.3E-31 T 28-03-2018 AM348_RS04615 0d5e3548cb6fe4c75cdfbf0620db80ae 607 SUPERFAMILY SSF54980 398 512 4.12E-26 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 5.5E-25 T 28-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 627 690 6.5E-6 T 28-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 4.7E-61 T 28-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 28-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Gene3D G3DSA:3.90.226.10 6 205 1.1E-52 T 28-03-2018 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 28-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Gene3D G3DSA:3.40.50.720 255 495 5.4E-61 T 28-03-2018 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Gene3D G3DSA:1.10.1040.10 622 713 8.0E-16 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 SUPERFAMILY SSF52096 3 303 2.96E-67 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 53.48 T 28-03-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 SUPERFAMILY SSF51735 314 495 2.06E-57 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 SUPERFAMILY SSF48179 495 638 5.02E-30 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 28-03-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 SUPERFAMILY SSF48179 622 714 3.83E-23 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Gene3D G3DSA:1.10.1040.10 503 592 1.1E-21 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS04745 0b82187e73a5aa6d58b6530665b55b9c 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 205 5.1E-39 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS11195 f54c7398b922dc909e283a2fb727d22e 232 SMART SM01144 27 218 3.1E-70 T 28-03-2018 IPR005636 DTW AM348_RS11195 f54c7398b922dc909e283a2fb727d22e 232 Pfam PF03942 DTW domain 30 211 1.2E-41 T 28-03-2018 IPR005636 DTW AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 803 33.34 T 28-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 Pfam PF01553 Acyltransferase 282 424 5.5E-26 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 PIRSF PIRSF000437 19 806 0.0 T 28-03-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 SUPERFAMILY SSF69593 246 485 3.79E-23 T 28-03-2018 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 Gene3D G3DSA:3.40.1130.10 236 494 9.0E-35 T 28-03-2018 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 799 0.0 T 28-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 PIRSF PIRSF500064 2 806 0.0 T 28-03-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 AM348_RS03590 db4578a6ad0864c94e267a6bbd675a98 806 SMART SM00563 300 427 1.3E-27 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 45 64 1.8E-68 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 172 192 1.8E-68 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 64 84 1.8E-68 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 217 242 1.8E-68 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 193 214 1.8E-68 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 84 103 1.8E-68 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 172 187 - T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 47 243 3.6E-95 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 103 115 6.6E-34 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 143 155 6.6E-34 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 165 177 6.6E-34 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 43 52 6.6E-34 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 233 243 6.6E-34 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 115 129 6.6E-34 T 28-03-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 220 232 - T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS14390 31114f2b6bd96d8a78f65a0e763fef36 245 Pfam PF00813 FliP family 48 239 8.7E-80 T 28-03-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 394 1.5E-83 T 28-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 394 1.3E-178 T 28-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 PIRSF PIRSF000484 1 397 9.7E-62 T 28-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 SUPERFAMILY SSF51690 120 392 4.71E-87 T 28-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 SUPERFAMILY SSF54675 2 138 1.91E-43 T 28-03-2018 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 Gene3D G3DSA:3.20.140.10 1 400 3.2E-104 T 28-03-2018 AM348_RS20640 fe8d89117c3ef94f86caa5b085b728b2 400 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 395 50.42 T 28-03-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 227 287 2.2E-19 T 28-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 Gene3D G3DSA:1.10.3090.10 198 441 5.4E-43 T 28-03-2018 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 Pfam PF01743 Poly A polymerase head domain 69 200 4.7E-39 T 28-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 31 467 38.836 T 28-03-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 SUPERFAMILY SSF81891 198 436 9.55E-50 T 28-03-2018 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 SUPERFAMILY SSF81301 40 196 1.88E-40 T 28-03-2018 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 Pfam PF12626 Polymerase A arginine-rich C-terminus 345 464 1.4E-40 T 28-03-2018 IPR025866 Polymerase A arginine-rich C-terminal domain AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 38 465 1.5E-157 T 28-03-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 AM348_RS00920 55e352ea853fa63b5936334e5809bb0e 472 Gene3D G3DSA:3.30.460.10 35 197 6.2E-53 T 28-03-2018 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 SUPERFAMILY SSF56672 1 234 1.16E-94 T 28-03-2018 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Gene3D G3DSA:1.10.150.20 171 242 5.0E-23 T 28-03-2018 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Gene3D G3DSA:3.30.70.270 41 115 2.4E-25 T 28-03-2018 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Gene3D G3DSA:3.30.70.270 116 170 9.6E-23 T 28-03-2018 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Pfam PF11799 impB/mucB/samB family C-terminal domain 237 341 6.2E-10 T 28-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Gene3D G3DSA:3.30.1490.100 243 351 3.1E-29 T 28-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 SUPERFAMILY SSF100879 241 349 1.31E-27 T 28-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Pfam PF11798 IMS family HHH motif 166 197 4.6E-9 T 28-03-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Hamap MF_01113 DNA polymerase IV [dinB]. 1 349 37.308 T 28-03-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AM348_RS00435 d99aa5091a1e6e7b09f9e3201c7b6d6e 351 Pfam PF00817 impB/mucB/samB family 7 154 3.5E-50 T 28-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 SMART SM00052 406 644 4.7E-13 T 28-03-2018 IPR001633 EAL domain AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 Gene3D G3DSA:3.20.20.450 404 644 8.6E-44 T 28-03-2018 IPR001633 EAL domain AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 SUPERFAMILY SSF141868 413 643 1.83E-43 T 28-03-2018 IPR001633 EAL domain AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 Pfam PF00563 EAL domain 413 641 1.0E-45 T 28-03-2018 IPR001633 EAL domain AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 SUPERFAMILY SSF55073 242 395 6.36E-17 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 Gene3D G3DSA:3.30.70.270 230 403 1.9E-24 T 28-03-2018 AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 Pfam PF16448 LapD/MoxY periplasmic domain 23 145 1.5E-38 T 28-03-2018 IPR032244 LapD/MoxY, periplasmic domain AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 390 1.7E-18 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10215 5b0d7c4a246ed64b3765fe369574a58c 644 SMART SM00267 225 397 1.1E-10 T 28-03-2018 IPR000160 GGDEF domain AM348_RS22645 15aafa97d03830208fa11763f547f4ca 142 SUPERFAMILY SSF52402 2 142 2.43E-30 T 28-03-2018 AM348_RS22645 15aafa97d03830208fa11763f547f4ca 142 Gene3D G3DSA:3.40.50.620 2 142 1.6E-29 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22645 15aafa97d03830208fa11763f547f4ca 142 PRINTS PR01438 Universal stress protein signature 120 142 1.1E-14 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS22645 15aafa97d03830208fa11763f547f4ca 142 PRINTS PR01438 Universal stress protein signature 103 115 1.1E-14 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS22645 15aafa97d03830208fa11763f547f4ca 142 PRINTS PR01438 Universal stress protein signature 2 20 1.1E-14 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS22645 15aafa97d03830208fa11763f547f4ca 142 Pfam PF00582 Universal stress protein family 1 142 1.1E-26 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Gene3D G3DSA:3.30.70.260 701 784 7.4E-9 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 890 346.763 T 28-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Gene3D G3DSA:1.10.3090.10 369 658 2.9E-36 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 SMART SM00471 464 611 1.5E-11 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Gene3D G3DSA:3.30.460.10 52 186 4.6E-23 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Gene3D G3DSA:1.20.120.330 190 334 3.2E-23 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 SUPERFAMILY SSF55021 705 763 6.25E-9 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Pfam PF01966 HD domain 468 601 4.8E-15 T 28-03-2018 IPR006674 HD domain AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Pfam PF01842 ACT domain 709 759 4.4E-7 T 28-03-2018 IPR002912 ACT domain AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Pfam PF01842 ACT domain 817 874 5.6E-9 T 28-03-2018 IPR002912 ACT domain AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 SUPERFAMILY SSF109604 457 600 4.4E-13 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 SUPERFAMILY SSF81593 213 326 5.65E-9 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 SUPERFAMILY SSF55021 815 874 1.41E-9 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Pfam PF08335 GlnD PII-uridylyltransferase 193 331 1.8E-35 T 28-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 SUPERFAMILY SSF81301 10 189 1.72E-22 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 49 884 5.0E-300 T 28-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Pfam PF01909 Nucleotidyltransferase domain 86 148 1.4E-6 T 28-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 Gene3D G3DSA:3.30.70.260 809 886 8.5E-11 T 28-03-2018 AM348_RS00785 60c86c333add3cb2179338321b3f3a47 890 PIRSF PIRSF006288 23 889 0.0 T 28-03-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 AM348_RS04685 15728190cc2b8a6b880d9f59a7445525 194 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 7 188 2.1E-69 T 28-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AM348_RS04685 15728190cc2b8a6b880d9f59a7445525 194 Gene3D G3DSA:3.90.550.10 4 193 1.2E-34 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS04685 15728190cc2b8a6b880d9f59a7445525 194 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 190 30.52 T 28-03-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 AM348_RS04685 15728190cc2b8a6b880d9f59a7445525 194 Pfam PF12804 MobA-like NTP transferase domain 9 159 3.7E-35 T 28-03-2018 IPR025877 MobA-like NTP transferase AM348_RS04685 15728190cc2b8a6b880d9f59a7445525 194 SUPERFAMILY SSF53448 7 187 9.46E-37 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Pfam PF05524 PEP-utilising enzyme, N-terminal 124 237 8.1E-11 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Gene3D G3DSA:3.20.20.60 425 655 8.7E-66 T 28-03-2018 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 SUPERFAMILY SSF47831 145 254 3.27E-18 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Gene3D G3DSA:3.30.1340.10 4 90 6.0E-14 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 296 307 - T 28-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Gene3D G3DSA:1.10.274.10 144 255 1.6E-18 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Pfam PF00391 PEP-utilising enzyme, mobile domain 264 337 6.8E-14 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 28-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 SUPERFAMILY SSF55594 5 89 4.06E-16 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 559 577 - T 28-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 363 653 4.1E-111 T 28-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 689 829 4.8E-31 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Gene3D G3DSA:3.50.30.10 256 389 3.3E-20 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 SUPERFAMILY SSF52009 236 355 9.55E-24 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Gene3D G3DSA:3.40.930.10 684 831 3.0E-32 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Gene3D G3DSA:3.20.20.60 390 424 7.7E-8 T 28-03-2018 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 181 677 6.5E-142 T 28-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 SUPERFAMILY SSF55804 688 828 2.49E-30 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 Pfam PF00381 PTS HPr component phosphorylation site 6 84 1.5E-11 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 SUPERFAMILY SSF51621 368 661 7.07E-96 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 559 574 4.2E-20 T 28-03-2018 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 612 624 4.2E-20 T 28-03-2018 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 576 591 4.2E-20 T 28-03-2018 AM348_RS04180 a13dff67f69ab97f639c8d2c5aad5154 833 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 405 424 4.2E-20 T 28-03-2018 AM348_RS01240 7d729fd7453ed648cf827e2d7297b5ad 588 Pfam PF00905 Penicillin binding protein transpeptidase domain 260 554 6.0E-84 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS01240 7d729fd7453ed648cf827e2d7297b5ad 588 SUPERFAMILY SSF56519 63 233 2.49E-46 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS01240 7d729fd7453ed648cf827e2d7297b5ad 588 Gene3D G3DSA:3.40.710.10 236 587 4.1E-79 T 28-03-2018 AM348_RS01240 7d729fd7453ed648cf827e2d7297b5ad 588 Gene3D G3DSA:3.90.1310.10 36 235 7.1E-44 T 28-03-2018 AM348_RS01240 7d729fd7453ed648cf827e2d7297b5ad 588 SUPERFAMILY SSF56601 235 563 8.05E-87 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS01240 7d729fd7453ed648cf827e2d7297b5ad 588 Pfam PF03717 Penicillin-binding Protein dimerisation domain 70 220 1.1E-20 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 SUPERFAMILY SSF52540 159 545 1.76E-99 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 3.7E-28 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 SUPERFAMILY SSF81923 4 156 6.28E-43 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 SUPERFAMILY SSF52540 546 853 3.2E-87 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Gene3D G3DSA:1.10.8.60 766 857 2.7E-24 T 28-03-2018 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 28-03-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.3E-13 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.2E-11 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Gene3D G3DSA:1.10.1780.10 1 151 5.5E-33 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 SMART SM01086 766 855 1.1E-37 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 28-03-2018 IPR028299 ClpA/B, conserved site 2 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 28-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 3.3E-55 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Gene3D G3DSA:3.40.50.300 552 765 7.7E-55 T 28-03-2018 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Gene3D G3DSA:1.10.8.60 343 547 1.4E-44 T 28-03-2018 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 SMART SM00382 198 343 5.0E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 SMART SM00382 597 735 2.0E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Gene3D G3DSA:3.40.50.300 157 342 2.9E-25 T 28-03-2018 AM348_RS11150 e8a41c7309142556717aeb9fd0427454 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 337 1.3E-13 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 46 352 5.7E-99 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 SUPERFAMILY SSF52279 395 464 4.05E-59 T 28-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 SUPERFAMILY SSF52279 495 651 4.05E-59 T 28-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 SUPERFAMILY SSF51445 34 394 1.68E-97 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 395 648 4.3E-62 T 28-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 Gene3D G3DSA:3.40.50.1700 380 648 2.9E-86 T 28-03-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 120 139 3.4E-22 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 166 182 3.4E-22 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 273 291 3.4E-22 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 203 219 3.4E-22 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 101 117 3.4E-22 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 Gene3D G3DSA:3.20.20.300 32 376 5.4E-103 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 Pfam PF14310 Fibronectin type III-like domain 686 753 4.5E-22 T 28-03-2018 IPR026891 Fibronectin type III-like domain AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 SMART SM01217 685 754 4.1E-30 T 28-03-2018 IPR026891 Fibronectin type III-like domain AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 Gene3D G3DSA:2.60.40.10 649 764 2.7E-34 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS13320 dbbe8732d9c8fc0977441b5751803261 765 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 273 290 - T 28-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AM348_RS21315 b13f129d177cebe757d4bb98daf14751 161 Gene3D G3DSA:3.30.70.640 2 158 7.5E-69 T 28-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 AM348_RS21315 b13f129d177cebe757d4bb98daf14751 161 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 7.8E-74 T 28-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 AM348_RS21315 b13f129d177cebe757d4bb98daf14751 161 Pfam PF01967 MoaC family 15 150 5.8E-55 T 28-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 AM348_RS21315 b13f129d177cebe757d4bb98daf14751 161 SUPERFAMILY SSF55040 11 155 6.54E-62 T 28-03-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 AM348_RS21315 b13f129d177cebe757d4bb98daf14751 161 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 36.928 T 28-03-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 SMART SM00411 1 90 2.6E-42 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 SUPERFAMILY SSF47729 1 90 7.95E-32 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 Gene3D G3DSA:4.10.520.10 1 90 2.3E-33 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.4E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.4E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.4E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.3E-32 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS23190 f6907bf50d9300119c6d49c17593f9b7 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 28-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM348_RS02190 5002babd1a7e6f6016e5cc93bcbaf24a 290 PIRSF PIRSF030850 1 290 1.4E-134 T 28-03-2018 IPR011396 Uncharacterised conserved protein UCP030850 AM348_RS02190 5002babd1a7e6f6016e5cc93bcbaf24a 290 Gene3D G3DSA:3.40.1800.10 160 240 1.1E-10 T 28-03-2018 AM348_RS02190 5002babd1a7e6f6016e5cc93bcbaf24a 290 Pfam PF13391 HNH endonuclease 182 235 6.7E-8 T 28-03-2018 IPR003615 HNH nuclease AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 544 9.7E-194 T 28-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 698 7.1E-47 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 SUPERFAMILY SSF55904 567 706 1.57E-42 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 Gene3D G3DSA:3.40.640.10 130 424 2.2E-32 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 28-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 SUPERFAMILY SSF53383 130 562 6.93E-100 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 1.0E-28 T 28-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 PIRSF PIRSF009393 1 712 1.6E-278 T 28-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 Gene3D G3DSA:3.90.1150.10 425 594 2.1E-53 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS00685 f9cec62a4cb2cc9908900f53e36fcb39 712 Gene3D G3DSA:3.90.100.10 595 712 1.6E-36 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 Gene3D G3DSA:3.20.20.10 115 369 3.0E-33 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 SUPERFAMILY SSF51419 92 369 1.87E-67 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 TIGRFAM TIGR01273 speA: arginine decarboxylase 31 656 2.7E-278 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PIRSF PIRSF001336 17 658 2.3E-256 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 657 43.391 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 100 367 9.2E-72 T 28-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 301 314 - T 28-03-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 566 579 6.2E-19 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 263 276 6.2E-19 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 124 142 6.2E-19 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 146 158 6.2E-19 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 357 376 6.2E-19 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 Gene3D G3DSA:2.40.37.10 22 114 1.2E-13 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 Gene3D G3DSA:2.40.37.10 423 604 1.4E-62 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 196 217 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 170 185 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 220 242 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 347 364 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 513 538 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 116 130 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 566 587 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 488 509 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 PRINTS PR01180 Arginine decarboxylase signature 92 107 1.4E-73 T 28-03-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 SUPERFAMILY SSF50621 481 584 2.76E-7 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS09300 d32da9a524184775cd2a3152a81fca28 658 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 124 142 - T 28-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 SUPERFAMILY SSF55031 211 321 1.57E-29 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 Gene3D G3DSA:3.40.630.10 1 418 9.7E-43 T 28-03-2018 AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 139 178 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 406 4.5E-107 T 28-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 Pfam PF01546 Peptidase family M20/M25/M40 140 405 2.1E-10 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 SUPERFAMILY SSF53187 2 212 7.07E-68 T 28-03-2018 AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 SUPERFAMILY SSF53187 325 406 7.07E-68 T 28-03-2018 AM348_RS00185 d0e38e6131a23180d6e3b2779c19bf10 418 PIRSF PIRSF037215 1 410 7.7E-150 T 28-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 SUPERFAMILY SSF51735 1 234 1.18E-64 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 1.5E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 1.5E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.5E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.6E-35 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.6E-35 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-35 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.6E-35 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 1.6E-35 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 1.6E-35 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 Gene3D G3DSA:3.40.50.720 1 47 1.7E-8 T 28-03-2018 AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 Gene3D G3DSA:3.40.50.720 48 237 6.2E-49 T 28-03-2018 AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 182 6.3E-4 T 28-03-2018 AM348_RS15780 63e80195b5a932942062e125d50bc1cc 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 233 8.5E-51 T 28-03-2018 AM348_RS14030 24fef8ff051aa7c6a1b33a824f9956f6 91 SMART SM00877 3 79 2.0E-37 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14030 24fef8ff051aa7c6a1b33a824f9956f6 91 SUPERFAMILY SSF143414 3 89 3.27E-32 T 28-03-2018 AM348_RS14030 24fef8ff051aa7c6a1b33a824f9956f6 91 Pfam PF00936 BMC domain 4 79 9.2E-29 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14030 24fef8ff051aa7c6a1b33a824f9956f6 91 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 47 3.0E-17 T 28-03-2018 AM348_RS14030 24fef8ff051aa7c6a1b33a824f9956f6 91 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 28-03-2018 IPR020808 Bacterial microcompartments protein, conserved site AM348_RS13535 32e188e6a0c61c20da7caf1efd96c608 537 Gene3D G3DSA:3.50.50.60 174 440 0.038 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13535 32e188e6a0c61c20da7caf1efd96c608 537 Pfam PF13454 FAD-NAD(P)-binding 5 164 3.0E-28 T 28-03-2018 AM348_RS13535 32e188e6a0c61c20da7caf1efd96c608 537 SUPERFAMILY SSF51905 1 213 7.77E-12 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13535 32e188e6a0c61c20da7caf1efd96c608 537 Gene3D G3DSA:3.50.50.60 1 167 1.5E-10 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 SUPERFAMILY SSF53633 9 295 3.53E-71 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 Pfam PF00696 Amino acid kinase family 9 281 3.9E-45 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 ProSitePatterns PS00324 Aspartokinase signature. 10 18 - T 28-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 SUPERFAMILY SSF55021 303 362 2.75E-6 T 28-03-2018 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 Gene3D G3DSA:3.40.1160.10 7 286 6.4E-61 T 28-03-2018 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 PIRSF PIRSF000726 7 453 9.5E-126 T 28-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 Gene3D G3DSA:3.30.70.260 287 377 8.3E-11 T 28-03-2018 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 Gene3D G3DSA:3.30.70.260 378 453 3.8E-12 T 28-03-2018 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 SUPERFAMILY SSF55021 382 452 1.45E-11 T 28-03-2018 AM348_RS15715 816f13bc963755286f9b7c73fd9e4cef 453 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 9 452 1.7E-118 T 28-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS21065 232d4ce93bf12a546290374c6c00fa19 512 Gene3D G3DSA:3.10.105.10 275 486 2.3E-59 T 28-03-2018 AM348_RS21065 232d4ce93bf12a546290374c6c00fa19 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 429 1.2E-100 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS21065 232d4ce93bf12a546290374c6c00fa19 512 Gene3D G3DSA:3.40.190.10 182 274 2.7E-28 T 28-03-2018 AM348_RS21065 232d4ce93bf12a546290374c6c00fa19 512 PIRSF PIRSF002741 21 511 3.5E-109 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS21065 232d4ce93bf12a546290374c6c00fa19 512 Gene3D G3DSA:3.90.76.10 37 181 1.2E-41 T 28-03-2018 AM348_RS21065 232d4ce93bf12a546290374c6c00fa19 512 SUPERFAMILY SSF53850 30 511 1.45E-145 T 28-03-2018 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.038 T 28-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 3.1E-45 T 28-03-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 SUPERFAMILY SSF47917 383 511 9.16E-46 T 28-03-2018 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 28-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Gene3D G3DSA:1.20.150.20 384 510 3.6E-46 T 28-03-2018 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Gene3D G3DSA:3.40.50.300 83 375 3.9E-112 T 28-03-2018 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 1.1E-260 T 28-03-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 SUPERFAMILY SSF52540 96 381 2.18E-94 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 1.2E-12 T 28-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Gene3D G3DSA:2.40.30.20 3 82 2.7E-27 T 28-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 SUPERFAMILY SSF50615 10 94 3.73E-25 T 28-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05275 b97c24de42b7e5384488cc1925ddd705 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.6E-72 T 28-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS13505 9ae778a0f2e4f9437290e7a8669f989d 276 SUPERFAMILY SSF55846 24 194 1.44E-52 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS13505 9ae778a0f2e4f9437290e7a8669f989d 276 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 42 179 5.8E-26 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS13505 9ae778a0f2e4f9437290e7a8669f989d 276 SMART SM00644 32 178 1.0E-38 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS13505 9ae778a0f2e4f9437290e7a8669f989d 276 SUPERFAMILY SSF47090 198 273 2.59E-19 T 28-03-2018 IPR002477 Peptidoglycan binding-like AM348_RS13505 9ae778a0f2e4f9437290e7a8669f989d 276 Gene3D G3DSA:1.10.101.10 193 276 4.2E-7 T 28-03-2018 IPR002477 Peptidoglycan binding-like AM348_RS13505 9ae778a0f2e4f9437290e7a8669f989d 276 Gene3D G3DSA:3.40.80.10 42 192 8.1E-43 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 464 3.4E-204 T 28-03-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SUPERFAMILY SSF47819 530 605 4.58E-26 T 28-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SUPERFAMILY SSF52540 208 453 5.9E-64 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SMART SM00341 529 609 1.6E-31 T 28-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Gene3D G3DSA:1.10.150.80 524 609 2.8E-27 T 28-03-2018 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 13 601 8.2E-275 T 28-03-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Gene3D G3DSA:1.10.10.10 404 523 1.5E-32 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Gene3D G3DSA:3.40.50.300 210 403 1.6E-49 T 28-03-2018 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Pfam PF16124 RecQ zinc-binding 343 404 7.2E-15 T 28-03-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Pfam PF00270 DEAD/DEAH box helicase 28 186 4.0E-19 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SUPERFAMILY SSF52540 14 200 1.65E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Pfam PF00271 Helicase conserved C-terminal domain 222 330 2.2E-20 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Pfam PF00570 HRDC domain 533 599 5.9E-25 T 28-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SMART SM00487 22 216 6.4E-30 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Pfam PF09382 RQC domain 406 514 6.8E-35 T 28-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SMART SM00490 250 331 6.5E-29 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 SMART SM00956 411 514 9.0E-49 T 28-03-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 AM348_RS04870 008daf0350ba4dd8721f3fad3277b9d6 609 Gene3D G3DSA:3.40.50.300 1 208 3.1E-38 T 28-03-2018 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 Pfam PF02357 Transcription termination factor nusG 7 112 1.1E-27 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 28-03-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 Gene3D G3DSA:2.30.30.30 122 181 7.3E-22 T 28-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.72 T 28-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 SUPERFAMILY SSF82679 6 116 4.58E-40 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 SUPERFAMILY SSF50104 125 180 9.03E-20 T 28-03-2018 IPR008991 Translation protein SH3-like domain AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 Gene3D G3DSA:3.30.70.940 6 119 1.0E-41 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 28-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 28-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 28-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 SMART SM00738 6 115 4.5E-50 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 SMART SM00739 127 154 3.8E-6 T 28-03-2018 IPR005824 KOW AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 Pfam PF00467 KOW motif 130 162 5.4E-8 T 28-03-2018 IPR005824 KOW AM348_RS04005 3c433e2826f6b4bdc765129a0e785594 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 6.6E-71 T 28-03-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 9.5E-48 T 28-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 2.7E-124 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 4.5E-28 T 28-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 Gene3D G3DSA:3.40.50.1370 147 292 1.2E-47 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 SUPERFAMILY SSF53671 4 306 6.55E-100 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 2.4E-25 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 2.4E-25 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 2.4E-25 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 2.4E-25 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 Gene3D G3DSA:3.40.50.1370 1 146 2.6E-52 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 37.887 T 28-03-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02435 fe7254ba639d397f2922965814c91397 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS19940 ea45311d8b4731d35fcf40b101a1acd1 97 Gene3D G3DSA:1.10.287.1160 59 88 1.3E-10 T 28-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AM348_RS19940 ea45311d8b4731d35fcf40b101a1acd1 97 Pfam PF04316 Anti-sigma-28 factor, FlgM 42 87 3.4E-10 T 28-03-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal AM348_RS19940 ea45311d8b4731d35fcf40b101a1acd1 97 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 90 7.4E-19 T 28-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AM348_RS19940 ea45311d8b4731d35fcf40b101a1acd1 97 SUPERFAMILY SSF101498 2 88 1.83E-13 T 28-03-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 SUPERFAMILY SSF116726 322 391 1.57E-15 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 Gene3D G3DSA:3.30.70.1450 217 306 3.4E-12 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 SUPERFAMILY SSF116726 231 292 7.19E-8 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 Pfam PF02080 TrkA-C domain 326 387 4.7E-10 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 Pfam PF02080 TrkA-C domain 231 303 1.3E-12 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 Pfam PF03600 Citrate transporter 430 606 8.2E-21 T 28-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 Pfam PF03600 Citrate transporter 16 197 4.1E-37 T 28-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 Gene3D G3DSA:3.30.70.1450 322 395 9.6E-15 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS12560 c97c2b64ee7c1ffdef65a7c8588bb9b2 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 28-03-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 AM348_RS04540 69aad5a5b83c8dcefa356adca684b781 309 Gene3D G3DSA:3.40.50.1820 2 302 4.8E-53 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS04540 69aad5a5b83c8dcefa356adca684b781 309 SUPERFAMILY SSF53474 25 297 9.51E-63 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS04540 69aad5a5b83c8dcefa356adca684b781 309 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 147 159 - T 28-03-2018 IPR033140 Lipase, GDXG, putative serine active site AM348_RS04540 69aad5a5b83c8dcefa356adca684b781 309 Pfam PF07859 alpha/beta hydrolase fold 75 280 7.6E-67 T 28-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 Gene3D G3DSA:1.10.1140.10 348 458 1.5E-45 T 28-03-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 28-03-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 SUPERFAMILY SSF50615 3 75 1.75E-24 T 28-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 SUPERFAMILY SSF47917 345 459 4.45E-55 T 28-03-2018 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 Gene3D G3DSA:2.40.10.170 1 75 5.7E-30 T 28-03-2018 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 Gene3D G3DSA:3.40.50.300 76 347 7.2E-91 T 28-03-2018 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 SMART SM00382 142 327 4.2E-4 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 3.8E-64 T 28-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 SUPERFAMILY SSF52540 77 348 1.02E-90 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.961 T 28-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 1.0E-262 T 28-03-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 AM348_RS05285 a9387f5ce9366b76e6bafb796a2f303b 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 3.6E-20 T 28-03-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 Gene3D G3DSA:1.10.10.60 227 280 8.5E-16 T 28-03-2018 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 225 267 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 Pfam PF12833 Helix-turn-helix domain 194 273 7.3E-20 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 SUPERFAMILY SSF46689 172 221 5.97E-5 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 271 2.6E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 255 2.6E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 SUPERFAMILY SSF46689 225 276 8.06E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 SMART SM00342 188 271 3.8E-30 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04150 663f0b18cac966393ede022fbb892a82 286 Gene3D G3DSA:2.60.120.10 38 226 6.6E-17 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS08210 3c1d5c7dfd9c0b5066851ab7dec02b5c 196 Gene3D G3DSA:3.40.50.10490 1 196 8.6E-37 T 28-03-2018 AM348_RS08210 3c1d5c7dfd9c0b5066851ab7dec02b5c 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 62.011 T 28-03-2018 IPR023070 DnaA initiator-associating protein AM348_RS08210 3c1d5c7dfd9c0b5066851ab7dec02b5c 196 SUPERFAMILY SSF53697 3 191 7.28E-51 T 28-03-2018 AM348_RS08210 3c1d5c7dfd9c0b5066851ab7dec02b5c 196 Pfam PF13580 SIS domain 9 144 3.2E-33 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS21235 0e5bc9112671796a7c064eed4f09364c 473 Pfam PF00939 Sodium:sulfate symporter transmembrane region 10 471 6.4E-120 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS21235 0e5bc9112671796a7c064eed4f09364c 473 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 28 467 1.0E-106 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS21235 0e5bc9112671796a7c064eed4f09364c 473 PIRSF PIRSF002457 1 473 3.1E-145 T 28-03-2018 IPR030676 Citrate carrier CitT-related AM348_RS07925 270fec3591847ad7fa067d178116ae6b 163 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 13 155 5.2E-37 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS07925 270fec3591847ad7fa067d178116ae6b 163 Gene3D G3DSA:3.40.930.10 8 157 1.2E-37 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS07925 270fec3591847ad7fa067d178116ae6b 163 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 58 74 - T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS07925 270fec3591847ad7fa067d178116ae6b 163 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 9 155 4.7E-62 T 28-03-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 AM348_RS07925 270fec3591847ad7fa067d178116ae6b 163 SUPERFAMILY SSF55804 9 155 7.06E-42 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Pfam PF07676 WD40-like Beta Propeller Repeat 369 396 0.0032 T 28-03-2018 IPR011659 WD40-like Beta Propeller AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 4.3E-5 T 28-03-2018 IPR011659 WD40-like Beta Propeller AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Pfam PF07676 WD40-like Beta Propeller Repeat 281 315 4.4E-10 T 28-03-2018 IPR011659 WD40-like Beta Propeller AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.8E-9 T 28-03-2018 IPR011659 WD40-like Beta Propeller AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 SUPERFAMILY SSF69304 155 428 2.88E-53 T 28-03-2018 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 15 427 2.5E-156 T 28-03-2018 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Gene3D G3DSA:2.130.10.150 258 429 6.9E-32 T 28-03-2018 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Hamap MF_00671 Protein TolB [tolB]. 5 426 34.519 T 28-03-2018 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 SUPERFAMILY SSF52964 28 161 4.45E-40 T 28-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Gene3D G3DSA:3.40.50.10070 22 162 6.7E-38 T 28-03-2018 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Pfam PF04052 TolB amino-terminal domain 23 121 5.6E-32 T 28-03-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 AM348_RS21545 e0b064bff096e09d9a0ded2319f5ca8a 430 Gene3D G3DSA:2.130.10.10 163 257 4.0E-9 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 SUPERFAMILY SSF55874 325 489 5.89E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 386 490 1.4E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 SMART SM00387 381 491 8.0E-25 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 Pfam PF00512 His Kinase A (phospho-acceptor) domain 268 335 7.9E-17 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 SUPERFAMILY SSF47384 250 336 8.63E-19 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 Gene3D G3DSA:3.30.450.20 35 169 6.4E-7 T 28-03-2018 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 SMART SM00388 267 335 5.0E-19 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 470 4.1E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 4.1E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 432 4.1E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 Gene3D G3DSA:3.30.565.10 339 495 8.0E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS17905 0030e6a081e4ee533eaec1367d8c5a47 496 Gene3D G3DSA:1.10.287.130 258 331 1.4E-15 T 28-03-2018 AM348_RS17050 da3daf01b75459e2f8017504d25270f6 198 Gene3D G3DSA:3.40.50.150 1 197 1.6E-32 T 28-03-2018 AM348_RS17050 da3daf01b75459e2f8017504d25270f6 198 SUPERFAMILY SSF53335 5 196 7.72E-35 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS17050 da3daf01b75459e2f8017504d25270f6 198 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 3 196 4.3E-105 T 28-03-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 AM348_RS17050 da3daf01b75459e2f8017504d25270f6 198 Pfam PF03848 Tellurite resistance protein TehB 3 193 3.2E-103 T 28-03-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 35.046 T 28-03-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 SMART SM00962 100 296 6.3E-120 T 28-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 SMART SM00963 1 86 2.9E-37 T 28-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Gene3D G3DSA:3.40.50.300 92 297 6.3E-40 T 28-03-2018 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 1.1E-75 T 28-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Gene3D G3DSA:1.10.260.30 328 432 4.2E-39 T 28-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.8E-23 T 28-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 SUPERFAMILY SSF47446 329 431 5.07E-39 T 28-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 SMART SM00382 99 247 7.8E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Gene3D G3DSA:1.20.120.140 1 91 1.3E-30 T 28-03-2018 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 Pfam PF02978 Signal peptide binding domain 329 427 2.0E-33 T 28-03-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 SUPERFAMILY SSF52540 42 354 1.73E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11065 676878289882620a85eeb4abde30bce0 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 28-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS11065 676878289882620a85eeb4abde30bce0 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 1.0E-181 T 28-03-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 806 3.3E-303 T 28-03-2018 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 Gene3D G3DSA:3.40.50.300 670 790 0.0019 T 28-03-2018 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 Gene3D G3DSA:1.10.10.160 86 185 2.1E-32 T 28-03-2018 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 SUPERFAMILY SSF52980 820 1120 3.16E-97 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 SUPERFAMILY SSF52540 1 346 1.01E-127 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 SUPERFAMILY SSF52540 370 811 3.93E-106 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1087 0.0 T 28-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 PIRSF PIRSF000980 1 1122 0.0 T 28-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1122 21.07 T 28-03-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 AM348_RS09785 29a7e3e31c60f6a42cc120d497b2dc4e 1122 Gene3D G3DSA:1.10.486.10 442 650 7.7E-71 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 1.9E-10 T 28-03-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 28-03-2018 IPR033136 NAD-dependent DNA ligase, conserved site AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:3.30.1490.70 243 321 1.5E-23 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 665 1.2E-277 T 28-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SUPERFAMILY SSF50249 318 400 6.51E-29 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SUPERFAMILY SSF47781 404 583 2.34E-62 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SMART SM00278 446 465 67.0 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SMART SM00278 544 563 19.0 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SMART SM00278 480 499 1.3 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SMART SM00278 512 531 550.0 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SMART SM00532 3 448 4.6E-296 T 28-03-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:3.30.470.30 119 242 7.8E-53 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SMART SM00292 595 670 2.3E-13 T 28-03-2018 IPR001357 BRCT domain AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SUPERFAMILY SSF52113 596 669 4.09E-19 T 28-03-2018 IPR001357 BRCT domain AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 SUPERFAMILY SSF56091 2 316 1.01E-123 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 3 318 1.2E-141 T 28-03-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:3.40.50.10190 572 670 1.4E-24 T 28-03-2018 IPR001357 BRCT domain AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 PIRSF PIRSF001604 1 671 1.6E-256 T 28-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 28-03-2018 IPR018239 NAD-dependent DNA ligase, active site AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Pfam PF12826 Helix-hairpin-helix motif 510 573 2.4E-23 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Hamap MF_01588 DNA ligase [ligA]. 2 669 54.562 T 28-03-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 596 668 4.0E-12 T 28-03-2018 IPR001357 BRCT domain AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:1.10.150.20 506 571 2.2E-27 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Pfam PF14520 Helix-hairpin-helix domain 446 502 2.0E-5 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:2.40.50.140 322 390 1.1E-34 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:1.10.287.610 1 67 4.2E-27 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Gene3D G3DSA:1.10.150.20 432 505 5.1E-26 T 28-03-2018 AM348_RS12030 8db5cafa642a9de65998a1164eb8e9ba 671 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 1.2E-35 T 28-03-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 459 476 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Gene3D G3DSA:3.90.55.10 8 93 1.4E-9 T 28-03-2018 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Gene3D G3DSA:3.90.55.10 492 567 5.5E-18 T 28-03-2018 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 675 702 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Gene3D G3DSA:3.40.228.10 151 408 2.5E-59 T 28-03-2018 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Gene3D G3DSA:3.40.228.10 409 491 2.6E-6 T 28-03-2018 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 13 775 0.0 T 28-03-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 SUPERFAMILY SSF50692 631 774 1.58E-37 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Pfam PF00384 Molybdopterin oxidoreductase 56 517 9.8E-110 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Gene3D G3DSA:2.40.40.20 612 771 7.3E-29 T 28-03-2018 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 SUPERFAMILY SSF53706 14 633 7.07E-159 T 28-03-2018 AM348_RS06245 7d8e6e3496ce9fdce62a8d8c4113ada0 777 Pfam PF01568 Molydopterin dinucleotide binding domain 636 742 2.2E-24 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS11595 fb364111e2df7522c09b3cdebcbc1717 206 SUPERFAMILY SSF48452 88 186 1.76E-6 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS11595 fb364111e2df7522c09b3cdebcbc1717 206 Pfam PF09976 Tetratricopeptide repeat-like domain 15 205 2.8E-55 T 28-03-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 AM348_RS11595 fb364111e2df7522c09b3cdebcbc1717 206 PIRSF PIRSF006170 1 206 2.3E-58 T 28-03-2018 IPR026039 Uncharacterised protein family UPF0070 AM348_RS11595 fb364111e2df7522c09b3cdebcbc1717 206 Gene3D G3DSA:1.25.40.10 36 196 2.0E-8 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 Gene3D G3DSA:3.40.50.720 139 299 1.7E-22 T 28-03-2018 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 3 335 2.9E-156 T 28-03-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 SMART SM00829 13 332 4.8E-9 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 SUPERFAMILY SSF51735 116 286 1.09E-33 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 SUPERFAMILY SSF50129 1 141 2.67E-30 T 28-03-2018 IPR011032 GroES-like AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 148 169 - T 28-03-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 Pfam PF13602 Zinc-binding dehydrogenase 193 332 8.0E-22 T 28-03-2018 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 Gene3D G3DSA:3.90.180.10 1 138 2.6E-27 T 28-03-2018 AM348_RS05655 0239cff91bb91e4e7ce592e742881753 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 89 3.4E-7 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS22470 c2eda25ac502c74d3964dfb6e3954425 372 SUPERFAMILY SSF55931 4 369 3.07E-102 T 28-03-2018 AM348_RS22470 c2eda25ac502c74d3964dfb6e3954425 372 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 294 2.2E-108 T 28-03-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM348_RS22470 c2eda25ac502c74d3964dfb6e3954425 372 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 290 1.7E-80 T 28-03-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM348_RS22470 c2eda25ac502c74d3964dfb6e3954425 372 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 372 88.017 T 28-03-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 Gene3D G3DSA:1.20.120.530 79 245 7.1E-23 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 Pfam PF07729 FCD domain 99 226 1.2E-17 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.5E-25 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 Gene3D G3DSA:1.10.10.10 2 76 5.2E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.9E-11 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.9E-11 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 SMART SM00895 99 227 1.2E-16 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 SUPERFAMILY SSF48008 95 234 3.14E-20 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 SUPERFAMILY SSF46785 6 76 4.28E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01095 5da017fab10c8196715bb48a4a2d0eb8 254 SMART SM00345 15 74 3.0E-29 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 Gene3D G3DSA:2.30.30.240 102 177 1.0E-22 T 28-03-2018 AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 SUPERFAMILY SSF50447 13 99 1.02E-24 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.666 T 28-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 Pfam PF01782 RimM N-terminal domain 16 96 4.5E-27 T 28-03-2018 IPR002676 RimM protein GO:0006364 AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 SUPERFAMILY SSF50346 106 182 1.16E-19 T 28-03-2018 IPR011033 PRC-barrel-like AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 Pfam PF05239 PRC-barrel domain 105 177 1.5E-9 T 28-03-2018 IPR027275 PRC-barrel domain AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 Gene3D G3DSA:2.40.30.60 12 100 9.9E-28 T 28-03-2018 IPR002676 RimM protein GO:0006364 AM348_RS11075 a953f24e5fd372748a82676f474d2505 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 1.2E-61 T 28-03-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 AM348_RS13760 04e5314b41f6f170f665d07d15d46168 464 Gene3D G3DSA:3.40.50.720 141 263 2.1E-12 T 28-03-2018 AM348_RS13760 04e5314b41f6f170f665d07d15d46168 464 Pfam PF02397 Bacterial sugar transferase 274 456 2.9E-66 T 28-03-2018 IPR003362 Bacterial sugar transferase AM348_RS13760 04e5314b41f6f170f665d07d15d46168 464 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 41 464 6.0E-148 T 28-03-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AM348_RS13760 04e5314b41f6f170f665d07d15d46168 464 Pfam PF13727 CoA-binding domain 65 238 2.0E-37 T 28-03-2018 AM348_RS13760 04e5314b41f6f170f665d07d15d46168 464 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 33 464 8.9E-164 T 28-03-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 AM348_RS20395 830ad30408d1ce79b64c31481180ed4f 249 SUPERFAMILY SSF46785 44 124 2.09E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20395 830ad30408d1ce79b64c31481180ed4f 249 Gene3D G3DSA:1.10.10.10 61 230 2.2E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02645 8b003e3536432b69f4f76978abc1729b 669 Gene3D G3DSA:2.40.170.20 191 669 3.2E-69 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS02645 8b003e3536432b69f4f76978abc1729b 669 Pfam PF00593 TonB dependent receptor 223 667 9.9E-54 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS02645 8b003e3536432b69f4f76978abc1729b 669 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 162 2.3E-26 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS02645 8b003e3536432b69f4f76978abc1729b 669 SUPERFAMILY SSF56935 35 669 1.49E-115 T 28-03-2018 AM348_RS02645 8b003e3536432b69f4f76978abc1729b 669 Gene3D G3DSA:2.170.130.10 27 169 9.3E-35 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 Gene3D G3DSA:1.10.260.40 2 54 6.3E-23 T 28-03-2018 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 Gene3D G3DSA:3.40.50.2300 55 175 2.4E-29 T 28-03-2018 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 SUPERFAMILY SSF47413 1 59 6.97E-19 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.0E-5 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.0E-5 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 SMART SM00354 1 71 4.0E-32 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.0E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 Pfam PF13377 Periplasmic binding protein-like domain 169 329 4.2E-31 T 28-03-2018 AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 SUPERFAMILY SSF53822 61 330 2.2E-74 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS09695 007dcde17788cb3353909b7091cba28f 336 Gene3D G3DSA:3.40.50.2300 176 313 6.2E-43 T 28-03-2018 AM348_RS16860 07b6e7929091dbe0b7657eda5493f705 479 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS16860 07b6e7929091dbe0b7657eda5493f705 479 Gene3D G3DSA:3.40.309.10 266 445 3.4E-67 T 28-03-2018 AM348_RS16860 07b6e7929091dbe0b7657eda5493f705 479 SUPERFAMILY SSF53720 3 478 9.42E-159 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS16860 07b6e7929091dbe0b7657eda5493f705 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS16860 07b6e7929091dbe0b7657eda5493f705 479 Pfam PF00171 Aldehyde dehydrogenase family 22 475 1.3E-165 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS16860 07b6e7929091dbe0b7657eda5493f705 479 Gene3D G3DSA:3.40.605.10 1 265 1.3E-92 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS16125 cfa22ff2f14672e9fa0de38a46df719e 85 Pfam PF06440 DNA polymerase III, theta subunit 3 70 3.2E-36 T 28-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS16125 cfa22ff2f14672e9fa0de38a46df719e 85 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 5 69 7.0E-25 T 28-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS16125 cfa22ff2f14672e9fa0de38a46df719e 85 Gene3D G3DSA:1.20.58.250 4 66 1.2E-35 T 28-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS16125 cfa22ff2f14672e9fa0de38a46df719e 85 SUPERFAMILY SSF46575 1 77 7.06E-36 T 28-03-2018 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 SUPERFAMILY SSF46548 655 691 1.31E-8 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 SUPERFAMILY SSF46548 517 622 1.31E-8 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Pfam PF01565 FAD binding domain 52 192 6.5E-36 T 28-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Gene3D G3DSA:1.10.1060.10 541 703 4.4E-13 T 28-03-2018 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Pfam PF13183 4Fe-4S dicluster domain 576 687 4.0E-12 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 282 539 5.6E-63 T 28-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Gene3D G3DSA:1.10.45.10 501 539 2.6E-8 T 28-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 SUPERFAMILY SSF55103 257 543 8.99E-53 T 28-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Gene3D G3DSA:3.30.43.10 4 104 4.0E-18 T 28-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 673 684 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 SUPERFAMILY SSF56176 18 282 4.09E-54 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS18695 49a20b03485c5751067c3cf5c77d7fe7 1018 Gene3D G3DSA:3.30.465.10 105 304 2.1E-43 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS05895 749b623bd20d47e504350706e9d49d79 374 Gene3D G3DSA:3.40.50.2000 170 355 1.5E-34 T 28-03-2018 AM348_RS05895 749b623bd20d47e504350706e9d49d79 374 Pfam PF00534 Glycosyl transferases group 1 183 350 3.0E-29 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS05895 749b623bd20d47e504350706e9d49d79 374 SUPERFAMILY SSF53756 3 355 1.52E-54 T 28-03-2018 AM348_RS07140 0845c602fecd7005f91fb3f4cb2fec91 108 Gene3D G3DSA:2.102.10.10 1 108 9.8E-17 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS07140 0845c602fecd7005f91fb3f4cb2fec91 108 SUPERFAMILY SSF50022 1 107 3.6E-34 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS07140 0845c602fecd7005f91fb3f4cb2fec91 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 4.4E-40 T 28-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM348_RS07140 0845c602fecd7005f91fb3f4cb2fec91 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 106 7.0E-40 T 28-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 13 276 33.811 T 28-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 Pfam PF02634 FdhD/NarQ family 38 275 1.1E-72 T 28-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 Gene3D G3DSA:3.40.140.10 142 278 1.6E-42 T 28-03-2018 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 275 4.8E-99 T 28-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 PIRSF PIRSF015626 5 277 5.1E-84 T 28-03-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 SUPERFAMILY SSF53927 23 276 2.5E-80 T 28-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM348_RS04495 e7794997e901e5cb1ee17992c8b9a22c 278 Gene3D G3DSA:3.10.20.10 40 126 1.0E-22 T 28-03-2018 AM348_RS16665 754949ad51e91c0a300f07b0ead86a9a 537 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 453 5.1E-85 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS16665 754949ad51e91c0a300f07b0ead86a9a 537 PIRSF PIRSF002741 3 537 1.8E-108 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS16665 754949ad51e91c0a300f07b0ead86a9a 537 Gene3D G3DSA:3.90.76.10 59 171 1.5E-33 T 28-03-2018 AM348_RS16665 754949ad51e91c0a300f07b0ead86a9a 537 Gene3D G3DSA:3.10.105.10 306 506 1.2E-58 T 28-03-2018 AM348_RS16665 754949ad51e91c0a300f07b0ead86a9a 537 SUPERFAMILY SSF53850 32 528 1.02E-136 T 28-03-2018 AM348_RS16665 754949ad51e91c0a300f07b0ead86a9a 537 Gene3D G3DSA:3.40.190.10 172 305 2.7E-31 T 28-03-2018 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PIRSF PIRSF000114 1 336 1.5E-100 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 163 1.2E-49 T 28-03-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 Gene3D G3DSA:1.10.1040.10 193 339 6.6E-53 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 2.4E-52 T 28-03-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.354 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 Gene3D G3DSA:3.40.50.720 1 181 6.8E-39 T 28-03-2018 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 SUPERFAMILY SSF48179 184 335 5.1E-57 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 SUPERFAMILY SSF51735 8 182 4.07E-52 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 7.6E-42 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 7.6E-42 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 7.6E-42 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 7.6E-42 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 7.6E-42 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS05985 935772b1b08943023a49eb5ac4d50b2c 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 7.6E-42 T 28-03-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 255 281 - T 28-03-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 SUPERFAMILY SSF52402 6 177 1.88E-21 T 28-03-2018 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 Gene3D G3DSA:3.40.50.1220 186 313 1.5E-46 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 PIRSF PIRSF000089 3 313 2.8E-81 T 28-03-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 3.6E-29 T 28-03-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 SMART SM00893 7 180 1.2E-13 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 Gene3D G3DSA:3.40.50.620 2 181 3.4E-23 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 Pfam PF01012 Electron transfer flavoprotein domain 22 169 1.5E-14 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 Hamap MF_01056 Protein FixB [fixB]. 1 313 58.115 T 28-03-2018 IPR023461 Electron transfer flavoprotein FixB subunit GO:0009437 AM348_RS01480 7e06cc2857269237a46849b4686cf400 313 SUPERFAMILY SSF52467 190 310 2.29E-40 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS15575 0c5acfd7e058644a291d6e1d96192d3b 656 Gene3D G3DSA:2.40.170.20 151 656 2.2E-51 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS15575 0c5acfd7e058644a291d6e1d96192d3b 656 Gene3D G3DSA:2.170.130.10 33 150 2.3E-25 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS15575 0c5acfd7e058644a291d6e1d96192d3b 656 Pfam PF07715 TonB-dependent Receptor Plug Domain 37 139 2.3E-21 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS15575 0c5acfd7e058644a291d6e1d96192d3b 656 SUPERFAMILY SSF56935 36 656 2.96E-89 T 28-03-2018 AM348_RS15575 0c5acfd7e058644a291d6e1d96192d3b 656 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 639 656 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS15575 0c5acfd7e058644a291d6e1d96192d3b 656 Pfam PF00593 TonB dependent receptor 240 655 2.3E-32 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS02550 9606128d1717ec475588a573aa87c3ac 120 Gene3D G3DSA:3.40.1400.10 13 119 4.4E-4 T 28-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AM348_RS02550 9606128d1717ec475588a573aa87c3ac 120 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 2.3E-68 T 28-03-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 AM348_RS02550 9606128d1717ec475588a573aa87c3ac 120 Pfam PF14272 Glycine-rich SFCGS 4 117 2.7E-60 T 28-03-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 SMART SM00267 288 460 3.9E-53 T 28-03-2018 IPR000160 GGDEF domain AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 Gene3D G3DSA:3.30.70.270 293 462 8.2E-50 T 28-03-2018 AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 SUPERFAMILY SSF46458 37 139 4.89E-16 T 28-03-2018 IPR009050 Globin-like AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 Pfam PF11563 Protoglobin 20 161 5.7E-11 T 28-03-2018 AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 SUPERFAMILY SSF55073 304 461 3.3E-45 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 Pfam PF00990 Diguanylate cyclase, GGDEF domain 302 456 1.7E-44 T 28-03-2018 IPR000160 GGDEF domain AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 300 459 4.2E-50 T 28-03-2018 IPR000160 GGDEF domain AM348_RS00135 17580a147f081439039143efa2f2ee9a 462 Gene3D G3DSA:1.10.490.10 22 193 9.6E-12 T 28-03-2018 AM348_RS18285 57737cea50e65c5ef46139d884b67fd1 401 SUPERFAMILY SSF103473 7 374 2.35E-57 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18285 57737cea50e65c5ef46139d884b67fd1 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 379 1.1E-135 T 28-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM348_RS18285 57737cea50e65c5ef46139d884b67fd1 401 Gene3D G3DSA:1.20.1250.20 6 196 3.0E-29 T 28-03-2018 AM348_RS18285 57737cea50e65c5ef46139d884b67fd1 401 Pfam PF07690 Major Facilitator Superfamily 14 341 2.3E-40 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS18285 57737cea50e65c5ef46139d884b67fd1 401 Gene3D G3DSA:1.20.1250.20 198 394 1.8E-13 T 28-03-2018 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 300 337 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 SUPERFAMILY SSF53383 103 482 3.3E-120 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 Pfam PF00202 Aminotransferase class-III 106 481 4.5E-105 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 PIRSF PIRSF000521 87 208 1.8E-4 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 PIRSF PIRSF000521 196 484 2.2E-42 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 Gene3D G3DSA:3.40.640.10 123 371 1.1E-84 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 Gene3D G3DSA:3.90.1150.10 372 491 2.5E-26 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 TIGRFAM TIGR03372 putres_am_tran: putrescine aminotransferase 40 481 5.1E-289 T 28-03-2018 IPR017747 Putrescine aminotransferase GO:0009447|GO:0030170|GO:0033094 KEGG: 00330+2.6.1.82|MetaCyc: PWY-2|MetaCyc: PWY-6440 AM348_RS08505 bb1a5376561c804e48a69f015a1d81b9 491 Hamap MF_01276 Putrescine aminotransferase [patA]. 33 491 88.16 T 28-03-2018 IPR017747 Putrescine aminotransferase GO:0009447|GO:0030170|GO:0033094 KEGG: 00330+2.6.1.82|MetaCyc: PWY-2|MetaCyc: PWY-6440 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 58 272 1.4E-11 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 302 516 1.4E-20 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SUPERFAMILY SSF47384 579 663 2.16E-16 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SUPERFAMILY SSF55874 652 821 4.06E-40 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:1.10.287.130 587 656 7.6E-14 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SUPERFAMILY SSF53850 48 275 1.72E-21 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SUPERFAMILY SSF52172 844 960 1.32E-31 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SMART SM00387 709 823 5.5E-33 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SUPERFAMILY SSF53850 302 518 5.26E-28 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 710 822 4.6E-28 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Pfam PF00072 Response regulator receiver domain 846 954 4.5E-26 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Pfam PF00512 His Kinase A (phospho-acceptor) domain 596 662 1.4E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:3.40.50.2300 837 964 7.9E-34 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Pfam PF01627 Hpt domain 989 1062 6.9E-10 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SMART SM00062 55 277 0.0024 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SMART SM00062 301 520 3.3E-20 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SUPERFAMILY SSF47226 938 1060 3.93E-16 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:3.40.190.10 39 274 2.2E-12 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:3.40.190.10 286 400 1.2E-11 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:3.30.565.10 657 823 1.2E-43 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SMART SM00448 844 955 4.1E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:3.40.190.10 401 474 2.9E-6 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 Gene3D G3DSA:1.20.120.160 967 1079 4.0E-13 T 28-03-2018 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 SMART SM00388 596 662 2.6E-18 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 PRINTS PR00344 Bacterial sensor protein C-terminal signature 750 764 6.4E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 PRINTS PR00344 Bacterial sensor protein C-terminal signature 807 820 6.4E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10890 09fad04ef2e213a2ba48e98ed5f0a196 1080 PRINTS PR00344 Bacterial sensor protein C-terminal signature 783 801 6.4E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Gene3D G3DSA:2.40.50.140 129 198 2.2E-13 T 28-03-2018 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SUPERFAMILY SSF47794 355 415 2.04E-17 T 28-03-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 1.9E-9 T 28-03-2018 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SUPERFAMILY SSF69705 1 126 7.46E-41 T 28-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SUPERFAMILY SSF47794 429 492 3.14E-18 T 28-03-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SUPERFAMILY SSF50249 132 199 2.53E-17 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 2.8E-130 T 28-03-2018 IPR010213 Transcription termination factor NusA GO:0003723 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SUPERFAMILY SSF54814 279 343 3.18E-15 T 28-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Gene3D G3DSA:3.30.300.20 278 347 1.9E-12 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SUPERFAMILY SSF54814 201 278 3.73E-29 T 28-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Pfam PF08529 NusA N-terminal domain 4 123 1.4E-36 T 28-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 SMART SM00316 133 200 1.7E-8 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Pfam PF13184 NusA-like KH domain 230 297 1.6E-27 T 28-03-2018 IPR025249 KH domain, NusA-like GO:0003723 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 29.224 T 28-03-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Gene3D G3DSA:3.30.1480.10 1 128 7.8E-45 T 28-03-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Gene3D G3DSA:1.10.150.20 427 495 1.9E-17 T 28-03-2018 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Gene3D G3DSA:1.10.150.20 352 421 2.0E-15 T 28-03-2018 AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 440 489 2.5E-19 T 28-03-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 1.6E-20 T 28-03-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication AM348_RS08120 d227724025e4289f05037b7d29ff2652 495 Gene3D G3DSA:3.30.300.20 199 276 6.2E-33 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Gene3D G3DSA:3.40.50.970 591 800 7.3E-58 T 28-03-2018 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Gene3D G3DSA:1.10.287.1150 83 166 2.0E-23 T 28-03-2018 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Pfam PF00676 Dehydrogenase E1 component 218 511 1.6E-48 T 28-03-2018 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Reactome: R-HSA-389661 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 789 930 5.0E-53 T 28-03-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 PIRSF PIRSF000157 1 932 0.0 T 28-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 SUPERFAMILY SSF52518 575 791 2.27E-52 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.5E-15 T 28-03-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 SMART SM00861 591 784 3.9E-65 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 SUPERFAMILY SSF52518 120 545 3.46E-88 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Gene3D G3DSA:3.40.50.970 167 518 7.3E-94 T 28-03-2018 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 930 0.0 T 28-03-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 AM348_RS21715 bbaefca36b5a931ffc3f63296d5d668e 933 Pfam PF02779 Transketolase, pyrimidine binding domain 591 785 6.7E-67 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS15110 790b020fc58636dbe445f20005221d46 188 Gene3D G3DSA:3.40.50.850 3 188 1.8E-45 T 28-03-2018 AM348_RS15110 790b020fc58636dbe445f20005221d46 188 Pfam PF00857 Isochorismatase family 9 182 2.1E-38 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS15110 790b020fc58636dbe445f20005221d46 188 SUPERFAMILY SSF52499 4 188 1.57E-50 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS15505 423ea7ff0f90a91e43438808786ff34a 153 PIRSF PIRSF006173 4 150 6.2E-68 T 28-03-2018 IPR008228 Uncharacterised conserved protein UCP006173 AM348_RS15505 423ea7ff0f90a91e43438808786ff34a 153 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 7 150 42.472 T 28-03-2018 IPR008228 Uncharacterised conserved protein UCP006173 AM348_RS15505 423ea7ff0f90a91e43438808786ff34a 153 Pfam PF03692 Putative zinc- or iron-chelating domain 29 97 5.1E-8 T 28-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 Pfam PF03063 Prismane/CO dehydrogenase family 1 545 8.9E-155 T 28-03-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 2.7E-231 T 28-03-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 SUPERFAMILY SSF56821 1 548 1.16E-189 T 28-03-2018 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 Gene3D G3DSA:1.20.1270.20 150 232 1.8E-21 T 28-03-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 PIRSF PIRSF000076 1 550 1.2E-238 T 28-03-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 21.402 T 28-03-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 Gene3D G3DSA:3.40.50.2030 235 375 1.3E-62 T 28-03-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 Gene3D G3DSA:1.20.1270.20 1 148 1.2E-36 T 28-03-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS13545 3d1a2c20746f3a2d6bf495b49aadc968 550 Gene3D G3DSA:3.40.50.2030 376 550 5.0E-59 T 28-03-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 AM348_RS02465 b5dc5f1840c1369d5a7bbb31ed9d7b55 428 PIRSF PIRSF006066 1 428 4.2E-175 T 28-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 AM348_RS02465 b5dc5f1840c1369d5a7bbb31ed9d7b55 428 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 417 5.6E-113 T 28-03-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit AM348_RS02465 b5dc5f1840c1369d5a7bbb31ed9d7b55 428 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 9.1E-132 T 28-03-2018 IPR004681 TRAP transporter permease protein GO:0016021 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:1.10.10.10 417 480 6.0E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 SUPERFAMILY SSF50447 175 293 3.93E-23 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 SUPERFAMILY SSF46785 488 546 6.87E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Pfam PF00009 Elongation factor Tu GTP binding domain 2 164 1.2E-32 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:1.10.10.10 548 606 9.0E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:1.10.10.10 489 545 2.7E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:2.40.30.10 281 335 1.3E-6 T 28-03-2018 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Pfam PF09106 Elongation factor SelB, winged helix 424 480 9.4E-16 T 28-03-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 SUPERFAMILY SSF46785 417 484 4.08E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:3.40.50.300 50 172 3.3E-22 T 28-03-2018 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.4E-7 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.4E-7 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.4E-7 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.4E-7 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Pfam PF03144 Elongation factor Tu domain 2 189 256 1.1E-8 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:2.40.30.10 173 280 2.5E-21 T 28-03-2018 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 607 4.2E-252 T 28-03-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 SUPERFAMILY SSF52540 2 164 5.31E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Gene3D G3DSA:3.40.50.300 1 49 6.5E-9 T 28-03-2018 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 Pfam PF09107 Elongation factor SelB, winged helix 560 605 3.5E-19 T 28-03-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 SUPERFAMILY SSF46785 551 607 4.28E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06080 9611d266f0a2c789bfa62b9241c525ae 614 SUPERFAMILY SSF50465 269 351 1.58E-7 T 28-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 Gene3D G3DSA:3.40.50.1970 430 643 1.9E-50 T 28-03-2018 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 Gene3D G3DSA:1.20.1090.10 644 868 2.6E-59 T 28-03-2018 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 Pfam PF00171 Aldehyde dehydrogenase family 5 270 9.2E-27 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 SUPERFAMILY SSF56796 449 868 5.36E-118 T 28-03-2018 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 SUPERFAMILY SSF53720 6 453 8.9E-84 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 1.0E-113 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 Gene3D G3DSA:3.40.309.10 230 402 6.2E-26 T 28-03-2018 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 Gene3D G3DSA:3.40.605.10 1 229 3.7E-33 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 PIRSF PIRSF000111 1 866 0.0 T 28-03-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 AM348_RS15945 07b6ecfcf6f4c15f3e724ae12b6b3901 892 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 Pfam PF02120 Flagellar hook-length control protein FliK 277 356 6.0E-19 T 28-03-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 126 149 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 308 323 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 387 403 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 21 38 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 242 264 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 323 346 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 290 308 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 2 15 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 65 81 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14415 958b2ed703b9f96c7aa7ffadf6b99955 404 PRINTS PR01007 Flagellar hook-length control protein signature 265 287 7.2E-93 T 28-03-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 AM348_RS14115 93cc7d2d89348fa1d4fa9ce20c703227 351 SUPERFAMILY SSF159664 224 349 4.32E-32 T 28-03-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 AM348_RS14115 93cc7d2d89348fa1d4fa9ce20c703227 351 Pfam PF01890 Cobalamin synthesis G C-terminus 231 346 2.5E-25 T 28-03-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 AM348_RS14115 93cc7d2d89348fa1d4fa9ce20c703227 351 Pfam PF11760 Cobalamin synthesis G N-terminal 54 134 6.5E-35 T 28-03-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 AM348_RS14115 93cc7d2d89348fa1d4fa9ce20c703227 351 Pfam PF11761 Cobalamin biosynthesis central region 140 215 9.1E-8 T 28-03-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 AM348_RS14115 93cc7d2d89348fa1d4fa9ce20c703227 351 Gene3D G3DSA:3.30.420.180 221 351 3.1E-29 T 28-03-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 AM348_RS14115 93cc7d2d89348fa1d4fa9ce20c703227 351 SUPERFAMILY SSF159672 6 238 1.05E-58 T 28-03-2018 AM348_RS06100 6fb4c7a16599d1151234b8757c5390a4 378 Pfam PF00529 HlyD membrane-fusion protein of T1SS 39 367 4.6E-11 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS06100 6fb4c7a16599d1151234b8757c5390a4 378 Gene3D G3DSA:2.40.50.100 63 155 2.5E-8 T 28-03-2018 AM348_RS06100 6fb4c7a16599d1151234b8757c5390a4 378 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 163 301 1.3E-9 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS06100 6fb4c7a16599d1151234b8757c5390a4 378 Gene3D G3DSA:1.20.1600.10 199 338 9.0E-9 T 28-03-2018 AM348_RS06100 6fb4c7a16599d1151234b8757c5390a4 378 SUPERFAMILY SSF111369 60 139 1.31E-10 T 28-03-2018 AM348_RS06100 6fb4c7a16599d1151234b8757c5390a4 378 SUPERFAMILY SSF111369 166 301 1.7E-5 T 28-03-2018 AM348_RS13355 f3021316534c0c490eeb3cff339c5489 243 SUPERFAMILY SSF46955 3 91 2.61E-19 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS13355 f3021316534c0c490eeb3cff339c5489 243 Pfam PF13411 MerR HTH family regulatory protein 4 72 3.3E-18 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS13355 f3021316534c0c490eeb3cff339c5489 243 SMART SM00422 4 73 8.0E-29 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS13355 f3021316534c0c490eeb3cff339c5489 243 Gene3D G3DSA:1.10.1660.10 1 143 2.0E-24 T 28-03-2018 AM348_RS13355 f3021316534c0c490eeb3cff339c5489 243 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 30 - T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 SUPERFAMILY SSF46689 388 438 3.17E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 Gene3D G3DSA:1.10.8.60 310 382 7.9E-22 T 28-03-2018 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 Pfam PF00072 Response regulator receiver domain 10 118 4.4E-30 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 SUPERFAMILY SSF52540 137 381 2.57E-70 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 Gene3D G3DSA:1.10.10.60 383 440 1.0E-8 T 28-03-2018 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 Pfam PF00158 Sigma-54 interaction domain 137 303 5.2E-72 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 Gene3D G3DSA:3.40.50.2300 2 128 9.7E-34 T 28-03-2018 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 SMART SM00448 7 118 2.3E-34 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 Gene3D G3DSA:3.40.50.300 132 309 2.3E-25 T 28-03-2018 AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 SUPERFAMILY SSF52172 6 181 3.84E-43 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS11365 f46bd7b6bdd79e4f179510df368f546e 445 SMART SM00382 157 300 3.3E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 1.8E-52 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 SUPERFAMILY SSF51905 3 315 3.31E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 8.9E-77 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 Gene3D G3DSA:3.50.50.60 253 321 4.0E-9 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 Gene3D G3DSA:3.50.50.60 129 242 9.0E-23 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 Gene3D G3DSA:3.50.50.60 2 128 1.3E-21 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 4.9E-41 T 28-03-2018 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 4.9E-41 T 28-03-2018 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.9E-41 T 28-03-2018 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 4.9E-41 T 28-03-2018 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 4.9E-41 T 28-03-2018 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 28-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AM348_RS20860 c9245805b3ad4aa9743d0bdf3537b68d 322 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 314 4.3E-124 T 28-03-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 Gene3D G3DSA:1.10.10.10 1 85 3.5E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 6.0E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 SUPERFAMILY SSF46785 3 113 8.52E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 Pfam PF03466 LysR substrate binding domain 91 293 4.3E-36 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 SUPERFAMILY SSF53850 92 295 5.58E-36 T 28-03-2018 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 Gene3D G3DSA:3.40.190.10 91 177 5.9E-20 T 28-03-2018 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 Gene3D G3DSA:3.40.190.10 178 268 1.2E-16 T 28-03-2018 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.7E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.7E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17460 601ce0dd5ed272bd8cdb99cc3b16019b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.7E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PIRSF PIRSF001369 15 389 1.2E-112 T 28-03-2018 IPR024176 Citrate synthase, bacterial-type AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 Gene3D G3DSA:1.10.580.10 28 368 4.7E-83 T 28-03-2018 IPR016142 Citrate synthase-like, large alpha subdomain AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 ProSitePatterns PS00480 Citrate synthase signature. 271 283 - T 28-03-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 21 388 1.3E-168 T 28-03-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 SUPERFAMILY SSF48256 22 382 5.1E-124 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PRINTS PR00143 Citrate synthase signature 139 152 1.8E-37 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PRINTS PR00143 Citrate synthase signature 211 239 1.8E-37 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PRINTS PR00143 Citrate synthase signature 341 355 1.8E-37 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PRINTS PR00143 Citrate synthase signature 264 284 1.8E-37 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PRINTS PR00143 Citrate synthase signature 321 337 1.8E-37 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 PRINTS PR00143 Citrate synthase signature 189 204 1.8E-37 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS00110 d70649b8521d62c584b18f55bba2ea80 389 Pfam PF00285 Citrate synthase, C-terminal domain 22 370 3.9E-115 T 28-03-2018 IPR002020 Citrate synthase GO:0046912 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 SUPERFAMILY SSF53850 90 290 3.02E-37 T 28-03-2018 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.7E-23 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 SUPERFAMILY SSF46785 1 82 1.56E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 Gene3D G3DSA:3.40.190.10 176 265 2.6E-18 T 28-03-2018 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 Gene3D G3DSA:3.40.190.10 87 175 2.4E-20 T 28-03-2018 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 Gene3D G3DSA:1.10.10.10 1 82 8.2E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS11410 e6c3b9280d87a978b32ba46b06717f0d 293 Pfam PF03466 LysR substrate binding domain 90 289 9.7E-41 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 442 74.783 T 28-03-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 Gene3D G3DSA:3.80.30.20 146 383 3.3E-53 T 28-03-2018 IPR023404 Radical SAM, alpha/beta horseshoe AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 4.1E-29 T 28-03-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 SUPERFAMILY SSF102114 127 374 2.35E-64 T 28-03-2018 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 Pfam PF01938 TRAM domain 380 442 1.2E-19 T 28-03-2018 IPR002792 TRAM domain AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 Pfam PF04055 Radical SAM superfamily 153 327 2.9E-27 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 SMART SM00729 149 369 7.5E-64 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 439 1.0E-157 T 28-03-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 153 173 - T 28-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AM348_RS22020 7b31d4fc7519bfd9b14ffcc637e3f85d 476 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 442 1.1E-218 T 28-03-2018 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 Pfam PF08345 Flagellar M-ring protein C-terminal 253 434 9.7E-52 T 28-03-2018 IPR013556 Flagellar M-ring C-terminal AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 Pfam PF01514 Secretory protein of YscJ/FliF family 32 221 1.4E-75 T 28-03-2018 IPR006182 Secretory protein YscJ/FliF AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 Gene3D G3DSA:3.30.70.1530 53 116 2.2E-8 T 28-03-2018 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 PIRSF PIRSF004862 3 557 1.8E-178 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 PRINTS PR01009 Flagellar M-ring protein signature 266 284 1.2E-45 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 PRINTS PR01009 Flagellar M-ring protein signature 122 140 1.2E-45 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 PRINTS PR01009 Flagellar M-ring protein signature 197 215 1.2E-45 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 PRINTS PR01009 Flagellar M-ring protein signature 362 386 1.2E-45 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 PRINTS PR01009 Flagellar M-ring protein signature 154 168 1.2E-45 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS14440 9f01cb4057fc08c8d2a5bbc8e5c29b1c 557 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 7 556 2.6E-214 T 28-03-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Gene3D G3DSA:3.30.413.10 425 560 3.9E-24 T 28-03-2018 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 SUPERFAMILY SSF55124 346 422 8.18E-22 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 331 1.1E-47 T 28-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 430 546 0.21 T 28-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 477 493 - T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 570 58.55 T 28-03-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 SUPERFAMILY SSF55124 13 142 1.08E-25 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Gene3D G3DSA:3.30.413.10 141 345 7.2E-46 T 28-03-2018 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 PRINTS PR00397 Sirohaem Fe-binding site signature 429 447 1.5E-8 T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 PRINTS PR00397 Sirohaem Fe-binding site signature 477 495 1.5E-8 T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 353 417 4.4E-15 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 81 138 2.4E-12 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 558 3.3E-300 T 28-03-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 SUPERFAMILY SSF56014 428 559 1.2E-33 T 28-03-2018 AM348_RS10070 c3b9f1ffc9e642b11fde5044ce3509ef 570 SUPERFAMILY SSF56014 150 344 2.62E-61 T 28-03-2018 AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 SUPERFAMILY SSF46785 3 109 6.61E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 Gene3D G3DSA:3.40.190.10 89 175 1.8E-16 T 28-03-2018 AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.5E-17 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 Pfam PF03466 LysR substrate binding domain 90 291 6.5E-43 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 Gene3D G3DSA:3.40.190.10 176 263 3.5E-22 T 28-03-2018 AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 SUPERFAMILY SSF53850 90 294 1.14E-45 T 28-03-2018 AM348_RS10725 f6f153121d831693ebe0e61cc23fb11a 298 Gene3D G3DSA:1.10.10.10 3 84 1.2E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.236 T 28-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 2.0E-26 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Gene3D G3DSA:3.30.300.30 518 650 5.0E-28 T 28-03-2018 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 SUPERFAMILY SSF56801 11 643 3.79E-192 T 28-03-2018 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Gene3D G3DSA:2.30.38.10 430 515 6.4E-13 T 28-03-2018 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Pfam PF00501 AMP-binding enzyme 83 522 3.0E-97 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Gene3D G3DSA:3.40.50.980 74 266 6.7E-55 T 28-03-2018 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 28-03-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 1.2E-18 T 28-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AM348_RS03420 b01b23a879fe3c6ea37b92bc7b111e60 652 Gene3D G3DSA:3.40.50.980 267 429 3.2E-38 T 28-03-2018 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 SUPERFAMILY SSF53155 188 267 5.1E-20 T 28-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 86 128 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Pfam PF12833 Helix-turn-helix domain 105 182 2.3E-16 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Gene3D G3DSA:3.40.10.10 1 77 4.1E-27 T 28-03-2018 IPR035451 Ada-like domain AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 189 266 1.5E-16 T 28-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 PIRSF PIRSF000409 1 354 1.2E-139 T 28-03-2018 IPR016221 Bifunctional regulatory protein Ada AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 271 349 7.6E-32 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Pfam PF02805 Metal binding domain of Ada 12 75 1.9E-30 T 28-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 269 348 2.2E-37 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 SMART SM00342 99 181 9.3E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Gene3D G3DSA:3.30.160.70 181 264 4.8E-18 T 28-03-2018 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 SUPERFAMILY SSF57884 4 91 2.09E-33 T 28-03-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 SUPERFAMILY SSF46767 268 348 2.22E-30 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 SUPERFAMILY SSF46689 85 132 4.26E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Gene3D G3DSA:1.10.10.10 265 350 8.1E-33 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Gene3D G3DSA:1.10.10.60 138 180 0.022 T 28-03-2018 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 Gene3D G3DSA:1.10.10.60 80 137 9.7E-19 T 28-03-2018 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 136 177 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS12850 155732614fc413ae9e780f3a6d974c19 354 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 319 325 - T 28-03-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM348_RS13060 daf7904fe380d30ec15ffc995088e437 328 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 242 321 2.5E-5 T 28-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM348_RS13060 daf7904fe380d30ec15ffc995088e437 328 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 169 2.2E-39 T 28-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM348_RS13060 daf7904fe380d30ec15ffc995088e437 328 SMART SM00833 240 323 0.0049 T 28-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM348_RS13060 daf7904fe380d30ec15ffc995088e437 328 SUPERFAMILY SSF52540 6 188 2.36E-25 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13060 daf7904fe380d30ec15ffc995088e437 328 Gene3D G3DSA:3.40.50.300 1 195 8.9E-29 T 28-03-2018 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 2.6E-35 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 8 167 39.45 T 28-03-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 4 83 1.6E-16 T 28-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 28-03-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 SUPERFAMILY SSF46767 86 169 5.23E-34 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 6.1E-39 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 SUPERFAMILY SSF53155 6 91 6.67E-7 T 28-03-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 Gene3D G3DSA:3.30.160.70 5 79 3.2E-5 T 28-03-2018 AM348_RS16730 7a2edff0ce5316a76dbb59ba321fcd14 171 Gene3D G3DSA:1.10.10.10 84 170 3.0E-37 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 62 196 8.1E-12 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 SUPERFAMILY SSF56784 4 223 2.76E-49 T 28-03-2018 IPR023214 HAD-like domain AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 1.0E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 1.0E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 185 198 1.0E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 5 222 1.2E-72 T 28-03-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 110 190 3.7E-17 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 Gene3D G3DSA:3.40.50.1000 87 226 4.1E-36 T 28-03-2018 IPR023214 HAD-like domain AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 79 195 1.1E-21 T 28-03-2018 IPR023214 HAD-like domain AM348_RS01835 2c7d4d6437922cb2025c0059159af162 226 Gene3D G3DSA:1.10.150.240 16 86 2.7E-18 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 SUPERFAMILY SSF54862 38 325 1.42E-70 T 28-03-2018 AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 Gene3D G3DSA:3.30.70.20 169 299 5.7E-14 T 28-03-2018 AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 Gene3D G3DSA:3.30.70.20 51 127 3.7E-16 T 28-03-2018 AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 1 26 1.9E-4 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 Gene3D G3DSA:3.30.70.20 26 50 0.026 T 28-03-2018 AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 Gene3D G3DSA:3.30.70.20 128 168 1.5E-17 T 28-03-2018 AM348_RS08985 12746970606825f85fe3574a3ffb57b8 328 Pfam PF13247 4Fe-4S dicluster domain 106 207 8.2E-23 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SMART SM00073 824 921 8.6E-6 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 607 1.3E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 648 661 1.3E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 624 642 1.3E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 621 1.3E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SMART SM00387 557 664 1.1E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 557 663 4.4E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SMART SM00304 354 407 7.7E-5 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SMART SM00388 443 508 3.9E-20 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SUPERFAMILY SSF47384 427 508 1.65E-19 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SUPERFAMILY SSF55874 497 663 1.83E-41 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 PIRSF PIRSF036437 1 920 0.0 T 28-03-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 TIGRFAM TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS 4 891 3.1E-286 T 28-03-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Pfam PF00072 Response regulator receiver domain 685 793 2.8E-14 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Pfam PF01627 Hpt domain 834 891 5.6E-9 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SUPERFAMILY SSF47226 812 914 5.36E-16 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Gene3D G3DSA:1.10.287.130 440 503 7.9E-19 T 28-03-2018 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Gene3D G3DSA:3.30.565.10 514 667 3.5E-45 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SUPERFAMILY SSF52172 680 800 3.84E-22 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 SMART SM00448 682 794 2.1E-13 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Gene3D G3DSA:1.20.120.160 355 439 0.3 T 28-03-2018 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Pfam PF00512 His Kinase A (phospho-acceptor) domain 443 508 1.3E-17 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Gene3D G3DSA:3.40.50.2300 668 803 4.6E-23 T 28-03-2018 AM348_RS22675 1a6b23aa734aefd870b841b7cb72a3a2 921 Gene3D G3DSA:1.20.120.160 805 920 1.9E-11 T 28-03-2018 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 SUPERFAMILY SSF51905 179 263 3.52E-34 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 SUPERFAMILY SSF51905 27 142 3.52E-34 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 Gene3D G3DSA:3.50.50.60 19 434 1.4E-56 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 Pfam PF01266 FAD dependent oxidoreductase 39 368 3.2E-44 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 358 364 1.8E-24 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 67 79 1.8E-24 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 388 400 1.8E-24 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 112 124 1.8E-24 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 38 50 1.8E-24 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 61 1.8E-24 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 SUPERFAMILY SSF54373 270 364 1.08E-6 T 28-03-2018 AM348_RS06520 3c3d23180a5b472421aba6f4964d0247 559 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 420 533 2.0E-25 T 28-03-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS03190 4c87c4f4216daf2587410205880426ae 545 Pfam PF00884 Sulfatase 238 527 8.8E-51 T 28-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM348_RS03190 4c87c4f4216daf2587410205880426ae 545 SUPERFAMILY SSF53649 239 531 4.58E-18 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS03190 4c87c4f4216daf2587410205880426ae 545 Gene3D G3DSA:3.40.720.10 246 541 2.1E-22 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS03190 4c87c4f4216daf2587410205880426ae 545 Pfam PF08019 Domain of unknown function (DUF1705) 59 209 9.2E-42 T 28-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 AM348_RS10350 0371e33d74bb4b5a640af61febde87e0 123 Hamap MF_00213 Probable hydrogenase nickel incorporation protein HypA [hypA]. 1 114 23.158 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS10350 0371e33d74bb4b5a640af61febde87e0 123 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 114 5.0E-43 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS10350 0371e33d74bb4b5a640af61febde87e0 123 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 28-03-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site AM348_RS10350 0371e33d74bb4b5a640af61febde87e0 123 PIRSF PIRSF004761 1 116 1.2E-36 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS10350 0371e33d74bb4b5a640af61febde87e0 123 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 113 2.8E-30 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.3E-10 T 28-03-2018 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 1.3E-10 T 28-03-2018 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 SUPERFAMILY SSF51905 356 447 6.79E-74 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 SUPERFAMILY SSF51905 4 255 6.79E-74 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 SUPERFAMILY SSF46977 425 525 2.09E-32 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 8 520 2.4E-235 T 28-03-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 4.2E-5 T 28-03-2018 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 4.2E-5 T 28-03-2018 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 Gene3D G3DSA:3.50.50.60 1 438 1.1E-72 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 521 2.7E-14 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 SUPERFAMILY SSF56425 238 353 1.14E-40 T 28-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 Gene3D G3DSA:1.20.58.100 439 540 5.2E-29 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 Pfam PF00890 FAD binding domain 10 392 2.9E-103 T 28-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 PIRSF PIRSF000171 1 261 1.1E-21 T 28-03-2018 AM348_RS11245 bfd2805eb8310e1c656b86cd30664587 540 PIRSF PIRSF000171 339 531 3.4E-14 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF50022 1241 1344 1.07E-28 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF51905 546 705 4.91E-27 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.50.50.60 2 118 2.9E-9 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00397 Sirohaem Fe-binding site signature 1074 1092 2.2E-6 T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00397 Sirohaem Fe-binding site signature 1031 1049 2.2E-6 T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 3.3E-15 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 141 159 3.3E-15 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 222 238 3.3E-15 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 269 3.3E-15 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.40.50.720 525 703 3.6E-31 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF56014 1028 1199 2.75E-47 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 1242 1342 1.1E-32 T 28-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.50.50.60 384 524 1.5E-10 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 1027 1161 3.1E-16 T 28-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.30.413.10 1025 1195 1.2E-37 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF51905 143 295 2.75E-24 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Pfam PF04324 BFD-like [2Fe-2S] binding domain 819 866 3.5E-9 T 28-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 955 1017 3.2E-11 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 403 1195 0.0 T 28-03-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF51905 2 187 2.46E-37 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.90.480.10 771 1024 5.0E-9 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Pfam PF13806 Rieske-like [2Fe-2S] domain 1242 1342 2.4E-29 T 28-03-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.50.50.60 119 242 7.5E-24 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 1074 1090 - T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 166 1.1E-6 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 102 111 1.1E-6 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 223 237 1.1E-6 T 28-03-2018 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 272 2.8E-49 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 403 701 8.5E-48 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:3.50.50.60 243 306 2.2E-7 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF51905 396 586 7.08E-35 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 Gene3D G3DSA:2.102.10.10 1237 1348 2.6E-15 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS15840 d89471ac85c7dda1d3f1ca128e176894 1354 SUPERFAMILY SSF55124 897 1036 8.5E-26 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 SMART SM00829 12 344 3.9E-4 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 SUPERFAMILY SSF50129 10 174 2.59E-50 T 28-03-2018 IPR011032 GroES-like AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 146 9.6E-27 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 180 207 - T 28-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 Pfam PF00107 Zinc-binding dehydrogenase 187 308 1.4E-20 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 28-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 Gene3D G3DSA:3.40.50.20 266 344 1.2E-5 T 28-03-2018 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 Gene3D G3DSA:3.40.50.20 194 265 6.7E-18 T 28-03-2018 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 Gene3D G3DSA:3.90.180.10 6 193 4.8E-54 T 28-03-2018 AM348_RS16705 e787b7e5338bd5a5486f553791eebda2 350 SUPERFAMILY SSF51735 151 314 3.35E-41 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03885 5c7567ba416638b8347b041f99b6da74 147 ProDom PD097062 ZINC RESISTANCE-ASSOCIATED PERIPLASMIC PRECURSOR SIGNAL YJAI SEQUENCING DIRECT DFFA 23 121 2.0E-43 T 28-03-2018 IPR020365 Zinc resistance-associated protein, ZraP GO:0008270|GO:0042597 AM348_RS03885 5c7567ba416638b8347b041f99b6da74 147 Pfam PF13801 Heavy-metal resistance 7 122 4.4E-21 T 28-03-2018 IPR025961 Heavy-metal resistance protein AM348_RS18410 0c59548587dccaed1d7dafb623e50db4 182 Pfam PF13302 Acetyltransferase (GNAT) domain 10 150 3.2E-23 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS18410 0c59548587dccaed1d7dafb623e50db4 182 SUPERFAMILY SSF55729 2 160 8.21E-28 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS18410 0c59548587dccaed1d7dafb623e50db4 182 Gene3D G3DSA:3.40.630.30 1 180 6.5E-14 T 28-03-2018 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 Gene3D G3DSA:3.90.79.10 231 349 1.1E-10 T 28-03-2018 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 Pfam PF00633 Helix-hairpin-helix motif 100 127 3.3E-8 T 28-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 192 208 - T 28-03-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 SMART SM00478 39 190 8.2E-54 T 28-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 SUPERFAMILY SSF55811 220 344 4.06E-26 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 SUPERFAMILY SSF48150 3 225 3.77E-77 T 28-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 28-03-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 Pfam PF14815 NUDIX domain 234 343 6.7E-25 T 28-03-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 Gene3D G3DSA:1.10.1670.10 118 225 4.5E-34 T 28-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 SMART SM00525 191 211 0.003 T 28-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 5 277 5.3E-131 T 28-03-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 Gene3D G3DSA:1.10.340.30 21 117 3.4E-32 T 28-03-2018 AM348_RS09190 57156c26eb5054319f1a363ba48af70b 350 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 169 3.5E-24 T 28-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 Pfam PF03466 LysR substrate binding domain 96 293 1.6E-27 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 SUPERFAMILY SSF46785 5 82 1.47E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 9.0E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 Gene3D G3DSA:3.40.190.10 96 178 1.5E-8 T 28-03-2018 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.1E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.1E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.1E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 Gene3D G3DSA:3.40.190.10 179 266 1.8E-16 T 28-03-2018 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 SUPERFAMILY SSF53850 95 293 5.43E-29 T 28-03-2018 AM348_RS21645 559c2a5733e86dcc614c208e0f0fe0b3 300 Gene3D G3DSA:1.10.10.10 7 88 1.7E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08420 9d7d19a393a4b8d88b6feb808b95f830 433 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 17 411 4.0E-127 T 28-03-2018 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS08420 9d7d19a393a4b8d88b6feb808b95f830 433 Pfam PF07690 Major Facilitator Superfamily 16 287 5.4E-49 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS08420 9d7d19a393a4b8d88b6feb808b95f830 433 Pfam PF07690 Major Facilitator Superfamily 301 425 3.4E-8 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS08420 9d7d19a393a4b8d88b6feb808b95f830 433 Gene3D G3DSA:1.20.1250.20 1 202 7.1E-40 T 28-03-2018 AM348_RS08420 9d7d19a393a4b8d88b6feb808b95f830 433 Gene3D G3DSA:1.20.1250.20 214 422 2.5E-23 T 28-03-2018 AM348_RS08420 9d7d19a393a4b8d88b6feb808b95f830 433 SUPERFAMILY SSF103473 3 412 7.32E-81 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 28-03-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 105 4.0E-45 T 28-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 SUPERFAMILY SSF54211 5 115 1.97E-31 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 Pfam PF00825 Ribonuclease P 6 111 1.3E-32 T 28-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 115 1.5E-37 T 28-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.779 T 28-03-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 AM348_RS05375 4d309e2a577556be1e5827ed9fed1779 119 Gene3D G3DSA:3.30.230.10 1 119 7.2E-32 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS23305 cd97933730fb625dde22c55291f26d4d 172 SUPERFAMILY SSF101307 16 163 1.16E-48 T 28-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AM348_RS23305 cd97933730fb625dde22c55291f26d4d 172 Pfam PF04608 Phosphatidylglycerophosphatase A 23 163 6.5E-52 T 28-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AM348_RS23305 cd97933730fb625dde22c55291f26d4d 172 Gene3D G3DSA:1.10.3760.10 51 168 1.6E-38 T 28-03-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 AM348_RS23305 cd97933730fb625dde22c55291f26d4d 172 PIRSF PIRSF006162 12 170 6.9E-59 T 28-03-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 Gene3D G3DSA:1.10.10.10 1 88 2.9E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 Gene3D G3DSA:3.40.190.10 190 282 6.4E-10 T 28-03-2018 AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 Pfam PF03466 LysR substrate binding domain 115 313 1.5E-14 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 SUPERFAMILY SSF46785 7 87 1.19E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 Gene3D G3DSA:3.40.190.10 95 189 7.0E-6 T 28-03-2018 AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 SUPERFAMILY SSF53850 98 313 1.1E-25 T 28-03-2018 AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 3.5E-12 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05350 bf07b8973e37fabd7054b7e2984ba523 319 Hamap MF_01607 HTH-type transcriptional regulator YidZ [yidZ]. 1 319 75.219 T 28-03-2018 IPR023746 Transcription regulator HTH, YidZ GO:0003700|GO:0006355 AM348_RS03315 1d6f8f942909fa1dd5e61d624bf723bb 113 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 84 9.6E-30 T 28-03-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 AM348_RS03315 1d6f8f942909fa1dd5e61d624bf723bb 113 SMART SM00530 14 70 4.1E-7 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS03315 1d6f8f942909fa1dd5e61d624bf723bb 113 SUPERFAMILY SSF47413 12 88 6.93E-22 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS03315 1d6f8f942909fa1dd5e61d624bf723bb 113 Gene3D G3DSA:1.10.260.40 1 113 3.8E-17 T 28-03-2018 AM348_RS03315 1d6f8f942909fa1dd5e61d624bf723bb 113 Pfam PF01381 Helix-turn-helix 18 69 1.2E-9 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS21795 0a38574320d7769362e5be8cfe6b9c65 244 Pfam PF03746 LamB/YcsF family 3 235 6.0E-94 T 28-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF AM348_RS21795 0a38574320d7769362e5be8cfe6b9c65 244 SUPERFAMILY SSF88713 1 242 4.74E-92 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS21795 0a38574320d7769362e5be8cfe6b9c65 244 Gene3D G3DSA:3.20.20.370 2 244 2.1E-98 T 28-03-2018 AM348_RS21795 0a38574320d7769362e5be8cfe6b9c65 244 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 43.095 T 28-03-2018 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF AM348_RS02170 d45532d1f5653811f62c0e9f6c972a4e 313 Pfam PF05544 Proline racemase 10 311 4.1E-94 T 28-03-2018 IPR008794 Proline racemase family AM348_RS02170 d45532d1f5653811f62c0e9f6c972a4e 313 Gene3D G3DSA:3.10.310.10 147 289 1.2E-44 T 28-03-2018 AM348_RS02170 d45532d1f5653811f62c0e9f6c972a4e 313 Gene3D G3DSA:3.10.310.10 5 146 6.5E-30 T 28-03-2018 AM348_RS02170 d45532d1f5653811f62c0e9f6c972a4e 313 SUPERFAMILY SSF54506 8 311 5.24E-92 T 28-03-2018 AM348_RS02170 d45532d1f5653811f62c0e9f6c972a4e 313 PIRSF PIRSF029792 2 313 1.8E-92 T 28-03-2018 IPR008794 Proline racemase family AM348_RS07870 7e8e62d2e54c85ad9270b5ccf3a9ffbf 426 SUPERFAMILY SSF51338 7 64 8.95E-10 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS07870 7e8e62d2e54c85ad9270b5ccf3a9ffbf 426 Gene3D G3DSA:2.30.40.10 1 65 1.2E-7 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS07870 7e8e62d2e54c85ad9270b5ccf3a9ffbf 426 Gene3D G3DSA:3.20.20.140 66 364 1.4E-46 T 28-03-2018 AM348_RS07870 7e8e62d2e54c85ad9270b5ccf3a9ffbf 426 SUPERFAMILY SSF51556 56 375 2.2E-107 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS07870 7e8e62d2e54c85ad9270b5ccf3a9ffbf 426 Pfam PF07969 Amidohydrolase family 44 404 1.6E-58 T 28-03-2018 IPR013108 Amidohydrolase 3 AM348_RS10765 33727ba554c170066697deada5edf10f 185 Gene3D G3DSA:3.10.560.10 103 181 4.6E-14 T 28-03-2018 AM348_RS10765 33727ba554c170066697deada5edf10f 185 Pfam PF02563 Polysaccharide biosynthesis/export protein 33 107 3.6E-19 T 28-03-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AM348_RS10765 33727ba554c170066697deada5edf10f 185 Pfam PF10531 SLBB domain 113 155 1.5E-11 T 28-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10765 33727ba554c170066697deada5edf10f 185 Gene3D G3DSA:3.30.1950.10 41 102 1.1E-15 T 28-03-2018 AM348_RS20895 6d43a90aecfb3dba02e3e4da701b074e 286 Gene3D G3DSA:2.60.120.10 1 257 2.7E-82 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS20895 6d43a90aecfb3dba02e3e4da701b074e 286 PIRSF PIRSF006232 3 286 9.1E-91 T 28-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM348_RS20895 6d43a90aecfb3dba02e3e4da701b074e 286 SUPERFAMILY SSF51182 2 285 1.93E-83 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS20895 6d43a90aecfb3dba02e3e4da701b074e 286 Pfam PF05726 Pirin C-terminal cupin domain 182 284 2.2E-31 T 28-03-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 AM348_RS20895 6d43a90aecfb3dba02e3e4da701b074e 286 Pfam PF02678 Pirin 20 127 1.7E-35 T 28-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 ProSitePatterns PS01008 DnaA protein signature. 425 444 - T 28-03-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Pfam PF00308 Bacterial dnaA protein 133 349 3.9E-99 T 28-03-2018 IPR013317 Chromosomal replication initiator protein DnaA AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 SUPERFAMILY SSF48295 363 466 4.45E-38 T 28-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 466 34.446 T 28-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 465 3.9E-187 T 28-03-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Gene3D G3DSA:1.10.8.60 298 369 7.0E-28 T 28-03-2018 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Pfam PF11638 DnaA N-terminal domain 4 64 2.0E-20 T 28-03-2018 IPR024633 DnaA N-terminal domain AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Gene3D G3DSA:3.40.50.300 129 296 1.7E-21 T 28-03-2018 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 SMART SM00382 164 366 4.3E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 425 444 1.7E-54 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 197 211 1.7E-54 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 263 290 1.7E-54 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 229 243 1.7E-54 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 165 185 1.7E-54 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 SMART SM00760 375 444 6.7E-45 T 28-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Gene3D G3DSA:1.10.1750.10 370 466 2.5E-36 T 28-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 SUPERFAMILY SSF52540 133 343 2.22E-44 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05390 7f4585457b7819c5ea6e5fdcc6906843 467 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 376 444 1.2E-32 T 28-03-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Pfam PF02926 THUMP domain 21 153 1.5E-20 T 28-03-2018 IPR004114 THUMP domain GO:0003723 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 SUPERFAMILY SSF53335 147 217 5.33E-39 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 SUPERFAMILY SSF53335 258 373 5.33E-39 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 PIRSF PIRSF037618 1 702 3.5E-298 T 28-03-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 702 32.773 T 28-03-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Gene3D G3DSA:3.40.50.150 169 391 9.8E-33 T 28-03-2018 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 SMART SM00981 56 154 2.7E-19 T 28-03-2018 IPR004114 THUMP domain GO:0003723 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 473 658 3.5E-20 T 28-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 303 315 3.0E-5 T 28-03-2018 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 193 207 3.0E-5 T 28-03-2018 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 3.9E-64 T 28-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Gene3D G3DSA:3.30.750.80 392 491 1.6E-9 T 28-03-2018 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 Gene3D G3DSA:3.40.50.150 492 702 2.4E-42 T 28-03-2018 AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 SUPERFAMILY SSF53335 396 698 2.25E-70 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20585 e9d465ab82432d65df54ad5b68651224 702 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 28-03-2018 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 PRINTS PR00762 Chloride channel signature 382 401 1.7E-20 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 PRINTS PR00762 Chloride channel signature 329 349 1.7E-20 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 PRINTS PR00762 Chloride channel signature 165 184 1.7E-20 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 PRINTS PR00762 Chloride channel signature 115 134 1.7E-20 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 PRINTS PR00762 Chloride channel signature 364 380 1.7E-20 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 Pfam PF00654 Voltage gated chloride channel 77 414 9.7E-73 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 Gene3D G3DSA:1.10.3080.10 3 428 1.1E-71 T 28-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM348_RS17875 888a6130ff2c7a4506b8d9496aafef58 429 SUPERFAMILY SSF81340 5 425 4.32E-85 T 28-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 Gene3D G3DSA:2.30.40.10 448 520 5.5E-10 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 SUPERFAMILY SSF51556 334 467 4.54E-80 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 SUPERFAMILY SSF51556 55 293 4.54E-80 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 Gene3D G3DSA:3.20.20.140 69 447 7.2E-75 T 28-03-2018 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 Pfam PF07969 Amidohydrolase family 43 250 1.7E-14 T 28-03-2018 IPR013108 Amidohydrolase 3 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 Pfam PF07969 Amidohydrolase family 413 510 9.3E-18 T 28-03-2018 IPR013108 Amidohydrolase 3 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 SUPERFAMILY SSF51338 467 510 5.77E-21 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 SUPERFAMILY SSF51338 2 55 5.77E-21 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS10865 faf5d5144236d9d134c953d42265cd35 530 Gene3D G3DSA:2.30.40.10 1 68 1.2E-19 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 Pfam PF13145 PPIC-type PPIASE domain 248 369 5.9E-23 T 28-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 295 316 - T 28-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 SUPERFAMILY SSF109998 203 240 1.7E-36 T 28-03-2018 IPR027304 Trigger factor/SurA domain AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 SUPERFAMILY SSF109998 39 169 1.7E-36 T 28-03-2018 IPR027304 Trigger factor/SurA domain AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 SUPERFAMILY SSF54534 225 354 3.14E-21 T 28-03-2018 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 Pfam PF13624 SurA N-terminal domain 1 165 2.7E-53 T 28-03-2018 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 Gene3D G3DSA:3.10.50.40 230 381 3.6E-32 T 28-03-2018 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 Gene3D G3DSA:3.10.50.40 382 496 7.3E-8 T 28-03-2018 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 Gene3D G3DSA:1.10.4030.10 38 170 3.4E-24 T 28-03-2018 AM348_RS23185 b2f1f0bfc8aca849c7b0a0fd1e6846cc 624 Gene3D G3DSA:1.10.4030.10 178 229 0.0016 T 28-03-2018 AM348_RS11040 1d6761fba71eb681bb6c1b66e24c8573 292 Gene3D G3DSA:3.40.50.10330 1 141 1.3E-39 T 28-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 AM348_RS11040 1d6761fba71eb681bb6c1b66e24c8573 292 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.052 T 28-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AM348_RS11040 1d6761fba71eb681bb6c1b66e24c8573 292 Gene3D G3DSA:2.60.200.30 142 264 2.8E-40 T 28-03-2018 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AM348_RS11040 1d6761fba71eb681bb6c1b66e24c8573 292 Pfam PF01513 ATP-NAD kinase 8 271 1.3E-79 T 28-03-2018 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 AM348_RS11040 1d6761fba71eb681bb6c1b66e24c8573 292 SUPERFAMILY SSF111331 7 289 4.32E-92 T 28-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain AM348_RS08905 b9df796b4568c157212f9d877259f392 275 SUPERFAMILY SSF51430 5 268 6.29E-90 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS08905 b9df796b4568c157212f9d877259f392 275 PRINTS PR00069 Aldo-keto reductase signature 157 186 1.8E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.8E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 PRINTS PR00069 Aldo-keto reductase signature 123 140 1.8E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 PRINTS PR00069 Aldo-keto reductase signature 196 220 1.8E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 PRINTS PR00069 Aldo-keto reductase signature 91 109 1.8E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 PIRSF PIRSF000097 1 269 1.0E-96 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 Pfam PF00248 Aldo/keto reductase family 18 260 8.2E-51 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS08905 b9df796b4568c157212f9d877259f392 275 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS08905 b9df796b4568c157212f9d877259f392 275 Gene3D G3DSA:3.20.20.100 5 270 2.8E-92 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 64 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Pfam PF01568 Molydopterin dinucleotide binding domain 636 745 2.0E-20 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Pfam PF00384 Molybdopterin oxidoreductase 98 522 2.4E-93 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Gene3D G3DSA:3.40.50.740 100 196 1.2E-14 T 28-03-2018 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Gene3D G3DSA:2.20.25.90 36 99 2.0E-12 T 28-03-2018 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Gene3D G3DSA:3.30.2070.10 481 529 1.4E-18 T 28-03-2018 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 30 2.0E-5 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Gene3D G3DSA:2.40.40.20 609 757 5.3E-28 T 28-03-2018 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 SUPERFAMILY SSF53706 44 616 4.97E-138 T 28-03-2018 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 SMART SM00926 41 95 5.7E-7 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 SUPERFAMILY SSF50692 598 747 1.04E-28 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 466 483 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Gene3D G3DSA:3.40.228.10 197 374 3.2E-46 T 28-03-2018 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 94 3.9E-12 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13930 096febb74dedfd1ae9396983d8111415 757 Gene3D G3DSA:3.40.50.740 404 479 2.3E-6 T 28-03-2018 AM348_RS10305 3d6caa08321ca34aa68f199b0043b2f3 271 SUPERFAMILY SSF52540 4 230 4.0E-56 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10305 3d6caa08321ca34aa68f199b0043b2f3 271 SMART SM00382 31 247 3.5E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10305 3d6caa08321ca34aa68f199b0043b2f3 271 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS10305 3d6caa08321ca34aa68f199b0043b2f3 271 Pfam PF00005 ABC transporter 22 169 4.4E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS10305 3d6caa08321ca34aa68f199b0043b2f3 271 Gene3D G3DSA:3.40.50.300 1 239 8.7E-56 T 28-03-2018 AM348_RS19800 ddbca08e5ba9b50b9ac4bcacf54951e6 340 Pfam PF02618 YceG-like family 43 328 2.0E-78 T 28-03-2018 IPR003770 Endolytic murein transglycosylase AM348_RS19800 ddbca08e5ba9b50b9ac4bcacf54951e6 340 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 1 337 3.2E-151 T 28-03-2018 IPR003770 Endolytic murein transglycosylase AM348_RS19800 ddbca08e5ba9b50b9ac4bcacf54951e6 340 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 4 332 32.442 T 28-03-2018 IPR003770 Endolytic murein transglycosylase AM348_RS19800 ddbca08e5ba9b50b9ac4bcacf54951e6 340 Gene3D G3DSA:3.30.160.60 74 108 5.8E-18 T 28-03-2018 AM348_RS19800 ddbca08e5ba9b50b9ac4bcacf54951e6 340 Gene3D G3DSA:3.30.160.60 303 337 2.5E-14 T 28-03-2018 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 Gene3D G3DSA:3.30.420.10 2 159 2.7E-52 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 159 1.6E-86 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 SUPERFAMILY SSF53098 3 156 1.48E-56 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 28-03-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.938 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.3E-44 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.3E-44 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.3E-44 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.3E-44 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.3E-44 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS15130 32c10db2f7a987b59778018a292e5ed4 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.5E-68 T 28-03-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 Pfam PF13437 HlyD family secretion protein 309 411 3.1E-17 T 28-03-2018 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 Gene3D G3DSA:2.40.50.100 62 115 2.1E-4 T 28-03-2018 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 SUPERFAMILY SSF111369 90 150 3.4E-5 T 28-03-2018 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 ProSitePatterns PS00543 HlyD family secretion proteins signature. 421 443 - T 28-03-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 Gene3D G3DSA:1.20.1600.10 125 407 3.8E-21 T 28-03-2018 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 42 457 1.1E-133 T 28-03-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 436 456 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 421 436 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 52 75 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 94 114 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 342 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 378 401 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 354 378 3.8E-45 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10190 4d96a7c7bdac63b42061a3c0c5af8f18 457 Pfam PF13533 Biotin-lipoyl like 91 125 1.7E-6 T 28-03-2018 AM348_RS02540 8083a54aca86efd83b08a70dabfcf5bc 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 2.7E-157 T 28-03-2018 IPR020042 Protein of unknown function DUF4311 AM348_RS02540 8083a54aca86efd83b08a70dabfcf5bc 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 4.1E-123 T 28-03-2018 IPR020042 Protein of unknown function DUF4311 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 Gene3D G3DSA:1.10.260.40 3 62 3.2E-17 T 28-03-2018 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 SMART SM00354 1 73 3.8E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 46 6.8E-15 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 Gene3D G3DSA:3.40.50.2300 167 331 4.6E-29 T 28-03-2018 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 319 1.5E-45 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 SUPERFAMILY SSF53822 63 319 1.26E-41 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 SUPERFAMILY SSF47413 1 59 1.03E-14 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS15695 a0e60c53f9677fdc81e55bcc5b546992 331 Gene3D G3DSA:3.40.50.2300 63 166 9.1E-17 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Gene3D G3DSA:3.40.50.2300 2 100 9.5E-24 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 SMART SM00382 241 404 2.5E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 SUPERFAMILY SSF46689 447 531 1.88E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Pfam PF02954 Bacterial regulatory protein, Fis family 501 531 3.9E-10 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Pfam PF00158 Sigma-54 interaction domain 222 396 4.0E-64 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 11 530 7.8E-247 T 28-03-2018 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0005737|GO:0019629 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 447 456 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Gene3D G3DSA:3.40.50.300 219 415 4.0E-25 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Gene3D G3DSA:1.20.5.170 181 218 1.1E-19 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 316 331 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 SUPERFAMILY SSF159800 15 197 1.83E-50 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Gene3D G3DSA:3.40.50.10660 101 179 4.8E-23 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Gene3D G3DSA:1.10.10.60 499 531 6.3E-10 T 28-03-2018 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 SUPERFAMILY SSF52540 220 464 9.45E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Pfam PF06506 Propionate catabolism activator 39 199 5.3E-48 T 28-03-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 AM348_RS00120 3fea92b8766def156e0b2254afa7d5a3 536 Gene3D G3DSA:1.10.8.60 416 487 1.1E-13 T 28-03-2018 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 233 275 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 Gene3D G3DSA:1.10.10.60 241 292 1.1E-14 T 28-03-2018 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 Gene3D G3DSA:2.60.120.10 8 240 4.0E-27 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 SUPERFAMILY SSF46689 179 230 4.48E-5 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 Pfam PF07883 Cupin domain 29 90 2.1E-12 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 2.7E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 2.7E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 Pfam PF12833 Helix-turn-helix domain 202 281 2.3E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 SUPERFAMILY SSF46689 232 285 3.58E-14 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 SMART SM00342 196 279 3.9E-29 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS18745 2797c46d4d33512b91b2b82d47fe6ee4 296 SUPERFAMILY SSF51182 16 95 2.89E-13 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 1.3E-29 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.3E-29 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.3E-29 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.3E-29 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.3E-29 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 Gene3D G3DSA:3.50.50.60 1 163 1.3E-28 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 3.5E-67 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 PIRSF PIRSF000350 1 447 3.1E-85 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 6.0E-36 T 28-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 1.8E-215 T 28-03-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 318 2.4E-67 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 Gene3D G3DSA:3.40.50.720 164 331 3.9E-34 T 28-03-2018 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 SUPERFAMILY SSF55424 336 450 1.63E-37 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 SUPERFAMILY SSF51905 1 365 3.11E-54 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 Gene3D G3DSA:3.30.390.30 332 450 1.1E-39 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS06430 8493bf001ef4c720919b124562fec910 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 28-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM348_RS21550 8cc28c3add8e9d1378bdd18e1a68298c 418 TIGRFAM TIGR02794 tolA_full: protein TolA 12 232 1.3E-42 T 28-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM348_RS21550 8cc28c3add8e9d1378bdd18e1a68298c 418 TIGRFAM TIGR02794 tolA_full: protein TolA 217 417 6.6E-42 T 28-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM348_RS21550 8cc28c3add8e9d1378bdd18e1a68298c 418 SUPERFAMILY SSF74653 331 418 1.9E-19 T 28-03-2018 AM348_RS21550 8cc28c3add8e9d1378bdd18e1a68298c 418 Pfam PF06519 TolA C-terminal 324 416 9.9E-36 T 28-03-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 AM348_RS21550 8cc28c3add8e9d1378bdd18e1a68298c 418 Gene3D G3DSA:3.30.1150.10 341 413 1.4E-18 T 28-03-2018 AM348_RS21215 33e8ca6bf78ccccf6492c4434af1e691 86 Gene3D G3DSA:3.30.1660.10 22 86 9.3E-21 T 28-03-2018 IPR025543 Dodecin-like AM348_RS21215 33e8ca6bf78ccccf6492c4434af1e691 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 4.3E-16 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS21215 33e8ca6bf78ccccf6492c4434af1e691 86 SUPERFAMILY SSF159871 3 86 1.96E-25 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 SUPERFAMILY SSF54980 365 420 8.63E-14 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 5.4E-10 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 5.4E-10 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 5.4E-10 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 9.0E-30 T 28-03-2018 IPR032305 GTP-binding protein, middle domain AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 PIRSF PIRSF006809 3 420 1.1E-152 T 28-03-2018 IPR016496 GTPase HflX GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.253 T 28-03-2018 IPR016496 GTPase HflX GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 Gene3D G3DSA:3.40.50.300 189 397 8.9E-30 T 28-03-2018 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 SUPERFAMILY SSF52540 197 373 9.33E-41 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 2.1E-155 T 28-03-2018 IPR016496 GTPase HflX GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 Pfam PF01926 50S ribosome-binding GTPase 200 318 3.4E-21 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS02880 c8cea6e6e0345e201560d4a8e3ed3c3b 426 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 2.7E-30 T 28-03-2018 IPR025121 GTPase HflX, N-terminal AM348_RS10130 c0ddd3efc9a42f02957693dd067cceb6 253 SUPERFAMILY SSF64167 1 246 4.45E-83 T 28-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM348_RS10130 c0ddd3efc9a42f02957693dd067cceb6 253 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 3.2E-79 T 28-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM348_RS10130 c0ddd3efc9a42f02957693dd067cceb6 253 Gene3D G3DSA:3.40.1210.10 1 252 1.3E-82 T 28-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM348_RS10130 c0ddd3efc9a42f02957693dd067cceb6 253 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 249 40.177 T 28-03-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM348_RS10130 c0ddd3efc9a42f02957693dd067cceb6 253 Pfam PF01975 Survival protein SurE 3 180 3.3E-57 T 28-03-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 AM348_RS00210 e5f9063a8e98543353bef6600fe0ce81 370 Gene3D G3DSA:3.75.10.10 28 370 3.9E-118 T 28-03-2018 AM348_RS00210 e5f9063a8e98543353bef6600fe0ce81 370 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 42 369 1.0E-105 T 28-03-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 AM348_RS00210 e5f9063a8e98543353bef6600fe0ce81 370 SUPERFAMILY SSF55909 37 370 5.71E-114 T 28-03-2018 AM348_RS19285 3c2eb7204a29a6556fea60be5441d001 120 Pfam PF09313 Domain of unknown function (DUF1971) 12 96 2.1E-24 T 28-03-2018 IPR015392 Domain of unknown function DUF1971 AM348_RS19285 3c2eb7204a29a6556fea60be5441d001 120 SUPERFAMILY SSF51197 1 106 2.75E-34 T 28-03-2018 AM348_RS19285 3c2eb7204a29a6556fea60be5441d001 120 Gene3D G3DSA:2.60.120.10 5 109 3.9E-35 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS19285 3c2eb7204a29a6556fea60be5441d001 120 PIRSF PIRSF020632 1 120 1.4E-50 T 28-03-2018 IPR014510 Tellurite resistance predicted, YeaR AM348_RS12675 884207160b4c6a411662ef4ce7136798 252 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 4 251 33.499 T 28-03-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 AM348_RS12675 884207160b4c6a411662ef4ce7136798 252 Gene3D G3DSA:3.40.50.1820 1 252 1.8E-42 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS12675 884207160b4c6a411662ef4ce7136798 252 Pfam PF12697 Alpha/beta hydrolase family 17 244 2.8E-17 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS12675 884207160b4c6a411662ef4ce7136798 252 SUPERFAMILY SSF53474 11 252 1.01E-38 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS12675 884207160b4c6a411662ef4ce7136798 252 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 15 250 7.0E-78 T 28-03-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 AM348_RS07445 1d39cb39316a9c2998ec292730c96ef2 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 5.9E-22 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07445 1d39cb39316a9c2998ec292730c96ef2 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 3.0E-10 T 28-03-2018 AM348_RS07445 1d39cb39316a9c2998ec292730c96ef2 38 Pfam PF00444 Ribosomal protein L36 1 38 2.3E-20 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07445 1d39cb39316a9c2998ec292730c96ef2 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.829 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07445 1d39cb39316a9c2998ec292730c96ef2 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07445 1d39cb39316a9c2998ec292730c96ef2 38 SUPERFAMILY SSF57840 1 38 5.89E-17 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS04100 1871668514a1f0867e8313ff7baca1bc 211 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 2 210 52.733 T 28-03-2018 IPR023764 Transcriptional repressor HTH, FabR AM348_RS04100 1871668514a1f0867e8313ff7baca1bc 211 Gene3D G3DSA:1.10.10.60 5 38 1.2E-13 T 28-03-2018 AM348_RS04100 1871668514a1f0867e8313ff7baca1bc 211 Gene3D G3DSA:1.10.260.40 39 138 4.0E-11 T 28-03-2018 AM348_RS04100 1871668514a1f0867e8313ff7baca1bc 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 59 3.1E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS04100 1871668514a1f0867e8313ff7baca1bc 211 SUPERFAMILY SSF46689 2 78 5.67E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 Gene3D G3DSA:3.40.140.10 180 294 6.7E-17 T 28-03-2018 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 PIRSF PIRSF006334 14 293 1.1E-104 T 28-03-2018 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 284 5.0E-85 T 28-03-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 292 49.393 T 28-03-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 276 1.1E-43 T 28-03-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 SUPERFAMILY SSF53927 1 148 4.85E-39 T 28-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 60 139 1.0E-10 T 28-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 SUPERFAMILY SSF53927 153 293 1.84E-44 T 28-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 Gene3D G3DSA:3.40.140.10 43 171 1.3E-24 T 28-03-2018 AM348_RS13235 f14bf7a806790afacc78f18f47d20e48 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 28-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AM348_RS03810 a23bbe9d9c481411bb162875c72f2233 593 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 2.8E-244 T 28-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM348_RS03810 a23bbe9d9c481411bb162875c72f2233 593 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 43.363 T 28-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM348_RS03810 a23bbe9d9c481411bb162875c72f2233 593 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 9 573 0.0 T 28-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM348_RS03810 a23bbe9d9c481411bb162875c72f2233 593 PIRSF PIRSF000719 1 575 1.2E-294 T 28-03-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 AM348_RS09515 35a0cffe2f2db94925c2964a23601c7e 577 Gene3D G3DSA:3.90.1640.10 52 245 1.3E-22 T 28-03-2018 AM348_RS09515 35a0cffe2f2db94925c2964a23601c7e 577 Pfam PF01368 DHH family 74 201 2.1E-8 T 28-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS09515 35a0cffe2f2db94925c2964a23601c7e 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 573 3.2E-168 T 28-03-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 AM348_RS09515 35a0cffe2f2db94925c2964a23601c7e 577 Pfam PF02272 DHHA1 domain 322 452 1.5E-26 T 28-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AM348_RS09515 35a0cffe2f2db94925c2964a23601c7e 577 SUPERFAMILY SSF64182 48 465 2.49E-118 T 28-03-2018 AM348_RS02765 276e8a5525881b989744006398afaef5 131 Gene3D G3DSA:3.30.70.60 1 100 2.9E-31 T 28-03-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 AM348_RS02765 276e8a5525881b989744006398afaef5 131 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.652 T 28-03-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS02765 276e8a5525881b989744006398afaef5 131 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 28-03-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS02765 276e8a5525881b989744006398afaef5 131 Pfam PF01250 Ribosomal protein S6 3 91 3.3E-28 T 28-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02765 276e8a5525881b989744006398afaef5 131 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 2.9E-39 T 28-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02765 276e8a5525881b989744006398afaef5 131 SUPERFAMILY SSF54995 1 103 8.63E-38 T 28-03-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS16750 6d33fac2939c0308bb8af11d28de5d5a 369 Gene3D G3DSA:1.10.287.950 169 360 9.4E-42 T 28-03-2018 AM348_RS16750 6d33fac2939c0308bb8af11d28de5d5a 369 Gene3D G3DSA:1.10.287.950 54 168 1.7E-9 T 28-03-2018 AM348_RS16750 6d33fac2939c0308bb8af11d28de5d5a 369 SMART SM00283 109 356 1.1E-63 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS16750 6d33fac2939c0308bb8af11d28de5d5a 369 SUPERFAMILY SSF58104 76 357 4.84E-56 T 28-03-2018 AM348_RS16750 6d33fac2939c0308bb8af11d28de5d5a 369 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 169 324 1.6E-44 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS09005 2d8008a99b0444712aa757d208ae9d2a 162 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 16 153 3.9E-49 T 28-03-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE AM348_RS09005 2d8008a99b0444712aa757d208ae9d2a 162 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 12 154 3.1E-42 T 28-03-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE AM348_RS09005 2d8008a99b0444712aa757d208ae9d2a 162 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 16 146 1.0E-62 T 28-03-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE AM348_RS20115 41dabb0d65de293ff8f5dc379927417d 184 Gene3D G3DSA:1.10.3480.10 1 184 1.1E-36 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS20115 41dabb0d65de293ff8f5dc379927417d 184 SUPERFAMILY SSF89155 2 180 1.03E-43 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS20115 41dabb0d65de293ff8f5dc379927417d 184 PIRSF PIRSF004690 1 184 2.2E-56 T 28-03-2018 IPR026269 Tat proofreading chaperone DmsD-type AM348_RS20115 41dabb0d65de293ff8f5dc379927417d 184 Pfam PF02613 Nitrate reductase delta subunit 35 147 9.9E-14 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS10410 3d23602d3bcc9deb86c8ae6d1eff8630 484 Gene3D G3DSA:3.30.1360.60 6 82 6.5E-28 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS10410 3d23602d3bcc9deb86c8ae6d1eff8630 484 Pfam PF02378 Phosphotransferase system, EIIC 113 396 2.8E-42 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS10410 3d23602d3bcc9deb86c8ae6d1eff8630 484 SUPERFAMILY SSF55604 8 82 3.01E-22 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS10410 3d23602d3bcc9deb86c8ae6d1eff8630 484 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS10410 3d23602d3bcc9deb86c8ae6d1eff8630 484 Pfam PF00367 phosphotransferase system, EIIB 11 43 2.3E-15 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS10410 3d23602d3bcc9deb86c8ae6d1eff8630 484 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 154 441 1.2E-87 T 28-03-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS13700 1f6cde4f1243d37224fcc8b02eeaa10a 280 TIGRFAM TIGR04017 WcaA: colanic acid biosynthesis glycosyltransferase WcaA 2 280 1.1E-182 T 28-03-2018 IPR024009 Colanic acid biosynthesis, glycosyl transferase, WcaA AM348_RS13700 1f6cde4f1243d37224fcc8b02eeaa10a 280 Gene3D G3DSA:3.90.550.10 2 275 1.8E-34 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13700 1f6cde4f1243d37224fcc8b02eeaa10a 280 SUPERFAMILY SSF53448 6 233 1.59E-41 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13700 1f6cde4f1243d37224fcc8b02eeaa10a 280 Pfam PF00535 Glycosyl transferase family 2 9 168 1.6E-27 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS05780 1ce9397f599afcb8f0b727e47ee9f354 401 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 397 1.9E-199 T 28-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AM348_RS05780 1ce9397f599afcb8f0b727e47ee9f354 401 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.851 T 28-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AM348_RS05780 1ce9397f599afcb8f0b727e47ee9f354 401 Pfam PF03616 Sodium/glutamate symporter 3 366 5.0E-162 T 28-03-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 Pfam PF12833 Helix-turn-helix domain 183 262 5.3E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 Gene3D G3DSA:2.60.120.280 21 153 3.1E-11 T 28-03-2018 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 SUPERFAMILY SSF46689 214 264 3.76E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 260 7.9E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 229 244 7.9E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 SMART SM00342 177 260 2.3E-20 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 Pfam PF02311 AraC-like ligand binding domain 26 141 1.9E-5 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 214 256 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 Gene3D G3DSA:1.10.10.60 214 271 2.7E-13 T 28-03-2018 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 Gene3D G3DSA:1.10.10.60 159 213 3.0E-7 T 28-03-2018 AM348_RS06125 2aa6a9fe139c20d132d5693f9c8a6fbd 271 SUPERFAMILY SSF51215 8 142 7.72E-13 T 28-03-2018 AM348_RS13485 e0a5d959043c151b02dd78caf7507a25 171 Pfam PF12883 Protein of unknown function (DUF3828) 40 154 5.1E-25 T 28-03-2018 IPR024289 Domain of unknown function DUF3828 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 SUPERFAMILY SSF56935 22 351 4.97E-80 T 28-03-2018 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00183 E.coli/Salmonella-type porin signature 234 251 1.6E-71 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00183 E.coli/Salmonella-type porin signature 262 281 1.6E-71 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.6E-71 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 1.6E-71 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 1.6E-71 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.6E-71 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 Pfam PF00267 Gram-negative porin 27 351 2.4E-149 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 306 322 - T 28-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 Gene3D G3DSA:2.40.160.10 6 351 4.4E-53 T 28-03-2018 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 228 240 6.3E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 6.3E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 6.3E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 306 323 6.3E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS00410 2873d881fa3d9dc5e0b7da65f020a412 351 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 6.3E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 Gene3D G3DSA:2.60.40.1180 171 220 0.026 T 28-03-2018 AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 SMART SM00671 33 64 4.3 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 SMART SM00671 140 175 6.5E-6 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 SMART SM00671 65 99 170.0 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 SMART SM00671 177 214 0.0019 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 SUPERFAMILY SSF81901 83 214 5.49E-18 T 28-03-2018 AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 Pfam PF08238 Sel1 repeat 46 64 0.052 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 Pfam PF08238 Sel1 repeat 141 171 4.0E-5 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 Pfam PF08238 Sel1 repeat 178 213 2.6E-4 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 Gene3D G3DSA:1.25.40.10 16 152 1.6E-15 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS03380 ad47140753f81a66711a69535d3b530b 227 SUPERFAMILY SSF81901 23 99 6.02E-11 T 28-03-2018 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 PRINTS PR00171 Sugar transporter signature 21 31 3.1E-28 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 PRINTS PR00171 Sugar transporter signature 396 408 3.1E-28 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 PRINTS PR00171 Sugar transporter signature 373 394 3.1E-28 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 PRINTS PR00171 Sugar transporter signature 288 298 3.1E-28 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 PRINTS PR00171 Sugar transporter signature 130 149 3.1E-28 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 Gene3D G3DSA:1.20.1250.20 5 237 5.9E-29 T 28-03-2018 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 Gene3D G3DSA:1.20.1250.20 254 491 3.0E-42 T 28-03-2018 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 SUPERFAMILY SSF103473 6 476 4.19E-63 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 ProSitePatterns PS00216 Sugar transport proteins signature 1. 332 349 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 Pfam PF00083 Sugar (and other) transporter 14 478 7.4E-148 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS03635 d1c93bee73d43662e8cc3aa834154034 491 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 1 474 4.7E-160 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS00715 af99ebb52acdc54d5ab019262501cbf3 151 Gene3D G3DSA:3.10.129.10 1 149 9.5E-56 T 28-03-2018 AM348_RS00715 af99ebb52acdc54d5ab019262501cbf3 151 SUPERFAMILY SSF54637 7 146 9.39E-51 T 28-03-2018 IPR029069 HotDog domain AM348_RS00715 af99ebb52acdc54d5ab019262501cbf3 151 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 3.1E-60 T 28-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS00715 af99ebb52acdc54d5ab019262501cbf3 151 Pfam PF07977 FabA-like domain 17 141 1.9E-40 T 28-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS00715 af99ebb52acdc54d5ab019262501cbf3 151 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.504 T 28-03-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 364 46.265 T 28-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 Gene3D G3DSA:3.40.50.300 1 80 2.6E-8 T 28-03-2018 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 Gene3D G3DSA:3.10.20.30 264 363 9.0E-46 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 Gene3D G3DSA:1.10.150.300 110 201 3.7E-26 T 28-03-2018 IPR023192 TGS-like domain Reactome: R-HSA-114608 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 PIRSF PIRSF006641 1 364 3.6E-158 T 28-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 Pfam PF01926 50S ribosome-binding GTPase 5 122 9.3E-22 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 Pfam PF06071 Protein of unknown function (DUF933) 280 363 1.7E-39 T 28-03-2018 IPR013029 Domain of unknown function DUF933 Reactome: R-HSA-114608 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.4E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.4E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.4E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.4E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 364 1.7E-174 T 28-03-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 SUPERFAMILY SSF81271 280 360 6.76E-36 T 28-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM348_RS15700 668c530bd1f6e384d888a8ae0b304b7e 364 SUPERFAMILY SSF52540 3 302 3.91E-84 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 610 1.8E-237 T 28-03-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 4.3E-11 T 28-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 4.3E-11 T 28-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 417 439 4.3E-11 T 28-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 58 82 4.3E-11 T 28-03-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 9.5E-55 T 28-03-2018 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 Pfam PF00361 Proton-conducting membrane transporter 133 425 1.7E-99 T 28-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12630 5c59e617e0ac0a0acc5be20faaaac313 613 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 7.3E-23 T 28-03-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 SUPERFAMILY SSF50800 74 168 1.29E-24 T 28-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM348_RS15170 814550eba8a48176f3e281255f5548af 480 Gene3D G3DSA:3.40.1380.20 328 480 6.8E-42 T 28-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 5.4E-29 T 28-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 Gene3D G3DSA:3.20.20.60 6 174 5.3E-35 T 28-03-2018 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 Gene3D G3DSA:3.20.20.60 175 327 1.1E-52 T 28-03-2018 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 28-03-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 2.0E-173 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 5.7E-51 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 SUPERFAMILY SSF51621 171 344 1.01E-85 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 SUPERFAMILY SSF51621 4 79 1.01E-85 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 7.5E-131 T 28-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS15170 814550eba8a48176f3e281255f5548af 480 SUPERFAMILY SSF52935 329 479 6.41E-39 T 28-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS06790 72d7f119950d2d1ca64520fac10fafe0 438 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 140 157 - T 28-03-2018 IPR006061 Solute-binding family 1, conserved site GO:0006810 AM348_RS06790 72d7f119950d2d1ca64520fac10fafe0 438 Gene3D G3DSA:3.40.190.10 141 434 1.7E-45 T 28-03-2018 AM348_RS06790 72d7f119950d2d1ca64520fac10fafe0 438 SUPERFAMILY SSF53850 25 425 2.12E-76 T 28-03-2018 AM348_RS06790 72d7f119950d2d1ca64520fac10fafe0 438 Pfam PF13416 Bacterial extracellular solute-binding protein 44 367 3.4E-43 T 28-03-2018 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 Hamap MF_00520 Ribulokinase [araB]. 1 558 59.823 T 28-03-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 Gene3D G3DSA:3.30.420.40 2 278 4.1E-37 T 28-03-2018 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 2 552 4.5E-271 T 28-03-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 Gene3D G3DSA:3.30.420.40 279 550 7.6E-51 T 28-03-2018 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 SUPERFAMILY SSF53067 285 543 8.74E-43 T 28-03-2018 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 SUPERFAMILY SSF53067 5 284 6.74E-21 T 28-03-2018 AM348_RS01365 465ca55bae91c83a3ea2d7d165550ac4 569 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 291 501 7.2E-37 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS23365 748deb1a3c510c50380c9b97ae49252b 110 SMART SM01323 19 102 4.8E-37 T 28-03-2018 IPR003849 Preprotein translocase YajC AM348_RS23365 748deb1a3c510c50380c9b97ae49252b 110 Pfam PF02699 Preprotein translocase subunit 22 99 2.1E-26 T 28-03-2018 IPR003849 Preprotein translocase YajC AM348_RS23365 748deb1a3c510c50380c9b97ae49252b 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 19 102 3.0E-34 T 28-03-2018 IPR003849 Preprotein translocase YajC AM348_RS23365 748deb1a3c510c50380c9b97ae49252b 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 3.1E-17 T 28-03-2018 IPR003849 Preprotein translocase YajC AM348_RS23365 748deb1a3c510c50380c9b97ae49252b 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 3.1E-17 T 28-03-2018 IPR003849 Preprotein translocase YajC AM348_RS02140 5d118f62c5ae2d0655d4c21e1187318e 336 Gene3D G3DSA:1.10.1530.10 4 80 2.6E-21 T 28-03-2018 AM348_RS02140 5d118f62c5ae2d0655d4c21e1187318e 336 Gene3D G3DSA:3.30.1370.60 81 294 9.3E-81 T 28-03-2018 AM348_RS02140 5d118f62c5ae2d0655d4c21e1187318e 336 Gene3D G3DSA:1.10.1530.10 295 325 1.6E-4 T 28-03-2018 AM348_RS02140 5d118f62c5ae2d0655d4c21e1187318e 336 SUPERFAMILY SSF89733 4 334 1.28E-98 T 28-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM348_RS02140 5d118f62c5ae2d0655d4c21e1187318e 336 Pfam PF02615 Malate/L-lactate dehydrogenase 7 331 6.4E-100 T 28-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 156 1.4E-18 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 SUPERFAMILY SSF52540 10 277 1.08E-84 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Gene3D G3DSA:3.30.70.870 394 469 7.9E-11 T 28-03-2018 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 3 529 0.0 T 28-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 SUPERFAMILY SSF54980 393 468 1.76E-17 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Gene3D G3DSA:2.40.30.10 281 387 3.2E-21 T 28-03-2018 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 2.5E-46 T 28-03-2018 IPR032090 Peptide chain release factor 3, C-terminal AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 2.9E-46 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 SUPERFAMILY SSF50447 262 393 1.6E-27 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Gene3D G3DSA:3.40.50.300 8 280 1.3E-36 T 28-03-2018 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 3.4E-10 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS01830 b626c4e7ec247fe784114780989285c0 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.5 T 28-03-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 607 1.3E-75 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 SUPERFAMILY SSF56601 250 611 1.09E-88 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 Gene3D G3DSA:3.90.1310.10 29 245 2.2E-53 T 28-03-2018 AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 233 3.4E-47 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 SUPERFAMILY SSF56519 53 249 2.09E-51 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 15 611 1.8E-226 T 28-03-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0016020 AM348_RS15070 ec8143da27efc02cd8cbaa9433aa7c40 645 Gene3D G3DSA:3.40.710.10 246 616 1.9E-83 T 28-03-2018 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 376 2.5E-26 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 43.206 T 28-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 1.5E-50 T 28-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 4.5E-20 T 28-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 4.5E-20 T 28-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 4.5E-20 T 28-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 4.5E-20 T 28-03-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 Gene3D G3DSA:3.40.50.800 461 572 1.2E-31 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 Pfam PF03129 Anticodon binding domain 475 567 3.1E-21 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 Gene3D G3DSA:3.30.930.10 11 460 3.4E-102 T 28-03-2018 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 SUPERFAMILY SSF52954 462 571 1.33E-33 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 PIRSF PIRSF001535 1 572 7.9E-278 T 28-03-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 568 5.9E-279 T 28-03-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 SUPERFAMILY SSF55681 407 478 1.31E-108 T 28-03-2018 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 SUPERFAMILY SSF55681 10 237 1.31E-108 T 28-03-2018 AM348_RS00645 946747c3bc0cae3eff9298b401bb13dd 572 SUPERFAMILY SSF55826 219 390 3.66E-31 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 28-03-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 Pfam PF00255 Glutathione peroxidase 6 111 1.8E-44 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 PIRSF PIRSF000303 1 183 6.2E-66 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 28-03-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 Gene3D G3DSA:3.40.30.10 3 183 3.0E-44 T 28-03-2018 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 183 52.361 T 28-03-2018 IPR033674 Thioredoxin/glutathione peroxidase BtuE KEGG: 00480+1.11.1.15+1.11.1.9|KEGG: 00590+1.11.1.9|MetaCyc: PWY-4081 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 SUPERFAMILY SSF52833 4 182 2.93E-55 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 PRINTS PR01011 Glutathione peroxidase family signature 143 152 2.3E-19 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.3E-19 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18840 f4b27de0b7b23b075b3fc95fbe92e434 183 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.3E-19 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS11855 90179e43c1edc8eedcce5d8a697ebfdb 97 SUPERFAMILY SSF143414 1 90 1.57E-31 T 28-03-2018 AM348_RS11855 90179e43c1edc8eedcce5d8a697ebfdb 97 SMART SM00877 2 78 2.2E-35 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11855 90179e43c1edc8eedcce5d8a697ebfdb 97 Pfam PF00936 BMC domain 3 78 1.6E-27 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11855 90179e43c1edc8eedcce5d8a697ebfdb 97 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 2 48 6.0E-18 T 28-03-2018 AM348_RS11855 90179e43c1edc8eedcce5d8a697ebfdb 97 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 20 39 - T 28-03-2018 IPR020808 Bacterial microcompartments protein, conserved site AM348_RS15490 78c79c24794fae6a35154e7c949ad760 235 Gene3D G3DSA:2.160.20.70 115 235 1.5E-29 T 28-03-2018 AM348_RS15490 78c79c24794fae6a35154e7c949ad760 235 SUPERFAMILY SSF63848 129 234 3.66E-30 T 28-03-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AM348_RS15490 78c79c24794fae6a35154e7c949ad760 235 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 235 29.34 T 28-03-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AM348_RS15490 78c79c24794fae6a35154e7c949ad760 235 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 234 6.2E-69 T 28-03-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 AM348_RS15490 78c79c24794fae6a35154e7c949ad760 235 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 132 231 4.7E-30 T 28-03-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 AM348_RS15490 78c79c24794fae6a35154e7c949ad760 235 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 103 2.0E-37 T 28-03-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 38.137 T 28-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Gene3D G3DSA:3.30.230.40 255 355 1.2E-31 T 28-03-2018 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 51.396 T 28-03-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 SUPERFAMILY SSF56784 1 158 3.2E-39 T 28-03-2018 IPR023214 HAD-like domain AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 SUPERFAMILY SSF54211 252 342 9.86E-33 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 4.1E-46 T 28-03-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 28-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Pfam PF08645 Polynucleotide kinase 3 phosphatase 8 134 4.7E-5 T 28-03-2018 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 4.3E-82 T 28-03-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 146 3.2E-24 T 28-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 SUPERFAMILY SSF54211 167 251 7.33E-32 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 5.6E-65 T 28-03-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Gene3D G3DSA:3.40.50.1000 1 164 2.0E-24 T 28-03-2018 IPR023214 HAD-like domain AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 28-03-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 AM348_RS13880 2c2c26e1d2ab29d13ce3dfd84a303ac8 355 Gene3D G3DSA:3.30.230.40 165 253 3.8E-34 T 28-03-2018 AM348_RS19585 dffe77cb9308266547081c88ba4df01b 255 SUPERFAMILY SSF52096 2 255 1.71E-84 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS19585 dffe77cb9308266547081c88ba4df01b 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 254 6.5E-72 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS19585 dffe77cb9308266547081c88ba4df01b 255 Gene3D G3DSA:1.10.12.10 213 255 9.2E-21 T 28-03-2018 IPR014748 Crontonase, C-terminal AM348_RS19585 dffe77cb9308266547081c88ba4df01b 255 Gene3D G3DSA:3.90.226.10 3 212 2.7E-68 T 28-03-2018 AM348_RS19585 dffe77cb9308266547081c88ba4df01b 255 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 96 116 - T 28-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 Gene3D G3DSA:3.40.50.2300 56 178 7.3E-24 T 28-03-2018 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 Gene3D G3DSA:3.40.50.2300 179 300 5.8E-39 T 28-03-2018 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 Pfam PF13377 Periplasmic binding protein-like domain 171 331 1.0E-31 T 28-03-2018 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 Gene3D G3DSA:1.10.260.40 2 55 1.9E-23 T 28-03-2018 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 SMART SM00354 1 71 1.3E-36 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 SUPERFAMILY SSF47413 1 59 3.13E-19 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.2E-21 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS10415 2451c3cc3d1116eba4fcf4d1d8979e86 337 SUPERFAMILY SSF53822 60 333 1.85E-67 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 Pfam PF13247 4Fe-4S dicluster domain 85 180 1.1E-21 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 Gene3D G3DSA:3.30.70.20 24 49 0.0045 T 28-03-2018 AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 Gene3D G3DSA:3.30.70.20 50 106 2.1E-13 T 28-03-2018 AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 Gene3D G3DSA:3.30.70.20 107 143 1.7E-18 T 28-03-2018 AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 124 135 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 SUPERFAMILY SSF54862 35 185 4.5E-51 T 28-03-2018 AM348_RS18560 2b9b508dc1cadeb5878633b576be9bab 222 Gene3D G3DSA:3.30.70.20 144 215 1.4E-14 T 28-03-2018 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 SUPERFAMILY SSF159871 3 93 1.7E-21 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 Gene3D G3DSA:3.30.1660.10 247 314 3.6E-22 T 28-03-2018 IPR025543 Dodecin-like AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 SUPERFAMILY SSF159871 108 177 3.01E-16 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 SUPERFAMILY SSF159871 239 314 5.75E-18 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 Pfam PF07338 Protein of unknown function (DUF1471) 34 90 7.4E-18 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 Pfam PF07338 Protein of unknown function (DUF1471) 119 174 2.2E-17 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 Pfam PF07338 Protein of unknown function (DUF1471) 259 314 1.6E-19 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 Gene3D G3DSA:3.30.1660.10 22 90 5.2E-20 T 28-03-2018 IPR025543 Dodecin-like AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 Gene3D G3DSA:3.30.1660.10 108 174 2.4E-16 T 28-03-2018 IPR025543 Dodecin-like AM348_RS17980 cae61dadf49cf583f27d39da4fa6eee9 314 PIRSF PIRSF014774 1 314 9.9E-183 T 28-03-2018 IPR025539 YdgH protein AM348_RS05495 70351c377a75f19f8e24f1b4de5cc34c 394 Gene3D G3DSA:1.20.1250.20 197 390 1.1E-7 T 28-03-2018 AM348_RS05495 70351c377a75f19f8e24f1b4de5cc34c 394 TIGRFAM TIGR00880 2_A_01_02: multidrug resistance protein 51 186 9.2E-40 T 28-03-2018 IPR004734 Multidrug resistance protein GO:0015238|GO:0015893|GO:0016021 Reactome: R-HSA-442660 AM348_RS05495 70351c377a75f19f8e24f1b4de5cc34c 394 Gene3D G3DSA:1.20.1250.20 1 191 1.6E-30 T 28-03-2018 AM348_RS05495 70351c377a75f19f8e24f1b4de5cc34c 394 SUPERFAMILY SSF103473 4 386 2.88E-56 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05495 70351c377a75f19f8e24f1b4de5cc34c 394 Pfam PF07690 Major Facilitator Superfamily 14 349 9.6E-39 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 Pfam PF01175 Urocanase Rossmann-like domain 140 348 7.7E-86 T 28-03-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 Hamap MF_00577 Urocanate hydratase [hutU]. 2 555 49.786 T 28-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 ProSitePatterns PS01233 Urocanase signature. 441 456 - T 28-03-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 SUPERFAMILY SSF111326 6 554 7.98E-260 T 28-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 Pfam PF17391 Urocanase N-terminal domain 11 137 9.3E-62 T 28-03-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 Pfam PF17392 Urocanase C-terminal domain 351 544 1.8E-92 T 28-03-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 PIRSF PIRSF001423 1 560 6.6E-294 T 28-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 Gene3D G3DSA:3.40.1770.10 195 554 2.9E-163 T 28-03-2018 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 Gene3D G3DSA:3.40.1770.10 9 151 4.8E-28 T 28-03-2018 AM348_RS21390 1b02ccfe92d2678941274c766b27c7c4 561 TIGRFAM TIGR01228 hutU: urocanate hydratase 9 553 1.3E-300 T 28-03-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 1.9E-64 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 SUPERFAMILY SSF56784 1 271 1.91E-64 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 5.2E-69 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 28-03-2018 AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 Gene3D G3DSA:3.40.50.1000 1 272 4.5E-40 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 240 3.2E-23 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS21420 4abfe9cab5972d102a820af73c0ad08d 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 28-03-2018 AM348_RS15370 2c26f7b2b37ddb861225d8d42d857e7c 283 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 11 281 1.1E-147 T 28-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM348_RS15370 2c26f7b2b37ddb861225d8d42d857e7c 283 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 12 281 2.3E-112 T 28-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Gene3D G3DSA:3.30.300.20 383 459 1.4E-28 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Pfam PF01926 50S ribosome-binding GTPase 205 322 1.8E-24 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Pfam PF01926 50S ribosome-binding GTPase 5 119 1.4E-28 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Gene3D G3DSA:1.20.120.430 2 66 2.0E-15 T 28-03-2018 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 2.4E-21 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 202 368 1.6E-22 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 SUPERFAMILY SSF52540 137 167 6.46E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 SUPERFAMILY SSF52540 200 464 6.46E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Gene3D G3DSA:1.20.120.430 67 271 3.2E-48 T 28-03-2018 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Gene3D G3DSA:1.20.120.430 272 382 4.4E-17 T 28-03-2018 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Hamap MF_00195 GTPase Der [der]. 2 461 39.666 T 28-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 458 4.7E-180 T 28-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 SUPERFAMILY SSF52540 4 164 2.02E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.1E-10 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.1E-10 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 PIRSF PIRSF006485 1 466 2.2E-180 T 28-03-2018 IPR016484 GTP-binding protein EngA GO:0005525 AM348_RS11610 05cce69ea82381286ed4eefdd11a8cb2 490 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 378 458 3.7E-27 T 28-03-2018 IPR032859 GTPase Der, C-terminal KH-domain-like AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 Pfam PF03471 Transporter associated domain 434 510 5.7E-17 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 Gene3D G3DSA:3.30.465.10 429 511 1.6E-18 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 Gene3D G3DSA:3.10.580.10 281 428 3.1E-23 T 28-03-2018 AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 SUPERFAMILY SSF54631 288 422 2.15E-23 T 28-03-2018 AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 SUPERFAMILY SSF56176 433 518 2.64E-17 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 Pfam PF03741 Integral membrane protein TerC family 14 203 7.6E-49 T 28-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM348_RS15390 157d6bd1ccb3359c56a4f3dfe13e43f3 519 SMART SM01091 431 512 2.3E-21 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 SMART SM00846 3 150 1.7E-95 T 28-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 4.6E-135 T 28-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 2.6E-72 T 28-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 28-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 5.1E-48 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 5.1E-48 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 5.1E-48 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 5.1E-48 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 5.1E-48 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 Gene3D G3DSA:3.40.50.720 1 159 5.9E-79 T 28-03-2018 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 PIRSF PIRSF000149 1 331 1.1E-136 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 SUPERFAMILY SSF51735 3 166 1.98E-67 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 1.7E-41 T 28-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 SUPERFAMILY SSF55347 149 312 4.76E-83 T 28-03-2018 AM348_RS19165 e2831a2d5875a022c4f2b12f155df988 331 Gene3D G3DSA:3.30.360.10 160 314 9.8E-84 T 28-03-2018 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 Gene3D G3DSA:1.20.120.30 48 180 5.6E-23 T 28-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 Gene3D G3DSA:1.10.287.950 314 525 9.0E-41 T 28-03-2018 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 Gene3D G3DSA:1.10.287.950 233 313 0.0082 T 28-03-2018 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 15 40 5.5E-36 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 450 479 5.5E-36 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 296 325 5.5E-36 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 402 431 5.5E-36 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 70 85 5.5E-36 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 400 5.5E-36 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 SUPERFAMILY SSF47170 35 183 4.58E-34 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 SMART SM00283 275 522 3.3E-45 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 SMART SM00304 220 274 9.3E-5 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 SMART SM00319 54 186 7.8E-6 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 483 5.4E-36 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 SUPERFAMILY SSF58104 251 523 8.89E-50 T 28-03-2018 AM348_RS17700 94ac6f58fc20cdf47ca7ac2a30f894ff 525 Pfam PF02203 Tar ligand binding domain homologue 15 176 8.9E-35 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS19055 7bdc5e7309b2021f8823fa78075a7b32 389 Gene3D G3DSA:3.40.190.10 153 330 1.5E-14 T 28-03-2018 AM348_RS19055 7bdc5e7309b2021f8823fa78075a7b32 389 Pfam PF13416 Bacterial extracellular solute-binding protein 59 343 3.6E-20 T 28-03-2018 AM348_RS19055 7bdc5e7309b2021f8823fa78075a7b32 389 Gene3D G3DSA:3.40.190.10 27 138 4.1E-6 T 28-03-2018 AM348_RS19055 7bdc5e7309b2021f8823fa78075a7b32 389 PIRSF PIRSF029172 1 389 5.9E-178 T 28-03-2018 IPR027020 Protein ynjB AM348_RS19055 7bdc5e7309b2021f8823fa78075a7b32 389 SUPERFAMILY SSF53850 33 386 1.04E-33 T 28-03-2018 AM348_RS07115 d65aaa82e4588a6110de3cd66c6d53e0 56 Pfam PF13978 Protein of unknown function (DUF4223) 1 54 1.5E-32 T 28-03-2018 IPR025318 Protein of unknown function DUF4223 AM348_RS20530 7c0e86f9bfcd9840dac7893e019a6e17 204 Pfam PF04994 TfoX C-terminal domain 116 194 2.5E-26 T 28-03-2018 IPR007077 TfoX, C-terminal AM348_RS20530 7c0e86f9bfcd9840dac7893e019a6e17 204 SUPERFAMILY SSF159894 13 107 1.26E-27 T 28-03-2018 AM348_RS20530 7c0e86f9bfcd9840dac7893e019a6e17 204 PIRSF PIRSF028788 1 204 2.2E-54 T 28-03-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type AM348_RS20530 7c0e86f9bfcd9840dac7893e019a6e17 204 Gene3D G3DSA:3.30.1460.30 8 108 5.8E-19 T 28-03-2018 AM348_RS20530 7c0e86f9bfcd9840dac7893e019a6e17 204 Pfam PF04993 TfoX N-terminal domain 14 106 5.6E-25 T 28-03-2018 IPR007076 TfoX, N-terminal AM348_RS20530 7c0e86f9bfcd9840dac7893e019a6e17 204 Gene3D G3DSA:1.10.150.20 117 195 1.9E-17 T 28-03-2018 AM348_RS15280 6c3f359ad18257822fb2b4f7711abc51 427 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 17 417 7.8E-195 T 28-03-2018 IPR005219 Conserved hypothetical protein CHP00155 AM348_RS15280 6c3f359ad18257822fb2b4f7711abc51 427 Pfam PF04403 Paraquat-inducible protein A 263 418 4.6E-44 T 28-03-2018 IPR007498 Paraquat-inducible protein A AM348_RS15280 6c3f359ad18257822fb2b4f7711abc51 427 Pfam PF04403 Paraquat-inducible protein A 66 217 1.0E-36 T 28-03-2018 IPR007498 Paraquat-inducible protein A AM348_RS15280 6c3f359ad18257822fb2b4f7711abc51 427 Gene3D G3DSA:1.20.1070.10 75 406 5.7E-4 T 28-03-2018 AM348_RS12910 925044743279d782561f65677f83f553 149 PIRSF PIRSF006105 1 149 1.9E-54 T 28-03-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB AM348_RS12910 925044743279d782561f65677f83f553 149 SUPERFAMILY SSF48695 48 145 4.84E-41 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS12910 925044743279d782561f65677f83f553 149 Gene3D G3DSA:1.10.1130.10 62 128 2.2E-29 T 28-03-2018 AM348_RS12910 925044743279d782561f65677f83f553 149 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 39 142 6.1E-45 T 28-03-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB AM348_RS05465 781b842054e1e4ef9504ad64b2050e4b 120 Pfam PF02656 Domain of unknown function (DUF202) 12 70 2.2E-10 T 28-03-2018 IPR003807 Domain of unknown function DUF202 AM348_RS05465 781b842054e1e4ef9504ad64b2050e4b 120 ProDom PD277113 MEMBRANE INNER YIDG TRANSMEMBRANE STY3975 RV2273/MT2334 MB2296 12 71 5.0E-21 T 28-03-2018 IPR020264 Uncharacterised protein family YidG AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 SUPERFAMILY SSF52283 7 138 5.74E-50 T 28-03-2018 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 4.2E-51 T 28-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 Gene3D G3DSA:3.40.50.720 137 295 8.4E-42 T 28-03-2018 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 Gene3D G3DSA:3.40.50.720 1 136 5.2E-43 T 28-03-2018 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 3.4E-38 T 28-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 SUPERFAMILY SSF55021 328 409 8.78E-20 T 28-03-2018 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 Pfam PF01842 ACT domain 345 401 7.9E-7 T 28-03-2018 IPR002912 ACT domain AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 Gene3D G3DSA:3.30.70.260 328 409 3.0E-17 T 28-03-2018 AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 SUPERFAMILY SSF51735 108 295 2.06E-58 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS09390 72f7fba3c6334a993524a52265cd54d5 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 28-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 4 329 1.7E-129 T 28-03-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 273 286 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 324 631 6.3E-146 T 28-03-2018 IPR018659 Protein of unknown function DUF2090 AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 Gene3D G3DSA:3.40.1190.20 5 334 8.9E-64 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 Gene3D G3DSA:3.20.20.70 343 634 6.6E-75 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 Pfam PF00294 pfkB family carbohydrate kinase 6 321 1.6E-46 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS10970 33ffac6c914d61894f47897a34d8e5d8 634 SUPERFAMILY SSF53613 4 328 6.08E-72 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 SMART SM01329 6 355 1.6E-183 T 28-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 SUPERFAMILY SSF53659 2 359 1.04E-117 T 28-03-2018 AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 Gene3D G3DSA:3.40.718.10 213 360 6.7E-56 T 28-03-2018 AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 Gene3D G3DSA:3.40.718.10 1 212 1.7E-66 T 28-03-2018 AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 28-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 355 2.5E-88 T 28-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM348_RS15470 dbb55e11c6b855b23cb6fb431efd7e15 360 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 2 358 8.3E-171 T 28-03-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 AM348_RS09865 aac3601275529c0aaa229a7568ab6f67 366 Gene3D G3DSA:3.40.50.150 176 357 5.4E-22 T 28-03-2018 AM348_RS09865 aac3601275529c0aaa229a7568ab6f67 366 PIRSF PIRSF028774 1 360 1.7E-190 T 28-03-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 AM348_RS09865 aac3601275529c0aaa229a7568ab6f67 366 Gene3D G3DSA:3.30.70.940 3 90 0.0019 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS09865 aac3601275529c0aaa229a7568ab6f67 366 Pfam PF01728 FtsJ-like methyltransferase 186 279 1.9E-8 T 28-03-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AM348_RS09865 aac3601275529c0aaa229a7568ab6f67 366 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 355 86.102 T 28-03-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 AM348_RS09865 aac3601275529c0aaa229a7568ab6f67 366 SUPERFAMILY SSF53335 184 296 9.08E-14 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 5.7E-16 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 Gene3D G3DSA:3.40.50.2300 172 330 4.4E-36 T 28-03-2018 AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 Gene3D G3DSA:1.10.10.60 1 20 0.0012 T 28-03-2018 AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 310 2.7E-21 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 SUPERFAMILY SSF47413 4 63 6.4E-14 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 Gene3D G3DSA:3.40.50.2300 65 171 4.7E-22 T 28-03-2018 AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 SUPERFAMILY SSF53822 63 324 1.99E-52 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 Gene3D G3DSA:1.10.260.40 21 64 1.2E-14 T 28-03-2018 AM348_RS01310 ca02bd7722b34f844b0b9198fd64a098 330 SMART SM00354 5 75 1.7E-24 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 SUPERFAMILY SSF75516 8 169 1.19E-36 T 28-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 ProSitePatterns PS00622 LuxR-type HTH domain signature. 194 221 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 2.8E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 2.8E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 2.8E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 SMART SM00421 177 234 1.0E-18 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 Pfam PF00196 Bacterial regulatory proteins, luxR family 179 234 3.6E-22 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 Gene3D G3DSA:3.30.450.80 1 175 5.8E-43 T 28-03-2018 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 Pfam PF03472 Autoinducer binding domain 22 158 2.0E-34 T 28-03-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 SUPERFAMILY SSF46894 165 240 4.76E-18 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS14525 d0e7fd53a9f391276a73a3f931042e65 240 Gene3D G3DSA:1.10.10.10 176 240 3.8E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16350 7bdea343ef0d13ca275720d270f3a0f1 223 Pfam PF02586 SOS response associated peptidase (SRAP) 1 211 3.2E-47 T 28-03-2018 IPR003738 SOS response associated peptidase (SRAP) AM348_RS16350 7bdea343ef0d13ca275720d270f3a0f1 223 Gene3D G3DSA:3.90.1680.10 1 222 6.1E-62 T 28-03-2018 IPR003738 SOS response associated peptidase (SRAP) AM348_RS16350 7bdea343ef0d13ca275720d270f3a0f1 223 SUPERFAMILY SSF143081 2 217 1.57E-59 T 28-03-2018 IPR003738 SOS response associated peptidase (SRAP) AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 628 47.307 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 4.2E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Pfam PF01751 Toprim domain 413 521 1.8E-12 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 SUPERFAMILY SSF56719 388 621 1.57E-77 T 28-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 6.4E-158 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 SMART SM00387 27 173 3.8E-19 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Gene3D G3DSA:3.30.565.10 17 216 4.9E-66 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 SUPERFAMILY SSF55874 5 215 3.44E-69 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Gene3D G3DSA:3.30.230.10 217 391 6.3E-40 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 SMART SM00433 34 624 9.7E-211 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 31 46 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 517 529 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 66 79 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 560 576 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 414 428 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 497 514 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 109 123 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 266 279 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 PRINTS PR00418 DNA topoisomerase II family signature 479 495 1.2E-58 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 SUPERFAMILY SSF54211 217 382 3.22E-47 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Gene3D G3DSA:3.40.50.670 396 627 6.4E-78 T 28-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 625 0.0 T 28-03-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 556 620 2.8E-24 T 28-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 28-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08825 50863d361d18a2f73d0e4a460597eb4f 630 Pfam PF00204 DNA gyrase B 218 384 1.1E-39 T 28-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS07410 8a7bdbbaffd2afbbf2ec380e2e383064 130 Gene3D G3DSA:3.30.1490.10 74 129 3.4E-22 T 28-03-2018 AM348_RS07410 8a7bdbbaffd2afbbf2ec380e2e383064 130 Gene3D G3DSA:3.30.1370.30 1 66 2.5E-25 T 28-03-2018 AM348_RS07410 8a7bdbbaffd2afbbf2ec380e2e383064 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.893 T 28-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07410 8a7bdbbaffd2afbbf2ec380e2e383064 130 Pfam PF00410 Ribosomal protein S8 5 129 5.7E-49 T 28-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07410 8a7bdbbaffd2afbbf2ec380e2e383064 130 SUPERFAMILY SSF56047 5 129 4.97E-46 T 28-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07410 8a7bdbbaffd2afbbf2ec380e2e383064 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 28-03-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.0E-19 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 SUPERFAMILY SSF46785 4 64 2.98E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 Pfam PF00455 DeoR C terminal sensor domain 74 231 1.7E-52 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 SMART SM00420 6 58 7.6E-21 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 SUPERFAMILY SSF100950 73 234 2.0E-36 T 28-03-2018 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 Gene3D G3DSA:3.40.50.1360 72 239 1.7E-38 T 28-03-2018 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 SMART SM01134 72 233 3.8E-72 T 28-03-2018 AM348_RS10455 36d347746ce81a63f83eefce019a3bb9 257 Gene3D G3DSA:1.10.10.10 1 58 1.7E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 354 1.6E-123 T 28-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 Pfam PF01761 3-dehydroquinate synthase 67 325 2.2E-109 T 28-03-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 Gene3D G3DSA:3.40.50.1970 4 172 5.9E-50 T 28-03-2018 AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 358 43.564 T 28-03-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 SUPERFAMILY SSF56796 4 356 1.83E-118 T 28-03-2018 AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 PIRSF PIRSF001455 10 361 1.1E-107 T 28-03-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 AM348_RS07085 462b73268dfc9708949bf1443f75d515 362 Gene3D G3DSA:1.20.1090.10 173 362 1.6E-69 T 28-03-2018 AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 SMART SM00930 259 336 3.0E-26 T 28-03-2018 IPR018449 NIL domain AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 Gene3D G3DSA:3.40.50.300 1 249 1.9E-74 T 28-03-2018 AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 Gene3D G3DSA:3.30.70.260 250 338 4.8E-25 T 28-03-2018 AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 SMART SM00382 31 227 2.8E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 SUPERFAMILY SSF52540 1 241 2.92E-80 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 Pfam PF09383 NIL domain 261 335 5.7E-18 T 28-03-2018 IPR018449 NIL domain AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 SUPERFAMILY SSF55021 249 337 7.78E-19 T 28-03-2018 AM348_RS22795 6639de4b09899d5b4fd515989b3f9849 338 Pfam PF00005 ABC transporter 23 170 1.6E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 SUPERFAMILY SSF56059 481 687 5.11E-27 T 28-03-2018 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Pfam PF00583 Acetyltransferase (GNAT) family 759 863 6.0E-9 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Gene3D G3DSA:3.40.50.720 9 126 3.7E-29 T 28-03-2018 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Gene3D G3DSA:3.40.50.261 127 285 6.8E-40 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Gene3D G3DSA:3.40.630.30 716 886 2.4E-23 T 28-03-2018 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Pfam PF13549 ATP-grasp domain 473 694 4.6E-74 T 28-03-2018 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Pfam PF13380 CoA binding domain 13 129 6.4E-21 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 SUPERFAMILY SSF52210 125 286 1.16E-35 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Gene3D G3DSA:3.30.1490.20 500 561 4.8E-26 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Gene3D G3DSA:3.40.50.261 286 452 4.1E-33 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 SUPERFAMILY SSF51735 2 136 3.18E-32 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 SMART SM00881 9 104 3.4E-22 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 SUPERFAMILY SSF52210 287 447 7.06E-36 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Gene3D G3DSA:3.30.470.20 562 696 3.8E-23 T 28-03-2018 AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 2.0E-46 T 28-03-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain AM348_RS11190 587d048ee68b27bdc640141a3d203109 886 SUPERFAMILY SSF55729 616 866 3.19E-22 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS00295 a81e8e088b309044cb2d957aa831028b 237 Gene3D G3DSA:3.40.630.30 17 208 1.2E-24 T 28-03-2018 AM348_RS00295 a81e8e088b309044cb2d957aa831028b 237 Pfam PF13302 Acetyltransferase (GNAT) domain 42 175 1.3E-12 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS00295 a81e8e088b309044cb2d957aa831028b 237 SUPERFAMILY SSF55729 28 200 2.45E-36 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS20920 d3b0cbb623855b698e406ddd1a0923f5 281 Gene3D G3DSA:1.10.3720.10 11 273 1.2E-40 T 28-03-2018 AM348_RS20920 d3b0cbb623855b698e406ddd1a0923f5 281 SUPERFAMILY SSF161098 8 266 1.57E-49 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS20920 d3b0cbb623855b698e406ddd1a0923f5 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 263 1.3E-13 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19365 082bc869b1fca74cb91cd1e3703b9a57 416 Gene3D G3DSA:3.40.718.10 10 416 3.9E-135 T 28-03-2018 AM348_RS19365 082bc869b1fca74cb91cd1e3703b9a57 416 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 303 322 - T 28-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AM348_RS19365 082bc869b1fca74cb91cd1e3703b9a57 416 SMART SM01329 28 412 8.0E-182 T 28-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM348_RS19365 082bc869b1fca74cb91cd1e3703b9a57 416 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 29 412 3.6E-118 T 28-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM348_RS19365 082bc869b1fca74cb91cd1e3703b9a57 416 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 416 5.8E-241 T 28-03-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 AM348_RS19365 082bc869b1fca74cb91cd1e3703b9a57 416 SUPERFAMILY SSF53659 3 416 7.49E-151 T 28-03-2018 AM348_RS22725 8ebd52cd929a0f0aa8fe8e5e91b7556e 177 Pfam PF00419 Fimbrial protein 31 176 5.3E-13 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS22725 8ebd52cd929a0f0aa8fe8e5e91b7556e 177 Gene3D G3DSA:2.60.40.1090 27 177 7.3E-29 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS22725 8ebd52cd929a0f0aa8fe8e5e91b7556e 177 SUPERFAMILY SSF49401 29 176 8.45E-32 T 28-03-2018 IPR008966 Adhesion domain AM348_RS13090 269c46efb7d8db008c1818f0c12097d2 210 Hamap MF_01150 Chaperone protein TorD [torD]. 2 196 28.317 T 28-03-2018 IPR023069 Chaperone TorD AM348_RS13090 269c46efb7d8db008c1818f0c12097d2 210 Pfam PF02613 Nitrate reductase delta subunit 50 166 3.6E-20 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS13090 269c46efb7d8db008c1818f0c12097d2 210 SUPERFAMILY SSF89155 5 197 9.29E-34 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS13090 269c46efb7d8db008c1818f0c12097d2 210 Gene3D G3DSA:1.10.3480.10 1 204 1.9E-36 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS00795 dede1ef2a27099f65737e7eef8d7e00f 128 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 3.5E-55 T 28-03-2018 IPR020911 Uncharacterised protein family UPF0325 AM348_RS00795 dede1ef2a27099f65737e7eef8d7e00f 128 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.845 T 28-03-2018 IPR020911 Uncharacterised protein family UPF0325 AM348_RS00795 dede1ef2a27099f65737e7eef8d7e00f 128 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 4.0E-67 T 28-03-2018 IPR020911 Uncharacterised protein family UPF0325 AM348_RS04655 266a71285954f9cd1671f2266e80f13c 210 SUPERFAMILY SSF52540 17 199 6.9E-34 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04655 266a71285954f9cd1671f2266e80f13c 210 Gene3D G3DSA:3.40.50.300 5 208 9.6E-28 T 28-03-2018 AM348_RS04655 266a71285954f9cd1671f2266e80f13c 210 Pfam PF01926 50S ribosome-binding GTPase 28 146 2.2E-19 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS04655 266a71285954f9cd1671f2266e80f13c 210 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 14 197 28.22 T 28-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AM348_RS04655 266a71285954f9cd1671f2266e80f13c 210 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 10 193 7.8E-75 T 28-03-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 AM348_RS21190 f42ca2484186a708f8ed1210afd70845 308 PIRSF PIRSF029038 1 308 1.7E-146 T 28-03-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 AM348_RS21190 f42ca2484186a708f8ed1210afd70845 308 Pfam PF05971 Protein of unknown function (DUF890) 3 296 1.4E-149 T 28-03-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 AM348_RS21190 f42ca2484186a708f8ed1210afd70845 308 SUPERFAMILY SSF53335 43 295 2.27E-26 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS21190 f42ca2484186a708f8ed1210afd70845 308 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 5 298 53.033 T 28-03-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 AM348_RS21190 f42ca2484186a708f8ed1210afd70845 308 Gene3D G3DSA:3.40.50.150 38 296 6.7E-51 T 28-03-2018 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 Gene3D G3DSA:3.40.190.10 96 189 8.5E-15 T 28-03-2018 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 Gene3D G3DSA:3.40.190.10 190 272 3.4E-17 T 28-03-2018 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 7.4E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 Pfam PF03466 LysR substrate binding domain 95 300 5.3E-31 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 SUPERFAMILY SSF53850 96 301 3.98E-32 T 28-03-2018 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.9E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.9E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.9E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 SUPERFAMILY SSF46785 9 93 3.09E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13250 4f7e0b5021d1bcac44b6a9826bc5f652 302 Gene3D G3DSA:1.10.10.10 3 90 6.2E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09860 0744a4f7d9866c0bd6ab9f46ded39ba1 131 Pfam PF04241 Protein of unknown function (DUF423) 20 106 7.5E-23 T 28-03-2018 IPR006696 Protein of unknown function DUF423 AM348_RS11710 878a5b004a7dec00dc0576d2e01d2dc8 354 Pfam PF01594 AI-2E family transporter 20 345 1.8E-83 T 28-03-2018 IPR002549 Transmembrane protein TqsA-like AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 713 740 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Pfam PF01568 Molydopterin dinucleotide binding domain 674 785 1.2E-25 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 SUPERFAMILY SSF50692 665 812 1.22E-40 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 497 514 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Pfam PF00384 Molybdopterin oxidoreductase 85 554 1.0E-107 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 42 812 0.0 T 28-03-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Gene3D G3DSA:3.40.228.10 593 657 1.4E-8 T 28-03-2018 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Gene3D G3DSA:3.40.228.10 180 439 1.6E-57 T 28-03-2018 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Gene3D G3DSA:2.40.40.20 658 806 2.0E-31 T 28-03-2018 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 SUPERFAMILY SSF53706 44 666 5.1E-160 T 28-03-2018 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Gene3D G3DSA:3.90.55.10 36 122 3.8E-14 T 28-03-2018 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 Gene3D G3DSA:3.90.55.10 516 592 8.8E-21 T 28-03-2018 AM348_RS22635 c1a848381378fb0564aad7bb8cb6ef7b 814 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 31 9.7E-7 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 PIRSF PIRSF000379 12 764 0.0 T 28-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 Pfam PF02901 Pyruvate formate lyase-like 26 618 3.5E-196 T 28-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 15 764 0.0 T 28-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 ProSitePatterns PS00850 Glycine radical domain signature. 734 742 - T 28-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 Pfam PF01228 Glycine radical 634 745 1.4E-41 T 28-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 Gene3D G3DSA:3.20.70.20 6 764 3.8E-283 T 28-03-2018 AM348_RS08325 afd15f82753b3e2f82f7118f05eb51f6 764 SUPERFAMILY SSF51998 8 762 4.58E-282 T 28-03-2018 AM348_RS00995 9ac6adc9b0cbd792b9f5fd33423a3567 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS00995 9ac6adc9b0cbd792b9f5fd33423a3567 308 Gene3D G3DSA:3.40.50.300 1 249 4.2E-63 T 28-03-2018 AM348_RS00995 9ac6adc9b0cbd792b9f5fd33423a3567 308 Pfam PF00005 ABC transporter 21 165 6.1E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS00995 9ac6adc9b0cbd792b9f5fd33423a3567 308 SMART SM00382 30 213 1.4E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS00995 9ac6adc9b0cbd792b9f5fd33423a3567 308 SUPERFAMILY SSF52540 3 232 1.09E-62 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07610 5ae7f99b94330e2098877d73bed977aa 341 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 3.2E-32 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS07610 5ae7f99b94330e2098877d73bed977aa 341 Gene3D G3DSA:3.40.190.10 142 223 4.3E-13 T 28-03-2018 AM348_RS07610 5ae7f99b94330e2098877d73bed977aa 341 SMART SM00062 36 265 5.8E-59 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS07610 5ae7f99b94330e2098877d73bed977aa 341 SUPERFAMILY SSF53850 27 256 4.14E-48 T 28-03-2018 AM348_RS07610 5ae7f99b94330e2098877d73bed977aa 341 Gene3D G3DSA:3.40.190.10 26 141 2.7E-20 T 28-03-2018 AM348_RS07610 5ae7f99b94330e2098877d73bed977aa 341 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 Pfam PF13437 HlyD family secretion protein 236 324 2.2E-14 T 28-03-2018 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 352 367 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 249 270 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 306 329 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 65 85 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 282 306 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 23 46 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 387 2.3E-37 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 ProSitePatterns PS00543 HlyD family secretion proteins signature. 352 374 - T 28-03-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 AM348_RS10995 a740314f5a2e27d81b9d38c62bf9508b 387 Gene3D G3DSA:2.40.50.100 45 273 8.5E-16 T 28-03-2018 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 Gene3D G3DSA:2.10.109.10 76 320 6.6E-57 T 28-03-2018 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 SUPERFAMILY SSF51306 78 323 1.08E-84 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 Pfam PF10502 Signal peptidase, peptidase S26 256 302 3.0E-7 T 28-03-2018 IPR019533 Peptidase S26 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 Pfam PF00717 Peptidase S24-like 86 159 1.5E-20 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 ProSitePatterns PS00761 Signal peptidases I signature 3. 269 282 - T 28-03-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 305 2.1E-42 T 28-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 3.1E-25 T 28-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 3.1E-25 T 28-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 264 283 3.1E-25 T 28-03-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 28-03-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 AM348_RS11280 9c82a99d38f01b5a3b7a2bdb4859c2d3 324 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 28-03-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AM348_RS12525 87e093e0c5e693d583cccfad335cf29e 184 SUPERFAMILY SSF55811 10 166 5.28E-35 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS12525 87e093e0c5e693d583cccfad335cf29e 184 PIRSF PIRSF017340 2 172 1.1E-72 T 28-03-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 AM348_RS12525 87e093e0c5e693d583cccfad335cf29e 184 Pfam PF00293 NUDIX domain 37 155 2.8E-17 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS12525 87e093e0c5e693d583cccfad335cf29e 184 Gene3D G3DSA:3.90.79.10 2 182 4.1E-38 T 28-03-2018 AM348_RS14790 14a3472d4d2b08e61cdf69bb38bed7ce 234 SMART SM00409 154 234 4.6E-5 T 28-03-2018 IPR003599 Immunoglobulin subtype AM348_RS14790 14a3472d4d2b08e61cdf69bb38bed7ce 234 SUPERFAMILY SSF48726 153 233 6.78E-9 T 28-03-2018 IPR007110 Immunoglobulin-like domain AM348_RS14790 14a3472d4d2b08e61cdf69bb38bed7ce 234 Gene3D G3DSA:2.60.40.1180 155 234 2.3E-10 T 28-03-2018 AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 Gene3D G3DSA:3.30.1330.10 1 156 3.7E-23 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 Pfam PF00586 AIR synthase related protein, N-terminal domain 53 152 2.0E-15 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 SUPERFAMILY SSF55326 3 156 1.71E-32 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 4 336 2.4E-139 T 28-03-2018 IPR011854 Hydrogenase expression/formation protein HypE AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 SUPERFAMILY SSF56042 163 331 9.42E-39 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 Gene3D G3DSA:3.90.650.10 161 324 1.2E-32 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 Pfam PF02769 AIR synthase related protein, C-terminal domain 166 313 1.2E-25 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS10330 1efd0cfbcec06ca93605207042922180 336 PIRSF PIRSF005644 1 336 3.2E-121 T 28-03-2018 IPR011854 Hydrogenase expression/formation protein HypE AM348_RS17080 8d275741fb1b1f90ce2c896d935c5ae7 653 Gene3D G3DSA:3.20.20.70 5 174 2.4E-7 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS17080 8d275741fb1b1f90ce2c896d935c5ae7 653 Pfam PF12392 Collagenase 391 505 9.8E-19 T 28-03-2018 IPR020988 Peptidase U32, collagenase AM348_RS17080 8d275741fb1b1f90ce2c896d935c5ae7 653 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS17080 8d275741fb1b1f90ce2c896d935c5ae7 653 Pfam PF01136 Peptidase family U32 79 305 7.9E-72 T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 SMART SM00866 107 243 3.6E-31 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 Gene3D G3DSA:3.40.1410.10 93 247 5.7E-35 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 8.6E-10 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 8.6E-10 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 87 2.6E-16 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 SUPERFAMILY SSF64288 75 246 2.83E-39 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 Pfam PF07702 UTRA domain 108 242 1.1E-34 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 Gene3D G3DSA:1.10.10.10 1 88 3.3E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 SUPERFAMILY SSF46785 18 90 1.4E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13430 b19d340e8943813e08a21f01cd00fb92 248 SMART SM00345 28 87 1.1E-15 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21120 41d985d75ff16e729c1fb92fea4f1514 420 Gene3D G3DSA:2.60.120.330 1 420 6.1E-127 T 28-03-2018 IPR027443 Isopenicillin N synthase-like AM348_RS21120 41d985d75ff16e729c1fb92fea4f1514 420 Pfam PF07350 Protein of unknown function (DUF1479) 16 418 9.0E-143 T 28-03-2018 IPR010856 Protein of unknown function DUF1479 AM348_RS21120 41d985d75ff16e729c1fb92fea4f1514 420 SUPERFAMILY SSF51197 4 419 2.75E-152 T 28-03-2018 AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 Gene3D G3DSA:3.40.50.300 16 335 2.9E-74 T 28-03-2018 AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 SMART SM00382 48 246 1.7E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 312 6.8E-20 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 Pfam PF00005 ABC transporter 40 196 6.1E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 SUPERFAMILY SSF52540 49 317 5.1E-69 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS15990 68f99e5b28894da3803e196c36b37797 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 248 330 9.6E-25 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS12575 8659660826480639ae632b57c8893976 312 SUPERFAMILY SSF53850 96 292 1.56E-28 T 28-03-2018 AM348_RS12575 8659660826480639ae632b57c8893976 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.4E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12575 8659660826480639ae632b57c8893976 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.4E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12575 8659660826480639ae632b57c8893976 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.4E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12575 8659660826480639ae632b57c8893976 312 Gene3D G3DSA:3.40.190.10 184 262 2.1E-15 T 28-03-2018 AM348_RS12575 8659660826480639ae632b57c8893976 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 7.6E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12575 8659660826480639ae632b57c8893976 312 Gene3D G3DSA:3.40.190.10 94 183 6.2E-14 T 28-03-2018 AM348_RS12575 8659660826480639ae632b57c8893976 312 Gene3D G3DSA:1.10.10.10 9 93 2.0E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12575 8659660826480639ae632b57c8893976 312 Pfam PF03466 LysR substrate binding domain 97 279 6.0E-28 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS12575 8659660826480639ae632b57c8893976 312 SUPERFAMILY SSF46785 11 119 6.47E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15185 818794f6a08545429fd33829b6b45660 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 176 182 - T 28-03-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 186 6.9E-58 T 28-03-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 Gene3D G3DSA:3.30.360.10 188 490 4.1E-126 T 28-03-2018 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 488 3.7E-116 T 28-03-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 SUPERFAMILY SSF51735 4 189 5.12E-56 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS15185 818794f6a08545429fd33829b6b45660 491 SUPERFAMILY SSF55347 176 488 3.6E-113 T 28-03-2018 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 Gene3D G3DSA:3.40.50.720 7 187 5.3E-62 T 28-03-2018 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 7.2E-47 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 7.2E-47 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 7.2E-47 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 7.2E-47 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 7.2E-47 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 PIRSF PIRSF000110 1 491 2.6E-181 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 91.151 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS15185 818794f6a08545429fd33829b6b45660 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 1.5E-205 T 28-03-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 174 192 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 298 315 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 150 173 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 194 215 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 260 279 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 28 51 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 74 96 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 216 237 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 53 73 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 113 138 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 280 298 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 238 259 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 PRINTS PR01002 Flagellar protein FlgJ signature 6 26 4.7E-174 T 28-03-2018 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 298 6.8E-123 T 28-03-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 SMART SM00047 145 309 1.3E-64 T 28-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 165 298 2.2E-19 T 28-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 Pfam PF10135 Rod binding protein 50 97 3.6E-17 T 28-03-2018 IPR019301 Flagellar protein FlgJ, N-terminal AM348_RS19890 feaf97fcf60ee1521719835d717da290 316 Gene3D G3DSA:1.10.530.10 148 302 2.3E-33 T 28-03-2018 AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 12 298 7.6E-109 T 28-03-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 SUPERFAMILY SSF56349 109 294 4.41E-55 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 Pfam PF00589 Phage integrase family 115 282 1.4E-52 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 SUPERFAMILY SSF47823 10 100 1.51E-9 T 28-03-2018 IPR010998 Integrase, Lambda-type, N-terminal AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 11 93 2.6E-23 T 28-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 296 58.251 T 28-03-2018 IPR023009 Tyrosine recombinase XerC/XerD AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 Gene3D G3DSA:1.10.150.130 2 115 1.7E-21 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS04905 ce32247cb0db49dfdd7bb0bde7776a1e 300 Gene3D G3DSA:1.10.443.10 116 290 5.2E-44 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS20130 deaca62cd44a53f2a29846aa7358c951 312 Gene3D G3DSA:3.40.50.720 124 278 2.6E-33 T 28-03-2018 AM348_RS20130 deaca62cd44a53f2a29846aa7358c951 312 Gene3D G3DSA:3.40.50.720 1 123 2.7E-11 T 28-03-2018 AM348_RS20130 deaca62cd44a53f2a29846aa7358c951 312 Hamap MF_01666 Glyoxylate/hydroxypyruvate reductase A [ghrA]. 1 312 64.664 T 28-03-2018 IPR023514 Glyoxylate/hydroxypyruvate reductase A GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 AM348_RS20130 deaca62cd44a53f2a29846aa7358c951 312 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 216 232 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS20130 deaca62cd44a53f2a29846aa7358c951 312 SUPERFAMILY SSF51735 98 278 9.12E-44 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS20130 deaca62cd44a53f2a29846aa7358c951 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 277 1.5E-43 T 28-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 329 37.834 T 28-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 28-03-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 Reactome: R-HSA-947581 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 SMART SM00729 14 222 3.7E-6 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 Gene3D G3DSA:3.20.20.70 1 329 4.4E-71 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 Pfam PF13353 4Fe-4S single cluster domain 23 125 2.1E-6 T 28-03-2018 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 329 4.0E-108 T 28-03-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 Reactome: R-HSA-947581 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 Pfam PF04055 Radical SAM superfamily 19 181 2.1E-28 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 SUPERFAMILY SSF102114 5 289 6.15E-71 T 28-03-2018 AM348_RS21325 099c7800dca4ce11c810352d7b894be0 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 312 9.4E-39 T 28-03-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 Reactome: R-HSA-947581 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 SUPERFAMILY SSF51735 464 636 2.9E-39 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 1.1E-31 T 28-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Gene3D G3DSA:3.40.1160.10 1 288 1.2E-63 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 PIRSF PIRSF000727 1 818 0.0 T 28-03-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 SUPERFAMILY SSF55347 614 798 1.37E-51 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Gene3D G3DSA:3.40.50.720 465 635 8.1E-30 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 SUPERFAMILY SSF55021 303 381 4.75E-23 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 SUPERFAMILY SSF55021 383 476 2.59E-22 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Pfam PF13840 ACT domain 393 453 5.5E-9 T 28-03-2018 IPR027795 GATS-like ACT domain AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Pfam PF01842 ACT domain 324 376 2.6E-9 T 28-03-2018 IPR002912 ACT domain AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 28-03-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Gene3D G3DSA:3.30.70.260 289 383 6.1E-25 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 SUPERFAMILY SSF53633 1 295 5.18E-73 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Pfam PF00742 Homoserine dehydrogenase 614 811 1.6E-47 T 28-03-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 9.1E-151 T 28-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 28-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Pfam PF00696 Amino acid kinase family 2 284 1.1E-45 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Gene3D G3DSA:3.30.70.260 384 464 3.8E-19 T 28-03-2018 AM348_RS01675 43a03c2a499ea12b8e373490954a77a0 820 Gene3D G3DSA:3.30.360.10 636 794 3.4E-53 T 28-03-2018 AM348_RS01335 16431014d55458acdceda087cd0b1e6c 551 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 165 306 2.1E-18 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS01335 16431014d55458acdceda087cd0b1e6c 551 Gene3D G3DSA:3.90.76.10 144 234 1.2E-15 T 28-03-2018 AM348_RS01335 16431014d55458acdceda087cd0b1e6c 551 Gene3D G3DSA:3.40.190.10 235 309 2.0E-11 T 28-03-2018 AM348_RS01335 16431014d55458acdceda087cd0b1e6c 551 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 4.7E-42 T 28-03-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain AM348_RS01335 16431014d55458acdceda087cd0b1e6c 551 Gene3D G3DSA:1.10.10.10 7 89 6.2E-6 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01335 16431014d55458acdceda087cd0b1e6c 551 SUPERFAMILY SSF53850 122 546 1.21E-61 T 28-03-2018 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 Pfam PF08218 Citrate lyase ligase C-terminal domain 147 333 1.2E-80 T 28-03-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 SUPERFAMILY SSF55729 34 116 1.8E-9 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 121 338 9.0E-120 T 28-03-2018 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 Gene3D G3DSA:3.40.630.30 9 125 1.3E-6 T 28-03-2018 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 147 204 6.0E-11 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 SUPERFAMILY SSF52374 144 335 3.08E-24 T 28-03-2018 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 8 339 1.2E-166 T 28-03-2018 IPR005216 Citrate lyase ligase GO:0008771 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 SMART SM00764 147 333 1.9E-132 T 28-03-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 Gene3D G3DSA:3.40.50.620 126 338 2.5E-27 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22190 82e093b3ed974f56755af14f2dac551f 358 PIRSF PIRSF005751 1 351 2.0E-138 T 28-03-2018 IPR005216 Citrate lyase ligase GO:0008771 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Pfam PF01225 Mur ligase family, catalytic domain 26 73 1.3E-9 T 28-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 446 3.9E-142 T 28-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 447 34.384 T 28-03-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Gene3D G3DSA:3.40.1390.10 1 89 2.9E-28 T 28-03-2018 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Pfam PF08245 Mur ligase middle domain 106 292 1.5E-50 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Gene3D G3DSA:3.40.1190.10 90 311 1.7E-57 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 392 4.2E-14 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 SUPERFAMILY SSF63418 1 96 4.97E-28 T 28-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 Gene3D G3DSA:3.90.190.20 312 451 4.0E-39 T 28-03-2018 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 SUPERFAMILY SSF53244 313 446 2.2E-37 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01230 0af05220c47663f730842b9c432462fd 452 SUPERFAMILY SSF53623 100 310 1.83E-59 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 76 1.5E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 Gene3D G3DSA:3.40.190.10 184 277 4.4E-19 T 28-03-2018 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 Gene3D G3DSA:3.40.190.10 101 183 2.3E-16 T 28-03-2018 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 8 308 4.0E-174 T 28-03-2018 IPR011781 D-serine deaminase transcriptional activator AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 SUPERFAMILY SSF53850 99 307 7.24E-32 T 28-03-2018 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 1.8E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 1.8E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 1.8E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 SUPERFAMILY SSF46785 17 123 1.3E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 Pfam PF03466 LysR substrate binding domain 99 307 1.7E-28 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS05485 9ad72e1ba5e57dd4d3389b1130ff3085 308 Gene3D G3DSA:1.10.10.10 5 100 3.0E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20885 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 72 3.1E-35 T 28-03-2018 AM348_RS20885 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 28-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AM348_RS20885 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20885 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 28-03-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 AM348_RS20885 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-27 T 28-03-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 AM348_RS20885 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Gene3D G3DSA:1.20.1640.10 801 1022 3.8E-36 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Gene3D G3DSA:1.20.1640.10 281 503 1.9E-49 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82693 555 650 6.1E-18 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 27.024 T 28-03-2018 IPR023931 Multidrug resistance protein MdtC AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Gene3D G3DSA:3.30.70.1430 40 142 8.9E-26 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82866 811 1010 2.62E-42 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 3.6E-88 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Gene3D G3DSA:3.30.2090.10 181 269 6.7E-14 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82714 183 266 4.97E-16 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82693 788 833 1.23E-5 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82693 663 701 1.23E-5 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82693 40 135 2.96E-23 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82714 703 785 1.05E-15 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Gene3D G3DSA:3.30.2090.10 701 788 2.0E-15 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82866 291 490 1.18E-48 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82693 136 182 8.37E-22 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 SUPERFAMILY SSF82693 268 324 8.37E-22 T 28-03-2018 AM348_RS13630 bd6eec955cba7908f85eeeb05ea36c46 1026 Gene3D G3DSA:3.30.70.1430 557 652 9.6E-14 T 28-03-2018 AM348_RS17985 2bc352dc89137dd48d924e0873e644b5 460 Pfam PF13520 Amino acid permease 5 434 3.1E-78 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS17985 2bc352dc89137dd48d924e0873e644b5 460 PIRSF PIRSF006060 1 459 6.2E-45 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS17985 2bc352dc89137dd48d924e0873e644b5 460 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 459 1.1E-181 T 28-03-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 AM348_RS16395 92415d2956522a768a13a3f53e8ac82d 490 Pfam PF00990 Diguanylate cyclase, GGDEF domain 344 488 2.2E-31 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16395 92415d2956522a768a13a3f53e8ac82d 490 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 343 489 1.7E-33 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16395 92415d2956522a768a13a3f53e8ac82d 490 SUPERFAMILY SSF55073 348 488 4.32E-34 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS16395 92415d2956522a768a13a3f53e8ac82d 490 Gene3D G3DSA:3.30.70.270 340 490 9.7E-37 T 28-03-2018 AM348_RS16395 92415d2956522a768a13a3f53e8ac82d 490 SMART SM00267 333 488 1.9E-30 T 28-03-2018 IPR000160 GGDEF domain AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 217 228 - T 28-03-2018 IPR033116 Serine proteases, trypsin family, serine active site AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 Gene3D G3DSA:2.40.10.10 45 74 1.3E-6 T 28-03-2018 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 Gene3D G3DSA:2.40.10.10 75 178 1.9E-4 T 28-03-2018 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 SUPERFAMILY SSF50494 24 269 1.85E-29 T 28-03-2018 IPR009003 Peptidase S1, PA clan AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 80 85 - T 28-03-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 PRINTS PR00839 V8 serine protease family signature 69 86 8.8E-22 T 28-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 PRINTS PR00839 V8 serine protease family signature 44 61 8.8E-22 T 28-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 PRINTS PR00839 V8 serine protease family signature 212 228 8.8E-22 T 28-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 PRINTS PR00839 V8 serine protease family signature 178 191 8.8E-22 T 28-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 PRINTS PR00839 V8 serine protease family signature 232 244 8.8E-22 T 28-03-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 Gene3D G3DSA:2.40.10.10 179 272 1.2E-11 T 28-03-2018 AM348_RS17935 4a7a1023d06b7eba8f846b275a16e256 273 Pfam PF00089 Trypsin 48 244 8.5E-9 T 28-03-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 AM348_RS04280 50e14e4f971a3e66184049bc9569a0fa 324 Gene3D G3DSA:3.30.70.1070 246 322 5.1E-15 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS04280 50e14e4f971a3e66184049bc9569a0fa 324 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 320 4.1E-95 T 28-03-2018 IPR011930 Cell division protein FtsN GO:0005515 AM348_RS04280 50e14e4f971a3e66184049bc9569a0fa 324 SUPERFAMILY SSF110997 249 319 1.03E-19 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS04280 50e14e4f971a3e66184049bc9569a0fa 324 Hamap MF_02039 Cell division protein FtsN [ftsN]. 36 324 34.294 T 28-03-2018 IPR011930 Cell division protein FtsN GO:0005515 AM348_RS04280 50e14e4f971a3e66184049bc9569a0fa 324 Pfam PF05036 Sporulation related domain 251 318 8.9E-17 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 SUPERFAMILY SSF103473 465 487 4.19E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 SUPERFAMILY SSF103473 3 189 4.19E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 SUPERFAMILY SSF103473 242 413 4.19E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 Gene3D G3DSA:1.20.1250.20 2 192 1.8E-26 T 28-03-2018 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 Pfam PF07690 Major Facilitator Superfamily 12 403 7.1E-41 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 Gene3D G3DSA:1.20.1250.20 246 491 9.6E-22 T 28-03-2018 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 PRINTS PR01036 Tetracycline resistance protein TetB signature 394 413 7.8E-10 T 28-03-2018 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 PRINTS PR01036 Tetracycline resistance protein TetB signature 70 92 7.8E-10 T 28-03-2018 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 PRINTS PR01036 Tetracycline resistance protein TetB signature 132 156 7.8E-10 T 28-03-2018 AM348_RS17350 581d867ce3e7dcb12db0b09443a3f595 494 PRINTS PR01036 Tetracycline resistance protein TetB signature 157 181 7.8E-10 T 28-03-2018 AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 Gene3D G3DSA:3.40.50.620 1 255 4.7E-54 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 SUPERFAMILY SSF52402 1 253 7.67E-60 T 28-03-2018 AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 SMART SM00893 22 215 4.6E-41 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 Pfam PF01012 Electron transfer flavoprotein domain 24 210 1.3E-37 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 PIRSF PIRSF000090 1 255 1.1E-68 T 28-03-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 Hamap MF_01055 Protein FixA [fixA]. 1 256 53.998 T 28-03-2018 IPR023463 Electron transfer flavoprotein, FixA subunit GO:0009055|GO:0009437 AM348_RS01485 23f739f4455f13c449fc14eb7458814c 256 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 159 179 - T 28-03-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AM348_RS21185 e55734ced296265b8f8b0c40f34fbe9f 745 SUPERFAMILY SSF82689 627 722 2.22E-8 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS21185 e55734ced296265b8f8b0c40f34fbe9f 745 SUPERFAMILY SSF50182 558 616 8.5E-10 T 28-03-2018 IPR010920 LSM domain AM348_RS21185 e55734ced296265b8f8b0c40f34fbe9f 745 SUPERFAMILY SSF82861 476 556 2.22E-12 T 28-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM348_RS21185 e55734ced296265b8f8b0c40f34fbe9f 745 Gene3D G3DSA:3.30.70.100 623 720 1.0E-5 T 28-03-2018 AM348_RS21185 e55734ced296265b8f8b0c40f34fbe9f 745 Gene3D G3DSA:2.30.30.60 575 622 5.1E-6 T 28-03-2018 AM348_RS21185 e55734ced296265b8f8b0c40f34fbe9f 745 Pfam PF00924 Mechanosensitive ion channel 515 714 3.5E-43 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 Pfam PF12221 Bacterial membrane protein N terminal 1 59 6.5E-15 T 28-03-2018 IPR020980 Menbrane protein HflK, N-terminal AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 PRINTS PR00721 Stomatin signature 102 124 9.1E-7 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 PRINTS PR00721 Stomatin signature 149 170 9.1E-7 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 PRINTS PR00721 Stomatin signature 184 201 9.1E-7 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 SUPERFAMILY SSF117892 128 259 2.75E-20 T 28-03-2018 IPR001107 Band 7 domain AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 SMART SM00244 95 255 1.3E-42 T 28-03-2018 IPR001107 Band 7 domain AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 TIGRFAM TIGR01933 hflK: HflK protein 97 356 3.7E-125 T 28-03-2018 IPR010201 HflK GO:0016021 AM348_RS02875 62ca1b35554b95d1b2b8df7487e62171 417 Pfam PF01145 SPFH domain / Band 7 family 99 270 1.2E-30 T 28-03-2018 IPR001107 Band 7 domain AM348_RS12540 61e04200c462571c036e0647e4e00026 400 Gene3D G3DSA:3.30.420.40 199 400 3.3E-77 T 28-03-2018 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 28-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PRINTS PR00471 Acetate kinase family signature 380 392 4.1E-48 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PRINTS PR00471 Acetate kinase family signature 6 17 4.1E-48 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PRINTS PR00471 Acetate kinase family signature 325 341 4.1E-48 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PRINTS PR00471 Acetate kinase family signature 302 315 4.1E-48 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PRINTS PR00471 Acetate kinase family signature 176 189 4.1E-48 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PRINTS PR00471 Acetate kinase family signature 206 227 4.1E-48 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 186.212 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 SUPERFAMILY SSF53067 160 398 6.76E-84 T 28-03-2018 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 Pfam PF00871 Acetokinase family 6 393 2.3E-177 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 28-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 Gene3D G3DSA:3.30.420.40 5 198 3.5E-66 T 28-03-2018 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 SUPERFAMILY SSF53067 4 199 3.24E-62 T 28-03-2018 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 3.2E-186 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS12540 61e04200c462571c036e0647e4e00026 400 PIRSF PIRSF000722 2 400 7.8E-143 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 Gene3D G3DSA:3.40.190.10 159 265 1.6E-16 T 28-03-2018 AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 SMART SM00062 42 263 3.5E-87 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 SMART SM00079 42 262 5.6E-5 T 28-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 SUPERFAMILY SSF53850 15 264 2.14E-76 T 28-03-2018 AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 261 1.5E-71 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 Gene3D G3DSA:3.40.190.10 9 158 5.7E-48 T 28-03-2018 AM348_RS14505 3dfa49ceb677bed22508b207f26d44a9 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 Pfam PF03466 LysR substrate binding domain 90 292 1.4E-44 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 Gene3D G3DSA:3.40.190.10 90 181 5.2E-25 T 28-03-2018 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 Gene3D G3DSA:3.40.190.10 182 265 2.5E-19 T 28-03-2018 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 SUPERFAMILY SSF46785 3 113 1.08E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 SUPERFAMILY SSF53850 90 297 7.74E-43 T 28-03-2018 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.7E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.7E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.7E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.3E-20 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12045 457ede533b8916e0f1bf022c01440c3b 308 Gene3D G3DSA:1.10.10.10 1 85 1.8E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02885 98bf30544a913b7417cf3138ef8423e1 102 Gene3D G3DSA:2.30.30.100 4 73 1.1E-33 T 28-03-2018 AM348_RS02885 98bf30544a913b7417cf3138ef8423e1 102 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.396 T 28-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AM348_RS02885 98bf30544a913b7417cf3138ef8423e1 102 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.0E-29 T 28-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AM348_RS02885 98bf30544a913b7417cf3138ef8423e1 102 SUPERFAMILY SSF50182 7 69 4.04E-24 T 28-03-2018 IPR010920 LSM domain AM348_RS02885 98bf30544a913b7417cf3138ef8423e1 102 Pfam PF17209 Hfq protein 7 69 4.9E-31 T 28-03-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Gene3D G3DSA:1.10.1420.10 268 409 8.2E-36 T 28-03-2018 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 SUPERFAMILY SSF55271 6 120 1.83E-43 T 28-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Gene3D G3DSA:1.10.1420.10 410 537 1.1E-30 T 28-03-2018 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Pfam PF05188 MutS domain II 133 258 5.0E-34 T 28-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 SMART SM00533 288 593 2.3E-108 T 28-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 12 852 0.0 T 28-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 SUPERFAMILY SSF52540 569 800 1.2E-61 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Pfam PF05190 MutS family domain IV 430 519 3.6E-28 T 28-03-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 SUPERFAMILY SSF53150 119 271 4.71E-43 T 28-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Pfam PF05192 MutS domain III 274 561 7.0E-40 T 28-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 12 847 25.428 T 28-03-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Gene3D G3DSA:3.40.50.300 569 825 2.8E-42 T 28-03-2018 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Gene3D G3DSA:3.40.1170.10 1 136 5.1E-48 T 28-03-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Pfam PF01624 MutS domain I 13 124 8.1E-43 T 28-03-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 690 706 - T 28-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Gene3D G3DSA:3.30.420.110 137 267 3.3E-27 T 28-03-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 PIRSF PIRSF037677 6 193 8.2E-28 T 28-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 PIRSF PIRSF037677 219 833 2.4E-126 T 28-03-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 SUPERFAMILY SSF48334 272 568 1.57E-89 T 28-03-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 SMART SM00534 609 796 1.0E-123 T 28-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AM348_RS10170 c056803d8115f7d7efa3d65f2d7594b5 855 Pfam PF00488 MutS domain V 612 799 1.6E-88 T 28-03-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 SUPERFAMILY SSF53383 91 468 1.05E-92 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 Pfam PF00155 Aminotransferase class I and II 145 446 1.2E-31 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 SMART SM00345 7 66 8.3E-14 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 Gene3D G3DSA:3.40.640.10 120 369 2.6E-46 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 SUPERFAMILY SSF46785 2 79 2.28E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 5.0E-13 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 Gene3D G3DSA:3.90.1150.10 370 468 7.0E-22 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS17110 30d71d39bb6d8499b0f443d77bcf0774 469 Gene3D G3DSA:1.10.10.10 1 68 3.0E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18810 6036470f79e3044c6ba38761356a2da8 330 Pfam PF01032 FecCD transport family 16 324 4.0E-91 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS18810 6036470f79e3044c6ba38761356a2da8 330 Gene3D G3DSA:1.10.3470.10 1 329 2.6E-70 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS18810 6036470f79e3044c6ba38761356a2da8 330 SUPERFAMILY SSF81345 3 324 8.89E-83 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS15400 9d63e1aea80411acb81425e0b2c53562 454 Gene3D G3DSA:3.30.1330.90 10 158 5.3E-51 T 28-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM348_RS15400 9d63e1aea80411acb81425e0b2c53562 454 SUPERFAMILY SSF143548 16 158 1.33E-45 T 28-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM348_RS15400 9d63e1aea80411acb81425e0b2c53562 454 Gene3D G3DSA:1.10.4100.10 264 444 1.2E-33 T 28-03-2018 AM348_RS15400 9d63e1aea80411acb81425e0b2c53562 454 Pfam PF03313 Serine dehydratase alpha chain 185 448 3.0E-94 T 28-03-2018 IPR005130 Serine dehydratase-like, alpha subunit AM348_RS15400 9d63e1aea80411acb81425e0b2c53562 454 Pfam PF03315 Serine dehydratase beta chain 3 155 2.0E-56 T 28-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM348_RS15400 9d63e1aea80411acb81425e0b2c53562 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.5E-228 T 28-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 SUPERFAMILY SSF48008 86 220 1.39E-25 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 SMART SM00895 88 216 5.2E-20 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 Pfam PF07729 FCD domain 89 215 1.6E-25 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 SMART SM00345 15 74 1.8E-17 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 3.4E-18 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 SUPERFAMILY SSF46785 6 78 3.93E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 Gene3D G3DSA:1.10.10.10 4 82 3.2E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.3E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.3E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06485 66cc8e388760c79494221fbe2f15a6bf 223 Gene3D G3DSA:1.20.120.530 83 222 1.0E-27 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS02870 2b1f91ce5c79d5b588a34f5aefd774ee 334 TIGRFAM TIGR01932 hflC: HflC protein 1 327 2.8E-146 T 28-03-2018 IPR010200 HflC GO:0016021|GO:0052547 AM348_RS02870 2b1f91ce5c79d5b588a34f5aefd774ee 334 PIRSF PIRSF005651 1 334 1.7E-108 T 28-03-2018 IPR010200 HflC GO:0016021|GO:0052547 AM348_RS02870 2b1f91ce5c79d5b588a34f5aefd774ee 334 SMART SM00244 18 227 2.4E-46 T 28-03-2018 IPR001107 Band 7 domain AM348_RS02870 2b1f91ce5c79d5b588a34f5aefd774ee 334 SUPERFAMILY SSF117892 56 157 1.14E-16 T 28-03-2018 IPR001107 Band 7 domain AM348_RS02870 2b1f91ce5c79d5b588a34f5aefd774ee 334 SUPERFAMILY SSF117892 196 233 1.22E-7 T 28-03-2018 IPR001107 Band 7 domain AM348_RS02870 2b1f91ce5c79d5b588a34f5aefd774ee 334 Pfam PF01145 SPFH domain / Band 7 family 22 243 3.2E-34 T 28-03-2018 IPR001107 Band 7 domain AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Pfam PF01966 HD domain 229 328 3.5E-12 T 28-03-2018 IPR006674 HD domain AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.956 T 28-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 46.535 T 28-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Gene3D G3DSA:3.30.460.10 1 118 3.5E-30 T 28-03-2018 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 PIRSF PIRSF000813 1 408 2.4E-205 T 28-03-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 1.6E-13 T 28-03-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 SUPERFAMILY SSF81891 120 402 4.97E-56 T 28-03-2018 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Pfam PF01743 Poly A polymerase head domain 3 122 3.3E-18 T 28-03-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 SUPERFAMILY SSF81301 2 119 1.2E-31 T 28-03-2018 AM348_RS08710 42db64107be9de7d6df84655dced4f29 411 Gene3D G3DSA:1.10.3090.10 119 408 1.4E-59 T 28-03-2018 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 43 508 2.7E-265 T 28-03-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 Gene3D G3DSA:3.40.1080.10 241 484 2.1E-35 T 28-03-2018 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 SUPERFAMILY SSF100950 242 508 3.81E-58 T 28-03-2018 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 PIRSF PIRSF009451 1 510 2.6E-266 T 28-03-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 32 510 9.4E-241 T 28-03-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 SUPERFAMILY SSF100950 32 238 3.84E-73 T 28-03-2018 AM348_RS22205 a914efa701e55393fa9a2f96466e3505 510 Gene3D G3DSA:3.40.1080.10 2 239 2.4E-46 T 28-03-2018 AM348_RS20660 e24f483b98caf4f97361b1800a45b1e0 215 SUPERFAMILY SSF56281 2 209 7.99E-61 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20660 e24f483b98caf4f97361b1800a45b1e0 215 Gene3D G3DSA:3.60.15.10 1 213 1.6E-45 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20660 e24f483b98caf4f97361b1800a45b1e0 215 SMART SM00849 12 192 3.6E-44 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20660 e24f483b98caf4f97361b1800a45b1e0 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 2.7E-32 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00885 5b7755676b0020324f1466686286c485 188 SUPERFAMILY SSF49401 29 187 5.47E-24 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00885 5b7755676b0020324f1466686286c485 188 Gene3D G3DSA:2.60.40.1090 28 188 1.5E-26 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00885 5b7755676b0020324f1466686286c485 188 Pfam PF00419 Fimbrial protein 31 187 1.0E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 Pfam PF13410 Glutathione S-transferase, C-terminal domain 204 257 5.7E-13 T 28-03-2018 AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 Gene3D G3DSA:1.20.1050.10 189 327 1.7E-42 T 28-03-2018 AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 1.7E-22 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 SUPERFAMILY SSF47616 176 324 3.48E-35 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 SUPERFAMILY SSF52833 41 99 2.57E-14 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 SUPERFAMILY SSF52833 126 162 2.57E-14 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 Gene3D G3DSA:3.40.30.10 42 188 1.4E-36 T 28-03-2018 AM348_RS08375 16dc447da1aa0a8bb13a24db46f529e9 328 PIRSF PIRSF015753 5 324 5.0E-135 T 28-03-2018 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 AM348_RS06085 cb1b90753373bcf3ee800169bc006ed5 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS06085 cb1b90753373bcf3ee800169bc006ed5 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS06085 cb1b90753373bcf3ee800169bc006ed5 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 375 5.5E-123 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS06085 cb1b90753373bcf3ee800169bc006ed5 383 SUPERFAMILY SSF56796 5 382 2.36E-132 T 28-03-2018 AM348_RS06085 cb1b90753373bcf3ee800169bc006ed5 383 Gene3D G3DSA:3.40.50.1970 9 183 2.3E-47 T 28-03-2018 AM348_RS06085 cb1b90753373bcf3ee800169bc006ed5 383 Gene3D G3DSA:1.20.1090.10 184 383 2.6E-68 T 28-03-2018 AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 Pfam PF00294 pfkB family carbohydrate kinase 1 285 2.4E-58 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 238 251 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 PRINTS PR00990 Ribokinase signature 6 27 9.4E-7 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 PRINTS PR00990 Ribokinase signature 209 220 9.4E-7 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 PRINTS PR00990 Ribokinase signature 33 52 9.4E-7 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 SUPERFAMILY SSF53613 1 294 1.71E-67 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 Hamap MF_00999 Sulfofructose kinase. 1 298 60.276 T 28-03-2018 IPR030877 Sulfofructose kinase GO:0061594 MetaCyc: PWY-7446 AM348_RS04605 d4c1ead7169d8d34dc8ed7ec476960e2 298 Gene3D G3DSA:3.40.1190.20 1 297 3.1E-67 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Pfam PF08264 Anticodon-binding domain of tRNA 674 824 2.1E-43 T 28-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 949 16.237 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 931 0.0 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Gene3D G3DSA:1.10.730.10 631 816 2.4E-56 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 886 944 3.3E-17 T 28-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 3.0E-232 T 28-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 SUPERFAMILY SSF46589 884 947 2.2E-16 T 28-03-2018 IPR010978 tRNA-binding arm GO:0000166 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 SUPERFAMILY SSF52374 364 571 2.69E-137 T 28-03-2018 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 SUPERFAMILY SSF52374 1 192 2.69E-137 T 28-03-2018 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 SUPERFAMILY SSF52374 609 641 2.69E-137 T 28-03-2018 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 1.4E-35 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 1.4E-35 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 1.4E-35 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 1.4E-35 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 1.4E-35 T 28-03-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Gene3D G3DSA:3.40.50.620 2 630 1.5E-135 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 SUPERFAMILY SSF50677 191 365 3.4E-57 T 28-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 SUPERFAMILY SSF47323 642 899 1.08E-70 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS02390 7583f5ac00974ed1d6f868c8f33b5493 951 Gene3D G3DSA:1.10.287.380 877 946 3.4E-24 T 28-03-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 AM348_RS18665 94be68b46a1a7e98d61f78ed6be6b777 495 Pfam PF01458 Uncharacterized protein family (UPF0051) 234 466 3.1E-69 T 28-03-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AM348_RS18665 94be68b46a1a7e98d61f78ed6be6b777 495 SUPERFAMILY SSF101960 41 86 2.88E-137 T 28-03-2018 AM348_RS18665 94be68b46a1a7e98d61f78ed6be6b777 495 SUPERFAMILY SSF101960 125 492 2.88E-137 T 28-03-2018 AM348_RS18665 94be68b46a1a7e98d61f78ed6be6b777 495 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 486 4.4E-194 T 28-03-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 AM348_RS07210 4acb3929f0c45c2c384935f9faff7c42 72 PIRSF PIRSF006169 1 72 6.4E-38 T 28-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM348_RS07210 4acb3929f0c45c2c384935f9faff7c42 72 Gene3D G3DSA:1.10.10.610 1 71 1.6E-36 T 28-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM348_RS07210 4acb3929f0c45c2c384935f9faff7c42 72 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 25.0 T 28-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM348_RS07210 4acb3929f0c45c2c384935f9faff7c42 72 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 68 1.0E-31 T 28-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM348_RS07210 4acb3929f0c45c2c384935f9faff7c42 72 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 69 8.6E-36 T 28-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM348_RS07210 4acb3929f0c45c2c384935f9faff7c42 72 SUPERFAMILY SSF118001 1 70 1.31E-29 T 28-03-2018 IPR010648 Uncharacterised protein family UPF0270 AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Gene3D G3DSA:3.30.70.1450 215 291 4.5E-10 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 57.968 T 28-03-2018 IPR023017 Transport protein YbjL, putative AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 SUPERFAMILY SSF116726 291 374 4.45E-11 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Pfam PF02080 TrkA-C domain 227 281 6.3E-9 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Pfam PF02080 TrkA-C domain 305 371 2.5E-8 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 SUPERFAMILY SSF116726 227 282 1.27E-10 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 1.1E-37 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 541 1.8E-44 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Pfam PF06826 Predicted Permease Membrane Region 17 182 6.6E-39 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Pfam PF06826 Predicted Permease Membrane Region 385 554 3.0E-42 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS20970 2d512a20576a6ffa13df9a043e7362e4 561 Gene3D G3DSA:3.30.70.1450 295 375 7.4E-9 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 Gene3D G3DSA:1.10.10.60 110 197 0.042 T 28-03-2018 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 SMART SM00342 162 244 2.5E-28 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 198 240 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 Pfam PF12833 Helix-turn-helix domain 169 244 9.2E-14 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 228 244 3.8E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 213 228 3.8E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 SUPERFAMILY SSF46689 197 248 1.36E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03180 ea991680be790cb59ea98f79de75ce63 253 Gene3D G3DSA:1.10.10.60 198 253 7.5E-13 T 28-03-2018 AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 Pfam PF00107 Zinc-binding dehydrogenase 174 300 2.2E-27 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 Gene3D G3DSA:3.90.180.10 1 166 1.7E-44 T 28-03-2018 AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 SUPERFAMILY SSF51735 141 298 3.83E-37 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 Gene3D G3DSA:3.40.50.720 167 285 1.3E-28 T 28-03-2018 AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 SMART SM00829 12 329 0.0012 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 134 5.6E-30 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS06500 ea6b1fffb993477b0f2855b39390604d 341 SUPERFAMILY SSF50129 3 173 6.76E-49 T 28-03-2018 IPR011032 GroES-like AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 SUPERFAMILY SSF46689 223 272 2.46E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 Gene3D G3DSA:1.10.10.60 228 282 2.3E-14 T 28-03-2018 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 SUPERFAMILY SSF46689 170 221 1.08E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 Gene3D G3DSA:1.10.10.60 168 227 1.1E-12 T 28-03-2018 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 Hamap MF_01534 HTH-type transcriptional activator RhaS [rhaS]. 1 273 55.184 T 28-03-2018 IPR023609 Transcription regulator HTH, RhaS GO:0003700|GO:0006355|GO:0019299 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 266 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 Pfam PF12833 Helix-turn-helix domain 193 271 1.7E-25 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 Gene3D G3DSA:2.60.120.280 14 161 7.9E-16 T 28-03-2018 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 Pfam PF02311 AraC-like ligand binding domain 18 154 3.3E-22 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 SMART SM00342 187 270 3.9E-32 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04435 688510118a094b1d77f7d58a56bdb923 282 SUPERFAMILY SSF51215 17 157 1.15E-12 T 28-03-2018 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 2.6E-117 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 5.6E-89 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 PIRSF PIRSF001359 13 359 2.3E-106 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 9.0E-193 T 28-03-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 SUPERFAMILY SSF51569 4 357 7.33E-132 T 28-03-2018 AM348_RS09335 ff3185bbac575077018a3a3e7b2611da 359 Gene3D G3DSA:3.20.20.70 4 358 4.9E-100 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 SUPERFAMILY SSF46689 380 469 7.89E-25 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Gene3D G3DSA:1.10.10.60 383 469 9.0E-27 T 28-03-2018 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Gene3D G3DSA:3.40.50.2300 2 135 2.3E-38 T 28-03-2018 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 8.0E-11 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 8.0E-11 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 SUPERFAMILY SSF52172 6 185 2.28E-48 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 SMART SM00382 160 311 9.1E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Gene3D G3DSA:3.40.50.300 136 312 3.4E-28 T 28-03-2018 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 SMART SM00448 4 115 3.3E-38 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Pfam PF02954 Bacterial regulatory protein, Fis family 427 466 1.7E-15 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 466 2.1E-246 T 28-03-2018 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 SUPERFAMILY SSF52540 139 383 5.79E-74 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Gene3D G3DSA:1.10.8.60 313 382 5.6E-24 T 28-03-2018 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Pfam PF00072 Response regulator receiver domain 6 115 4.6E-31 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS04635 dadedbb1a56fdc1c2ccc3fdb73350cc1 469 Pfam PF00158 Sigma-54 interaction domain 140 306 2.8E-69 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 Gene3D G3DSA:1.20.1380.10 74 176 7.8E-45 T 28-03-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 180 46.375 T 28-03-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 Pfam PF17206 SeqA protein N-terminal domain 1 35 7.0E-24 T 28-03-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 Gene3D G3DSA:1.10.1220.10 1 37 9.9E-26 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 Pfam PF03925 SeqA protein C-terminal domain 70 178 5.6E-51 T 28-03-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 SUPERFAMILY SSF47598 1 35 4.22E-14 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 SUPERFAMILY SSF82808 65 180 1.96E-50 T 28-03-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 AM348_RS21875 5659bab74530cf3cbcfb1c2285c7b3e4 180 PIRSF PIRSF019401 1 180 2.5E-51 T 28-03-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 AM348_RS00475 493e1d75eb61134bdb3e0aaeb20813df 239 Gene3D G3DSA:3.20.20.450 53 238 1.4E-22 T 28-03-2018 IPR001633 EAL domain AM348_RS00475 493e1d75eb61134bdb3e0aaeb20813df 239 SUPERFAMILY SSF141868 64 228 4.18E-22 T 28-03-2018 IPR001633 EAL domain AM348_RS00475 493e1d75eb61134bdb3e0aaeb20813df 239 Pfam PF00563 EAL domain 47 229 7.5E-20 T 28-03-2018 IPR001633 EAL domain AM348_RS00475 493e1d75eb61134bdb3e0aaeb20813df 239 SMART SM00052 12 236 7.8E-4 T 28-03-2018 IPR001633 EAL domain AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00397 Sirohaem Fe-binding site signature 679 697 7.9E-6 T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00397 Sirohaem Fe-binding site signature 636 654 7.9E-6 T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 767 3.5E-15 T 28-03-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 679 695 - T 28-03-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Gene3D G3DSA:3.50.50.60 1 103 9.7E-9 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Gene3D G3DSA:3.50.50.60 248 324 4.2E-9 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Gene3D G3DSA:3.30.413.10 631 816 9.3E-37 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 560 622 1.8E-10 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Gene3D G3DSA:3.50.50.60 104 243 8.3E-29 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 3.8E-11 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 3.8E-11 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 3.8E-11 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.8E-11 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 SUPERFAMILY SSF55124 502 627 2.45E-31 T 28-03-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 SUPERFAMILY SSF56014 633 808 8.9E-47 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Pfam PF04324 BFD-like [2Fe-2S] binding domain 424 471 1.4E-14 T 28-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PIRSF PIRSF037149 1 835 0.0 T 28-03-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 292 2.0E-52 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 5.9E-14 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 5.9E-14 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 5.9E-14 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 5.9E-14 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 Gene3D G3DSA:3.90.480.10 446 629 8.3E-7 T 28-03-2018 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 801 0.0 T 28-03-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 SUPERFAMILY SSF51905 194 320 3.4E-39 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07145 90b2bf5973bb1bb1238c20fa63e78a66 847 SUPERFAMILY SSF51905 1 164 3.4E-39 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21630 ea036ee4c63c2926683b32644d9e4c4a 333 Pfam PF04960 Glutaminase 46 330 3.9E-105 T 28-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM348_RS21630 ea036ee4c63c2926683b32644d9e4c4a 333 TIGRFAM TIGR03814 Gln_ase: glutaminase A 37 330 1.0E-106 T 28-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM348_RS21630 ea036ee4c63c2926683b32644d9e4c4a 333 SUPERFAMILY SSF56601 27 330 5.74E-105 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS21630 ea036ee4c63c2926683b32644d9e4c4a 333 Hamap MF_00313 Glutaminase [glsA]. 28 330 40.49 T 28-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM348_RS21630 ea036ee4c63c2926683b32644d9e4c4a 333 Gene3D G3DSA:3.40.710.10 23 332 6.4E-112 T 28-03-2018 AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 Gene3D G3DSA:3.40.50.720 114 290 3.2E-55 T 28-03-2018 AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 4.9E-28 T 28-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 Gene3D G3DSA:3.40.50.720 1 113 1.5E-25 T 28-03-2018 AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 SUPERFAMILY SSF52283 1 134 2.38E-26 T 28-03-2018 AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 SUPERFAMILY SSF51735 100 288 4.25E-57 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 1 324 72.905 T 28-03-2018 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS06215 58312bdb53f0991752cc3d9c9573259b 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 6.9E-62 T 28-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM348_RS04425 0f0f509b291f80f966405c9be51eefeb 344 Pfam PF06379 L-rhamnose-proton symport protein (RhaT) 1 344 5.4E-219 T 28-03-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 AM348_RS04425 0f0f509b291f80f966405c9be51eefeb 344 Hamap MF_01532 L-rhamnose-proton symporter [rhaT]. 1 344 46.77 T 28-03-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 AM348_RS04425 0f0f509b291f80f966405c9be51eefeb 344 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 7 342 9.9E-112 T 28-03-2018 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 SUPERFAMILY SSF48179 164 293 5.44E-37 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 PIRSF PIRSF000103 1 295 4.7E-95 T 28-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 Gene3D G3DSA:3.40.50.720 3 164 3.9E-36 T 28-03-2018 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 5.5E-38 T 28-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 SUPERFAMILY SSF51735 2 164 5.49E-49 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 294 1.7E-154 T 28-03-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 163 1.6E-51 T 28-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 7 20 - T 28-03-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 Gene3D G3DSA:1.10.1040.10 165 291 1.4E-30 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS08290 1d33fb1eeda4af108ced04c933f613c6 296 Hamap MF_02032 2-hydroxy-3-oxopropionate reductase [garR]. 3 296 62.0 T 28-03-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 AM348_RS21730 315977963df52550d67c5db82aeeea42 115 Gene3D G3DSA:1.20.1300.10 1 115 5.2E-19 T 28-03-2018 AM348_RS21730 315977963df52550d67c5db82aeeea42 115 PIRSF PIRSF000169 1 115 1.8E-43 T 28-03-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AM348_RS21730 315977963df52550d67c5db82aeeea42 115 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 104 7.4E-7 T 28-03-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21730 315977963df52550d67c5db82aeeea42 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 1.6E-37 T 28-03-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 AM348_RS21730 315977963df52550d67c5db82aeeea42 115 SUPERFAMILY SSF81343 5 115 3.11E-31 T 28-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 Gene3D G3DSA:3.90.1150.10 317 430 5.0E-16 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 Pfam PF00155 Aminotransferase class I and II 113 423 8.4E-24 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 SUPERFAMILY SSF53383 72 429 9.76E-60 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 Gene3D G3DSA:1.10.10.10 3 71 1.2E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 69 9.5E-18 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 Gene3D G3DSA:3.40.640.10 107 316 3.3E-26 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 SMART SM00345 10 69 5.9E-19 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 SUPERFAMILY SSF46785 7 73 1.3E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 4.8E-5 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS11985 e90a9ad7fda0be617cb6266a1e6064d8 430 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 4.8E-5 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS00655 5b7d57b30e976facf42d02b87ac429b4 140 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 28-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM348_RS00655 5b7d57b30e976facf42d02b87ac429b4 140 SUPERFAMILY SSF75620 7 113 4.71E-15 T 28-03-2018 AM348_RS00655 5b7d57b30e976facf42d02b87ac429b4 140 Pfam PF00472 RF-1 domain 7 132 8.2E-26 T 28-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM348_RS00655 5b7d57b30e976facf42d02b87ac429b4 140 Gene3D G3DSA:3.30.160.20 1 140 4.5E-41 T 28-03-2018 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 28-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 SUPERFAMILY SSF54975 2 93 7.41E-30 T 28-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 28-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 Pfam PF00708 Acylphosphatase 8 91 1.5E-25 T 28-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 Gene3D G3DSA:3.30.70.100 2 93 2.5E-29 T 28-03-2018 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 PRINTS PR00112 Acylphosphatase signature 26 51 3.7E-8 T 28-03-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 PRINTS PR00112 Acylphosphatase signature 61 81 3.7E-8 T 28-03-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 PRINTS PR00112 Acylphosphatase signature 5 20 3.7E-8 T 28-03-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS20485 a44a2d08bec41cd20b9d68e2928aecc5 93 Hamap MF_01450 Acylphosphatase [yccX]. 2 92 31.088 T 28-03-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 13 241 58.288 T 28-03-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 Gene3D G3DSA:1.10.8.60 175 241 1.7E-14 T 28-03-2018 AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 51 71 1.7E-7 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 139 166 1.7E-7 T 28-03-2018 IPR020591 Chromosomal replication control, initiator DnaA-like AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 SUPERFAMILY SSF52540 26 219 4.15E-22 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 Gene3D G3DSA:3.40.50.300 21 172 2.5E-9 T 28-03-2018 AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 Pfam PF00308 Bacterial dnaA protein 24 220 5.6E-16 T 28-03-2018 IPR013317 Chromosomal replication initiator protein DnaA AM348_RS11695 89545b7c691656b50a67dcf7f2231cdb 241 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 14 240 1.2E-83 T 28-03-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 Pfam PF13375 RnfC Barrel sandwich hybrid domain 387 446 3.9E-13 T 28-03-2018 IPR026902 RnfC Barrel sandwich hybrid domain AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 SUPERFAMILY SSF142019 11 178 2.88E-46 T 28-03-2018 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 SUPERFAMILY SSF142984 172 240 2.09E-12 T 28-03-2018 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 Gene3D G3DSA:3.30.70.20 257 328 3.2E-7 T 28-03-2018 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 Pfam PF13534 4Fe-4S dicluster domain 264 324 1.2E-7 T 28-03-2018 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 SUPERFAMILY SSF46548 214 339 8.02E-12 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 Gene3D G3DSA:3.10.560.10 150 256 2.8E-5 T 28-03-2018 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 PIRSF PIRSF036408 12 450 1.8E-194 T 28-03-2018 IPR017054 Propanediol utilization protein, PduS, predicted AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 21 160 8.1E-40 T 28-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13990 a0eb0710ed06e859e43be916b6d45543 451 Pfam PF10531 SLBB domain 174 219 7.4E-11 T 28-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS02175 22e66f9b4ad2e6b845bf4394c1c56622 367 Gene3D G3DSA:3.40.50.720 3 59 1.2E-6 T 28-03-2018 AM348_RS02175 22e66f9b4ad2e6b845bf4394c1c56622 367 Pfam PF01266 FAD dependent oxidoreductase 5 340 1.1E-54 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS02175 22e66f9b4ad2e6b845bf4394c1c56622 367 SUPERFAMILY SSF54373 203 301 8.5E-14 T 28-03-2018 AM348_RS02175 22e66f9b4ad2e6b845bf4394c1c56622 367 Gene3D G3DSA:3.30.9.10 60 301 2.2E-30 T 28-03-2018 AM348_RS02175 22e66f9b4ad2e6b845bf4394c1c56622 367 SUPERFAMILY SSF51905 303 361 4.4E-42 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02175 22e66f9b4ad2e6b845bf4394c1c56622 367 SUPERFAMILY SSF51905 4 207 4.4E-42 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07910 9ecc06cbaa18c18e63f7735dd399e15e 239 Gene3D G3DSA:1.10.3810.10 46 231 5.2E-57 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS07910 9ecc06cbaa18c18e63f7735dd399e15e 239 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 9 228 2.0E-87 T 28-03-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 AM348_RS07910 9ecc06cbaa18c18e63f7735dd399e15e 239 SUPERFAMILY SSF53955 54 228 5.34E-62 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS07910 9ecc06cbaa18c18e63f7735dd399e15e 239 Pfam PF00912 Transglycosylase 58 224 7.7E-52 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS07910 9ecc06cbaa18c18e63f7735dd399e15e 239 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 5 230 43.531 T 28-03-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 AM348_RS13755 976f144249293201727180292abee008 456 SUPERFAMILY SSF53738 153 261 5.1E-28 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 Gene3D G3DSA:3.40.120.10 160 267 9.6E-32 T 28-03-2018 AM348_RS13755 976f144249293201727180292abee008 456 Gene3D G3DSA:3.30.310.50 370 456 3.9E-12 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 SUPERFAMILY SSF53738 263 368 1.88E-33 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 SUPERFAMILY SSF55957 373 456 2.09E-17 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 SUPERFAMILY SSF53738 3 176 1.06E-38 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 153 258 1.2E-22 T 28-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 2.0E-31 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 2.0E-31 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 2.0E-31 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 2.0E-31 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 371 9.5E-26 T 28-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 28-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 Gene3D G3DSA:3.40.120.10 1 159 3.1E-39 T 28-03-2018 AM348_RS13755 976f144249293201727180292abee008 456 Gene3D G3DSA:3.40.120.10 268 369 3.0E-28 T 28-03-2018 AM348_RS13755 976f144249293201727180292abee008 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 133 1.0E-31 T 28-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS13755 976f144249293201727180292abee008 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 444 1.6E-8 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 Gene3D G3DSA:3.30.360.10 131 328 4.9E-39 T 28-03-2018 AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 SUPERFAMILY SSF55347 124 287 2.45E-32 T 28-03-2018 AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 119 9.7E-21 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 SUPERFAMILY SSF51735 2 143 6.61E-39 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 Gene3D G3DSA:3.40.50.720 1 130 4.7E-32 T 28-03-2018 AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 161 234 8.0E-8 T 28-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS10945 1182d4d842bc4707f0ad71dae38d59b4 328 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 1 326 3.2E-133 T 28-03-2018 IPR030827 Inositol 2-dehydrogenase AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 Gene3D G3DSA:3.40.50.1970 1 159 3.5E-31 T 28-03-2018 AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 PIRSF PIRSF000112 1 360 4.7E-94 T 28-03-2018 AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 SUPERFAMILY SSF56796 2 356 3.66E-90 T 28-03-2018 AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 1.9E-68 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS08545 25b57ed2958c3b5978e4fde14ead6ad9 365 Gene3D G3DSA:1.20.1090.10 160 363 1.4E-43 T 28-03-2018 AM348_RS16570 b77814dd0bd9d5d940fbd03dfa1967c9 330 Pfam PF00005 ABC transporter 24 187 9.1E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS16570 b77814dd0bd9d5d940fbd03dfa1967c9 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 9.7E-17 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS16570 b77814dd0bd9d5d940fbd03dfa1967c9 330 SUPERFAMILY SSF52540 3 264 3.79E-52 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16570 b77814dd0bd9d5d940fbd03dfa1967c9 330 Gene3D G3DSA:3.40.50.300 1 329 7.3E-57 T 28-03-2018 AM348_RS16570 b77814dd0bd9d5d940fbd03dfa1967c9 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 2.5E-20 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS16570 b77814dd0bd9d5d940fbd03dfa1967c9 330 SMART SM00382 32 245 1.1E-6 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 SMART SM00382 365 549 1.7E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 Gene3D G3DSA:1.20.1560.10 1 326 7.6E-31 T 28-03-2018 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 Pfam PF00664 ABC transporter transmembrane region 26 287 1.0E-8 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 Pfam PF00005 ABC transporter 356 502 9.8E-33 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 SUPERFAMILY SSF90123 8 327 4.45E-41 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 Gene3D G3DSA:3.40.50.300 327 572 2.6E-69 T 28-03-2018 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 6 533 5.8E-181 T 28-03-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 AM348_RS20870 9d73e4ade4e2861543b6a6a390807077 573 SUPERFAMILY SSF52540 334 570 6.85E-73 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Pfam PF00171 Aldehyde dehydrogenase family 659 1105 1.8E-111 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 910 921 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 148 259 5.3E-46 T 28-03-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Gene3D G3DSA:3.20.20.220 178 610 6.6E-111 T 28-03-2018 IPR029041 FAD-linked oxidoreductase-like AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 SUPERFAMILY SSF51730 262 618 9.42E-124 T 28-03-2018 IPR029041 FAD-linked oxidoreductase-like AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Gene3D G3DSA:1.20.5.550 89 137 1.5E-17 T 28-03-2018 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Pfam PF01619 Proline dehydrogenase 270 569 4.1E-100 T 28-03-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 PIRSF PIRSF000197 74 1320 0.0 T 28-03-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Gene3D G3DSA:1.10.1220.10 2 49 9.1E-6 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 SUPERFAMILY SSF53720 656 1110 9.82E-124 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 SUPERFAMILY SSF47598 3 45 8.0E-11 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 882 889 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Gene3D G3DSA:3.40.309.10 902 1094 4.8E-45 T 28-03-2018 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 SUPERFAMILY SSF81935 88 261 2.22E-65 T 28-03-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 610 1112 7.8E-263 T 28-03-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 AM348_RS20170 60fe39dd8fc169fc4ebf93ce13b8c978 1320 Gene3D G3DSA:3.40.605.10 650 901 2.7E-71 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS01985 148a540fa5f1dddf077e3e39bbc1d1a3 355 SUPERFAMILY SSF111369 45 164 8.11E-11 T 28-03-2018 AM348_RS01985 148a540fa5f1dddf077e3e39bbc1d1a3 355 Pfam PF13533 Biotin-lipoyl like 45 89 2.4E-11 T 28-03-2018 AM348_RS01985 148a540fa5f1dddf077e3e39bbc1d1a3 355 SUPERFAMILY SSF111369 177 253 1.2E-5 T 28-03-2018 AM348_RS01985 148a540fa5f1dddf077e3e39bbc1d1a3 355 Gene3D G3DSA:1.20.1600.10 49 318 2.2E-21 T 28-03-2018 AM348_RS11885 366a5ac1994f8a86e0426a235ea71062 467 PIRSF PIRSF012293 2 467 5.4E-206 T 28-03-2018 IPR009377 Ethanolamine utilisation EutA AM348_RS11885 366a5ac1994f8a86e0426a235ea71062 467 Gene3D G3DSA:3.30.420.150 127 359 1.3E-8 T 28-03-2018 AM348_RS11885 366a5ac1994f8a86e0426a235ea71062 467 SUPERFAMILY SSF53067 8 266 2.59E-8 T 28-03-2018 AM348_RS11885 366a5ac1994f8a86e0426a235ea71062 467 Pfam PF06277 Ethanolamine utilisation protein EutA 5 465 2.9E-177 T 28-03-2018 IPR009377 Ethanolamine utilisation EutA AM348_RS11885 366a5ac1994f8a86e0426a235ea71062 467 Gene3D G3DSA:3.30.420.40 2 110 0.17 T 28-03-2018 AM348_RS09835 0631f04f5dcc49d5b56ba50f02fde794 268 Pfam PF00899 ThiF family 21 260 1.2E-37 T 28-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM348_RS09835 0631f04f5dcc49d5b56ba50f02fde794 268 SUPERFAMILY SSF69572 10 259 1.83E-64 T 28-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM348_RS09835 0631f04f5dcc49d5b56ba50f02fde794 268 Gene3D G3DSA:3.40.50.720 3 267 4.0E-54 T 28-03-2018 AM348_RS07755 e7f88d653bfd37fa9635f2d965fbf533 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 24.472 T 28-03-2018 IPR012451 Protein of unknown function DUF1656 AM348_RS07755 e7f88d653bfd37fa9635f2d965fbf533 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 4.9E-20 T 28-03-2018 IPR012451 Protein of unknown function DUF1656 AM348_RS22030 ab7932ac3050418110f6892294f2f8ae 155 Gene3D G3DSA:3.40.390.30 1 155 6.2E-55 T 28-03-2018 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 AM348_RS22030 ab7932ac3050418110f6892294f2f8ae 155 SUPERFAMILY SSF55486 3 151 5.86E-50 T 28-03-2018 AM348_RS22030 ab7932ac3050418110f6892294f2f8ae 155 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 1.7E-37 T 28-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AM348_RS22030 ab7932ac3050418110f6892294f2f8ae 155 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 24.84 T 28-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AM348_RS22030 ab7932ac3050418110f6892294f2f8ae 155 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 28-03-2018 IPR020549 Endoribonuclease YbeY, conserved site AM348_RS22030 ab7932ac3050418110f6892294f2f8ae 155 Pfam PF02130 Uncharacterized protein family UPF0054 21 142 1.2E-38 T 28-03-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 Pfam PF01979 Amidohydrolase family 50 379 1.5E-47 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 Gene3D G3DSA:2.30.40.10 2 68 4.7E-10 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 SUPERFAMILY SSF51556 54 350 1.81E-99 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 Gene3D G3DSA:3.20.20.140 69 350 2.5E-90 T 28-03-2018 AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 PIRSF PIRSF038994 1 382 3.3E-112 T 28-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 377 6.9E-177 T 28-03-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 AM348_RS21955 fb4e3f02f8dae8bd2d800810815d97c3 382 SUPERFAMILY SSF51338 1 53 8.33E-18 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 SUPERFAMILY SSF52540 7 234 2.77E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 SMART SM00382 32 222 1.0E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 SMART SM00382 283 478 0.0016 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 SUPERFAMILY SSF52540 261 490 8.78E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 Pfam PF00005 ABC transporter 23 174 1.2E-29 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 Pfam PF00005 ABC transporter 274 429 3.2E-23 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 Gene3D G3DSA:3.40.50.300 256 501 3.0E-38 T 28-03-2018 AM348_RS11470 d1a157cadf7afec622fd0d400040263f 502 Gene3D G3DSA:3.40.50.300 3 241 1.9E-50 T 28-03-2018 AM348_RS11035 68c5d995421858454c414da463f9ff64 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.2E-170 T 28-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AM348_RS11035 68c5d995421858454c414da463f9ff64 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 511 1.3E-18 T 28-03-2018 IPR003395 RecF/RecN/SMC, N-terminal AM348_RS11035 68c5d995421858454c414da463f9ff64 553 Gene3D G3DSA:3.40.50.300 224 533 7.7E-18 T 28-03-2018 AM348_RS11035 68c5d995421858454c414da463f9ff64 553 Gene3D G3DSA:3.40.50.300 1 223 7.1E-26 T 28-03-2018 AM348_RS11035 68c5d995421858454c414da463f9ff64 553 PIRSF PIRSF003128 1 553 3.3E-159 T 28-03-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 AM348_RS11035 68c5d995421858454c414da463f9ff64 553 SUPERFAMILY SSF52540 1 217 6.08E-67 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11035 68c5d995421858454c414da463f9ff64 553 SUPERFAMILY SSF52540 4 50 7.96E-30 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11035 68c5d995421858454c414da463f9ff64 553 SUPERFAMILY SSF52540 284 506 7.96E-30 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 Gene3D G3DSA:1.10.287.110 1 79 1.2E-9 T 28-03-2018 IPR001623 DnaJ domain AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 168 4.4E-63 T 28-03-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 SUPERFAMILY SSF47144 77 170 7.72E-25 T 28-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 SUPERFAMILY SSF46565 1 75 1.83E-17 T 28-03-2018 IPR001623 DnaJ domain AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 169 24.746 T 28-03-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 160 2.8E-17 T 28-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 Gene3D G3DSA:1.20.1280.20 81 170 2.0E-24 T 28-03-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS11525 3a9f7c3435bb864a0cf775029642ae83 171 SMART SM00271 1 66 4.5E-8 T 28-03-2018 IPR001623 DnaJ domain AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Pfam PF12245 Bacterial Ig-like domain (group 3) 1427 1447 3.7 T 28-03-2018 IPR022038 Bacterial Ig-like domain AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Pfam PF12245 Bacterial Ig-like domain (group 3) 1814 1839 0.3 T 28-03-2018 IPR022038 Bacterial Ig-like domain AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Pfam PF12245 Bacterial Ig-like domain (group 3) 2436 2461 1.5 T 28-03-2018 IPR022038 Bacterial Ig-like domain AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.120.640 3505 3631 1.2E-8 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.120.640 3255 3377 1.8E-8 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3297 3323 0.0029 T 28-03-2018 IPR010221 VCBS repeat AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3051 3105 0.0032 T 28-03-2018 IPR010221 VCBS repeat AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.10 177 264 8.4E-15 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3655 3732 4.6E-17 T 28-03-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1926 2028 8.4E-22 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2447 2548 1.9E-23 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1429 1526 1.4E-15 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1117 1220 2.7E-28 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2651 2738 1.1E-14 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1221 1324 2.6E-22 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 735 807 1.9E-11 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 908 1008 1.6E-17 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 473 550 4.3E-13 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2334 2446 2.0E-27 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2029 2131 2.3E-22 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1009 1116 5.5E-22 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1325 1428 3.4E-19 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1733 1821 2.7E-15 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 361 472 9.2E-19 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2236 2333 1.8E-18 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1822 1925 1.7E-25 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 265 360 4.4E-20 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2549 2650 2.0E-21 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1636 1732 1.0E-12 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 639 734 4.2E-16 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2132 2235 1.6E-26 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 551 638 1.6E-14 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 808 907 1.5E-18 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 1527 1635 9.0E-16 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.40.1310 2739 2869 6.7E-19 T 28-03-2018 AM348_RS11010 614e350cd8745e9af5559cd12e875b7b 3736 Gene3D G3DSA:2.60.220.10 2973 3105 8.0E-7 T 28-03-2018 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 8 457 8.5E-148 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 Gene3D G3DSA:1.20.1250.20 15 216 7.9E-36 T 28-03-2018 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 PRINTS PR00171 Sugar transporter signature 362 383 1.0E-19 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 PRINTS PR00171 Sugar transporter signature 33 43 1.0E-19 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 PRINTS PR00171 Sugar transporter signature 269 279 1.0E-19 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 PRINTS PR00171 Sugar transporter signature 116 135 1.0E-19 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 PRINTS PR00171 Sugar transporter signature 385 397 1.0E-19 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 Pfam PF00083 Sugar (and other) transporter 26 460 3.8E-133 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 Gene3D G3DSA:1.20.1250.20 226 470 6.8E-35 T 28-03-2018 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 SUPERFAMILY SSF103473 12 459 1.24E-72 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 ProSitePatterns PS00216 Sugar transport proteins signature 1. 314 330 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS09670 ad838c10b6cbe86f611f56d6f018789c 472 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.142 T 28-03-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 Gene3D G3DSA:4.10.520.10 1 99 3.1E-33 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 2.7E-30 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 28-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 SUPERFAMILY SSF47729 3 93 1.24E-31 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 SMART SM00411 3 92 1.2E-43 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS18850 ff9f1c18012a1e669f4c3d171249b8fc 99 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 7.6E-55 T 28-03-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 AM348_RS11340 4c9ff0a347919a9dbc61696604c2e788 178 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 25 166 49.621 T 28-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AM348_RS11340 4c9ff0a347919a9dbc61696604c2e788 178 SUPERFAMILY SSF53927 19 170 1.14E-60 T 28-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM348_RS11340 4c9ff0a347919a9dbc61696604c2e788 178 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 70 107 - T 28-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AM348_RS11340 4c9ff0a347919a9dbc61696604c2e788 178 Gene3D G3DSA:3.40.140.10 15 174 1.3E-53 T 28-03-2018 AM348_RS11340 4c9ff0a347919a9dbc61696604c2e788 178 Pfam PF14437 MafB19-like deaminase 20 166 2.4E-33 T 28-03-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 AM348_RS11705 fcff5b4f4c875d36ccea87f461b8c4b6 487 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 4 484 42.265 T 28-03-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 AM348_RS11705 fcff5b4f4c875d36ccea87f461b8c4b6 487 Pfam PF14559 Tetratricopeptide repeat 354 418 7.8E-10 T 28-03-2018 AM348_RS11705 fcff5b4f4c875d36ccea87f461b8c4b6 487 SUPERFAMILY SSF48452 311 453 8.85E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS11705 fcff5b4f4c875d36ccea87f461b8c4b6 487 Gene3D G3DSA:3.30.2010.10 67 154 5.3E-16 T 28-03-2018 AM348_RS11705 fcff5b4f4c875d36ccea87f461b8c4b6 487 Pfam PF01435 Peptidase family M48 72 259 3.8E-25 T 28-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM348_RS11705 fcff5b4f4c875d36ccea87f461b8c4b6 487 Gene3D G3DSA:1.25.20.10 302 484 3.8E-15 T 28-03-2018 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Pfam PF09134 Invasin, domain 3 561 646 7.7E-7 T 28-03-2018 IPR015217 Invasin, domain 3 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Pfam PF09134 Invasin, domain 3 458 547 3.8E-14 T 28-03-2018 IPR015217 Invasin, domain 3 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SUPERFAMILY SSF49373 774 850 1.47E-10 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.40.1120 697 781 1.4E-5 T 28-03-2018 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SUPERFAMILY SSF49373 859 946 2.16E-8 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SUPERFAMILY SSF49373 969 1067 1.02E-9 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 PRINTS PR01369 Intimin signature 284 303 1.2E-12 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 PRINTS PR01369 Intimin signature 188 203 1.2E-12 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 PRINTS PR01369 Intimin signature 216 235 1.2E-12 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 PRINTS PR01369 Intimin signature 372 384 1.2E-12 T 28-03-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SUPERFAMILY SSF49373 460 546 2.04E-13 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Pfam PF02369 Bacterial Ig-like domain (group 1) 764 854 9.3E-9 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Pfam PF02369 Bacterial Ig-like domain (group 1) 672 751 4.0E-11 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Pfam PF11924 Inverse autotransporter, beta-domain 74 336 1.5E-103 T 28-03-2018 IPR024519 Inverse autotransporter, beta-domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SMART SM00634 662 753 4.2E-12 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SMART SM00634 1074 1167 0.022 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SMART SM00634 866 956 0.015 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SMART SM00634 968 1062 0.006 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SMART SM00634 761 853 5.7E-10 T 28-03-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 SUPERFAMILY SSF49373 665 754 1.22E-15 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.120.260 333 500 6.8E-14 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.120.260 908 1016 2.1E-11 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.120.260 1020 1120 7.7E-12 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.120.260 501 601 1.5E-11 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.120.260 602 696 2.0E-13 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS10985 edca9415df7f8dcb00f6cd80be5fbddc 1180 Gene3D G3DSA:2.60.120.260 782 907 5.4E-17 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS02495 18536a112c25903577b5723e03685900 472 Pfam PF00367 phosphotransferase system, EIIB 12 39 1.3E-11 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS02495 18536a112c25903577b5723e03685900 472 Pfam PF02378 Phosphotransferase system, EIIC 112 404 1.5E-32 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS02495 18536a112c25903577b5723e03685900 472 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 1.4E-16 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS02495 18536a112c25903577b5723e03685900 472 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 7 460 1.5E-217 T 28-03-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00230+2.7.1.20|KEGG: 00500+2.7.1.201|MetaCyc: PWY-6619 AM348_RS02495 18536a112c25903577b5723e03685900 472 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS02495 18536a112c25903577b5723e03685900 472 SUPERFAMILY SSF55604 10 81 1.19E-17 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS02495 18536a112c25903577b5723e03685900 472 Gene3D G3DSA:3.30.1360.60 5 78 1.3E-21 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS13810 235419d1168b92973421cbe717e8c85e 182 Gene3D G3DSA:2.60.120.10 1 182 5.4E-81 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS13810 235419d1168b92973421cbe717e8c85e 182 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 163 2.0E-76 T 28-03-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AM348_RS13810 235419d1168b92973421cbe717e8c85e 182 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 177 4.6E-84 T 28-03-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AM348_RS13810 235419d1168b92973421cbe717e8c85e 182 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 176 2.9E-77 T 28-03-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 AM348_RS13810 235419d1168b92973421cbe717e8c85e 182 SUPERFAMILY SSF51182 1 180 8.7E-83 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 SMART SM00354 26 96 5.9E-27 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 Gene3D G3DSA:3.40.50.2300 83 193 2.9E-25 T 28-03-2018 AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 Pfam PF13377 Periplasmic binding protein-like domain 193 350 8.1E-26 T 28-03-2018 AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 SUPERFAMILY SSF53822 83 331 2.36E-53 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 Gene3D G3DSA:3.40.50.2300 194 351 3.3E-36 T 28-03-2018 AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 Pfam PF00356 Bacterial regulatory proteins, lacI family 28 73 6.1E-16 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 Gene3D G3DSA:1.10.260.40 28 82 1.7E-19 T 28-03-2018 AM348_RS17290 632d936a6cfe5bdbafda3ab02515c11a 351 SUPERFAMILY SSF47413 26 84 4.66E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Gene3D G3DSA:3.40.1030.10 276 530 1.3E-90 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 SUPERFAMILY SSF52317 3 191 7.83E-45 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Gene3D G3DSA:1.20.970.10 193 275 3.8E-16 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 2.2E-54 T 28-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Gene3D G3DSA:3.40.50.880 1 192 3.4E-45 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 3.5E-5 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 3.5E-5 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 8.1E-13 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 8.1E-13 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 8.1E-13 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Pfam PF02885 Glycosyl transferase family, helical bundle domain 202 262 2.0E-14 T 28-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 SUPERFAMILY SSF52418 269 527 2.49E-90 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Pfam PF00117 Glutamine amidotransferase class-I 6 186 2.2E-44 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Pfam PF00591 Glycosyl transferase family, a/b domain 273 521 2.1E-100 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 204 528 4.3E-129 T 28-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 202 530 38.619 T 28-03-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 SUPERFAMILY SSF47648 200 266 4.45E-16 T 28-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00097 Anthranilate synthase component II signature 52 61 2.4E-33 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00097 Anthranilate synthase component II signature 124 136 2.4E-33 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00097 Anthranilate synthase component II signature 4 18 2.4E-33 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00097 Anthranilate synthase component II signature 79 90 2.4E-33 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00097 Anthranilate synthase component II signature 104 112 2.4E-33 T 28-03-2018 AM348_RS16415 fe31ec0302a76736bae21abaf951edac 531 PRINTS PR00097 Anthranilate synthase component II signature 166 179 2.4E-33 T 28-03-2018 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Gene3D G3DSA:3.30.450.20 484 551 0.014 T 28-03-2018 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Pfam PF00563 EAL domain 893 1092 1.3E-21 T 28-03-2018 IPR001633 EAL domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00052 862 1099 5.3E-14 T 28-03-2018 IPR001633 EAL domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Pfam PF13426 PAS domain 314 415 1.6E-8 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Gene3D G3DSA:3.30.450.20 439 483 1.1E-11 T 28-03-2018 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Gene3D G3DSA:3.30.450.20 552 687 9.0E-22 T 28-03-2018 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Gene3D G3DSA:3.30.450.20 287 437 1.2E-24 T 28-03-2018 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 680 842 1.2E-35 T 28-03-2018 IPR000160 GGDEF domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 299 421 9.9E-30 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 553 676 1.5E-12 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SUPERFAMILY SSF55785 541 669 1.08E-18 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SUPERFAMILY SSF141868 894 1101 3.79E-22 T 28-03-2018 IPR001633 EAL domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SUPERFAMILY SSF55785 295 414 5.48E-20 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Gene3D G3DSA:3.20.20.450 846 1101 6.0E-24 T 28-03-2018 IPR001633 EAL domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SUPERFAMILY SSF55785 438 545 4.54E-13 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SUPERFAMILY SSF55073 687 845 1.02E-45 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00267 671 843 1.9E-60 T 28-03-2018 IPR000160 GGDEF domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Pfam PF08447 PAS fold 452 537 5.7E-10 T 28-03-2018 IPR013655 PAS fold-3 GO:0005515 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Pfam PF00990 Diguanylate cyclase, GGDEF domain 682 838 2.9E-43 T 28-03-2018 IPR000160 GGDEF domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Pfam PF08448 PAS fold 561 672 2.4E-10 T 28-03-2018 IPR013656 PAS fold-4 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Gene3D G3DSA:3.30.70.270 688 845 2.7E-53 T 28-03-2018 AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00091 555 623 4.2E-6 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00091 302 368 1.3E-9 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00091 429 496 6.1 T 28-03-2018 IPR000014 PAS domain AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00086 629 671 7.8E-4 T 28-03-2018 IPR001610 PAC motif AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00086 502 543 2.2E-5 T 28-03-2018 IPR001610 PAC motif AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 SMART SM00086 375 417 4.6E-8 T 28-03-2018 IPR001610 PAC motif AM348_RS13655 3a83c4ce56e2df23aece7fa313302bbc 1109 Pfam PF05231 MASE1 19 294 2.0E-39 T 28-03-2018 IPR007895 MASE1 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Gene3D G3DSA:1.10.150.20 568 610 3.0E-11 T 28-03-2018 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 SMART SM00465 17 98 2.7E-23 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 SMART SM00278 556 575 1.1 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 SMART SM00278 588 607 15.0 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Gene3D G3DSA:4.10.860.10 182 242 1.5E-16 T 28-03-2018 IPR001943 UVR domain GO:0005515 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 SUPERFAMILY SSF46600 190 243 1.83E-14 T 28-03-2018 IPR001943 UVR domain GO:0005515 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 386 542 1.4E-45 T 28-03-2018 IPR001162 UvrC family homology region AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Pfam PF02151 UvrB/uvrC motif 205 237 6.6E-10 T 28-03-2018 IPR001943 UVR domain GO:0005515 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 9 589 1.6E-239 T 28-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 SUPERFAMILY SSF82771 17 100 9.68E-25 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 2.1E-12 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Gene3D G3DSA:1.10.150.20 526 567 0.21 T 28-03-2018 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 SUPERFAMILY SSF47781 521 607 7.94E-18 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 30.378 T 28-03-2018 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Pfam PF14520 Helix-hairpin-helix domain 558 607 4.5E-8 T 28-03-2018 AM348_RS14540 e1b99dfb7dd1e48e3746e3690ce576e5 610 Gene3D G3DSA:3.40.1440.10 4 101 3.9E-24 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 Gene3D G3DSA:1.20.1250.20 4 195 7.4E-26 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 432 1.4E-78 T 28-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 Gene3D G3DSA:1.20.1250.20 256 464 4.2E-21 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 Pfam PF07690 Major Facilitator Superfamily 17 406 2.1E-45 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 200 218 3.1E-9 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 3.1E-9 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 15 39 3.1E-9 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 3.1E-9 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 3.1E-9 T 28-03-2018 AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 SUPERFAMILY SSF103473 13 195 6.93E-59 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05175 de0ddedeeb638fc3f2af389068a7a44e 475 SUPERFAMILY SSF103473 245 453 6.93E-59 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 Gene3D G3DSA:3.40.640.10 57 270 1.2E-45 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 SUPERFAMILY SSF53383 3 381 2.69E-107 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 384 48.959 T 28-03-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 Gene3D G3DSA:3.90.1150.10 271 385 2.3E-33 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 28-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 381 7.1E-144 T 28-03-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 AM348_RS21365 9264c3ab0f4abf4e35a7c67a12d94565 385 Pfam PF00155 Aminotransferase class I and II 40 380 3.0E-67 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 3.7E-19 T 28-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 3.7E-19 T 28-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 3.7E-19 T 28-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 3.7E-19 T 28-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 251 1.3E-74 T 28-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 PIRSF PIRSF000398 1 272 1.3E-72 T 28-03-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 SUPERFAMILY SSF53335 5 267 4.9E-80 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS07095 793ab39d57a8abea63fe588792614644 278 Gene3D G3DSA:3.40.50.150 151 269 4.0E-19 T 28-03-2018 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 Gene3D G3DSA:1.10.1020.10 57 150 1.7E-33 T 28-03-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 AM348_RS07095 793ab39d57a8abea63fe588792614644 278 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 267 1.3E-102 T 28-03-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 Gene3D G3DSA:3.40.50.720 3 261 9.3E-45 T 28-03-2018 AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 PIRSF PIRSF000094 1 260 3.6E-125 T 28-03-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 SUPERFAMILY SSF51735 6 253 1.07E-62 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.6E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.6E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16555 e0a207492977d32a31f9e9558fc11f3a 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 252 2.5E-86 T 28-03-2018 AM348_RS00535 7df6ac805a3ef92f7cab93bd55dc3b2b 242 SUPERFAMILY SSF53098 7 183 1.3E-51 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS00535 7df6ac805a3ef92f7cab93bd55dc3b2b 242 SMART SM00479 7 184 3.4E-51 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS00535 7df6ac805a3ef92f7cab93bd55dc3b2b 242 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 241 3.7E-96 T 28-03-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS00535 7df6ac805a3ef92f7cab93bd55dc3b2b 242 Gene3D G3DSA:3.30.420.10 2 189 2.3E-39 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS00535 7df6ac805a3ef92f7cab93bd55dc3b2b 242 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 224 6.0E-97 T 28-03-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS00535 7df6ac805a3ef92f7cab93bd55dc3b2b 242 Pfam PF00929 Exonuclease 9 175 3.3E-42 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS19880 72d64a15bcd010475884fdf0693fc539 317 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 141 2.8E-34 T 28-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AM348_RS19880 72d64a15bcd010475884fdf0693fc539 317 Gene3D G3DSA:1.20.1330.10 38 291 5.7E-25 T 28-03-2018 AM348_RS19880 72d64a15bcd010475884fdf0693fc539 317 SUPERFAMILY SSF64518 1 315 1.83E-59 T 28-03-2018 AM348_RS19880 72d64a15bcd010475884fdf0693fc539 317 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 188 2.3E-68 T 28-03-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Gene3D G3DSA:3.40.50.300 253 424 5.1E-46 T 28-03-2018 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Gene3D G3DSA:3.40.50.300 76 235 2.4E-29 T 28-03-2018 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Pfam PF11898 Domain of unknown function (DUF3418) 713 1297 3.5E-236 T 28-03-2018 IPR024590 RNA helicase HrpA, C-terminal AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 SMART SM00490 304 404 2.7E-15 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 SMART SM00847 464 559 1.1E-37 T 28-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Pfam PF00270 DEAD/DEAH box helicase 85 233 9.6E-6 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 622 698 1.1E-17 T 28-03-2018 IPR011709 Domain of unknown function DUF1605 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Pfam PF00271 Helicase conserved C-terminal domain 286 403 6.7E-11 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 SUPERFAMILY SSF52540 74 598 4.07E-111 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 SMART SM00382 92 384 3.6E-5 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 SMART SM00487 75 259 6.1E-27 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 13 1297 0.0 T 28-03-2018 IPR010222 RNA helicase HrpA GO:0004004 AM348_RS16850 3e4d5f629b83e92e27d0b54794d3f856 1300 Pfam PF04408 Helicase associated domain (HA2) 466 557 2.9E-17 T 28-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM348_RS12155 fb14ac96a79087526c629caa17100033 411 PRINTS PR00762 Chloride channel signature 320 340 3.4E-6 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS12155 fb14ac96a79087526c629caa17100033 411 PRINTS PR00762 Chloride channel signature 103 122 3.4E-6 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS12155 fb14ac96a79087526c629caa17100033 411 PRINTS PR00762 Chloride channel signature 153 172 3.4E-6 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS12155 fb14ac96a79087526c629caa17100033 411 SUPERFAMILY SSF81340 9 398 4.19E-41 T 28-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM348_RS12155 fb14ac96a79087526c629caa17100033 411 Hamap MF_01115 Putative ion-transport protein YfeO [yfeO]. 9 410 38.328 T 28-03-2018 IPR022969 Chloride channel YfeO AM348_RS12155 fb14ac96a79087526c629caa17100033 411 Pfam PF00654 Voltage gated chloride channel 93 363 2.0E-18 T 28-03-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 AM348_RS12155 fb14ac96a79087526c629caa17100033 411 Gene3D G3DSA:1.10.3080.10 4 399 5.7E-31 T 28-03-2018 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 AM348_RS09030 66b350acd1f8e6b051ed7ffec1abe07a 619 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 251 615 9.7E-65 T 28-03-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain AM348_RS09030 66b350acd1f8e6b051ed7ffec1abe07a 619 SUPERFAMILY SSF56059 206 379 9.53E-74 T 28-03-2018 AM348_RS09030 66b350acd1f8e6b051ed7ffec1abe07a 619 SUPERFAMILY SSF56059 497 614 9.53E-74 T 28-03-2018 AM348_RS09030 66b350acd1f8e6b051ed7ffec1abe07a 619 SUPERFAMILY SSF52440 380 510 4.89E-37 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS09030 66b350acd1f8e6b051ed7ffec1abe07a 619 SUPERFAMILY SSF54001 10 196 1.67E-60 T 28-03-2018 AM348_RS09030 66b350acd1f8e6b051ed7ffec1abe07a 619 Pfam PF05257 CHAP domain 52 149 1.3E-11 T 28-03-2018 IPR007921 CHAP domain AM348_RS14205 6577910d9949bdbd99ebf058cb82f8ab 254 SUPERFAMILY SSF55486 33 244 9.52E-41 T 28-03-2018 AM348_RS14205 6577910d9949bdbd99ebf058cb82f8ab 254 Pfam PF06167 Glucose-regulated metallo-peptidase M90 23 243 1.4E-63 T 28-03-2018 IPR010384 MtfA family AM348_RS14205 6577910d9949bdbd99ebf058cb82f8ab 254 Hamap MF_01593 Protein MtfA [mtfA]. 1 254 60.39 T 28-03-2018 IPR010384 MtfA family AM348_RS14205 6577910d9949bdbd99ebf058cb82f8ab 254 Gene3D G3DSA:3.40.390.10 80 246 4.7E-24 T 28-03-2018 IPR024079 Metallopeptidase, catalytic domain GO:0008237 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 253 8.4E-62 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 PIRSF PIRSF000538 6 503 5.4E-125 T 28-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 SUPERFAMILY SSF53067 260 498 2.3E-59 T 28-03-2018 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 Gene3D G3DSA:3.30.420.40 3 249 2.2E-67 T 28-03-2018 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 454 3.0E-43 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 Gene3D G3DSA:3.30.420.40 250 500 2.4E-55 T 28-03-2018 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 367 387 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS22430 eebef8964b199e2b8c967db79d42035e 506 SUPERFAMILY SSF53067 8 253 6.72E-74 T 28-03-2018 AM348_RS06330 1dfaeec1ce88a1b4b198b2c744b07629 398 PIRSF PIRSF001434 1 397 4.9E-154 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS06330 1dfaeec1ce88a1b4b198b2c744b07629 398 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 8 393 4.9E-172 T 28-03-2018 IPR006237 L-methionine gamma-lyase GO:0018826 KEGG: 00270+4.4.1.11|KEGG: 00450+4.4.1.11|KEGG: 00920+4.4.1.2|MetaCyc: PWY-7793 AM348_RS06330 1dfaeec1ce88a1b4b198b2c744b07629 398 Gene3D G3DSA:3.90.1150.10 263 398 4.1E-53 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS06330 1dfaeec1ce88a1b4b198b2c744b07629 398 SUPERFAMILY SSF53383 29 395 4.49E-128 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS06330 1dfaeec1ce88a1b4b198b2c744b07629 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 11 393 3.4E-157 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS06330 1dfaeec1ce88a1b4b198b2c744b07629 398 Gene3D G3DSA:3.40.640.10 7 261 4.2E-67 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS11925 0972464b1ec06dc1c7f894ab3a200768 289 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 59 273 4.3E-52 T 28-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM348_RS11925 0972464b1ec06dc1c7f894ab3a200768 289 Gene3D G3DSA:3.40.630.40 54 280 7.9E-58 T 28-03-2018 AM348_RS11925 0972464b1ec06dc1c7f894ab3a200768 289 SMART SM00646 118 273 1.8E-67 T 28-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM348_RS11925 0972464b1ec06dc1c7f894ab3a200768 289 SUPERFAMILY SSF53187 200 277 5.02E-55 T 28-03-2018 AM348_RS11925 0972464b1ec06dc1c7f894ab3a200768 289 SUPERFAMILY SSF53187 57 152 5.02E-55 T 28-03-2018 AM348_RS06930 9e992ef8ef120e257b8ee6fde7006b28 277 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 274 45.572 T 28-03-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 AM348_RS06930 9e992ef8ef120e257b8ee6fde7006b28 277 Gene3D G3DSA:1.20.1540.10 91 269 1.9E-38 T 28-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AM348_RS06930 9e992ef8ef120e257b8ee6fde7006b28 277 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 270 2.8E-117 T 28-03-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 AM348_RS06930 9e992ef8ef120e257b8ee6fde7006b28 277 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 83 1.8E-29 T 28-03-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 AM348_RS06930 9e992ef8ef120e257b8ee6fde7006b28 277 SUPERFAMILY SSF144091 92 267 2.09E-45 T 28-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AM348_RS06930 9e992ef8ef120e257b8ee6fde7006b28 277 Pfam PF01694 Rhomboid family 132 267 4.2E-29 T 28-03-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 AM348_RS02080 4a0a182bc108b1f8915d91f6a411ada7 69 Gene3D G3DSA:1.10.1220.10 10 66 1.4E-4 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 SMART SM00388 240 304 3.1E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 SUPERFAMILY SSF47384 223 304 9.61E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 SUPERFAMILY SSF158472 187 236 1.44E-9 T 28-03-2018 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 Gene3D G3DSA:1.10.287.130 230 299 2.8E-13 T 28-03-2018 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 SUPERFAMILY SSF55874 293 459 1.31E-38 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS13620 7c93ca9529a226926414625988b7f111 467 Pfam PF00672 HAMP domain 187 235 8.2E-13 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 304 4.6E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 1.8E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 1.8E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 1.8E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 1.8E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 460 7.2E-20 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS13620 7c93ca9529a226926414625988b7f111 467 SMART SM00304 187 239 2.1E-14 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS13620 7c93ca9529a226926414625988b7f111 467 Gene3D G3DSA:3.30.565.10 308 466 2.7E-37 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS13620 7c93ca9529a226926414625988b7f111 467 SMART SM00387 349 461 5.6E-34 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 233 9.4E-64 T 28-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 SMART SM00363 3 74 1.1E-10 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 Gene3D G3DSA:3.10.290.10 1 61 3.1E-14 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 Pfam PF01479 S4 domain 4 43 2.0E-11 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 Gene3D G3DSA:3.30.70.580 62 150 5.4E-17 T 28-03-2018 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 Gene3D G3DSA:3.30.70.1560 151 219 2.4E-21 T 28-03-2018 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 SUPERFAMILY SSF55174 5 100 1.12E-13 T 28-03-2018 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 SUPERFAMILY SSF55120 69 235 1.44E-42 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 Pfam PF00849 RNA pseudouridylate synthase 69 199 8.6E-16 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS16440 6f3699e815028981b0888cc0d0d87d94 291 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 28-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 SUPERFAMILY SSF46548 277 392 5.23E-19 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 362 373 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 312 323 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 Pfam PF11870 Domain of unknown function (DUF3390) 387 468 2.1E-11 T 28-03-2018 IPR024569 4Fe-4S binding protein, C-terminal AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 Pfam PF13183 4Fe-4S dicluster domain 309 376 1.4E-11 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 Pfam PF02589 LUD domain 72 294 1.2E-55 T 28-03-2018 IPR003741 LUD domain AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 18 453 1.3E-229 T 28-03-2018 IPR004452 4Fe-4S binding protein GO:0019516 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 Gene3D G3DSA:1.10.1060.10 295 398 3.0E-15 T 28-03-2018 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 Gene3D G3DSA:3.40.50.10420 63 138 7.7E-8 T 28-03-2018 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 Gene3D G3DSA:3.40.50.10420 139 294 9.7E-46 T 28-03-2018 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 SUPERFAMILY SSF100950 65 89 1.63E-40 T 28-03-2018 AM348_RS02110 4875759927a6a3da3093da5520a3b347 475 SUPERFAMILY SSF100950 135 295 1.63E-40 T 28-03-2018 AM348_RS12655 373cf4d719a11c4e6bf5b8188102b47b 153 Pfam PF13673 Acetyltransferase (GNAT) domain 37 149 1.7E-17 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS12655 373cf4d719a11c4e6bf5b8188102b47b 153 Gene3D G3DSA:3.40.630.30 1 153 1.2E-33 T 28-03-2018 AM348_RS12655 373cf4d719a11c4e6bf5b8188102b47b 153 SUPERFAMILY SSF55729 1 150 5.75E-35 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 Pfam PF03772 Competence protein 201 469 3.0E-53 T 28-03-2018 IPR004477 ComEC/Rec2-related protein AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 221 404 8.7E-52 T 28-03-2018 IPR004477 ComEC/Rec2-related protein AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 67 718 1.0E-265 T 28-03-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 Pfam PF00753 Metallo-beta-lactamase superfamily 505 679 3.3E-17 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 SUPERFAMILY SSF56281 498 742 3.14E-42 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 SMART SM00849 508 689 3.4E-5 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20740 6ff65fa1b52f15d7274ef1cf4a709883 754 Gene3D G3DSA:3.60.15.10 493 720 9.6E-20 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SUPERFAMILY SSF52540 8 340 3.02E-101 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SUPERFAMILY SSF52540 779 987 2.84E-49 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Pfam PF02559 CarD-like/TRCF domain 477 572 5.3E-25 T 28-03-2018 IPR003711 CarD-like/TRCF domain AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SUPERFAMILY SSF143517 992 1144 8.24E-45 T 28-03-2018 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Gene3D G3DSA:3.40.50.300 214 788 3.1E-43 T 28-03-2018 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 28-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SMART SM00487 597 787 2.5E-35 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SUPERFAMILY SSF52540 351 463 1.06E-28 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 31 1125 28.856 T 28-03-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SMART SM01058 476 573 1.8E-50 T 28-03-2018 IPR003711 CarD-like/TRCF domain AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Pfam PF00270 DEAD/DEAH box helicase 602 762 2.3E-20 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Pfam PF03461 TRCF domain 1006 1097 2.7E-28 T 28-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SMART SM00490 823 907 3.8E-19 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SUPERFAMILY SSF52540 520 780 3.34E-64 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Pfam PF00271 Helicase conserved C-terminal domain 802 906 4.2E-17 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SMART SM00982 1005 1105 1.5E-49 T 28-03-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Gene3D G3DSA:3.40.50.300 789 953 2.4E-26 T 28-03-2018 AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 SUPERFAMILY SSF141259 467 545 1.57E-23 T 28-03-2018 IPR003711 CarD-like/TRCF domain AM348_RS19480 2dc90f0c8ad1b29cd9e7a8156e70be36 1148 Gene3D G3DSA:3.30.2060.10 130 175 2.5E-5 T 28-03-2018 AM348_RS14965 d0391a8fbfa583140a162b1a1faf163e 267 Pfam PF02358 Trehalose-phosphatase 18 231 3.6E-51 T 28-03-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AM348_RS14965 d0391a8fbfa583140a162b1a1faf163e 267 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 18 213 1.6E-20 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS14965 d0391a8fbfa583140a162b1a1faf163e 267 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 14 241 6.6E-70 T 28-03-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 AM348_RS14965 d0391a8fbfa583140a162b1a1faf163e 267 SUPERFAMILY SSF56784 17 242 2.11E-39 T 28-03-2018 IPR023214 HAD-like domain AM348_RS14965 d0391a8fbfa583140a162b1a1faf163e 267 Gene3D G3DSA:3.40.50.1000 16 260 1.1E-22 T 28-03-2018 IPR023214 HAD-like domain AM348_RS11335 5ce5f2589f5ebb53b8c1ed4a01d89373 211 Gene3D G3DSA:3.40.50.1000 1 147 9.2E-6 T 28-03-2018 IPR023214 HAD-like domain AM348_RS11335 5ce5f2589f5ebb53b8c1ed4a01d89373 211 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 3 211 1.0E-128 T 28-03-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM348_RS11335 5ce5f2589f5ebb53b8c1ed4a01d89373 211 SUPERFAMILY SSF56784 5 137 8.0E-7 T 28-03-2018 IPR023214 HAD-like domain AM348_RS11335 5ce5f2589f5ebb53b8c1ed4a01d89373 211 Pfam PF12710 haloacid dehalogenase-like hydrolase 9 192 4.6E-11 T 28-03-2018 AM348_RS23240 1e87a03f0a6527c5176a15ea8b283a8c 204 Pfam PF00510 Cytochrome c oxidase subunit III 15 202 1.0E-15 T 28-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23240 1e87a03f0a6527c5176a15ea8b283a8c 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 8.6E-89 T 28-03-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 AM348_RS23240 1e87a03f0a6527c5176a15ea8b283a8c 204 SUPERFAMILY SSF81452 12 202 7.46E-60 T 28-03-2018 IPR000298 Cytochrome c oxidase-like subunit III GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23240 1e87a03f0a6527c5176a15ea8b283a8c 204 Gene3D G3DSA:1.20.120.80 19 204 9.2E-53 T 28-03-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 114 204 1.7E-12 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 SUPERFAMILY SSF56784 3 239 1.94E-59 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 Gene3D G3DSA:3.40.50.1000 2 36 0.069 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 Gene3D G3DSA:1.10.150.240 37 98 2.9E-22 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 209 4.6E-37 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 239 1.4E-97 T 28-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 95 209 1.3E-15 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 123 136 6.8E-13 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 170 6.8E-13 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 6.8E-13 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 172 192 6.8E-13 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 240 36.508 T 28-03-2018 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 AM348_RS07105 b2934d5e03b3df61f673b05b4f8f1ba3 252 Gene3D G3DSA:3.40.50.1000 99 247 2.3E-38 T 28-03-2018 IPR023214 HAD-like domain AM348_RS05090 233886bd87d16aa93ce3aa339108ab6a 397 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 392 55.846 T 28-03-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS05090 233886bd87d16aa93ce3aa339108ab6a 397 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 3.4E-38 T 28-03-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS05090 233886bd87d16aa93ce3aa339108ab6a 397 Pfam PF07055 Enoyl reductase FAD binding domain 323 386 2.7E-30 T 28-03-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS05090 233886bd87d16aa93ce3aa339108ab6a 397 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 8.0E-113 T 28-03-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS19550 dab11ce06ed6aaf107756c7cd4fa65b5 198 Gene3D G3DSA:2.160.10.10 1 175 3.4E-40 T 28-03-2018 AM348_RS19550 dab11ce06ed6aaf107756c7cd4fa65b5 198 SUPERFAMILY SSF51161 2 168 2.63E-44 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS19550 dab11ce06ed6aaf107756c7cd4fa65b5 198 TIGRFAM TIGR02287 PaaY: phenylacetic acid degradation protein PaaY 3 195 4.5E-105 T 28-03-2018 IPR011974 Phenylacetic acid degradation protein PaaY AM348_RS19550 dab11ce06ed6aaf107756c7cd4fa65b5 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 5.5E-8 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS19550 dab11ce06ed6aaf107756c7cd4fa65b5 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 45 1.8E-4 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 Pfam PF00072 Response regulator receiver domain 3 113 4.6E-27 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 Gene3D G3DSA:1.10.10.10 121 227 9.4E-31 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 SMART SM00448 1 112 1.2E-39 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 SMART SM00862 146 221 1.7E-26 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 6.7E-98 T 28-03-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 SUPERFAMILY SSF52172 1 177 1.22E-38 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 Gene3D G3DSA:3.40.50.2300 1 120 2.2E-32 T 28-03-2018 AM348_RS22610 94e763755dfc983bd3863ddcf42bd8e3 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 2.5E-26 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS19330 7cf594a982607913e41d8f7147acad62 695 Pfam PF07715 TonB-dependent Receptor Plug Domain 39 151 6.3E-27 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19330 7cf594a982607913e41d8f7147acad62 695 Gene3D G3DSA:2.40.170.20 155 695 1.2E-89 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19330 7cf594a982607913e41d8f7147acad62 695 Gene3D G3DSA:2.170.130.10 23 154 8.0E-33 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19330 7cf594a982607913e41d8f7147acad62 695 Pfam PF00593 TonB dependent receptor 214 694 2.0E-63 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19330 7cf594a982607913e41d8f7147acad62 695 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 678 695 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS19330 7cf594a982607913e41d8f7147acad62 695 SUPERFAMILY SSF56935 25 695 5.49E-130 T 28-03-2018 AM348_RS19745 5e945123fdb7799bc19383e159c7537e 257 SUPERFAMILY SSF56655 55 255 6.78E-16 T 28-03-2018 AM348_RS19745 5e945123fdb7799bc19383e159c7537e 257 Pfam PF00459 Inositol monophosphatase family 95 251 4.7E-8 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS19745 5e945123fdb7799bc19383e159c7537e 257 Gene3D G3DSA:3.30.540.10 9 162 2.1E-6 T 28-03-2018 AM348_RS03790 4e82b44d9059100ecc012fbe7b27a151 229 Hamap MF_00510 Peptidase E [pepE]. 1 215 48.974 T 28-03-2018 IPR023172 Peptidase S51, dipeptidase E GO:0016805 AM348_RS03790 4e82b44d9059100ecc012fbe7b27a151 229 Pfam PF03575 Peptidase family S51 3 202 1.1E-60 T 28-03-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 AM348_RS03790 4e82b44d9059100ecc012fbe7b27a151 229 SUPERFAMILY SSF52317 1 220 7.67E-44 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS03790 4e82b44d9059100ecc012fbe7b27a151 229 Gene3D G3DSA:3.40.50.880 1 229 6.9E-47 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 Gene3D G3DSA:1.10.10.60 1 57 3.1E-18 T 28-03-2018 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 SUPERFAMILY SSF46689 57 106 2.15E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 Gene3D G3DSA:1.10.10.60 58 107 6.7E-14 T 28-03-2018 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 Pfam PF12833 Helix-turn-helix domain 27 106 1.7E-23 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 SMART SM00342 21 104 2.3E-33 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 SUPERFAMILY SSF46689 4 56 5.27E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 2.4E-7 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS03470 02934e821868641fa2e1c2941a42d42e 107 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 2.4E-7 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS04155 b8f4a14751611459754eeae8a2a52f05 118 SUPERFAMILY SSF52794 9 103 2.09E-29 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS04155 b8f4a14751611459754eeae8a2a52f05 118 Gene3D G3DSA:3.40.50.2300 8 106 2.2E-36 T 28-03-2018 AM348_RS04155 b8f4a14751611459754eeae8a2a52f05 118 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 11 99 1.2E-14 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS04155 b8f4a14751611459754eeae8a2a52f05 118 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 10 91 3.5E-28 T 28-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 Gene3D G3DSA:3.40.50.150 67 260 1.3E-41 T 28-03-2018 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 SMART SM00138 2 259 4.1E-62 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 PRINTS PR00996 Glutamate methyltransferase family signature 200 214 5.2E-24 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 PRINTS PR00996 Glutamate methyltransferase family signature 61 73 5.2E-24 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 PRINTS PR00996 Glutamate methyltransferase family signature 219 242 5.2E-24 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 PRINTS PR00996 Glutamate methyltransferase family signature 134 150 5.2E-24 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 PRINTS PR00996 Glutamate methyltransferase family signature 99 119 5.2E-24 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 SUPERFAMILY SSF48452 300 430 1.02E-15 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 Gene3D G3DSA:1.25.40.10 380 436 5.9E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 SUPERFAMILY SSF47757 9 67 2.22E-8 T 28-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 SUPERFAMILY SSF53335 68 249 9.23E-44 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 Gene3D G3DSA:1.25.40.10 288 379 1.4E-12 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 54 1.3E-8 T 28-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 Pfam PF01739 CheR methyltransferase, SAM binding domain 68 250 9.6E-48 T 28-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AM348_RS10255 5fb694ced71775e394df59579bfd9963 470 Gene3D G3DSA:1.10.155.10 3 66 1.7E-11 T 28-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 Gene3D G3DSA:1.20.120.530 152 302 5.9E-15 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 Pfam PF07729 FCD domain 159 286 6.2E-9 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 SUPERFAMILY SSF46785 3 77 6.83E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 6.9E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 6.9E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 SUPERFAMILY SSF48008 158 294 1.05E-12 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 SMART SM00895 159 287 4.4E-10 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 59 8.5E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 Gene3D G3DSA:1.10.10.10 1 71 3.0E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01945 dc60c48c8203523c0953a001745aec19 304 Gene3D G3DSA:1.10.10.10 78 151 4.5E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05310 8bfa23572f9f55ee916f53f7f5072cd9 319 Gene3D G3DSA:1.10.3720.10 12 306 2.4E-31 T 28-03-2018 AM348_RS05310 8bfa23572f9f55ee916f53f7f5072cd9 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 304 1.0E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS05310 8bfa23572f9f55ee916f53f7f5072cd9 319 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 17 311 2.0E-93 T 28-03-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 AM348_RS05310 8bfa23572f9f55ee916f53f7f5072cd9 319 SUPERFAMILY SSF161098 28 303 4.02E-33 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Gene3D G3DSA:3.40.1110.10 458 555 3.1E-27 T 28-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF81665 675 714 1.83E-18 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF81665 334 428 1.83E-18 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF81665 186 237 1.83E-18 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF56784 491 726 6.05E-51 T 28-03-2018 IPR023214 HAD-like domain AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF56784 433 452 6.05E-51 T 28-03-2018 IPR023214 HAD-like domain AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Gene3D G3DSA:3.40.50.1000 556 693 8.1E-37 T 28-03-2018 IPR023214 HAD-like domain AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF55008 49 111 1.7E-15 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Pfam PF00403 Heavy-metal-associated domain 54 110 3.7E-11 T 28-03-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 183 728 2.7E-181 T 28-03-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Pfam PF00122 E1-E2 ATPase 234 414 7.5E-48 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 SUPERFAMILY SSF81653 236 333 7.98E-22 T 28-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 657 682 6.0E-6 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 599 615 6.0E-6 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 626 642 6.0E-6 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 206 705 1.2E-81 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Gene3D G3DSA:1.20.1110.10 124 457 5.0E-30 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 ProSitePatterns PS01047 Heavy-metal-associated domain. 54 83 - T 28-03-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 183 730 8.5E-164 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 283 297 7.1E-28 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 553 564 7.1E-28 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 575 585 7.1E-28 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 434 448 7.1E-28 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 626 645 7.1E-28 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 649 661 7.1E-28 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Pfam PF00702 haloacid dehalogenase-like hydrolase 433 639 3.0E-37 T 28-03-2018 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 436 442 - T 28-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM348_RS06700 3f12a334286fbece069243270358f3b0 732 Gene3D G3DSA:3.30.70.100 47 118 5.2E-16 T 28-03-2018 AM348_RS14195 316088be50f943ab4ac3b6b9a0f4cdcb 345 Pfam PF13343 Bacterial extracellular solute-binding protein 77 301 4.8E-20 T 28-03-2018 AM348_RS14195 316088be50f943ab4ac3b6b9a0f4cdcb 345 SUPERFAMILY SSF53850 30 342 4.17E-67 T 28-03-2018 AM348_RS14195 316088be50f943ab4ac3b6b9a0f4cdcb 345 PIRSF PIRSF002825 12 345 2.2E-77 T 28-03-2018 IPR026045 Ferric binding protein AM348_RS14195 316088be50f943ab4ac3b6b9a0f4cdcb 345 Gene3D G3DSA:3.40.190.10 29 147 5.4E-11 T 28-03-2018 AM348_RS14195 316088be50f943ab4ac3b6b9a0f4cdcb 345 Gene3D G3DSA:3.40.190.10 148 291 5.5E-25 T 28-03-2018 AM348_RS15240 9460a4c4ec23710f1326948389b72cb2 124 SUPERFAMILY SSF81296 26 124 1.4E-27 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS15240 9460a4c4ec23710f1326948389b72cb2 124 Pfam PF04234 CopC domain 27 123 7.4E-27 T 28-03-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 AM348_RS15240 9460a4c4ec23710f1326948389b72cb2 124 Gene3D G3DSA:2.60.40.1220 26 124 7.5E-32 T 28-03-2018 AM348_RS23620 2ff101ff9bb503fddfdb25b93a55ca76 343 Gene3D G3DSA:3.40.190.10 25 144 1.7E-11 T 28-03-2018 AM348_RS23620 2ff101ff9bb503fddfdb25b93a55ca76 343 SUPERFAMILY SSF53850 24 328 3.71E-71 T 28-03-2018 AM348_RS23620 2ff101ff9bb503fddfdb25b93a55ca76 343 Gene3D G3DSA:3.40.190.10 145 295 5.7E-36 T 28-03-2018 AM348_RS23620 2ff101ff9bb503fddfdb25b93a55ca76 343 Pfam PF13343 Bacterial extracellular solute-binding protein 75 288 4.2E-33 T 28-03-2018 AM348_RS23620 2ff101ff9bb503fddfdb25b93a55ca76 343 PIRSF PIRSF002825 1 340 4.2E-71 T 28-03-2018 IPR026045 Ferric binding protein AM348_RS13155 898b50188930abc789f16cb911a8af12 349 Pfam PF03601 Conserved hypothetical protein 698 18 326 5.0E-114 T 28-03-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 AM348_RS13155 898b50188930abc789f16cb911a8af12 349 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 14 346 9.1E-161 T 28-03-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 SUPERFAMILY SSF52172 3 133 1.85E-28 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 Gene3D G3DSA:1.10.10.10 150 210 3.7E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 SUPERFAMILY SSF46894 147 209 4.76E-19 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 SMART SM00421 147 204 3.4E-23 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 SMART SM00448 4 117 3.3E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.1E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.1E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.1E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 Gene3D G3DSA:3.40.50.2300 4 142 3.3E-29 T 28-03-2018 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 Pfam PF00072 Response regulator receiver domain 6 117 1.2E-27 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 4.6E-23 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22700 17b42947f306e6e17a7a4fde9eaacd48 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 SMART SM00228 267 349 1.7E-12 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 SMART SM00228 374 447 6.4E-8 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Gene3D G3DSA:2.30.42.10 262 366 2.3E-26 T 28-03-2018 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 SUPERFAMILY SSF50156 249 358 8.12E-22 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Pfam PF13365 Trypsin-like peptidase domain 92 228 8.3E-30 T 28-03-2018 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 SUPERFAMILY SSF50494 19 60 6.48E-63 T 28-03-2018 IPR009003 Peptidase S1, PA clan AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 SUPERFAMILY SSF50494 89 276 6.48E-63 T 28-03-2018 IPR009003 Peptidase S1, PA clan AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Pfam PF13180 PDZ domain 270 358 1.2E-17 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 453 1.5E-161 T 28-03-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Gene3D G3DSA:2.40.10.10 30 139 1.1E-33 T 28-03-2018 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 1.1E-58 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 1.1E-58 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 1.1E-58 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 1.1E-58 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 1.1E-58 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 1.1E-58 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 376 443 6.2E-11 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Gene3D G3DSA:2.30.42.10 367 455 1.2E-14 T 28-03-2018 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 Gene3D G3DSA:2.40.10.10 140 257 4.6E-40 T 28-03-2018 AM348_RS07800 258fabeb76437cd350fcca1be9b7d73c 455 SUPERFAMILY SSF50156 384 454 7.89E-15 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SMART SM00448 144 258 5.6E-12 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SMART SM00448 270 383 9.1E-23 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Pfam PF01627 Hpt domain 20 101 1.6E-8 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SUPERFAMILY SSF52172 145 263 1.14E-20 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Gene3D G3DSA:3.30.70.270 401 558 2.7E-52 T 28-03-2018 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SMART SM00073 17 114 0.0095 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 397 556 1.3E-46 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Gene3D G3DSA:3.40.50.2300 139 266 2.8E-20 T 28-03-2018 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Gene3D G3DSA:3.40.50.2300 269 400 1.3E-25 T 28-03-2018 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Gene3D G3DSA:1.20.120.160 15 114 1.4E-11 T 28-03-2018 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Pfam PF00990 Diguanylate cyclase, GGDEF domain 399 553 1.4E-43 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Pfam PF00072 Response regulator receiver domain 272 383 2.2E-21 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 Pfam PF00072 Response regulator receiver domain 146 258 1.6E-12 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SUPERFAMILY SSF47226 19 109 7.59E-12 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SUPERFAMILY SSF52172 268 399 9.25E-28 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SMART SM00267 386 557 3.2E-47 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10270 590335a5573c8d8d56d0f611d59cbd36 558 SUPERFAMILY SSF55073 402 556 1.49E-46 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 28-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 15 250 5.2E-113 T 28-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 SUPERFAMILY SSF53335 18 249 8.83E-53 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.484 T 28-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 Gene3D G3DSA:3.40.50.150 2 250 1.2E-47 T 28-03-2018 AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 1.4E-89 T 28-03-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 AM348_RS04810 9343ee87d389e1df449f96e6437ed295 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 28-03-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AM348_RS17740 29bee8a92a1b327fe721bdf90ad3733c 299 SUPERFAMILY SSF103481 41 132 7.45E-11 T 28-03-2018 AM348_RS17740 29bee8a92a1b327fe721bdf90ad3733c 299 Pfam PF00892 EamA-like transporter family 7 130 1.1E-15 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS17740 29bee8a92a1b327fe721bdf90ad3733c 299 Pfam PF00892 EamA-like transporter family 143 286 3.1E-15 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS17740 29bee8a92a1b327fe721bdf90ad3733c 299 SUPERFAMILY SSF103481 210 287 2.75E-10 T 28-03-2018 AM348_RS08190 5f54e54d659c1b00dc39011b185e37ea 96 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 1 95 30.279 T 28-03-2018 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease AM348_RS08190 5f54e54d659c1b00dc39011b185e37ea 96 Pfam PF01541 GIY-YIG catalytic domain 4 75 1.4E-13 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS08190 5f54e54d659c1b00dc39011b185e37ea 96 SUPERFAMILY SSF82771 3 72 1.7E-11 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS08190 5f54e54d659c1b00dc39011b185e37ea 96 SMART SM00465 2 81 3.2E-5 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS08190 5f54e54d659c1b00dc39011b185e37ea 96 Gene3D G3DSA:3.40.1440.10 2 88 5.6E-6 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 115 233 9.2E-14 T 28-03-2018 IPR000014 PAS domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 SUPERFAMILY SSF55073 243 397 1.26E-45 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 Pfam PF13426 PAS domain 123 225 3.1E-8 T 28-03-2018 IPR000014 PAS domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 SMART SM00091 111 177 4.2E-4 T 28-03-2018 IPR000014 PAS domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 234 394 1.5E-36 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 Gene3D G3DSA:3.20.20.450 403 663 1.3E-89 T 28-03-2018 IPR001633 EAL domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 SUPERFAMILY SSF141868 412 658 1.44E-81 T 28-03-2018 IPR001633 EAL domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 Pfam PF00563 EAL domain 412 644 6.7E-64 T 28-03-2018 IPR001633 EAL domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 SMART SM00052 405 649 2.0E-117 T 28-03-2018 IPR001633 EAL domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 SUPERFAMILY SSF55785 124 234 3.32E-15 T 28-03-2018 IPR000014 PAS domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 SMART SM00267 226 395 1.7E-66 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 Gene3D G3DSA:3.30.450.20 99 234 5.0E-18 T 28-03-2018 AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 Gene3D G3DSA:3.30.70.270 235 402 8.2E-58 T 28-03-2018 AM348_RS16535 5eb739c0f96742c1ba2088122e4a7a35 663 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 390 2.9E-46 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18460 25615dda224c61d37d032df3a3525cb6 250 Pfam PF00005 ABC transporter 22 155 1.9E-23 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS18460 25615dda224c61d37d032df3a3525cb6 250 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS18460 25615dda224c61d37d032df3a3525cb6 250 SUPERFAMILY SSF52540 12 218 7.88E-47 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18460 25615dda224c61d37d032df3a3525cb6 250 SMART SM00382 29 204 9.2E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS18460 25615dda224c61d37d032df3a3525cb6 250 Gene3D G3DSA:3.40.50.300 2 238 7.8E-47 T 28-03-2018 AM348_RS10110 b2741a193e2a823286f8bb66540904d5 103 Gene3D G3DSA:1.20.5.1000 27 78 1.9E-4 T 28-03-2018 AM348_RS10110 b2741a193e2a823286f8bb66540904d5 103 Pfam PF04977 Septum formation initiator 11 89 1.2E-31 T 28-03-2018 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 AM348_RS10110 b2741a193e2a823286f8bb66540904d5 103 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 36.547 T 28-03-2018 IPR023081 Cell division protein FtsB AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 Gene3D G3DSA:3.40.50.1820 4 276 1.8E-56 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 SUPERFAMILY SSF53474 7 275 2.9E-62 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 Pfam PF00561 alpha/beta hydrolase fold 25 259 9.1E-25 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 7.7E-11 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 7.7E-11 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 7.7E-11 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 PRINTS PR00412 Epoxide hydrolase signature 30 48 8.5E-5 T 28-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 PRINTS PR00412 Epoxide hydrolase signature 217 233 8.5E-5 T 28-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM348_RS22235 838f54846b49eb5f7d7f43eb1e141a3d 276 PRINTS PR00412 Epoxide hydrolase signature 50 65 8.5E-5 T 28-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 SUPERFAMILY SSF52440 3 96 7.67E-29 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 PIRSF PIRSF039102 38 306 3.9E-99 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 PIRSF PIRSF039102 1 45 3.9E-7 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 28-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 6.8E-17 T 28-03-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 Gene3D G3DSA:3.40.50.20 1 106 5.7E-30 T 28-03-2018 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 36.562 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 SUPERFAMILY SSF56059 97 302 2.19E-58 T 28-03-2018 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 Gene3D G3DSA:3.30.1490.20 111 171 4.2E-18 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 28-03-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 4.1E-110 T 28-03-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 303 3.1E-71 T 28-03-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01200 e225b085da9d4a9af374d75981aff20b 306 Gene3D G3DSA:3.30.470.20 172 305 8.6E-38 T 28-03-2018 AM348_RS06685 c104bceb81c5cf91e768516282ebe1d6 185 Gene3D G3DSA:3.40.1000.10 43 185 2.0E-17 T 28-03-2018 AM348_RS06685 c104bceb81c5cf91e768516282ebe1d6 185 Pfam PF08786 DcrB 51 181 9.5E-31 T 28-03-2018 IPR014894 Protein DcrB AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 Gene3D G3DSA:1.10.10.10 1 85 6.8E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 SUPERFAMILY SSF53850 90 267 7.6E-19 T 28-03-2018 AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 Pfam PF03466 LysR substrate binding domain 90 286 8.7E-18 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 Gene3D G3DSA:3.40.190.10 179 253 4.9E-7 T 28-03-2018 AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 Gene3D G3DSA:3.40.190.10 91 178 6.8E-8 T 28-03-2018 AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.4E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS06570 42a96b3f9e5aa326cd90cf7b549d6cb0 286 SUPERFAMILY SSF46785 5 89 1.21E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 SUPERFAMILY SSF53850 1 242 4.01E-73 T 28-03-2018 AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 Gene3D G3DSA:3.40.190.10 133 243 7.2E-22 T 28-03-2018 AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 241 8.1E-90 T 28-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 SMART SM00062 22 242 2.0E-87 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 Gene3D G3DSA:3.40.190.10 8 132 2.1E-38 T 28-03-2018 AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 2.6E-71 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS13460 268ae8006e8c30f682f4e47f444b88e6 243 SMART SM00079 24 243 0.0021 T 28-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.1E-8 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.1E-8 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 Gene3D G3DSA:3.90.79.10 1 128 5.1E-31 T 28-03-2018 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 SUPERFAMILY SSF55811 1 126 7.31E-35 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 PRINTS PR01401 Mutator MutT protein signature 2 23 1.5E-13 T 28-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 PRINTS PR01401 Mutator MutT protein signature 77 90 1.5E-13 T 28-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 Pfam PF00293 NUDIX domain 7 125 1.1E-20 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS01165 4fa11865e9cfe06aecc26dd3b6ceaf68 129 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 126 1.5E-62 T 28-03-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 SMART SM00388 246 311 3.3E-8 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 Gene3D G3DSA:3.30.565.10 316 467 4.8E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 7.3E-5 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 7.3E-5 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 Pfam PF08521 Two-component sensor kinase N-terminal 21 169 2.2E-39 T 28-03-2018 IPR013727 Two-component sensor kinase, N-terminal AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 Gene3D G3DSA:1.20.5.1040 7 61 1.2E-6 T 28-03-2018 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 SUPERFAMILY SSF47384 229 308 6.87E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 SUPERFAMILY SSF55874 317 465 2.49E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 306 1.2E-6 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 SMART SM00304 193 245 9.2E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 SMART SM00387 358 469 1.1E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 464 4.8E-14 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10750 7fafa748988a20acb44f640f366c1451 470 Gene3D G3DSA:1.10.287.130 236 306 1.1E-6 T 28-03-2018 AM348_RS19835 a449268de87d901733be7c42e88344ec 359 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 345 142.763 T 28-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AM348_RS19835 a449268de87d901733be7c42e88344ec 359 SUPERFAMILY SSF53659 4 340 2.43E-104 T 28-03-2018 AM348_RS19835 a449268de87d901733be7c42e88344ec 359 Pfam PF02504 Fatty acid synthesis protein 5 331 2.4E-129 T 28-03-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 AM348_RS19835 a449268de87d901733be7c42e88344ec 359 Gene3D G3DSA:3.40.718.10 1 340 5.2E-118 T 28-03-2018 AM348_RS19835 a449268de87d901733be7c42e88344ec 359 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 345 3.6E-148 T 28-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AM348_RS19835 a449268de87d901733be7c42e88344ec 359 PIRSF PIRSF002465 2 343 6.5E-129 T 28-03-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Gene3D G3DSA:3.40.50.300 415 589 2.9E-31 T 28-03-2018 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 SUPERFAMILY SSF52540 459 582 3.49E-36 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 SUPERFAMILY SSF52540 37 82 3.49E-36 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 SUPERFAMILY SSF46600 626 669 4.84E-12 T 28-03-2018 IPR001943 UVR domain GO:0005515 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Pfam PF02151 UvrB/uvrC motif 634 667 7.3E-6 T 28-03-2018 IPR001943 UVR domain GO:0005515 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 SUPERFAMILY SSF52540 3 415 3.96E-139 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Pfam PF00271 Helicase conserved C-terminal domain 436 544 2.9E-17 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Pfam PF12344 Ultra-violet resistance protein B 552 593 8.0E-21 T 28-03-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 SMART SM00487 9 425 5.5E-28 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Gene3D G3DSA:4.10.860.10 611 673 6.7E-16 T 28-03-2018 IPR001943 UVR domain GO:0005515 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 SMART SM00490 460 546 4.7E-20 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 668 44.321 T 28-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Pfam PF04851 Type III restriction enzyme, res subunit 13 92 2.5E-9 T 28-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 Gene3D G3DSA:3.40.50.300 10 410 6.1E-34 T 28-03-2018 AM348_RS21340 bc398bed8a25abb6089053962f6d69e4 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 666 0.0 T 28-03-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 Gene3D G3DSA:3.40.50.10800 210 323 3.7E-31 T 28-03-2018 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 24 342 3.5E-124 T 28-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 SUPERFAMILY SSF142754 29 341 1.19E-106 T 28-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 71.086 T 28-03-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 Gene3D G3DSA:3.40.50.10800 118 209 1.3E-18 T 28-03-2018 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 Pfam PF02445 Quinolinate synthetase A protein 31 340 5.1E-102 T 28-03-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 AM348_RS21505 bf98dad05c52033b4557938fa99e4210 347 Gene3D G3DSA:3.40.50.10800 25 110 8.4E-18 T 28-03-2018 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 Gene3D G3DSA:3.40.50.720 1 281 6.8E-111 T 28-03-2018 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 2.9E-22 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 2.9E-22 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 2.9E-22 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 2.9E-22 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 Gene3D G3DSA:1.10.1040.10 282 488 6.9E-63 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 SUPERFAMILY SSF48179 283 484 3.23E-62 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 SUPERFAMILY SSF51735 7 281 3.74E-99 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 1.2E-50 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 28-03-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS13065 e3f286b53790ecedc0c13310cc47e1d2 488 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 216 462 5.0E-96 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Gene3D G3DSA:3.30.1490.100 250 363 1.1E-24 T 28-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Gene3D G3DSA:3.30.70.270 116 173 4.5E-12 T 28-03-2018 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Gene3D G3DSA:3.30.70.270 37 115 2.4E-17 T 28-03-2018 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Gene3D G3DSA:1.10.150.20 174 249 2.9E-15 T 28-03-2018 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Pfam PF13438 Domain of unknown function (DUF4113) 371 421 8.4E-22 T 28-03-2018 IPR025188 Domain of unknown function DUF4113 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 SUPERFAMILY SSF100879 250 346 2.51E-6 T 28-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 SUPERFAMILY SSF56672 1 237 3.11E-72 T 28-03-2018 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Pfam PF00817 impB/mucB/samB family 5 150 1.1E-39 T 28-03-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Pfam PF11798 IMS family HHH motif 172 200 4.3E-6 T 28-03-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 AM348_RS16890 fdb3e20ba060a6ae06ec731ccd8876a4 422 Pfam PF11799 impB/mucB/samB family C-terminal domain 242 352 1.3E-15 T 28-03-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 609 1.2E-272 T 28-03-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 Gene3D G3DSA:3.90.226.10 319 612 3.9E-50 T 28-03-2018 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 Pfam PF01343 Peptidase family S49 392 543 3.6E-53 T 28-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 Pfam PF01343 Peptidase family S49 141 294 5.8E-44 T 28-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 PIRSF PIRSF001217 8 618 4.2E-230 T 28-03-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 SUPERFAMILY SSF52096 31 181 3.23E-29 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 SUPERFAMILY SSF52096 212 287 3.23E-29 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 334 541 4.1E-54 T 28-03-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 SUPERFAMILY SSF52096 321 440 2.69E-42 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 SUPERFAMILY SSF52096 468 530 2.69E-42 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS19125 ae361614c655a1e01bac8ebba8508f98 618 Gene3D G3DSA:3.90.226.10 56 318 1.1E-25 T 28-03-2018 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 SUPERFAMILY SSF56507 903 1226 9.42E-135 T 28-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 938 1208 1.1E-126 T 28-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Gene3D G3DSA:3.20.20.330 2 337 5.5E-113 T 28-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 SUPERFAMILY SSF47644 653 739 4.18E-28 T 28-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 SUPERFAMILY SSF82282 7 399 8.89E-119 T 28-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Gene3D G3DSA:3.40.50.280 732 903 1.1E-56 T 28-03-2018 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Pfam PF00809 Pterin binding enzyme 360 598 1.2E-61 T 28-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 SMART SM01018 657 740 8.5E-44 T 28-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 TIGRFAM TIGR02082 metH: methionine synthase 12 1192 0.0 T 28-03-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Pfam PF02574 Homocysteine S-methyltransferase 17 325 2.7E-79 T 28-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 PIRSF PIRSF000381 1 1195 0.0 T 28-03-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Gene3D G3DSA:3.10.196.10 956 1080 1.5E-45 T 28-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Gene3D G3DSA:3.10.196.10 1081 1227 1.7E-64 T 28-03-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Gene3D G3DSA:3.20.20.20 345 644 8.3E-75 T 28-03-2018 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 SUPERFAMILY SSF51717 356 630 1.57E-88 T 28-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Pfam PF02310 B12 binding domain 748 840 1.9E-18 T 28-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Pfam PF02607 B12 binding domain 660 733 6.1E-24 T 28-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 Gene3D G3DSA:1.10.1240.10 652 731 7.3E-37 T 28-03-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS03800 4ff3afc666e20f9970d128e066610185 1227 SUPERFAMILY SSF52242 742 894 1.44E-48 T 28-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 SUPERFAMILY SSF54292 217 321 1.04E-23 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 Gene3D G3DSA:3.40.50.80 108 214 1.5E-21 T 28-03-2018 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 242 312 1.1E-12 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 Gene3D G3DSA:3.10.20.30 215 321 6.3E-20 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 270 278 - T 28-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 Pfam PF00970 Oxidoreductase FAD-binding domain 9 103 1.5E-6 T 28-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 Gene3D G3DSA:2.40.30.10 4 107 6.3E-17 T 28-03-2018 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 SUPERFAMILY SSF63380 3 104 3.05E-24 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 116 135 1.6E-29 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 31 41 1.6E-29 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 141 150 1.6E-29 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 80 94 1.6E-29 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 94 108 1.6E-29 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 PRINTS PR00409 Phthalate dioxygenase reductase family signature 193 201 1.6E-29 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS15455 7cd60c9df8f907d1f97499eb24c3db34 321 SUPERFAMILY SSF52343 106 223 1.01E-24 T 28-03-2018 AM348_RS00700 445b7fd624961af132430a3a0defc5c6 198 SUPERFAMILY SSF53098 3 195 1.24E-69 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS00700 445b7fd624961af132430a3a0defc5c6 198 Gene3D G3DSA:3.30.420.10 3 198 1.5E-68 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS00700 445b7fd624961af132430a3a0defc5c6 198 Pfam PF01351 Ribonuclease HII 13 188 4.7E-38 T 28-03-2018 IPR024567 Ribonuclease HII/HIII domain AM348_RS00700 445b7fd624961af132430a3a0defc5c6 198 Hamap MF_00052_B Ribonuclease HII [rnhB]. 11 190 39.122 T 28-03-2018 IPR022898 Ribonuclease HII GO:0004523 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 202 328 3.8E-49 T 28-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 Gene3D G3DSA:3.30.1400.10 200 332 4.8E-55 T 28-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 SUPERFAMILY SSF64383 200 334 4.84E-48 T 28-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 331 24.983 T 28-03-2018 IPR011919 Cell division protein ZipA GO:0007049|GO:0016021|GO:0090529 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 329 1.5E-103 T 28-03-2018 IPR011919 Cell division protein ZipA GO:0007049|GO:0016021|GO:0090529 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 SMART SM00771 199 329 1.4E-73 T 28-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM348_RS12025 ecd49b795df1b524fe547868184d55af 337 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 201 337 1.0E-70 T 28-03-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 Pfam PF02378 Phosphotransferase system, EIIC 232 495 3.7E-17 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 Gene3D G3DSA:3.40.50.2300 104 202 1.3E-37 T 28-03-2018 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 212 551 3.2E-150 T 28-03-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 106 189 1.7E-39 T 28-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 Gene3D G3DSA:3.40.50.2300 36 84 0.22 T 28-03-2018 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 Gene3D G3DSA:3.40.50.2300 2 35 0.4 T 28-03-2018 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 SUPERFAMILY SSF52794 4 88 8.02E-10 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 107 195 7.0E-19 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS13125 4c15d39aa4573134e6223bbaa167e291 562 SUPERFAMILY SSF52794 104 205 5.41E-36 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS13710 66358b33c65a946e1942bbe28ad604d5 405 Gene3D G3DSA:3.40.50.2000 84 398 1.4E-14 T 28-03-2018 AM348_RS13710 66358b33c65a946e1942bbe28ad604d5 405 SUPERFAMILY SSF53756 10 403 3.4E-24 T 28-03-2018 AM348_RS13710 66358b33c65a946e1942bbe28ad604d5 405 Pfam PF13692 Glycosyl transferases group 1 256 357 4.2E-6 T 28-03-2018 AM348_RS13710 66358b33c65a946e1942bbe28ad604d5 405 Pfam PF13439 Glycosyltransferase Family 4 70 224 2.9E-8 T 28-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM348_RS13710 66358b33c65a946e1942bbe28ad604d5 405 TIGRFAM TIGR04015 WcaC: colanic acid biosynthesis glycosyltransferase WcaC 1 405 4.2E-252 T 28-03-2018 IPR023916 Colanic acid biosynthesis, glycosyl transferase, WcaC AM348_RS05850 178a9a4c833df87bc89793b68815d46d 151 Gene3D G3DSA:2.70.40.10 116 150 3.8E-16 T 28-03-2018 AM348_RS05850 178a9a4c833df87bc89793b68815d46d 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 150 1.2E-50 T 28-03-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|Reactome: R-HSA-499943 AM348_RS05850 178a9a4c833df87bc89793b68815d46d 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 34.409 T 28-03-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|Reactome: R-HSA-499943 AM348_RS05850 178a9a4c833df87bc89793b68815d46d 151 Gene3D G3DSA:2.70.40.10 2 115 1.8E-40 T 28-03-2018 AM348_RS05850 178a9a4c833df87bc89793b68815d46d 151 Pfam PF00692 dUTPase 16 149 2.1E-44 T 28-03-2018 IPR029054 dUTPase-like AM348_RS05850 178a9a4c833df87bc89793b68815d46d 151 SUPERFAMILY SSF51283 1 150 4.97E-55 T 28-03-2018 IPR029054 dUTPase-like AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.1E-13 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 1.1E-13 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.1E-13 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00097 Anthranilate synthase component II signature 47 56 2.9E-37 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00097 Anthranilate synthase component II signature 119 131 2.9E-37 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00097 Anthranilate synthase component II signature 164 177 2.9E-37 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00097 Anthranilate synthase component II signature 2 16 2.9E-37 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00097 Anthranilate synthase component II signature 74 85 2.9E-37 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00097 Anthranilate synthase component II signature 99 107 2.9E-37 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 SUPERFAMILY SSF52317 1 186 2.04E-57 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 187 5.0E-96 T 28-03-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.1E-5 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.1E-5 T 28-03-2018 AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 Gene3D G3DSA:3.40.50.880 1 187 2.0E-59 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS07170 27cbb928f8d25817c34e2cf5c6a0d255 187 Pfam PF00117 Glutamine amidotransferase class-I 3 185 2.2E-57 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 Gene3D G3DSA:2.20.25.10 1 39 2.2E-16 T 28-03-2018 AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 SUPERFAMILY SSF82057 39 110 1.51E-29 T 28-03-2018 AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 Pfam PF08274 PhnA Zinc-Ribbon 2 30 1.9E-16 T 28-03-2018 IPR013987 PhnA protein, N-terminal AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 SUPERFAMILY SSF57783 1 36 2.04E-14 T 28-03-2018 AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 Pfam PF03831 PhnA domain 44 111 1.0E-34 T 28-03-2018 IPR013988 PhnA protein, C-terminal AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 111 6.0E-62 T 28-03-2018 IPR004624 PhnA protein AM348_RS03235 07d84f4418f0568b01ff628b7f47270a 111 Gene3D G3DSA:2.30.30.40 43 110 1.5E-37 T 28-03-2018 AM348_RS12160 8adaed26c7c19e39c53cd3d2f2e3eb6a 321 Pfam PF02685 Glucokinase 6 315 7.1E-123 T 28-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AM348_RS12160 8adaed26c7c19e39c53cd3d2f2e3eb6a 321 Hamap MF_00524 Glucokinase [glk]. 4 316 35.744 T 28-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AM348_RS12160 8adaed26c7c19e39c53cd3d2f2e3eb6a 321 Gene3D G3DSA:3.30.420.40 1 108 6.5E-15 T 28-03-2018 AM348_RS12160 8adaed26c7c19e39c53cd3d2f2e3eb6a 321 SUPERFAMILY SSF53067 4 318 5.1E-63 T 28-03-2018 AM348_RS12160 8adaed26c7c19e39c53cd3d2f2e3eb6a 321 TIGRFAM TIGR00749 glk: glucokinase 6 310 8.5E-152 T 28-03-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 AM348_RS12160 8adaed26c7c19e39c53cd3d2f2e3eb6a 321 Gene3D G3DSA:3.40.367.20 109 299 6.7E-29 T 28-03-2018 AM348_RS05380 19cfa3c86fe31ca1d3675be1c685017a 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 28-03-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS05380 19cfa3c86fe31ca1d3675be1c685017a 46 Pfam PF00468 Ribosomal protein L34 1 44 1.7E-23 T 28-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05380 19cfa3c86fe31ca1d3675be1c685017a 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.718 T 28-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05380 19cfa3c86fe31ca1d3675be1c685017a 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.1E-25 T 28-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05380 19cfa3c86fe31ca1d3675be1c685017a 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 3.0E-14 T 28-03-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 SMART SM00387 375 481 3.4E-22 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 Gene3D G3DSA:3.30.565.10 336 486 5.8E-28 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 471 1.6E-11 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 SUPERFAMILY SSF55874 337 477 1.28E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 SUPERFAMILY SSF47384 250 319 6.28E-5 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 Pfam PF08918 PhoQ Sensor 10 188 3.3E-85 T 28-03-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 4.2E-7 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS19405 d769e4739d5fe8d8852ceccf45e8e821 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 4.2E-7 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 SMART SM00448 4 115 3.4E-36 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 SMART SM00862 150 226 6.8E-20 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 SUPERFAMILY SSF52172 2 128 1.27E-37 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 Pfam PF00072 Response regulator receiver domain 6 115 1.4E-25 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 SUPERFAMILY SSF46894 126 226 1.9E-23 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 Gene3D G3DSA:3.40.50.2300 1 124 2.1E-32 T 28-03-2018 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 1.2E-21 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS01710 643bea577c6dbe000b1cbb770e0437b3 229 Gene3D G3DSA:1.10.10.10 125 228 8.3E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 2.2E-40 T 28-03-2018 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 SMART SM00480 17 362 6.0E-173 T 28-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 1.3E-40 T 28-03-2018 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 PIRSF PIRSF000804 1 366 2.5E-116 T 28-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 1.1E-113 T 28-03-2018 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 SUPERFAMILY SSF55979 245 366 2.15E-37 T 28-03-2018 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 Gene3D G3DSA:3.10.150.10 248 366 1.4E-24 T 28-03-2018 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 SUPERFAMILY SSF55979 125 244 1.03E-29 T 28-03-2018 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 1.3E-44 T 28-03-2018 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 Gene3D G3DSA:3.10.150.10 1 123 6.3E-28 T 28-03-2018 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 SUPERFAMILY SSF55979 1 121 4.46E-26 T 28-03-2018 AM348_RS05395 1464f907e44d52bc195d669af252e7fe 366 Gene3D G3DSA:3.10.150.10 124 247 3.3E-33 T 28-03-2018 AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 Pfam PF12951 Passenger-associated-transport-repeat 870 897 5.9E-8 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 Gene3D G3DSA:2.160.20.20 62 370 2.8E-4 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 Gene3D G3DSA:2.160.20.20 711 1075 1.4E-41 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 SUPERFAMILY SSF51126 787 1070 1.48E-31 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 22 2.9E-8 T 28-03-2018 IPR024973 ESPR domain AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 SUPERFAMILY SSF103515 1141 1445 3.27E-45 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 968 1445 1.5E-109 T 28-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 SUPERFAMILY SSF51126 386 763 2.1E-11 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 Pfam PF03797 Autotransporter beta-domain 1172 1423 9.9E-46 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 869 897 2.4E-9 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 SMART SM00869 1169 1434 1.7E-40 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS22325 6cf10a312cb3a58017fcaecd44b0cf8a 1445 Gene3D G3DSA:2.40.128.130 1134 1445 7.6E-48 T 28-03-2018 AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 SUPERFAMILY SSF51735 5 252 9.35E-80 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.9E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 8.9E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.9E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 Pfam PF00106 short chain dehydrogenase 10 203 4.5E-62 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.8E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.8E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.8E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.8E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.8E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.8E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 Gene3D G3DSA:3.40.50.10090 2 48 3.5E-9 T 28-03-2018 AM348_RS01320 c86fab0ce1cc47b20a4928307ccdc759 254 Gene3D G3DSA:3.40.50.720 49 254 1.1E-61 T 28-03-2018 AM348_RS12510 6152329fe9d7ef1235b03ac4ef0c6eb8 211 SUPERFAMILY SSF47616 78 204 2.73E-36 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS12510 6152329fe9d7ef1235b03ac4ef0c6eb8 211 SUPERFAMILY SSF52833 2 84 4.94E-19 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS12510 6152329fe9d7ef1235b03ac4ef0c6eb8 211 Gene3D G3DSA:1.20.1050.10 96 210 3.4E-32 T 28-03-2018 AM348_RS12510 6152329fe9d7ef1235b03ac4ef0c6eb8 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 83 6.4E-11 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS12510 6152329fe9d7ef1235b03ac4ef0c6eb8 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 197 2.3E-11 T 28-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM348_RS12510 6152329fe9d7ef1235b03ac4ef0c6eb8 211 Gene3D G3DSA:3.40.30.10 1 95 6.2E-24 T 28-03-2018 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 34 214 1.9E-14 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 SUPERFAMILY SSF52540 24 252 3.8E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 Gene3D G3DSA:3.40.50.300 22 238 1.6E-39 T 28-03-2018 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 28 434 3.0E-211 T 28-03-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 PRINTS PR00315 GTP-binding elongation factor signature 163 172 7.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 PRINTS PR00315 GTP-binding elongation factor signature 126 137 7.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 PRINTS PR00315 GTP-binding elongation factor signature 110 120 7.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 PRINTS PR00315 GTP-binding elongation factor signature 29 42 7.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 PRINTS PR00315 GTP-binding elongation factor signature 90 98 7.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 83 98 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 Gene3D G3DSA:2.40.30.10 332 436 8.5E-19 T 28-03-2018 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 19 475 53.819 T 28-03-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 Gene3D G3DSA:2.40.30.10 239 328 3.1E-22 T 28-03-2018 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 SUPERFAMILY SSF50447 244 329 7.29E-24 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 Pfam PF00009 Elongation factor Tu GTP binding domain 27 232 7.0E-44 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS10095 c4d0319254ec72c0a3d1ac91814a17f9 475 SUPERFAMILY SSF50465 336 435 8.15E-30 T 28-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 Gene3D G3DSA:3.40.1410.10 77 223 2.0E-10 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 SMART SM00866 90 228 0.0079 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 SMART SM00345 10 69 3.0E-13 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 SUPERFAMILY SSF64288 59 232 4.19E-18 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 Gene3D G3DSA:1.10.10.10 1 71 8.9E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 Pfam PF07702 UTRA domain 90 227 9.4E-13 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 SUPERFAMILY SSF46785 5 73 3.74E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04400 89bf94c42c9a5b0b0197ea9df6099e16 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 69 2.0E-14 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Gene3D G3DSA:1.10.8.60 154 243 1.2E-19 T 28-03-2018 AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Gene3D G3DSA:1.20.272.10 252 346 4.8E-37 T 28-03-2018 AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Gene3D G3DSA:3.40.50.300 2 153 1.7E-31 T 28-03-2018 AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Gene3D G3DSA:1.10.3710.10 348 447 8.4E-35 T 28-03-2018 AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 268 434 3.2E-66 T 28-03-2018 IPR021886 MgsA AAA+ ATPase C-terminal AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 SUPERFAMILY SSF48019 252 434 2.21E-72 T 28-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 SMART SM00382 49 165 2.6E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Pfam PF16193 AAA C-terminal domain 188 267 1.4E-22 T 28-03-2018 IPR032423 AAA C-terminal domain AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 SUPERFAMILY SSF52540 6 236 2.43E-47 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20835 584a9f3e916944d4f207e13c35b9d77c 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 159 2.6E-17 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS17295 decdec7e44d614d070feb9dc7993e4a4 75 Pfam PF01361 Tautomerase enzyme 2 53 4.7E-15 T 28-03-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 AM348_RS17295 decdec7e44d614d070feb9dc7993e4a4 75 Hamap MF_00718 Tautomerase PptA [pptA]. 1 75 29.067 T 28-03-2018 IPR017284 Tautomerase PptA GO:0005737|GO:0016862 AM348_RS17295 decdec7e44d614d070feb9dc7993e4a4 75 PIRSF PIRSF037799 1 75 2.3E-29 T 28-03-2018 IPR017284 Tautomerase PptA GO:0005737|GO:0016862 AM348_RS17295 decdec7e44d614d070feb9dc7993e4a4 75 SUPERFAMILY SSF55331 2 74 5.95E-18 T 28-03-2018 IPR014347 Tautomerase/MIF superfamily AM348_RS17295 decdec7e44d614d070feb9dc7993e4a4 75 Gene3D G3DSA:3.30.429.10 2 65 6.7E-19 T 28-03-2018 AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 Gene3D G3DSA:3.30.300.70 3 83 4.4E-27 T 28-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 Pfam PF02576 RimP N-terminal domain 16 86 5.6E-28 T 28-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 Pfam PF17384 RimP C-terminal SH3 domain 89 154 1.3E-22 T 28-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 SUPERFAMILY SSF75420 6 86 8.11E-25 T 28-03-2018 IPR028989 Ribosome maturation factor RimP, N-terminal AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 SUPERFAMILY SSF74942 87 154 5.62E-17 T 28-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 10 154 24.393 T 28-03-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 AM348_RS08115 7e1a2ae24545ec3a8f3012cc0d01ae5f 154 Gene3D G3DSA:2.30.30.180 91 151 9.2E-18 T 28-03-2018 IPR028998 Ribosome maturation factor RimP, C-terminal AM348_RS12295 b99f94c036678eb4d358b436d6d65319 82 Gene3D G3DSA:2.40.10.180 3 80 2.3E-4 T 28-03-2018 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 1.4E-61 T 28-03-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 9.0E-38 T 28-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 28-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 4.5E-26 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 SUPERFAMILY SSF89360 1 96 2.88E-32 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 Gene3D G3DSA:2.60.300.12 2 107 1.1E-37 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS11515 8eb0ffd4ee060c8edb11690b0946a09f 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 45.131 T 28-03-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 Pfam PF00005 ABC transporter 293 436 9.1E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 Pfam PF00005 ABC transporter 28 175 4.7E-25 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 SMART SM00382 37 225 0.036 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06550 439d96f0512a427720493d7a28e80316 915 SMART SM00382 301 486 2.0E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06550 439d96f0512a427720493d7a28e80316 915 SUPERFAMILY SSF52540 14 239 4.64E-55 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06550 439d96f0512a427720493d7a28e80316 915 Pfam PF12698 ABC-2 family transporter protein 573 907 2.3E-37 T 28-03-2018 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 SUPERFAMILY SSF52540 276 498 7.99E-62 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06550 439d96f0512a427720493d7a28e80316 915 Gene3D G3DSA:3.40.1710.10 581 734 6.8E-23 T 28-03-2018 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 Gene3D G3DSA:3.40.50.300 274 558 2.5E-64 T 28-03-2018 AM348_RS06550 439d96f0512a427720493d7a28e80316 915 Gene3D G3DSA:3.40.50.300 9 273 4.8E-57 T 28-03-2018 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Gene3D G3DSA:3.40.50.980 184 334 5.6E-35 T 28-03-2018 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Hamap MF_01524 Probable crotonobetaine/carnitine-CoA ligase [caiC]. 1 517 80.248 T 28-03-2018 IPR023456 Crotonobetaine/carnitine-CoA ligase CaiC GO:0009437|GO:0016878|GO:0051108|GO:0051109 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Gene3D G3DSA:2.30.38.10 335 419 1.4E-23 T 28-03-2018 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Pfam PF00501 AMP-binding enzyme 17 426 1.5E-91 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 SUPERFAMILY SSF56801 8 516 2.88E-134 T 28-03-2018 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Gene3D G3DSA:3.30.300.30 421 517 1.1E-20 T 28-03-2018 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Gene3D G3DSA:3.40.50.980 6 183 9.0E-41 T 28-03-2018 AM348_RS01510 1b8c62d60aebb04bb2880532a90e7ff2 517 Pfam PF13193 AMP-binding enzyme C-terminal domain 435 510 1.5E-13 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS00745 a09d027883290474a278fc35bb6b495a 252 SUPERFAMILY SSF64005 18 239 2.35E-87 T 28-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM348_RS00745 a09d027883290474a278fc35bb6b495a 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 23 243 9.9E-81 T 28-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM348_RS00745 a09d027883290474a278fc35bb6b495a 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 16 244 39.804 T 28-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM348_RS00745 a09d027883290474a278fc35bb6b495a 252 Gene3D G3DSA:3.40.1180.10 8 247 1.5E-90 T 28-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM348_RS00745 a09d027883290474a278fc35bb6b495a 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 189 206 - T 28-03-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199 AM348_RS00745 a09d027883290474a278fc35bb6b495a 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 18 243 4.4E-105 T 28-03-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 AM348_RS21950 65287951a6c1af937eb908f80e32c42f 266 Gene3D G3DSA:3.40.50.1360 1 266 2.0E-88 T 28-03-2018 AM348_RS21950 65287951a6c1af937eb908f80e32c42f 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 230 6.3E-22 T 28-03-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 AM348_RS21950 65287951a6c1af937eb908f80e32c42f 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 5.9E-144 T 28-03-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 AM348_RS21950 65287951a6c1af937eb908f80e32c42f 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 28-03-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 AM348_RS21950 65287951a6c1af937eb908f80e32c42f 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 41.303 T 28-03-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 AM348_RS21950 65287951a6c1af937eb908f80e32c42f 266 SUPERFAMILY SSF100950 1 263 3.39E-106 T 28-03-2018 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 3.2E-30 T 28-03-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 28-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 5.6E-97 T 28-03-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 SUPERFAMILY SSF54292 4 106 7.56E-29 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 SUPERFAMILY SSF46548 107 229 6.98E-31 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 Gene3D G3DSA:1.10.1060.10 107 242 1.6E-26 T 28-03-2018 AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 Gene3D G3DSA:3.10.20.30 1 106 1.1E-28 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS02970 c4332aa763618630eec3ebff235e205c 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 2.9E-11 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS19840 ef30438bd8ea816defe63808a81e9e12 57 SUPERFAMILY SSF57829 2 55 2.01E-18 T 28-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AM348_RS19840 ef30438bd8ea816defe63808a81e9e12 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.9E-18 T 28-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS19840 ef30438bd8ea816defe63808a81e9e12 57 Pfam PF01783 Ribosomal L32p protein family 2 57 5.0E-19 T 28-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS19840 ef30438bd8ea816defe63808a81e9e12 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 16.307 T 28-03-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 Gene3D G3DSA:3.30.43.10 40 146 3.6E-15 T 28-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 Gene3D G3DSA:3.30.465.10 148 294 1.9E-31 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 Gene3D G3DSA:1.10.45.10 467 505 4.8E-12 T 28-03-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 Pfam PF02913 FAD linked oxidases, C-terminal domain 268 505 3.1E-27 T 28-03-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 Pfam PF01565 FAD binding domain 94 231 1.1E-32 T 28-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 SUPERFAMILY SSF56176 59 268 4.67E-49 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS06525 2c0c8f8355f05575c9597c0ad79499e7 519 SUPERFAMILY SSF55103 246 507 1.83E-32 T 28-03-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 SMART SM00354 1 70 6.9E-26 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 47 3.1E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 SUPERFAMILY SSF53822 60 326 4.21E-70 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 SUPERFAMILY SSF47413 2 58 1.22E-17 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 Gene3D G3DSA:3.40.50.2300 54 172 6.6E-29 T 28-03-2018 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 Gene3D G3DSA:1.10.260.40 1 53 5.2E-22 T 28-03-2018 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 Pfam PF13377 Periplasmic binding protein-like domain 167 326 1.3E-39 T 28-03-2018 AM348_RS22510 70578dc2c548a67f8d49a5f406134119 326 Gene3D G3DSA:3.40.50.2300 173 304 6.6E-43 T 28-03-2018 AM348_RS14105 594a09858c9c52e1d6b602fe5587c480 189 Gene3D G3DSA:3.40.50.150 2 188 1.7E-24 T 28-03-2018 AM348_RS14105 594a09858c9c52e1d6b602fe5587c480 189 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 13 132 1.8E-41 T 28-03-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377 AM348_RS14105 594a09858c9c52e1d6b602fe5587c480 189 Pfam PF05175 Methyltransferase small domain 22 103 1.4E-7 T 28-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM348_RS14105 594a09858c9c52e1d6b602fe5587c480 189 SUPERFAMILY SSF53335 3 151 8.2E-24 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS17370 936870c08aba39fa497e19c484cc966d 293 SUPERFAMILY SSF103481 191 290 2.09E-7 T 28-03-2018 AM348_RS17370 936870c08aba39fa497e19c484cc966d 293 Pfam PF00892 EamA-like transporter family 158 285 7.2E-8 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS17370 936870c08aba39fa497e19c484cc966d 293 Pfam PF00892 EamA-like transporter family 6 137 4.4E-7 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS17370 936870c08aba39fa497e19c484cc966d 293 SUPERFAMILY SSF103481 50 140 5.23E-5 T 28-03-2018 AM348_RS07055 650f91b42c1a88a8f5b80b347e684105 260 Gene3D G3DSA:3.30.420.40 6 158 1.1E-4 T 28-03-2018 AM348_RS07055 650f91b42c1a88a8f5b80b347e684105 260 SUPERFAMILY SSF53067 33 164 7.38E-6 T 28-03-2018 AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 467 58.517 T 28-03-2018 IPR026589 Cell division protein FtsP GO:0043093 AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Pfam PF00394 Multicopper oxidase 219 287 3.5E-4 T 28-03-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 SUPERFAMILY SSF49503 3 165 2.04E-25 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Gene3D G3DSA:2.60.40.420 168 297 4.9E-26 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Gene3D G3DSA:2.60.40.420 346 470 1.0E-14 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Gene3D G3DSA:2.60.40.420 28 164 2.3E-22 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Pfam PF07731 Multicopper oxidase 360 468 1.3E-12 T 28-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 SUPERFAMILY SSF49503 319 466 7.03E-18 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 SUPERFAMILY SSF49503 173 311 1.27E-30 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08880 d48eb64d65ae4d794249606d0e8b8183 470 Pfam PF07732 Multicopper oxidase 52 166 9.3E-27 T 28-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 211 224 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 273 288 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Pfam PF00158 Sigma-54 interaction domain 187 353 1.8E-66 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 400 409 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Gene3D G3DSA:3.40.50.300 182 359 1.3E-25 T 28-03-2018 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 SMART SM00382 207 350 6.7E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 SMART SM00065 20 167 1.9E-18 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 SUPERFAMILY SSF55781 22 170 1.64E-17 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Hamap MF_01314 Anaerobic nitric oxide reductase transcription regulator NorR [norR]. 1 505 62.888 T 28-03-2018 IPR023944 Anaerobic nitric oxide reductase transcription regulator GO:0003700|GO:0006355 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Gene3D G3DSA:1.10.8.60 360 432 1.2E-20 T 28-03-2018 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Gene3D G3DSA:3.30.450.40 5 171 1.1E-17 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 SUPERFAMILY SSF46689 452 504 5.82E-6 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Pfam PF01590 GAF domain 23 154 1.4E-9 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 SUPERFAMILY SSF52540 187 422 1.25E-66 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10445 4207a39e072f016a97193e205b2310ac 506 Gene3D G3DSA:1.10.10.60 433 506 1.5E-8 T 28-03-2018 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 SUPERFAMILY SSF53738 2 181 4.71E-49 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 9.9E-198 T 28-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 47.754 T 28-03-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 SUPERFAMILY SSF53738 258 365 1.26E-31 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 SUPERFAMILY SSF55957 357 444 1.01E-21 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Gene3D G3DSA:3.40.120.10 269 373 9.7E-30 T 28-03-2018 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Gene3D G3DSA:3.40.120.10 155 268 2.3E-33 T 28-03-2018 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 366 5.1E-33 T 28-03-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 6.1E-20 T 28-03-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 SUPERFAMILY SSF53738 156 256 1.41E-29 T 28-03-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Gene3D G3DSA:3.30.310.50 374 445 7.9E-18 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 5.0E-14 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.0E-14 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 5.0E-14 T 28-03-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 442 1.2E-14 T 28-03-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 2.1E-45 T 28-03-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 Gene3D G3DSA:3.40.120.10 3 154 1.4E-48 T 28-03-2018 AM348_RS08075 9502317ef759c06f59b5fed003c7f72a 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 28-03-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 AM348_RS23450 5ab7d90037d425c89a4b5d1472729d46 332 Gene3D G3DSA:2.60.40.1090 183 332 2.3E-27 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS23450 5ab7d90037d425c89a4b5d1472729d46 332 Pfam PF00419 Fimbrial protein 193 331 2.1E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS23450 5ab7d90037d425c89a4b5d1472729d46 332 SUPERFAMILY SSF49401 198 331 2.63E-23 T 28-03-2018 IPR008966 Adhesion domain AM348_RS04415 00a3c9feb0d1a9bb6190f1353d6c34d9 327 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 318 41.107 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS04415 00a3c9feb0d1a9bb6190f1353d6c34d9 327 TIGRFAM TIGR00793 kdgT: 2-keto-3-deoxygluconate transporter 1 314 1.9E-184 T 28-03-2018 IPR018395 2-keto-3-deoxygluconate permease, subgroup GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS04415 00a3c9feb0d1a9bb6190f1353d6c34d9 327 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 14 327 2.0E-137 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS04415 00a3c9feb0d1a9bb6190f1353d6c34d9 327 Gene3D G3DSA:1.20.1640.10 250 321 4.0E-5 T 28-03-2018 AM348_RS04415 00a3c9feb0d1a9bb6190f1353d6c34d9 327 Pfam PF03812 2-keto-3-deoxygluconate permease 3 312 3.5E-116 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 Pfam PF10415 Fumarase C C-terminus 408 461 1.7E-23 T 28-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 Gene3D G3DSA:1.10.275.10 2 138 1.9E-60 T 28-03-2018 IPR024083 Fumarase/histidase, N-terminal AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 91.051 T 28-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 SUPERFAMILY SSF48557 5 457 1.37E-156 T 28-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 Gene3D G3DSA:1.20.200.10 139 417 2.4E-87 T 28-03-2018 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 461 8.2E-250 T 28-03-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 3.6E-34 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 3.6E-34 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 3.6E-34 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 3.6E-34 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 Gene3D G3DSA:1.10.40.30 418 462 7.1E-24 T 28-03-2018 AM348_RS18040 d78b9b4e944f2d6afaa3374d3aa919bc 467 Pfam PF00206 Lyase 12 342 1.5E-122 T 28-03-2018 IPR022761 Fumarate lyase, N-terminal AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.805 T 28-03-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 PIRSF PIRSF006621 1 321 6.8E-101 T 28-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 SUPERFAMILY SSF51395 10 319 1.34E-87 T 28-03-2018 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 320 1.9E-141 T 28-03-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 Gene3D G3DSA:3.20.20.70 8 240 6.1E-56 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 Gene3D G3DSA:1.10.1200.80 252 321 2.6E-21 T 28-03-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 1.1E-117 T 28-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS07650 1ca42acc7a0fa1bb0568a47e4a5cf0c1 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 28-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 PRINTS PR00369 Flavodoxin signature 84 94 2.6E-6 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 PRINTS PR00369 Flavodoxin signature 53 64 2.6E-6 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 PRINTS PR00369 Flavodoxin signature 108 127 2.6E-6 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 Gene3D G3DSA:3.40.50.360 1 68 2.9E-10 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 Gene3D G3DSA:3.40.50.360 84 149 3.0E-14 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 Gene3D G3DSA:1.20.5.810 69 83 0.0013 T 28-03-2018 AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 Pfam PF00258 Flavodoxin 6 139 3.6E-24 T 28-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM348_RS09955 9fb9134f2afabd06632da3a9ff4c3471 149 SUPERFAMILY SSF52218 1 148 3.84E-39 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 Gene3D G3DSA:1.10.357.10 47 62 0.012 T 28-03-2018 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 Gene3D G3DSA:1.10.357.10 63 224 6.9E-39 T 28-03-2018 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 8.0E-5 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 8.0E-5 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 Gene3D G3DSA:1.10.10.60 1 46 5.3E-16 T 28-03-2018 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 SUPERFAMILY SSF48498 91 218 6.67E-36 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 Pfam PF09209 Domain of unknown function (DUF1956) 96 218 5.2E-36 T 28-03-2018 IPR015292 Transcription regulator YbiH, C-terminal AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 SUPERFAMILY SSF46689 3 82 3.85E-19 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 4.9E-13 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS21255 3a6a57763b78240b17e69898b9d1fb25 225 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 58 - T 28-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM348_RS03065 c1869bf6ee8d13559b8eefe7fdf551e7 433 PIRSF PIRSF004539 1 433 3.9E-179 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS03065 c1869bf6ee8d13559b8eefe7fdf551e7 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 4.5E-205 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS03065 c1869bf6ee8d13559b8eefe7fdf551e7 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 2.8E-144 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS08285 53afea0a3500bd616cbf2d2c6336268e 256 Gene3D G3DSA:3.20.20.60 3 255 5.5E-45 T 28-03-2018 AM348_RS08285 53afea0a3500bd616cbf2d2c6336268e 256 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 20 245 3.3E-62 T 28-03-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AM348_RS08285 53afea0a3500bd616cbf2d2c6336268e 256 Hamap MF_01291 5-keto-4-deoxy-D-glucarate aldolase [garL]. 1 256 68.878 T 28-03-2018 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20 AM348_RS08285 53afea0a3500bd616cbf2d2c6336268e 256 TIGRFAM TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase 8 256 1.4E-145 T 28-03-2018 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20 AM348_RS08285 53afea0a3500bd616cbf2d2c6336268e 256 SUPERFAMILY SSF51621 3 255 3.14E-83 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS20155 551d1aa10ff2b66ffe38c0f42daf71f0 277 Pfam PF03239 Iron permease FTR1 family 1 266 4.2E-74 T 28-03-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 AM348_RS20155 551d1aa10ff2b66ffe38c0f42daf71f0 277 Gene3D G3DSA:1.20.1250.20 1 107 3.4E-4 T 28-03-2018 AM348_RS20155 551d1aa10ff2b66ffe38c0f42daf71f0 277 SUPERFAMILY SSF103473 5 236 5.49E-6 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS20155 551d1aa10ff2b66ffe38c0f42daf71f0 277 TIGRFAM TIGR00145 TIGR00145: FTR1 family protein 1 272 2.4E-104 T 28-03-2018 IPR005217 Iron permease FTR1-like GO:0005381|GO:0005886|GO:0006827|GO:0033573 AM348_RS19920 b6a9180af44fa89675f8e3fbc4e60bff 232 Pfam PF13860 FlgD Ig-like domain 119 189 1.2E-23 T 28-03-2018 IPR025965 FlgD Ig-like domain AM348_RS19920 b6a9180af44fa89675f8e3fbc4e60bff 232 Pfam PF13861 FlgD Tudor-like domain 88 229 1.0E-15 T 28-03-2018 IPR025963 FlgD Tudor-like domain AM348_RS19920 b6a9180af44fa89675f8e3fbc4e60bff 232 Pfam PF03963 Flagellar hook capping protein - N-terminal region 12 80 1.4E-22 T 28-03-2018 IPR005648 Flagellar hook capping protein AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 Pfam PF00072 Response regulator receiver domain 6 113 8.5E-27 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 SUPERFAMILY SSF46894 136 234 7.65E-22 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 Gene3D G3DSA:3.40.50.2300 1 136 9.9E-32 T 28-03-2018 AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 SMART SM00862 156 232 3.7E-15 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 SMART SM00448 4 114 6.3E-38 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 Gene3D G3DSA:1.10.10.10 137 238 1.9E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 SUPERFAMILY SSF52172 2 126 2.85E-36 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS01695 c309dbeeec353a760a85ac406ec782f5 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 2.5E-18 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 Pfam PF00318 Ribosomal protein S2 9 224 8.7E-95 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.43 T 28-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 Gene3D G3DSA:3.40.50.10490 5 241 6.4E-97 T 28-03-2018 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 1.1E-108 T 28-03-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 28-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 8.8E-38 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 8.8E-38 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 8.8E-38 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 8.8E-38 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 8.8E-38 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 8.8E-38 T 28-03-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 28-03-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 AM348_RS00775 dce9fc986912f7b2b2a5609736d1ba33 241 SUPERFAMILY SSF52313 6 235 1.29E-96 T 28-03-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain AM348_RS23490 4e31d5414272995df0cf087e11e3eed7 225 Pfam PF07302 AroM protein 5 224 4.4E-67 T 28-03-2018 IPR010843 Uncharacterised protein family AroM AM348_RS23490 4e31d5414272995df0cf087e11e3eed7 225 Gene3D G3DSA:3.40.50.1860 136 224 5.7E-5 T 28-03-2018 AM348_RS23490 4e31d5414272995df0cf087e11e3eed7 225 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 5 223 5.0E-95 T 28-03-2018 IPR010843 Uncharacterised protein family AroM AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Pfam PF00391 PEP-utilising enzyme, mobile domain 400 468 2.2E-15 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Gene3D G3DSA:3.50.30.10 389 476 3.6E-16 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 168 175 - T 28-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Pfam PF00381 PTS HPr component phosphorylation site 161 236 2.1E-16 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 SUPERFAMILY SSF53062 1 128 2.09E-30 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Gene3D G3DSA:3.40.50.510 1 146 1.1E-32 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 159 235 1.1E-14 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Pfam PF03610 PTS system fructose IIA component 4 120 1.3E-25 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 PRINTS PR00107 Phosphocarrier protein signature 208 225 4.4E-5 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 PRINTS PR00107 Phosphocarrier protein signature 193 208 4.4E-5 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 PRINTS PR00107 Phosphocarrier protein signature 168 184 4.4E-5 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 SUPERFAMILY SSF47831 273 389 4.58E-29 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Gene3D G3DSA:1.10.274.10 273 388 5.6E-28 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Pfam PF05524 PEP-utilising enzyme, N-terminal 261 372 2.0E-20 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 Gene3D G3DSA:3.30.1340.10 157 242 2.1E-19 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 127 5.8E-40 T 28-03-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 SUPERFAMILY SSF55594 159 242 6.02E-19 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS15610 caec152902eaa46f69dc5a881b0c1f82 476 SUPERFAMILY SSF52009 372 473 2.09E-20 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 Pfam PF02780 Transketolase, C-terminal domain 540 655 8.0E-19 T 28-03-2018 IPR033248 Transketolase, C-terminal domain AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 SUPERFAMILY SSF52518 5 331 5.09E-121 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 3.0E-172 T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 28-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 28-03-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 SUPERFAMILY SSF52922 533 663 3.4E-44 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 6.2E-44 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 Gene3D G3DSA:3.40.50.920 541 663 3.2E-32 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 Gene3D G3DSA:3.40.50.970 1 363 1.1E-128 T 28-03-2018 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 SUPERFAMILY SSF52518 336 526 3.53E-67 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 SMART SM00861 355 525 6.0E-66 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 Gene3D G3DSA:3.40.50.970 364 540 1.3E-41 T 28-03-2018 AM348_RS09315 f177cf6af9d751d2d8953ba024c17147 663 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 28-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 SMART SM00283 269 516 4.8E-97 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 Pfam PF00672 HAMP domain 217 263 2.5E-11 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 SUPERFAMILY SSF47170 25 181 9.42E-50 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.3E-91 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 Gene3D G3DSA:1.10.287.950 328 520 4.3E-48 T 28-03-2018 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 Gene3D G3DSA:1.10.287.1060 236 327 9.5E-4 T 28-03-2018 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 SUPERFAMILY SSF58104 236 521 5.36E-77 T 28-03-2018 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 484 5.3E-61 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 SMART SM00304 216 268 2.2E-12 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 Pfam PF02203 Tar ligand binding domain homologue 1 176 1.3E-53 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 SMART SM00319 44 182 6.2E-56 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS01960 5adae1e2161657ee485dd18fffc6d361 553 Gene3D G3DSA:1.20.120.30 23 190 1.5E-45 T 28-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 SMART SM00267 249 420 1.8E-62 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 256 417 8.3E-38 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Pfam PF03707 Bacterial signalling protein N terminal repeat 184 241 8.8E-8 T 28-03-2018 IPR005330 MHYT domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Pfam PF03707 Bacterial signalling protein N terminal repeat 118 172 6.5E-10 T 28-03-2018 IPR005330 MHYT domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 102 5.4E-15 T 28-03-2018 IPR005330 MHYT domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 SMART SM00052 433 676 2.2E-106 T 28-03-2018 IPR001633 EAL domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Pfam PF00990 Diguanylate cyclase, GGDEF domain 261 415 2.5E-43 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 SUPERFAMILY SSF141868 436 681 6.8E-88 T 28-03-2018 IPR001633 EAL domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 SUPERFAMILY SSF55073 265 422 1.18E-47 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Pfam PF00563 EAL domain 436 671 1.6E-71 T 28-03-2018 IPR001633 EAL domain AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Gene3D G3DSA:3.30.70.270 254 426 7.3E-55 T 28-03-2018 AM348_RS16745 b9ecd51d68b3749920b7cfb4fa875b6d 704 Gene3D G3DSA:3.20.20.450 427 690 3.0E-95 T 28-03-2018 IPR001633 EAL domain AM348_RS03150 cb9ba759c90cd4213068393c61f62342 207 PIRSF PIRSF020606 1 204 1.0E-78 T 28-03-2018 IPR014509 Uncharacterised conserved protein UCP020606 AM348_RS03150 cb9ba759c90cd4213068393c61f62342 207 Pfam PF09997 Predicted membrane protein (DUF2238) 42 182 1.5E-55 T 28-03-2018 IPR014509 Uncharacterised conserved protein UCP020606 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 92 112 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 20 43 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 239 258 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 300 319 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 334 352 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 355 374 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 199 221 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 158 178 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 PRINTS PR00166 Aromatic amino acid permease signature 47 66 1.5E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 18 402 1.9E-142 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS02130 443f58f11d8995a777d39cbedd4d9847 421 Pfam PF03222 Tryptophan/tyrosine permease family 12 408 1.2E-135 T 28-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SMART SM00382 401 545 1.5E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Pfam PF01590 GAF domain 202 344 6.1E-12 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Pfam PF02954 Bacterial regulatory protein, Fis family 645 684 1.5E-5 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SUPERFAMILY SSF46689 594 687 1.12E-6 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SUPERFAMILY SSF55781 26 168 2.01E-11 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Pfam PF00158 Sigma-54 interaction domain 381 548 2.5E-70 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 594 603 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SUPERFAMILY SSF55781 184 360 9.38E-22 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Gene3D G3DSA:1.10.8.60 554 611 1.9E-21 T 28-03-2018 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Gene3D G3DSA:3.30.450.40 10 172 8.4E-15 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 405 418 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Gene3D G3DSA:3.30.450.40 176 384 3.8E-26 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SMART SM00065 26 174 1.1E-10 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SMART SM00065 202 354 1.1E-23 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 SUPERFAMILY SSF52540 380 618 2.03E-70 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Gene3D G3DSA:1.10.10.60 612 688 1.6E-10 T 28-03-2018 AM348_RS10325 0d5cba9f2dd7d56c47558e776e7ddd47 692 Gene3D G3DSA:3.40.50.300 385 553 3.5E-29 T 28-03-2018 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 SUPERFAMILY SSF55681 96 465 6.17E-96 T 28-03-2018 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 SUPERFAMILY SSF50249 16 101 1.71E-17 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.8E-14 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.8E-14 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.8E-14 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.8E-14 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 9.8E-81 T 28-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 Gene3D G3DSA:3.30.930.10 128 462 6.1E-95 T 28-03-2018 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 Gene3D G3DSA:2.40.50.140 8 106 1.3E-17 T 28-03-2018 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.134 T 28-03-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 1.4E-210 T 28-03-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 AM348_RS20645 d36c2cae8ab3b4b6f92ddb23ee45ad6b 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 2.5E-12 T 28-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM348_RS11265 1de14279c6bb5b99c3cd4dc0450fd2e8 318 Pfam PF03888 MucB/RseB N-terminal domain 28 204 1.3E-61 T 28-03-2018 IPR033434 MucB/RseB, N-terminal AM348_RS11265 1de14279c6bb5b99c3cd4dc0450fd2e8 318 PIRSF PIRSF005427 1 318 1.1E-100 T 28-03-2018 IPR005588 MucB/RseB AM348_RS11265 1de14279c6bb5b99c3cd4dc0450fd2e8 318 Gene3D G3DSA:2.50.20.10 19 223 4.5E-22 T 28-03-2018 AM348_RS11265 1de14279c6bb5b99c3cd4dc0450fd2e8 318 Pfam PF17188 MucB/RseB C-terminal domain 217 313 1.2E-29 T 28-03-2018 IPR033436 MucB/RseB, C-terminal AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 3.0E-14 T 28-03-2018 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 Pfam PF00453 Ribosomal protein L20 3 109 1.7E-49 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 SUPERFAMILY SSF74731 3 117 1.26E-50 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 Gene3D G3DSA:1.10.1900.20 55 116 2.4E-29 T 28-03-2018 IPR035566 Ribosomal protein L20 C-terminal domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 6.1E-53 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.4E-42 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.4E-42 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.4E-42 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18870 c3ccceaf707bf5713f1b4e9d3eed1f39 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.093 T 28-03-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS16330 01ad23f0a89ca59be47ed7e42fe5ad0a 80 Pfam PF06183 DinI-like family 17 77 8.7E-20 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS16330 01ad23f0a89ca59be47ed7e42fe5ad0a 80 SUPERFAMILY SSF54857 1 79 7.45E-25 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS16330 01ad23f0a89ca59be47ed7e42fe5ad0a 80 Gene3D G3DSA:3.30.910.10 1 77 2.3E-26 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 Gene3D G3DSA:3.30.470.20 198 392 7.9E-36 T 28-03-2018 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 SUPERFAMILY SSF51246 319 390 7.22E-17 T 28-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 Gene3D G3DSA:3.30.1490.20 129 197 3.8E-21 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 Gene3D G3DSA:3.40.50.20 14 112 1.6E-21 T 28-03-2018 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 Pfam PF02222 ATP-grasp domain 123 295 3.6E-56 T 28-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 1.3E-4 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 391 52.069 T 28-03-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 9.1E-192 T 28-03-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 SUPERFAMILY SSF52440 3 112 3.45E-37 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS15200 64edb974b3a5069a34027230b36e9c75 392 SUPERFAMILY SSF56059 113 315 1.57E-56 T 28-03-2018 AM348_RS06440 43d0152455390d2e90d51205ef064167 680 Pfam PF01432 Peptidase family M3 222 677 1.1E-174 T 28-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AM348_RS06440 43d0152455390d2e90d51205ef064167 680 SUPERFAMILY SSF55486 1 677 2.32E-213 T 28-03-2018 AM348_RS06440 43d0152455390d2e90d51205ef064167 680 Gene3D G3DSA:1.20.1050.40 4 138 8.4E-39 T 28-03-2018 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal AM348_RS06440 43d0152455390d2e90d51205ef064167 680 Gene3D G3DSA:1.10.1370.10 140 442 8.5E-61 T 28-03-2018 AM348_RS06440 43d0152455390d2e90d51205ef064167 680 Gene3D G3DSA:1.10.1370.10 457 680 2.0E-69 T 28-03-2018 AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 SMART SM00346 24 114 1.3E-38 T 28-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 Gene3D G3DSA:3.30.450.40 93 273 4.9E-47 T 28-03-2018 IPR029016 GAF domain-like AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 SUPERFAMILY SSF46785 24 97 3.29E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 Gene3D G3DSA:1.10.10.10 6 85 2.4E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 Pfam PF09339 IclR helix-turn-helix domain 26 76 1.1E-18 T 28-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 SUPERFAMILY SSF55781 95 271 2.29E-47 T 28-03-2018 IPR029016 GAF domain-like AM348_RS03805 b019cc5680214932d3aad9383ff58b36 274 Pfam PF01614 Bacterial transcriptional regulator 144 267 2.5E-39 T 28-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM348_RS19525 0efc401db8b34be3136c2e271ac33b4a 274 Gene3D G3DSA:3.90.1200.10 45 273 6.7E-14 T 28-03-2018 AM348_RS19525 0efc401db8b34be3136c2e271ac33b4a 274 SUPERFAMILY SSF56112 33 268 1.75E-25 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS19525 0efc401db8b34be3136c2e271ac33b4a 274 Hamap MF_01604 Thiamine kinase [thiK]. 3 270 37.559 T 28-03-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 AM348_RS19525 0efc401db8b34be3136c2e271ac33b4a 274 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 27 270 1.4E-94 T 28-03-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 AM348_RS19525 0efc401db8b34be3136c2e271ac33b4a 274 Pfam PF01636 Phosphotransferase enzyme family 39 225 8.5E-12 T 28-03-2018 IPR002575 Aminoglycoside phosphotransferase AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 Pfam PF01195 Peptidyl-tRNA hydrolase 5 188 2.3E-53 T 28-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 16 29 - T 28-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 SUPERFAMILY SSF53178 3 192 5.49E-70 T 28-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 110 120 - T 28-03-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 Gene3D G3DSA:3.40.50.1470 2 194 4.2E-68 T 28-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 3 189 6.3E-72 T 28-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM348_RS15705 9e06519873af790a8db9a41b5360ada3 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 3 182 36.274 T 28-03-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 Pfam PF00696 Amino acid kinase family 4 296 2.7E-27 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PIRSF PIRSF000723 1 315 2.7E-130 T 28-03-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 215 230 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 184 202 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 77 95 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 44 63 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 161 180 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 270 285 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 PRINTS PR01469 Bacterial carbamate kinase signature 111 130 3.4E-61 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 Gene3D G3DSA:3.40.1160.10 1 315 1.5E-47 T 28-03-2018 AM348_RS09610 35e3ff0f4d6b5c7e847ed7c387adf2da 316 SUPERFAMILY SSF53633 3 313 1.1E-72 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 SUPERFAMILY SSF53383 1 396 5.15E-117 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 Gene3D G3DSA:3.40.640.10 77 299 3.6E-32 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 28-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 Pfam PF00155 Aminotransferase class I and II 28 392 1.5E-94 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 Gene3D G3DSA:3.90.1150.10 300 396 1.6E-26 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 7.3E-40 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 7.3E-40 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 7.3E-40 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 7.3E-40 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS20655 228e442edb9c5b1de5dd29f59db5719f 396 Gene3D G3DSA:3.90.1150.10 1 76 3.7E-19 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS08885 3baf52e60a19c6432f63d0cd7fb26b30 491 PIRSF PIRSF006247 7 491 2.1E-165 T 28-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM348_RS08885 3baf52e60a19c6432f63d0cd7fb26b30 491 Pfam PF02386 Cation transport protein 46 486 1.2E-105 T 28-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AM348_RS08885 3baf52e60a19c6432f63d0cd7fb26b30 491 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 92 474 4.5E-113 T 28-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 Pfam PF03466 LysR substrate binding domain 93 288 2.9E-11 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.1E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 Gene3D G3DSA:3.40.190.10 179 262 7.0E-8 T 28-03-2018 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 SUPERFAMILY SSF53850 92 289 4.34E-18 T 28-03-2018 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 4.3E-112 T 28-03-2018 IPR017685 HTH-type transcriptional regulator ArgP AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 Gene3D G3DSA:1.10.10.10 2 82 1.1E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 58.752 T 28-03-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.5E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.5E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.5E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 Gene3D G3DSA:3.40.190.10 92 178 7.4E-34 T 28-03-2018 AM348_RS09380 954b435e37e6a89fa23db3d1bbb15a78 297 SUPERFAMILY SSF46785 4 110 6.42E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 SMART SM00825 Beta-ketoacyl synthase 4 406 1.7E-12 T 28-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 Gene3D G3DSA:3.40.47.10 262 406 1.5E-39 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 Gene3D G3DSA:3.40.47.10 4 259 3.9E-52 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 SUPERFAMILY SSF53901 215 403 2.34E-60 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 246 2.0E-38 T 28-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 361 2.5E-29 T 28-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 28-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM348_RS12405 99c39b9ce9aceb59b3fb33aa4450b3be 406 SUPERFAMILY SSF53901 1 253 6.34E-63 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:2.60.40.10 634 745 0.0048 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:2.60.40.10 1011 1113 7.4E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 PIRSF PIRSF038980 1 1644 0.0 T 28-03-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:2.60.40.10 854 1010 0.36 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:2.60.40.10 386 471 1.3E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Pfam PF01835 MG2 domain 380 471 8.0E-21 T 28-03-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 SUPERFAMILY SSF48239 1169 1425 3.14E-44 T 28-03-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 SMART SM01359 750 898 1.6E-34 T 28-03-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 751 898 1.5E-13 T 28-03-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:1.50.10.20 1159 1441 3.4E-26 T 28-03-2018 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:2.60.40.10 749 811 0.45 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 SMART SM01360 960 1049 6.4E-21 T 28-03-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 281 373 1.1E-21 T 28-03-2018 AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Gene3D G3DSA:2.60.40.10 287 357 0.25 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11560 0750bdcb2808d16f66cd5ba9b6b85c6d 1644 Pfam PF00207 Alpha-2-macroglobulin family 969 1049 1.0E-7 T 28-03-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82866 299 499 4.71E-45 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82866 827 1024 3.53E-45 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Gene3D G3DSA:1.20.1640.10 276 501 4.4E-44 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Gene3D G3DSA:1.20.1640.10 821 1025 7.9E-36 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82693 565 660 1.29E-17 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82714 719 800 1.22E-16 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82714 192 275 6.28E-17 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Gene3D G3DSA:3.30.2090.10 717 803 2.1E-18 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Gene3D G3DSA:3.30.2090.10 190 275 3.0E-17 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Gene3D G3DSA:3.30.70.1430 49 150 3.1E-24 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 33.797 T 28-03-2018 IPR022831 Multidrug resistance protein MdtB AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82693 49 138 2.04E-23 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82693 146 191 7.72E-22 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82693 277 333 7.72E-22 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82693 802 851 1.73E-9 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 SUPERFAMILY SSF82693 676 715 1.73E-9 T 28-03-2018 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.9E-80 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13635 715b7b7e83b00d1c22d32becf79bb744 1040 Gene3D G3DSA:3.30.70.1430 567 666 6.8E-16 T 28-03-2018 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 SMART SM00342 172 255 4.6E-22 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 Gene3D G3DSA:2.60.120.10 5 94 8.9E-5 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 Gene3D G3DSA:1.10.10.60 212 269 6.0E-8 T 28-03-2018 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 Pfam PF12833 Helix-turn-helix domain 179 256 5.1E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 SUPERFAMILY SSF51182 31 182 3.56E-11 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 Pfam PF02311 AraC-like ligand binding domain 21 81 1.1E-4 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 224 239 4.6E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 255 4.6E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 SUPERFAMILY SSF46689 211 257 8.96E-8 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS19225 f6b015e52cc4bdf637de144fbf6736bc 272 Gene3D G3DSA:1.10.10.60 119 211 2.3E-7 T 28-03-2018 AM348_RS04165 2f768f3760945a30ada47e818f09464a 765 SUPERFAMILY SSF51998 1 764 1.19E-215 T 28-03-2018 AM348_RS04165 2f768f3760945a30ada47e818f09464a 765 Gene3D G3DSA:3.20.70.20 1 765 1.7E-269 T 28-03-2018 AM348_RS04165 2f768f3760945a30ada47e818f09464a 765 Pfam PF01228 Glycine radical 646 747 9.5E-26 T 28-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM348_RS04165 2f768f3760945a30ada47e818f09464a 765 Pfam PF02901 Pyruvate formate lyase-like 1 626 2.3E-200 T 28-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AM348_RS04165 2f768f3760945a30ada47e818f09464a 765 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 1 765 0.0 T 28-03-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS04165 2f768f3760945a30ada47e818f09464a 765 ProSitePatterns PS00850 Glycine radical domain signature. 736 744 - T 28-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Gene3D G3DSA:3.30.1490.20 6 197 4.6E-55 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 482 789 8.6E-59 T 28-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 350 6.4E-121 T 28-03-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 386 457 4.7E-27 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 SUPERFAMILY SSF56059 7 386 2.71E-109 T 28-03-2018 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 9 792 0.0 T 28-03-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 PIRSF PIRSF000854 4 792 0.0 T 28-03-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 416 427 - T 28-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 SUPERFAMILY SSF51621 467 791 7.33E-95 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Gene3D G3DSA:3.50.30.10 360 478 2.5E-36 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 696 714 - T 28-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Gene3D G3DSA:3.30.470.20 198 359 5.0E-45 T 28-03-2018 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 SUPERFAMILY SSF52009 350 468 1.02E-35 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS18775 261898ffde231cab86d98709d48901ca 792 Gene3D G3DSA:3.20.20.60 480 792 3.6E-103 T 28-03-2018 AM348_RS01590 23acf4914357f2ef601404ea102294e4 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.083 T 28-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS01590 23acf4914357f2ef601404ea102294e4 87 Pfam PF01649 Ribosomal protein S20 2 84 5.9E-27 T 28-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS01590 23acf4914357f2ef601404ea102294e4 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 87 8.8E-34 T 28-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS01590 23acf4914357f2ef601404ea102294e4 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 86 8.0E-36 T 28-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS01590 23acf4914357f2ef601404ea102294e4 87 Gene3D G3DSA:1.20.58.110 1 87 1.0E-28 T 28-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS01590 23acf4914357f2ef601404ea102294e4 87 SUPERFAMILY SSF46992 3 86 5.62E-31 T 28-03-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS12855 38458f8387cd5f71166226952afe2b61 216 Gene3D G3DSA:2.60.120.590 11 216 3.9E-51 T 28-03-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AM348_RS12855 38458f8387cd5f71166226952afe2b61 216 SUPERFAMILY SSF51197 15 212 7.69E-62 T 28-03-2018 AM348_RS12855 38458f8387cd5f71166226952afe2b61 216 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 20 210 1.3E-53 T 28-03-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 Gene3D G3DSA:2.40.40.20 277 337 2.1E-21 T 28-03-2018 AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 5.4E-153 T 28-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 335 4.6E-146 T 28-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 Gene3D G3DSA:3.40.630.30 1 276 2.8E-26 T 28-03-2018 AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 SUPERFAMILY SSF55729 1 337 9.04E-135 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 337 1.4E-164 T 28-03-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM348_RS19015 a52f9b0e3713cfda01d14c2c6d02f8f7 344 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 343 71.798 T 28-03-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 481 43.095 T 28-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 SUPERFAMILY SSF53244 323 476 1.83E-43 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Pfam PF01225 Mur ligase family, catalytic domain 21 118 7.0E-30 T 28-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Pfam PF08245 Mur ligase middle domain 124 304 3.0E-28 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Gene3D G3DSA:3.90.190.20 325 480 5.3E-33 T 28-03-2018 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 326 417 6.8E-19 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 SUPERFAMILY SSF53623 105 322 2.09E-73 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Gene3D G3DSA:3.40.50.720 1 107 3.2E-18 T 28-03-2018 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 SUPERFAMILY SSF51984 20 106 2.49E-29 T 28-03-2018 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 Gene3D G3DSA:3.40.1190.10 108 324 9.5E-54 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01205 06d0f85442c1a7a4ae9d2cfbc9fb1446 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 475 9.2E-182 T 28-03-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 SMART SM00388 448 516 7.7E-6 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 Gene3D G3DSA:1.10.287.130 412 512 4.5E-6 T 28-03-2018 AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 Pfam PF00512 His Kinase A (phospho-acceptor) domain 450 513 2.1E-7 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 558 663 3.4E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 SUPERFAMILY SSF55874 516 662 1.96E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 SMART SM00387 558 664 7.1E-22 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 PIRSF PIRSF037119 403 666 7.7E-117 T 28-03-2018 IPR017116 Signal transduction histidine kinase, PgtB AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 PIRSF PIRSF037119 6 408 3.8E-127 T 28-03-2018 IPR017116 Signal transduction histidine kinase, PgtB AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 SUPERFAMILY SSF47384 444 513 1.77E-7 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 Gene3D G3DSA:3.30.565.10 518 669 1.1E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12220 84d170255fc3e2d38d931b14f739d4b5 669 SMART SM00304 365 417 5.6E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS10385 cf159b21ab4fbcd4fcf595c3627bdf51 255 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 48 157 2.7E-23 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10385 cf159b21ab4fbcd4fcf595c3627bdf51 255 SUPERFAMILY SSF56770 36 168 7.98E-50 T 28-03-2018 AM348_RS10385 cf159b21ab4fbcd4fcf595c3627bdf51 255 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 131 147 - T 28-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10385 cf159b21ab4fbcd4fcf595c3627bdf51 255 Gene3D G3DSA:3.40.50.700 20 178 1.3E-26 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 PIRSF PIRSF000521 26 421 1.9E-27 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 Pfam PF00202 Aminotransferase class-III 26 420 9.8E-130 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 SUPERFAMILY SSF53383 1 422 2.25E-136 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 Gene3D G3DSA:3.90.1150.10 213 265 0.015 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 Gene3D G3DSA:3.90.1150.10 266 425 4.0E-44 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 Gene3D G3DSA:3.90.1150.10 2 173 9.9E-47 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 421 1.5E-182 T 28-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AM348_RS21375 385b35d7a21f67d3d5fb0226d4ed93b1 429 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 424 51.369 T 28-03-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 Pfam PF00171 Aldehyde dehydrogenase family 9 458 2.4E-114 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 SUPERFAMILY SSF53720 3 455 7.59E-120 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 270 281 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 486 57.522 T 28-03-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 Gene3D G3DSA:3.40.605.10 1 258 1.3E-71 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 3 486 3.5E-249 T 28-03-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 AM348_RS19010 75fa5a7c13859143db886054659d4f8e 492 Gene3D G3DSA:3.40.309.10 259 453 1.2E-41 T 28-03-2018 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 3.6E-30 T 28-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 3.6E-30 T 28-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 3.6E-30 T 28-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 3.6E-30 T 28-03-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 SUPERFAMILY SSF47323 316 460 8.11E-45 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 Gene3D G3DSA:3.40.50.620 1 305 8.6E-93 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 7.0E-201 T 28-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 1.4E-145 T 28-03-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 SUPERFAMILY SSF52374 1 313 3.07E-105 T 28-03-2018 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 Gene3D G3DSA:1.20.120.640 306 394 1.6E-22 T 28-03-2018 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 SMART SM00840 341 402 1.7E-29 T 28-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 Pfam PF09190 DALR domain 341 402 1.1E-25 T 28-03-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 AM348_RS22750 fff5fcc6e3adb95f4e59c73e1d451502 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 39.773 T 28-03-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 AM348_RS13670 6a5d0ecd38f8ed6ffcc91363052f321e 193 Pfam PF00692 dUTPase 78 185 6.6E-8 T 28-03-2018 IPR029054 dUTPase-like AM348_RS13670 6a5d0ecd38f8ed6ffcc91363052f321e 193 SUPERFAMILY SSF51283 1 193 2.88E-59 T 28-03-2018 IPR029054 dUTPase-like AM348_RS13670 6a5d0ecd38f8ed6ffcc91363052f321e 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 33.683 T 28-03-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 AM348_RS13670 6a5d0ecd38f8ed6ffcc91363052f321e 193 Gene3D G3DSA:2.70.40.10 2 168 5.2E-44 T 28-03-2018 AM348_RS13670 6a5d0ecd38f8ed6ffcc91363052f321e 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 2.7E-67 T 28-03-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 AM348_RS02055 ed29d2c3c0411e3bc4d5a2835cb89f3d 255 Gene3D G3DSA:3.30.420.40 92 233 1.3E-33 T 28-03-2018 AM348_RS02055 ed29d2c3c0411e3bc4d5a2835cb89f3d 255 SUPERFAMILY SSF53067 3 249 2.34E-30 T 28-03-2018 AM348_RS02055 ed29d2c3c0411e3bc4d5a2835cb89f3d 255 Gene3D G3DSA:3.30.420.40 1 81 0.028 T 28-03-2018 AM348_RS02055 ed29d2c3c0411e3bc4d5a2835cb89f3d 255 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 3 247 2.4E-97 T 28-03-2018 IPR008275 CoA enzyme activase AM348_RS02055 ed29d2c3c0411e3bc4d5a2835cb89f3d 255 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 248 7.0E-64 T 28-03-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 AM348_RS23495 854141d9c749fd67140abbdac5ef26f2 63 Pfam PF16362 YaiA protein 1 62 1.4E-39 T 28-03-2018 IPR032303 YaiA protein AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 Gene3D G3DSA:3.40.50.300 6 263 1.8E-55 T 28-03-2018 AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 Gene3D G3DSA:3.40.50.300 264 491 4.6E-39 T 28-03-2018 AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 SUPERFAMILY SSF52540 270 489 6.94E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 SUPERFAMILY SSF52540 9 232 1.55E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 SMART SM00382 34 222 2.3E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 SMART SM00382 285 479 0.22 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 Pfam PF00005 ABC transporter 279 430 7.9E-18 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 Pfam PF00005 ABC transporter 25 174 1.9E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS02605 946fe9ed4028183d63e2e591b8cd4584 500 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS19850 265770cd66bb39460c44004d337f66f4 194 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 30.817 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS19850 265770cd66bb39460c44004d337f66f4 194 Pfam PF02545 Maf-like protein 3 186 4.6E-46 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS19850 265770cd66bb39460c44004d337f66f4 194 SUPERFAMILY SSF52972 1 185 2.35E-60 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS19850 265770cd66bb39460c44004d337f66f4 194 PIRSF PIRSF006305 1 193 3.3E-43 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS19850 265770cd66bb39460c44004d337f66f4 194 Gene3D G3DSA:3.90.950.10 2 194 3.6E-60 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS19850 265770cd66bb39460c44004d337f66f4 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 185 3.6E-67 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.9E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.9E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.9E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 5.9E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.9E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.9E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 246 1.9E-55 T 28-03-2018 AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 189 0.0038 T 28-03-2018 AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 Gene3D G3DSA:3.40.50.720 1 33 7.7E-7 T 28-03-2018 AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 Gene3D G3DSA:3.40.50.720 34 247 5.9E-61 T 28-03-2018 AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.7E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.7E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.7E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09455 231a9c9dfe53c66458de7d12a3ff32fa 247 SUPERFAMILY SSF51735 3 246 9.47E-73 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 8 1172 0.0 T 28-03-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Gene3D G3DSA:3.40.50.300 444 599 6.1E-19 T 28-03-2018 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Gene3D G3DSA:3.40.50.300 600 888 2.4E-28 T 28-03-2018 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Gene3D G3DSA:3.90.320.10 889 1180 1.2E-82 T 28-03-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 6 1173 23.251 T 28-03-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Pfam PF13361 UvrD-like helicase C-terminal domain 549 808 1.6E-17 T 28-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 SUPERFAMILY SSF52980 899 1174 6.97E-95 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Pfam PF12705 PD-(D/E)XK nuclease superfamily 950 1147 1.8E-5 T 28-03-2018 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Gene3D G3DSA:1.10.3170.10 155 349 1.2E-60 T 28-03-2018 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 436 9.3E-65 T 28-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 SUPERFAMILY SSF52540 325 825 3.78E-107 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 SUPERFAMILY SSF52540 16 80 3.78E-107 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09795 d58b82e5eaf24a29302a71158131191a 1181 SUPERFAMILY SSF52540 118 202 3.78E-107 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05550 21fcdf0cd0cf9470d5ccbc1724eac637 500 SUPERFAMILY SSF55874 381 496 1.37E-17 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05550 21fcdf0cd0cf9470d5ccbc1724eac637 500 Pfam PF07730 Histidine kinase 305 370 4.1E-14 T 28-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM348_RS05550 21fcdf0cd0cf9470d5ccbc1724eac637 500 SMART SM00387 409 499 4.1E-10 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05550 21fcdf0cd0cf9470d5ccbc1724eac637 500 Pfam PF05231 MASE1 11 276 4.7E-13 T 28-03-2018 IPR007895 MASE1 AM348_RS05550 21fcdf0cd0cf9470d5ccbc1724eac637 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 413 497 2.3E-6 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05550 21fcdf0cd0cf9470d5ccbc1724eac637 500 Gene3D G3DSA:3.30.565.10 367 499 1.3E-20 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 Pfam PF00072 Response regulator receiver domain 4 115 1.3E-30 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 5.7E-21 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 7.5E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 7.5E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 7.5E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 Gene3D G3DSA:1.10.10.10 126 214 1.0E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 Gene3D G3DSA:3.40.50.2300 1 125 1.6E-34 T 28-03-2018 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 SMART SM00448 2 115 1.7E-31 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 SMART SM00421 147 204 2.4E-19 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 SUPERFAMILY SSF46894 147 210 2.55E-16 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 SUPERFAMILY SSF52172 3 162 2.34E-33 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS14535 8978fd7eb46da18816c22606008454f8 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01635 5e0d1e2508c733009ae537382f24d7da 188 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 8 17 - T 28-03-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 AM348_RS01635 5e0d1e2508c733009ae537382f24d7da 188 Pfam PF01184 GPR1/FUN34/yaaH family 4 176 9.3E-42 T 28-03-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 AM348_RS15375 508e64d1800ee5c18c6712b51ae466f3 266 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 266 3.1E-129 T 28-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM348_RS15375 508e64d1800ee5c18c6712b51ae466f3 266 Pfam PF03609 PTS system sorbose-specific iic component 6 237 9.0E-76 T 28-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 SUPERFAMILY SSF56935 461 726 6.11E-94 T 28-03-2018 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 SUPERFAMILY SSF56935 27 430 6.11E-94 T 28-03-2018 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 Pfam PF00593 TonB dependent receptor 233 722 2.2E-29 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 709 726 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 Gene3D G3DSA:2.170.130.10 16 147 2.4E-24 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 Gene3D G3DSA:2.40.170.20 148 726 5.7E-53 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 Pfam PF07715 TonB-dependent Receptor Plug Domain 39 140 8.1E-18 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS19500 eaf74cb555024d82f7b6658cdfdd4d7d 726 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 40 726 5.1E-143 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS15795 487b0344c904c7975f0ba77d0e1dc94f 366 Pfam PF01699 Sodium/calcium exchanger protein 41 190 3.8E-14 T 28-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM348_RS15795 487b0344c904c7975f0ba77d0e1dc94f 366 Pfam PF01699 Sodium/calcium exchanger protein 224 364 2.8E-8 T 28-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM348_RS15795 487b0344c904c7975f0ba77d0e1dc94f 366 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 3 365 1.0E-121 T 28-03-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 Pfam PF05683 Fumarase C-terminus 332 537 3.3E-93 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 55 325 1.8E-32 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 2.7E-63 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 SUPERFAMILY SSF117457 361 536 2.75E-61 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 PIRSF PIRSF001394 30 548 9.7E-234 T 28-03-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 Gene3D G3DSA:3.20.130.10 359 536 1.2E-67 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 Pfam PF05681 Fumarate hydratase (Fumerase) 51 326 2.5E-86 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS03145 941b5f51ca81d5deab4b0640e4f0ac0f 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS19475 43b3562d93c6061045d659de71ae502f 354 Pfam PF01757 Acyltransferase family 7 323 1.0E-17 T 28-03-2018 IPR002656 Acyltransferase 3 GO:0016747 AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 Pfam PF03466 LysR substrate binding domain 85 284 1.8E-44 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 Gene3D G3DSA:3.40.190.10 78 170 2.8E-18 T 28-03-2018 AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 SUPERFAMILY SSF46785 1 109 2.12E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 Gene3D G3DSA:3.40.190.10 171 260 2.1E-16 T 28-03-2018 AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 SUPERFAMILY SSF53850 85 289 3.65E-38 T 28-03-2018 AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 Gene3D G3DSA:1.10.10.10 1 77 4.2E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17710 c4c51fbd4f88266f53bbeddfd9d2cc81 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.3E-17 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PIRSF PIRSF000532 1 320 2.6E-131 T 28-03-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 Gene3D G3DSA:3.40.50.450 214 307 3.7E-9 T 28-03-2018 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 6.7E-125 T 28-03-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 28-03-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 SUPERFAMILY SSF53784 3 309 8.11E-114 T 28-03-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 46.938 T 28-03-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 Gene3D G3DSA:3.40.50.450 1 213 5.1E-82 T 28-03-2018 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 Pfam PF00365 Phosphofructokinase 4 276 6.6E-107 T 28-03-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS04365 f71debeda8f4afa2039655f53a6facbd 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 8.7E-82 T 28-03-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Pfam PF02824 TGS domain 4 61 1.1E-11 T 28-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 6.6E-247 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 SUPERFAMILY SSF81271 3 61 1.11E-15 T 28-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 528 4.8E-51 T 28-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 SUPERFAMILY SSF52954 530 636 5.29E-34 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 SUPERFAMILY SSF55186 63 241 6.15E-65 T 28-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Gene3D G3DSA:3.30.930.10 223 531 1.2E-120 T 28-03-2018 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.1E-14 T 28-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Gene3D G3DSA:3.30.980.10 65 146 1.5E-21 T 28-03-2018 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Gene3D G3DSA:3.30.980.10 147 222 5.7E-17 T 28-03-2018 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 8.1E-55 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 8.1E-55 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 8.1E-55 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 8.1E-55 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 8.1E-55 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Pfam PF03129 Anticodon binding domain 541 630 2.4E-23 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 SUPERFAMILY SSF55681 243 525 9.95E-97 T 28-03-2018 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Gene3D G3DSA:3.40.50.800 532 642 1.0E-29 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Gene3D G3DSA:3.10.20.30 1 64 1.0E-19 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 SMART SM00863 170 219 1.4E-19 T 28-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM348_RS18885 c20ad1d5b1e0da8466195bc6d64d8ed4 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 34.217 T 28-03-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 AM348_RS23555 df4aacedda33bce986a52df91832b565 367 Pfam PF07759 Protein of unknown function (DUF1615) 50 363 9.6E-148 T 28-03-2018 IPR011673 Protein of unknown function DUF1615 AM348_RS23555 df4aacedda33bce986a52df91832b565 367 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 13 364 0.0 T 28-03-2018 IPR011673 Protein of unknown function DUF1615 AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 4.2E-25 T 28-03-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.69 T 28-03-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0019 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 Gene3D G3DSA:2.160.10.10 87 257 4.5E-36 T 28-03-2018 AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 6.2E-13 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 Gene3D G3DSA:1.10.166.10 3 69 4.3E-28 T 28-03-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 SUPERFAMILY SSF51161 1 256 2.36E-80 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS00790 c6bfe9678a8df97347eacedbc915fbd7 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 4.7E-163 T 28-03-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 Pfam PF00664 ABC transporter transmembrane region 26 295 5.5E-42 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 Pfam PF00005 ABC transporter 357 505 6.3E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 Gene3D G3DSA:1.20.1560.10 6 328 1.6E-61 T 28-03-2018 AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 SUPERFAMILY SSF52540 336 576 7.89E-79 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 SMART SM00382 366 557 1.1E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 Gene3D G3DSA:3.40.50.300 329 581 6.7E-68 T 28-03-2018 AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS23135 462169c6197b867f349cb3aab0d618eb 592 SUPERFAMILY SSF90123 12 331 5.36E-69 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 321 8.8E-16 T 28-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 Gene3D G3DSA:3.40.50.970 347 541 4.0E-34 T 28-03-2018 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 SUPERFAMILY SSF52518 5 181 5.4E-41 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 SUPERFAMILY SSF52518 355 538 3.57E-44 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 Gene3D G3DSA:3.40.50.970 1 195 6.9E-44 T 28-03-2018 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 179 5.1E-33 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 526 1.8E-17 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 SUPERFAMILY SSF52467 167 323 8.72E-27 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 Gene3D G3DSA:3.40.50.1220 196 346 2.9E-22 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 28-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM348_RS12150 af4e5a6a7aba09fc761ed02cdb7a3732 550 PIRSF PIRSF036565 1 550 6.9E-196 T 28-03-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 AM348_RS16565 26634ea9984cc6bd60015a5b116dabee 268 SMART SM00382 39 228 3.9E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS16565 26634ea9984cc6bd60015a5b116dabee 268 SUPERFAMILY SSF52540 5 251 6.37E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16565 26634ea9984cc6bd60015a5b116dabee 268 Pfam PF00005 ABC transporter 31 178 1.6E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS16565 26634ea9984cc6bd60015a5b116dabee 268 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS16565 26634ea9984cc6bd60015a5b116dabee 268 Gene3D G3DSA:3.40.50.300 2 257 2.7E-65 T 28-03-2018 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 Pfam PF03797 Autotransporter beta-domain 715 952 1.3E-42 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 SUPERFAMILY SSF103515 681 973 2.75E-54 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 SUPERFAMILY SSF51126 172 674 2.92E-18 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 PRINTS PR01484 Pertactin virulence factor family signature 752 776 9.1E-9 T 28-03-2018 IPR003991 Pertactin virulence factor family GO:0007155 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 PRINTS PR01484 Pertactin virulence factor family signature 953 973 9.1E-9 T 28-03-2018 IPR003991 Pertactin virulence factor family GO:0007155 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 PRINTS PR01484 Pertactin virulence factor family signature 712 732 9.1E-9 T 28-03-2018 IPR003991 Pertactin virulence factor family GO:0007155 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 PRINTS PR01484 Pertactin virulence factor family signature 928 953 9.1E-9 T 28-03-2018 IPR003991 Pertactin virulence factor family GO:0007155 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 PRINTS PR01484 Pertactin virulence factor family signature 862 885 9.1E-9 T 28-03-2018 IPR003991 Pertactin virulence factor family GO:0007155 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 Gene3D G3DSA:2.40.128.130 687 973 1.7E-47 T 28-03-2018 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 577 973 7.5E-82 T 28-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 Gene3D G3DSA:2.160.20.20 17 450 7.9E-13 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 Gene3D G3DSA:2.160.20.20 451 686 1.1E-7 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS23575 6e6ad75d0df62feccd6208debe89aea6 973 SMART SM00869 712 962 4.9E-42 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS19445 240935aa6886687fca1a3fc5268dfe24 273 Gene3D G3DSA:3.40.50.1220 31 272 4.7E-55 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS19445 240935aa6886687fca1a3fc5268dfe24 273 Pfam PF02146 Sir2 family 48 221 1.2E-52 T 28-03-2018 IPR003000 Sirtuin family GO:0070403 AM348_RS19445 240935aa6886687fca1a3fc5268dfe24 273 SUPERFAMILY SSF52467 41 270 1.82E-75 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS19445 240935aa6886687fca1a3fc5268dfe24 273 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 41 271 61.292 T 28-03-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 Gene3D G3DSA:3.30.420.40 2 93 0.0053 T 28-03-2018 AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 SUPERFAMILY SSF53067 407 600 1.0E-32 T 28-03-2018 AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 TIGRFAM TIGR04491 reactive_PduG: diol dehydratase reactivase alpha subunit 3 599 6.0E-287 T 28-03-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 Gene3D G3DSA:2.40.50.140 464 504 2.4E-22 T 28-03-2018 AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 Gene3D G3DSA:3.50.30.70 94 245 2.8E-63 T 28-03-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 SUPERFAMILY SSF82317 88 252 3.79E-67 T 28-03-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 Pfam PF08841 Diol dehydratase reactivase ATPase-like domain 274 599 2.9E-155 T 28-03-2018 IPR030994 Diol dehydratase reactivase ATPase-like domain AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 SUPERFAMILY SSF53067 246 401 2.01E-42 T 28-03-2018 AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 PIRSF PIRSF011502 1 604 0.0 T 28-03-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 Gene3D G3DSA:3.30.420.40 505 604 4.1E-18 T 28-03-2018 AM348_RS08590 83cc741ad9342c56c653e4a05eade13a 604 Gene3D G3DSA:3.30.420.40 308 406 0.0033 T 28-03-2018 AM348_RS01050 0d1766d6beb9f2e7e1e21c461dd2e9b5 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.73 T 28-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM348_RS01050 0d1766d6beb9f2e7e1e21c461dd2e9b5 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 1.0E-59 T 28-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM348_RS01050 0d1766d6beb9f2e7e1e21c461dd2e9b5 120 PIRSF PIRSF006287 1 120 5.8E-50 T 28-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM348_RS01050 0d1766d6beb9f2e7e1e21c461dd2e9b5 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 1.0E-42 T 28-03-2018 IPR008249 Uncharacterised protein family UPF0231 AM348_RS11395 0c55d28c5c0e8a03406bf53a931506ec 106 Pfam PF00355 Rieske [2Fe-2S] domain 4 88 4.2E-17 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS11395 0c55d28c5c0e8a03406bf53a931506ec 106 SUPERFAMILY SSF50022 1 103 2.36E-27 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS11395 0c55d28c5c0e8a03406bf53a931506ec 106 Gene3D G3DSA:2.102.10.10 3 106 6.3E-21 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS12825 0015f1666e50659200c4435af1faec24 889 Gene3D G3DSA:1.20.120.160 774 889 1.3E-15 T 28-03-2018 AM348_RS12825 0015f1666e50659200c4435af1faec24 889 SMART SM00387 565 678 2.5E-5 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12825 0015f1666e50659200c4435af1faec24 889 SUPERFAMILY SSF55874 514 677 7.36E-13 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12825 0015f1666e50659200c4435af1faec24 889 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 15 889 24.562 T 28-03-2018 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 AM348_RS12825 0015f1666e50659200c4435af1faec24 889 SUPERFAMILY SSF47226 797 888 1.03E-19 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS12825 0015f1666e50659200c4435af1faec24 889 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 565 676 6.7E-11 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12825 0015f1666e50659200c4435af1faec24 889 Pfam PF16359 RcsD-ABL domain 687 788 5.8E-40 T 28-03-2018 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain AM348_RS12825 0015f1666e50659200c4435af1faec24 889 Pfam PF01627 Hpt domain 810 869 4.3E-10 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS12825 0015f1666e50659200c4435af1faec24 889 Gene3D G3DSA:3.30.565.10 522 689 8.6E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08055 fa0217250c974d9a6209a952a204a575 97 Gene3D G3DSA:3.30.110.60 2 97 9.1E-29 T 28-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM348_RS08055 fa0217250c974d9a6209a952a204a575 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 7.3E-23 T 28-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM348_RS08055 fa0217250c974d9a6209a952a204a575 97 SMART SM01103 3 86 3.3E-41 T 28-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM348_RS08055 fa0217250c974d9a6209a952a204a575 97 SUPERFAMILY SSF75471 1 95 2.75E-31 T 28-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM348_RS08055 fa0217250c974d9a6209a952a204a575 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 9.3E-43 T 28-03-2018 IPR017924 RNA-binding protein YhbY GO:0003723 AM348_RS08055 fa0217250c974d9a6209a952a204a575 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 2.0E-44 T 28-03-2018 IPR001890 RNA-binding, CRM domain GO:0003723 AM348_RS06845 daad288843305884f30485db3deaba72 345 Gene3D G3DSA:3.30.360.10 135 338 2.9E-31 T 28-03-2018 AM348_RS06845 daad288843305884f30485db3deaba72 345 Gene3D G3DSA:3.40.50.720 1 134 4.1E-33 T 28-03-2018 AM348_RS06845 daad288843305884f30485db3deaba72 345 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 239 4.1E-16 T 28-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS06845 daad288843305884f30485db3deaba72 345 SUPERFAMILY SSF51735 3 195 1.08E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS06845 daad288843305884f30485db3deaba72 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 120 5.4E-28 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS06610 9048b27ab8d5733e51ec1065da4ca8df 772 Pfam PF03176 MMPL family 252 402 1.2E-9 T 28-03-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 AM348_RS06610 9048b27ab8d5733e51ec1065da4ca8df 772 SUPERFAMILY SSF82866 637 764 2.75E-16 T 28-03-2018 AM348_RS06610 9048b27ab8d5733e51ec1065da4ca8df 772 SUPERFAMILY SSF82866 222 404 9.81E-21 T 28-03-2018 AM348_RS06610 9048b27ab8d5733e51ec1065da4ca8df 772 Gene3D G3DSA:1.20.1640.10 595 707 2.1E-10 T 28-03-2018 AM348_RS06610 9048b27ab8d5733e51ec1065da4ca8df 772 Gene3D G3DSA:1.20.1640.10 714 765 0.083 T 28-03-2018 AM348_RS06610 9048b27ab8d5733e51ec1065da4ca8df 772 Gene3D G3DSA:1.20.1640.10 204 408 1.1E-21 T 28-03-2018 AM348_RS11860 c2b80c2689ddd05f0fb02c05354acfcd 95 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 83 4.2E-30 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS11860 c2b80c2689ddd05f0fb02c05354acfcd 95 SUPERFAMILY SSF159133 1 94 5.76E-31 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS11860 c2b80c2689ddd05f0fb02c05354acfcd 95 Gene3D G3DSA:2.40.50.220 2 95 3.9E-33 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS11860 c2b80c2689ddd05f0fb02c05354acfcd 95 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 83 4.0E-35 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS10625 e461c41451e25e88fa9039f3f801e7a9 136 Pfam PF07972 NrdI Flavodoxin like 5 122 5.3E-48 T 28-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AM348_RS10625 e461c41451e25e88fa9039f3f801e7a9 136 SUPERFAMILY SSF52218 2 131 2.26E-23 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10625 e461c41451e25e88fa9039f3f801e7a9 136 TIGRFAM TIGR00333 nrdI: nrdI protein 5 131 7.1E-61 T 28-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AM348_RS10625 e461c41451e25e88fa9039f3f801e7a9 136 Gene3D G3DSA:3.40.50.360 4 131 2.7E-25 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10625 e461c41451e25e88fa9039f3f801e7a9 136 Hamap MF_00128 Protein NrdI [nrdI]. 3 132 36.991 T 28-03-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial AM348_RS10625 e461c41451e25e88fa9039f3f801e7a9 136 PIRSF PIRSF005087 1 136 4.2E-55 T 28-03-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 117 131 7.2E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 131 147 7.2E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 159 7.2E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 SUPERFAMILY SSF46894 112 167 3.13E-9 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 SMART SM00421 114 171 2.3E-4 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 Gene3D G3DSA:1.10.10.10 21 163 2.0E-6 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15675 a7fba83ec866288c6b547241506c7d8b 183 Pfam PF00196 Bacterial regulatory proteins, luxR family 116 165 1.1E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 Pfam PF14821 Threonine synthase N terminus 8 80 1.1E-12 T 28-03-2018 IPR029144 Threonine synthase, N-terminal AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 28-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 Gene3D G3DSA:3.40.50.1100 323 393 1.2E-12 T 28-03-2018 AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 Gene3D G3DSA:3.40.50.1100 198 322 4.6E-40 T 28-03-2018 AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 Gene3D G3DSA:3.40.50.1100 101 197 1.6E-18 T 28-03-2018 AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 Gene3D G3DSA:3.90.1380.10 1 81 3.1E-18 T 28-03-2018 IPR029144 Threonine synthase, N-terminal AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 SUPERFAMILY SSF53686 1 425 1.44E-131 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 97 369 9.4E-24 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS01665 677ada6f1310a9e8da60a7a97daa7781 428 TIGRFAM TIGR00260 thrC: threonine synthase 52 395 6.4E-125 T 28-03-2018 IPR004450 Threonine synthase-like AM348_RS07255 bee65358cd1eac8db00b96c608e15804 66 SUPERFAMILY SSF57783 10 47 4.08E-5 T 28-03-2018 AM348_RS07255 bee65358cd1eac8db00b96c608e15804 66 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 58 6.9E-19 T 28-03-2018 IPR012658 Conserved hypothetical protein CHP02443 AM348_RS07255 bee65358cd1eac8db00b96c608e15804 66 Gene3D G3DSA:2.20.25.10 10 51 6.1E-7 T 28-03-2018 AM348_RS07255 bee65358cd1eac8db00b96c608e15804 66 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 3 60 7.7E-32 T 28-03-2018 IPR012658 Conserved hypothetical protein CHP02443 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PRINTS PR00471 Acetate kinase family signature 199 220 3.6E-47 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PRINTS PR00471 Acetate kinase family signature 296 309 3.6E-47 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PRINTS PR00471 Acetate kinase family signature 374 386 3.6E-47 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PRINTS PR00471 Acetate kinase family signature 318 334 3.6E-47 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PRINTS PR00471 Acetate kinase family signature 169 182 3.6E-47 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PRINTS PR00471 Acetate kinase family signature 7 18 3.6E-47 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 Hamap MF_00020 Acetate kinase [ackA]. 1 396 163.399 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 28-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 SUPERFAMILY SSF53067 5 191 4.32E-65 T 28-03-2018 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 Pfam PF00871 Acetokinase family 7 387 3.2E-165 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 Gene3D G3DSA:3.30.420.40 193 400 2.7E-75 T 28-03-2018 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 199 216 - T 28-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 PIRSF PIRSF000722 3 397 7.6E-137 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 SUPERFAMILY SSF53067 153 392 4.1E-87 T 28-03-2018 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 Gene3D G3DSA:3.30.420.40 6 191 3.3E-65 T 28-03-2018 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 TIGRFAM TIGR00016 ackA: acetate kinase 4 392 5.6E-169 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS08320 bbd12b57b3ece188d2e347b31de09ece 402 Hamap MF_01881 Propionate kinase [tdcD]. 1 402 74.201 T 28-03-2018 IPR024917 Propionate kinase KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 Gene3D G3DSA:3.40.50.1820 9 683 1.2E-78 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 Pfam PF00326 Prolyl oligopeptidase family 471 683 7.3E-67 T 28-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 SUPERFAMILY SSF50993 9 416 5.23E-81 T 28-03-2018 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 11 411 1.4E-111 T 28-03-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 508 527 2.1E-52 T 28-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 538 558 2.1E-52 T 28-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 454 472 2.1E-52 T 28-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 480 504 2.1E-52 T 28-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 596 611 2.1E-52 T 28-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 614 636 2.1E-52 T 28-03-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 AM348_RS15220 8a2f62618a992fd6cd134ad384bf6229 692 SUPERFAMILY SSF53474 422 663 1.23E-43 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 SUPERFAMILY SSF52540 1 141 5.31E-40 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 28-03-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 Pfam PF00265 Thymidine kinase 2 186 5.1E-66 T 28-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 35.608 T 28-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 SUPERFAMILY SSF57716 142 191 9.98E-17 T 28-03-2018 AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 Gene3D G3DSA:3.40.50.300 2 141 8.9E-45 T 28-03-2018 AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 PIRSF PIRSF035805 1 200 7.7E-59 T 28-03-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 AM348_RS15940 4ed046edc3b2817e9ed921f889b12355 205 Gene3D G3DSA:3.30.60.20 142 193 4.4E-19 T 28-03-2018 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 405 422 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 Gene3D G3DSA:2.70.70.10 488 648 2.0E-53 T 28-03-2018 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 Pfam PF00367 phosphotransferase system, EIIB 396 427 7.8E-12 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 Pfam PF02378 Phosphotransferase system, EIIC 12 300 1.1E-73 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 563 575 - T 28-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 SUPERFAMILY SSF55604 392 465 2.48E-18 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 500 624 2.1E-46 T 28-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 463 2.2E-212 T 28-03-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 Gene3D G3DSA:3.30.1360.60 390 466 3.9E-23 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 360 452 2.1E-26 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 SUPERFAMILY SSF51261 496 644 4.71E-50 T 28-03-2018 IPR011055 Duplicated hybrid motif AM348_RS21945 0b74bba4a665fdba0b569a724855512d 649 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 501 621 1.1E-46 T 28-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Gene3D G3DSA:3.30.70.1450 190 279 1.4E-9 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 SUPERFAMILY SSF116726 205 271 1.18E-8 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Gene3D G3DSA:3.30.70.1450 280 366 3.2E-13 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 SUPERFAMILY SSF116726 285 360 9.68E-13 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Pfam PF02080 TrkA-C domain 212 270 7.5E-7 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Pfam PF02080 TrkA-C domain 291 358 1.1E-9 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Pfam PF06826 Predicted Permease Membrane Region 11 179 4.2E-42 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Pfam PF06826 Predicted Permease Membrane Region 374 546 8.8E-48 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 553 57.668 T 28-03-2018 IPR023018 Transport protein YidE, putative AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 1.7E-38 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS05455 e17067eab4c23406534df6a06aa9af5f 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 3.3E-49 T 28-03-2018 IPR006512 YidE/YbjL duplication AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 PIRSF PIRSF000729 1 367 3.2E-146 T 28-03-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 28-03-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 SUPERFAMILY SSF88697 276 365 1.05E-23 T 28-03-2018 IPR015947 PUA-like domain AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 Gene3D G3DSA:2.30.130.10 274 366 8.5E-30 T 28-03-2018 IPR002478 PUA domain GO:0003723 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 Gene3D G3DSA:3.40.1160.10 1 265 1.1E-62 T 28-03-2018 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 SMART SM00359 276 359 8.3E-22 T 28-03-2018 IPR002478 PUA domain GO:0003723 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 Pfam PF00696 Amino acid kinase family 6 234 6.2E-44 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 2.5E-56 T 28-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 2.5E-56 T 28-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 2.5E-56 T 28-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 2.5E-56 T 28-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 2.5E-56 T 28-03-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 SUPERFAMILY SSF53633 6 256 3.01E-65 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 2.1E-156 T 28-03-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 Pfam PF01472 PUA domain 276 350 2.9E-22 T 28-03-2018 IPR002478 PUA domain GO:0003723 AM348_RS00405 b85f13cb31282585ca28f87d1f36a77e 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 259 36.181 T 28-03-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 13 313 4.9E-109 T 28-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 SUPERFAMILY SSF55174 17 69 5.89E-11 T 28-03-2018 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 Gene3D G3DSA:3.30.2350.10 83 316 2.0E-67 T 28-03-2018 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 SMART SM00363 18 83 7.4E-13 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 SUPERFAMILY SSF55120 78 323 6.99E-78 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 Pfam PF01479 S4 domain 18 65 1.6E-10 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 28-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 Pfam PF00849 RNA pseudouridylate synthase 92 242 1.9E-30 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS11140 15bf0aa5d1a53e95e55b77f423f07dca 326 Gene3D G3DSA:3.10.290.10 2 76 9.2E-21 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS13255 93e0b0174646bee42eb23345b7ce843f 452 Gene3D G3DSA:1.20.1250.20 13 211 4.2E-40 T 28-03-2018 AM348_RS13255 93e0b0174646bee42eb23345b7ce843f 452 Gene3D G3DSA:1.20.1250.20 232 433 5.7E-31 T 28-03-2018 AM348_RS13255 93e0b0174646bee42eb23345b7ce843f 452 Pfam PF07690 Major Facilitator Superfamily 28 287 4.3E-35 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS13255 93e0b0174646bee42eb23345b7ce843f 452 SUPERFAMILY SSF103473 7 431 1.02E-84 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00035 b4441fec4b4896d91b9ea0e50782b400 314 SUPERFAMILY SSF53213 5 185 4.84E-72 T 28-03-2018 AM348_RS00035 b4441fec4b4896d91b9ea0e50782b400 314 SUPERFAMILY SSF53213 230 310 4.84E-72 T 28-03-2018 AM348_RS00035 b4441fec4b4896d91b9ea0e50782b400 314 Gene3D G3DSA:3.40.830.10 3 314 3.0E-49 T 28-03-2018 AM348_RS00035 b4441fec4b4896d91b9ea0e50782b400 314 Hamap MF_01653 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase [mhpB]. 1 313 54.684 T 28-03-2018 IPR023789 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase GO:0005506|GO:0019439|GO:0047070|GO:0055114 KEGG: 00360+1.13.11.16|MetaCyc: PWY-6690 AM348_RS00035 b4441fec4b4896d91b9ea0e50782b400 314 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 4 306 1.9E-87 T 28-03-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 4.7E-257 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 SUPERFAMILY SSF48592 406 521 3.51E-77 T 28-03-2018 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 SUPERFAMILY SSF48592 7 134 3.51E-77 T 28-03-2018 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 SUPERFAMILY SSF52029 185 376 2.27E-83 T 28-03-2018 IPR027409 GroEL-like apical domain AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 SUPERFAMILY SSF54849 137 203 1.42E-24 T 28-03-2018 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 Gene3D G3DSA:1.10.560.10 374 516 9.6E-24 T 28-03-2018 IPR027413 GroEL-like equatorial domain AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.495 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 28-03-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 Gene3D G3DSA:1.10.560.10 1 184 1.2E-43 T 28-03-2018 IPR027413 GroEL-like equatorial domain AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 28-03-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 Gene3D G3DSA:3.50.7.10 185 373 8.9E-98 T 28-03-2018 IPR027409 GroEL-like apical domain AM348_RS03040 c1236a9f363e7421d04f6fc484d00c9e 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 7.3E-95 T 28-03-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 AM348_RS09175 9fb62ed6f3aef6b80f7041f11e2a45d3 418 Hamap MF_02049 Nucleoside permease NupG [nupG]. 1 417 48.89 T 28-03-2018 IPR033667 Nucleoside permease NupG GO:0005887|GO:1901642 AM348_RS09175 9fb62ed6f3aef6b80f7041f11e2a45d3 418 Gene3D G3DSA:1.20.1250.20 5 194 4.6E-6 T 28-03-2018 AM348_RS09175 9fb62ed6f3aef6b80f7041f11e2a45d3 418 SUPERFAMILY SSF103473 9 406 9.94E-32 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS09175 9fb62ed6f3aef6b80f7041f11e2a45d3 418 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 418 1.6E-214 T 28-03-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 AM348_RS09175 9fb62ed6f3aef6b80f7041f11e2a45d3 418 Pfam PF03825 Nucleoside H+ symporter 1 406 2.4E-181 T 28-03-2018 AM348_RS09175 9fb62ed6f3aef6b80f7041f11e2a45d3 418 Gene3D G3DSA:1.20.1250.20 195 410 2.7E-20 T 28-03-2018 AM348_RS20805 86f4e735f95937e94f3897ac22cd8efa 382 Gene3D G3DSA:1.20.1250.20 189 378 6.2E-20 T 28-03-2018 AM348_RS20805 86f4e735f95937e94f3897ac22cd8efa 382 Gene3D G3DSA:1.20.1250.20 2 188 3.1E-21 T 28-03-2018 AM348_RS20805 86f4e735f95937e94f3897ac22cd8efa 382 SUPERFAMILY SSF103473 6 372 3.14E-43 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS20805 86f4e735f95937e94f3897ac22cd8efa 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 35.975 T 28-03-2018 IPR023745 MSF-type transporter, YcaD AM348_RS20805 86f4e735f95937e94f3897ac22cd8efa 382 Pfam PF07690 Major Facilitator Superfamily 11 282 5.5E-20 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 SUPERFAMILY SSF46955 2 121 5.86E-35 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 4.8E-62 T 28-03-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 1.3E-11 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 1.3E-11 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 1.3E-11 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 Gene3D G3DSA:1.10.1660.10 58 141 1.7E-25 T 28-03-2018 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 SMART SM00422 2 71 4.5E-31 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 Pfam PF13411 MerR HTH family regulatory protein 2 69 1.7E-20 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS07480 4e45a887a17453572c6fb5f2086ce28a 141 Gene3D G3DSA:1.10.1660.10 1 57 6.9E-24 T 28-03-2018 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SMART SM00955 260 588 3.6E-185 T 28-03-2018 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Gene3D G3DSA:2.40.50.140 641 726 3.8E-21 T 28-03-2018 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Hamap MF_01895 Ribonuclease R [rnr]. 38 725 57.591 T 28-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 ProSitePatterns PS01175 Ribonuclease II family signature. 555 579 - T 28-03-2018 IPR022966 Ribonuclease II/R, conserved site AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SMART SM00316 642 725 4.1E-17 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SUPERFAMILY SSF50249 138 235 2.1E-14 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 725 8.7E-286 T 28-03-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 2.6E-14 T 28-03-2018 IPR013668 Ribonuclease R winged-helix domain AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Gene3D G3DSA:1.10.10.10 15 79 1.6E-6 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 725 9.4E-287 T 28-03-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Pfam PF00575 S1 RNA binding domain 641 724 6.4E-19 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SUPERFAMILY SSF50249 222 641 4.34E-142 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SUPERFAMILY SSF50249 644 724 2.35E-22 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Pfam PF08206 Ribonuclease B OB domain 87 144 4.3E-22 T 28-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SUPERFAMILY SSF50249 67 145 1.94E-16 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 Pfam PF00773 RNB domain 260 587 1.3E-110 T 28-03-2018 AM348_RS02845 dbaab523c9bb1c1fc567a5d57207b801 820 SMART SM00357 86 145 2.1E-16 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS15105 57e208d4db2eba21609df5f7a49cfd5b 272 Gene3D G3DSA:3.20.20.410 1 272 3.8E-59 T 28-03-2018 IPR002763 Protein of unknown function DUF72 AM348_RS15105 57e208d4db2eba21609df5f7a49cfd5b 272 SUPERFAMILY SSF117396 1 252 6.28E-63 T 28-03-2018 IPR002763 Protein of unknown function DUF72 AM348_RS15105 57e208d4db2eba21609df5f7a49cfd5b 272 Pfam PF01904 Protein of unknown function DUF72 21 248 7.2E-50 T 28-03-2018 IPR002763 Protein of unknown function DUF72 AM348_RS18225 da78e2707dac257e4446d3e97f27b2c5 199 Gene3D G3DSA:1.10.357.10 61 195 2.7E-24 T 28-03-2018 AM348_RS18225 da78e2707dac257e4446d3e97f27b2c5 199 Gene3D G3DSA:1.10.10.60 7 60 4.1E-13 T 28-03-2018 AM348_RS18225 da78e2707dac257e4446d3e97f27b2c5 199 SUPERFAMILY SSF46689 7 77 3.08E-14 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS18225 da78e2707dac257e4446d3e97f27b2c5 199 Pfam PF16925 Bacterial transcriptional repressor C-terminal 84 189 6.9E-12 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS18225 da78e2707dac257e4446d3e97f27b2c5 199 SUPERFAMILY SSF48498 81 194 1.33E-23 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS18225 da78e2707dac257e4446d3e97f27b2c5 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 1.2E-9 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 SUPERFAMILY SSF69737 71 138 2.09E-22 T 28-03-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 Gene3D G3DSA:3.30.70.790 72 152 1.0E-32 T 28-03-2018 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 SMART SM00988 1 64 8.2E-21 T 28-03-2018 IPR004029 UreE urease accessory, N-terminal AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 Gene3D G3DSA:2.60.260.20 1 71 2.1E-21 T 28-03-2018 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 PIRSF PIRSF036402 3 150 4.3E-47 T 28-03-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 139 24.175 T 28-03-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 Pfam PF02814 UreE urease accessory protein, N-terminal domain 14 64 3.0E-13 T 28-03-2018 IPR004029 UreE urease accessory, N-terminal AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 Pfam PF05194 UreE urease accessory protein, C-terminal domain 72 152 8.3E-29 T 28-03-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 AM348_RS08645 d33af726e9aa7db9f56128c685053996 152 SUPERFAMILY SSF69287 1 71 1.09E-17 T 28-03-2018 IPR004029 UreE urease accessory, N-terminal AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 524 7.3E-19 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 Gene3D G3DSA:3.30.300.30 431 535 4.1E-28 T 28-03-2018 AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 Pfam PF00501 AMP-binding enzyme 32 438 1.1E-98 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 SUPERFAMILY SSF56801 24 534 1.44E-141 T 28-03-2018 AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 Gene3D G3DSA:3.40.50.980 22 197 5.8E-37 T 28-03-2018 AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 Gene3D G3DSA:3.40.50.980 198 349 6.0E-41 T 28-03-2018 AM348_RS18770 e1305efee8cafee52fbef7a84dbfd62c 545 Gene3D G3DSA:2.30.38.10 350 430 9.2E-23 T 28-03-2018 AM348_RS07955 d89fe773c2bebb982431ec17672be826 188 PIRSF PIRSF006118 13 188 2.3E-73 T 28-03-2018 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS07955 d89fe773c2bebb982431ec17672be826 188 Gene3D G3DSA:3.40.50.1000 2 188 9.4E-26 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07955 d89fe773c2bebb982431ec17672be826 188 SUPERFAMILY SSF56784 22 181 7.64E-41 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07955 d89fe773c2bebb982431ec17672be826 188 Pfam PF08282 haloacid dehalogenase-like hydrolase 94 158 2.8E-9 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07955 d89fe773c2bebb982431ec17672be826 188 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 27 178 1.4E-74 T 28-03-2018 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS00370 52a324af31760478385ad682506224fb 231 SUPERFAMILY SSF49354 22 126 8.11E-9 T 28-03-2018 IPR008962 PapD-like AM348_RS00370 52a324af31760478385ad682506224fb 231 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 153 3.0E-5 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS00370 52a324af31760478385ad682506224fb 231 Gene3D G3DSA:2.60.40.10 26 151 2.5E-14 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS14545 25f5217bd72907ea3ae25686660513c6 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 28-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AM348_RS14545 25f5217bd72907ea3ae25686660513c6 182 PIRSF PIRSF000847 1 178 4.6E-43 T 28-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM348_RS14545 25f5217bd72907ea3ae25686660513c6 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 2.3E-17 T 28-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AM348_RS14545 25f5217bd72907ea3ae25686660513c6 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 181 1.8E-64 T 28-03-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM348_RS14545 25f5217bd72907ea3ae25686660513c6 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 34.551 T 28-03-2018 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 AM348_RS13935 2056703188398911c72546a2de067333 192 Gene3D G3DSA:3.30.70.20 2 22 0.0032 T 28-03-2018 AM348_RS13935 2056703188398911c72546a2de067333 192 SUPERFAMILY SSF54862 8 157 5.02E-61 T 28-03-2018 AM348_RS13935 2056703188398911c72546a2de067333 192 Gene3D G3DSA:3.30.70.20 116 181 9.8E-18 T 28-03-2018 AM348_RS13935 2056703188398911c72546a2de067333 192 Pfam PF13247 4Fe-4S dicluster domain 57 153 2.7E-24 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS13935 2056703188398911c72546a2de067333 192 Gene3D G3DSA:3.30.70.20 77 115 5.9E-22 T 28-03-2018 AM348_RS13935 2056703188398911c72546a2de067333 192 Gene3D G3DSA:3.30.70.20 23 76 4.0E-13 T 28-03-2018 AM348_RS13935 2056703188398911c72546a2de067333 192 Pfam PF12800 4Fe-4S binding domain 15 28 0.0053 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS13935 2056703188398911c72546a2de067333 192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 96 107 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 1.6E-52 T 28-03-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 SUPERFAMILY SSF48557 10 454 1.16E-106 T 28-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 Gene3D G3DSA:1.10.40.30 391 445 5.0E-32 T 28-03-2018 AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 1.8E-156 T 28-03-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 Gene3D G3DSA:1.20.200.10 118 390 3.9E-83 T 28-03-2018 AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 2.0E-17 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.0E-17 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 2.0E-17 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 2.0E-17 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 Gene3D G3DSA:1.10.275.10 1 117 6.2E-43 T 28-03-2018 IPR024083 Fumarase/histidase, N-terminal AM348_RS19395 48e38eb4482c5d3fd75859442916bbb6 456 Pfam PF00206 Lyase 14 312 2.6E-83 T 28-03-2018 IPR022761 Fumarate lyase, N-terminal AM348_RS22515 40a1f85f9167b1620829d1a6097e9c32 383 SUPERFAMILY SSF51735 2 153 7.38E-46 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22515 40a1f85f9167b1620829d1a6097e9c32 383 Gene3D G3DSA:3.40.50.720 1 142 7.5E-39 T 28-03-2018 AM348_RS22515 40a1f85f9167b1620829d1a6097e9c32 383 Gene3D G3DSA:3.30.360.10 143 383 2.3E-41 T 28-03-2018 AM348_RS22515 40a1f85f9167b1620829d1a6097e9c32 383 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 202 8.0E-6 T 28-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS22515 40a1f85f9167b1620829d1a6097e9c32 383 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 119 2.7E-24 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS22515 40a1f85f9167b1620829d1a6097e9c32 383 SUPERFAMILY SSF55347 128 327 8.18E-30 T 28-03-2018 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Pfam PF00750 tRNA synthetases class I (R) 95 446 5.1E-176 T 28-03-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 SMART SM00836 460 577 1.9E-35 T 28-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 9.2E-22 T 28-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 SMART SM01016 5 87 9.0E-29 T 28-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 577 2.5E-215 T 28-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Pfam PF05746 DALR anticodon binding domain 460 577 2.1E-34 T 28-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 SUPERFAMILY SSF52374 110 454 4.93E-98 T 28-03-2018 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 SUPERFAMILY SSF55190 2 98 1.01E-22 T 28-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Gene3D G3DSA:3.40.50.620 107 440 4.2E-61 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 SUPERFAMILY SSF47323 454 577 2.03E-34 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 577 29.066 T 28-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Gene3D G3DSA:1.10.730.10 441 577 8.7E-45 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 7.4E-26 T 28-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 7.4E-26 T 28-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 7.4E-26 T 28-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 7.4E-26 T 28-03-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS15075 2eb3c42254e5b7cc35bf871a56cb2fc1 577 Gene3D G3DSA:3.30.1360.70 1 106 5.7E-29 T 28-03-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 Gene3D G3DSA:3.40.190.10 179 263 4.8E-16 T 28-03-2018 AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 Gene3D G3DSA:1.10.10.10 1 87 1.7E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 Pfam PF03466 LysR substrate binding domain 92 296 3.0E-32 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 SUPERFAMILY SSF46785 5 114 5.69E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 SUPERFAMILY SSF53850 93 301 2.9E-38 T 28-03-2018 AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 Gene3D G3DSA:3.40.190.10 92 178 1.1E-9 T 28-03-2018 AM348_RS02035 7d7f333c5d7917f4fe2215615f9d8288 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.8E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00445 0806c7b027f420c665ce5573a969042e 255 Pfam PF13230 Glutamine amidotransferases class-II 1 252 1.2E-113 T 28-03-2018 IPR026869 Putative glutamine amidotransferase type 2 AM348_RS00445 0806c7b027f420c665ce5573a969042e 255 Gene3D G3DSA:3.60.20.10 1 255 4.1E-46 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS00445 0806c7b027f420c665ce5573a969042e 255 SUPERFAMILY SSF56235 2 253 3.38E-52 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.4E-26 T 28-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Gene3D G3DSA:2.40.50.140 131 186 4.7E-28 T 28-03-2018 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 SUPERFAMILY SSF50249 130 187 6.0E-19 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 8.2E-76 T 28-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 28-03-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Gene3D G3DSA:2.40.50.140 67 129 2.0E-24 T 28-03-2018 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 7 61 1.4E-23 T 28-03-2018 IPR013185 Translation elongation factor, KOW-like AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 5.8E-21 T 28-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 SUPERFAMILY SSF50249 68 128 3.38E-17 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 SMART SM00841 131 186 2.2E-33 T 28-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 PIRSF PIRSF005901 2 188 2.7E-66 T 28-03-2018 IPR020599 Translation elongation factor P/YeiP AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 50.276 T 28-03-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 SUPERFAMILY SSF50104 3 63 2.35E-17 T 28-03-2018 IPR008991 Translation protein SH3-like domain AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 Gene3D G3DSA:2.30.30.30 4 63 3.2E-24 T 28-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM348_RS03020 a3f10cbe50c0c6ec50cab2f552ac49c5 188 SMART SM01185 69 123 1.0E-24 T 28-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 Gene3D G3DSA:1.10.3810.10 42 243 1.5E-57 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 SUPERFAMILY SSF53955 39 258 1.12E-64 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 SUPERFAMILY SSF56601 208 638 7.8E-93 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 685 767 3.1E-17 T 28-03-2018 IPR009647 Penicillin-binding, C-terminal AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 Pfam PF00912 Transglycosylase 61 226 1.2E-49 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 37 770 1.8E-263 T 28-03-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 Pfam PF00905 Penicillin binding protein transpeptidase domain 304 519 6.9E-10 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS11565 886faf76434c89753aa14afbe9188fdc 770 Gene3D G3DSA:3.40.710.10 264 605 1.2E-64 T 28-03-2018 AM348_RS02935 93aaa3217a9838a5aeb1cadb6184b805 181 Gene3D G3DSA:3.30.420.10 2 181 2.0E-26 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS02935 93aaa3217a9838a5aeb1cadb6184b805 181 SMART SM00479 7 180 2.6E-21 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS02935 93aaa3217a9838a5aeb1cadb6184b805 181 Pfam PF00929 Exonuclease 9 170 9.0E-37 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS02935 93aaa3217a9838a5aeb1cadb6184b805 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 45.111 T 28-03-2018 IPR022894 Oligoribonuclease GO:0000175 AM348_RS02935 93aaa3217a9838a5aeb1cadb6184b805 181 SUPERFAMILY SSF53098 3 180 1.52E-48 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 Pfam PF00731 AIR carboxylase 9 157 1.1E-63 T 28-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 SMART SM01001 8 159 7.6E-103 T 28-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 PIRSF PIRSF001338 5 166 5.0E-67 T 28-03-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 SUPERFAMILY SSF52255 7 165 3.79E-67 T 28-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 10 163 32.314 T 28-03-2018 IPR033747 Class I PurE AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 Gene3D G3DSA:3.40.50.7700 1 165 5.5E-66 T 28-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM348_RS22775 0d0880b84c83d758e5752fed523d5b23 169 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 10 163 2.0E-66 T 28-03-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 AM348_RS10700 e223db179b3443449e96205adbbee919 427 Gene3D G3DSA:3.90.1150.10 307 427 4.7E-30 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS10700 e223db179b3443449e96205adbbee919 427 SUPERFAMILY SSF53383 20 423 6.38E-135 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS10700 e223db179b3443449e96205adbbee919 427 Pfam PF00202 Aminotransferase class-III 17 420 5.4E-146 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS10700 e223db179b3443449e96205adbbee919 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 273 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS10700 e223db179b3443449e96205adbbee919 427 Gene3D G3DSA:3.40.640.10 180 306 8.4E-46 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS10700 e223db179b3443449e96205adbbee919 427 Gene3D G3DSA:3.90.1150.10 1 156 2.0E-41 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS10700 e223db179b3443449e96205adbbee919 427 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 9 421 7.2E-163 T 28-03-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AM348_RS10700 e223db179b3443449e96205adbbee919 427 PIRSF PIRSF000521 27 131 0.0048 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS10700 e223db179b3443449e96205adbbee919 427 PIRSF PIRSF000521 122 424 1.4E-44 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS05450 4caa0a95c6ae7a2b9b3575928ec708e2 142 SUPERFAMILY SSF49764 29 134 2.76E-19 T 28-03-2018 IPR008978 HSP20-like chaperone AM348_RS05450 4caa0a95c6ae7a2b9b3575928ec708e2 142 Gene3D G3DSA:2.60.40.790 5 135 1.0E-20 T 28-03-2018 IPR008978 HSP20-like chaperone AM348_RS05450 4caa0a95c6ae7a2b9b3575928ec708e2 142 Hamap MF_02001 Small heat shock protein IbpB [ibpB]. 1 142 45.677 T 28-03-2018 IPR022848 Small heat shock protein IbpB AM348_RS05450 4caa0a95c6ae7a2b9b3575928ec708e2 142 Pfam PF00011 Hsp20/alpha crystallin family 39 135 3.5E-20 T 28-03-2018 IPR002068 Alpha crystallin/Hsp20 domain AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 Gene3D G3DSA:1.10.10.10 7 82 9.4E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 Pfam PF07729 FCD domain 106 225 3.0E-8 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 SMART SM00345 20 81 3.1E-12 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 75 3.7E-16 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 6.8E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 6.8E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 SMART SM00895 105 226 0.0012 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 SUPERFAMILY SSF46785 11 83 2.07E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 Gene3D G3DSA:1.20.120.530 90 236 8.5E-12 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS18505 ea4478eb700e68e99715ade6c94c2549 241 SUPERFAMILY SSF48008 103 227 3.66E-8 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS12665 2bb722ccd9b5bb8e3f6409064f59f633 432 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 430 29.845 T 28-03-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AM348_RS12665 2bb722ccd9b5bb8e3f6409064f59f633 432 SUPERFAMILY SSF56322 13 428 5.23E-99 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS12665 2bb722ccd9b5bb8e3f6409064f59f633 432 Pfam PF00425 chorismate binding enzyme 169 420 2.9E-61 T 28-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM348_RS12665 2bb722ccd9b5bb8e3f6409064f59f633 432 Gene3D G3DSA:3.60.120.10 1 431 1.2E-90 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS12665 2bb722ccd9b5bb8e3f6409064f59f633 432 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 93 427 9.3E-109 T 28-03-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 Pfam PF02056 Family 4 glycosyl hydrolase 6 187 8.7E-78 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 SUPERFAMILY SSF51735 4 167 2.37E-57 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 28-03-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 194 206 1.3E-51 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 Gene3D G3DSA:3.40.50.720 2 169 4.5E-29 T 28-03-2018 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 SUPERFAMILY SSF56327 173 443 5.83E-77 T 28-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 199 415 5.7E-35 T 28-03-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AM348_RS18945 d94638578a62bdc0134885814e6e316d 451 Gene3D G3DSA:3.90.110.10 171 449 1.3E-68 T 28-03-2018 AM348_RS22640 67aa9207d0cebedc3aa69c21ea0a1cf8 364 Gene3D G3DSA:1.10.3820.10 1 166 2.6E-25 T 28-03-2018 AM348_RS22640 67aa9207d0cebedc3aa69c21ea0a1cf8 364 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 4 174 6.7E-66 T 28-03-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AM348_RS22640 67aa9207d0cebedc3aa69c21ea0a1cf8 364 PIRSF PIRSF000014 1 364 3.7E-139 T 28-03-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 AM348_RS22640 67aa9207d0cebedc3aa69c21ea0a1cf8 364 Gene3D G3DSA:1.10.1130.10 167 342 4.7E-7 T 28-03-2018 AM348_RS22640 67aa9207d0cebedc3aa69c21ea0a1cf8 364 SUPERFAMILY SSF48695 14 178 7.69E-49 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 Pfam PF14559 Tetratricopeptide repeat 125 190 1.4E-21 T 28-03-2018 AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 Gene3D G3DSA:3.40.30.10 1 122 1.4E-28 T 28-03-2018 AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 SUPERFAMILY SSF52833 2 112 1.39E-30 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 Pfam PF14561 Tetratricopeptide repeat 195 284 4.4E-28 T 28-03-2018 AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 SUPERFAMILY SSF48452 119 246 7.59E-8 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 Gene3D G3DSA:1.25.40.10 123 196 1.8E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 Pfam PF00085 Thioredoxin 6 108 1.1E-18 T 28-03-2018 IPR013766 Thioredoxin domain GO:0045454 AM348_RS22830 3a0643468fd04a651cb9c6b3786be3f9 284 Gene3D G3DSA:1.25.40.10 197 284 4.3E-4 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS04525 df22e1d01a6bbf1279bc2c582fcd3c83 309 PIRSF PIRSF018296 1 309 2.7E-138 T 28-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM348_RS04525 df22e1d01a6bbf1279bc2c582fcd3c83 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 22 304 1.7E-117 T 28-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM348_RS04525 df22e1d01a6bbf1279bc2c582fcd3c83 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 305 6.4E-152 T 28-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM348_RS04525 df22e1d01a6bbf1279bc2c582fcd3c83 309 SUPERFAMILY SSF144020 24 306 6.15E-100 T 28-03-2018 IPR024064 FdhE-like AM348_RS04525 df22e1d01a6bbf1279bc2c582fcd3c83 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 306 50.413 T 28-03-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 AM348_RS04525 df22e1d01a6bbf1279bc2c582fcd3c83 309 Gene3D G3DSA:3.90.1670.10 24 308 3.2E-102 T 28-03-2018 IPR024064 FdhE-like AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Gene3D G3DSA:3.30.450.20 323 472 6.3E-7 T 28-03-2018 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SUPERFAMILY SSF52172 824 946 1.21E-38 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 690 1.4E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Gene3D G3DSA:1.10.287.130 473 528 6.7E-19 T 28-03-2018 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SMART SM00448 825 936 6.5E-38 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 645 5.5E-18 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 631 5.5E-18 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 670 5.5E-18 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 676 689 5.5E-18 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Gene3D G3DSA:3.40.50.2300 818 948 1.5E-40 T 28-03-2018 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 709 799 1.3E-32 T 28-03-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0004871|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 941 26.86 T 28-03-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021|GO:0042710 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SUPERFAMILY SSF47384 453 535 1.96E-19 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SMART SM00388 469 534 5.9E-20 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SUPERFAMILY SSF52172 701 816 6.71E-39 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SMART SM00387 581 692 1.4E-37 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 SUPERFAMILY SSF55874 523 692 8.91E-48 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Gene3D G3DSA:3.30.565.10 529 692 5.9E-47 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Pfam PF00512 His Kinase A (phospho-acceptor) domain 469 533 5.0E-16 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS12815 d4b6b83a387bf8d8b7165dc1e89f5b4d 948 Pfam PF00072 Response regulator receiver domain 827 936 2.9E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 Gene3D G3DSA:2.40.50.100 47 151 7.9E-12 T 28-03-2018 AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 Pfam PF13437 HlyD family secretion protein 156 251 4.0E-8 T 28-03-2018 AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 310 60.269 T 28-03-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 290 5.3E-31 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 Pfam PF13533 Biotin-lipoyl like 47 94 2.2E-18 T 28-03-2018 AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 Gene3D G3DSA:2.40.50.100 152 268 8.6E-4 T 28-03-2018 AM348_RS07760 11dea6544e8ea240c42b4fa86e77d533 310 SUPERFAMILY SSF111369 46 216 1.7E-21 T 28-03-2018 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 SUPERFAMILY SSF63380 227 446 1.33E-64 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Gene3D G3DSA:2.40.30.10 221 438 7.9E-48 T 28-03-2018 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00369 Flavodoxin signature 65 78 3.1E-14 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00369 Flavodoxin signature 113 124 3.1E-14 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00369 Flavodoxin signature 145 155 3.1E-14 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00369 Flavodoxin signature 169 188 3.1E-14 T 28-03-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PIRSF PIRSF000207 1 599 3.8E-280 T 28-03-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 599 9.0E-282 T 28-03-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 SUPERFAMILY SSF52218 60 208 3.24E-43 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 SUPERFAMILY SSF52343 444 599 3.4E-52 T 28-03-2018 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Gene3D G3DSA:3.40.50.80 442 598 4.3E-36 T 28-03-2018 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Pfam PF00175 Oxidoreductase NAD-binding domain 457 563 1.5E-21 T 28-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 494 505 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 548 556 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 386 393 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 525 541 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 456 475 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 270 280 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 481 490 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 419 428 6.1E-30 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Pfam PF00667 FAD binding domain 230 424 7.9E-26 T 28-03-2018 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Pfam PF00258 Flavodoxin 67 193 7.5E-31 T 28-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Gene3D G3DSA:3.40.50.360 46 220 9.2E-38 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10065 b364870ddae545903b1672f0fb621e7d 599 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 599 52.864 T 28-03-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 AM348_RS07330 0e7169f02f8959dc8d1e53b016964013 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 86 97 5.2E-16 T 28-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM348_RS07330 0e7169f02f8959dc8d1e53b016964013 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 98 113 5.2E-16 T 28-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM348_RS07330 0e7169f02f8959dc8d1e53b016964013 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 18 35 5.2E-16 T 28-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM348_RS07330 0e7169f02f8959dc8d1e53b016964013 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 75 85 5.2E-16 T 28-03-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial AM348_RS07330 0e7169f02f8959dc8d1e53b016964013 155 Pfam PF01478 Type IV leader peptidase family 10 113 1.8E-23 T 28-03-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 11 501 2.1E-108 T 28-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 Gene3D G3DSA:1.20.1250.20 287 513 2.0E-16 T 28-03-2018 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 SUPERFAMILY SSF103473 12 312 8.5E-24 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 79 103 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 Pfam PF00854 POT family 91 463 1.3E-62 T 28-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 Gene3D G3DSA:1.20.1250.20 10 215 8.8E-25 T 28-03-2018 AM348_RS11615 751d3a050b0ce05bc90acc9980abbd94 513 SUPERFAMILY SSF103473 321 498 4.19E-11 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Gene3D G3DSA:1.10.940.10 1 145 5.4E-31 T 28-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 429 1.7E-177 T 28-03-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Gene3D G3DSA:3.30.70.1170 173 230 1.6E-16 T 28-03-2018 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 SUPERFAMILY SSF48013 6 149 1.18E-33 T 28-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 28-03-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Pfam PF01029 NusB family 7 127 1.4E-23 T 28-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 70.006 T 28-03-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Gene3D G3DSA:1.10.287.730 146 172 1.3E-14 T 28-03-2018 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 SUPERFAMILY SSF53335 141 429 2.26E-76 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Gene3D G3DSA:3.40.50.150 231 429 3.0E-52 T 28-03-2018 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 426 5.0E-75 T 28-03-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 5.3E-31 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 5.3E-31 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 5.3E-31 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 5.3E-31 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS07500 5a60ea4967a38d306b33203466d5a53d 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 5.3E-31 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 1.9E-46 T 28-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 28-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 28-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 PIRSF PIRSF000429 1 401 8.5E-136 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 28-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 Gene3D G3DSA:3.40.47.10 272 398 7.5E-35 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 SUPERFAMILY SSF53901 3 276 3.24E-80 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 4.8E-138 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 Gene3D G3DSA:3.40.47.10 1 271 4.3E-54 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 2 401 5.7E-218 T 28-03-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 Pfam PF00108 Thiolase, N-terminal domain 5 269 2.6E-75 T 28-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM348_RS19565 602030c559bfa1d0e1a19a3244945b64 401 SUPERFAMILY SSF53901 277 400 7.56E-46 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 Pfam PF00005 ABC transporter 18 162 1.7E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 Gene3D G3DSA:3.10.580.10 243 314 8.6E-4 T 28-03-2018 AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 SMART SM00382 26 212 3.1E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 SUPERFAMILY SSF52540 1 239 4.79E-75 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 Gene3D G3DSA:3.40.50.300 1 241 1.5E-72 T 28-03-2018 AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 SUPERFAMILY SSF54631 267 310 4.45E-5 T 28-03-2018 AM348_RS13335 444a520b2f1a08cd3a57f1540f788763 315 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22360 296fc8f85fbc605c43624fe6809b675c 411 Pfam PF05977 Transmembrane secretion effector 16 404 6.9E-20 T 28-03-2018 IPR010290 Transmembrane secretion effector AM348_RS22360 296fc8f85fbc605c43624fe6809b675c 411 SUPERFAMILY SSF103473 16 404 1.02E-40 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS22360 296fc8f85fbc605c43624fe6809b675c 411 Hamap MF_01436 Enterobactin exporter EntS [entS]. 1 410 43.06 T 28-03-2018 IPR023722 Enterobactin exporter, EntS GO:0005886|GO:0042930|GO:0042931 AM348_RS22360 296fc8f85fbc605c43624fe6809b675c 411 Gene3D G3DSA:1.20.1250.20 211 408 1.3E-14 T 28-03-2018 AM348_RS22360 296fc8f85fbc605c43624fe6809b675c 411 Gene3D G3DSA:1.20.1250.20 10 210 3.1E-22 T 28-03-2018 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 88 - T 28-03-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 Pfam PF01872 RibD C-terminal domain 147 362 3.9E-62 T 28-03-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 7 362 1.3E-154 T 28-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 Gene3D G3DSA:3.40.430.10 125 365 5.1E-70 T 28-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 Gene3D G3DSA:3.40.140.10 1 124 4.9E-34 T 28-03-2018 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 SUPERFAMILY SSF53597 144 362 8.98E-59 T 28-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 99 9.9E-23 T 28-03-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 SUPERFAMILY SSF53927 3 145 1.27E-49 T 28-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 PIRSF PIRSF006769 1 367 2.6E-139 T 28-03-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 AM348_RS23325 fc8ffc5ae786effdf639b009836618bc 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 146 365 1.2E-79 T 28-03-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 Gene3D G3DSA:3.90.230.10 1 261 2.8E-87 T 28-03-2018 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 28-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.38 T 28-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 SUPERFAMILY SSF55920 3 255 1.1E-91 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 Pfam PF00557 Metallopeptidase family M24 12 242 7.5E-53 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 8.6E-108 T 28-03-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 1.2E-22 T 28-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 1.2E-22 T 28-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 1.2E-22 T 28-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS00780 a8c31eab8c8ed25a55b23e420db015bd 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 1.2E-22 T 28-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.1E-61 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 253 7.5E-101 T 28-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 Gene3D G3DSA:3.40.190.10 14 140 1.3E-35 T 28-03-2018 AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 SUPERFAMILY SSF53850 26 257 1.36E-65 T 28-03-2018 AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 SMART SM00062 27 256 2.1E-77 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS12470 513a7c28e0861e167e1c24d4c838c984 260 Gene3D G3DSA:3.40.190.10 141 259 3.4E-15 T 28-03-2018 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 4 1293 0.0 T 28-03-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Pfam PF02769 AIR synthase related protein, C-terminal domain 432 588 2.3E-26 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Pfam PF02769 AIR synthase related protein, C-terminal domain 832 967 7.2E-14 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF56042 818 1033 5.38E-57 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Gene3D G3DSA:3.30.1330.10 612 813 8.7E-22 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Gene3D G3DSA:3.30.1330.10 221 425 2.4E-50 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Gene3D G3DSA:3.30.1330.10 183 220 3.9E-4 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF55326 618 816 2.62E-67 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF52317 1035 1293 2.98E-99 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Gene3D G3DSA:3.40.50.880 1038 1294 1.9E-31 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 2 1295 21.573 T 28-03-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF55326 221 428 9.07E-65 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF82697 1 152 1.73E-53 T 28-03-2018 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF109736 156 220 2.48E-21 T 28-03-2018 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SUPERFAMILY SSF56042 432 615 8.97E-53 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1039 1292 3.1E-103 T 28-03-2018 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 SMART SM01211 1039 1294 9.6E-157 T 28-03-2018 AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Gene3D G3DSA:3.90.650.10 426 609 2.1E-29 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11350 5096ce5563b439a44ed96ecd85651f11 1295 Gene3D G3DSA:3.90.650.10 822 994 2.1E-32 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS19190 e402d8a11fcd3334071d06cbf28888e3 248 Gene3D G3DSA:2.40.160.20 8 248 6.6E-18 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS19190 e402d8a11fcd3334071d06cbf28888e3 248 Pfam PF06629 MltA-interacting protein MipA 28 248 3.6E-51 T 28-03-2018 IPR010583 MltA-interacting MipA AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 SUPERFAMILY SSF55021 53 132 3.89E-26 T 28-03-2018 AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 SUPERFAMILY SSF47598 1 45 8.89E-12 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 Gene3D G3DSA:3.30.70.1150 37 127 4.0E-31 T 28-03-2018 AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 Hamap MF_00476 Nickel-responsive regulator [nikR]. 1 131 27.553 T 28-03-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 TIGRFAM TIGR02793 nikR: nickel-responsive transcriptional regulator NikR 2 130 7.4E-66 T 28-03-2018 IPR014160 Nickel-responsive transcriptional regulator NikR, proteobacteria GO:0010045|GO:0016151 AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 42 6.1E-11 T 28-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 Pfam PF08753 NikR C terminal nickel binding domain 54 127 1.3E-27 T 28-03-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal AM348_RS06560 ec66cdc469d3672d4c80563cd9fdc383 133 Gene3D G3DSA:1.10.1220.10 2 36 2.2E-13 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS18235 e87094b996a86f6589c65d24ffb01975 135 SUPERFAMILY SSF54593 1 128 1.06E-34 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS18235 e87094b996a86f6589c65d24ffb01975 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 6.1E-25 T 28-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM348_RS18235 e87094b996a86f6589c65d24ffb01975 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 133 2.1E-69 T 28-03-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM348_RS18235 e87094b996a86f6589c65d24ffb01975 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 28-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM348_RS18235 e87094b996a86f6589c65d24ffb01975 135 Gene3D G3DSA:3.10.180.10 1 134 7.1E-37 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS18235 e87094b996a86f6589c65d24ffb01975 135 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 28-03-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 AM348_RS11650 4751ce900792d5b2b35caaeee578da6a 67 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 1 50 5.0E-19 T 28-03-2018 IPR022576 Protein of unknown function DUF2633 AM348_RS11650 4751ce900792d5b2b35caaeee578da6a 67 Pfam PF11119 Protein of unknown function (DUF2633) 9 63 1.4E-29 T 28-03-2018 IPR022576 Protein of unknown function DUF2633 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.4E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 Gene3D G3DSA:3.40.50.2300 177 307 4.2E-48 T 28-03-2018 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 SMART SM00354 1 71 2.9E-33 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 Pfam PF13377 Periplasmic binding protein-like domain 169 330 4.6E-42 T 28-03-2018 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 Gene3D G3DSA:1.10.260.40 2 54 1.0E-20 T 28-03-2018 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.2E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.2E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 SUPERFAMILY SSF53822 60 330 7.97E-91 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS05180 f51039dca03127034256cfd1d33340df 330 SUPERFAMILY SSF47413 2 59 1.56E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS05180 f51039dca03127034256cfd1d33340df 330 Gene3D G3DSA:3.40.50.2300 55 176 2.3E-30 T 28-03-2018 AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 SUPERFAMILY SSF52172 1 131 4.41E-37 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 Gene3D G3DSA:3.40.50.2300 1 123 3.6E-35 T 28-03-2018 AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 SUPERFAMILY SSF46894 129 218 6.52E-19 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 217 7.8E-19 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 SMART SM00448 1 112 6.9E-39 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 Gene3D G3DSA:1.10.10.10 124 223 9.1E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 SMART SM00862 144 217 4.5E-18 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS10745 3af8b97745406cc15b07440773aeffce 224 Pfam PF00072 Response regulator receiver domain 4 112 1.7E-25 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 85 110 - T 28-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 SUPERFAMILY SSF51604 98 388 2.49E-80 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 Gene3D G3DSA:3.20.20.120 101 377 4.2E-62 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 14 110 7.8E-35 T 28-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 Gene3D G3DSA:3.30.390.10 4 100 1.7E-30 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 SUPERFAMILY SSF54826 1 112 1.56E-33 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 Pfam PF13378 Enolase C-terminal domain-like 142 379 6.5E-43 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 209 240 - T 28-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM348_RS17825 aae3ad9515c4db6829682ffb1903ac20 404 SMART SM00922 128 259 2.1E-16 T 28-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM348_RS15650 3f6f70da73d8e50c4061690af8df783f 243 SUPERFAMILY SSF46955 3 87 4.07E-20 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS15650 3f6f70da73d8e50c4061690af8df783f 243 Pfam PF13411 MerR HTH family regulatory protein 4 71 5.2E-19 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS15650 3f6f70da73d8e50c4061690af8df783f 243 SMART SM00422 4 73 1.0E-28 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS15650 3f6f70da73d8e50c4061690af8df783f 243 Gene3D G3DSA:1.10.1660.10 1 162 5.7E-26 T 28-03-2018 AM348_RS15650 3f6f70da73d8e50c4061690af8df783f 243 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 30 - T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 SUPERFAMILY SSF51182 26 158 1.73E-14 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 Gene3D G3DSA:1.10.10.60 205 229 0.0032 T 28-03-2018 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 SMART SM00342 189 272 5.0E-23 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 Pfam PF12833 Helix-turn-helix domain 201 273 5.4E-18 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 Pfam PF07883 Cupin domain 29 81 2.6E-8 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 SUPERFAMILY SSF46689 225 275 1.48E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 Gene3D G3DSA:2.60.120.280 9 204 1.1E-13 T 28-03-2018 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 Gene3D G3DSA:1.10.10.60 230 280 2.1E-11 T 28-03-2018 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 5.8E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS18950 11627c2c13fa9d774d8ed0c87619d2be 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 5.8E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 SMART SM00855 5 191 2.3E-26 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 PIRSF PIRSF000709 167 237 0.049 T 28-03-2018 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 PIRSF PIRSF000709 3 116 6.0E-9 T 28-03-2018 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 9.4E-30 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 28-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.433 T 28-03-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 5.0E-129 T 28-03-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 SUPERFAMILY SSF53254 4 247 1.78E-77 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS21480 208d85e822ec9b3287c1fee793a2a377 250 Gene3D G3DSA:3.40.50.1240 2 250 3.5E-66 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS05250 e517ecb7b9d65d48805077d284876ef7 126 Pfam PF03899 ATP synthase I chain 13 108 1.5E-15 T 28-03-2018 IPR005598 ATP synthase protein I AM348_RS00450 8dd9fc3cbb93252c60792b30b82a7eb8 193 Pfam PF13580 SIS domain 14 146 8.1E-32 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS00450 8dd9fc3cbb93252c60792b30b82a7eb8 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 1.3E-84 T 28-03-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 AM348_RS00450 8dd9fc3cbb93252c60792b30b82a7eb8 193 Gene3D G3DSA:3.40.50.10490 1 192 1.3E-41 T 28-03-2018 AM348_RS00450 8dd9fc3cbb93252c60792b30b82a7eb8 193 SUPERFAMILY SSF53697 1 189 1.17E-51 T 28-03-2018 AM348_RS00450 8dd9fc3cbb93252c60792b30b82a7eb8 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.82 T 28-03-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 AM348_RS10855 e113c15d1c2b81b344c103f2b9125d74 404 TIGRFAM TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase 21 397 1.6E-176 T 28-03-2018 IPR019871 Diaminopropionate ammonia-lyase, subgroup GO:0008838 AM348_RS10855 e113c15d1c2b81b344c103f2b9125d74 404 Gene3D G3DSA:3.40.50.1100 2 185 2.3E-32 T 28-03-2018 AM348_RS10855 e113c15d1c2b81b344c103f2b9125d74 404 Gene3D G3DSA:3.40.50.1100 186 383 1.1E-23 T 28-03-2018 AM348_RS10855 e113c15d1c2b81b344c103f2b9125d74 404 SUPERFAMILY SSF53686 36 348 1.31E-54 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS10855 e113c15d1c2b81b344c103f2b9125d74 404 TIGRFAM TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family 25 395 3.0E-162 T 28-03-2018 IPR010081 Diaminopropionate ammonia-lyase GO:0008838|GO:0030170 AM348_RS10855 e113c15d1c2b81b344c103f2b9125d74 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 41 349 2.4E-49 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SMART SM00564 220 251 3.2E-6 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SMART SM00564 401 458 310.0 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SMART SM00564 715 748 0.04 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SMART SM00564 479 512 530.0 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SMART SM00564 339 380 0.0045 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SMART SM00564 282 314 830.0 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 404 425 - T 28-03-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 167 195 - T 28-03-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SUPERFAMILY SSF50998 557 792 2.22E-157 T 28-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 SUPERFAMILY SSF50998 162 521 2.22E-157 T 28-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Gene3D G3DSA:2.140.10.10 158 608 6.6E-87 T 28-03-2018 AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Pfam PF01011 PQQ enzyme repeat 442 468 1.0E-6 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Pfam PF01011 PQQ enzyme repeat 362 387 1.3E-4 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Pfam PF01011 PQQ enzyme repeat 290 320 7.1E-5 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Pfam PF01011 PQQ enzyme repeat 721 758 4.0E-6 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Pfam PF01011 PQQ enzyme repeat 225 260 3.7E-8 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Pfam PF01011 PQQ enzyme repeat 664 696 1.7E-6 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 15 792 0.0 T 28-03-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 AM348_RS01010 2dce385285decacab002a62c01e4acbb 796 Gene3D G3DSA:2.140.10.10 669 789 1.3E-13 T 28-03-2018 AM348_RS02280 880da0d55f7254c571e348da9cea97e1 326 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 234 326 5.4E-43 T 28-03-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS02280 880da0d55f7254c571e348da9cea97e1 326 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 4 179 3.1E-51 T 28-03-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS13685 0e28cef0e56e53e84fe94014b8b01f82 379 Pfam PF10531 SLBB domain 173 220 1.9E-7 T 28-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13685 0e28cef0e56e53e84fe94014b8b01f82 379 Gene3D G3DSA:1.20.5.70 347 376 3.4E-15 T 28-03-2018 AM348_RS13685 0e28cef0e56e53e84fe94014b8b01f82 379 Gene3D G3DSA:3.30.1950.10 89 160 1.3E-24 T 28-03-2018 AM348_RS13685 0e28cef0e56e53e84fe94014b8b01f82 379 Gene3D G3DSA:3.10.560.10 161 251 1.8E-25 T 28-03-2018 AM348_RS13685 0e28cef0e56e53e84fe94014b8b01f82 379 Gene3D G3DSA:3.10.560.10 252 346 7.5E-16 T 28-03-2018 AM348_RS13685 0e28cef0e56e53e84fe94014b8b01f82 379 Pfam PF02563 Polysaccharide biosynthesis/export protein 83 165 1.5E-26 T 28-03-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 AM348_RS00725 394907d5a1aa90e6e8570af0fe2b39a6 161 PIRSF PIRSF002094 1 161 2.3E-51 T 28-03-2018 IPR005632 Chaperone protein Skp GO:0051082 AM348_RS00725 394907d5a1aa90e6e8570af0fe2b39a6 161 Gene3D G3DSA:3.30.910.20 10 82 1.2E-9 T 28-03-2018 AM348_RS00725 394907d5a1aa90e6e8570af0fe2b39a6 161 Gene3D G3DSA:3.30.910.20 83 161 8.0E-13 T 28-03-2018 AM348_RS00725 394907d5a1aa90e6e8570af0fe2b39a6 161 SMART SM00935 10 161 4.7E-40 T 28-03-2018 IPR005632 Chaperone protein Skp GO:0051082 AM348_RS00725 394907d5a1aa90e6e8570af0fe2b39a6 161 SUPERFAMILY SSF111384 20 160 7.19E-32 T 28-03-2018 IPR024930 Skp domain AM348_RS00725 394907d5a1aa90e6e8570af0fe2b39a6 161 Pfam PF03938 Outer membrane protein (OmpH-like) 8 159 2.9E-29 T 28-03-2018 IPR005632 Chaperone protein Skp GO:0051082 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 Gene3D G3DSA:1.10.287.1050 1 57 3.6E-22 T 28-03-2018 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 PIRSF PIRSF002096 1 133 3.8E-55 T 28-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 Pfam PF00816 H-NS histone family 37 127 4.2E-19 T 28-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 SUPERFAMILY SSF81273 91 133 2.08E-11 T 28-03-2018 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 Gene3D G3DSA:4.10.430.10 92 133 3.2E-20 T 28-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 SUPERFAMILY SSF81273 2 58 1.18E-17 T 28-03-2018 AM348_RS10655 b2a5e758238e4a79f2f39007a78de06d 133 SMART SM00528 86 133 1.5E-25 T 28-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 SMART SM00922 176 273 4.3E-27 T 28-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 Gene3D G3DSA:3.20.20.120 163 381 4.6E-61 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 SUPERFAMILY SSF54826 27 157 7.96E-26 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 Pfam PF13378 Enolase C-terminal domain-like 187 383 8.4E-60 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 223 254 - T 28-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 SUPERFAMILY SSF51604 144 385 6.29E-71 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 Gene3D G3DSA:3.30.390.10 21 162 2.0E-28 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS17285 f8f2d5e6379deb9aeb1f7bf765268c7d 398 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 60 156 5.3E-13 T 28-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AM348_RS00495 33d127631475fd3f7046cf04be8e7364 201 SUPERFAMILY SSF49401 35 200 8.45E-27 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00495 33d127631475fd3f7046cf04be8e7364 201 Pfam PF00419 Fimbrial protein 44 200 5.7E-8 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00495 33d127631475fd3f7046cf04be8e7364 201 Gene3D G3DSA:2.60.40.1090 34 201 2.4E-21 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS12465 3ae4dac6cf34d767eeee5f8d16087054 189 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 9.1E-69 T 28-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 AM348_RS12465 3ae4dac6cf34d767eeee5f8d16087054 189 Gene3D G3DSA:3.40.50.1950 2 189 8.9E-52 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS12465 3ae4dac6cf34d767eeee5f8d16087054 189 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 37.114 T 28-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 AM348_RS12465 3ae4dac6cf34d767eeee5f8d16087054 189 SUPERFAMILY SSF52507 2 188 2.88E-59 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS12465 3ae4dac6cf34d767eeee5f8d16087054 189 Pfam PF02441 Flavoprotein 2 165 1.0E-23 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 Gene3D G3DSA:3.50.50.60 168 370 1.2E-34 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 SUPERFAMILY SSF51905 6 345 4.54E-33 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 5.4E-16 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 5.4E-16 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.4E-16 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 5.4E-16 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 Gene3D G3DSA:3.50.50.60 5 159 2.7E-16 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.8E-8 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.8E-8 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.8E-8 T 28-03-2018 AM348_RS19510 caf10bb554097151219693c67b6d9f8a 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 6.9E-71 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 10 238 2.9E-106 T 28-03-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 Gene3D G3DSA:3.40.1410.10 75 238 3.3E-38 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 4.4E-23 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 Pfam PF07702 UTRA domain 96 232 6.2E-36 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 SUPERFAMILY SSF64288 62 235 1.88E-41 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 6.4E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 6.4E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 SMART SM00866 95 232 1.7E-33 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 SUPERFAMILY SSF46785 4 78 9.46E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 Gene3D G3DSA:1.10.10.10 2 74 9.9E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21395 a699581022d7094f1aa628b4f4ae99a1 239 SMART SM00345 15 74 1.2E-23 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 TIGRFAM TIGR02649 true_RNase_BN: ribonuclease BN 2 305 9.6E-185 T 28-03-2018 IPR013469 Ribonuclease BN GO:0016891|GO:0042779 AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 Pfam PF12706 Beta-lactamase superfamily domain 36 153 1.4E-8 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 Pfam PF12706 Beta-lactamase superfamily domain 203 270 3.0E-8 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 SUPERFAMILY SSF56281 1 304 2.16E-87 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 2 304 1.8E-103 T 28-03-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 Hamap MF_01818 Ribonuclease BN [rbn]. 1 305 39.546 T 28-03-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 AM348_RS12650 57a4a1109fd8a31606521a33dbee50d3 305 Gene3D G3DSA:3.60.15.10 1 305 3.6E-59 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS06025 78a7a012b0d97e0d917329dc276293c6 213 Pfam PF11622 Protein of unknown function (DUF3251) 94 189 1.7E-6 T 28-03-2018 IPR021658 Domain of unknown function DUF3251 AM348_RS06025 78a7a012b0d97e0d917329dc276293c6 213 Gene3D G3DSA:2.60.40.1620 67 192 2.0E-30 T 28-03-2018 IPR021658 Domain of unknown function DUF3251 AM348_RS17600 773ff2401683552982c2d8fda8ae0205 643 Gene3D G3DSA:3.40.50.300 50 423 1.8E-11 T 28-03-2018 AM348_RS17600 773ff2401683552982c2d8fda8ae0205 643 SUPERFAMILY SSF52540 35 203 4.94E-9 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 194 228 - T 28-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 Gene3D G3DSA:2.30.30.60 178 228 2.1E-13 T 28-03-2018 AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 SUPERFAMILY SSF50182 162 228 6.21E-17 T 28-03-2018 IPR010920 LSM domain AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 SUPERFAMILY SSF82689 231 335 1.96E-23 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 Pfam PF00924 Mechanosensitive ion channel 120 323 1.9E-62 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 Gene3D G3DSA:3.30.70.100 230 329 4.8E-22 T 28-03-2018 AM348_RS16710 4faa56b28f823ca5f08082006b8878d7 343 SUPERFAMILY SSF82861 79 160 1.15E-9 T 28-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM348_RS21075 31f9d344a358341cf86891be099af034 321 Gene3D G3DSA:3.60.20.30 179 321 3.2E-51 T 28-03-2018 AM348_RS21075 31f9d344a358341cf86891be099af034 321 SUPERFAMILY SSF56235 4 309 9.26E-100 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS21075 31f9d344a358341cf86891be099af034 321 Pfam PF01112 Asparaginase 5 311 5.2E-120 T 28-03-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 Gene3D G3DSA:2.30.38.10 348 430 9.8E-21 T 28-03-2018 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 3 527 1.4E-275 T 28-03-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 Pfam PF00501 AMP-binding enzyme 36 437 2.5E-77 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 Gene3D G3DSA:3.40.50.980 27 190 2.2E-26 T 28-03-2018 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 Gene3D G3DSA:3.30.300.30 431 536 2.2E-22 T 28-03-2018 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 SUPERFAMILY SSF56801 5 532 1.96E-124 T 28-03-2018 AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 Pfam PF13193 AMP-binding enzyme C-terminal domain 446 520 1.2E-10 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS22345 eed4bdc3059f40d03cd216025b154af5 536 Gene3D G3DSA:3.40.50.980 191 347 7.7E-30 T 28-03-2018 AM348_RS12105 347d764d13eba94a4d68208570413116 130 Gene3D G3DSA:1.10.10.10 22 61 7.6E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12105 347d764d13eba94a4d68208570413116 130 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 8 129 5.0E-53 T 28-03-2018 IPR010749 Protein of unknown function DUF1323 AM348_RS12105 347d764d13eba94a4d68208570413116 130 SUPERFAMILY SSF46955 5 82 2.66E-14 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS12105 347d764d13eba94a4d68208570413116 130 Pfam PF07037 Putative transcription regulator (DUF1323) 8 129 2.2E-51 T 28-03-2018 IPR010749 Protein of unknown function DUF1323 AM348_RS12105 347d764d13eba94a4d68208570413116 130 Gene3D G3DSA:1.10.10.10 2 21 4.0E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04310 948169bc34a74582cbac50a249846836 281 Pfam PF00230 Major intrinsic protein 2 251 8.4E-75 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 Gene3D G3DSA:1.20.1080.10 1 259 7.3E-79 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 PRINTS PR00783 Major intrinsic protein family signature 85 104 3.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 PRINTS PR00783 Major intrinsic protein family signature 9 28 3.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 PRINTS PR00783 Major intrinsic protein family signature 48 72 3.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 PRINTS PR00783 Major intrinsic protein family signature 184 206 3.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 PRINTS PR00783 Major intrinsic protein family signature 151 169 3.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 PRINTS PR00783 Major intrinsic protein family signature 234 254 3.8E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 TIGRFAM TIGR00861 MIP: MIP family channel proteins 13 251 4.0E-75 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 SUPERFAMILY SSF81338 9 257 1.13E-79 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS04310 948169bc34a74582cbac50a249846836 281 ProSitePatterns PS00221 MIP family signature. 66 74 - T 28-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS11880 6c2c46eaa20404514758169980ae3578 410 Pfam PF04346 Ethanolamine utilisation protein, EutH 3 391 1.3E-140 T 28-03-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 AM348_RS11880 6c2c46eaa20404514758169980ae3578 410 PIRSF PIRSF019466 1 407 4.6E-128 T 28-03-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Gene3D G3DSA:3.40.30.10 443 481 0.001 T 28-03-2018 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 ProSitePatterns PS00194 Thioredoxin family active site. 476 494 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Gene3D G3DSA:2.60.40.1250 20 144 2.0E-38 T 28-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 176 381 1.2E-18 T 28-03-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 SUPERFAMILY SSF74863 27 140 3.27E-40 T 28-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 568 40.014 T 28-03-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Pfam PF13899 Thioredoxin-like 466 541 2.4E-14 T 28-03-2018 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Gene3D G3DSA:3.40.30.10 482 568 3.4E-13 T 28-03-2018 AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 Pfam PF11412 Disulphide bond corrector protein DsbC 28 138 2.3E-34 T 28-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM348_RS03075 3ad76c2b9241109016a16db515d4f4e7 569 SUPERFAMILY SSF52833 449 565 7.4E-24 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS02010 67d121202d744a70c906223558ef2e61 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 217 258 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 Pfam PF02311 AraC-like ligand binding domain 28 141 3.9E-15 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 SUPERFAMILY SSF46689 216 262 9.41E-9 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 Gene3D G3DSA:1.10.10.60 169 216 3.7E-10 T 28-03-2018 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 SUPERFAMILY SSF46689 168 213 3.31E-6 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 Gene3D G3DSA:2.60.120.10 20 168 6.5E-10 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS02010 67d121202d744a70c906223558ef2e61 271 SUPERFAMILY SSF51215 23 150 5.23E-15 T 28-03-2018 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 Pfam PF12833 Helix-turn-helix domain 186 261 6.1E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 Gene3D G3DSA:1.10.10.60 217 269 5.9E-10 T 28-03-2018 AM348_RS02010 67d121202d744a70c906223558ef2e61 271 SMART SM00342 180 262 1.2E-25 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 Pfam PF00936 BMC domain 36 107 6.3E-12 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 Pfam PF00936 BMC domain 162 208 2.2E-6 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 PIRSF PIRSF012290 1 219 3.9E-83 T 28-03-2018 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0009605 AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 TIGRFAM TIGR04502 microcomp_EutL: microcompartment protein EutL 6 217 1.1E-101 T 28-03-2018 IPR030983 Ethanolamine utilization protein EutL GO:0005198 AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 SMART SM00877 146 219 8.2E-7 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 SMART SM00877 35 110 2.7E-5 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11900 026ad8a4b68c5663ba0c70cdd32ce2aa 219 SUPERFAMILY SSF143414 159 211 1.11E-5 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 68 244 1.7E-31 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF54523 1322 1433 8.47E-25 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 713 799 1.31E-8 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:3.30.1300.30 1333 1433 5.5E-24 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 656 708 1.11E-6 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 698 721 1.4E-7 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 538 559 1.4E-5 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 345 363 1.3E-5 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 460 546 7.98E-6 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 432 457 2.8E-13 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 627 651 7.4E-16 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 860 904 2.9E-11 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 1152 1188 2.0E-7 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:1.20.5.170 793 814 4.4E-16 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 1189 1281 2.9E-22 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 722 792 2.8E-13 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 248 344 1.1E-10 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF03895 YadA-like membrane anchor domain 1373 1433 2.5E-17 T 28-03-2018 IPR005594 YadA-like, C-terminal AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 264 350 3.92E-6 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 819 868 2.35E-7 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 558 637 1.44E-6 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 904 1023 4.45E-18 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 367 441 3.14E-6 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 1.7E-8 T 28-03-2018 IPR024973 ESPR domain AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 815 859 4.8E-12 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 652 697 1.2E-10 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 1025 1151 1.2E-25 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 1282 1332 1.3E-7 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 560 626 3.1E-11 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 458 537 8.4E-10 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 364 431 1.4E-10 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 1043 1157 9.02E-24 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 160 186 1.1E-4 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 1076 1102 4.1E-4 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 1214 1240 3.3E-7 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 146 172 1.4E-5 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 915 941 1.0E-5 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 188 213 4.4E-7 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 119 144 2.3E-4 T 28-03-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 SUPERFAMILY SSF101967 1204 1279 2.35E-18 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 681 725 2.1E-13 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 843 886 9.2E-13 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 218 261 7.0E-7 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1001 1038 4.6E-9 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 414 458 3.5E-12 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 772 816 4.0E-14 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 323 367 1.4E-11 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1137 1177 1.0E-10 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 610 653 2.9E-13 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1311 1344 1.8E-6 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 519 563 9.6E-12 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1258 1298 3.7E-10 T 28-03-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 125 244 6.4E-30 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 905 1024 1.7E-21 T 28-03-2018 AM348_RS06020 4cb374e6eca274c6003754e649f08cb8 1433 Gene3D G3DSA:2.150.10.10 67 124 1.2E-6 T 28-03-2018 AM348_RS11475 96ffa1e03161e950152c98df3747e0ec 327 Gene3D G3DSA:3.40.50.2300 26 143 5.3E-20 T 28-03-2018 AM348_RS11475 96ffa1e03161e950152c98df3747e0ec 327 SUPERFAMILY SSF53822 27 325 7.07E-65 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS11475 96ffa1e03161e950152c98df3747e0ec 327 Gene3D G3DSA:3.40.50.2300 144 298 9.8E-15 T 28-03-2018 AM348_RS11475 96ffa1e03161e950152c98df3747e0ec 327 Pfam PF13407 Periplasmic binding protein domain 30 287 8.9E-55 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS21585 c3dcbc80bc8c20fed6f95c1249edc477 379 PIRSF PIRSF000267 2 378 1.4E-135 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS21585 c3dcbc80bc8c20fed6f95c1249edc477 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 2.3E-110 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS21585 c3dcbc80bc8c20fed6f95c1249edc477 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 3.0E-203 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS02300 6bc11ddffba76034499881d3577e350f 319 Pfam PF00419 Fimbrial protein 173 319 6.0E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS02300 6bc11ddffba76034499881d3577e350f 319 Gene3D G3DSA:2.60.40.1090 169 319 8.6E-30 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS02300 6bc11ddffba76034499881d3577e350f 319 SUPERFAMILY SSF49401 183 318 1.29E-21 T 28-03-2018 IPR008966 Adhesion domain AM348_RS22375 2e99fe3daebec1d120aa705f214e3b38 265 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22375 2e99fe3daebec1d120aa705f214e3b38 265 Gene3D G3DSA:3.40.50.300 3 241 1.6E-55 T 28-03-2018 AM348_RS22375 2e99fe3daebec1d120aa705f214e3b38 265 SMART SM00382 32 242 2.3E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22375 2e99fe3daebec1d120aa705f214e3b38 265 SUPERFAMILY SSF52540 8 233 1.01E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22375 2e99fe3daebec1d120aa705f214e3b38 265 Pfam PF00005 ABC transporter 25 171 3.6E-33 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21225 14c62687a05ded78395d3fe039b1a1fa 322 Gene3D G3DSA:3.40.1030.10 80 322 6.6E-40 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS21225 14c62687a05ded78395d3fe039b1a1fa 322 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 69 2.9E-11 T 28-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS21225 14c62687a05ded78395d3fe039b1a1fa 322 SUPERFAMILY SSF52418 79 321 7.33E-49 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS21225 14c62687a05ded78395d3fe039b1a1fa 322 Gene3D G3DSA:1.20.970.10 1 71 8.8E-16 T 28-03-2018 AM348_RS21225 14c62687a05ded78395d3fe039b1a1fa 322 SUPERFAMILY SSF47648 7 72 2.22E-15 T 28-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.2E-112 T 28-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 Gene3D G3DSA:1.20.1180.10 197 262 3.2E-24 T 28-03-2018 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 SUPERFAMILY SSF51161 2 262 1.09E-81 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 8.2E-9 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 18 52 1.5E-8 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 Gene3D G3DSA:2.160.10.10 1 196 2.8E-44 T 28-03-2018 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 PIRSF PIRSF000456 5 262 2.6E-108 T 28-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 48.922 T 28-03-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM348_RS00710 2214ea3e77b7309cdd03a0061ead243e 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 1.1E-29 T 28-03-2018 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 AM348_RS07605 70c95ed76a0b390097f0211b53215499 393 Gene3D G3DSA:1.10.3720.10 77 389 4.4E-48 T 28-03-2018 AM348_RS07605 70c95ed76a0b390097f0211b53215499 393 SUPERFAMILY SSF161098 181 375 1.22E-26 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS07605 70c95ed76a0b390097f0211b53215499 393 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 84 147 1.4E-16 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS07605 70c95ed76a0b390097f0211b53215499 393 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 388 4.3E-15 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS07605 70c95ed76a0b390097f0211b53215499 393 SUPERFAMILY SSF161098 84 152 3.27E-13 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19035 b81af58feb65635e588af699c217bf71 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 28-03-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 AM348_RS19035 b81af58feb65635e588af699c217bf71 268 Gene3D G3DSA:3.60.10.10 1 268 6.1E-53 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS19035 b81af58feb65635e588af699c217bf71 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 1.1E-21 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS19035 b81af58feb65635e588af699c217bf71 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 28-03-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 AM348_RS19035 b81af58feb65635e588af699c217bf71 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 1.7E-110 T 28-03-2018 AM348_RS19035 b81af58feb65635e588af699c217bf71 268 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 197 213 - T 28-03-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 AM348_RS19035 b81af58feb65635e588af699c217bf71 268 SUPERFAMILY SSF56219 1 267 2.22E-88 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS19035 b81af58feb65635e588af699c217bf71 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 7.6E-94 T 28-03-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 AM348_RS18315 d5a3a0100e1699d9c481904553c24221 102 Pfam PF08803 Putative mono-oxygenase ydhR 5 99 2.5E-42 T 28-03-2018 IPR014910 Putative monooxygenase YdhR AM348_RS18315 d5a3a0100e1699d9c481904553c24221 102 SUPERFAMILY SSF54909 5 98 2.07E-34 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS22425 e2645daef5256b89d6882c76363455a8 316 Gene3D G3DSA:3.40.50.1360 60 314 4.4E-38 T 28-03-2018 AM348_RS22425 e2645daef5256b89d6882c76363455a8 316 Pfam PF04198 Putative sugar-binding domain 63 314 5.2E-62 T 28-03-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AM348_RS22425 e2645daef5256b89d6882c76363455a8 316 Gene3D G3DSA:1.10.10.60 1 54 8.4E-14 T 28-03-2018 AM348_RS22425 e2645daef5256b89d6882c76363455a8 316 SUPERFAMILY SSF100950 63 313 2.02E-66 T 28-03-2018 AM348_RS09980 21d04fd7231ee8cb250742c5e8bc91bc 380 PIRSF PIRSF006078 1 378 5.8E-136 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS09980 21d04fd7231ee8cb250742c5e8bc91bc 380 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 2.9E-160 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS09980 21d04fd7231ee8cb250742c5e8bc91bc 380 SUPERFAMILY SSF110738 1 373 1.03E-139 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS09980 21d04fd7231ee8cb250742c5e8bc91bc 380 Gene3D G3DSA:3.20.20.70 269 376 0.22 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS09980 21d04fd7231ee8cb250742c5e8bc91bc 380 Pfam PF02595 Glycerate kinase family 3 373 1.3E-146 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS09980 21d04fd7231ee8cb250742c5e8bc91bc 380 Gene3D G3DSA:3.90.1510.10 42 268 2.5E-94 T 28-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 AM348_RS01130 f6d50b1bc9dd7b5e842c35e8985141e2 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.8E-9 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS01130 f6d50b1bc9dd7b5e842c35e8985141e2 145 SUPERFAMILY SSF54523 7 114 3.14E-23 T 28-03-2018 AM348_RS01130 f6d50b1bc9dd7b5e842c35e8985141e2 145 Gene3D G3DSA:3.30.700.10 7 139 2.0E-24 T 28-03-2018 AM348_RS01130 f6d50b1bc9dd7b5e842c35e8985141e2 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 7.7E-11 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS01130 f6d50b1bc9dd7b5e842c35e8985141e2 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS01130 f6d50b1bc9dd7b5e842c35e8985141e2 145 Pfam PF00114 Pilin (bacterial filament) 36 121 8.5E-5 T 28-03-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 Gene3D G3DSA:3.40.630.20 1 214 2.2E-65 T 28-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 SUPERFAMILY SSF53182 1 214 1.96E-73 T 28-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 Pfam PF01470 Pyroglutamyl peptidase 3 201 2.0E-81 T 28-03-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 28-03-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 200 40.471 T 28-03-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 PIRSF PIRSF015592 1 212 4.3E-85 T 28-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 211 1.6E-87 T 28-03-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 5.2E-47 T 28-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 161 173 5.2E-47 T 28-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 5.2E-47 T 28-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 5.2E-47 T 28-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 5.2E-47 T 28-03-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 AM348_RS21780 4f0d34eb959e5a4ea70b036f8abf666b 214 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 28-03-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site AM348_RS10595 68de41b19d199241e89cb0720686cdd4 331 Gene3D G3DSA:3.40.190.10 158 326 1.6E-35 T 28-03-2018 AM348_RS10595 68de41b19d199241e89cb0720686cdd4 331 SUPERFAMILY SSF53850 24 329 1.05E-92 T 28-03-2018 AM348_RS10595 68de41b19d199241e89cb0720686cdd4 331 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 312 1.8E-54 T 28-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM348_RS10595 68de41b19d199241e89cb0720686cdd4 331 Gene3D G3DSA:3.40.190.10 22 157 1.9E-16 T 28-03-2018 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 SUPERFAMILY SSF46689 176 227 5.55E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 SUPERFAMILY SSF46689 231 279 2.78E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 Gene3D G3DSA:1.10.10.60 176 229 2.2E-12 T 28-03-2018 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 Pfam PF12833 Helix-turn-helix domain 200 278 5.0E-20 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 231 273 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 246 261 4.0E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 261 277 4.0E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 Pfam PF02311 AraC-like ligand binding domain 23 160 3.7E-26 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 Gene3D G3DSA:1.10.10.60 230 280 3.7E-12 T 28-03-2018 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 Gene3D G3DSA:2.60.120.280 7 170 1.6E-26 T 28-03-2018 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 SUPERFAMILY SSF51215 8 163 3.27E-38 T 28-03-2018 AM348_RS01360 fdb00c255afacbaa4eb9f8d22459a0f2 281 SMART SM00342 194 277 7.6E-32 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 Pfam PF03466 LysR substrate binding domain 98 282 8.4E-18 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS04210 a0e9bac94e989808663640e74d844426 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 8.3E-10 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 8.3E-10 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 8.3E-10 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 Gene3D G3DSA:3.40.190.10 97 182 4.2E-10 T 28-03-2018 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 1.0E-23 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 Gene3D G3DSA:3.40.190.10 183 274 1.2E-13 T 28-03-2018 AM348_RS04210 a0e9bac94e989808663640e74d844426 302 SUPERFAMILY SSF46785 9 93 5.53E-25 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04210 a0e9bac94e989808663640e74d844426 302 Gene3D G3DSA:1.10.10.10 1 95 2.2E-25 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04210 a0e9bac94e989808663640e74d844426 302 SUPERFAMILY SSF53850 99 284 3.08E-19 T 28-03-2018 AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 SUPERFAMILY SSF55658 1 57 4.01E-19 T 28-03-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 3.8E-59 T 28-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 Gene3D G3DSA:3.40.5.10 1 49 1.1E-22 T 28-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 SUPERFAMILY SSF55653 61 149 4.19E-26 T 28-03-2018 IPR020069 Ribosomal protein L9, C-terminal AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 3.1E-26 T 28-03-2018 IPR020069 Ribosomal protein L9, C-terminal AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.767 T 28-03-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 28-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 5.4E-22 T 28-03-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02750 7da12bf68f6ebb416f102ddb7582175d 149 Gene3D G3DSA:3.10.430.100 63 148 1.3E-26 T 28-03-2018 IPR020069 Ribosomal protein L9, C-terminal AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 Pfam PF03882 MukF winged-helix domain 3 117 4.7E-58 T 28-03-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 SUPERFAMILY SSF140570 119 281 2.09E-77 T 28-03-2018 IPR033440 Chromosome partition protein MukF, middle domain AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 Gene3D G3DSA:1.10.10.10 24 116 1.4E-40 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 Pfam PF17192 MukF middle domain 121 281 2.6E-85 T 28-03-2018 IPR033440 Chromosome partition protein MukF, middle domain AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 Pfam PF17193 MukF C-terminal domain 283 440 6.7E-81 T 28-03-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 57.876 T 28-03-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 SUPERFAMILY SSF46785 8 118 8.16E-49 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20695 a67f5678e3f8d6775e66b4fcd9869bcf 440 PIRSF PIRSF018282 1 440 3.5E-247 T 28-03-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 SMART SM00387 457 565 1.5E-21 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 461 563 1.6E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 SUPERFAMILY SSF55874 418 562 2.36E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 SUPERFAMILY SSF47384 331 405 2.16E-8 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Gene3D G3DSA:3.30.565.10 416 575 3.4E-28 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Gene3D G3DSA:3.40.190.10 107 262 2.1E-15 T 28-03-2018 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Pfam PF00512 His Kinase A (phospho-acceptor) domain 342 403 4.9E-7 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 SUPERFAMILY SSF53850 29 245 7.77E-13 T 28-03-2018 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Gene3D G3DSA:3.40.190.10 12 90 0.053 T 28-03-2018 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 13 258 9.3E-32 T 28-03-2018 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 520 2.8E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 506 2.8E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 539 2.8E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 Gene3D G3DSA:1.10.287.130 327 405 4.9E-8 T 28-03-2018 AM348_RS18590 ce0416fa4c681ad3dbe5dc4daec8ab7c 577 SMART SM00388 341 410 1.1E-4 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS02335 4e8565696e0e0e17a49c5ceeb3371abb 344 Pfam PF01661 Macro domain 18 130 1.0E-24 T 28-03-2018 IPR002589 Macro domain AM348_RS02335 4e8565696e0e0e17a49c5ceeb3371abb 344 Gene3D G3DSA:3.40.220.10 1 306 1.1E-36 T 28-03-2018 AM348_RS02335 4e8565696e0e0e17a49c5ceeb3371abb 344 SUPERFAMILY SSF52949 1 148 3.03E-46 T 28-03-2018 AM348_RS02335 4e8565696e0e0e17a49c5ceeb3371abb 344 SMART SM00506 1 132 1.7E-25 T 28-03-2018 IPR002589 Macro domain AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 SUPERFAMILY SSF46689 278 323 2.69E-8 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 Gene3D G3DSA:1.10.10.60 223 276 3.0E-13 T 28-03-2018 AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 Gene3D G3DSA:1.10.10.60 277 327 3.4E-11 T 28-03-2018 AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 SUPERFAMILY SSF46689 225 276 2.87E-8 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 Pfam PF12833 Helix-turn-helix domain 248 325 2.3E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 SMART SM00342 242 324 2.1E-29 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 Gene3D G3DSA:2.60.120.10 63 140 0.0017 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS00155 51d00e2e955d5b4c405564b0deed2f38 327 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 279 320 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS15745 07b7ce2d6a9bacf569bd3f051ca8a923 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 5 206 9.5E-94 T 28-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AM348_RS15745 07b7ce2d6a9bacf569bd3f051ca8a923 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 29.083 T 28-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AM348_RS15745 07b7ce2d6a9bacf569bd3f051ca8a923 207 SUPERFAMILY SSF89392 34 206 9.81E-56 T 28-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AM348_RS15745 07b7ce2d6a9bacf569bd3f051ca8a923 207 Gene3D G3DSA:2.50.20.10 30 207 1.2E-54 T 28-03-2018 AM348_RS15745 07b7ce2d6a9bacf569bd3f051ca8a923 207 Pfam PF03550 Outer membrane lipoprotein LolB 50 204 6.5E-50 T 28-03-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 275 59.081 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 164 188 - T 28-03-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PIRSF PIRSF000166 1 299 4.0E-130 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 Gene3D G3DSA:3.40.1500.10 1 299 6.7E-141 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 Pfam PF01218 Coproporphyrinogen III oxidase 7 299 3.6E-133 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 123 145 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 88 112 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 46 67 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 160 189 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 29 45 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 232 259 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 PRINTS PR00073 Coprogen oxidase signature 260 286 4.5E-89 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS11920 f3410a2f911501bbebc7bdbedcf7734b 299 SUPERFAMILY SSF102886 3 298 8.11E-140 T 28-03-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Pfam PF00226 DnaJ domain 5 66 6.5E-23 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Pfam PF01556 DnaJ C terminal domain 120 276 9.3E-33 T 28-03-2018 IPR002939 Chaperone DnaJ, C-terminal AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Gene3D G3DSA:1.10.287.110 1 114 2.1E-31 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Gene3D G3DSA:2.60.260.20 204 282 2.2E-18 T 28-03-2018 AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 SUPERFAMILY SSF46565 1 103 4.32E-27 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Gene3D G3DSA:2.60.260.20 115 199 3.8E-16 T 28-03-2018 AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 SUPERFAMILY SSF49493 115 209 3.01E-15 T 28-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 PRINTS PR00625 DnaJ domain signature 41 61 2.5E-17 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 PRINTS PR00625 DnaJ domain signature 61 80 2.5E-17 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 PRINTS PR00625 DnaJ domain signature 25 40 2.5E-17 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 PRINTS PR00625 DnaJ domain signature 7 25 2.5E-17 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Gene3D G3DSA:1.20.5.460 283 304 1.0E-13 T 28-03-2018 AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 Hamap MF_01154 Curved DNA-binding protein [cbpA]. 1 306 54.761 T 28-03-2018 IPR023859 DNA-binding protein, curved-DNA AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 SUPERFAMILY SSF49493 205 284 7.19E-16 T 28-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 SMART SM00271 4 61 1.7E-25 T 28-03-2018 IPR001623 DnaJ domain AM348_RS20250 5ca0aad25623a6d62c6f1ee6937c1962 306 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 28-03-2018 IPR018253 DnaJ domain, conserved site AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 583 713 8.0E-65 T 28-03-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 SUPERFAMILY SSF51703 3 542 6.02E-219 T 28-03-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 Gene3D G3DSA:3.20.20.240 27 542 4.1E-243 T 28-03-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 28 547 8.1E-281 T 28-03-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 Pfam PF02310 B12 binding domain 586 699 4.0E-15 T 28-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 Gene3D G3DSA:3.40.50.280 574 712 1.5E-35 T 28-03-2018 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 Pfam PF01642 Methylmalonyl-CoA mutase 28 539 1.1E-236 T 28-03-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 370 395 - T 28-03-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09375 59be8fc8cf5d83ebd6484f969d99217c 714 SUPERFAMILY SSF52242 556 713 1.7E-55 T 28-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM348_RS05740 4eef6bdf394ef583d84a3eac5c45a6f8 156 SUPERFAMILY SSF55804 1 149 2.62E-36 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS05740 4eef6bdf394ef583d84a3eac5c45a6f8 156 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 7 134 2.1E-37 T 28-03-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 AM348_RS05740 4eef6bdf394ef583d84a3eac5c45a6f8 156 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 149 3.3E-34 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS05740 4eef6bdf394ef583d84a3eac5c45a6f8 156 Gene3D G3DSA:3.40.930.10 1 151 3.6E-37 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 Gene3D G3DSA:1.10.287.400 378 437 6.2E-29 T 28-03-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 419 1.1E-168 T 28-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 28-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 Gene3D G3DSA:3.40.50.620 2 178 2.5E-18 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 SUPERFAMILY SSF69864 190 444 3.27E-80 T 28-03-2018 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 Pfam PF00764 Arginosuccinate synthase 16 410 4.1E-56 T 28-03-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 28-03-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 SUPERFAMILY SSF52402 3 186 6.05E-35 T 28-03-2018 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 Gene3D G3DSA:3.90.1260.10 179 374 8.0E-55 T 28-03-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS08105 aeb047867916c07ff5f7a9ed4c9490f7 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 443 77.189 T 28-03-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS13385 5b3b45d110974cdbe803bdcbd713cfa3 369 Hamap MF_02040 Iron-sulfur cluster carrier protein. 101 350 37.459 T 28-03-2018 IPR019591 Mrp/NBP35 ATP-binding protein AM348_RS13385 5b3b45d110974cdbe803bdcbd713cfa3 369 Gene3D G3DSA:3.40.50.300 92 328 2.3E-61 T 28-03-2018 AM348_RS13385 5b3b45d110974cdbe803bdcbd713cfa3 369 SUPERFAMILY SSF52540 108 355 3.09E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13385 5b3b45d110974cdbe803bdcbd713cfa3 369 ProSitePatterns PS01215 Mrp family signature. 213 229 - T 28-03-2018 IPR000808 Mrp, conserved site GO:0005524 AM348_RS13385 5b3b45d110974cdbe803bdcbd713cfa3 369 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 106 349 2.9E-100 T 28-03-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 AM348_RS14875 d7d9e57e57dee3b00e9483a8fe15bfa8 156 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 149 1.3E-7 T 28-03-2018 IPR019587 Polyketide cyclase/dehydrase AM348_RS14875 d7d9e57e57dee3b00e9483a8fe15bfa8 156 Gene3D G3DSA:3.30.530.20 1 153 1.9E-17 T 28-03-2018 IPR023393 START-like domain AM348_RS14875 d7d9e57e57dee3b00e9483a8fe15bfa8 156 SUPERFAMILY SSF55961 4 139 3.37E-19 T 28-03-2018 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 SMART SM00388 203 269 1.5E-22 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 423 5.8E-25 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 95 421 2.9E-137 T 28-03-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Gene3D G3DSA:3.30.565.10 274 430 4.7E-39 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 1.4E-17 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 SMART SM00387 313 425 8.5E-37 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 SMART SM00091 98 164 6.5E-5 T 28-03-2018 IPR000014 PAS domain AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 SUPERFAMILY SSF47384 190 268 5.3E-19 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 3.9E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 3.9E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 3.9E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 3.9E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Gene3D G3DSA:1.10.287.130 209 265 1.0E-17 T 28-03-2018 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 6.9E-26 T 28-03-2018 IPR021766 Protein of unknown function DUF3329 GO:0004673 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Gene3D G3DSA:3.30.450.20 97 208 1.2E-13 T 28-03-2018 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 SUPERFAMILY SSF55785 87 195 1.74E-10 T 28-03-2018 IPR000014 PAS domain AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 Pfam PF00989 PAS fold 99 194 3.5E-11 T 28-03-2018 IPR013767 PAS fold GO:0006355 AM348_RS23430 fb50274114c961405c1bcf1663d55130 431 SUPERFAMILY SSF55874 259 423 2.62E-42 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 301 2.5E-163 T 28-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 Gene3D G3DSA:3.30.230.20 1 128 9.8E-49 T 28-03-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 SUPERFAMILY SSF54211 134 278 3.11E-54 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 SUPERFAMILY SSF54211 3 124 8.34E-42 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.134 T 28-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 Gene3D G3DSA:3.30.1700.10 129 299 5.1E-70 T 28-03-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS01180 ffd5cdab406de9b75853771cb7d4f5f4 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 3.3E-109 T 28-03-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 1.6E-82 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 39.093 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 PIRSF PIRSF000724 1 387 7.1E-134 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 Gene3D G3DSA:3.40.50.1260 175 371 7.7E-76 T 28-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 SUPERFAMILY SSF53748 3 383 8.01E-145 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 Pfam PF00162 Phosphoglycerate kinase 6 373 1.0E-139 T 28-03-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 28-03-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09330 fb280a5a1d7c44a48720da924812cd66 387 Gene3D G3DSA:3.40.50.1260 3 174 7.6E-61 T 28-03-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS17555 b728839c81f6cc8ce996fab162d33fcb 209 Pfam PF15977 Winged helix-turn-helix DNA binding 139 207 1.4E-28 T 28-03-2018 AM348_RS17555 b728839c81f6cc8ce996fab162d33fcb 209 SUPERFAMILY SSF51206 17 110 3.02E-5 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS17555 b728839c81f6cc8ce996fab162d33fcb 209 Gene3D G3DSA:1.10.10.10 133 202 6.7E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17555 b728839c81f6cc8ce996fab162d33fcb 209 Gene3D G3DSA:2.60.120.10 8 118 4.0E-4 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 Gene3D G3DSA:1.20.120.530 116 262 2.2E-25 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 Gene3D G3DSA:1.10.10.10 26 103 4.1E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 SUPERFAMILY SSF48008 120 252 3.4E-24 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 95 9.8E-21 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 SUPERFAMILY SSF46785 28 99 3.33E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 SMART SM00345 36 95 2.3E-22 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 Hamap MF_01236 Transcriptional regulator NanR [nanR]. 4 257 62.891 T 28-03-2018 IPR023730 HTH-type transcriptional repressor NanR AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 69 85 5.6E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 69 5.6E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 Pfam PF07729 FCD domain 125 246 4.3E-21 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS07845 13f1b391182723535aec26405f6b1dfe 263 SMART SM00895 123 247 6.9E-18 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 28-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.2E-18 T 28-03-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 28-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.9E-27 T 28-03-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Gene3D G3DSA:2.40.50.100 907 1021 8.6E-28 T 28-03-2018 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Gene3D G3DSA:2.40.50.100 1022 1126 3.3E-12 T 28-03-2018 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 SMART SM00663 235 514 1.1E-184 T 28-03-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Gene3D G3DSA:2.40.50.100 1153 1213 1.5E-14 T 28-03-2018 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 6.0E-26 T 28-03-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Gene3D G3DSA:2.40.40.20 346 488 7.3E-40 T 28-03-2018 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 SUPERFAMILY SSF64484 1133 1363 0.0 T 28-03-2018 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 SUPERFAMILY SSF64484 16 944 0.0 T 28-03-2018 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 1.2E-89 T 28-03-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1374 18.989 T 28-03-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03970 91e7c74645a3fc271cff8ff5a1b4a6b8 1407 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 7.8E-78 T 28-03-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 SUPERFAMILY SSF51998 175 698 1.74E-185 T 28-03-2018 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 Pfam PF08343 Ribonucleotide reductase N-terminal 16 97 2.6E-28 T 28-03-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 Gene3D G3DSA:3.20.70.20 81 700 5.1E-160 T 28-03-2018 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 15 714 0.0 T 28-03-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 99 171 2.2E-12 T 28-03-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 103 696 7.6E-158 T 28-03-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 Pfam PF02867 Ribonucleotide reductase, barrel domain 176 693 3.3E-141 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 566 588 - T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 426 449 1.6E-33 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 493 516 1.6E-33 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 382 393 1.6E-33 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 465 487 1.6E-33 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 577 604 1.6E-33 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 251 270 1.6E-33 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10620 b5dc919ce84c316d88b8afdcf74e584d 714 SUPERFAMILY SSF48168 14 174 4.45E-63 T 28-03-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS07320 76fe739d9dab8096b6cced9fd7bff56c 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 51 1.6E-14 T 28-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SMART SM00851 956 1042 5.1E-31 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SMART SM01096 424 547 8.1E-74 T 28-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:3.40.50.20 539 655 1.9E-62 T 28-03-2018 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.4E-64 T 28-03-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SUPERFAMILY SSF56059 128 401 4.95E-110 T 28-03-2018 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:1.10.1030.10 404 538 4.0E-52 T 28-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:3.30.1490.20 656 745 4.9E-24 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:3.40.50.20 4 109 2.9E-40 T 28-03-2018 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 3.7E-77 T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 2.3E-39 T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SUPERFAMILY SSF48108 396 554 7.32E-53 T 28-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:3.40.50.1380 937 1073 7.0E-30 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Pfam PF02142 MGS-like domain 957 1041 2.4E-18 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:3.30.470.20 746 936 3.5E-44 T 28-03-2018 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SUPERFAMILY SSF52440 1 127 5.61E-50 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SUPERFAMILY SSF56059 674 934 1.77E-105 T 28-03-2018 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Gene3D G3DSA:3.30.470.20 119 403 2.7E-67 T 28-03-2018 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.198 T 28-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SUPERFAMILY SSF52440 557 676 1.44E-49 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 SUPERFAMILY SSF52335 938 1071 9.03E-36 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 2.5E-39 T 28-03-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.385 T 28-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01530 092b74b48f4f4b05b3afaf9df59e8015 1074 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 28-03-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 Pfam PF00072 Response regulator receiver domain 640 749 7.0E-11 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 Pfam PF00672 HAMP domain 318 357 1.8E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SMART SM00388 397 459 4.1E-6 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 575 1.0E-16 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 596 1.0E-16 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 602 615 1.0E-16 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 561 1.0E-16 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SUPERFAMILY SSF52172 640 752 1.42E-18 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 616 2.3E-20 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 Gene3D G3DSA:3.30.565.10 441 617 4.9E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 Gene3D G3DSA:3.40.50.2300 628 754 4.3E-17 T 28-03-2018 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 Gene3D G3DSA:1.10.287.130 385 440 7.8E-5 T 28-03-2018 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SMART SM00448 638 749 4.1E-13 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SMART SM00387 500 618 4.4E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SUPERFAMILY SSF47384 393 457 3.34E-6 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SUPERFAMILY SSF158472 316 358 2.22E-7 T 28-03-2018 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SMART SM00304 310 363 3.0E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS03330 fee815e1982f3e7b2689d2225e6e4485 754 SUPERFAMILY SSF55874 450 619 3.93E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 Gene3D G3DSA:1.10.3130.10 2 135 2.3E-39 T 28-03-2018 AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 6.2E-10 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 SUPERFAMILY SSF51161 4 260 1.37E-68 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 8.6E-40 T 28-03-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 SMART SM00971 9 113 4.5E-65 T 28-03-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 7.8E-75 T 28-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 Gene3D G3DSA:2.160.10.10 136 268 1.9E-29 T 28-03-2018 AM348_RS05990 b58f2a833d4a87c52c9cd0c8b5e814a5 273 PIRSF PIRSF000441 75 266 4.2E-60 T 28-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 SUPERFAMILY SSF47170 25 177 7.46E-36 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 480 1.6E-54 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 SMART SM00304 212 264 4.3E-9 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 Gene3D G3DSA:1.10.287.950 325 516 2.6E-51 T 28-03-2018 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 Pfam PF02203 Tar ligand binding domain homologue 1 168 1.3E-46 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 Gene3D G3DSA:1.20.120.30 23 186 3.9E-28 T 28-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 Gene3D G3DSA:1.10.287.1060 231 324 0.068 T 28-03-2018 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 SMART SM00319 44 178 4.3E-36 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 SMART SM00283 265 512 8.2E-95 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 SUPERFAMILY SSF58104 232 513 5.1E-74 T 28-03-2018 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 4.1E-76 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 4.1E-76 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 4.1E-76 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 53 68 4.1E-76 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 4.1E-76 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 4.1E-76 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15025 a65fe9b0398339d806a678a02c819fb2 533 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 290 312 - T 28-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 217 232 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 431 442 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 279 292 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 146 159 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 203 216 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 493 506 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 293 306 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 170 178 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 PRINTS PR00415 Aconitase family signature 372 386 3.0E-42 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 28-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 Pfam PF00694 Aconitase C-terminal domain 691 818 1.5E-50 T 28-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 28-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 Gene3D G3DSA:3.20.19.10 652 891 2.4E-93 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 SUPERFAMILY SSF53732 10 625 7.59E-224 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 SUPERFAMILY SSF52016 630 890 3.53E-90 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 Gene3D G3DSA:3.40.1060.10 240 371 1.1E-43 T 28-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 Gene3D G3DSA:3.30.499.10 30 239 1.2E-74 T 28-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 18 890 0.0 T 28-03-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 Pfam PF00330 Aconitase family (aconitate hydratase) 71 562 2.5E-181 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS16480 be6db5e0e99370b7035e27b15a28f1c8 891 Gene3D G3DSA:3.30.499.10 372 576 8.1E-63 T 28-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS00505 9fe728cf23e7b408aeab37f4a4362b19 823 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 302 312 - T 28-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM348_RS00505 9fe728cf23e7b408aeab37f4a4362b19 823 Pfam PF13954 PapC N-terminal domain 31 172 2.2E-35 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS00505 9fe728cf23e7b408aeab37f4a4362b19 823 SUPERFAMILY SSF141729 30 147 4.71E-26 T 28-03-2018 AM348_RS00505 9fe728cf23e7b408aeab37f4a4362b19 823 Pfam PF13953 PapC C-terminal domain 752 807 5.9E-12 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS00505 9fe728cf23e7b408aeab37f4a4362b19 823 Pfam PF00577 Outer membrane usher protein 191 740 1.7E-178 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 SUPERFAMILY SSF47323 391 548 4.49E-46 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Gene3D G3DSA:3.40.50.620 4 81 1.7E-23 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Pfam PF09334 tRNA synthetases class I (M) 8 397 1.2E-165 T 28-03-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Gene3D G3DSA:3.40.50.620 249 372 4.0E-22 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 546 41.856 T 28-03-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Gene3D G3DSA:2.40.50.140 567 677 2.3E-25 T 28-03-2018 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Gene3D G3DSA:1.10.730.10 374 537 6.2E-36 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 543 677 1.4E-47 T 28-03-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Gene3D G3DSA:2.20.28.20 142 175 2.0E-15 T 28-03-2018 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 536 7.3E-208 T 28-03-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 SUPERFAMILY SSF50249 570 676 1.47E-28 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Pfam PF01588 Putative tRNA binding domain 581 674 3.8E-22 T 28-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 Gene3D G3DSA:2.170.220.10 181 248 1.4E-15 T 28-03-2018 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 SUPERFAMILY SSF57770 142 176 1.15E-12 T 28-03-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 292 307 1.1E-25 T 28-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 1.1E-25 T 28-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 1.1E-25 T 28-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 1.1E-25 T 28-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 1.1E-25 T 28-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 1.1E-25 T 28-03-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 SUPERFAMILY SSF52374 176 388 7.42E-107 T 28-03-2018 AM348_RS13380 17bd5ed82db19bdc52a9065ca27e2d57 677 SUPERFAMILY SSF52374 6 141 7.42E-107 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Gene3D G3DSA:2.40.40.20 557 690 2.6E-34 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 PIRSF PIRSF036643 1 691 8.3E-134 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Gene3D G3DSA:2.20.25.90 1 53 2.6E-20 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Gene3D G3DSA:3.40.50.740 253 538 4.8E-72 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Gene3D G3DSA:3.40.50.740 62 252 6.4E-44 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 1 51 7.5E-19 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 SUPERFAMILY SSF50692 564 710 7.23E-38 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Pfam PF00384 Molybdopterin oxidoreductase 57 473 6.5E-83 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 SUPERFAMILY SSF53706 3 543 5.5E-167 T 28-03-2018 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Pfam PF01568 Molydopterin dinucleotide binding domain 569 679 6.9E-24 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 Pfam PF04324 BFD-like [2Fe-2S] binding domain 811 859 3.5E-10 T 28-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 SMART SM00926 1 54 9.8E-22 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15845 d7daf4430f1453dc58dea1130f4f8172 866 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 6 24 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS02025 01cc7a39438b10bdad4660493eed5ff7 396 PIRSF PIRSF001434 1 396 9.1E-116 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS02025 01cc7a39438b10bdad4660493eed5ff7 396 Gene3D G3DSA:3.90.1150.10 260 396 8.7E-37 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS02025 01cc7a39438b10bdad4660493eed5ff7 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 392 6.6E-112 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS02025 01cc7a39438b10bdad4660493eed5ff7 396 SUPERFAMILY SSF53383 26 394 6.84E-86 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS02025 01cc7a39438b10bdad4660493eed5ff7 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 9 395 2.1E-173 T 28-03-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM348_RS02025 01cc7a39438b10bdad4660493eed5ff7 396 Gene3D G3DSA:3.40.640.10 2 259 5.5E-36 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS06120 e642d29579a40029e7b1bb3142c700f5 466 Pfam PF13347 MFS/sugar transport protein 27 448 1.5E-84 T 28-03-2018 AM348_RS06120 e642d29579a40029e7b1bb3142c700f5 466 SUPERFAMILY SSF103473 28 406 2.88E-26 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06120 e642d29579a40029e7b1bb3142c700f5 466 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 76 101 - T 28-03-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 AM348_RS06120 e642d29579a40029e7b1bb3142c700f5 466 Gene3D G3DSA:1.20.1250.20 229 445 6.2E-8 T 28-03-2018 AM348_RS06120 e642d29579a40029e7b1bb3142c700f5 466 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 25 462 1.2E-99 T 28-03-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 AM348_RS06120 e642d29579a40029e7b1bb3142c700f5 466 Gene3D G3DSA:1.20.1250.20 27 225 1.3E-17 T 28-03-2018 AM348_RS18750 3910d02fcc173f986f1aec31b1c36dae 254 SUPERFAMILY SSF52402 1 251 2.16E-54 T 28-03-2018 AM348_RS18750 3910d02fcc173f986f1aec31b1c36dae 254 Pfam PF01012 Electron transfer flavoprotein domain 28 206 1.2E-36 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS18750 3910d02fcc173f986f1aec31b1c36dae 254 PIRSF PIRSF000090 1 254 2.4E-61 T 28-03-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AM348_RS18750 3910d02fcc173f986f1aec31b1c36dae 254 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 28-03-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 AM348_RS18750 3910d02fcc173f986f1aec31b1c36dae 254 SMART SM00893 23 211 5.0E-37 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS18750 3910d02fcc173f986f1aec31b1c36dae 254 Gene3D G3DSA:3.40.50.620 1 253 5.4E-50 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 SMART SM00930 265 340 6.2E-24 T 28-03-2018 IPR018449 NIL domain AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 SMART SM00382 30 218 1.5E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 Gene3D G3DSA:3.40.50.300 1 254 2.2E-77 T 28-03-2018 AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 Pfam PF09383 NIL domain 268 339 4.1E-19 T 28-03-2018 IPR018449 NIL domain AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 Gene3D G3DSA:3.30.70.260 255 343 9.5E-26 T 28-03-2018 AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 Pfam PF00005 ABC transporter 21 169 5.0E-36 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 6.5E-207 T 28-03-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 SUPERFAMILY SSF55021 248 343 3.55E-26 T 28-03-2018 AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS00620 d86b07e49ad982f8327ce064129c90d7 343 SUPERFAMILY SSF52540 1 240 4.21E-85 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21490 9dfa006033a09e94d33e9ef2d274061c 124 ProDom PD079292 YBGS HOMEOBOX PRECURSOR SIGNAL PROBABLE SECRETED 30 124 5.0E-34 T 28-03-2018 IPR020363 Uncharacterised protein family YbgS AM348_RS21490 9dfa006033a09e94d33e9ef2d274061c 124 Pfam PF13985 YbgS-like protein 3 124 7.8E-53 T 28-03-2018 IPR020363 Uncharacterised protein family YbgS AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 Hamap MF_00416 Flagellar P-ring protein [flgI]. 1 358 38.943 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 Pfam PF02119 Flagellar P-ring protein 14 357 5.6E-138 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 114 132 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 180 198 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 244 256 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 29 44 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 49 64 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 154 172 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 97 114 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 14 29 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS19895 81dadfa5599e2f103e8fed89871cf747 358 PRINTS PR01010 Flagellar P-ring protein signature 75 94 3.1E-92 T 28-03-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 Gene3D G3DSA:3.40.50.10490 10 239 1.2E-55 T 28-03-2018 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 SUPERFAMILY SSF53697 4 248 4.23E-75 T 28-03-2018 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.492 T 28-03-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 Pfam PF01380 SIS domain 128 207 8.2E-9 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 296 6.4E-126 T 28-03-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 28-03-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 Gene3D G3DSA:1.10.8.10 240 268 1.6E-9 T 28-03-2018 AM348_RS11325 2d397596eba4b63ce9fba9f7820a474d 297 Gene3D G3DSA:1.10.8.10 269 297 3.0E-4 T 28-03-2018 AM348_RS07995 0bc8cb4d43a443bfbdee809858afff36 97 Pfam PF01722 BolA-like protein 30 87 1.8E-13 T 28-03-2018 IPR002634 BolA protein AM348_RS07995 0bc8cb4d43a443bfbdee809858afff36 97 SUPERFAMILY SSF82657 13 95 2.75E-28 T 28-03-2018 IPR002634 BolA protein AM348_RS07995 0bc8cb4d43a443bfbdee809858afff36 97 Gene3D G3DSA:3.30.300.90 10 96 2.4E-25 T 28-03-2018 AM348_RS07995 0bc8cb4d43a443bfbdee809858afff36 97 PIRSF PIRSF003113 5 96 1.8E-21 T 28-03-2018 IPR002634 BolA protein AM348_RS09250 17f6abd5530d12c8ed19926eb42e7907 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.663 T 28-03-2018 IPR003774 Protein of unknown function UPF0301 AM348_RS09250 17f6abd5530d12c8ed19926eb42e7907 187 SUPERFAMILY SSF143456 1 187 2.09E-65 T 28-03-2018 AM348_RS09250 17f6abd5530d12c8ed19926eb42e7907 187 Gene3D G3DSA:3.40.1740.10 1 95 4.9E-29 T 28-03-2018 AM348_RS09250 17f6abd5530d12c8ed19926eb42e7907 187 Gene3D G3DSA:3.40.1740.10 106 179 6.7E-12 T 28-03-2018 AM348_RS09250 17f6abd5530d12c8ed19926eb42e7907 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 5.0E-48 T 28-03-2018 IPR003774 Protein of unknown function UPF0301 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 32 287 1.4E-78 T 28-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 28 50 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 90 111 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 116 136 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 151 176 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 233 252 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 55 79 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 263 286 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 183 206 9.5E-113 T 28-03-2018 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 SUPERFAMILY SSF111364 32 287 6.41E-86 T 28-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AM348_RS23340 1dcd4cefcb402aeffdbd80f008ccf926 287 Gene3D G3DSA:2.40.230.20 26 287 2.2E-74 T 28-03-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 39 136 2.2E-8 T 28-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 SMART SM00922 184 284 3.6E-15 T 28-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 SUPERFAMILY SSF51604 138 414 7.42E-83 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 Gene3D G3DSA:3.30.390.10 8 143 8.7E-36 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 Gene3D G3DSA:3.20.20.120 144 413 1.9E-52 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 SUPERFAMILY SSF54826 7 136 1.58E-31 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 Pfam PF13378 Enolase C-terminal domain-like 187 404 4.9E-38 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS09970 ac1505bb0d29ae454af4bd0bf07d5e93 446 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 111 136 - T 28-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM348_RS02860 98809083a78226774818bd326a9373ca 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 28-03-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM348_RS02860 98809083a78226774818bd326a9373ca 432 SMART SM00788 4 425 1.8E-301 T 28-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM348_RS02860 98809083a78226774818bd326a9373ca 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 28-03-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM348_RS02860 98809083a78226774818bd326a9373ca 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 3.0E-178 T 28-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM348_RS02860 98809083a78226774818bd326a9373ca 432 Gene3D G3DSA:3.40.440.10 152 266 1.8E-27 T 28-03-2018 AM348_RS02860 98809083a78226774818bd326a9373ca 432 Gene3D G3DSA:3.40.440.10 1 151 4.9E-54 T 28-03-2018 AM348_RS02860 98809083a78226774818bd326a9373ca 432 SUPERFAMILY SSF52540 3 431 2.23E-180 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02860 98809083a78226774818bd326a9373ca 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 218.064 T 28-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM348_RS02860 98809083a78226774818bd326a9373ca 432 Gene3D G3DSA:3.90.170.10 267 432 4.8E-66 T 28-03-2018 AM348_RS02860 98809083a78226774818bd326a9373ca 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 1.0E-207 T 28-03-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 AM348_RS04740 f9cc2245887a077d4ea3e79e88aecb2b 443 SUPERFAMILY SSF55920 163 438 3.27E-55 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS04740 f9cc2245887a077d4ea3e79e88aecb2b 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 28-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AM348_RS04740 f9cc2245887a077d4ea3e79e88aecb2b 443 Gene3D G3DSA:3.90.230.10 160 442 1.6E-52 T 28-03-2018 AM348_RS04740 f9cc2245887a077d4ea3e79e88aecb2b 443 Pfam PF00557 Metallopeptidase family M24 168 430 2.8E-45 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS04740 f9cc2245887a077d4ea3e79e88aecb2b 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 57.902 T 28-03-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 7.7E-10 T 28-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Gene3D G3DSA:1.10.730.10 591 794 2.0E-46 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 SUPERFAMILY SSF50677 204 403 7.01E-54 T 28-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 0.0 T 28-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Gene3D G3DSA:3.40.50.620 387 590 3.4E-53 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 SUPERFAMILY SSF47323 652 929 4.49E-79 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.413 T 28-03-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 SUPERFAMILY SSF52374 403 648 5.38E-137 T 28-03-2018 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 SUPERFAMILY SSF52374 3 202 5.38E-137 T 28-03-2018 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Gene3D G3DSA:3.30.2320.20 802 896 4.6E-25 T 28-03-2018 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Gene3D G3DSA:3.90.740.10 189 386 1.1E-58 T 28-03-2018 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 1.5E-32 T 28-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 1.5E-32 T 28-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 1.5E-32 T 28-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 1.5E-32 T 28-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 1.5E-32 T 28-03-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Gene3D G3DSA:3.40.50.620 42 124 3.7E-28 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 640 9.1E-232 T 28-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS01575 00cdf6564af8764f8b7f66c71ab3c6e0 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 840 1.6E-28 T 28-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 AM348_RS06765 93d395d2bf8d95c08a9a17ed4a7a91c8 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.0E-69 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS06765 93d395d2bf8d95c08a9a17ed4a7a91c8 308 Gene3D G3DSA:1.10.3470.10 4 299 6.4E-53 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS17125 3f37816bed618357d29828417a94af65 314 SUPERFAMILY SSF161098 33 308 4.97E-43 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17125 3f37816bed618357d29828417a94af65 314 Gene3D G3DSA:1.10.3720.10 29 310 4.7E-33 T 28-03-2018 AM348_RS17125 3f37816bed618357d29828417a94af65 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 308 2.5E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 SMART SM00474 3 171 8.8E-52 T 28-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 TIGRFAM TIGR01388 rnd: ribonuclease D 5 372 4.3E-158 T 28-03-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 Gene3D G3DSA:1.10.150.80 195 293 1.2E-22 T 28-03-2018 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 SUPERFAMILY SSF47819 195 301 1.24E-29 T 28-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 Gene3D G3DSA:3.30.420.10 1 194 3.0E-41 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.007 T 28-03-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 SUPERFAMILY SSF47819 295 372 4.18E-24 T 28-03-2018 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 SUPERFAMILY SSF53098 2 210 8.67E-66 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 Pfam PF01612 3'-5' exonuclease 3 169 5.9E-44 T 28-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 Pfam PF00570 HRDC domain 213 278 3.9E-14 T 28-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM348_RS15450 b82712c638acbef90bd1814dd425e399 375 SMART SM00341 210 289 1.6E-21 T 28-03-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 3.0E-52 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 6.9E-115 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 SUPERFAMILY SSF118215 8 412 3.01E-121 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 28-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 28-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 48.392 T 28-03-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 AM348_RS03385 c3fbd1db04bed269db219438243c4fe7 436 Gene3D G3DSA:1.10.3860.10 2 418 8.9E-124 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 3 167 1.2E-36 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 SUPERFAMILY SSF53218 2 202 5.5E-36 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 SUPERFAMILY SSF142433 248 378 9.02E-5 T 28-03-2018 IPR008136 CinA, C-terminal AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 398 118.466 T 28-03-2018 IPR008135 Competence-induced protein CinA AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 Gene3D G3DSA:3.90.950.20 243 316 0.0043 T 28-03-2018 AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 Pfam PF00994 Probable molybdopterin binding domain 6 170 6.2E-31 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 397 9.9E-173 T 28-03-2018 IPR008135 Competence-induced protein CinA AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 SMART SM00852 5 172 2.3E-37 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 PIRSF PIRSF006728 1 384 1.9E-111 T 28-03-2018 IPR008135 Competence-induced protein CinA AM348_RS12745 14e6a3cc9499e91f3863c02dcfe998ff 398 Gene3D G3DSA:3.40.980.10 1 172 1.8E-38 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS06490 6c303f96a1988b702731276a98785802 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 25 189 8.1E-52 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS06490 6c303f96a1988b702731276a98785802 490 PRINTS PR00084 Mannitol dehydrogenase signature 180 193 2.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06490 6c303f96a1988b702731276a98785802 490 PRINTS PR00084 Mannitol dehydrogenase signature 219 232 2.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06490 6c303f96a1988b702731276a98785802 490 PRINTS PR00084 Mannitol dehydrogenase signature 26 36 2.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06490 6c303f96a1988b702731276a98785802 490 PRINTS PR00084 Mannitol dehydrogenase signature 249 264 2.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06490 6c303f96a1988b702731276a98785802 490 Gene3D G3DSA:3.40.50.720 1 282 5.1E-108 T 28-03-2018 AM348_RS06490 6c303f96a1988b702731276a98785802 490 SUPERFAMILY SSF48179 284 488 9.18E-67 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS06490 6c303f96a1988b702731276a98785802 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 218 465 2.7E-95 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS06490 6c303f96a1988b702731276a98785802 490 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 219 231 - T 28-03-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06490 6c303f96a1988b702731276a98785802 490 Gene3D G3DSA:1.10.1040.10 283 490 2.1E-68 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS06490 6c303f96a1988b702731276a98785802 490 SUPERFAMILY SSF51735 7 282 2.09E-96 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22785 67366756d21ed538cb3e454f38c3b175 361 SMART SM00450 1 131 1.7E-12 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS22785 67366756d21ed538cb3e454f38c3b175 361 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 15 345 2.4E-104 T 28-03-2018 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 AM348_RS22785 67366756d21ed538cb3e454f38c3b175 361 SUPERFAMILY SSF52821 11 63 1.57E-21 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS22785 67366756d21ed538cb3e454f38c3b175 361 SUPERFAMILY SSF52821 91 153 1.57E-21 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS22785 67366756d21ed538cb3e454f38c3b175 361 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 1 361 49.097 T 28-03-2018 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 AM348_RS22785 67366756d21ed538cb3e454f38c3b175 361 Gene3D G3DSA:3.40.250.10 3 140 5.7E-19 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Pfam PF07503 HypF finger 108 141 2.6E-14 T 28-03-2018 IPR011125 Zinc finger, HypF-type GO:0008270 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Pfam PF07503 HypF finger 158 190 5.6E-15 T 28-03-2018 IPR011125 Zinc finger, HypF-type GO:0008270 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Gene3D G3DSA:3.90.870.10 189 382 5.7E-49 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 SUPERFAMILY SSF55821 175 379 3.97E-46 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Gene3D G3DSA:3.30.420.40 566 717 8.5E-28 T 28-03-2018 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 PIRSF PIRSF006256 4 746 9.9E-274 T 28-03-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Gene3D G3DSA:3.30.70.100 3 97 3.5E-23 T 28-03-2018 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Pfam PF01300 Telomere recombination 209 373 1.6E-46 T 28-03-2018 IPR006070 YrdC-like domain GO:0003725 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 ProSitePatterns PS00150 Acylphosphatase signature 1. 13 23 - T 28-03-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 SUPERFAMILY SSF54975 8 91 1.7E-22 T 28-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 11 738 2.2E-298 T 28-03-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 AM348_RS10425 61670252a2a4061fb05f4ca46daf9a68 746 Pfam PF00708 Acylphosphatase 9 90 6.8E-19 T 28-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 4.3E-96 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 Pfam PF01578 Cytochrome C assembly protein 89 296 7.6E-55 T 28-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 630 6.1E-123 T 28-03-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 634 4.8E-297 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 624 637 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12945 d9fe7a4eb6e8eac776c2dd6d9ccdc0ab 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 4.6E-60 T 28-03-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS17840 f9edbe40158de251440505ba5d74bb06 186 SUPERFAMILY SSF55729 7 164 9.62E-41 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS17840 f9edbe40158de251440505ba5d74bb06 186 Gene3D G3DSA:3.40.630.30 6 174 5.1E-34 T 28-03-2018 AM348_RS17840 f9edbe40158de251440505ba5d74bb06 186 Pfam PF13302 Acetyltransferase (GNAT) domain 8 140 3.9E-20 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 PIRSF PIRSF039004 1 375 8.6E-131 T 28-03-2018 IPR020043 Amidohydrolase EF0837/AHA3915, putative AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 SUPERFAMILY SSF51556 51 316 1.98E-70 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 Pfam PF01979 Amidohydrolase family 47 333 7.2E-8 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 3 364 2.0E-175 T 28-03-2018 IPR020043 Amidohydrolase EF0837/AHA3915, putative AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 SUPERFAMILY SSF51338 317 365 2.96E-17 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 SUPERFAMILY SSF51338 1 51 2.96E-17 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 Gene3D G3DSA:3.20.20.140 58 315 6.4E-47 T 28-03-2018 AM348_RS02530 a25c40b2dfcff1ec1316042eaaab08e8 377 Gene3D G3DSA:2.30.40.10 1 57 2.8E-9 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 SUPERFAMILY SSF53720 2 473 2.49E-158 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 Gene3D G3DSA:3.40.309.10 260 456 5.4E-68 T 28-03-2018 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 Gene3D G3DSA:3.40.605.10 1 259 5.5E-94 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 TIGRFAM TIGR03374 ABALDH: 1-pyrroline dehydrogenase 2 473 1.7E-300 T 28-03-2018 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 Pfam PF00171 Aldehyde dehydrogenase family 13 470 6.9E-165 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS17135 acb321a898748e2a84e5e9acb6596398 475 Hamap MF_01275 Gamma-aminobutyraldehyde dehydrogenase [prr]. 1 474 79.83 T 28-03-2018 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 AM348_RS08810 e4a775119b2cfe71f9c65e7632f92ec3 140 Pfam PF06853 Protein of unknown function (DUF1249) 21 134 1.2E-42 T 28-03-2018 IPR009659 Protein of unknown function DUF1249 AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 Pfam PF00411 Ribosomal protein S11 19 128 3.4E-54 T 28-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.65 T 28-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 28-03-2018 IPR018102 Ribosomal S11, conserved site AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 PIRSF PIRSF002131 1 129 1.0E-52 T 28-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 Gene3D G3DSA:3.30.420.80 5 129 7.1E-45 T 28-03-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 SUPERFAMILY SSF53137 14 129 7.19E-48 T 28-03-2018 AM348_RS07455 653a5fe70b1fa0a38e59158e271cc203 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 2.7E-55 T 28-03-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 18 134 4.7E-24 T 28-03-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 615 743 8.2E-43 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 SUPERFAMILY SSF55904 610 754 1.7E-36 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 PIRSF PIRSF009393 1 755 1.9E-270 T 28-03-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 SUPERFAMILY SSF53383 140 607 1.63E-107 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 Gene3D G3DSA:3.90.1150.10 447 639 3.7E-54 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 Gene3D G3DSA:3.40.640.10 140 444 2.2E-41 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 Gene3D G3DSA:3.90.100.10 640 755 1.7E-28 T 28-03-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 140 590 1.9E-191 T 28-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM348_RS03175 f63ffa8319b8e0eb6dcd48665a66c834 755 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 381 395 - T 28-03-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 AM348_RS20495 02129ac625bcb60668268b07d00242e4 105 Gene3D G3DSA:2.30.30.390 1 105 7.7E-17 T 28-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM348_RS20495 02129ac625bcb60668268b07d00242e4 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 38.478 T 28-03-2018 IPR022866 Heat shock protein HspQ AM348_RS20495 02129ac625bcb60668268b07d00242e4 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 102 3.7E-34 T 28-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM348_RS20495 02129ac625bcb60668268b07d00242e4 105 SMART SM00992 3 102 8.0E-33 T 28-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM348_RS20495 02129ac625bcb60668268b07d00242e4 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 6.6E-19 T 28-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM348_RS20495 02129ac625bcb60668268b07d00242e4 105 SUPERFAMILY SSF141255 4 95 3.27E-29 T 28-03-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 AM348_RS05890 5f0f6222011709f0090f22160cfd0bd1 355 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 8 343 2.2E-144 T 28-03-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative AM348_RS05890 5f0f6222011709f0090f22160cfd0bd1 355 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 325 4.6E-62 T 28-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM348_RS05890 5f0f6222011709f0090f22160cfd0bd1 355 SUPERFAMILY SSF53756 6 344 1.13E-83 T 28-03-2018 AM348_RS05890 5f0f6222011709f0090f22160cfd0bd1 355 Gene3D G3DSA:3.40.50.2000 2 162 6.2E-36 T 28-03-2018 AM348_RS05890 5f0f6222011709f0090f22160cfd0bd1 355 Gene3D G3DSA:3.40.50.2000 165 347 2.2E-41 T 28-03-2018 AM348_RS21750 ebc3db60d4460fc019131277bc5bd359 547 Pfam PF06958 S-type Pyocin 300 441 2.5E-35 T 28-03-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 AM348_RS21750 ebc3db60d4460fc019131277bc5bd359 547 Pfam PF05638 Type VI secretion system effector, Hcp 6 138 6.7E-11 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS21750 ebc3db60d4460fc019131277bc5bd359 547 Gene3D G3DSA:2.30.110.20 2 148 6.7E-28 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS21750 ebc3db60d4460fc019131277bc5bd359 547 SUPERFAMILY SSF69369 276 460 1.14E-31 T 28-03-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 AM348_RS21750 ebc3db60d4460fc019131277bc5bd359 547 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 146 5.9E-33 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS21750 ebc3db60d4460fc019131277bc5bd359 547 SUPERFAMILY SSF141452 5 148 6.93E-25 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS01845 5583adce7dba41a00629f87637fa65c1 137 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 2.0E-38 T 28-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01845 5583adce7dba41a00629f87637fa65c1 137 Pfam PF03603 DNA polymerase III psi subunit 3 126 3.1E-43 T 28-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01845 5583adce7dba41a00629f87637fa65c1 137 PIRSF PIRSF029225 2 131 1.8E-46 T 28-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01845 5583adce7dba41a00629f87637fa65c1 137 SUPERFAMILY SSF102220 27 135 5.1E-32 T 28-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01845 5583adce7dba41a00629f87637fa65c1 137 TIGRFAM TIGR00664 DNA_III_psi: DNA polymerase III, psi subunit 1 125 1.5E-55 T 28-03-2018 IPR018382 DNA polymerase III, psi subunit, subgroup GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01845 5583adce7dba41a00629f87637fa65c1 137 Gene3D G3DSA:3.40.50.10220 35 129 1.0E-31 T 28-03-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 SUPERFAMILY SSF53807 25 299 1.28E-90 T 28-03-2018 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00690 Adhesin family signature 60 73 1.0E-40 T 28-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00690 Adhesin family signature 29 47 1.0E-40 T 28-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00690 Adhesin family signature 184 205 1.0E-40 T 28-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00690 Adhesin family signature 263 282 1.0E-40 T 28-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00690 Adhesin family signature 237 255 1.0E-40 T 28-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00690 Adhesin family signature 73 90 1.0E-40 T 28-03-2018 IPR006128 Adhesion lipoprotein GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 184 201 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 73 92 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 54 72 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 210 228 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 255 273 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 29 50 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 PRINTS PR00691 Adhesin B signature 233 250 1.9E-35 T 28-03-2018 IPR006129 Adhesin B GO:0007155 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 Gene3D G3DSA:3.40.50.1980 174 298 6.7E-29 T 28-03-2018 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 Gene3D G3DSA:3.40.50.1980 30 173 1.1E-44 T 28-03-2018 AM348_RS10310 8a6d6c2135fa0bfacfe030346ba40477 305 Pfam PF01297 Zinc-uptake complex component A periplasmic 32 295 4.0E-72 T 28-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.2E-18 T 28-03-2018 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 1.2E-18 T 28-03-2018 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 1.2E-18 T 28-03-2018 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 1.2E-18 T 28-03-2018 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 390 5.9E-131 T 28-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 Pfam PF01494 FAD binding domain 6 338 1.5E-28 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 Gene3D G3DSA:3.50.50.60 4 363 6.0E-47 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 294 307 - T 28-03-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 SUPERFAMILY SSF51905 6 178 2.59E-62 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22015 b1fab8c9b82c95ce3accaeae233415d8 391 SUPERFAMILY SSF51905 267 383 2.59E-62 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 465 50.014 T 28-03-2018 IPR023721 Multidrug resistance protein MdtD, putative AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 Gene3D G3DSA:1.20.1250.20 4 197 2.1E-32 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 Pfam PF07690 Major Facilitator Superfamily 15 405 8.4E-48 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 Gene3D G3DSA:1.20.1250.20 255 468 1.9E-22 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 2.2E-7 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 2.2E-7 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 2.2E-7 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 2.2E-7 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 160 184 2.2E-7 T 28-03-2018 AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 SUPERFAMILY SSF103473 244 451 2.62E-60 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 SUPERFAMILY SSF103473 8 194 2.62E-60 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS13625 2df65ac4eda86d54148d72a0c4b725bc 470 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 414 6.1E-69 T 28-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 SMART SM00487 14 201 3.9E-19 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 SUPERFAMILY SSF52540 21 445 7.16E-50 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 Pfam PF00270 DEAD/DEAH box helicase 34 175 4.5E-9 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 Gene3D G3DSA:3.40.50.300 195 364 1.8E-41 T 28-03-2018 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 SMART SM00847 403 491 1.0E-12 T 28-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 Pfam PF08482 ATP-dependent helicase C-terminal 679 811 1.9E-53 T 28-03-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 PIRSF PIRSF005496 15 824 0.0 T 28-03-2018 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 Gene3D G3DSA:3.40.50.300 18 177 2.7E-24 T 28-03-2018 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 SMART SM00490 245 343 1.4E-12 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 Pfam PF04408 Helicase associated domain (HA2) 404 459 4.4E-9 T 28-03-2018 IPR007502 Helicase-associated domain GO:0004386 AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 Pfam PF00271 Helicase conserved C-terminal domain 219 342 4.3E-11 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS00895 716d9ee2b3abe8bdfc05f3245cfc2e08 824 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 19 823 0.0 T 28-03-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 AM348_RS05725 ab1ca60d70f92eb3fe6492daae8caaab 460 Gene3D G3DSA:1.20.1250.20 14 214 5.4E-14 T 28-03-2018 AM348_RS05725 ab1ca60d70f92eb3fe6492daae8caaab 460 Pfam PF13347 MFS/sugar transport protein 13 429 2.1E-100 T 28-03-2018 AM348_RS05725 ab1ca60d70f92eb3fe6492daae8caaab 460 SUPERFAMILY SSF103473 13 426 1.26E-28 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05725 ab1ca60d70f92eb3fe6492daae8caaab 460 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 11 444 9.0E-151 T 28-03-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 AM348_RS05725 ab1ca60d70f92eb3fe6492daae8caaab 460 Gene3D G3DSA:1.20.1250.20 215 454 1.7E-11 T 28-03-2018 AM348_RS05725 ab1ca60d70f92eb3fe6492daae8caaab 460 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 62 87 - T 28-03-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 AM348_RS15345 fe6d2e3e6eaeda3da59140ef9e8c8f47 581 Gene3D G3DSA:3.40.710.10 229 572 3.0E-78 T 28-03-2018 AM348_RS15345 fe6d2e3e6eaeda3da59140ef9e8c8f47 581 SUPERFAMILY SSF56601 228 556 1.62E-87 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS15345 fe6d2e3e6eaeda3da59140ef9e8c8f47 581 Gene3D G3DSA:3.90.1310.10 29 228 1.5E-43 T 28-03-2018 AM348_RS15345 fe6d2e3e6eaeda3da59140ef9e8c8f47 581 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 547 8.0E-78 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS15345 fe6d2e3e6eaeda3da59140ef9e8c8f47 581 Pfam PF03717 Penicillin-binding Protein dimerisation domain 60 214 7.4E-18 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS15345 fe6d2e3e6eaeda3da59140ef9e8c8f47 581 SUPERFAMILY SSF56519 56 227 3.27E-46 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS18155 d1bc164f59627b949758b0c02a0515b0 201 Gene3D G3DSA:3.40.30.10 1 98 6.0E-19 T 28-03-2018 AM348_RS18155 d1bc164f59627b949758b0c02a0515b0 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 189 5.6E-12 T 28-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM348_RS18155 d1bc164f59627b949758b0c02a0515b0 201 Gene3D G3DSA:1.20.1050.10 99 200 2.5E-22 T 28-03-2018 AM348_RS18155 d1bc164f59627b949758b0c02a0515b0 201 Pfam PF13409 Glutathione S-transferase, N-terminal domain 14 75 6.0E-9 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS18155 d1bc164f59627b949758b0c02a0515b0 201 SUPERFAMILY SSF52833 1 79 2.01E-17 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS18155 d1bc164f59627b949758b0c02a0515b0 201 SUPERFAMILY SSF47616 83 199 6.68E-28 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS06865 92606720172676cc674e6e9738c41f34 446 Pfam PF02447 GntP family permease 5 441 1.5E-166 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS06865 92606720172676cc674e6e9738c41f34 446 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 4 444 2.3E-176 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS06865 92606720172676cc674e6e9738c41f34 446 PIRSF PIRSF002746 1 446 9.3E-155 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 Pfam PF08220 DeoR-like helix-turn-helix domain 8 59 2.7E-14 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 SMART SM01134 73 234 1.4E-59 T 28-03-2018 AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 Pfam PF00455 DeoR C terminal sensor domain 76 233 1.1E-46 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 Gene3D G3DSA:1.10.10.10 1 80 8.7E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 Gene3D G3DSA:3.40.50.1360 81 240 7.6E-31 T 28-03-2018 AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 SUPERFAMILY SSF100950 75 235 1.88E-29 T 28-03-2018 AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS21010 7fb685c9d7a373c15accd93cae8a5cde 252 SMART SM00420 8 57 9.4E-14 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 61 79 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Pfam PF00384 Molybdopterin oxidoreductase 119 576 1.1E-111 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Gene3D G3DSA:3.90.55.10 540 611 1.0E-22 T 28-03-2018 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Gene3D G3DSA:3.40.228.10 612 677 9.9E-14 T 28-03-2018 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Gene3D G3DSA:2.20.25.90 49 121 8.2E-19 T 28-03-2018 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 SUPERFAMILY SSF50692 641 814 7.69E-40 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Gene3D G3DSA:3.40.228.10 205 483 4.0E-64 T 28-03-2018 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Gene3D G3DSA:2.40.40.20 678 814 1.3E-36 T 28-03-2018 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 731 758 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 14 814 0.0 T 28-03-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 SUPERFAMILY SSF53706 57 697 7.2E-181 T 28-03-2018 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 56 116 9.5E-18 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 517 534 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 Pfam PF01568 Molydopterin dinucleotide binding domain 695 806 1.7E-28 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS20825 c5d46194dfcfdd8d276f5da1e631a226 814 SMART SM00926 56 116 1.8E-9 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS07530 a505792ecbac1fd9c83e1836a83ad973 190 Pfam PF01300 Telomere recombination 16 182 1.4E-42 T 28-03-2018 IPR006070 YrdC-like domain GO:0003725 AM348_RS07530 a505792ecbac1fd9c83e1836a83ad973 190 SUPERFAMILY SSF55821 6 186 2.69E-56 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS07530 a505792ecbac1fd9c83e1836a83ad973 190 Gene3D G3DSA:3.90.870.10 1 188 4.9E-52 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS07530 a505792ecbac1fd9c83e1836a83ad973 190 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 7 188 40.734 T 28-03-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 Hamap MF_01987 Ribokinase [rbsK]. 5 304 26.022 T 28-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 PRINTS PR00990 Ribokinase signature 36 55 9.4E-38 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 PRINTS PR00990 Ribokinase signature 9 30 9.4E-38 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 PRINTS PR00990 Ribokinase signature 220 231 9.4E-38 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 PRINTS PR00990 Ribokinase signature 108 121 9.4E-38 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 PRINTS PR00990 Ribokinase signature 176 191 9.4E-38 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 SUPERFAMILY SSF53613 7 307 1.15E-85 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 Gene3D G3DSA:3.40.1190.20 1 309 7.2E-86 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 Pfam PF00294 pfkB family carbohydrate kinase 6 297 1.4E-77 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS05185 b9c1a1857e7d0a9888826bcb5f16b54f 309 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 8 302 3.4E-108 T 28-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM348_RS13975 d456235885facd2bfd1960064c4ecf21 150 TIGRFAM TIGR02528 EutP: ethanolamine utilization protein, EutP 2 141 1.7E-57 T 28-03-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 AM348_RS13975 d456235885facd2bfd1960064c4ecf21 150 SUPERFAMILY SSF52540 3 141 6.25E-17 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13975 d456235885facd2bfd1960064c4ecf21 150 Gene3D G3DSA:3.40.50.300 1 146 2.0E-14 T 28-03-2018 AM348_RS13975 d456235885facd2bfd1960064c4ecf21 150 PIRSF PIRSF036409 1 146 6.9E-57 T 28-03-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 AM348_RS13975 d456235885facd2bfd1960064c4ecf21 150 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 1 141 3.6E-58 T 28-03-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 AM348_RS10605 f4ab830464680782d7bb139c18776697 400 Pfam PF00571 CBS domain 345 393 8.0E-6 T 28-03-2018 IPR000644 CBS domain AM348_RS10605 f4ab830464680782d7bb139c18776697 400 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS10605 f4ab830464680782d7bb139c18776697 400 Gene3D G3DSA:3.10.580.10 288 399 4.5E-12 T 28-03-2018 AM348_RS10605 f4ab830464680782d7bb139c18776697 400 Pfam PF00005 ABC transporter 44 192 7.0E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS10605 f4ab830464680782d7bb139c18776697 400 SUPERFAMILY SSF54631 277 394 1.34E-12 T 28-03-2018 AM348_RS10605 f4ab830464680782d7bb139c18776697 400 SUPERFAMILY SSF52540 43 270 9.84E-77 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10605 f4ab830464680782d7bb139c18776697 400 SMART SM00382 53 242 7.8E-19 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10605 f4ab830464680782d7bb139c18776697 400 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 394 8.4E-189 T 28-03-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 AM348_RS10605 f4ab830464680782d7bb139c18776697 400 Gene3D G3DSA:3.40.50.300 2 280 7.5E-76 T 28-03-2018 AM348_RS08740 d8340c87cf341299c1d8abc5ec4ba88a 68 Hamap MF_00525 Surface composition regulator [glgS]. 2 61 20.518 T 28-03-2018 IPR015065 Surface composition regulator AM348_RS08740 d8340c87cf341299c1d8abc5ec4ba88a 68 Pfam PF08971 Glycogen synthesis protein 3 68 1.2E-38 T 28-03-2018 IPR015065 Surface composition regulator AM348_RS08740 d8340c87cf341299c1d8abc5ec4ba88a 68 SUPERFAMILY SSF109747 3 68 2.62E-39 T 28-03-2018 IPR015065 Surface composition regulator AM348_RS08740 d8340c87cf341299c1d8abc5ec4ba88a 68 ProDom PD054490 GLYCOGEN GLGS SYNTHESIS BIOSYNTHESIS DEPENDENT BIOSYNTHESIS RPOS 3D-STRUCTURE 13 68 9.0E-26 T 28-03-2018 IPR015065 Surface composition regulator AM348_RS08740 d8340c87cf341299c1d8abc5ec4ba88a 68 Gene3D G3DSA:1.20.970.20 11 60 1.2E-26 T 28-03-2018 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 SMART SM00421 135 192 1.7E-25 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 Gene3D G3DSA:3.40.50.2300 1 123 1.9E-27 T 28-03-2018 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 1.9E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 1.9E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 1.9E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 Gene3D G3DSA:1.10.10.10 124 195 6.2E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 190 6.3E-23 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 SUPERFAMILY SSF46894 130 193 3.74E-20 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 SUPERFAMILY SSF52172 1 125 2.28E-27 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 ProSitePatterns PS00622 LuxR-type HTH domain signature. 152 179 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 Pfam PF00072 Response regulator receiver domain 4 112 3.4E-25 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS05545 5728a78bf2df638a6884abcc943e9035 197 SMART SM00448 2 112 3.9E-28 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 Pfam PF04055 Radical SAM superfamily 27 180 1.5E-8 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 Gene3D G3DSA:3.20.20.70 24 198 1.6E-12 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 2.3E-112 T 28-03-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 PIRSF PIRSF000370 1 223 5.9E-73 T 28-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 SUPERFAMILY SSF102114 24 121 1.44E-7 T 28-03-2018 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 6.9E-14 T 28-03-2018 AM348_RS10050 0563d05dc89246308f8b8f221b174e75 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 40.414 T 28-03-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 AM348_RS15225 384e26c0a8279e0c22c30278871033e3 220 Gene3D G3DSA:3.30.420.10 1 162 1.6E-29 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS15225 384e26c0a8279e0c22c30278871033e3 220 Pfam PF00929 Exonuclease 4 147 3.9E-15 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS15225 384e26c0a8279e0c22c30278871033e3 220 SMART SM00479 1 156 9.2E-38 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS15225 384e26c0a8279e0c22c30278871033e3 220 SUPERFAMILY SSF53098 4 184 1.11E-33 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS21305 063899e7c3b44818c78ec7369534be07 150 SUPERFAMILY SSF54690 5 150 1.7E-53 T 28-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS21305 063899e7c3b44818c78ec7369534be07 150 Gene3D G3DSA:3.90.1170.40 2 149 3.0E-55 T 28-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS21305 063899e7c3b44818c78ec7369534be07 150 Pfam PF02391 MoaE protein 10 121 9.5E-36 T 28-03-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.0E-33 T 28-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.0E-33 T 28-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.0E-33 T 28-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 28-03-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.215 T 28-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 Gene3D G3DSA:3.90.930.12 86 177 3.2E-39 T 28-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 SUPERFAMILY SSF56053 1 82 2.49E-23 T 28-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.0E-72 T 28-03-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 PIRSF PIRSF002162 1 177 8.4E-43 T 28-03-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 SUPERFAMILY SSF56053 83 177 7.85E-36 T 28-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 Gene3D G3DSA:3.90.930.12 5 85 2.2E-24 T 28-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 Pfam PF00347 Ribosomal protein L6 90 164 8.2E-19 T 28-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07415 2946bc3b4df1f9e44af809d3d76ab257 177 Pfam PF00347 Ribosomal protein L6 11 82 1.3E-17 T 28-03-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS04730 a9325bb7be1a24ca912d7703e88771c5 483 PIRSF PIRSF006247 1 483 6.2E-185 T 28-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM348_RS04730 a9325bb7be1a24ca912d7703e88771c5 483 Pfam PF02386 Cation transport protein 37 477 4.4E-93 T 28-03-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 AM348_RS04730 a9325bb7be1a24ca912d7703e88771c5 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 1.4E-128 T 28-03-2018 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Gene3D G3DSA:3.30.2070.10 795 835 1.5E-5 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Gene3D G3DSA:4.10.1200.10 1 26 6.6E-15 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 8.2E-17 T 28-03-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Pfam PF00384 Molybdopterin oxidoreductase 108 833 1.8E-192 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Gene3D G3DSA:2.40.40.20 1048 1238 4.7E-47 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 SMART SM00926 43 105 1.6E-8 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1235 0.0 T 28-03-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Gene3D G3DSA:3.40.228.10 225 660 1.4E-105 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1125 1152 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Pfam PF01568 Molydopterin dinucleotide binding domain 1088 1202 4.8E-21 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 SUPERFAMILY SSF53706 4 1070 0.0 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 777 794 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Gene3D G3DSA:2.20.25.90 55 98 9.1E-29 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 Gene3D G3DSA:3.40.50.740 108 212 1.2E-4 T 28-03-2018 AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 SUPERFAMILY SSF50692 1082 1235 1.33E-47 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS15875 c7de2abf17ab766f01469f739d4d0d4a 1247 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS22295 0ff7b780b39b2cc81e85d05c8dfee01f 205 SUPERFAMILY SSF110849 45 174 6.28E-25 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS22295 0ff7b780b39b2cc81e85d05c8dfee01f 205 Gene3D G3DSA:3.90.1530.10 39 146 1.2E-12 T 28-03-2018 AM348_RS22295 0ff7b780b39b2cc81e85d05c8dfee01f 205 Pfam PF02195 ParB-like nuclease domain 48 141 1.8E-15 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS22295 0ff7b780b39b2cc81e85d05c8dfee01f 205 SMART SM00470 47 142 5.6E-11 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS16305 a3f662a1bcfcfddef4e6bf65e6b87b4d 239 SUPERFAMILY SSF102712 3 89 1.57E-10 T 28-03-2018 AM348_RS16305 a3f662a1bcfcfddef4e6bf65e6b87b4d 239 SUPERFAMILY SSF54001 92 222 9.12E-14 T 28-03-2018 AM348_RS16305 a3f662a1bcfcfddef4e6bf65e6b87b4d 239 Pfam PF00877 NlpC/P60 family 103 216 1.7E-11 T 28-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM348_RS16305 a3f662a1bcfcfddef4e6bf65e6b87b4d 239 Gene3D G3DSA:3.90.1720.10 47 231 1.2E-15 T 28-03-2018 AM348_RS16305 a3f662a1bcfcfddef4e6bf65e6b87b4d 239 Pfam PF14464 Prokaryotic homologs of the JAB domain 9 90 1.4E-6 T 28-03-2018 IPR028090 JAB domain, prokaryotic AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 Pfam PF01568 Molydopterin dinucleotide binding domain 645 756 9.4E-9 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 Pfam PF00384 Molybdopterin oxidoreductase 111 518 1.3E-24 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 Gene3D G3DSA:3.40.50.740 112 307 5.0E-34 T 28-03-2018 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 PIRSF PIRSF000144 2 762 0.0 T 28-03-2018 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 SUPERFAMILY SSF50692 641 762 9.95E-17 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 Gene3D G3DSA:2.40.40.20 613 762 1.0E-20 T 28-03-2018 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 15 761 2.5E-293 T 28-03-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 SUPERFAMILY SSF53706 49 629 9.68E-138 T 28-03-2018 AM348_RS09025 dd21ee184be717df270ac1a5143b5112 762 Gene3D G3DSA:3.40.50.740 327 612 1.1E-41 T 28-03-2018 AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 Gene3D G3DSA:3.30.70.20 4 61 8.5E-9 T 28-03-2018 AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 Pfam PF13183 4Fe-4S dicluster domain 6 70 5.1E-10 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 Gene3D G3DSA:3.30.70.20 62 387 2.2E-4 T 28-03-2018 AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 56 67 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 3 395 1.7E-228 T 28-03-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0006810|GO:0016020 AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 Pfam PF02754 Cysteine-rich domain 293 376 1.3E-14 T 28-03-2018 IPR004017 Cysteine-rich domain AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 Pfam PF02754 Cysteine-rich domain 163 249 4.2E-15 T 28-03-2018 IPR004017 Cysteine-rich domain AM348_RS12755 2d8d88bc957be5e71d8e0182388f99d8 396 SUPERFAMILY SSF46548 6 82 2.27E-16 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.4E-58 T 28-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 Gene3D G3DSA:3.90.1170.10 1 136 5.2E-50 T 28-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 1.7E-46 T 28-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.894 T 28-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 28-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 9.6E-40 T 28-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 9.6E-40 T 28-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 9.6E-40 T 28-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 9.6E-40 T 28-03-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 SUPERFAMILY SSF54686 3 133 3.27E-54 T 28-03-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 AM348_RS07375 9ca18dc7b9b89f80a362850de52e64fc 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 28-03-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS15195 129dd3292a53bec2d142c1cbefc12964 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 28-03-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM348_RS15195 129dd3292a53bec2d142c1cbefc12964 213 Gene3D G3DSA:3.20.20.70 1 213 1.3E-31 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS15195 129dd3292a53bec2d142c1cbefc12964 213 SUPERFAMILY SSF51569 4 209 5.13E-69 T 28-03-2018 AM348_RS15195 129dd3292a53bec2d142c1cbefc12964 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 28-03-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM348_RS15195 129dd3292a53bec2d142c1cbefc12964 213 Pfam PF01081 KDPG and KHG aldolase 9 203 1.4E-92 T 28-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM348_RS15195 129dd3292a53bec2d142c1cbefc12964 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 7.7E-87 T 28-03-2018 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 SUPERFAMILY SSF51366 34 260 3.33E-78 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 Gene3D G3DSA:3.20.20.70 31 262 8.1E-69 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 SMART SM00934 36 257 1.0E-98 T 28-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 35 256 4.1E-51 T 28-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 37 257 6.7E-55 T 28-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 34 262 40.09 T 28-03-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS16505 445a9019b46b754801476395b06f30b2 265 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 88 101 - T 28-03-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 PIRSF PIRSF000535 1 309 4.2E-107 T 28-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 Gene3D G3DSA:2.20.150.10 11 45 1.0E-6 T 28-03-2018 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 Pfam PF00294 pfkB family carbohydrate kinase 12 295 1.0E-62 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 SUPERFAMILY SSF53613 4 298 6.08E-64 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 Gene3D G3DSA:3.40.1190.20 46 308 1.8E-45 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS18900 7b45ed12bc5b0d90a3fd36890f6d917e 309 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 305 3.2E-94 T 28-03-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 Pfam PF07690 Major Facilitator Superfamily 34 402 2.1E-46 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 419 6.8E-147 T 28-03-2018 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 ProSitePatterns PS00942 glpT family of transporters signature. 150 166 - T 28-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 Gene3D G3DSA:1.20.1250.20 18 222 5.4E-36 T 28-03-2018 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 PIRSF PIRSF002808 5 454 6.3E-107 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 Gene3D G3DSA:1.20.1250.20 245 458 1.7E-28 T 28-03-2018 AM348_RS12205 400e8f759a1f0a44c5542c8a6bca972d 463 SUPERFAMILY SSF103473 16 442 3.4E-76 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 Gene3D G3DSA:3.40.50.300 2 239 3.2E-67 T 28-03-2018 AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 SUPERFAMILY SSF50331 237 355 4.37E-30 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 Gene3D G3DSA:2.40.50.140 290 341 2.5E-16 T 28-03-2018 AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 SUPERFAMILY SSF52540 4 242 3.74E-83 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 Pfam PF08402 TOBE domain 278 348 2.2E-11 T 28-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 Gene3D G3DSA:2.40.50.100 240 289 8.1E-12 T 28-03-2018 AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 SMART SM00382 29 326 2.8E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 Pfam PF00005 ABC transporter 21 162 3.3E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06805 3e0cf4cca31d9c11992166fb0426d204 356 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 SUPERFAMILY SSF50494 8 60 1.89E-64 T 28-03-2018 IPR009003 Peptidase S1, PA clan AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 SUPERFAMILY SSF50494 114 301 1.89E-64 T 28-03-2018 IPR009003 Peptidase S1, PA clan AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 PRINTS PR00834 HtrA/DegQ protease family signature 332 344 1.7E-60 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 PRINTS PR00834 HtrA/DegQ protease family signature 127 139 1.7E-60 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 PRINTS PR00834 HtrA/DegQ protease family signature 148 168 1.7E-60 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 PRINTS PR00834 HtrA/DegQ protease family signature 189 213 1.7E-60 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 PRINTS PR00834 HtrA/DegQ protease family signature 246 263 1.7E-60 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 1.7E-60 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Gene3D G3DSA:2.40.10.10 164 282 6.7E-44 T 28-03-2018 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 SUPERFAMILY SSF50156 403 473 1.97E-17 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 290 370 7.3E-16 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 394 466 2.7E-13 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Gene3D G3DSA:2.30.42.10 392 476 2.6E-18 T 28-03-2018 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 SMART SM00228 292 374 5.5E-15 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 SMART SM00228 396 469 2.4E-12 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 475 1.8E-167 T 28-03-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 SUPERFAMILY SSF50156 274 383 6.26E-23 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Gene3D G3DSA:2.40.10.10 28 163 7.7E-32 T 28-03-2018 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Gene3D G3DSA:2.30.42.10 287 391 8.0E-27 T 28-03-2018 AM348_RS00805 0c7897597000dd3171cc04bd2810f155 477 Pfam PF13365 Trypsin-like peptidase domain 117 253 1.1E-32 T 28-03-2018 AM348_RS00820 8ea422a4eb179ba42fae99b292944d75 232 Pfam PF01048 Phosphorylase superfamily 2 226 4.9E-47 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS00820 8ea422a4eb179ba42fae99b292944d75 232 SUPERFAMILY SSF53167 1 229 9.95E-74 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS00820 8ea422a4eb179ba42fae99b292944d75 232 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 47.425 T 28-03-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS00820 8ea422a4eb179ba42fae99b292944d75 232 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 229 1.8E-130 T 28-03-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS00820 8ea422a4eb179ba42fae99b292944d75 232 Gene3D G3DSA:3.40.50.1580 1 232 1.0E-55 T 28-03-2018 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 Gene3D G3DSA:3.40.50.1360 1 137 1.7E-39 T 28-03-2018 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 2.8E-71 T 28-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.4E-58 T 28-03-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 SUPERFAMILY SSF100950 1 146 3.86E-46 T 28-03-2018 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.304 T 28-03-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 SUPERFAMILY SSF75445 127 198 1.19E-23 T 28-03-2018 AM348_RS09385 3e8f23800e133705ffd0ee6400da452b 219 Gene3D G3DSA:3.30.70.260 138 196 3.5E-23 T 28-03-2018 AM348_RS11485 260bb60e96a6591f53d2fb489a6c33b5 326 Pfam PF03824 High-affinity nickel-transport protein 189 317 6.9E-21 T 28-03-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AM348_RS11485 260bb60e96a6591f53d2fb489a6c33b5 326 Pfam PF03824 High-affinity nickel-transport protein 73 179 1.9E-22 T 28-03-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 SUPERFAMILY SSF52540 472 700 4.93E-59 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 SUPERFAMILY SSF90123 155 466 1.06E-51 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 SMART SM00382 510 703 3.4E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 Pfam PF00005 ABC transporter 505 650 9.4E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 Gene3D G3DSA:1.20.1560.10 144 473 5.7E-37 T 28-03-2018 AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 Gene3D G3DSA:3.90.70.10 16 135 4.6E-7 T 28-03-2018 AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 19 712 9.1E-233 T 28-03-2018 IPR017750 ATPase, type I secretion system AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 Pfam PF00664 ABC transporter transmembrane region 172 434 5.4E-27 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS11000 336bf8bfd57ee74a0faa75fdeba536f8 728 Gene3D G3DSA:3.40.50.300 480 713 1.2E-55 T 28-03-2018 AM348_RS15550 3af2b1fce180c533ecfffabcccb9c5d1 304 Pfam PF02016 LD-carboxypeptidase 6 284 9.7E-65 T 28-03-2018 IPR003507 Peptidase family S66 AM348_RS15550 3af2b1fce180c533ecfffabcccb9c5d1 304 PIRSF PIRSF028757 1 300 1.1E-83 T 28-03-2018 IPR003507 Peptidase family S66 AM348_RS15550 3af2b1fce180c533ecfffabcccb9c5d1 304 SUPERFAMILY SSF52317 4 160 3.3E-32 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS15550 3af2b1fce180c533ecfffabcccb9c5d1 304 Gene3D G3DSA:3.50.30.60 143 300 1.8E-40 T 28-03-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain AM348_RS15550 3af2b1fce180c533ecfffabcccb9c5d1 304 SUPERFAMILY SSF141986 138 290 5.62E-41 T 28-03-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain AM348_RS15550 3af2b1fce180c533ecfffabcccb9c5d1 304 Gene3D G3DSA:3.40.50.10740 1 142 3.8E-39 T 28-03-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain AM348_RS16525 b35d41c48eca8f7d71210eb7b214379c 60 Hamap MF_01641 UPF0509 protein YciZ [yciZ]. 1 60 24.656 T 28-03-2018 IPR020887 Uncharacterised protein family UPF0509 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 SMART SM00421 127 184 5.0E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 ProSitePatterns PS00622 LuxR-type HTH domain signature. 144 171 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 SUPERFAMILY SSF46894 121 186 9.86E-15 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 Gene3D G3DSA:1.10.10.10 42 189 1.2E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 Pfam PF00196 Bacterial regulatory proteins, luxR family 129 180 1.8E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 172 1.8E-10 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 130 144 1.8E-10 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22560 099f278a8a6f16aadee5526b72fc02d5 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 160 1.8E-10 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 SUPERFAMILY SSF46689 16 91 2.44E-18 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 SUPERFAMILY SSF48498 87 211 2.92E-42 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 Pfam PF08362 YcdC-like protein, C-terminal region 70 211 1.2E-58 T 28-03-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 Gene3D G3DSA:1.10.10.60 1 69 9.3E-19 T 28-03-2018 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 6.6E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 6.6E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 3.0E-13 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS20180 bc8c090ee17aef462a18e9e495183a73 212 Gene3D G3DSA:1.10.357.10 70 212 6.0E-25 T 28-03-2018 AM348_RS03215 439a734d76327676dfeee75136ab7ccb 332 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 23 312 3.0E-86 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS03215 439a734d76327676dfeee75136ab7ccb 332 TIGRFAM TIGR00793 kdgT: 2-keto-3-deoxygluconate transporter 1 312 4.4E-163 T 28-03-2018 IPR018395 2-keto-3-deoxygluconate permease, subgroup GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS03215 439a734d76327676dfeee75136ab7ccb 332 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 318 36.896 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS03215 439a734d76327676dfeee75136ab7ccb 332 Pfam PF03812 2-keto-3-deoxygluconate permease 3 312 4.1E-116 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS10345 75db30e1bfdd8c6393c4399c47fc46bd 290 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 76 289 2.2E-98 T 28-03-2018 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 AM348_RS10345 75db30e1bfdd8c6393c4399c47fc46bd 290 Gene3D G3DSA:3.40.50.300 104 259 6.7E-21 T 28-03-2018 AM348_RS10345 75db30e1bfdd8c6393c4399c47fc46bd 290 SUPERFAMILY SSF52540 88 286 4.37E-33 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10345 75db30e1bfdd8c6393c4399c47fc46bd 290 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 106 267 1.5E-34 T 28-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM348_RS10345 75db30e1bfdd8c6393c4399c47fc46bd 290 PIRSF PIRSF005624 70 290 1.4E-93 T 28-03-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 Pfam PF00425 chorismate binding enzyme 191 444 2.2E-91 T 28-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 108 448 3.8E-133 T 28-03-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 SUPERFAMILY SSF56322 5 452 4.97E-144 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 Pfam PF04715 Anthranilate synthase component I, N terminal region 22 153 1.8E-24 T 28-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 Gene3D G3DSA:3.60.120.10 2 454 9.5E-153 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 PRINTS PR00095 Anthranilate synthase component I signature 386 400 1.9E-18 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 PRINTS PR00095 Anthranilate synthase component I signature 401 415 1.9E-18 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 PRINTS PR00095 Anthranilate synthase component I signature 306 319 1.9E-18 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS15410 5217860f4a31e09f4faa6738a415f303 454 PRINTS PR00095 Anthranilate synthase component I signature 292 305 1.9E-18 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS04130 928c1422e586067c21430999208e84dc 334 Gene3D G3DSA:3.30.360.10 163 308 1.0E-48 T 28-03-2018 AM348_RS04130 928c1422e586067c21430999208e84dc 334 SUPERFAMILY SSF51735 1 172 1.12E-50 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04130 928c1422e586067c21430999208e84dc 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 6.0E-34 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS04130 928c1422e586067c21430999208e84dc 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 2.2E-124 T 28-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS04130 928c1422e586067c21430999208e84dc 334 Gene3D G3DSA:3.40.50.720 1 162 2.2E-45 T 28-03-2018 AM348_RS04130 928c1422e586067c21430999208e84dc 334 SMART SM00859 3 146 9.4E-56 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS04130 928c1422e586067c21430999208e84dc 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 28-03-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS04130 928c1422e586067c21430999208e84dc 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 2.0E-18 T 28-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS04130 928c1422e586067c21430999208e84dc 334 SUPERFAMILY SSF55347 154 308 4.02E-49 T 28-03-2018 AM348_RS04130 928c1422e586067c21430999208e84dc 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 38.174 T 28-03-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS12730 f6878431ba5ad7961c47dd6526008911 379 PIRSF PIRSF000390 1 379 3.7E-113 T 28-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM348_RS12730 f6878431ba5ad7961c47dd6526008911 379 Gene3D G3DSA:3.40.640.10 3 245 5.7E-49 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS12730 f6878431ba5ad7961c47dd6526008911 379 Gene3D G3DSA:3.90.1150.10 246 379 1.0E-36 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS12730 f6878431ba5ad7961c47dd6526008911 379 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 70.562 T 28-03-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 AM348_RS12730 f6878431ba5ad7961c47dd6526008911 379 SUPERFAMILY SSF53383 4 376 6.46E-114 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS12730 f6878431ba5ad7961c47dd6526008911 379 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 374 6.8E-134 T 28-03-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase AM348_RS08895 eca14cec9305fe26d61aed94bede18b7 151 Pfam PF01230 HIT domain 11 77 2.4E-11 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS08895 eca14cec9305fe26d61aed94bede18b7 151 Gene3D G3DSA:3.30.428.10 1 151 3.0E-29 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS08895 eca14cec9305fe26d61aed94bede18b7 151 PRINTS PR00332 Histidine triad family signature 25 43 7.2E-7 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS08895 eca14cec9305fe26d61aed94bede18b7 151 PRINTS PR00332 Histidine triad family signature 4 20 7.2E-7 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS08895 eca14cec9305fe26d61aed94bede18b7 151 SUPERFAMILY SSF54197 1 111 1.04E-28 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS05920 87b7a9c15593c55784663baf84e99cba 320 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 77 308 3.0E-76 T 28-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM348_RS05920 87b7a9c15593c55784663baf84e99cba 320 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 315 8.1E-129 T 28-03-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 AM348_RS05920 87b7a9c15593c55784663baf84e99cba 320 SUPERFAMILY SSF53756 1 315 1.65E-72 T 28-03-2018 AM348_RS05920 87b7a9c15593c55784663baf84e99cba 320 Gene3D G3DSA:3.40.50.2000 1 163 7.1E-40 T 28-03-2018 AM348_RS05920 87b7a9c15593c55784663baf84e99cba 320 Gene3D G3DSA:3.40.50.2000 164 318 8.8E-33 T 28-03-2018 AM348_RS02890 a5868a6eda136c9becf9e31386f13420 316 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 309 29.607 T 28-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AM348_RS02890 a5868a6eda136c9becf9e31386f13420 316 Gene3D G3DSA:3.40.50.300 8 203 1.5E-60 T 28-03-2018 AM348_RS02890 a5868a6eda136c9becf9e31386f13420 316 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 300 4.3E-125 T 28-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AM348_RS02890 a5868a6eda136c9becf9e31386f13420 316 SUPERFAMILY SSF52540 13 157 1.98E-18 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02890 a5868a6eda136c9becf9e31386f13420 316 Pfam PF01715 IPP transferase 46 290 1.2E-85 T 28-03-2018 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 AM348_RS02890 a5868a6eda136c9becf9e31386f13420 316 Gene3D G3DSA:1.10.287.890 207 289 9.9E-25 T 28-03-2018 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 105 160 8.0E-26 T 28-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 Gene3D G3DSA:1.10.645.10 413 596 9.3E-32 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 SUPERFAMILY SSF143243 25 229 8.37E-58 T 28-03-2018 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 SUPERFAMILY SSF56762 225 600 6.15E-119 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 Gene3D G3DSA:1.10.645.10 211 412 6.4E-46 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 16 600 72.005 T 28-03-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 211 600 41.661 T 28-03-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 50 177 1.1E-38 T 28-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 215 600 7.2E-176 T 28-03-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 252 263 - T 28-03-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 49 176 1.4E-42 T 28-03-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12590 2f308b458ec3c758a841362f5f307bc0 600 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 329 600 3.9E-102 T 28-03-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 7.2E-27 T 28-03-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Gene3D G3DSA:3.40.50.720 230 420 1.1E-50 T 28-03-2018 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 PIRSF PIRSF500136 1 420 3.1E-147 T 28-03-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Gene3D G3DSA:1.20.5.170 206 229 1.0E-14 T 28-03-2018 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 SMART SM00984 324 420 3.3E-22 T 28-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 80.824 T 28-03-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 188 1.3E-57 T 28-03-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 4.4E-18 T 28-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 SUPERFAMILY SSF52413 310 419 1.96E-25 T 28-03-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 SUPERFAMILY SSF51735 5 198 3.09E-45 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 SUPERFAMILY SSF48179 206 299 2.04E-28 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 PIRSF PIRSF000124 4 419 5.4E-77 T 28-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 Gene3D G3DSA:3.40.50.720 4 205 2.1E-43 T 28-03-2018 AM348_RS05020 c1c49ce337baa35b7a4c4c8ef7c25e20 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 3.9E-119 T 28-03-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.7E-12 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 5.7E-12 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 5.7E-12 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 Gene3D G3DSA:3.50.50.60 113 238 2.1E-26 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 SUPERFAMILY SSF51905 145 308 8.42E-27 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 Gene3D G3DSA:3.50.50.60 1 112 4.7E-13 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 Gene3D G3DSA:3.50.50.60 240 320 1.6E-8 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 Gene3D G3DSA:3.30.390.30 321 400 1.5E-19 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 3.3E-19 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.3E-19 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 3.3E-19 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 3.3E-19 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 3.3E-19 T 28-03-2018 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 SUPERFAMILY SSF55424 311 399 3.16E-19 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 SUPERFAMILY SSF51905 3 190 8.55E-39 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 Pfam PF14759 Reductase C-terminal 318 399 9.7E-20 T 28-03-2018 IPR028202 Reductase, C-terminal AM348_RS11385 bf931ead9986cf65a6f538dc2a09604d 400 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 298 1.6E-54 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15835 cd6547f13da5e7ed6333c013d9872c79 262 SUPERFAMILY SSF52540 4 234 1.36E-67 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15835 cd6547f13da5e7ed6333c013d9872c79 262 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 24 254 9.5E-102 T 28-03-2018 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 AM348_RS15835 cd6547f13da5e7ed6333c013d9872c79 262 Pfam PF00005 ABC transporter 24 166 2.1E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS15835 cd6547f13da5e7ed6333c013d9872c79 262 Gene3D G3DSA:3.40.50.300 1 239 5.9E-57 T 28-03-2018 AM348_RS15835 cd6547f13da5e7ed6333c013d9872c79 262 SMART SM00382 33 216 1.9E-17 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15835 cd6547f13da5e7ed6333c013d9872c79 262 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS07830 5ac1663d945e6f582cb6a8e1e1407f99 212 Gene3D G3DSA:3.40.30.10 1 88 2.7E-24 T 28-03-2018 AM348_RS07830 5ac1663d945e6f582cb6a8e1e1407f99 212 SUPERFAMILY SSF47616 82 208 2.42E-27 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS07830 5ac1663d945e6f582cb6a8e1e1407f99 212 SUPERFAMILY SSF52833 7 90 2.76E-23 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS07830 5ac1663d945e6f582cb6a8e1e1407f99 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 5.6E-20 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS07830 5ac1663d945e6f582cb6a8e1e1407f99 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 103 194 3.9E-12 T 28-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM348_RS07830 5ac1663d945e6f582cb6a8e1e1407f99 212 Gene3D G3DSA:1.20.1050.10 89 208 9.8E-17 T 28-03-2018 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 SMART SM00283 119 366 2.3E-82 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 SMART SM00304 66 118 8.9E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 SUPERFAMILY SSF58104 86 367 2.22E-69 T 28-03-2018 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 3.3E-6 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 308 337 3.3E-6 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 Gene3D G3DSA:1.10.287.950 174 370 1.3E-47 T 28-03-2018 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 Gene3D G3DSA:1.10.287.950 64 173 6.4E-17 T 28-03-2018 AM348_RS02590 5541f9c8018a6637eb8730a5057cdbab 370 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 179 332 3.4E-52 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS05865 ae0123d3e435e4004cb31d3a20bbe28d 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 1.2E-27 T 28-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS05865 ae0123d3e435e4004cb31d3a20bbe28d 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.225 T 28-03-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS05865 ae0123d3e435e4004cb31d3a20bbe28d 78 Gene3D G3DSA:2.30.170.40 2 75 1.5E-27 T 28-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05865 ae0123d3e435e4004cb31d3a20bbe28d 78 SUPERFAMILY SSF143800 1 77 1.57E-29 T 28-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05865 ae0123d3e435e4004cb31d3a20bbe28d 78 Pfam PF00830 Ribosomal L28 family 3 62 1.9E-25 T 28-03-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 2.0E-66 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 SUPERFAMILY SSF47928 3 104 3.01E-28 T 28-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 8.1E-29 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 8.1E-29 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 8.1E-29 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 8.1E-29 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 8.1E-29 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 28-03-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 Gene3D G3DSA:1.10.520.20 2 106 4.4E-28 T 28-03-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.689 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05270 fc6c48709df7aab4456f560e85d3a99a 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 2.8E-51 T 28-03-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS19685 93ea456574dd5586aa5413b937c9fb17 332 SUPERFAMILY SSF81345 11 331 5.36E-73 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS19685 93ea456574dd5586aa5413b937c9fb17 332 Pfam PF01032 FecCD transport family 18 330 4.5E-82 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS19685 93ea456574dd5586aa5413b937c9fb17 332 Gene3D G3DSA:1.10.3470.10 4 332 1.6E-56 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS14710 2dd9f9fb837eab06ac4f55e5e865093f 128 Pfam PF16931 Putative phage holin 1 123 2.1E-40 T 28-03-2018 IPR032637 Putative phage holin-like AM348_RS16780 4f8f015fa4921fe4d5732b6809a63409 144 Gene3D G3DSA:3.40.50.620 2 144 1.4E-31 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS16780 4f8f015fa4921fe4d5732b6809a63409 144 Pfam PF00582 Universal stress protein family 1 144 7.6E-30 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS16780 4f8f015fa4921fe4d5732b6809a63409 144 PRINTS PR01438 Universal stress protein signature 105 117 5.8E-10 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS16780 4f8f015fa4921fe4d5732b6809a63409 144 PRINTS PR01438 Universal stress protein signature 2 20 5.8E-10 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS16780 4f8f015fa4921fe4d5732b6809a63409 144 PRINTS PR01438 Universal stress protein signature 122 144 5.8E-10 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS16780 4f8f015fa4921fe4d5732b6809a63409 144 SUPERFAMILY SSF52402 3 144 1.17E-30 T 28-03-2018 AM348_RS21790 911a96e43b75eea18ef0237eaec3dcf2 240 Pfam PF06149 Protein of unknown function (DUF969) 8 224 2.6E-89 T 28-03-2018 IPR010374 Protein of unknown function DUF969 AM348_RS09270 fbc4a6ed0c6a01399964e374f681cb2e 165 Hamap MF_00746 Protein SprT [sprT]. 12 165 40.859 T 28-03-2018 IPR023483 Uncharacterised protein family SprT AM348_RS09270 fbc4a6ed0c6a01399964e374f681cb2e 165 Pfam PF17283 SprT-like zinc ribbon domain 125 163 1.8E-10 T 28-03-2018 IPR035240 SprT-like, zinc ribbon domain AM348_RS09270 fbc4a6ed0c6a01399964e374f681cb2e 165 Pfam PF10263 SprT-like family 20 118 7.4E-17 T 28-03-2018 IPR006640 SprT-like AM348_RS09270 fbc4a6ed0c6a01399964e374f681cb2e 165 SMART SM00731 16 165 1.1E-58 T 28-03-2018 IPR006640 SprT-like AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 SUPERFAMILY SSF50249 10 78 3.43E-26 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 Pfam PF00313 'Cold-shock' DNA-binding domain 15 78 2.3E-33 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 Gene3D G3DSA:2.40.50.140 9 79 5.6E-29 T 28-03-2018 AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 PRINTS PR00050 Cold shock protein signature 37 46 2.2E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 PRINTS PR00050 Cold shock protein signature 16 31 2.2E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 PRINTS PR00050 Cold shock protein signature 52 70 2.2E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 PIRSF PIRSF002599 10 79 3.7E-26 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 ProSitePatterns PS00352 'Cold-shock' domain signature. 27 46 - T 28-03-2018 IPR019844 Cold-shock conserved site AM348_RS22165 6875470649fbba76fc11fff5f64eea21 79 SMART SM00357 15 79 3.2E-33 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 2.7E-269 T 28-03-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 SUPERFAMILY SSF55021 336 423 4.81E-28 T 28-03-2018 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 Gene3D G3DSA:3.40.50.1100 37 148 1.2E-30 T 28-03-2018 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 28-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 Gene3D G3DSA:3.40.1020.10 338 513 2.5E-71 T 28-03-2018 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 5.9E-28 T 28-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 2.0E-28 T 28-03-2018 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 SUPERFAMILY SSF53686 14 365 2.36E-101 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 Gene3D G3DSA:3.40.50.1100 149 330 2.6E-45 T 28-03-2018 AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 29 316 8.5E-78 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS05095 da32f38d5a52978a5cac693bb567fabb 514 SUPERFAMILY SSF55021 420 512 1.44E-25 T 28-03-2018 AM348_RS14935 35be767921553577bc348b84e8da9629 167 Gene3D G3DSA:1.20.1260.10 4 162 3.7E-25 T 28-03-2018 IPR012347 Ferritin-related AM348_RS14935 35be767921553577bc348b84e8da9629 167 Pfam PF00210 Ferritin-like domain 9 142 9.8E-23 T 28-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM348_RS14935 35be767921553577bc348b84e8da9629 167 SUPERFAMILY SSF47240 6 158 8.84E-37 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS07920 f4bb7b90df2e098b3d5fa50aeec8924d 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 41.118 T 28-03-2018 IPR005337 RapZ-like family GO:0005524 AM348_RS07920 f4bb7b90df2e098b3d5fa50aeec8924d 284 SUPERFAMILY SSF52540 2 151 5.32E-13 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07920 f4bb7b90df2e098b3d5fa50aeec8924d 284 Pfam PF03668 P-loop ATPase protein family 1 282 4.0E-146 T 28-03-2018 IPR005337 RapZ-like family GO:0005524 AM348_RS07920 f4bb7b90df2e098b3d5fa50aeec8924d 284 Gene3D G3DSA:3.40.50.300 1 152 2.3E-11 T 28-03-2018 AM348_RS07920 f4bb7b90df2e098b3d5fa50aeec8924d 284 PIRSF PIRSF005052 1 284 3.8E-115 T 28-03-2018 IPR005337 RapZ-like family GO:0005524 AM348_RS12520 26e0cb3acf910c0e0e41cbc558258638 183 SUPERFAMILY SSF56300 1 163 8.49E-39 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS12520 26e0cb3acf910c0e0e41cbc558258638 183 Gene3D G3DSA:3.60.21.10 1 183 4.8E-28 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS12520 26e0cb3acf910c0e0e41cbc558258638 183 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 120 144 - T 28-03-2018 IPR020935 Phosphodiesterase YfcE, conserved site AM348_RS12520 26e0cb3acf910c0e0e41cbc558258638 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 161 6.8E-25 T 28-03-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 AM348_RS12520 26e0cb3acf910c0e0e41cbc558258638 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 168 1.7E-44 T 28-03-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 393 2.1E-95 T 28-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 Pfam PF00460 Flagella basal body rod protein 4 33 1.1E-11 T 28-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 28-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 Pfam PF07559 Flagellar basal body protein FlaE 172 292 6.7E-18 T 28-03-2018 IPR011491 Flagellar hook protein FlgE AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 Gene3D G3DSA:2.60.98.20 146 293 1.7E-27 T 28-03-2018 IPR011491 Flagellar hook protein FlgE AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 333 410 2.2E-20 T 28-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM348_RS19915 cb421160a53db950e0d18daa859e8069 411 SUPERFAMILY SSF117143 73 372 1.7E-79 T 28-03-2018 AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 Gene3D G3DSA:2.60.120.10 34 159 5.5E-15 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 Pfam PF13545 Crp-like helix-turn-helix domain 163 237 8.6E-15 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 188 204 2.1E-8 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 204 219 2.1E-8 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 Pfam PF00027 Cyclic nucleotide-binding domain 45 130 9.9E-10 T 28-03-2018 IPR000595 Cyclic nucleotide-binding domain AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 SUPERFAMILY SSF51206 44 154 8.38E-18 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 SUPERFAMILY SSF46785 161 237 1.65E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 Gene3D G3DSA:1.10.10.10 160 239 6.4E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00395 eb015807ac024f0f6b15927f31c60ff5 239 SMART SM00419 182 231 1.2E-8 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS17175 32e62f1268b77a390608d18c9265c77d 532 SUPERFAMILY SSF53850 27 523 4.52E-148 T 28-03-2018 AM348_RS17175 32e62f1268b77a390608d18c9265c77d 532 Gene3D G3DSA:3.40.190.10 202 297 8.4E-26 T 28-03-2018 AM348_RS17175 32e62f1268b77a390608d18c9265c77d 532 PIRSF PIRSF002741 2 532 1.3E-109 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS17175 32e62f1268b77a390608d18c9265c77d 532 Gene3D G3DSA:3.90.76.10 36 201 2.5E-34 T 28-03-2018 AM348_RS17175 32e62f1268b77a390608d18c9265c77d 532 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 451 6.3E-96 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS17175 32e62f1268b77a390608d18c9265c77d 532 Gene3D G3DSA:3.10.105.10 298 502 2.0E-63 T 28-03-2018 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 6.6E-300 T 28-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SUPERFAMILY SSF55681 467 690 2.48E-56 T 28-03-2018 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SUPERFAMILY SSF54991 696 794 7.98E-31 T 28-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:3.30.70.380 698 794 1.5E-23 T 28-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:2.40.50.140 54 140 8.4E-45 T 28-03-2018 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:3.30.56.10 1 53 2.8E-11 T 28-03-2018 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SMART SM00874 403 471 1.3E-31 T 28-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:3.30.56.10 141 184 1.1E-8 T 28-03-2018 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.5E-28 T 28-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:3.50.40.10 195 395 4.1E-74 T 28-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 1.7E-21 T 28-03-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SUPERFAMILY SSF50249 35 196 7.1E-52 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SMART SM00873 212 385 6.3E-101 T 28-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SUPERFAMILY SSF56037 195 394 4.97E-78 T 28-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:3.30.56.10 402 475 2.8E-26 T 28-03-2018 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Pfam PF03483 B3/4 domain 212 385 7.1E-72 T 28-03-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 49.477 T 28-03-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Pfam PF01588 Putative tRNA binding domain 45 145 1.5E-27 T 28-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SMART SM00896 701 794 9.7E-46 T 28-03-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 SUPERFAMILY SSF46955 403 475 4.85E-21 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS18855 b49a7c86263522a1dc2eedcebb24737e 795 Gene3D G3DSA:3.30.930.10 490 690 1.9E-38 T 28-03-2018 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 Gene3D G3DSA:3.90.1280.10 226 281 1.4E-24 T 28-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 Gene3D G3DSA:1.10.287.480 181 225 3.9E-20 T 28-03-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 SUPERFAMILY SSF118352 225 282 1.57E-19 T 28-03-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 SUPERFAMILY SSF64397 4 232 3.27E-76 T 28-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 PIRSF PIRSF005261 1 285 1.9E-71 T 28-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 Gene3D G3DSA:3.55.30.10 1 176 4.4E-62 T 28-03-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 284 33.781 T 28-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AM348_RS07025 4fa7630f92742326750e7eeaa0aac87a 292 Pfam PF01430 Hsp33 protein 5 272 2.4E-85 T 28-03-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 Pfam PF05552 Conserved TM helix 15 64 2.2E-14 T 28-03-2018 IPR008910 Conserved TM helix AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 28-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 Gene3D G3DSA:2.30.30.60 129 179 2.7E-15 T 28-03-2018 AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 Gene3D G3DSA:3.30.70.100 180 273 1.6E-30 T 28-03-2018 AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 SUPERFAMILY SSF82861 28 112 1.15E-17 T 28-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 SUPERFAMILY SSF82689 181 278 2.09E-33 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 SUPERFAMILY SSF50182 114 179 4.9E-17 T 28-03-2018 IPR010920 LSM domain AM348_RS09340 ed6ae3edb5da0ccc34840709f6dcb348 286 Pfam PF00924 Mechanosensitive ion channel 72 268 3.5E-59 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 SUPERFAMILY SSF51735 126 307 3.33E-44 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 SUPERFAMILY SSF50129 298 340 1.51E-5 T 28-03-2018 IPR011032 GroES-like AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 Pfam PF00107 Zinc-binding dehydrogenase 161 297 9.8E-19 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 Pfam PF16884 N-terminal domain of oxidoreductase 9 115 1.5E-41 T 28-03-2018 AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 Gene3D G3DSA:3.90.180.10 2 151 5.0E-32 T 28-03-2018 AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 SMART SM00829 21 339 4.4E-5 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 Gene3D G3DSA:3.40.50.720 152 282 8.5E-29 T 28-03-2018 AM348_RS17200 161cc54e52014b829ac0673306ff1680 344 SUPERFAMILY SSF50129 7 146 6.96E-44 T 28-03-2018 IPR011032 GroES-like AM348_RS07595 77522374eb6d21986ac912d257d05e0e 252 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS07595 77522374eb6d21986ac912d257d05e0e 252 PIRSF PIRSF039085 9 252 7.7E-108 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS07595 77522374eb6d21986ac912d257d05e0e 252 SUPERFAMILY SSF52540 12 246 8.24E-81 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07595 77522374eb6d21986ac912d257d05e0e 252 Pfam PF00005 ABC transporter 28 176 7.6E-38 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS07595 77522374eb6d21986ac912d257d05e0e 252 SMART SM00382 37 224 1.2E-16 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS07595 77522374eb6d21986ac912d257d05e0e 252 Gene3D G3DSA:3.40.50.300 9 251 3.4E-75 T 28-03-2018 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 Gene3D G3DSA:1.10.10.10 2 85 1.3E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 SUPERFAMILY SSF53850 91 296 1.36E-44 T 28-03-2018 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 7.6E-21 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 Gene3D G3DSA:3.40.190.10 93 178 1.3E-16 T 28-03-2018 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 Pfam PF03466 LysR substrate binding domain 89 291 8.4E-43 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 Gene3D G3DSA:3.40.190.10 179 262 5.6E-22 T 28-03-2018 AM348_RS00575 f2fe694838e616f123d0d02fde9649c2 304 SUPERFAMILY SSF46785 6 113 9.85E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 SUPERFAMILY SSF53067 5 256 1.38E-95 T 28-03-2018 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 Hamap MF_00186 Glycerol kinase [glpK]. 4 498 60.106 T 28-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 Gene3D G3DSA:3.30.420.40 1 249 7.5E-88 T 28-03-2018 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 451 1.9E-61 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 5 497 3.2E-230 T 28-03-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 253 5.9E-93 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 SUPERFAMILY SSF53067 256 497 2.16E-87 T 28-03-2018 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 PIRSF PIRSF000538 4 502 1.3E-177 T 28-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS04315 6aa48eeb0163feded46af87c9a92a868 502 Gene3D G3DSA:3.30.420.40 250 502 7.2E-80 T 28-03-2018 AM348_RS22630 dd533f0c99677b86efea2490b19046a6 267 Gene3D G3DSA:3.60.15.10 9 249 3.7E-20 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22630 dd533f0c99677b86efea2490b19046a6 267 SMART SM00849 25 186 0.003 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22630 dd533f0c99677b86efea2490b19046a6 267 SUPERFAMILY SSF56281 15 249 1.57E-32 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22630 dd533f0c99677b86efea2490b19046a6 267 Pfam PF00753 Metallo-beta-lactamase superfamily 25 84 1.5E-15 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 6.3E-124 T 28-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 Pfam PF04055 Radical SAM superfamily 50 201 2.7E-17 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 Gene3D G3DSA:3.20.20.70 4 315 7.8E-59 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 SMART SM00729 43 255 4.4E-41 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 SMART SM00876 220 312 5.9E-48 T 28-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 SUPERFAMILY SSF102114 6 313 3.27E-94 T 28-03-2018 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 PIRSF PIRSF001619 1 319 3.9E-139 T 28-03-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.642 T 28-03-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS21370 28115c569b8869c3f685b340a10be6e0 346 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 5.9E-20 T 28-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS10905 54e7c2cbff2f2469fcde32f7a0d9a6f1 115 Pfam PF06411 HdeA/HdeB family 17 101 3.1E-17 T 28-03-2018 IPR010486 HNS-dependent expression A/B AM348_RS10905 54e7c2cbff2f2469fcde32f7a0d9a6f1 115 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 17 109 9.0E-15 T 28-03-2018 AM348_RS10905 54e7c2cbff2f2469fcde32f7a0d9a6f1 115 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 10 109 25.312 T 28-03-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 AM348_RS10905 54e7c2cbff2f2469fcde32f7a0d9a6f1 115 Gene3D G3DSA:1.10.890.10 33 106 3.3E-18 T 28-03-2018 AM348_RS14480 a757be64f1207c9a825c4f60e18ef1d2 466 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 106 2.5E-22 T 28-03-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 AM348_RS14480 a757be64f1207c9a825c4f60e18ef1d2 466 Pfam PF07196 Flagellin hook IN motif 128 184 2.4E-8 T 28-03-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 AM348_RS14480 a757be64f1207c9a825c4f60e18ef1d2 466 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 222 451 1.6E-57 T 28-03-2018 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 Pfam PF02629 CoA binding domain 6 99 1.5E-31 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 SMART SM00881 4 100 3.3E-37 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.5E-39 T 28-03-2018 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.5E-39 T 28-03-2018 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.5E-39 T 28-03-2018 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.5E-39 T 28-03-2018 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 Gene3D G3DSA:3.40.50.720 1 119 9.9E-45 T 28-03-2018 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 Pfam PF00549 CoA-ligase 151 271 2.2E-20 T 28-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.358 T 28-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 28-03-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 SUPERFAMILY SSF52210 123 287 5.1E-57 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 8.3E-146 T 28-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 SUPERFAMILY SSF51735 1 122 1.55E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 Gene3D G3DSA:3.40.50.261 120 289 2.4E-56 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 28-03-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site AM348_RS21700 98eb55c1a38ef52ef01301f68b7b902e 289 PIRSF PIRSF001553 1 289 2.1E-134 T 28-03-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS18090 5a1f763f522e7f5814890c37df097eae 346 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 1.8E-25 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS18090 5a1f763f522e7f5814890c37df097eae 346 Gene3D G3DSA:3.40.50.720 1 134 9.7E-37 T 28-03-2018 AM348_RS18090 5a1f763f522e7f5814890c37df097eae 346 SUPERFAMILY SSF51735 2 191 8.86E-51 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18090 5a1f763f522e7f5814890c37df097eae 346 Gene3D G3DSA:3.30.360.10 135 346 1.2E-37 T 28-03-2018 AM348_RS18090 5a1f763f522e7f5814890c37df097eae 346 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 241 6.1E-18 T 28-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 SUPERFAMILY SSF55120 61 227 6.4E-48 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 SUPERFAMILY SSF55174 1 85 3.24E-13 T 28-03-2018 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 SMART SM00363 1 60 4.3E-13 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 Pfam PF00849 RNA pseudouridylate synthase 62 192 1.4E-18 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 Gene3D G3DSA:3.10.290.10 1 62 2.3E-13 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 28-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 Gene3D G3DSA:3.30.2350.10 63 233 6.1E-39 T 28-03-2018 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 1.5E-60 T 28-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS13000 0f9da74daac679fa465c54492176fca7 235 Pfam PF01479 S4 domain 1 45 1.4E-9 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS10470 2d7b7fa8b16e419a8eadff9579657e9e 120 SUPERFAMILY SSF141530 4 118 6.41E-35 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS10470 2d7b7fa8b16e419a8eadff9579657e9e 120 Gene3D G3DSA:2.40.33.40 3 118 1.6E-38 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS10470 2d7b7fa8b16e419a8eadff9579657e9e 120 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 6 118 2.0E-50 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS10470 2d7b7fa8b16e419a8eadff9579657e9e 120 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 113 2.0E-37 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS23070 79d0dae43d610375c32172a4ba4f0969 517 Pfam PF12792 CSS motif domain associated with EAL 39 243 6.1E-38 T 28-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM348_RS23070 79d0dae43d610375c32172a4ba4f0969 517 Gene3D G3DSA:3.20.20.450 267 517 7.1E-78 T 28-03-2018 IPR001633 EAL domain AM348_RS23070 79d0dae43d610375c32172a4ba4f0969 517 SMART SM00052 268 508 3.5E-104 T 28-03-2018 IPR001633 EAL domain AM348_RS23070 79d0dae43d610375c32172a4ba4f0969 517 SUPERFAMILY SSF141868 274 515 1.26E-71 T 28-03-2018 IPR001633 EAL domain AM348_RS23070 79d0dae43d610375c32172a4ba4f0969 517 Pfam PF00563 EAL domain 275 502 1.7E-63 T 28-03-2018 IPR001633 EAL domain AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 533 551 1.5E-35 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 595 609 1.5E-35 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 491 509 1.5E-35 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 562 580 1.5E-35 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 342 8.4E-13 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 734 0.0 T 28-03-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 7.9E-15 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 SMART SM00382 206 351 9.0E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 SMART SM00382 487 654 3.0E-6 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 302 314 - T 28-03-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Gene3D G3DSA:3.40.50.300 442 652 5.2E-41 T 28-03-2018 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 SUPERFAMILY SSF81923 1 141 1.96E-58 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 653 733 1.0E-24 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 SMART SM01086 653 744 1.5E-34 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Gene3D G3DSA:3.40.50.300 165 350 1.5E-28 T 28-03-2018 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Gene3D G3DSA:1.10.8.60 653 758 3.5E-25 T 28-03-2018 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 518 536 - T 28-03-2018 IPR028299 ClpA/B, conserved site 2 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 SUPERFAMILY SSF52540 169 426 8.84E-69 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 SUPERFAMILY SSF52540 437 747 1.69E-77 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Gene3D G3DSA:1.10.1780.10 1 143 1.6E-28 T 28-03-2018 IPR004176 Clp, N-terminal GO:0019538 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 486 647 8.6E-47 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS13590 341455dd2b9dfd4c2797cbe62cdd561f 758 Gene3D G3DSA:1.10.8.60 351 437 2.0E-27 T 28-03-2018 AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 237 29.263 T 28-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 Pfam PF01709 Transcriptional regulator 4 235 4.6E-76 T 28-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 2 235 1.1E-63 T 28-03-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 Gene3D G3DSA:1.10.10.200 2 76 7.3E-24 T 28-03-2018 IPR017856 Integrase, N-terminal zinc-binding domain-like AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 Hamap MF_00918 Probable transcriptional regulatory protein YeeN [yeeN]. 1 238 55.115 T 28-03-2018 IPR026562 Probable transcriptional regulatory protein YeeN AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 SUPERFAMILY SSF75625 2 235 8.76E-75 T 28-03-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 Gene3D G3DSA:3.30.70.980 80 175 4.6E-23 T 28-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS16385 a7eddc74f1e9d289eb63d4e147c35177 238 Gene3D G3DSA:3.30.70.980 181 237 2.6E-6 T 28-03-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS14475 682d923df14c2836b6d6c0487f6e5177 135 PIRSF PIRSF039090 1 135 1.2E-46 T 28-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM348_RS14475 682d923df14c2836b6d6c0487f6e5177 135 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 1.1E-44 T 28-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM348_RS14475 682d923df14c2836b6d6c0487f6e5177 135 SUPERFAMILY SSF101116 9 130 2.22E-41 T 28-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM348_RS14475 682d923df14c2836b6d6c0487f6e5177 135 Pfam PF02561 Flagellar protein FliS 8 125 4.8E-40 T 28-03-2018 IPR003713 Flagellar protein FliS GO:0044780 AM348_RS14475 682d923df14c2836b6d6c0487f6e5177 135 Gene3D G3DSA:1.20.120.340 2 129 4.3E-43 T 28-03-2018 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.901 T 28-03-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 Gene3D G3DSA:4.10.520.10 1 94 1.7E-31 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 1.4E-29 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.1E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.1E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.1E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 2.8E-53 T 28-03-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 SMART SM00411 1 91 1.3E-43 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 28-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM348_RS20745 f0ec3128ffa3f9f7685d9360d7f347c6 94 SUPERFAMILY SSF47729 1 91 8.68E-30 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS17970 804145c6a47a392680b1c051afd1a1a2 462 Gene3D G3DSA:3.40.50.1220 289 462 1.1E-91 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS17970 804145c6a47a392680b1c051afd1a1a2 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 2.6E-203 T 28-03-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 AM348_RS17970 804145c6a47a392680b1c051afd1a1a2 462 PIRSF PIRSF000204 1 462 6.9E-239 T 28-03-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 AM348_RS17970 804145c6a47a392680b1c051afd1a1a2 462 SUPERFAMILY SSF52467 289 462 1.84E-78 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 190 1.2E-86 T 28-03-2018 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 Gene3D G3DSA:3.30.70.20 127 147 3.0E-12 T 28-03-2018 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 SUPERFAMILY SSF54862 38 175 6.58E-29 T 28-03-2018 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 4 185 42.803 T 28-03-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 PIRSF PIRSF005784 3 191 9.6E-84 T 28-03-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 Gene3D G3DSA:3.30.70.20 24 126 1.3E-11 T 28-03-2018 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 Pfam PF04060 Putative Fe-S cluster 44 76 2.5E-12 T 28-03-2018 IPR007202 4Fe-4S domain GO:0051536 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 Gene3D G3DSA:3.30.70.20 148 180 8.4E-6 T 28-03-2018 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 Pfam PF14697 4Fe-4S dicluster domain 110 163 4.6E-17 T 28-03-2018 AM348_RS18115 7c0bfd54995611ddfdb5b831114d9a52 192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 SUPERFAMILY SSF51735 9 239 3.55E-38 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 238 1.8E-24 T 28-03-2018 AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 Gene3D G3DSA:3.40.50.720 8 240 5.5E-39 T 28-03-2018 AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.2E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.2E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 5.2E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17990 9ca2361747ec4e5928aaadafd243c503 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 5.2E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 34.743 T 28-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Gene3D G3DSA:3.40.1190.10 105 342 3.2E-53 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 425 4.2E-26 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 SUPERFAMILY SSF53244 339 491 1.98E-51 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Pfam PF01225 Mur ligase family, catalytic domain 25 102 5.4E-12 T 28-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Pfam PF08245 Mur ligase middle domain 114 318 3.0E-50 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 SUPERFAMILY SSF53623 105 338 1.57E-78 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 491 6.2E-165 T 28-03-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Gene3D G3DSA:3.90.190.20 343 494 2.6E-49 T 28-03-2018 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 SUPERFAMILY SSF63418 5 103 1.57E-22 T 28-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM348_RS01235 cfad99c11ec22045b11725fa22815728 495 Gene3D G3DSA:3.40.1390.10 2 104 1.4E-23 T 28-03-2018 AM348_RS13325 edd121aa158311365ca69706cfada2ce 305 Gene3D G3DSA:3.40.190.10 21 142 1.7E-21 T 28-03-2018 AM348_RS13325 edd121aa158311365ca69706cfada2ce 305 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 26 300 8.7E-60 T 28-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM348_RS13325 edd121aa158311365ca69706cfada2ce 305 Gene3D G3DSA:3.40.190.120 143 242 5.7E-25 T 28-03-2018 AM348_RS13325 edd121aa158311365ca69706cfada2ce 305 SUPERFAMILY SSF53850 26 303 5.97E-59 T 28-03-2018 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 601 618 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 2 618 34.922 T 28-03-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 33 - T 28-03-2018 IPR010916 TonB box, conserved site AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 Pfam PF00593 TonB dependent receptor 170 617 2.3E-41 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 Gene3D G3DSA:2.40.170.20 152 618 2.3E-68 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 Pfam PF07715 TonB-dependent Receptor Plug Domain 41 146 3.9E-28 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 2 618 2.6E-201 T 28-03-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 Gene3D G3DSA:2.170.130.10 19 151 2.9E-33 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS04085 d7b8a1addd6f45708b150e3f6b7acef1 618 SUPERFAMILY SSF56935 26 618 2.52E-114 T 28-03-2018 AM348_RS23455 1f8d2d3e1638411672007348bd2f64d1 841 Pfam PF00577 Outer membrane usher protein 202 749 7.8E-184 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23455 1f8d2d3e1638411672007348bd2f64d1 841 Pfam PF13953 PapC C-terminal domain 758 824 2.4E-18 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS23455 1f8d2d3e1638411672007348bd2f64d1 841 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 310 320 - T 28-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM348_RS23455 1f8d2d3e1638411672007348bd2f64d1 841 Pfam PF13954 PapC N-terminal domain 39 186 2.3E-32 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS23455 1f8d2d3e1638411672007348bd2f64d1 841 SUPERFAMILY SSF141729 64 178 3.92E-25 T 28-03-2018 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 Gene3D G3DSA:3.40.50.620 1 179 7.6E-50 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 Pfam PF06574 FAD synthetase 12 167 1.6E-57 T 28-03-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 Gene3D G3DSA:2.40.30.30 180 311 2.4E-39 T 28-03-2018 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 SUPERFAMILY SSF82114 174 307 2.62E-43 T 28-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 SUPERFAMILY SSF52374 15 175 6.48E-35 T 28-03-2018 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 Pfam PF01687 Riboflavin kinase 184 305 1.2E-36 T 28-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 SMART SM00904 183 307 1.5E-61 T 28-03-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 5.4E-119 T 28-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AM348_RS01580 a6e3e5fc069a4148728393c9f89e5182 312 PIRSF PIRSF004491 1 311 4.8E-103 T 28-03-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 Gene3D G3DSA:1.10.3370.10 12 439 1.5E-160 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 Pfam PF00344 SecY translocase 76 417 6.5E-120 T 28-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.964 T 28-03-2018 IPR026593 Protein translocase subunit SecY AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PIRSF PIRSF004557 11 441 4.3E-124 T 28-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 7.7E-99 T 28-03-2018 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 SUPERFAMILY SSF103491 16 424 3.53E-134 T 28-03-2018 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 28-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 1.5E-141 T 28-03-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS07440 94f7684647872b8ce2e068cf6725031c 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 28-03-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS18350 c0eebb0896fbe43e12ee31b5876ae9e7 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 114 8.1E-8 T 28-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM348_RS18350 c0eebb0896fbe43e12ee31b5876ae9e7 121 SUPERFAMILY SSF54593 2 120 7.05E-19 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS18350 c0eebb0896fbe43e12ee31b5876ae9e7 121 Gene3D G3DSA:3.10.180.10 1 121 1.4E-15 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS17755 13a5f4e59802800b943daf65a7f1ac94 265 Gene3D G3DSA:3.40.50.300 9 264 2.1E-59 T 28-03-2018 AM348_RS17755 13a5f4e59802800b943daf65a7f1ac94 265 SUPERFAMILY SSF52540 22 263 2.56E-56 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17755 13a5f4e59802800b943daf65a7f1ac94 265 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 242 264 8.5E-7 T 28-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM348_RS17755 13a5f4e59802800b943daf65a7f1ac94 265 Pfam PF00005 ABC transporter 40 194 8.0E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17755 13a5f4e59802800b943daf65a7f1ac94 265 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 24 265 5.1E-111 T 28-03-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD AM348_RS17755 13a5f4e59802800b943daf65a7f1ac94 265 SMART SM00382 49 242 0.0038 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13900 4b1f083fc5c959ac7959672297807e16 15 Pfam PF08047 Histidine operon leader peptide 1 15 6.0E-8 T 28-03-2018 IPR012565 Histidine operon leader peptide GO:0000105 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 Pfam PF01817 Chorismate mutase type II 9 86 8.1E-20 T 28-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 PIRSF PIRSF001499 1 373 2.1E-184 T 28-03-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 Gene3D G3DSA:1.20.59.10 3 83 5.4E-24 T 28-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 Gene3D G3DSA:1.10.3660.10 249 372 4.8E-33 T 28-03-2018 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 Pfam PF02153 Prephenate dehydrogenase 138 344 9.5E-31 T 28-03-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 SMART SM00830 9 89 9.3E-31 T 28-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 SUPERFAMILY SSF48600 4 88 3.3E-23 T 28-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 SUPERFAMILY SSF51735 91 238 1.26E-38 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 2.5E-45 T 28-03-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 Gene3D G3DSA:3.40.50.720 84 247 3.8E-26 T 28-03-2018 AM348_RS11115 97f67edaefc64e95af1f658a2af59616 373 SUPERFAMILY SSF48179 241 366 2.27E-42 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 Pfam PF03466 LysR substrate binding domain 93 296 2.6E-40 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 Gene3D G3DSA:3.40.190.10 180 265 6.6E-25 T 28-03-2018 AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 Gene3D G3DSA:1.10.10.10 5 84 1.3E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 SUPERFAMILY SSF46785 7 114 3.99E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 1.2E-14 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 SUPERFAMILY SSF53850 93 297 9.46E-41 T 28-03-2018 AM348_RS01550 5531bab5bc07d257381d7b8d54f921d5 302 Gene3D G3DSA:3.40.190.10 94 179 4.9E-14 T 28-03-2018 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 Pfam PF00005 ABC transporter 359 509 1.3E-35 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 Gene3D G3DSA:3.40.50.300 329 582 1.7E-78 T 28-03-2018 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 SUPERFAMILY SSF90123 8 325 4.84E-75 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 SUPERFAMILY SSF52540 332 580 3.34E-96 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 SMART SM00382 368 555 1.8E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 Gene3D G3DSA:1.20.1560.10 1 328 2.0E-66 T 28-03-2018 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 Pfam PF00664 ABC transporter transmembrane region 27 297 1.6E-60 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS20735 44a742a00adfe476e61d1231f1c89de4 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 2.3E-271 T 28-03-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 PIRSF PIRSF000460 5 816 8.0E-229 T 28-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 SUPERFAMILY SSF53756 8 814 0.0 T 28-03-2018 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 Gene3D G3DSA:3.40.50.2000 3 480 2.1E-189 T 28-03-2018 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 Gene3D G3DSA:3.40.50.2000 481 796 7.5E-139 T 28-03-2018 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 811 0.0 T 28-03-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 Pfam PF00343 Carbohydrate phosphorylase 102 811 0.0 T 28-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS21040 f6ec3390a3d39075eed246872d718589 816 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 655 667 - T 28-03-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Pfam PF03764 Elongation factor G, domain IV 486 609 9.1E-45 T 28-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SUPERFAMILY SSF54211 486 610 9.61E-40 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Pfam PF14492 Elongation Factor G, domain II 411 485 1.1E-33 T 28-03-2018 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 112.154 T 28-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 703 0.0 T 28-03-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Gene3D G3DSA:3.30.70.870 407 500 2.0E-36 T 28-03-2018 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SUPERFAMILY SSF54980 611 700 2.95E-27 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Gene3D G3DSA:3.30.230.10 501 624 4.0E-39 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 3.6E-67 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Gene3D G3DSA:3.40.50.300 1 293 2.2E-58 T 28-03-2018 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Gene3D G3DSA:2.40.30.10 295 406 7.5E-30 T 28-03-2018 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Pfam PF03144 Elongation factor Tu domain 2 331 398 4.9E-16 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SMART SM00889 487 609 9.2E-72 T 28-03-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SUPERFAMILY SSF50447 271 411 3.31E-35 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 187 4.8E-32 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SUPERFAMILY SSF52540 6 288 1.04E-106 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SMART SM00838 611 698 2.2E-50 T 28-03-2018 IPR000640 Elongation factor EFG, domain V-like AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Pfam PF00679 Elongation factor G C-terminus 611 696 8.1E-29 T 28-03-2018 IPR000640 Elongation factor EFG, domain V-like AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 SUPERFAMILY SSF54980 411 488 3.02E-25 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS07305 2442d24fbf5242decd38f7c659c32edb 704 Gene3D G3DSA:3.30.70.240 625 702 7.2E-29 T 28-03-2018 AM348_RS21200 c1fe36916e238c8610b2a8a433f51654 761 Gene3D G3DSA:2.170.130.10 33 182 8.1E-23 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS21200 c1fe36916e238c8610b2a8a433f51654 761 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 71 761 1.0E-76 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS21200 c1fe36916e238c8610b2a8a433f51654 761 Gene3D G3DSA:2.40.170.20 183 761 2.5E-83 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS21200 c1fe36916e238c8610b2a8a433f51654 761 SUPERFAMILY SSF56935 64 761 1.49E-121 T 28-03-2018 AM348_RS21200 c1fe36916e238c8610b2a8a433f51654 761 Pfam PF07715 TonB-dependent Receptor Plug Domain 70 169 2.7E-19 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS21200 c1fe36916e238c8610b2a8a433f51654 761 Pfam PF00593 TonB dependent receptor 263 759 1.4E-52 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 1.5E-29 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 1.5E-29 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 1.5E-29 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 1.5E-29 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 Gene3D G3DSA:3.40.50.620 1 190 6.7E-74 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 3.3E-117 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 1.5E-88 T 28-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 Gene3D G3DSA:1.10.240.10 191 313 2.5E-32 T 28-03-2018 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.393 T 28-03-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 AM348_RS07110 083e4651fc4dad1961ad8703d04ebbd4 334 SUPERFAMILY SSF52374 5 330 3.2E-98 T 28-03-2018 AM348_RS04865 28ced26a91ab41120a603dd38b8cc547 206 PIRSF PIRSF006324 1 206 1.6E-41 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS04865 28ced26a91ab41120a603dd38b8cc547 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 5.8E-70 T 28-03-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 AM348_RS04865 28ced26a91ab41120a603dd38b8cc547 206 Pfam PF01810 LysE type translocator 14 205 5.0E-57 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Gene3D G3DSA:3.30.1840.10 109 307 2.8E-51 T 28-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 679 1.4E-256 T 28-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Pfam PF02503 Polyphosphate kinase middle domain 119 319 9.5E-42 T 28-03-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Gene3D G3DSA:3.30.870.10 316 501 1.9E-26 T 28-03-2018 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 PIRSF PIRSF015589 1 687 3.2E-240 T 28-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Hamap MF_00347 Polyphosphate kinase [ppk]. 5 683 27.223 T 28-03-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Pfam PF13090 Polyphosphate kinase C-terminal domain 333 678 1.6E-143 T 28-03-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 SUPERFAMILY SSF143724 107 313 6.87E-59 T 28-03-2018 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 SUPERFAMILY SSF56024 320 499 2.13E-56 T 28-03-2018 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Gene3D G3DSA:3.30.870.10 502 688 9.2E-32 T 28-03-2018 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Gene3D G3DSA:1.20.58.310 9 108 3.5E-34 T 28-03-2018 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 3.1E-31 T 28-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 SUPERFAMILY SSF140356 3 105 6.67E-34 T 28-03-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 AM348_RS11665 b21fdb37629ee3958b7586c11e1f2c59 688 SUPERFAMILY SSF56024 503 684 1.84E-68 T 28-03-2018 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 Gene3D G3DSA:1.20.1090.10 160 363 9.2E-43 T 28-03-2018 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 1.3E-63 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 SUPERFAMILY SSF56796 3 356 2.49E-86 T 28-03-2018 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 PIRSF PIRSF000112 1 360 1.5E-96 T 28-03-2018 AM348_RS04190 b2422d8a3ba9af7c9071252f8744a2b0 367 Gene3D G3DSA:3.40.50.1970 3 159 4.7E-27 T 28-03-2018 AM348_RS17220 17ad59621b6b18513330c50b21b7b58c 480 Pfam PF00324 Amino acid permease 35 476 3.2E-128 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS17220 17ad59621b6b18513330c50b21b7b58c 480 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS17220 17ad59621b6b18513330c50b21b7b58c 480 PIRSF PIRSF006060 23 479 6.4E-65 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS18500 ebf2468dcde929581d08857d209f5bf5 475 SUPERFAMILY SSF53720 2 472 1.31E-148 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS18500 ebf2468dcde929581d08857d209f5bf5 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS18500 ebf2468dcde929581d08857d209f5bf5 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS18500 ebf2468dcde929581d08857d209f5bf5 475 Pfam PF00171 Aldehyde dehydrogenase family 13 469 7.3E-153 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS18500 ebf2468dcde929581d08857d209f5bf5 475 Gene3D G3DSA:3.40.605.10 1 264 1.7E-88 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS18500 ebf2468dcde929581d08857d209f5bf5 475 Gene3D G3DSA:3.40.309.10 265 455 3.5E-64 T 28-03-2018 AM348_RS13775 054c9420373b194762fba91385265900 406 Pfam PF13439 Glycosyltransferase Family 4 15 210 1.1E-6 T 28-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM348_RS13775 054c9420373b194762fba91385265900 406 TIGRFAM TIGR04005 wcaL: colanic acid biosynthesis glycosyltransferase WcaL 1 406 8.9E-245 T 28-03-2018 IPR023884 Colanic acid biosynthesis, glycosyl transferase, WcaL AM348_RS13775 054c9420373b194762fba91385265900 406 Gene3D G3DSA:3.40.50.2000 185 391 5.4E-44 T 28-03-2018 AM348_RS13775 054c9420373b194762fba91385265900 406 SUPERFAMILY SSF53756 14 76 2.33E-58 T 28-03-2018 AM348_RS13775 054c9420373b194762fba91385265900 406 SUPERFAMILY SSF53756 117 404 2.33E-58 T 28-03-2018 AM348_RS13775 054c9420373b194762fba91385265900 406 Pfam PF00534 Glycosyl transferases group 1 214 371 7.1E-41 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS17390 798d7cebb870bbabd08ff1f9e06d3aff 218 Pfam PF01292 Prokaryotic cytochrome b561 13 186 8.7E-20 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS17390 798d7cebb870bbabd08ff1f9e06d3aff 218 Gene3D G3DSA:1.20.950.20 1 217 1.8E-56 T 28-03-2018 AM348_RS17390 798d7cebb870bbabd08ff1f9e06d3aff 218 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 206 5.9E-71 T 28-03-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 AM348_RS17390 798d7cebb870bbabd08ff1f9e06d3aff 218 SUPERFAMILY SSF81342 3 212 1.18E-54 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS19495 8fcd3b02c48f3747712e92adcc907b5f 211 SUPERFAMILY SSF48498 92 206 3.81E-28 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS19495 8fcd3b02c48f3747712e92adcc907b5f 211 Gene3D G3DSA:1.10.357.10 73 204 1.1E-22 T 28-03-2018 AM348_RS19495 8fcd3b02c48f3747712e92adcc907b5f 211 SUPERFAMILY SSF46689 12 82 2.62E-17 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS19495 8fcd3b02c48f3747712e92adcc907b5f 211 Gene3D G3DSA:1.10.10.60 1 45 1.9E-11 T 28-03-2018 AM348_RS19495 8fcd3b02c48f3747712e92adcc907b5f 211 Gene3D G3DSA:1.10.260.40 46 72 4.2E-7 T 28-03-2018 AM348_RS19495 8fcd3b02c48f3747712e92adcc907b5f 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 6.2E-15 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 Gene3D G3DSA:1.10.8.10 1 84 3.0E-22 T 28-03-2018 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 SUPERFAMILY SSF53335 3 273 1.08E-62 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 Gene3D G3DSA:3.40.50.150 85 276 1.3E-45 T 28-03-2018 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 275 46.425 T 28-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 271 1.3E-90 T 28-03-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 180 186 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 275 5.0E-99 T 28-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AM348_RS15760 d346d85453003eb922bbec933cb554d3 277 Pfam PF13847 Methyltransferase domain 109 247 7.9E-24 T 28-03-2018 IPR025714 Methyltransferase domain AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 55.015 T 28-03-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 Pfam PF04542 Sigma-70 region 2 53 122 1.4E-16 T 28-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 SUPERFAMILY SSF88659 200 283 1.4E-18 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 Gene3D G3DSA:1.10.10.10 222 284 1.2E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 281 2.0E-34 T 28-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 PRINTS PR00046 Major sigma-70 factor signature 77 90 4.9E-19 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 PRINTS PR00046 Major sigma-70 factor signature 232 244 4.9E-19 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 4.9E-19 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 4.9E-19 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 PIRSF PIRSF000770 5 284 1.2E-32 T 28-03-2018 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 283 1.4E-129 T 28-03-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 Gene3D G3DSA:1.10.601.10 10 122 4.3E-32 T 28-03-2018 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 Pfam PF04545 Sigma-70, region 4 228 280 1.1E-16 T 28-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS06740 c92c60dc1fab6ce8f6a85d4b8601e234 284 SUPERFAMILY SSF88946 15 122 1.13E-37 T 28-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 SUPERFAMILY SSF56327 146 310 4.01E-42 T 28-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 SUPERFAMILY SSF51735 1 145 3.49E-39 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 3.6E-139 T 28-03-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 60.688 T 28-03-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 28-03-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 PIRSF PIRSF000102 1 309 5.2E-60 T 28-03-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 Gene3D G3DSA:3.90.110.10 148 311 3.1E-43 T 28-03-2018 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 4.0E-51 T 28-03-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 3.9E-46 T 28-03-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS07790 4e897c1140b59bc2e9a92c1f272ab132 311 Gene3D G3DSA:3.40.50.720 2 147 3.7E-40 T 28-03-2018 AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 Gene3D G3DSA:3.30.70.270 313 500 4.6E-4 T 28-03-2018 AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 SMART SM00052 492 735 1.3E-103 T 28-03-2018 IPR001633 EAL domain AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 Pfam PF05231 MASE1 15 320 1.0E-59 T 28-03-2018 IPR007895 MASE1 AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 Pfam PF00563 EAL domain 498 730 2.7E-67 T 28-03-2018 IPR001633 EAL domain AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 SUPERFAMILY SSF141868 497 738 3.01E-71 T 28-03-2018 IPR001633 EAL domain AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 SMART SM00267 319 480 1.8E-11 T 28-03-2018 IPR000160 GGDEF domain AM348_RS11655 cbcf3f5e57c165626dd8346fcf7e81fb 756 Gene3D G3DSA:3.20.20.450 501 743 2.4E-73 T 28-03-2018 IPR001633 EAL domain AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 SUPERFAMILY SSF48024 25 136 1.7E-38 T 28-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 Gene3D G3DSA:1.10.860.10 18 169 4.3E-47 T 28-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 27 464 1.9E-174 T 28-03-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 Pfam PF00772 DnaB-like helicase N terminal domain 27 128 6.5E-37 T 28-03-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 Pfam PF03796 DnaB-like helicase C terminal domain 206 462 2.5E-111 T 28-03-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 SUPERFAMILY SSF52540 204 275 4.5E-52 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 SUPERFAMILY SSF52540 302 456 4.5E-52 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 SMART SM00382 223 429 4.7E-4 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03540 d2b8350eaeda683782191084f3ad9855 471 Gene3D G3DSA:3.40.50.300 187 471 3.9E-64 T 28-03-2018 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 SUPERFAMILY SSF103473 18 402 1.26E-47 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 8.8E-5 T 28-03-2018 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 PRINTS PR01036 Tetracycline resistance protein TetB signature 166 190 8.8E-5 T 28-03-2018 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 8.8E-5 T 28-03-2018 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 PRINTS PR01036 Tetracycline resistance protein TetB signature 378 397 8.8E-5 T 28-03-2018 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 Gene3D G3DSA:1.20.1250.20 208 410 1.7E-12 T 28-03-2018 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 88 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 Pfam PF07690 Major Facilitator Superfamily 26 356 5.7E-32 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS02020 68f218799dd68d717b7f7ac789d83494 413 Gene3D G3DSA:1.20.1250.20 1 199 5.8E-28 T 28-03-2018 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 SUPERFAMILY SSF50465 298 393 3.17E-36 T 28-03-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.2E-17 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 2.9E-239 T 28-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 200 5.6E-58 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Gene3D G3DSA:3.40.50.300 2 74 5.6E-11 T 28-03-2018 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Gene3D G3DSA:3.40.50.300 75 203 9.6E-31 T 28-03-2018 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 7.9E-34 T 28-03-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Gene3D G3DSA:2.40.30.10 300 393 4.4E-33 T 28-03-2018 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.5E-14 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Gene3D G3DSA:2.40.30.10 206 299 9.6E-33 T 28-03-2018 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 SUPERFAMILY SSF52540 6 219 2.06E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.984 T 28-03-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS07310 91e6850f5ed910ca280a51ec5e84c3d2 394 SUPERFAMILY SSF50447 205 301 2.16E-30 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS15350 afc13e2ff2df76ebb451aebbc79fdd0b 269 Pfam PF13847 Methyltransferase domain 85 197 6.4E-15 T 28-03-2018 IPR025714 Methyltransferase domain AM348_RS15350 afc13e2ff2df76ebb451aebbc79fdd0b 269 Gene3D G3DSA:3.40.50.150 1 269 2.6E-60 T 28-03-2018 AM348_RS15350 afc13e2ff2df76ebb451aebbc79fdd0b 269 PIRSF PIRSF018249 1 268 1.0E-91 T 28-03-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 AM348_RS15350 afc13e2ff2df76ebb451aebbc79fdd0b 269 SUPERFAMILY SSF53335 4 250 2.28E-53 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 Pfam PF11967 Recombination protein O N terminal 4 76 1.2E-22 T 28-03-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 SUPERFAMILY SSF57863 86 165 8.11E-9 T 28-03-2018 AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 23.408 T 28-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 Pfam PF02565 Recombination protein O C terminal 83 226 2.6E-24 T 28-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 Gene3D G3DSA:2.40.50.140 1 76 5.8E-26 T 28-03-2018 AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 230 1.2E-38 T 28-03-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 AM348_RS11300 8dbeccdfd8e914faf42402b933e7375f 236 SUPERFAMILY SSF50249 4 75 2.23E-14 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 SUPERFAMILY SSF52518 6 175 2.81E-38 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 Gene3D G3DSA:3.40.50.920 181 311 1.5E-33 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 SUPERFAMILY SSF52922 176 311 4.71E-30 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 Gene3D G3DSA:3.40.50.970 2 180 1.3E-30 T 28-03-2018 AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 Pfam PF02780 Transketolase, C-terminal domain 181 303 3.1E-27 T 28-03-2018 IPR033248 Transketolase, C-terminal domain AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 Pfam PF02779 Transketolase, pyrimidine binding domain 14 168 6.6E-20 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS22415 100b0323bb6054dbe79f569ead5598bb 311 SMART SM00861 5 170 9.2E-29 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS18660 8f85050e02dd6a881c2df5728b201a18 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 8.6E-114 T 28-03-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 AM348_RS18660 8f85050e02dd6a881c2df5728b201a18 248 SMART SM00382 26 223 2.6E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS18660 8f85050e02dd6a881c2df5728b201a18 248 SUPERFAMILY SSF52540 2 231 2.34E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18660 8f85050e02dd6a881c2df5728b201a18 248 Gene3D G3DSA:3.40.50.300 1 248 1.4E-44 T 28-03-2018 AM348_RS18660 8f85050e02dd6a881c2df5728b201a18 248 Pfam PF00005 ABC transporter 17 172 1.3E-20 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS18660 8f85050e02dd6a881c2df5728b201a18 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS10805 2202606b4edebe5147fb5edd954c1705 463 Gene3D G3DSA:3.20.20.80 42 412 5.5E-9 T 28-03-2018 AM348_RS10805 2202606b4edebe5147fb5edd954c1705 463 SUPERFAMILY SSF51445 67 273 1.05E-12 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS10805 2202606b4edebe5147fb5edd954c1705 463 Pfam PF16116 Domain of unknown function (DUF4832) 288 446 8.9E-19 T 28-03-2018 IPR032267 Domain of unknown function DUF4832 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 Pfam PF01555 DNA methylase 26 300 2.0E-54 T 28-03-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 Gene3D G3DSA:3.40.50.150 4 315 2.3E-51 T 28-03-2018 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 261 279 5.2E-26 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 25 39 5.2E-26 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 242 259 5.2E-26 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 284 304 5.2E-26 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 57 77 5.2E-26 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS02205 00752f0789661d4f4501262672cc9401 315 SUPERFAMILY SSF53335 146 305 1.57E-47 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS02205 00752f0789661d4f4501262672cc9401 315 SUPERFAMILY SSF53335 6 80 1.57E-47 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.1E-63 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 Gene3D G3DSA:3.40.190.10 14 140 2.5E-36 T 28-03-2018 AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 253 5.2E-102 T 28-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 SMART SM00062 27 256 2.3E-72 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 Gene3D G3DSA:3.40.190.10 141 259 3.4E-17 T 28-03-2018 AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS12475 f953638f7807563db9f4ffcb1ad875ce 260 SUPERFAMILY SSF53850 1 257 2.77E-67 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PIRSF PIRSF002111 1 534 8.3E-221 T 28-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SUPERFAMILY SSF50249 429 535 2.29E-21 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 2.3E-99 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Gene3D G3DSA:2.40.50.140 1 92 8.2E-8 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 3.9E-241 T 28-03-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SUPERFAMILY SSF50249 1 112 8.99E-19 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Pfam PF00575 S1 RNA binding domain 103 171 6.9E-10 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-20 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Pfam PF00575 S1 RNA binding domain 449 520 7.4E-17 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Pfam PF00575 S1 RNA binding domain 20 78 7.8E-7 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Pfam PF00575 S1 RNA binding domain 361 434 2.4E-21 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Gene3D G3DSA:2.40.50.140 361 435 1.5E-20 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Gene3D G3DSA:2.40.50.140 274 348 2.5E-27 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Gene3D G3DSA:2.40.50.140 182 266 2.5E-26 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Gene3D G3DSA:2.40.50.140 96 177 2.4E-7 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 Gene3D G3DSA:2.40.50.140 451 550 2.8E-19 T 28-03-2018 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SUPERFAMILY SSF50249 189 277 3.88E-27 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SUPERFAMILY SSF50249 342 440 3.43E-22 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SUPERFAMILY SSF50249 255 363 7.86E-29 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SUPERFAMILY SSF50249 104 185 4.25E-14 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SMART SM00316 19 87 6.8E-5 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SMART SM00316 190 260 2.8E-28 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SMART SM00316 362 434 1.0E-20 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SMART SM00316 275 347 2.2E-27 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SMART SM00316 449 520 1.0E-20 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS20750 e9876b5e533d9ca67cdfedab6bf43a04 557 SMART SM00316 103 171 8.1E-9 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 SMART SM00382 27 214 2.8E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 1.4E-127 T 28-03-2018 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 SUPERFAMILY SSF52540 3 244 2.66E-85 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 Pfam PF12857 TOBE-like domain 289 339 1.8E-6 T 28-03-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 SUPERFAMILY SSF50331 239 345 3.15E-12 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 Pfam PF00005 ABC transporter 18 164 1.3E-37 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS11970 e920f03725edd8d0676df157b132a89e 365 Gene3D G3DSA:3.40.50.300 1 256 7.6E-77 T 28-03-2018 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 Pfam PF00854 POT family 89 447 6.3E-90 T 28-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 Gene3D G3DSA:1.20.1250.20 8 210 1.4E-24 T 28-03-2018 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 Gene3D G3DSA:1.20.1250.20 270 497 1.1E-15 T 28-03-2018 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 SUPERFAMILY SSF103473 15 212 2.88E-29 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 SUPERFAMILY SSF103473 251 488 2.88E-29 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 77 101 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 152 164 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 17 485 1.7E-137 T 28-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM348_RS18150 f3d88763325d3e64969924bc959cf5ae 501 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 489 49.375 T 28-03-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0015197|GO:0016020 AM348_RS20535 4abffa2e7501ab865fd043e80c9bc39a 169 SUPERFAMILY SSF52540 31 147 1.33E-28 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20535 4abffa2e7501ab865fd043e80c9bc39a 169 TIGRFAM TIGR00623 sula: cell division inhibitor SulA 2 169 1.7E-99 T 28-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM348_RS20535 4abffa2e7501ab865fd043e80c9bc39a 169 PIRSF PIRSF003093 1 169 2.6E-87 T 28-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM348_RS20535 4abffa2e7501ab865fd043e80c9bc39a 169 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 169 42.4 T 28-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM348_RS20535 4abffa2e7501ab865fd043e80c9bc39a 169 Pfam PF03846 Cell division inhibitor SulA 6 119 1.7E-55 T 28-03-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 AM348_RS20535 4abffa2e7501ab865fd043e80c9bc39a 169 Gene3D G3DSA:3.40.50.300 31 148 3.3E-17 T 28-03-2018 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 Gene3D G3DSA:1.10.260.40 10 62 4.0E-17 T 28-03-2018 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 Pfam PF13377 Periplasmic binding protein-like domain 177 337 3.9E-42 T 28-03-2018 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 SUPERFAMILY SSF47413 10 67 1.31E-13 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 Gene3D G3DSA:3.40.50.2300 63 183 1.4E-28 T 28-03-2018 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 SMART SM00354 9 79 2.7E-29 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 28-03-2018 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 SUPERFAMILY SSF53822 68 338 9.62E-91 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 56 1.7E-18 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS04270 09c244d4243ea0de14fa5c5ad7608a6c 341 Gene3D G3DSA:3.40.50.2300 184 320 8.4E-48 T 28-03-2018 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 Gene3D G3DSA:3.20.20.70 1 289 3.8E-66 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 PIRSF PIRSF009264 1 421 8.7E-191 T 28-03-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 Hamap MF_01296 D-tagatose-1,6-bisphosphate aldolase subunit GatZ [gatZ]. 1 420 71.365 T 28-03-2018 IPR023436 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ GO:0019402 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3 418 3.9E-205 T 28-03-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 Gene3D G3DSA:1.10.400.20 290 403 3.8E-44 T 28-03-2018 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 SUPERFAMILY SSF51569 2 418 3.66E-166 T 28-03-2018 AM348_RS08260 5d024602e65d7674b199d4e3185d9756 423 Pfam PF08013 Tagatose 6 phosphate kinase 2 418 6.6E-194 T 28-03-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 AM348_RS01730 48ac153f85b5d187445d75f00b6ab2d7 171 Gene3D G3DSA:3.90.950.10 1 170 2.0E-59 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS01730 48ac153f85b5d187445d75f00b6ab2d7 171 SUPERFAMILY SSF52972 1 167 3.58E-55 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS01730 48ac153f85b5d187445d75f00b6ab2d7 171 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 170 1.9E-66 T 28-03-2018 IPR002786 Non-canonical purine NTP phosphatase AM348_RS01730 48ac153f85b5d187445d75f00b6ab2d7 171 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 29.553 T 28-03-2018 IPR002786 Non-canonical purine NTP phosphatase AM348_RS01730 48ac153f85b5d187445d75f00b6ab2d7 171 Pfam PF01931 Protein of unknown function DUF84 7 165 2.2E-52 T 28-03-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 AM348_RS11845 a9ffa21e498d22500693d48f22741891 267 SUPERFAMILY SSF89028 93 249 6.47E-13 T 28-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS11845 a9ffa21e498d22500693d48f22741891 267 PIRSF PIRSF012294 1 255 7.2E-110 T 28-03-2018 IPR009194 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT-type GO:0005524|GO:0006580|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS11845 a9ffa21e498d22500693d48f22741891 267 Gene3D G3DSA:1.20.1200.10 94 255 1.9E-17 T 28-03-2018 AM348_RS11845 a9ffa21e498d22500693d48f22741891 267 Pfam PF01923 Cobalamin adenosyltransferase 95 246 3.2E-13 T 28-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 Gene3D G3DSA:2.40.30.20 1 89 5.2E-28 T 28-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 Pfam PF00677 Lumazine binding domain 100 185 2.0E-22 T 28-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 Pfam PF00677 Lumazine binding domain 3 87 2.8E-23 T 28-03-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 Gene3D G3DSA:2.40.30.20 94 192 2.8E-27 T 28-03-2018 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 SUPERFAMILY SSF63380 1 93 3.06E-27 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 SUPERFAMILY SSF63380 94 200 6.8E-32 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 PIRSF PIRSF000498 1 211 2.4E-76 T 28-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS18295 f5f99ad75519de5cf0684ae97707a04c 215 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 3.6E-89 T 28-03-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 Gene3D G3DSA:3.30.470.20 171 277 9.9E-36 T 28-03-2018 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 SUPERFAMILY SSF56059 98 288 2.19E-51 T 28-03-2018 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 Gene3D G3DSA:3.30.1490.20 115 170 1.5E-12 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 Gene3D G3DSA:3.40.50.20 1 114 1.8E-32 T 28-03-2018 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 Pfam PF08443 RimK-like ATP-grasp domain 97 286 2.4E-80 T 28-03-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 1.2E-96 T 28-03-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 AM348_RS20945 cea980e980f862277c9aed931af9a10c 300 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.873 T 28-03-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Gene3D G3DSA:1.20.120.330 812 946 1.6E-36 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Gene3D G3DSA:3.30.460.10 638 811 1.3E-60 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Gene3D G3DSA:3.30.460.10 111 284 1.0E-56 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 553 805 1.2E-102 T 28-03-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 31 274 1.6E-95 T 28-03-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 SUPERFAMILY SSF81593 815 943 2.04E-33 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 27 945 20.07 T 28-03-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Pfam PF08335 GlnD PII-uridylyltransferase 297 436 1.5E-44 T 28-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Pfam PF08335 GlnD PII-uridylyltransferase 825 916 8.1E-12 T 28-03-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Gene3D G3DSA:1.10.4050.10 1 110 5.5E-21 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Gene3D G3DSA:1.10.4050.10 529 637 9.9E-24 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 SUPERFAMILY SSF81301 525 811 6.21E-90 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 Gene3D G3DSA:1.20.120.330 285 440 5.5E-49 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 SUPERFAMILY SSF81593 287 436 5.73E-45 T 28-03-2018 AM348_RS08730 5cf465ab3c004ca4adfa17ebd514859c 946 SUPERFAMILY SSF81301 9 286 6.87E-89 T 28-03-2018 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 Gene3D G3DSA:1.20.272.10 223 343 7.9E-27 T 28-03-2018 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 Gene3D G3DSA:3.40.50.300 1 140 2.2E-19 T 28-03-2018 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 4.8E-107 T 28-03-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 SUPERFAMILY SSF52540 1 210 8.63E-55 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 Pfam PF06144 DNA polymerase III, delta subunit 21 190 4.0E-47 T 28-03-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 338 1.0E-72 T 28-03-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 Gene3D G3DSA:1.10.8.60 143 222 7.4E-23 T 28-03-2018 AM348_RS22085 10d755e3089f42d9bbfc686185029eb5 343 SUPERFAMILY SSF48019 212 335 6.29E-35 T 28-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 Pfam PF01676 Metalloenzyme superfamily 6 500 3.0E-83 T 28-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 512 50.077 T 28-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 Gene3D G3DSA:3.40.1450.10 79 297 3.2E-97 T 28-03-2018 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 SUPERFAMILY SSF64158 79 310 5.75E-86 T 28-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 PIRSF PIRSF001492 1 514 3.5E-207 T 28-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 86 299 1.4E-83 T 28-03-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 Gene3D G3DSA:3.20.20.370 1 51 0.23 T 28-03-2018 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 SUPERFAMILY SSF53649 5 79 3.27E-74 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 SUPERFAMILY SSF53649 315 510 3.27E-74 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 511 1.8E-245 T 28-03-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS05965 14bf14016b52a05929d600ba6c409fef 514 Gene3D G3DSA:3.40.720.10 298 509 1.6E-48 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 646 69.169 T 28-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 9.3E-26 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 9.3E-26 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 9.3E-26 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 9.3E-26 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 9.3E-26 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 646 7.9E-300 T 28-03-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 SUPERFAMILY SSF56712 1 607 2.22E-188 T 28-03-2018 IPR023405 DNA topoisomerase, type IA, core domain AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 SMART SM00493 1 124 6.4E-32 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 SMART SM00436 128 223 4.9E-37 T 28-03-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 SMART SM00437 280 558 1.7E-105 T 28-03-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Gene3D G3DSA:2.70.20.10 364 477 8.4E-23 T 28-03-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Gene3D G3DSA:1.10.460.10 157 357 2.3E-39 T 28-03-2018 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Gene3D G3DSA:1.10.460.10 478 646 3.3E-22 T 28-03-2018 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 28-03-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Pfam PF01751 Toprim domain 3 135 6.9E-18 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Pfam PF01131 DNA topoisomerase 158 593 1.5E-112 T 28-03-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 AM348_RS19100 466321358aad0e9325c9c7b7d3ded753 648 Gene3D G3DSA:3.40.50.140 1 156 2.5E-40 T 28-03-2018 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 SUPERFAMILY SSF51445 320 598 2.78E-83 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 SMART SM01038 727 998 2.9E-117 T 28-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Gene3D G3DSA:2.70.98.10 710 999 8.1E-80 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Gene3D G3DSA:2.60.40.10 209 318 2.2E-23 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Pfam PF00703 Glycosyl hydrolases family 2 209 318 1.1E-18 T 28-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Pfam PF16353 Domain of unknown function(DUF4981) 614 699 2.8E-15 T 28-03-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 SUPERFAMILY SSF49303 209 318 1.52E-24 T 28-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 SUPERFAMILY SSF49303 596 702 1.2E-20 T 28-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 320 603 8.9E-118 T 28-03-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 PRINTS PR00132 Glycosyl hydrolase family 2 signature 329 343 1.6E-32 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 PRINTS PR00132 Glycosyl hydrolase family 2 signature 435 450 1.6E-32 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 PRINTS PR00132 Glycosyl hydrolase family 2 signature 135 150 1.6E-32 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 PRINTS PR00132 Glycosyl hydrolase family 2 signature 360 378 1.6E-32 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 PRINTS PR00132 Glycosyl hydrolase family 2 signature 506 521 1.6E-32 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Pfam PF02929 Beta galactosidase small chain 730 997 3.9E-61 T 28-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Gene3D G3DSA:2.60.40.10 600 707 5.1E-21 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 SUPERFAMILY SSF74650 713 1000 1.3E-80 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 370 395 - T 28-03-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 SUPERFAMILY SSF49785 1 205 3.12E-62 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 42 204 3.1E-46 T 28-03-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Gene3D G3DSA:3.20.20.80 319 599 2.7E-63 T 28-03-2018 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 435 449 - T 28-03-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS08490 f530e3a6eca7b0e9912195b1f33cd514 1030 Gene3D G3DSA:2.60.120.260 1 206 1.3E-60 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.891 T 28-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 SUPERFAMILY SSF55681 5 318 8.23E-105 T 28-03-2018 AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 PIRSF PIRSF001549 2 423 5.4E-130 T 28-03-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 SUPERFAMILY SSF52954 329 423 1.57E-25 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 Gene3D G3DSA:3.30.930.10 2 325 9.4E-75 T 28-03-2018 AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 2.4E-156 T 28-03-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 5.3E-47 T 28-03-2018 AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 Pfam PF03129 Anticodon binding domain 339 420 2.3E-10 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS11590 fc5636dea8cacf0bf89c47f1ec149243 424 Gene3D G3DSA:3.40.50.800 328 424 7.4E-18 T 28-03-2018 IPR004154 Anticodon-binding AM348_RS02260 290285cff48caa5bc8078e0879ce40e2 87 Pfam PF01381 Helix-turn-helix 15 67 5.0E-14 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS02260 290285cff48caa5bc8078e0879ce40e2 87 Gene3D G3DSA:1.10.260.40 1 77 1.8E-20 T 28-03-2018 AM348_RS02260 290285cff48caa5bc8078e0879ce40e2 87 SUPERFAMILY SSF47413 8 75 5.36E-20 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS02260 290285cff48caa5bc8078e0879ce40e2 87 SMART SM00530 14 69 3.5E-15 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 SUPERFAMILY SSF46689 251 299 1.61E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 SMART SM00342 215 298 1.3E-26 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 Pfam PF12833 Helix-turn-helix domain 222 299 3.4E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 SUPERFAMILY SSF51182 43 112 4.14E-7 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 SUPERFAMILY SSF47454 137 194 3.4E-11 T 28-03-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain GO:0003677|GO:0006355 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 Gene3D G3DSA:1.10.10.60 259 309 3.1E-13 T 28-03-2018 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 252 294 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 298 1.9E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 282 1.9E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS03170 f6d64e032387a6b7ed8cb140ba032baf 310 Gene3D G3DSA:2.60.120.10 32 258 4.2E-20 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS13435 71e8e17c71d803cdfbc641f97a39054a 321 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 53 77 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS13435 71e8e17c71d803cdfbc641f97a39054a 321 Pfam PF00294 pfkB family carbohydrate kinase 19 305 1.6E-46 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS13435 71e8e17c71d803cdfbc641f97a39054a 321 Gene3D G3DSA:3.40.1190.20 15 320 1.0E-45 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS13435 71e8e17c71d803cdfbc641f97a39054a 321 SUPERFAMILY SSF53613 19 314 2.81E-51 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS13435 71e8e17c71d803cdfbc641f97a39054a 321 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 263 276 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS13030 7e6da6bda1aababd41da55f032f8e012 364 SUPERFAMILY SSF161098 131 346 5.36E-15 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13030 7e6da6bda1aababd41da55f032f8e012 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 152 359 2.1E-40 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13030 7e6da6bda1aababd41da55f032f8e012 364 Gene3D G3DSA:1.10.3720.10 2 349 2.6E-35 T 28-03-2018 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 Gene3D G3DSA:3.90.78.10 221 334 5.1E-43 T 28-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 SUPERFAMILY SSF56194 202 340 2.22E-53 T 28-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 Gene3D G3DSA:3.30.465.10 69 218 4.3E-47 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 SUPERFAMILY SSF56176 3 197 6.95E-47 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 Gene3D G3DSA:3.30.43.10 3 68 5.8E-19 T 28-03-2018 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 342 89.794 T 28-03-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 Pfam PF01565 FAD binding domain 20 149 9.8E-25 T 28-03-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 206 329 1.6E-34 T 28-03-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04050 5d0487101d50fbe0848d408f014cd86e 342 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 5 330 5.1E-120 T 28-03-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 Gene3D G3DSA:3.40.50.720 3 85 0.0017 T 28-03-2018 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 Gene3D G3DSA:3.30.9.10 182 320 1.0E-38 T 28-03-2018 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 Gene3D G3DSA:3.30.9.10 86 181 1.3E-16 T 28-03-2018 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.7E-28 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.7E-28 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.7E-28 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.7E-28 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.7E-28 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.7E-28 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 Pfam PF01266 FAD dependent oxidoreductase 5 323 5.0E-49 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 SUPERFAMILY SSF54373 226 319 6.08E-7 T 28-03-2018 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 491 5.1E-13 T 28-03-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 SUPERFAMILY SSF51905 312 375 7.92E-35 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 SUPERFAMILY SSF51905 1 260 7.92E-35 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06920 9dcaa4794777a144df6b1834833eae9e 502 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS13715 1ad5f02707a0e2f04e8d43360ef12d88 405 TIGRFAM TIGR04010 WcaD: putative colanic acid polymerase WcaD 1 404 4.0E-254 T 28-03-2018 IPR024013 Colanic acid biosynthesis, putative colanic acid polymerase, WcaD AM348_RS01525 735dbc8f6c35e120b1b3ab9c57800ab2 131 ProDom PD081346 TRANSCRIPTIONAL CAIF OPERON REGULATOR CAI ACTIVATOR TRANSCRIPTION ACTIVATORY FIX REGULATION 1 131 3.0E-69 T 28-03-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 AM348_RS01525 735dbc8f6c35e120b1b3ab9c57800ab2 131 Pfam PF07180 CaiF/GrlA transcriptional regulator 4 61 1.3E-6 T 28-03-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 AM348_RS17250 43afbfc7e6735f5a48725980b039e26b 169 SUPERFAMILY SSF55729 5 134 1.64E-20 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS17250 43afbfc7e6735f5a48725980b039e26b 169 Gene3D G3DSA:3.40.630.30 6 162 2.6E-21 T 28-03-2018 AM348_RS17250 43afbfc7e6735f5a48725980b039e26b 169 Pfam PF00583 Acetyltransferase (GNAT) family 33 132 1.3E-12 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 Gene3D G3DSA:1.10.286.10 7 85 5.8E-21 T 28-03-2018 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 40 220 2.9E-86 T 28-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 Gene3D G3DSA:3.30.1130.10 89 221 9.9E-47 T 28-03-2018 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 Pfam PF01227 GTP cyclohydrolase I 41 218 2.1E-63 T 28-03-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 SUPERFAMILY SSF55620 4 221 4.0E-77 T 28-03-2018 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 98 114 - T 28-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 146 156 - T 28-03-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM348_RS13195 cec7987987552057e8ebecf342cfd02d 222 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 36 219 33.906 T 28-03-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 AM348_RS09465 228407f2bcd4fa075c7dc0f90fe05923 242 Gene3D G3DSA:3.40.50.10490 70 241 8.2E-26 T 28-03-2018 AM348_RS09465 228407f2bcd4fa075c7dc0f90fe05923 242 SUPERFAMILY SSF46689 6 73 7.17E-20 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS09465 228407f2bcd4fa075c7dc0f90fe05923 242 Gene3D G3DSA:1.10.10.10 4 69 2.0E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09465 228407f2bcd4fa075c7dc0f90fe05923 242 Pfam PF01380 SIS domain 108 227 5.6E-14 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS09465 228407f2bcd4fa075c7dc0f90fe05923 242 SUPERFAMILY SSF53697 85 230 3.53E-31 T 28-03-2018 AM348_RS09465 228407f2bcd4fa075c7dc0f90fe05923 242 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 71 7.1E-14 T 28-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM348_RS22150 9307ec127dff507739697f7bc3081eb5 67 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 47 1.2E-20 T 28-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM348_RS22150 9307ec127dff507739697f7bc3081eb5 67 Pfam PF02416 mttA/Hcf106 family 4 54 7.3E-13 T 28-03-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AM348_RS22150 9307ec127dff507739697f7bc3081eb5 67 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 67 28.135 T 28-03-2018 IPR024905 Sec-independent protein translocase protein TatE AM348_RS22150 9307ec127dff507739697f7bc3081eb5 67 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 62 21.152 T 28-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 1.1E-7 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.1E-7 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.1E-7 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 56.491 T 28-03-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 SUPERFAMILY SSF52317 5 204 6.96E-60 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 2.6E-6 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 2.6E-6 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 2.6E-6 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Pfam PF00117 Glutamine amidotransferase class-I 12 199 7.1E-42 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 SUPERFAMILY SSF54810 405 525 1.7E-51 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Gene3D G3DSA:3.30.300.10 401 525 4.8E-53 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 212 525 1.2E-155 T 28-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Gene3D G3DSA:3.40.50.880 5 222 1.4E-49 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 6.1E-85 T 28-03-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 9.4E-7 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 9.4E-7 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 9.4E-7 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Pfam PF00958 GMP synthase C terminal domain 433 524 7.4E-44 T 28-03-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Pfam PF02540 NAD synthase 223 256 7.9E-7 T 28-03-2018 IPR022310 NAD/GMP synthase AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 SUPERFAMILY SSF52402 197 420 7.06E-59 T 28-03-2018 AM348_RS11640 ed1774cb4faa3d9522716637595593ec 525 Gene3D G3DSA:3.40.50.620 223 400 2.0E-35 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS06300 8da098c6ee533f646f839ee90af91f3a 339 Gene3D G3DSA:1.10.3720.10 3 325 8.6E-47 T 28-03-2018 AM348_RS06300 8da098c6ee533f646f839ee90af91f3a 339 SUPERFAMILY SSF161098 89 160 2.29E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06300 8da098c6ee533f646f839ee90af91f3a 339 SUPERFAMILY SSF161098 200 322 2.29E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06300 8da098c6ee533f646f839ee90af91f3a 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 9.0E-46 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 4.4E-41 T 28-03-2018 IPR025199 DNA translocase FtsK, 4TM region AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 Gene3D G3DSA:1.10.10.10 1289 1343 9.3E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 SUPERFAMILY SSF46785 1287 1351 7.35E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 Gene3D G3DSA:3.40.50.300 664 1224 3.6E-55 T 28-03-2018 AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 SMART SM00843 1287 1352 1.2E-41 T 28-03-2018 IPR018541 FtsK gamma domain AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 Pfam PF01580 FtsK/SpoIIIE family 973 1186 4.5E-75 T 28-03-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 SUPERFAMILY SSF52540 947 1259 1.09E-51 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20845 68a652f92a6ee2982e2b51ffab4e455d 1354 Pfam PF09397 Ftsk gamma domain 1289 1349 5.9E-28 T 28-03-2018 IPR018541 FtsK gamma domain AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 Pfam PF00664 ABC transporter transmembrane region 22 291 8.2E-39 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 SUPERFAMILY SSF52540 330 572 5.84E-81 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 SMART SM00382 361 547 5.9E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 Pfam PF00005 ABC transporter 352 500 3.5E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 Gene3D G3DSA:1.20.1560.10 1 325 2.4E-59 T 28-03-2018 AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 Gene3D G3DSA:3.40.50.300 326 577 4.1E-68 T 28-03-2018 AM348_RS23140 d17b3cd3ac933b4cc28444ff727b6341 590 SUPERFAMILY SSF90123 7 327 4.45E-72 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS21360 3c703a8bd6295b0f7369042d84e1dca1 251 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 12 250 5.6E-72 T 28-03-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 AM348_RS21360 3c703a8bd6295b0f7369042d84e1dca1 251 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 4 250 30.392 T 28-03-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 AM348_RS21360 3c703a8bd6295b0f7369042d84e1dca1 251 SUPERFAMILY SSF53335 10 243 5.05E-42 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS21360 3c703a8bd6295b0f7369042d84e1dca1 251 Gene3D G3DSA:3.40.50.150 2 226 6.0E-37 T 28-03-2018 AM348_RS21360 3c703a8bd6295b0f7369042d84e1dca1 251 Pfam PF08241 Methyltransferase domain 47 138 2.3E-24 T 28-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM348_RS20630 484bca22015a3f80c596aedb27b016b1 255 Gene3D G3DSA:3.40.50.300 10 220 6.8E-58 T 28-03-2018 AM348_RS20630 484bca22015a3f80c596aedb27b016b1 255 SMART SM00382 36 210 5.2E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20630 484bca22015a3f80c596aedb27b016b1 255 Pfam PF00005 ABC transporter 27 160 2.6E-29 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20630 484bca22015a3f80c596aedb27b016b1 255 SUPERFAMILY SSF52540 14 213 7.72E-64 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20630 484bca22015a3f80c596aedb27b016b1 255 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 SUPERFAMILY SSF46946 126 214 2.22E-17 T 28-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 104 7.5E-11 T 28-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 Hamap MF_01253 Endonuclease 8 [nei]. 1 263 60.473 T 28-03-2018 IPR023713 Endonuclease VIII GO:0003684|GO:0004519|GO:0006284|GO:0008270 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 205 2.5E-11 T 28-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 SUPERFAMILY SSF81624 2 127 1.05E-25 T 28-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 ProSitePatterns PS01242 Zinc finger FPG-type signature. 238 262 - T 28-03-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 SMART SM01232 126 211 6.2E-14 T 28-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 SMART SM00898 2 110 1.0E-13 T 28-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 SUPERFAMILY SSF57716 226 262 1.21E-10 T 28-03-2018 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 Pfam PF06827 Zinc finger found in FPG and IleRS 235 263 1.5E-6 T 28-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 Gene3D G3DSA:1.10.8.50 121 263 1.4E-34 T 28-03-2018 AM348_RS21775 db796d1cd6a148d01b285d574ee864aa 263 Gene3D G3DSA:3.20.190.10 2 120 6.0E-24 T 28-03-2018 AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 SMART SM00895 85 209 9.9E-15 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 SUPERFAMILY SSF48008 83 212 1.41E-24 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 3.0E-17 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 Pfam PF07729 FCD domain 89 208 2.0E-23 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 8.0E-5 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 8.0E-5 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 Gene3D G3DSA:1.20.120.530 72 228 4.0E-26 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 SUPERFAMILY SSF46785 7 100 9.83E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 SMART SM00345 17 75 2.6E-22 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS17805 0067c1197114b25969290f3bbf7aa883 228 Gene3D G3DSA:1.10.10.10 1 71 1.1E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12195 67ea74a4681d46c054bc2aafcb9d25f9 306 PIRSF PIRSF026649 3 305 3.5E-94 T 28-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM348_RS12195 67ea74a4681d46c054bc2aafcb9d25f9 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 296 7.1E-113 T 28-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM348_RS12195 67ea74a4681d46c054bc2aafcb9d25f9 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 305 69.785 T 28-03-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 KEGG: 00600+2.3.1.24 AM348_RS12195 67ea74a4681d46c054bc2aafcb9d25f9 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 305 49.573 T 28-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM348_RS12195 67ea74a4681d46c054bc2aafcb9d25f9 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 5 305 7.0E-140 T 28-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM348_RS10965 6c109770dc80e42674076a72dc3f7628 377 Gene3D G3DSA:3.40.50.720 1 141 4.1E-40 T 28-03-2018 AM348_RS10965 6c109770dc80e42674076a72dc3f7628 377 SUPERFAMILY SSF55347 135 308 5.56E-36 T 28-03-2018 AM348_RS10965 6c109770dc80e42674076a72dc3f7628 377 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 4.9E-24 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS10965 6c109770dc80e42674076a72dc3f7628 377 Gene3D G3DSA:3.30.360.10 142 374 7.3E-47 T 28-03-2018 AM348_RS10965 6c109770dc80e42674076a72dc3f7628 377 SUPERFAMILY SSF51735 4 158 1.97E-48 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS10965 6c109770dc80e42674076a72dc3f7628 377 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 207 1.5E-5 T 28-03-2018 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 3.9E-86 T 28-03-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Pfam PF04539 Sigma-70 region 3 97 167 1.4E-18 T 28-03-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 PIRSF PIRSF000770 1 238 2.5E-42 T 28-03-2018 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 SUPERFAMILY SSF88946 5 88 3.66E-23 T 28-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 SUPERFAMILY SSF88659 157 237 1.16E-19 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Gene3D G3DSA:1.10.10.10 145 239 7.4E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Gene3D G3DSA:1.10.1740.10 2 86 4.5E-22 T 28-03-2018 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 236 2.1E-33 T 28-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 SUPERFAMILY SSF88659 89 156 1.35E-16 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 63.166 T 28-03-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Pfam PF04545 Sigma-70, region 4 185 233 1.0E-16 T 28-03-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Gene3D G3DSA:1.10.10.10 89 137 7.4E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 PRINTS PR00046 Major sigma-70 factor signature 67 75 2.6E-13 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 PRINTS PR00046 Major sigma-70 factor signature 221 232 2.6E-13 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 PRINTS PR00046 Major sigma-70 factor signature 189 201 2.6E-13 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 PRINTS PR00046 Major sigma-70 factor signature 43 56 2.6E-13 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 PRINTS PR00046 Major sigma-70 factor signature 206 221 2.6E-13 T 28-03-2018 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS14495 bbd954085150aa3f5a05f6974ba3118b 239 Pfam PF04542 Sigma-70 region 2 16 88 1.7E-16 T 28-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 Gene3D G3DSA:2.60.40.10 27 143 3.6E-34 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 28-03-2018 IPR018046 Pili assembly chaperone, conserved site AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 SUPERFAMILY SSF49584 139 225 2.09E-21 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 222 1.6E-13 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 Gene3D G3DSA:2.60.40.10 147 230 9.1E-25 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 145 1.8E-39 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 PRINTS PR00969 Pili chaperone signature 27 36 6.4E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 PRINTS PR00969 Pili chaperone signature 162 177 6.4E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 PRINTS PR00969 Pili chaperone signature 72 93 6.4E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 PRINTS PR00969 Pili chaperone signature 127 142 6.4E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 PRINTS PR00969 Pili chaperone signature 100 117 6.4E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS22720 f0d5f469febff1eb8a087cf533397453 230 SUPERFAMILY SSF49354 22 145 1.1E-37 T 28-03-2018 IPR008962 PapD-like AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 SUPERFAMILY SSF56214 3 125 1.23E-29 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 5.2E-40 T 28-03-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 87 1.0E-39 T 28-03-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 121 3.9E-24 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.701 T 28-03-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 3.7E-60 T 28-03-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 AM348_RS11310 bfd2ed69e0ed8375a30a7e2ea80c87f7 126 Gene3D G3DSA:3.90.470.20 1 126 8.1E-37 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 SUPERFAMILY SSF63520 191 294 2.62E-18 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Gene3D G3DSA:1.10.10.10 1 68 7.3E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Gene3D G3DSA:1.10.10.10 90 158 7.7E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Pfam PF05043 Mga helix-turn-helix domain 92 169 4.4E-7 T 28-03-2018 IPR007737 Mga helix-turn-helix domain AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Pfam PF08279 HTH domain 7 64 2.2E-9 T 28-03-2018 IPR013196 Helix-turn-helix, type 11 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Gene3D G3DSA:1.10.1790.10 310 417 7.2E-22 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Gene3D G3DSA:3.40.50.2300 418 507 8.8E-18 T 28-03-2018 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 SUPERFAMILY SSF63520 314 417 8.89E-17 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 SUPERFAMILY SSF52794 421 504 1.67E-11 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 SUPERFAMILY SSF46785 2 47 2.38E-6 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Pfam PF00874 PRD domain 209 294 7.6E-11 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Pfam PF00874 PRD domain 324 413 2.6E-15 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS05735 47b0643be1211dac9326da5dc5bcfcf7 517 Gene3D G3DSA:1.10.1790.10 199 298 4.7E-18 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS21640 c1b763f8d2b994be0010f7cb5c7e8cd1 200 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 29 200 1.5E-72 T 28-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS21640 c1b763f8d2b994be0010f7cb5c7e8cd1 200 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 7 25 1.1E-5 T 28-03-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS21640 c1b763f8d2b994be0010f7cb5c7e8cd1 200 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 32 200 1.4E-60 T 28-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS21640 c1b763f8d2b994be0010f7cb5c7e8cd1 200 PIRSF PIRSF015617 5 200 1.6E-66 T 28-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS21640 c1b763f8d2b994be0010f7cb5c7e8cd1 200 SUPERFAMILY SSF52540 11 200 4.96E-73 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21640 c1b763f8d2b994be0010f7cb5c7e8cd1 200 Gene3D G3DSA:3.40.50.300 10 200 4.4E-71 T 28-03-2018 AM348_RS17940 e11e454653c01d28877cf3869c455bb5 109 SUPERFAMILY SSF103481 12 108 4.97E-17 T 28-03-2018 AM348_RS17940 e11e454653c01d28877cf3869c455bb5 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 33.7 T 28-03-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 AM348_RS17940 e11e454653c01d28877cf3869c455bb5 109 Pfam PF00893 Small Multidrug Resistance protein 5 99 1.1E-28 T 28-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 Pfam PF01204 Trehalase 70 546 2.1E-165 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 452 468 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 314 331 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 530 543 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 346 363 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 389 405 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 207 225 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 281 298 8.1E-46 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 Hamap MF_01059 Cytoplasmic trehalase [treF]. 34 549 80.339 T 28-03-2018 IPR023715 Trehalase, cytoplasmic GO:0004555|GO:0005737|GO:0005993|GO:0071474 KEGG: 00500+3.2.1.28 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 ProSitePatterns PS00928 Trehalase signature 2. 459 468 - T 28-03-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 ProSitePatterns PS00927 Trehalase signature 1. 165 178 - T 28-03-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 SUPERFAMILY SSF48208 55 547 3.49E-150 T 28-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM348_RS06420 a1650aabf35cae077ff97dfefffb5f99 549 Gene3D G3DSA:1.50.10.10 56 549 6.8E-137 T 28-03-2018 AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 5.8E-133 T 28-03-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.12+1.1.1.127|MetaCyc: PWY-5515|MetaCyc: PWY-6507|MetaCyc: PWY-7562 AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 8.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 8.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 8.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 8.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 8.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 8.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.4E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.4E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.4E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 Gene3D G3DSA:3.40.50.720 2 251 1.5E-70 T 28-03-2018 AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 SUPERFAMILY SSF51735 6 252 3.02E-80 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18920 f9ac6f5bc37638349d10d318c565927f 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 250 3.3E-60 T 28-03-2018 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 Pfam PF00816 H-NS histone family 32 125 3.3E-20 T 28-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 PIRSF PIRSF002096 1 132 5.9E-52 T 28-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 Gene3D G3DSA:1.10.287.1050 1 57 1.4E-23 T 28-03-2018 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 SUPERFAMILY SSF81273 90 132 2.79E-11 T 28-03-2018 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 SUPERFAMILY SSF81273 5 58 1.29E-16 T 28-03-2018 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 SMART SM00528 85 132 7.0E-22 T 28-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM348_RS20340 590e7f8e0351c462877b90c89808a886 132 Gene3D G3DSA:4.10.430.10 91 132 8.4E-18 T 28-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM348_RS08765 4c5b679320cbcb6ac1b5f64cb9da8181 598 Pfam PF05935 Arylsulfotransferase (ASST) 146 587 2.2E-137 T 28-03-2018 IPR010262 Arylsulfotransferase, C-terminal AM348_RS08765 4c5b679320cbcb6ac1b5f64cb9da8181 598 Pfam PF17425 Arylsulfotransferase Ig-like domain 42 127 1.5E-25 T 28-03-2018 IPR035391 Arylsulfotransferase, Ig-like domain AM348_RS08765 4c5b679320cbcb6ac1b5f64cb9da8181 598 Hamap MF_00933 Arylsulfate sulfotransferase AssT [assT]. 1 598 91.712 T 28-03-2018 IPR028610 Arylsulfate sulfotransferase AssT, Enterobacteria GO:0004062 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Gene3D G3DSA:2.40.30.10 188 287 4.6E-26 T 28-03-2018 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 SUPERFAMILY SSF52540 2 235 1.51E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 SUPERFAMILY SSF54980 292 370 1.73E-18 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 1.0E-52 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 28-03-2018 IPR031157 Tr-type G domain, conserved site AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 2.0E-11 T 28-03-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Gene3D G3DSA:3.40.50.300 1 185 2.2E-36 T 28-03-2018 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Gene3D G3DSA:3.30.70.870 288 367 1.2E-27 T 28-03-2018 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Gene3D G3DSA:3.30.70.240 390 549 4.1E-25 T 28-03-2018 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 SUPERFAMILY SSF54980 399 493 5.28E-24 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 172 1.8E-16 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.4E-49 T 28-03-2018 IPR013842 GTP-binding protein LepA, C-terminal AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Pfam PF00679 Elongation factor G C-terminus 399 482 2.4E-19 T 28-03-2018 IPR000640 Elongation factor EFG, domain V-like AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 307.355 T 28-03-2018 IPR006297 Elongation factor 4 GO:0005525 AM348_RS11275 7ae446fac17d8004879b1a8f15783fb7 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 1.4E-301 T 28-03-2018 IPR006297 Elongation factor 4 GO:0005525 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 Pfam PF05681 Fumarate hydratase (Fumerase) 50 325 1.3E-80 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 372 535 2.7E-53 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 Gene3D G3DSA:3.20.130.10 358 535 1.2E-60 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 78 324 6.9E-30 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 SUPERFAMILY SSF117457 361 534 6.8E-56 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 ProSitePatterns PS00163 Fumarate lyases signature. 455 464 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 Pfam PF05683 Fumarase C-terminus 331 536 4.9E-83 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS21635 ebfafaa2fe826518b70db841083bfdf8 550 PIRSF PIRSF001394 29 550 1.8E-219 T 28-03-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 Gene3D G3DSA:3.40.50.880 286 543 3.3E-76 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.457 T 28-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 SUPERFAMILY SSF52540 3 269 1.82E-122 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 6.4E-267 T 28-03-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 1.4E-64 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 Gene3D G3DSA:3.40.50.300 1 285 2.2E-129 T 28-03-2018 AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 SUPERFAMILY SSF52317 289 542 1.22E-88 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS10010 5b27198a47ad760f7dfcd66471d492cc 545 Pfam PF06418 CTP synthase N-terminus 5 266 3.5E-126 T 28-03-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 AM348_RS19205 063e49bcc314dc95ad02ecabb2d71a2a 256 Gene3D G3DSA:3.40.50.150 17 203 1.4E-32 T 28-03-2018 AM348_RS19205 063e49bcc314dc95ad02ecabb2d71a2a 256 Pfam PF13649 Methyltransferase domain 43 140 8.9E-20 T 28-03-2018 AM348_RS19205 063e49bcc314dc95ad02ecabb2d71a2a 256 SUPERFAMILY SSF53335 16 242 1.52E-40 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Gene3D G3DSA:3.30.2090.10 723 811 2.6E-17 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Gene3D G3DSA:3.30.70.1430 38 140 1.9E-30 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82866 296 497 6.93E-47 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82693 566 670 7.85E-34 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1035 0.0 T 28-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Gene3D G3DSA:1.20.1640.10 828 1032 8.3E-38 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82693 135 182 2.14E-27 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82693 274 330 2.14E-27 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Gene3D G3DSA:3.30.70.1430 568 669 4.8E-22 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82693 810 858 4.24E-25 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82693 673 723 4.24E-25 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.9E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82714 182 271 3.92E-19 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82693 38 132 6.8E-28 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82714 725 810 2.09E-22 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 SUPERFAMILY SSF82866 840 1029 3.92E-43 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Gene3D G3DSA:1.20.1640.10 287 510 3.6E-44 T 28-03-2018 AM348_RS07620 7ec8a267ce1331f89f7274293f57c836 1037 Gene3D G3DSA:3.30.2090.10 180 275 4.2E-15 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 3.6E-219 T 28-03-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 SUPERFAMILY SSF54368 3 99 4.58E-36 T 28-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 SMART SM01230 102 379 1.4E-151 T 28-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 1.2E-138 T 28-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 Gene3D G3DSA:3.10.20.70 2 104 3.3E-28 T 28-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 SUPERFAMILY SSF55931 102 468 3.24E-138 T 28-03-2018 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 28-03-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 28-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 Gene3D G3DSA:3.30.590.10 105 457 1.8E-123 T 28-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 9.7E-32 T 28-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS04625 35de8263cf92ca1a1e2f0490de6a3423 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 28-03-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS22210 2b5b39066dcb2d43a3d35f1303a7a8ba 184 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 13 176 3.2E-53 T 28-03-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 AM348_RS22210 2b5b39066dcb2d43a3d35f1303a7a8ba 184 Hamap MF_00398 Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase [citX]. 4 181 35.819 T 28-03-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 AM348_RS22210 2b5b39066dcb2d43a3d35f1303a7a8ba 184 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 13 176 9.4E-59 T 28-03-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 Gene3D G3DSA:3.30.465.10 201 285 3.7E-27 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 Pfam PF00571 CBS domain 69 124 6.6E-8 T 28-03-2018 IPR000644 CBS domain AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 Pfam PF00571 CBS domain 141 189 5.9E-5 T 28-03-2018 IPR000644 CBS domain AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 SUPERFAMILY SSF54631 66 202 2.53E-32 T 28-03-2018 AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 Gene3D G3DSA:3.10.580.10 50 200 5.8E-35 T 28-03-2018 AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 Pfam PF03471 Transporter associated domain 206 281 2.6E-23 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 SMART SM00116 78 127 4.2 T 28-03-2018 IPR000644 CBS domain AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 SMART SM00116 141 189 1.6 T 28-03-2018 IPR000644 CBS domain AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 SUPERFAMILY SSF56176 204 289 1.66E-24 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS22035 2f5c97a92d90b50440bfe4d8f1243086 292 SMART SM01091 205 283 4.5E-32 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 SUPERFAMILY SSF116878 379 454 5.62E-51 T 28-03-2018 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 SUPERFAMILY SSF116878 121 220 5.62E-51 T 28-03-2018 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.22 T 28-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 7.6E-100 T 28-03-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 6.5E-34 T 28-03-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 370 1.5E-22 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Gene3D G3DSA:1.20.120.430 122 279 6.7E-27 T 28-03-2018 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Pfam PF01926 50S ribosome-binding GTPase 218 336 1.0E-24 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Gene3D G3DSA:1.20.120.430 280 454 6.2E-35 T 28-03-2018 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Pfam PF12631 MnmE helical domain 123 451 9.1E-61 T 28-03-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 Gene3D G3DSA:3.30.1360.120 1 121 2.0E-40 T 28-03-2018 AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 SUPERFAMILY SSF52540 72 152 2.44E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05360 74fefdc4aa9d9340f7891e37fcabe149 454 SUPERFAMILY SSF52540 188 372 2.44E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 1.7E-19 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 Gene3D G3DSA:1.10.10.10 120 223 1.7E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 Gene3D G3DSA:3.40.50.2300 1 119 1.8E-33 T 28-03-2018 AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 SMART SM00448 1 112 1.1E-38 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 SUPERFAMILY SSF52172 1 173 7.4E-38 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 SMART SM00862 145 220 4.5E-20 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS19400 b633116db525223ad4f4b4766a9d4851 223 Pfam PF00072 Response regulator receiver domain 3 112 1.9E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS11890 8d9c1631a5ed3ce7c3a0e70dd29e11a1 453 PIRSF PIRSF018788 1 453 1.6E-233 T 28-03-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM348_RS11890 8d9c1631a5ed3ce7c3a0e70dd29e11a1 453 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 444 2.8E-202 T 28-03-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM348_RS11890 8d9c1631a5ed3ce7c3a0e70dd29e11a1 453 Gene3D G3DSA:3.20.20.70 143 449 2.5E-153 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11890 8d9c1631a5ed3ce7c3a0e70dd29e11a1 453 Gene3D G3DSA:1.10.220.70 56 140 1.1E-29 T 28-03-2018 AM348_RS11890 8d9c1631a5ed3ce7c3a0e70dd29e11a1 453 Gene3D G3DSA:2.30.170.30 1 53 2.5E-26 T 28-03-2018 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 Gene3D G3DSA:3.40.50.10860 40 175 8.8E-52 T 28-03-2018 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 SMART SM00839 190 420 1.0E-91 T 28-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 107 120 - T 28-03-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 188 420 1.8E-73 T 28-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 348 359 3.7E-32 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 99 113 3.7E-32 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 179 201 3.7E-32 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 221 241 3.7E-32 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 SUPERFAMILY SSF51735 188 423 3.12E-73 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 PIRSF PIRSF000185 10 423 2.8E-158 T 28-03-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 42 170 3.0E-54 T 28-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 SUPERFAMILY SSF53223 11 190 1.34E-67 T 28-03-2018 AM348_RS15625 062b415f92c70616d6ed239abefd8315 424 Gene3D G3DSA:3.40.50.720 188 423 1.4E-73 T 28-03-2018 AM348_RS16650 aad15c49f6bfa0f3175d900430932886 168 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 28-03-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 AM348_RS16650 aad15c49f6bfa0f3175d900430932886 168 Pfam PF08534 Redoxin 20 163 9.4E-30 T 28-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM348_RS16650 aad15c49f6bfa0f3175d900430932886 168 SUPERFAMILY SSF52833 4 164 6.41E-45 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS16650 aad15c49f6bfa0f3175d900430932886 168 Gene3D G3DSA:3.40.30.10 9 168 6.0E-24 T 28-03-2018 AM348_RS16650 aad15c49f6bfa0f3175d900430932886 168 Hamap MF_00269 Probable thiol peroxidase [tpx]. 4 167 39.293 T 28-03-2018 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 4.7E-117 T 28-03-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 504 4.5E-12 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 SUPERFAMILY SSF56645 117 355 7.33E-45 T 28-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 147 232 9.3E-16 T 28-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 SUPERFAMILY SSF47203 360 515 4.51E-21 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Gene3D G3DSA:1.20.140.10 353 508 7.1E-19 T 28-03-2018 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 237 328 3.3E-9 T 28-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Gene3D G3DSA:2.40.110.10 236 352 4.7E-17 T 28-03-2018 AM348_RS00460 1ff25bc441a81175137761be6a73cf7f 814 Gene3D G3DSA:1.10.540.10 76 235 2.0E-29 T 28-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 SUPERFAMILY SSF55961 160 442 2.35E-62 T 28-03-2018 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 163 433 4.8E-46 T 28-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 Gene3D G3DSA:3.90.380.10 149 453 1.2E-70 T 28-03-2018 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 85 108 - T 28-03-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 27 52 2.2E-60 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 184 206 2.2E-60 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 57 72 2.2E-60 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 143 169 2.2E-60 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 99 119 2.2E-60 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 78 98 2.2E-60 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 Pfam PF00355 Rieske [2Fe-2S] domain 43 125 5.5E-22 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 Gene3D G3DSA:2.102.10.10 40 148 2.5E-21 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 SUPERFAMILY SSF50022 3 157 1.83E-50 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS11405 d9cac85700432b0e8d0291af6a3134e9 453 Hamap MF_01648 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha [hcaE]. 1 453 99.532 T 28-03-2018 IPR020875 3-phenylpropionate/cinnamic acid dioxygenase, alpha subunit GO:0005506|GO:0008695|GO:0019439|GO:0055114 KEGG: 00360+1.14.12.19|MetaCyc: PWY-6690 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 1.8E-239 T 28-03-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 Gene3D G3DSA:3.40.605.10 7 272 7.0E-107 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 Pfam PF00171 Aldehyde dehydrogenase family 19 477 6.7E-176 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 Gene3D G3DSA:3.40.309.10 273 464 5.9E-73 T 28-03-2018 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 SUPERFAMILY SSF53720 6 481 1.02E-176 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS10705 19b7adb32c0b49270b2deb5fdb5a07c8 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 Pfam PF01238 Phosphomannose isomerase type I 1 356 1.8E-112 T 28-03-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 SUPERFAMILY SSF51182 1 375 6.76E-100 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 3 384 4.1E-131 T 28-03-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 28-03-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 2.2E-73 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 Gene3D G3DSA:2.60.120.10 1 294 7.7E-77 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 PIRSF PIRSF001480 1 391 8.2E-109 T 28-03-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 Gene3D G3DSA:2.60.120.10 295 391 2.6E-20 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS18050 c01a52b82849b44af95656fbcff7f96d 391 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 28-03-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-446205 AM348_RS15085 f4a97ea3808dd05f232e9991aeb39e42 248 SUPERFAMILY SSF110395 3 243 9.94E-76 T 28-03-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 AM348_RS15085 f4a97ea3808dd05f232e9991aeb39e42 248 Pfam PF03932 CutC family 3 199 2.1E-80 T 28-03-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 AM348_RS15085 f4a97ea3808dd05f232e9991aeb39e42 248 Gene3D G3DSA:3.20.20.380 1 248 6.8E-92 T 28-03-2018 AM348_RS15085 f4a97ea3808dd05f232e9991aeb39e42 248 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 243 37.991 T 28-03-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 502 3.4E-144 T 28-03-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 Gene3D G3DSA:1.10.3410.10 263 390 2.6E-23 T 28-03-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 SMART SM00471 62 282 6.2E-11 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 Pfam PF13286 Phosphohydrolase-associated domain 381 499 3.8E-6 T 28-03-2018 IPR026875 Phosphohydrolase-associated domain AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 Gene3D G3DSA:1.10.3210.10 3 262 1.4E-54 T 28-03-2018 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 SUPERFAMILY SSF109604 251 432 3.45E-67 T 28-03-2018 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 SUPERFAMILY SSF109604 31 134 3.45E-67 T 28-03-2018 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 SUPERFAMILY SSF109604 182 215 3.45E-67 T 28-03-2018 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 SUPERFAMILY SSF109604 483 501 3.45E-67 T 28-03-2018 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 504 51.244 T 28-03-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 AM348_RS00815 8c5ed10e4fb6ffc9ab4124add2a65380 505 Pfam PF01966 HD domain 66 134 8.3E-9 T 28-03-2018 IPR006674 HD domain AM348_RS01545 99ecc7a9897ce78778e11642157fa79f 210 Gene3D G3DSA:3.30.980.10 161 210 1.9E-6 T 28-03-2018 AM348_RS01545 99ecc7a9897ce78778e11642157fa79f 210 Gene3D G3DSA:3.30.980.10 85 160 4.0E-7 T 28-03-2018 AM348_RS01545 99ecc7a9897ce78778e11642157fa79f 210 SUPERFAMILY SSF50447 1 73 2.54E-13 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS01545 99ecc7a9897ce78778e11642157fa79f 210 SUPERFAMILY SSF55186 85 201 1.15E-23 T 28-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AM348_RS01545 99ecc7a9897ce78778e11642157fa79f 210 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 174 196 3.7E-5 T 28-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM348_RS01545 99ecc7a9897ce78778e11642157fa79f 210 Pfam PF01411 tRNA synthetases class II (A) 29 71 1.7E-5 T 28-03-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AM348_RS11315 b5c0ffcb75d3ff10825b12cf63763a8c 86 SUPERFAMILY SSF54862 5 68 1.23E-17 T 28-03-2018 AM348_RS11315 b5c0ffcb75d3ff10825b12cf63763a8c 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS11315 b5c0ffcb75d3ff10825b12cf63763a8c 86 Gene3D G3DSA:3.30.70.20 21 58 2.7E-8 T 28-03-2018 AM348_RS11315 b5c0ffcb75d3ff10825b12cf63763a8c 86 Gene3D G3DSA:3.30.70.20 1 20 2.2E-5 T 28-03-2018 AM348_RS11315 b5c0ffcb75d3ff10825b12cf63763a8c 86 Pfam PF12838 4Fe-4S dicluster domain 8 55 3.4E-6 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS08555 aaba5811596c9794d06d8dbfbe7eeb3f 176 Pfam PF01923 Cobalamin adenosyltransferase 4 167 1.7E-50 T 28-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS08555 aaba5811596c9794d06d8dbfbe7eeb3f 176 Gene3D G3DSA:1.20.1200.10 13 173 4.3E-48 T 28-03-2018 AM348_RS08555 aaba5811596c9794d06d8dbfbe7eeb3f 176 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 10 126 2.0E-56 T 28-03-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS08555 aaba5811596c9794d06d8dbfbe7eeb3f 176 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 5 169 1.1E-50 T 28-03-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS08555 aaba5811596c9794d06d8dbfbe7eeb3f 176 SUPERFAMILY SSF89028 3 169 3.73E-54 T 28-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS13610 699b0ea693396e4c80e7037dfabc1858 110 Pfam PF07411 Domain of unknown function (DUF1508) 11 57 6.1E-21 T 28-03-2018 IPR010879 Domain of unknown function DUF1508 AM348_RS13610 699b0ea693396e4c80e7037dfabc1858 110 Pfam PF07411 Domain of unknown function (DUF1508) 61 108 1.6E-18 T 28-03-2018 IPR010879 Domain of unknown function DUF1508 AM348_RS13610 699b0ea693396e4c80e7037dfabc1858 110 SUPERFAMILY SSF160113 61 109 8.37E-15 T 28-03-2018 IPR010879 Domain of unknown function DUF1508 AM348_RS13610 699b0ea693396e4c80e7037dfabc1858 110 SUPERFAMILY SSF160113 3 61 2.09E-19 T 28-03-2018 IPR010879 Domain of unknown function DUF1508 AM348_RS13610 699b0ea693396e4c80e7037dfabc1858 110 Gene3D G3DSA:3.30.160.160 4 48 4.7E-17 T 28-03-2018 IPR010879 Domain of unknown function DUF1508 AM348_RS13610 699b0ea693396e4c80e7037dfabc1858 110 Gene3D G3DSA:3.30.160.160 54 99 4.5E-13 T 28-03-2018 IPR010879 Domain of unknown function DUF1508 AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 ProSitePatterns PS00211 ABC transporters family signature. 450 464 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 Gene3D G3DSA:3.40.50.300 313 539 1.3E-41 T 28-03-2018 AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 Pfam PF00005 ABC transporter 341 477 1.7E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 SMART SM00382 348 526 1.9E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 SUPERFAMILY SSF90123 5 299 3.53E-27 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 2 527 2.5E-113 T 28-03-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 SUPERFAMILY SSF52540 315 529 3.36E-47 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12860 ad1ca066e8e7bba3fa2b5e8942a7fd76 547 Gene3D G3DSA:1.20.1560.10 1 312 3.7E-23 T 28-03-2018 AM348_RS12950 f7dca76d48ba5ca172d05d204ace2034 185 Gene3D G3DSA:3.40.30.10 36 185 4.7E-28 T 28-03-2018 AM348_RS12950 f7dca76d48ba5ca172d05d204ace2034 185 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS12950 f7dca76d48ba5ca172d05d204ace2034 185 SUPERFAMILY SSF52833 46 178 7.58E-39 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS12950 f7dca76d48ba5ca172d05d204ace2034 185 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 178 1.9E-82 T 28-03-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 AM348_RS12950 f7dca76d48ba5ca172d05d204ace2034 185 Pfam PF08534 Redoxin 42 170 3.3E-23 T 28-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM348_RS12395 b1b9d8447f5c1f427e97c6a8e501ade3 91 Gene3D G3DSA:1.10.357.10 3 91 4.0E-4 T 28-03-2018 AM348_RS12395 b1b9d8447f5c1f427e97c6a8e501ade3 91 Pfam PF08891 YfcL protein 4 87 1.0E-35 T 28-03-2018 IPR014987 Uncharacterised protein family YfcL AM348_RS22710 cbc2746bbbad40f156667f67966eaaa2 335 SUPERFAMILY SSF49401 196 335 2.34E-13 T 28-03-2018 IPR008966 Adhesion domain AM348_RS22710 cbc2746bbbad40f156667f67966eaaa2 335 Gene3D G3DSA:2.60.40.1090 185 335 3.3E-13 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS22710 cbc2746bbbad40f156667f67966eaaa2 335 Pfam PF00419 Fimbrial protein 188 334 2.3E-18 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS14645 06fb735ccc1b2ea71c0fb76a8091e306 83 Gene3D G3DSA:3.30.240.10 3 80 2.7E-7 T 28-03-2018 AM348_RS14645 06fb735ccc1b2ea71c0fb76a8091e306 83 ProDom PD057771 CRO REGULATORY TRANSCRIPTION CP-933R REPRESSOR DNA-BINDING REGULATION BACTERIOPHAGE PROTEIN REGULATOR 8 74 1.0E-17 T 28-03-2018 IPR020114 Cro repressor, HK022-type AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 Gene3D G3DSA:3.30.70.20 3 80 6.8E-19 T 28-03-2018 AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 Pfam PF13247 4Fe-4S dicluster domain 59 153 2.4E-28 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 1.1E-79 T 28-03-2018 IPR014297 Dimethylsulphoxide reductase, chain B AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 SUPERFAMILY SSF54862 3 199 2.72E-70 T 28-03-2018 AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 Gene3D G3DSA:3.30.70.20 119 202 3.1E-17 T 28-03-2018 AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0024 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS20820 48f9efb138b226fcfea80e4fa6ece4f7 205 Gene3D G3DSA:3.30.70.20 81 118 4.6E-21 T 28-03-2018 AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 324 2.9E-25 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 SMART SM00382 47 239 4.0E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 Pfam PF00005 ABC transporter 38 189 2.0E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 SUPERFAMILY SSF52540 13 261 6.69E-73 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 Gene3D G3DSA:3.40.50.300 9 334 3.6E-78 T 28-03-2018 AM348_RS06315 7cff1d66449de7779c2b7bd1dd845d72 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 306 6.7E-19 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS06000 e4c0ca73655825421aa55185be6a2b4e 157 SUPERFAMILY SSF75217 1 152 1.5E-45 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS06000 e4c0ca73655825421aa55185be6a2b4e 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 153 2.2E-73 T 28-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS06000 e4c0ca73655825421aa55185be6a2b4e 157 Gene3D G3DSA:3.40.1280.10 1 156 4.1E-37 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS06000 e4c0ca73655825421aa55185be6a2b4e 157 Pfam PF00588 SpoU rRNA Methylase family 2 142 3.4E-33 T 28-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM348_RS06000 e4c0ca73655825421aa55185be6a2b4e 157 PIRSF PIRSF029256 1 154 7.9E-70 T 28-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS06000 e4c0ca73655825421aa55185be6a2b4e 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.192 T 28-03-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 PRINTS PR00969 Pili chaperone signature 125 140 3.7E-30 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 PRINTS PR00969 Pili chaperone signature 70 91 3.7E-30 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 PRINTS PR00969 Pili chaperone signature 98 115 3.7E-30 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 PRINTS PR00969 Pili chaperone signature 160 175 3.7E-30 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 PRINTS PR00969 Pili chaperone signature 25 34 3.7E-30 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 SUPERFAMILY SSF49354 21 143 5.76E-37 T 28-03-2018 IPR008962 PapD-like AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 Gene3D G3DSA:2.60.40.10 25 141 2.2E-32 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 143 3.1E-39 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 Gene3D G3DSA:2.60.40.10 145 230 2.5E-20 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 97 114 - T 28-03-2018 IPR018046 Pili assembly chaperone, conserved site AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 166 222 3.4E-14 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS11425 77d2b4f2fca37464e4783ac2cbed9560 230 SUPERFAMILY SSF49584 145 226 1.44E-18 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 Gene3D G3DSA:3.30.70.270 219 391 1.6E-47 T 28-03-2018 AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 Pfam PF00563 EAL domain 405 631 1.6E-74 T 28-03-2018 IPR001633 EAL domain AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 SMART SM00052 394 636 2.2E-105 T 28-03-2018 IPR001633 EAL domain AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 383 3.2E-37 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 SMART SM00267 214 384 1.3E-46 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 Pfam PF00990 Diguanylate cyclase, GGDEF domain 226 378 1.7E-39 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 Gene3D G3DSA:3.20.20.450 392 637 4.5E-95 T 28-03-2018 IPR001633 EAL domain AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 SUPERFAMILY SSF55073 230 385 8.63E-41 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS18340 7b1acea260fff3753c48e4c4045ee1e5 642 SUPERFAMILY SSF141868 399 634 3.4E-88 T 28-03-2018 IPR001633 EAL domain AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 Gene3D G3DSA:3.40.800.10 4 306 1.5E-92 T 28-03-2018 AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 ProSitePatterns PS01053 Arginase family signature. 228 249 - T 28-03-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 Hamap MF_01418 Agmatinase [speB]. 1 304 70.21 T 28-03-2018 IPR023694 Agmatinase GO:0008783|GO:0009446|GO:0030145 KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305 AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 PIRSF PIRSF036979 13 304 2.9E-101 T 28-03-2018 IPR006035 Ureohydrolase GO:0046872 AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 Pfam PF00491 Arginase family 34 297 1.1E-85 T 28-03-2018 IPR006035 Ureohydrolase GO:0046872 AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 TIGRFAM TIGR01230 agmatinase: agmatinase 22 299 1.1E-117 T 28-03-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 AM348_RS09305 40eb5ba1a026c4c1c4a3e83d9caebe15 306 SUPERFAMILY SSF52768 13 301 3.6E-91 T 28-03-2018 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 4.4E-250 T 28-03-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 SUPERFAMILY SSF52440 1 113 1.22E-46 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 SMART SM00878 336 441 7.1E-65 T 28-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 SUPERFAMILY SSF56059 83 347 2.47E-69 T 28-03-2018 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 2.1E-85 T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 Gene3D G3DSA:3.40.50.20 1 123 1.1E-51 T 28-03-2018 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 Gene3D G3DSA:3.30.1490.20 124 210 3.7E-20 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 8.0E-44 T 28-03-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 SUPERFAMILY SSF51246 331 444 8.89E-44 T 28-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 Gene3D G3DSA:3.30.470.20 211 444 5.7E-96 T 28-03-2018 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 28-03-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 AM348_RS07675 b1aaa799cfee92546101fb89012689b5 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 8.1E-38 T 28-03-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 SUPERFAMILY SSF101386 135 236 2.24E-24 T 28-03-2018 AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 100 6.5E-28 T 28-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 168 227 4.7E-8 T 28-03-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 SUPERFAMILY SSF101386 2 106 2.62E-26 T 28-03-2018 AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 Gene3D G3DSA:1.10.287.1080 122 222 6.9E-27 T 28-03-2018 AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 TIGRFAM TIGR00444 mazG: MazG family protein 10 257 1.9E-124 T 28-03-2018 IPR011551 NTP pyrophosphohydrolase MazG AM348_RS10000 65e134b511284e01ba13dc2073149d95 263 Gene3D G3DSA:1.10.287.1080 3 121 3.4E-41 T 28-03-2018 AM348_RS02125 0e118029a89e9754930173e52f534a4f 285 Pfam PF08543 Phosphomethylpyrimidine kinase 70 254 1.1E-15 T 28-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS02125 0e118029a89e9754930173e52f534a4f 285 SUPERFAMILY SSF53613 1 273 4.83E-65 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS02125 0e118029a89e9754930173e52f534a4f 285 Gene3D G3DSA:3.40.1190.20 1 285 5.4E-54 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS02125 0e118029a89e9754930173e52f534a4f 285 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 282 5.8E-108 T 28-03-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 28-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 SUPERFAMILY SSF52518 371 567 1.38E-68 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 8.9E-46 T 28-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 Gene3D G3DSA:3.40.50.970 356 558 9.4E-52 T 28-03-2018 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 Gene3D G3DSA:3.40.50.970 1 184 1.8E-65 T 28-03-2018 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 Gene3D G3DSA:3.40.50.1220 191 355 1.4E-54 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 SUPERFAMILY SSF52467 189 362 1.31E-62 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 SUPERFAMILY SSF52518 2 177 1.36E-63 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 1.5E-57 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 569 4.4E-282 T 28-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM348_RS01275 0b463a6b1b9b90d2266dd461e60c53b7 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 545 8.6E-49 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 Gene3D G3DSA:3.30.70.20 71 108 2.5E-20 T 28-03-2018 AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 Gene3D G3DSA:3.30.70.20 109 157 1.4E-14 T 28-03-2018 AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 SUPERFAMILY SSF54862 1 151 5.86E-61 T 28-03-2018 AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 Gene3D G3DSA:3.30.70.20 20 70 4.4E-12 T 28-03-2018 AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 Gene3D G3DSA:3.30.70.20 2 19 0.0054 T 28-03-2018 AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 Pfam PF13247 4Fe-4S dicluster domain 52 142 1.0E-27 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS22255 48ce5a7148f23fe9092a85df1ca3fe12 185 Pfam PF12800 4Fe-4S binding domain 9 23 0.021 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 SMART SM00354 6 77 8.2E-22 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 Gene3D G3DSA:3.40.50.2300 169 338 4.8E-33 T 28-03-2018 AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 SUPERFAMILY SSF53822 64 325 4.53E-56 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 67 315 9.1E-23 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 Gene3D G3DSA:1.10.260.40 5 61 9.6E-15 T 28-03-2018 AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 54 8.2E-9 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 Gene3D G3DSA:3.40.50.2300 62 168 2.4E-30 T 28-03-2018 AM348_RS06235 7ccda5093afef132d4a3a7bb0a62e0cc 338 SUPERFAMILY SSF47413 6 65 3.84E-11 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 Pfam PF00202 Aminotransferase class-III 40 453 1.4E-101 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 22 454 2.0E-215 T 28-03-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 263 300 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 Gene3D G3DSA:3.90.1150.10 333 454 3.4E-22 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 SUPERFAMILY SSF53383 31 453 2.09E-123 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 Gene3D G3DSA:3.90.1150.10 13 194 3.1E-38 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 PIRSF PIRSF000521 2 148 5.8E-8 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 PIRSF PIRSF000521 142 455 8.1E-36 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS15720 03d87fbf6a0d82e4d22cd1e677bb6fb9 461 Gene3D G3DSA:3.40.640.10 207 332 1.6E-38 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS17490 ab835f27e944a5026bc515f697b7fc8b 195 Pfam PF01427 D-ala-D-ala dipeptidase 6 186 9.1E-70 T 28-03-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AM348_RS17490 ab835f27e944a5026bc515f697b7fc8b 195 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 6 180 28.141 T 28-03-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AM348_RS17490 ab835f27e944a5026bc515f697b7fc8b 195 Gene3D G3DSA:3.30.1380.10 4 175 3.5E-48 T 28-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM348_RS17490 ab835f27e944a5026bc515f697b7fc8b 195 PIRSF PIRSF026671 2 187 5.0E-55 T 28-03-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 AM348_RS17490 ab835f27e944a5026bc515f697b7fc8b 195 SUPERFAMILY SSF55166 6 171 5.3E-56 T 28-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 1.8E-38 T 28-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 SUPERFAMILY SSF50249 5 82 9.42E-34 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 2.0E-35 T 28-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 Pfam PF00366 Ribosomal protein S17 10 76 4.0E-34 T 28-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 28-03-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 4.8E-14 T 28-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 4.8E-14 T 28-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 4.8E-14 T 28-03-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.05 T 28-03-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07385 77c56d4163e8d0896750efee8be53cce 84 Gene3D G3DSA:2.40.50.140 5 82 3.6E-35 T 28-03-2018 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 SUPERFAMILY SSF54364 13 86 1.57E-27 T 28-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 177 1.7E-37 T 28-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 Gene3D G3DSA:3.30.110.10 87 180 1.7E-35 T 28-03-2018 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 ProSitePatterns PS00938 Initiation factor 3 signature. 66 79 - T 28-03-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 Gene3D G3DSA:3.10.20.80 10 86 2.0E-30 T 28-03-2018 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 SUPERFAMILY SSF55200 90 179 4.84E-35 T 28-03-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 179 9.9E-76 T 28-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 9 179 30.259 T 28-03-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM348_RS18880 a96b0431bd8f0c768f4406ff5fceb431 180 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 3.7E-29 T 28-03-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 PRINTS PR00599 Methionine aminopeptidase-1 signature 373 385 1.1E-5 T 28-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 PRINTS PR00599 Methionine aminopeptidase-1 signature 256 272 1.1E-5 T 28-03-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 351 363 - T 28-03-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 Gene3D G3DSA:3.90.230.10 175 441 6.5E-89 T 28-03-2018 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 SMART SM01011 4 139 5.1E-59 T 28-03-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 Gene3D G3DSA:3.40.350.10 2 174 1.3E-48 T 28-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 SUPERFAMILY SSF55920 178 436 4.71E-89 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 SUPERFAMILY SSF53092 4 177 7.32E-53 T 28-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 Pfam PF00557 Metallopeptidase family M24 184 414 1.4E-66 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS09420 61f5b88d03610b260fe0d3bb02b11d70 441 Pfam PF05195 Aminopeptidase P, N-terminal domain 9 129 3.7E-35 T 28-03-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 AM348_RS09215 21687830c149616ee547dce53829dc27 378 SMART SM00729 6 223 3.0E-54 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS09215 21687830c149616ee547dce53829dc27 378 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 3.8E-141 T 28-03-2018 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 AM348_RS09215 21687830c149616ee547dce53829dc27 378 SUPERFAMILY SSF102114 5 376 5.1E-109 T 28-03-2018 AM348_RS09215 21687830c149616ee547dce53829dc27 378 Pfam PF04055 Radical SAM superfamily 11 175 1.2E-18 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS09215 21687830c149616ee547dce53829dc27 378 Pfam PF06969 HemN C-terminal domain 304 364 3.2E-9 T 28-03-2018 IPR010723 HemN, C-terminal AM348_RS09215 21687830c149616ee547dce53829dc27 378 Gene3D G3DSA:3.20.20.70 4 320 1.6E-47 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 Gene3D G3DSA:3.40.50.2000 460 780 4.1E-133 T 28-03-2018 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 Gene3D G3DSA:3.40.50.2000 8 459 6.7E-171 T 28-03-2018 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 PIRSF PIRSF000460 1 797 1.5E-204 T 28-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 8 794 0.0 T 28-03-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 Pfam PF00343 Carbohydrate phosphorylase 93 794 0.0 T 28-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 SUPERFAMILY SSF53756 5 795 2.75E-293 T 28-03-2018 AM348_RS06945 d15980e3e3573764955cf94f1e59ad92 797 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 638 650 - T 28-03-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 Gene3D G3DSA:3.10.350.10 399 445 8.2E-16 T 28-03-2018 AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 Gene3D G3DSA:1.10.530.10 68 246 4.1E-34 T 28-03-2018 AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 SUPERFAMILY SSF53955 99 249 1.29E-41 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 Gene3D G3DSA:3.10.350.10 329 398 1.5E-13 T 28-03-2018 AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 SUPERFAMILY SSF54106 400 443 9.68E-11 T 28-03-2018 IPR018392 LysM domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 121 149 - T 28-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 SUPERFAMILY SSF54106 341 384 2.22E-10 T 28-03-2018 IPR018392 LysM domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 SMART SM00257 401 443 1.5E-13 T 28-03-2018 IPR018392 LysM domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 SMART SM00257 342 385 7.2E-14 T 28-03-2018 IPR018392 LysM domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 Pfam PF01476 LysM domain 402 442 6.9E-11 T 28-03-2018 IPR018392 LysM domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 Pfam PF01476 LysM domain 343 384 4.3E-12 T 28-03-2018 IPR018392 LysM domain AM348_RS00555 30e61133e6362bc8bc52e94df2ad252f 452 Pfam PF01464 Transglycosylase SLT domain 102 214 5.5E-29 T 28-03-2018 IPR008258 Transglycosylase SLT domain 1 AM348_RS03350 bbd094dac23f6fe7e6a577926180f063 313 Gene3D G3DSA:3.40.50.2300 28 133 6.3E-23 T 28-03-2018 AM348_RS03350 bbd094dac23f6fe7e6a577926180f063 313 Pfam PF13407 Periplasmic binding protein domain 30 285 5.7E-56 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS03350 bbd094dac23f6fe7e6a577926180f063 313 Gene3D G3DSA:3.40.50.2300 134 311 3.6E-39 T 28-03-2018 AM348_RS03350 bbd094dac23f6fe7e6a577926180f063 313 SUPERFAMILY SSF53822 9 307 9.59E-80 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Gene3D G3DSA:2.40.340.10 330 402 2.5E-21 T 28-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 SUPERFAMILY SSF63867 328 407 1.57E-25 T 28-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 254 287 - T 28-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 168 2.2E-47 T 28-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Gene3D G3DSA:2.170.190.11 66 142 2.9E-30 T 28-03-2018 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Gene3D G3DSA:3.40.980.10 151 325 1.4E-53 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Pfam PF00994 Probable molybdopterin binding domain 182 317 9.1E-28 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Pfam PF03454 MoeA C-terminal region (domain IV) 332 404 2.2E-21 T 28-03-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 Gene3D G3DSA:3.90.105.10 27 65 5.0E-11 T 28-03-2018 AM348_RS21090 57997f85d491143d9135719e6775e99d 411 SMART SM00852 181 318 2.6E-44 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21090 57997f85d491143d9135719e6775e99d 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 177 314 9.4E-35 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21090 57997f85d491143d9135719e6775e99d 411 SUPERFAMILY SSF53218 178 321 4.84E-44 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21090 57997f85d491143d9135719e6775e99d 411 SUPERFAMILY SSF63882 7 177 9.55E-59 T 28-03-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 SMART SM00079 22 243 2.7E-4 T 28-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 Gene3D G3DSA:3.40.190.10 138 243 1.5E-18 T 28-03-2018 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 SMART SM00062 22 243 2.1E-88 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 2 241 6.6E-94 T 28-03-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0006810|GO:0030288 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 SUPERFAMILY SSF53850 1 242 3.49E-73 T 28-03-2018 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 Gene3D G3DSA:3.40.190.10 14 137 1.7E-37 T 28-03-2018 AM348_RS13475 6c94286292821b5cf4edd063373d6961 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 1.5E-68 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 SMART SM00895 96 220 1.8E-16 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 SUPERFAMILY SSF48008 94 226 9.94E-22 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 SUPERFAMILY SSF46785 2 76 2.84E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.2E-7 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.2E-7 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 Pfam PF07729 FCD domain 96 219 1.3E-18 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 SMART SM00345 13 72 9.2E-26 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 Gene3D G3DSA:1.20.120.530 87 232 1.3E-22 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 Gene3D G3DSA:1.10.10.10 1 74 2.2E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08415 eed86991801ae2ee41019a74ca747b7c 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 1.6E-22 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 Gene3D G3DSA:1.10.10.10 5 85 2.7E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 1.2E-12 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 SUPERFAMILY SSF46785 5 88 4.08E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 Gene3D G3DSA:3.40.190.10 90 180 4.8E-14 T 28-03-2018 AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 Pfam PF03466 LysR substrate binding domain 89 291 1.8E-23 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 Gene3D G3DSA:3.40.190.10 181 258 1.4E-6 T 28-03-2018 AM348_RS13910 9e12bbe331307ef751261fdb52d1a7f3 309 SUPERFAMILY SSF53850 90 292 6.52E-25 T 28-03-2018 AM348_RS05835 554fb38460d0d0220776eb3dba7a8ea3 213 Pfam PF00156 Phosphoribosyl transferase domain 48 159 4.9E-11 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS05835 554fb38460d0d0220776eb3dba7a8ea3 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.956 T 28-03-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS05835 554fb38460d0d0220776eb3dba7a8ea3 213 SUPERFAMILY SSF53271 2 211 2.36E-51 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS05835 554fb38460d0d0220776eb3dba7a8ea3 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 2.2E-71 T 28-03-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS05835 554fb38460d0d0220776eb3dba7a8ea3 213 Gene3D G3DSA:3.40.50.2020 1 193 5.2E-49 T 28-03-2018 AM348_RS22215 9a32ca8ec3302857d4f33defa3034aca 301 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 23 291 4.6E-86 T 28-03-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AM348_RS22215 9a32ca8ec3302857d4f33defa3034aca 301 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 2 301 185.822 T 28-03-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AM348_RS22215 9a32ca8ec3302857d4f33defa3034aca 301 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 22 292 5.9E-111 T 28-03-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 SMART SM00869 655 923 5.9E-47 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 Pfam PF03797 Autotransporter beta-domain 658 912 8.1E-49 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 Gene3D G3DSA:2.160.20.20 54 561 1.3E-54 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 SUPERFAMILY SSF51126 75 561 5.34E-47 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 SUPERFAMILY SSF103515 621 934 3.79E-51 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 Gene3D G3DSA:2.40.128.130 613 934 1.2E-53 T 28-03-2018 AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 455 934 1.5E-123 T 28-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM348_RS05685 1d950365ef52b3b0569f19b5d03241b8 934 Pfam PF03212 Pertactin 437 555 1.4E-9 T 28-03-2018 IPR004899 Pertactin, central region AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.7E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 SUPERFAMILY SSF46785 9 115 1.05E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 Gene3D G3DSA:3.40.190.10 93 179 1.8E-8 T 28-03-2018 AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 Pfam PF03466 LysR substrate binding domain 93 296 2.2E-34 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 Gene3D G3DSA:3.40.190.10 180 268 2.0E-27 T 28-03-2018 AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 SUPERFAMILY SSF53850 94 299 1.61E-38 T 28-03-2018 AM348_RS08685 a477d9012465035c55b4348d5f4aa62a 313 Gene3D G3DSA:1.10.10.10 8 91 5.7E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 Pfam PF08402 TOBE domain 273 344 7.0E-11 T 28-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 Pfam PF00005 ABC transporter 23 164 1.6E-37 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 Gene3D G3DSA:3.40.50.300 2 241 1.4E-77 T 28-03-2018 AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 SMART SM00382 31 214 5.2E-17 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 SUPERFAMILY SSF52540 7 245 4.56E-86 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 SUPERFAMILY SSF50331 240 344 2.67E-15 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS23630 2865d8897774e838bff4918974a69fa5 348 Gene3D G3DSA:2.40.50.140 276 337 1.2E-7 T 28-03-2018 AM348_RS20075 48a84e70ca7e7083908a81e55c5588fb 110 PIRSF PIRSF018100 1 109 2.7E-59 T 28-03-2018 IPR014491 Curli production protein CsgC AM348_RS20075 48a84e70ca7e7083908a81e55c5588fb 110 Pfam PF10610 Thin aggregative fimbriae synthesis protein 6 103 5.2E-47 T 28-03-2018 IPR014491 Curli production protein CsgC AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 SUPERFAMILY SSF50249 8 80 6.54E-16 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.119 T 28-03-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 Pfam PF00773 RNB domain 189 516 4.9E-85 T 28-03-2018 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 Pfam PF00575 S1 RNA binding domain 559 636 2.5E-10 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 SMART SM00955 189 517 4.8E-129 T 28-03-2018 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 28-03-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 SMART SM00357 23 79 4.0E-13 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 Gene3D G3DSA:2.40.50.140 558 644 9.4E-7 T 28-03-2018 AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 SUPERFAMILY SSF50249 176 556 6.0E-115 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 SUPERFAMILY SSF50249 83 171 3.26E-32 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 28-03-2018 IPR022966 Ribonuclease II/R, conserved site AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 SUPERFAMILY SSF50249 560 642 6.68E-19 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 Pfam PF08206 Ribonuclease B OB domain 24 80 2.1E-19 T 28-03-2018 IPR013223 Ribonuclease B, N-terminal OB domain AM348_RS16545 ae5627f56b41071320563f5ca1562c3c 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 641 2.5E-245 T 28-03-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 SUPERFAMILY SSF48168 10 221 1.96E-73 T 28-03-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 1.1E-180 T 28-03-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 1.6E-120 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 2.3E-39 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 2.3E-39 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 2.3E-39 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 2.3E-39 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 2.3E-39 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 2.3E-39 T 28-03-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 Pfam PF03477 ATP cone domain 6 92 1.7E-15 T 28-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 SUPERFAMILY SSF51998 222 740 2.08E-170 T 28-03-2018 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 Gene3D G3DSA:3.20.70.20 122 739 1.3E-148 T 28-03-2018 AM348_RS12800 d1fe5541c84b5ed879cb80fd615ceb57 761 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 142 219 3.0E-12 T 28-03-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 15 261 8.4E-92 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 SUPERFAMILY SSF53613 13 258 7.33E-60 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 Gene3D G3DSA:3.40.1190.20 3 262 4.7E-51 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 17 262 30.379 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 Pfam PF02110 Hydroxyethylthiazole kinase family 15 258 1.1E-98 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PIRSF PIRSF000513 9 262 7.2E-96 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 123 137 4.9E-43 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 67 75 4.9E-43 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 93 110 4.9E-43 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 167 184 4.9E-43 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 30 4.9E-43 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13420 75e26455ffab7f2a9c267fba2b46fc7d 262 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 36 57 4.9E-43 T 28-03-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS12700 bb43cb29a732ccb1cbd744d96094e25f 128 SUPERFAMILY SSF103481 32 126 1.83E-6 T 28-03-2018 AM348_RS12700 bb43cb29a732ccb1cbd744d96094e25f 128 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 1 125 19.718 T 28-03-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 Pfam PF13353 4Fe-4S single cluster domain 17 180 5.7E-10 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 Pfam PF04055 Radical SAM superfamily 27 231 5.1E-21 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 Gene3D G3DSA:3.30.70.20 31 57 0.001 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 SUPERFAMILY SSF102114 85 274 7.85E-12 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 Gene3D G3DSA:3.30.70.20 78 114 0.0017 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 47 58 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 ProSitePatterns PS01087 Radical activating enzymes signature. 19 40 - T 28-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 PIRSF PIRSF000371 1 287 6.6E-91 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 SUPERFAMILY SSF54862 43 129 6.28E-14 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 Gene3D G3DSA:3.80.30.10 115 281 4.8E-23 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 Gene3D G3DSA:3.30.70.20 58 77 1.0E-7 T 28-03-2018 AM348_RS01805 5ed4eb109000ed45e365034260da6b67 287 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 5 282 6.2E-119 T 28-03-2018 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 241 259 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 197 212 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 215 231 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 56 73 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 16 32 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 125 139 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 173 189 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 PRINTS PR01714 Ferric iron reductase signature 93 108 3.3E-65 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 Pfam PF06276 Ferric iron reductase FhuF-like transporter 93 237 2.9E-29 T 28-03-2018 IPR022770 Ferric iron reductase FhuF domain AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 241 261 2.4E-7 T 28-03-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 AM348_RS01880 c2896883f4caa4ce865284011db8ca16 262 TIGRFAM TIGR03951 Fe_III_red_FhuF: siderophore-iron reductase FhuF 87 262 7.8E-67 T 28-03-2018 IPR008090 Ferric iron reductase AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 299 307 - T 28-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 351 1.1E-159 T 28-03-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 Gene3D G3DSA:3.10.20.30 238 356 2.1E-30 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 Gene3D G3DSA:3.40.50.80 94 237 3.8E-29 T 28-03-2018 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 SUPERFAMILY SSF54292 236 350 2.56E-28 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 SUPERFAMILY SSF52343 94 242 2.23E-32 T 28-03-2018 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 269 342 3.0E-16 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 36 46 5.9E-8 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 212 220 5.9E-8 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 5.9E-8 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 5.9E-8 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 5.9E-8 T 28-03-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 1.1E-7 T 28-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00406 Cytochrome B5 reductase signature 212 220 1.1E-7 T 28-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 PRINTS PR00406 Cytochrome B5 reductase signature 116 135 1.1E-7 T 28-03-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 Pfam PF00970 Oxidoreductase FAD-binding domain 7 105 1.7E-10 T 28-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 Gene3D G3DSA:2.40.30.10 1 93 4.9E-19 T 28-03-2018 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 SUPERFAMILY SSF63380 2 107 8.78E-23 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS19590 1ece0156a3972a61c51bf2db61e52319 356 Pfam PF00175 Oxidoreductase NAD-binding domain 118 225 1.2E-17 T 28-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 7.8E-50 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 1.0E-217 T 28-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 Gene3D G3DSA:3.40.50.970 334 534 3.8E-49 T 28-03-2018 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 SUPERFAMILY SSF52467 183 342 4.05E-58 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 SUPERFAMILY SSF52518 357 546 3.22E-65 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 Gene3D G3DSA:3.40.50.1220 185 333 4.6E-49 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 165 7.1E-57 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 321 2.3E-42 T 28-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 Gene3D G3DSA:3.40.50.970 1 184 1.7E-62 T 28-03-2018 AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 SUPERFAMILY SSF52518 1 173 1.46E-62 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS05115 9c92af7df48db89fee24393df2b6335d 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 28-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM348_RS10510 fc4f077eb268a92f29017fcaaedd8fa3 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 28-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM348_RS10510 fc4f077eb268a92f29017fcaaedd8fa3 61 Hamap MF_00167 Carbon storage regulator [csrA]. 1 61 20.514 T 28-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM348_RS10510 fc4f077eb268a92f29017fcaaedd8fa3 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 28-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM348_RS10510 fc4f077eb268a92f29017fcaaedd8fa3 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 57 2.0E-31 T 28-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM348_RS10510 fc4f077eb268a92f29017fcaaedd8fa3 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-20 T 28-03-2018 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 AM348_RS10485 fb4a6f825f4da2e5857fcb0c1e3d8040 359 SUPERFAMILY SSF53955 46 354 1.41E-100 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS10485 fb4a6f825f4da2e5857fcb0c1e3d8040 359 Pfam PF13406 Transglycosylase SLT domain 57 351 1.3E-93 T 28-03-2018 IPR031304 Transglycosylase SLT domain 2 AM348_RS10485 fb4a6f825f4da2e5857fcb0c1e3d8040 359 Gene3D G3DSA:1.10.530.10 239 359 2.2E-33 T 28-03-2018 AM348_RS10485 fb4a6f825f4da2e5857fcb0c1e3d8040 359 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 61 353 5.1E-129 T 28-03-2018 IPR011757 Lytic transglycosylase MltB AM348_RS10485 fb4a6f825f4da2e5857fcb0c1e3d8040 359 Gene3D G3DSA:1.10.8.350 52 128 4.0E-10 T 28-03-2018 AM348_RS10485 fb4a6f825f4da2e5857fcb0c1e3d8040 359 Gene3D G3DSA:1.10.8.350 129 233 5.3E-36 T 28-03-2018 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 Gene3D G3DSA:1.10.357.10 57 188 9.5E-15 T 28-03-2018 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 Gene3D G3DSA:1.10.10.60 4 56 1.0E-14 T 28-03-2018 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 SUPERFAMILY SSF48498 79 186 5.64E-18 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS17345 998276db9e98c328fe65250b4f929470 192 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 97 188 2.6E-7 T 28-03-2018 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 4.9E-5 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 4.9E-5 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 51 7.3E-11 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS17345 998276db9e98c328fe65250b4f929470 192 SUPERFAMILY SSF46689 4 69 1.59E-14 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 Pfam PF00005 ABC transporter 33 196 3.4E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 Pfam PF00005 ABC transporter 341 490 2.0E-29 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 288 7.6E-8 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 543 575 9.2E-8 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 SUPERFAMILY SSF52540 313 563 1.38E-70 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 Gene3D G3DSA:3.40.50.300 9 303 8.9E-67 T 28-03-2018 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 Gene3D G3DSA:3.40.50.300 310 599 1.3E-70 T 28-03-2018 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 SUPERFAMILY SSF52540 13 268 5.44E-64 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 ProSitePatterns PS00211 ABC transporters family signature. 464 478 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 SMART SM00382 41 246 1.1E-17 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 SMART SM00382 349 549 1.2E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21070 a455f7a8183468f7e1b3202c3a605ba5 623 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 28-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 Gene3D G3DSA:3.30.1340.10 1 85 3.7E-32 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 SUPERFAMILY SSF55594 1 82 2.36E-27 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 4.4E-31 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 4.5E-20 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 4.5E-20 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 4.5E-20 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.2E-28 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS12010 4fa7e8caa81cc83f6adad99da67a0679 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 28-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM348_RS16485 f16760ff1f3d307aee73f793ee48b2a3 196 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 7.4E-94 T 28-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM348_RS16485 f16760ff1f3d307aee73f793ee48b2a3 196 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 48.662 T 28-03-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM348_RS16485 f16760ff1f3d307aee73f793ee48b2a3 196 Pfam PF00925 GTP cyclohydrolase II 5 170 4.5E-68 T 28-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM348_RS16485 f16760ff1f3d307aee73f793ee48b2a3 196 SUPERFAMILY SSF142695 3 173 2.35E-67 T 28-03-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 Gene3D G3DSA:1.25.20.10 28 390 6.8E-53 T 28-03-2018 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 501 529 - T 28-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 Pfam PF14718 Soluble lytic murein transglycosylase L domain 407 472 2.6E-23 T 28-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 Gene3D G3DSA:1.10.530.10 473 645 5.6E-42 T 28-03-2018 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 Gene3D G3DSA:1.10.1240.20 404 472 1.5E-19 T 28-03-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 SUPERFAMILY SSF53955 479 641 8.44E-53 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 SUPERFAMILY SSF48435 28 477 1.29E-136 T 28-03-2018 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 AM348_RS01740 a9ccf35748d41846419866f61e7fe692 645 Pfam PF01464 Transglycosylase SLT domain 484 595 1.2E-34 T 28-03-2018 IPR008258 Transglycosylase SLT domain 1 AM348_RS19430 5a1aad089cdfa61f0cec5e0974c4e127 259 SUPERFAMILY SSF161098 3 254 2.71E-55 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19430 5a1aad089cdfa61f0cec5e0974c4e127 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 253 1.1E-19 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19430 5a1aad089cdfa61f0cec5e0974c4e127 259 Gene3D G3DSA:1.10.3720.10 5 258 8.7E-39 T 28-03-2018 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 SUPERFAMILY SSF53187 107 426 1.22E-103 T 28-03-2018 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 109 421 9.1E-105 T 28-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 PIRSF PIRSF036388 1 427 7.2E-238 T 28-03-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 Hamap MF_00504 Peptidase B [pepB]. 3 427 65.067 T 28-03-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 275 282 - T 28-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 PRINTS PR00481 Cytosol aminopeptidase signature 190 207 4.5E-45 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 PRINTS PR00481 Cytosol aminopeptidase signature 212 233 4.5E-45 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 PRINTS PR00481 Cytosol aminopeptidase signature 271 291 4.5E-45 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 PRINTS PR00481 Cytosol aminopeptidase signature 299 314 4.5E-45 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 PRINTS PR00481 Cytosol aminopeptidase signature 249 270 4.5E-45 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 Gene3D G3DSA:3.40.630.10 93 427 6.8E-114 T 28-03-2018 AM348_RS11545 36c187392e8e308baaa75fcb39613bd3 427 Pfam PF12404 Peptidase 5 81 3.9E-34 T 28-03-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 SUPERFAMILY SSF51735 1 263 2.95E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 4.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 Gene3D G3DSA:3.40.50.720 2 265 1.1E-37 T 28-03-2018 AM348_RS20975 314d589934bfcd9dcad8ce90bc526706 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 263 8.4E-27 T 28-03-2018 AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 65 82 - T 28-03-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 188 1.1E-49 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 SUPERFAMILY SSF50891 26 189 5.26E-58 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 1.5E-10 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 1.5E-10 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 1.5E-10 T 28-03-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 AM348_RS07155 c6e05eccaef3421f0edea55652451e8b 190 Gene3D G3DSA:2.40.100.10 13 190 4.3E-53 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 4.5E-12 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.2E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.2E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.2E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 Gene3D G3DSA:1.10.10.10 1 92 3.1E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 SUPERFAMILY SSF53850 88 294 7.6E-40 T 28-03-2018 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 Pfam PF03466 LysR substrate binding domain 90 293 2.5E-39 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 Gene3D G3DSA:3.40.190.10 181 267 7.9E-19 T 28-03-2018 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 Gene3D G3DSA:3.40.190.10 93 180 1.1E-19 T 28-03-2018 AM348_RS19645 93e4765618001bb00c4502ac136e8853 316 SUPERFAMILY SSF46785 11 113 3.0E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02665 66ea95015d4560fe4d1e8d96c76c0b47 212 Gene3D G3DSA:3.30.1060.10 26 204 1.6E-79 T 28-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM348_RS02665 66ea95015d4560fe4d1e8d96c76c0b47 212 Pfam PF01625 Peptide methionine sulfoxide reductase 46 199 2.2E-67 T 28-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM348_RS02665 66ea95015d4560fe4d1e8d96c76c0b47 212 SUPERFAMILY SSF55068 6 208 3.53E-85 T 28-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM348_RS02665 66ea95015d4560fe4d1e8d96c76c0b47 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 43 205 39.073 T 28-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM348_RS02665 66ea95015d4560fe4d1e8d96c76c0b47 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 199 9.6E-71 T 28-03-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 AM348_RS16580 4e2f2fb28ec02db1d461c19b24c43092 321 Gene3D G3DSA:1.10.3720.10 4 303 7.8E-42 T 28-03-2018 AM348_RS16580 4e2f2fb28ec02db1d461c19b24c43092 321 SUPERFAMILY SSF161098 70 138 1.44E-23 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS16580 4e2f2fb28ec02db1d461c19b24c43092 321 SUPERFAMILY SSF161098 178 300 1.44E-23 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS16580 4e2f2fb28ec02db1d461c19b24c43092 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 1.5E-43 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 28-03-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 SUPERFAMILY SSF46911 3 74 7.06E-29 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 8.1E-38 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-18 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-18 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-18 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-18 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 3.0E-22 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 Pfam PF01084 Ribosomal protein S18 19 68 9.1E-25 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.313 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02755 4d776f2becc435db4210658806b3f9df 75 Gene3D G3DSA:4.10.640.10 1 75 1.5E-31 T 28-03-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Gene3D G3DSA:3.40.630.30 356 523 1.9E-13 T 28-03-2018 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 SUPERFAMILY SSF52540 175 285 2.57E-11 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Pfam PF05127 Helicase 197 337 4.1E-39 T 28-03-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Pfam PF17176 tRNA-binding domain 537 654 1.4E-40 T 28-03-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain KEGG: 00650+2.3.1.19 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 SUPERFAMILY SSF55729 370 418 6.73E-10 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 SUPERFAMILY SSF55729 454 513 6.73E-10 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 18 652 48.267 T 28-03-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 KEGG: 00650+2.3.1.19 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Gene3D G3DSA:3.40.50.300 170 322 4.2E-6 T 28-03-2018 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Pfam PF13718 GNAT acetyltransferase 2 370 484 2.6E-17 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS11760 28d4ed685a0ee5bef88325fd4f77b654 671 Pfam PF08351 Domain of unknown function (DUF1726) 66 149 3.3E-6 T 28-03-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 AM348_RS15365 cd5d1fb71112fe61dc4ff80a00a2e16b 152 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 30.652 T 28-03-2018 IPR009328 Protein of unknown function DUF986 AM348_RS15365 cd5d1fb71112fe61dc4ff80a00a2e16b 152 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 7 148 5.0E-69 T 28-03-2018 IPR009328 Protein of unknown function DUF986 AM348_RS15365 cd5d1fb71112fe61dc4ff80a00a2e16b 152 PIRSF PIRSF020687 1 152 4.1E-65 T 28-03-2018 IPR009328 Protein of unknown function DUF986 AM348_RS15365 cd5d1fb71112fe61dc4ff80a00a2e16b 152 Pfam PF06173 Protein of unknown function (DUF986) 4 150 1.7E-61 T 28-03-2018 IPR009328 Protein of unknown function DUF986 AM348_RS03245 00e212a15f4c02c8d0e46a10ea991d71 262 SMART SM00382 29 229 3.3E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03245 00e212a15f4c02c8d0e46a10ea991d71 262 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 4 250 3.8E-103 T 28-03-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 AM348_RS03245 00e212a15f4c02c8d0e46a10ea991d71 262 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS03245 00e212a15f4c02c8d0e46a10ea991d71 262 Pfam PF00005 ABC transporter 20 181 1.1E-33 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03245 00e212a15f4c02c8d0e46a10ea991d71 262 Gene3D G3DSA:3.40.50.300 1 261 2.2E-59 T 28-03-2018 AM348_RS03245 00e212a15f4c02c8d0e46a10ea991d71 262 SUPERFAMILY SSF52540 3 241 6.39E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 SUPERFAMILY SSF46785 1 86 8.34E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 Gene3D G3DSA:3.40.190.10 80 180 1.3E-15 T 28-03-2018 AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 Pfam PF03466 LysR substrate binding domain 87 289 6.5E-34 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.3E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.3E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.3E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 Gene3D G3DSA:3.40.190.10 181 262 5.3E-11 T 28-03-2018 AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 9.4E-22 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 Gene3D G3DSA:1.10.10.10 1 79 2.4E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19650 0784f7809e7cb03aea0ccd356dbb861a 305 SUPERFAMILY SSF53850 89 294 9.15E-32 T 28-03-2018 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 Gene3D G3DSA:2.60.40.10 37 157 4.1E-29 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 38 156 4.9E-35 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 SUPERFAMILY SSF49584 162 245 1.96E-19 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 180 244 1.5E-13 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 Gene3D G3DSA:2.60.40.10 159 252 2.7E-23 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 PRINTS PR00969 Pili chaperone signature 138 153 5.1E-29 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 PRINTS PR00969 Pili chaperone signature 82 103 5.1E-29 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 PRINTS PR00969 Pili chaperone signature 174 189 5.1E-29 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 PRINTS PR00969 Pili chaperone signature 38 47 5.1E-29 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 PRINTS PR00969 Pili chaperone signature 112 129 5.1E-29 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00880 c1e2e5aeead6edc6d6a2b49821d753dd 252 SUPERFAMILY SSF49354 34 156 1.49E-32 T 28-03-2018 IPR008962 PapD-like AM348_RS03485 a219ea80d38bd59846873775a7f3759e 174 SUPERFAMILY SSF50249 4 174 3.43E-62 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS03485 a219ea80d38bd59846873775a7f3759e 174 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.59 T 28-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AM348_RS03485 a219ea80d38bd59846873775a7f3759e 174 PIRSF PIRSF002070 2 157 4.3E-41 T 28-03-2018 AM348_RS03485 a219ea80d38bd59846873775a7f3759e 174 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 174 4.4E-62 T 28-03-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 AM348_RS03485 a219ea80d38bd59846873775a7f3759e 174 Pfam PF00436 Single-strand binding protein family 6 112 4.8E-42 T 28-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AM348_RS03485 a219ea80d38bd59846873775a7f3759e 174 Gene3D G3DSA:2.40.50.140 1 118 5.9E-46 T 28-03-2018 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 SMART SM00448 7 120 4.8E-32 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 Gene3D G3DSA:1.10.10.10 131 215 2.8E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.7E-15 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.7E-15 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.7E-15 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 Pfam PF00072 Response regulator receiver domain 9 121 1.8E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 SUPERFAMILY SSF46894 140 210 1.12E-21 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 SUPERFAMILY SSF52172 6 136 1.42E-33 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 SMART SM00421 151 208 3.4E-24 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 2.2E-24 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12960 b0707c16e926f14a68794d864376cb94 215 Gene3D G3DSA:3.40.50.2300 6 130 4.1E-35 T 28-03-2018 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 215 5.2E-21 T 28-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Gene3D G3DSA:2.40.110.10 115 215 2.1E-23 T 28-03-2018 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Gene3D G3DSA:1.20.140.10 216 380 5.5E-47 T 28-03-2018 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Gene3D G3DSA:1.10.540.10 1 114 4.9E-19 T 28-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 SUPERFAMILY SSF56645 1 227 7.46E-51 T 28-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 109 1.9E-14 T 28-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 PIRSF PIRSF016578 6 84 7.2E-7 T 28-03-2018 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 PIRSF PIRSF016578 241 378 2.5E-9 T 28-03-2018 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Hamap MF_01052 Crotonobetainyl-CoA dehydrogenase [caiA]. 1 380 92.847 T 28-03-2018 IPR023450 Crotonobetainyl-CoA reductase CaiA GO:0009437|GO:0016627|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 SUPERFAMILY SSF47203 226 379 4.51E-45 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 28-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 28-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM348_RS01500 324d06bc6ff619ca9f1516f4e127cb48 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 4.2E-45 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS08755 d88fab3cb9d7e65ff849ad92d2acd02c 225 Gene3D G3DSA:1.20.1550.10 15 225 2.3E-46 T 28-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM348_RS08755 d88fab3cb9d7e65ff849ad92d2acd02c 225 SUPERFAMILY SSF158442 188 213 2.48E-31 T 28-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM348_RS08755 d88fab3cb9d7e65ff849ad92d2acd02c 225 SUPERFAMILY SSF158442 29 158 2.48E-31 T 28-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM348_RS08755 d88fab3cb9d7e65ff849ad92d2acd02c 225 Hamap MF_01311 Protein-disulfide oxidoreductase DsbI [dsbI]. 7 224 57.183 T 28-03-2018 IPR023792 Protein-disulfide oxidoreductase DsbI AM348_RS08755 d88fab3cb9d7e65ff849ad92d2acd02c 225 Pfam PF02600 Disulfide bond formation protein DsbB 26 213 5.7E-41 T 28-03-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 Gene3D G3DSA:1.10.287.90 28 113 1.1E-19 T 28-03-2018 AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 239 2.3E-123 T 28-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 Gene3D G3DSA:2.60.40.420 114 281 2.7E-53 T 28-03-2018 IPR008972 Cupredoxin AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 Pfam PF06481 COX Aromatic Rich Motif 239 285 1.0E-17 T 28-03-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 SUPERFAMILY SSF81464 29 116 8.18E-24 T 28-03-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 PIRSF PIRSF000292 1 313 5.7E-134 T 28-03-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 SUPERFAMILY SSF49503 120 282 6.39E-54 T 28-03-2018 IPR008972 Cupredoxin AM348_RS23230 9bd87a0cbc4f80d36015d1d8249c5dfd 315 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 149 218 5.1E-5 T 28-03-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 Pfam PF03466 LysR substrate binding domain 91 296 2.3E-39 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 SUPERFAMILY SSF53850 91 301 1.23E-40 T 28-03-2018 AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 Gene3D G3DSA:1.10.10.10 2 86 1.3E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 SUPERFAMILY SSF46785 5 87 4.19E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.0E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 Gene3D G3DSA:3.40.190.10 94 180 2.4E-13 T 28-03-2018 AM348_RS20890 6e161949c0f81dfea33b4aeb2ac29b9b 303 Gene3D G3DSA:3.40.190.10 181 267 2.3E-21 T 28-03-2018 AM348_RS22880 b361d12a65153b50ab76291c99cdf060 445 Gene3D G3DSA:3.20.20.70 33 367 2.0E-37 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS22880 b361d12a65153b50ab76291c99cdf060 445 SUPERFAMILY SSF102114 41 430 2.75E-85 T 28-03-2018 AM348_RS22880 b361d12a65153b50ab76291c99cdf060 445 SMART SM00729 57 279 4.9E-48 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS22880 b361d12a65153b50ab76291c99cdf060 445 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 19 432 1.2E-171 T 28-03-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW AM348_RS22880 b361d12a65153b50ab76291c99cdf060 445 Pfam PF04055 Radical SAM superfamily 63 224 5.9E-13 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82866 296 497 8.11E-50 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82714 725 812 5.89E-23 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82866 809 1033 3.14E-44 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Gene3D G3DSA:3.30.2090.10 180 275 4.4E-17 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Gene3D G3DSA:1.20.1640.10 287 510 1.6E-45 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1049 0.0 T 28-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 8.8E-116 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82693 38 132 1.67E-27 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82693 567 671 9.94E-34 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82693 135 182 6.28E-27 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82693 274 330 6.28E-27 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 SUPERFAMILY SSF82714 182 271 7.85E-22 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Pfam PF00873 AcrB/AcrD/AcrF family 1 1030 0.0 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Gene3D G3DSA:3.30.70.1430 38 140 1.4E-29 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Gene3D G3DSA:3.30.70.1440 674 771 1.1E-19 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Gene3D G3DSA:1.20.1640.10 827 1033 1.2E-37 T 28-03-2018 AM348_RS23035 83bb84f0bd6d6f9cc72c39838e03cebf 1049 Gene3D G3DSA:3.30.70.1430 569 670 7.0E-21 T 28-03-2018 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 SUPERFAMILY SSF46626 168 274 1.46E-16 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 295 378 7.8E-12 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 Pfam PF00034 Cytochrome c 30 119 4.2E-6 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 Gene3D G3DSA:1.10.760.10 13 134 1.3E-17 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 PRINTS PR00605 Class IC cytochrome C signature 356 378 5.1E-5 T 28-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 PRINTS PR00605 Class IC cytochrome C signature 304 315 5.1E-5 T 28-03-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 SUPERFAMILY SSF46626 16 143 4.35E-19 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 PIRSF PIRSF000018 4 402 4.7E-130 T 28-03-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 SUPERFAMILY SSF46626 285 391 1.07E-22 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 Gene3D G3DSA:1.10.760.10 289 402 9.8E-21 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18485 06c18a1370e3a9b93be7ddf7606c6813 402 Gene3D G3DSA:1.10.760.10 147 288 1.4E-18 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS22815 4a3073f770086f16409b5b73f4056361 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22815 4a3073f770086f16409b5b73f4056361 228 SMART SM00382 35 223 9.7E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22815 4a3073f770086f16409b5b73f4056361 228 SUPERFAMILY SSF52540 6 226 2.33E-63 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22815 4a3073f770086f16409b5b73f4056361 228 Pfam PF00005 ABC transporter 27 174 3.8E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS22815 4a3073f770086f16409b5b73f4056361 228 Gene3D G3DSA:3.40.50.300 3 228 1.9E-60 T 28-03-2018 AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 9.8E-49 T 28-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 3.0E-29 T 28-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 260 1.2E-26 T 28-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 7.4E-117 T 28-03-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-14 T 28-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 SUPERFAMILY SSF117143 93 222 1.02E-34 T 28-03-2018 AM348_RS19905 abe8f4ca84cace1d7c59687644ee7fa8 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 28-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM348_RS16765 51690499f66ce10933352b65690bf969 311 SUPERFAMILY SSF52402 17 235 2.72E-54 T 28-03-2018 AM348_RS16765 51690499f66ce10933352b65690bf969 311 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 10 271 57.569 T 28-03-2018 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 AM348_RS16765 51690499f66ce10933352b65690bf969 311 Pfam PF01171 PP-loop family 42 204 2.9E-13 T 28-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AM348_RS16765 51690499f66ce10933352b65690bf969 311 Gene3D G3DSA:3.40.50.620 7 246 5.8E-39 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS16765 51690499f66ce10933352b65690bf969 311 PIRSF PIRSF004976 2 271 8.5E-76 T 28-03-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 AM348_RS15465 5a7d4374170ebd01e92cfc037c8b1b2d 533 ProSitePatterns PS01303 BCCT family of transporters signature. 312 321 - T 28-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS15465 5a7d4374170ebd01e92cfc037c8b1b2d 533 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 56 499 2.0E-158 T 28-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM348_RS15465 5a7d4374170ebd01e92cfc037c8b1b2d 533 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 13 499 2.3E-114 T 28-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 3.9E-36 T 28-03-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 Gene3D G3DSA:3.40.47.10 3 162 2.4E-42 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 SUPERFAMILY SSF53901 3 317 2.05E-70 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 Gene3D G3DSA:3.40.47.10 163 317 3.5E-42 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 1.7E-149 T 28-03-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 7.9E-31 T 28-03-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM348_RS19830 8acb0fd81b9874913f206a309c00e121 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.069 T 28-03-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 39 92 2.6E-17 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Gene3D G3DSA:2.20.25.90 34 95 8.5E-15 T 28-03-2018 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 SMART SM00926 39 93 4.0E-14 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 44 61 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 31 1.3E-4 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 SUPERFAMILY SSF50692 688 828 2.15E-41 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Gene3D G3DSA:3.40.50.740 304 668 6.2E-66 T 28-03-2018 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Pfam PF00384 Molybdopterin oxidoreductase 96 567 6.5E-91 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 28-03-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042128|GO:0042597|GO:0051539|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Hamap MF_01630 Nitrate reductase [napA]. 1 828 30.555 T 28-03-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042128|GO:0042597|GO:0051539|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 SUPERFAMILY SSF53706 37 700 4.19E-204 T 28-03-2018 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Gene3D G3DSA:3.40.50.740 99 272 4.2E-37 T 28-03-2018 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Gene3D G3DSA:2.40.40.20 669 828 5.3E-35 T 28-03-2018 AM348_RS12895 0a0ca6e936ef54d99baf43876d1511b3 828 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 1.8E-24 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 SUPERFAMILY SSF101353 256 465 8.37E-61 T 28-03-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 28-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 SUPERFAMILY SSF55681 4 255 2.41E-108 T 28-03-2018 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 208.764 T 28-03-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 Gene3D G3DSA:3.30.980.10 553 713 3.2E-47 T 28-03-2018 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 Gene3D G3DSA:3.30.930.10 2 252 4.0E-118 T 28-03-2018 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 SUPERFAMILY SSF55186 552 708 1.83E-51 T 28-03-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 SUPERFAMILY SSF50447 455 551 5.1E-21 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 Pfam PF01411 tRNA synthetases class II (A) 7 556 1.1E-239 T 28-03-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 1.5E-33 T 28-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 1.5E-33 T 28-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 1.5E-33 T 28-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 1.5E-33 T 28-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 1.5E-33 T 28-03-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 7.5E-18 T 28-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 Pfam PF02272 DHHA1 domain 732 871 6.4E-32 T 28-03-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 AM348_RS10505 52aca40802152fdd76cbe404655787bb 875 SMART SM00863 653 696 7.4E-22 T 28-03-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 AM348_RS10755 08b832dc96b54d75bb81d29ec7acf9e8 471 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 19 471 9.6E-132 T 28-03-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase AM348_RS10755 08b832dc96b54d75bb81d29ec7acf9e8 471 Pfam PF13727 CoA-binding domain 116 245 5.7E-15 T 28-03-2018 AM348_RS10755 08b832dc96b54d75bb81d29ec7acf9e8 471 Pfam PF02397 Bacterial sugar transferase 281 463 2.5E-66 T 28-03-2018 IPR003362 Bacterial sugar transferase AM348_RS10755 08b832dc96b54d75bb81d29ec7acf9e8 471 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 21 471 3.1E-147 T 28-03-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 AM348_RS10755 08b832dc96b54d75bb81d29ec7acf9e8 471 Gene3D G3DSA:3.40.50.720 141 269 5.0E-10 T 28-03-2018 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 SUPERFAMILY SSF53697 10 255 2.89E-52 T 28-03-2018 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 SUPERFAMILY SSF54631 261 317 1.02E-9 T 28-03-2018 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 43 311 2.0E-132 T 28-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 Pfam PF00571 CBS domain 199 256 4.7E-4 T 28-03-2018 IPR000644 CBS domain AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 Pfam PF00571 CBS domain 265 315 4.8E-5 T 28-03-2018 IPR000644 CBS domain AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 PIRSF PIRSF004692 1 321 7.7E-122 T 28-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 Gene3D G3DSA:3.40.50.10490 2 194 5.9E-46 T 28-03-2018 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 Pfam PF01380 SIS domain 39 170 5.6E-29 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS10450 5637015b3af46601a9d7c1156eb4a572 321 Gene3D G3DSA:3.10.580.10 195 318 5.6E-19 T 28-03-2018 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 ProSitePatterns PS00455 Putative AMP-binding domain signature. 139 150 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Gene3D G3DSA:3.40.50.980 145 281 2.0E-25 T 28-03-2018 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Hamap MF_00731 2-succinylbenzoate--CoA ligase [menE]. 4 448 35.408 T 28-03-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Gene3D G3DSA:3.30.300.30 351 452 2.6E-15 T 28-03-2018 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Gene3D G3DSA:3.40.50.980 5 144 8.9E-22 T 28-03-2018 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 SUPERFAMILY SSF56801 8 450 4.32E-92 T 28-03-2018 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Pfam PF13193 AMP-binding enzyme C-terminal domain 366 422 1.1E-5 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Pfam PF00501 AMP-binding enzyme 13 355 1.4E-50 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 Gene3D G3DSA:2.30.38.10 282 350 7.7E-9 T 28-03-2018 AM348_RS12690 8feaf54f3c6e79f2f2468ddc0d830a5c 459 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 29 445 1.2E-114 T 28-03-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 AM348_RS14445 711f4b8cab8c14b91042403b79864ae6 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 18 104 4.8E-27 T 28-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM348_RS14445 711f4b8cab8c14b91042403b79864ae6 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 2 104 2.9E-39 T 28-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM348_RS14445 711f4b8cab8c14b91042403b79864ae6 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 2.3E-21 T 28-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM348_RS14445 711f4b8cab8c14b91042403b79864ae6 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 33 49 2.3E-21 T 28-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM348_RS14445 711f4b8cab8c14b91042403b79864ae6 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 2.3E-21 T 28-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM348_RS14445 711f4b8cab8c14b91042403b79864ae6 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 2 104 17.982 T 28-03-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 SUPERFAMILY SSF56601 14 292 1.13E-75 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 383 2.4E-23 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 Gene3D G3DSA:2.60.410.10 311 382 1.7E-16 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 1.1E-101 T 28-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 Gene3D G3DSA:3.40.710.10 14 310 1.4E-46 T 28-03-2018 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 SMART SM00936 292 383 5.4E-31 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 SUPERFAMILY SSF69189 292 385 2.75E-23 T 28-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 5.7E-17 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 5.7E-17 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS22130 39569196e74dbedc97932bfd72dc0087 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 5.7E-17 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 47 2.0E-5 T 28-03-2018 AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 SUPERFAMILY SSF143414 3 90 3.01E-23 T 28-03-2018 AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 Pfam PF00936 BMC domain 4 79 5.7E-21 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 SMART SM00877 3 79 1.0E-24 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 Gene3D G3DSA:1.10.10.10 117 174 9.1E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 28-03-2018 IPR020808 Bacterial microcompartments protein, conserved site AM348_RS11905 bd4a7507bc5f0d3b8a806ea9f489f34d 176 Pfam PF16365 Ethanolamine utilization protein EutK C-terminus 120 173 7.4E-34 T 28-03-2018 IPR032298 Ethanolamine utilization protein EutK, C-terminal AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 SUPERFAMILY SSF55874 431 555 6.68E-19 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Pfam PF00672 HAMP domain 176 223 6.9E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 PIRSF PIRSF003167 285 565 5.6E-102 T 28-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 PIRSF PIRSF003167 1 301 2.0E-76 T 28-03-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 127 8.4E-23 T 28-03-2018 IPR029095 NarX-like, N-terminal AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 SMART SM00387 465 559 3.5E-13 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 SUPERFAMILY SSF158472 176 225 6.02E-6 T 28-03-2018 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Pfam PF07730 Histidine kinase 361 425 1.1E-18 T 28-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Gene3D G3DSA:3.30.565.10 428 565 6.9E-25 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 468 555 7.4E-9 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Gene3D G3DSA:1.20.58.60 343 427 0.52 T 28-03-2018 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Gene3D G3DSA:1.20.58.60 32 241 0.23 T 28-03-2018 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 SMART SM00304 174 227 7.8E-9 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS11795 3366b4525f3552d01c745f811ae44ac2 565 Gene3D G3DSA:3.30.450.40 242 342 0.25 T 28-03-2018 IPR029016 GAF domain-like AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 Pfam PF00266 Aminotransferase class-V 4 350 1.2E-69 T 28-03-2018 IPR000192 Aminotransferase class V domain AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 Gene3D G3DSA:3.90.1150.10 260 360 6.6E-36 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 361 50.875 T 28-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 208 - T 28-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 SUPERFAMILY SSF53383 4 360 2.74E-111 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 Gene3D G3DSA:3.40.640.10 16 259 7.0E-23 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 5.0E-153 T 28-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AM348_RS20765 d0abb7dca83eedb93c0b34888aac06f4 362 PIRSF PIRSF000525 1 362 4.9E-148 T 28-03-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 AM348_RS12795 21684f5b9942eeee9850f5a42c6c4725 376 Pfam PF00268 Ribonucleotide reductase, small chain 32 332 3.5E-49 T 28-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12795 21684f5b9942eeee9850f5a42c6c4725 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 28-03-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS12795 21684f5b9942eeee9850f5a42c6c4725 376 Gene3D G3DSA:1.10.620.20 1 346 3.4E-115 T 28-03-2018 AM348_RS12795 21684f5b9942eeee9850f5a42c6c4725 376 SUPERFAMILY SSF47240 3 340 1.87E-116 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS18990 e13b3a48cf7b56093669d8837bd1c2b6 191 Gene3D G3DSA:2.60.120.10 109 177 5.9E-5 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS18990 e13b3a48cf7b56093669d8837bd1c2b6 191 Hamap MF_01591 Protein Ves [ves]. 1 191 56.26 T 28-03-2018 IPR023482 Uncharacterised protein family Ves AM348_RS18990 e13b3a48cf7b56093669d8837bd1c2b6 191 Gene3D G3DSA:2.60.120.10 6 108 1.2E-33 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS18990 e13b3a48cf7b56093669d8837bd1c2b6 191 SUPERFAMILY SSF51182 1 182 1.33E-48 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS18990 e13b3a48cf7b56093669d8837bd1c2b6 191 Pfam PF05962 HutD 5 175 3.6E-47 T 28-03-2018 IPR010282 Uncharacterised protein family HutD/Ves AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 SMART SM00490 270 351 5.2E-30 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 Pfam PF00270 DEAD/DEAH box helicase 33 206 1.2E-44 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 Pfam PF00271 Helicase conserved C-terminal domain 243 351 3.3E-28 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 SMART SM00487 28 234 2.3E-51 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 Gene3D G3DSA:3.40.50.300 235 421 4.8E-43 T 28-03-2018 AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 28-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.92 T 28-03-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 SUPERFAMILY SSF52540 84 363 1.94E-68 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05055 0548440fef9d2834e6169b9f8594fc70 422 Gene3D G3DSA:3.40.50.300 3 234 2.5E-50 T 28-03-2018 AM348_RS05215 2ae780ba3b18226ea5948079068707bf 498 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 5.1E-25 T 28-03-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 AM348_RS05215 2ae780ba3b18226ea5948079068707bf 498 SUPERFAMILY SSF52540 11 271 3.38E-18 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05215 2ae780ba3b18226ea5948079068707bf 498 Pfam PF12592 Protein of unknown function (DUF3763) 443 497 3.8E-20 T 28-03-2018 IPR022547 ATPase, RavA, C-terminal GO:0016820 AM348_RS05215 2ae780ba3b18226ea5948079068707bf 498 Hamap MF_01625 ATPase RavA [ravA]. 1 498 57.192 T 28-03-2018 IPR023671 ATPase RavA GO:0005737|GO:0016887 AM348_RS05215 2ae780ba3b18226ea5948079068707bf 498 Gene3D G3DSA:3.40.50.300 6 222 8.4E-18 T 28-03-2018 AM348_RS05215 2ae780ba3b18226ea5948079068707bf 498 SMART SM00382 38 187 2.5E-5 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS16200 fe259ceb73813147c685b32ec403ec32 162 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 103 8.5E-49 T 28-03-2018 IPR018738 Protein of unknown function DUF2280 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Pfam PF00703 Glycosyl hydrolases family 2 221 334 7.6E-16 T 28-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 337 629 3.8E-121 T 28-03-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 386 411 - T 28-03-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 SUPERFAMILY SSF51445 337 623 9.48E-104 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Gene3D G3DSA:2.60.120.260 3 219 2.4E-66 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 PRINTS PR00132 Glycosyl hydrolase family 2 signature 147 162 5.4E-38 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 PRINTS PR00132 Glycosyl hydrolase family 2 signature 376 394 5.4E-38 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 PRINTS PR00132 Glycosyl hydrolase family 2 signature 448 463 5.4E-38 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 PRINTS PR00132 Glycosyl hydrolase family 2 signature 532 547 5.4E-38 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 PRINTS PR00132 Glycosyl hydrolase family 2 signature 345 359 5.4E-38 T 28-03-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 SUPERFAMILY SSF49303 622 730 1.04E-29 T 28-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Gene3D G3DSA:2.70.98.10 735 1027 3.4E-76 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Hamap MF_01687 Beta-galactosidase [lacZ]. 6 1027 17.585 T 28-03-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 SUPERFAMILY SSF49785 15 219 3.12E-68 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 SUPERFAMILY SSF74650 739 1024 1.02E-94 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Gene3D G3DSA:2.60.40.10 626 733 6.0E-25 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Gene3D G3DSA:3.20.20.80 335 625 3.5E-86 T 28-03-2018 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 448 462 - T 28-03-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-6798695 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 SMART SM01038 752 1025 9.1E-120 T 28-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 SUPERFAMILY SSF49303 221 334 1.38E-25 T 28-03-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Pfam PF16353 Domain of unknown function(DUF4981) 640 726 6.3E-18 T 28-03-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Pfam PF02929 Beta galactosidase small chain 756 1023 5.5E-60 T 28-03-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Gene3D G3DSA:2.60.40.10 220 334 4.9E-21 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00090 32450845eb6f735f514d340e89aca2d4 1027 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 52 219 4.1E-70 T 28-03-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 9.5E-30 T 28-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 9.5E-30 T 28-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 9.5E-30 T 28-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 9.5E-30 T 28-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 SUPERFAMILY SSF52540 4 286 1.78E-47 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 2.2E-77 T 28-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 Gene3D G3DSA:3.40.50.300 1 289 3.9E-41 T 28-03-2018 AM348_RS07205 fb2308c2702a405c867926acb2e6dc2d 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 28-03-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS01420 3ca6561b78cddecc1fd88282b01c43f6 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 321 3.8E-108 T 28-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM348_RS01420 3ca6561b78cddecc1fd88282b01c43f6 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 325 36.142 T 28-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM348_RS01420 3ca6561b78cddecc1fd88282b01c43f6 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 324 2.1E-130 T 28-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM348_RS01420 3ca6561b78cddecc1fd88282b01c43f6 330 SUPERFAMILY SSF53659 5 327 3.17E-115 T 28-03-2018 AM348_RS01420 3ca6561b78cddecc1fd88282b01c43f6 330 Gene3D G3DSA:3.40.718.10 1 330 4.1E-133 T 28-03-2018 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 46.871 T 28-03-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 SUPERFAMILY SSF82679 1 97 1.11E-27 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 Gene3D G3DSA:2.30.30.30 110 162 2.6E-5 T 28-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 Pfam PF02357 Transcription termination factor nusG 3 95 2.4E-19 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 Gene3D G3DSA:3.30.70.940 1 97 1.1E-18 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 SMART SM00738 1 100 2.7E-31 T 28-03-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-112387|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 AM348_RS04775 2c41c9fa103802851f09ec6dc3238634 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 1.0E-66 T 28-03-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 AM348_RS17630 781510e81638d54cafc226c1cf87824d 377 Gene3D G3DSA:2.40.160.50 41 377 4.1E-34 T 28-03-2018 AM348_RS17630 781510e81638d54cafc226c1cf87824d 377 Pfam PF01103 Surface antigen 110 325 1.4E-14 T 28-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM348_RS06015 93fb9f6f093fec0f1e3f40e38f3fb7b5 551 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 544 1.6E-236 T 28-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AM348_RS06015 93fb9f6f093fec0f1e3f40e38f3fb7b5 551 Pfam PF02652 L-lactate permease 16 542 9.3E-231 T 28-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AM348_RS22555 777312d8c00b42e0b4bae4d024402d34 255 SMART SM00052 3 245 2.2E-81 T 28-03-2018 IPR001633 EAL domain AM348_RS22555 777312d8c00b42e0b4bae4d024402d34 255 SUPERFAMILY SSF141868 10 253 5.62E-80 T 28-03-2018 IPR001633 EAL domain AM348_RS22555 777312d8c00b42e0b4bae4d024402d34 255 Gene3D G3DSA:3.20.20.450 2 255 1.6E-82 T 28-03-2018 IPR001633 EAL domain AM348_RS22555 777312d8c00b42e0b4bae4d024402d34 255 Pfam PF00563 EAL domain 10 240 2.9E-64 T 28-03-2018 IPR001633 EAL domain AM348_RS15485 ea8a35d51d910bb64b479085cd9c46fa 270 Pfam PF13614 AAA domain 3 159 1.8E-20 T 28-03-2018 IPR025669 AAA domain AM348_RS15485 ea8a35d51d910bb64b479085cd9c46fa 270 Gene3D G3DSA:3.40.50.300 1 260 1.7E-55 T 28-03-2018 AM348_RS15485 ea8a35d51d910bb64b479085cd9c46fa 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 9.0E-111 T 28-03-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 AM348_RS15485 ea8a35d51d910bb64b479085cd9c46fa 270 SUPERFAMILY SSF52540 1 268 7.57E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15485 ea8a35d51d910bb64b479085cd9c46fa 270 PIRSF PIRSF003092 1 270 1.4E-100 T 28-03-2018 IPR025501 ATP binding protein MinD AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 Gene3D G3DSA:3.40.50.1100 20 133 1.3E-32 T 28-03-2018 AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 Gene3D G3DSA:3.40.50.1100 134 323 6.6E-59 T 28-03-2018 AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 312 1.4E-136 T 28-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 312 2.0E-145 T 28-03-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 SUPERFAMILY SSF53686 3 317 2.36E-97 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 300 3.9E-68 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS12015 34fbe6d6461f0b7a865808753d3e1e67 323 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 28-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 Gene3D G3DSA:1.10.10.10 46 199 1.7E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 191 2.3E-19 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 Hamap MF_00982 Transcriptional regulatory protein RcsA [rcsA]. 1 207 48.908 T 28-03-2018 IPR030866 Transcriptional regulatory protein RcsA GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 4.8E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 4.8E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 4.8E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 SUPERFAMILY SSF46894 126 186 4.42E-11 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 152 179 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14375 79dc0a2da114c36bf6784f67333cf319 207 SMART SM00421 135 192 2.0E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Gene3D G3DSA:1.20.1060.10 543 656 3.9E-33 T 28-03-2018 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 ProSitePatterns PS00447 DNA polymerase family A signature. 754 773 - T 28-03-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SUPERFAMILY SSF53098 326 518 3.74E-56 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 2.3E-30 T 28-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Gene3D G3DSA:3.30.420.10 322 542 1.6E-49 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SUPERFAMILY SSF56672 523 928 1.56E-160 T 28-03-2018 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Pfam PF01612 3'-5' exonuclease 330 517 2.2E-46 T 28-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Gene3D G3DSA:3.40.50.1010 7 184 7.4E-68 T 28-03-2018 IPR029060 PIN domain-like AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SUPERFAMILY SSF47807 171 291 5.68E-30 T 28-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SMART SM00474 330 517 1.1E-49 T 28-03-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SMART SM00482 686 892 1.2E-126 T 28-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Gene3D G3DSA:3.30.70.370 657 752 2.4E-17 T 28-03-2018 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Gene3D G3DSA:3.30.70.370 754 928 1.7E-52 T 28-03-2018 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SMART SM00475 7 268 4.7E-141 T 28-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Pfam PF00476 DNA polymerase family A 552 925 1.1E-159 T 28-03-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 845 861 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 813 824 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 700 723 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 678 693 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 655 677 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 791 802 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 754 779 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 730 743 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 875 888 2.1E-80 T 28-03-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 TIGRFAM TIGR00593 pola: DNA polymerase I 9 928 3.1E-287 T 28-03-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 1.9E-54 T 28-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SUPERFAMILY SSF88723 7 170 1.04E-56 T 28-03-2018 IPR029060 PIN domain-like AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 Gene3D G3DSA:1.10.150.20 185 269 1.3E-24 T 28-03-2018 AM348_RS04660 ef659cd8a06038fb01a2e8734086afe0 928 SMART SM00279 173 208 1.2E-13 T 28-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AM348_RS02775 06921978835b2928777f55f1ecfd0458 91 Pfam PF07338 Protein of unknown function (DUF1471) 36 91 1.0E-18 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS02775 06921978835b2928777f55f1ecfd0458 91 SUPERFAMILY SSF159871 3 91 1.01E-22 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS02775 06921978835b2928777f55f1ecfd0458 91 Gene3D G3DSA:3.30.1660.10 20 91 1.2E-20 T 28-03-2018 IPR025543 Dodecin-like AM348_RS13865 c4d1ee7ed7fd5a27c569ef2fbf095300 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 3.6E-118 T 28-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AM348_RS13865 c4d1ee7ed7fd5a27c569ef2fbf095300 258 Pfam PF00977 Histidine biosynthesis protein 5 239 1.3E-78 T 28-03-2018 IPR006062 Histidine biosynthesis GO:0000105 AM348_RS13865 c4d1ee7ed7fd5a27c569ef2fbf095300 258 SUPERFAMILY SSF51366 1 257 2.35E-73 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS13865 c4d1ee7ed7fd5a27c569ef2fbf095300 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 45.06 T 28-03-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 AM348_RS13865 c4d1ee7ed7fd5a27c569ef2fbf095300 258 Gene3D G3DSA:3.20.20.70 4 252 4.4E-58 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 47 447 4.0E-181 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 SUPERFAMILY SSF56601 23 473 5.93E-100 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 Gene3D G3DSA:3.40.710.10 20 477 8.0E-38 T 28-03-2018 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 58 77 5.6E-39 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 360 374 5.6E-39 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 424 437 5.6E-39 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 345 359 5.6E-39 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 286 308 5.6E-39 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS08035 97725904d7624844a2bfa4dc7da2e98c 477 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 20 468 1.1E-171 T 28-03-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 SMART SM00357 6 70 3.9E-29 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 2.4E-31 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 PRINTS PR00050 Cold shock protein signature 43 61 6.8E-17 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 PRINTS PR00050 Cold shock protein signature 28 37 6.8E-17 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 PRINTS PR00050 Cold shock protein signature 7 22 6.8E-17 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 28-03-2018 IPR019844 Cold-shock conserved site AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 Gene3D G3DSA:2.40.50.140 4 70 1.3E-28 T 28-03-2018 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 PIRSF PIRSF002599 1 70 1.2E-24 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS13490 a39e886f3b6aafac1c15825b20eb5dad 70 SUPERFAMILY SSF50249 2 69 1.73E-25 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS18175 16f1ca2f0310e5012a999859c93962cd 109 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 35 97 2.0E-17 T 28-03-2018 IPR018660 C-type lysozyme inhibitor AM348_RS18175 16f1ca2f0310e5012a999859c93962cd 109 SUPERFAMILY SSF141488 28 107 5.89E-24 T 28-03-2018 IPR018660 C-type lysozyme inhibitor AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 6.1E-107 T 28-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 3.1E-51 T 28-03-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 28-03-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 PIRSF PIRSF002155 1 227 1.1E-77 T 28-03-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 SUPERFAMILY SSF56808 6 225 1.44E-82 T 28-03-2018 IPR023674 Ribosomal protein L1-like AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 Gene3D G3DSA:3.30.190.20 150 228 3.0E-21 T 28-03-2018 AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.331 T 28-03-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 AM348_RS03995 9727dde8756e9b3b89c605565fdf7ef5 235 Gene3D G3DSA:3.40.50.790 68 149 3.4E-35 T 28-03-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 Gene3D G3DSA:2.40.160.10 32 358 2.2E-51 T 28-03-2018 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 SUPERFAMILY SSF56935 23 358 1.54E-77 T 28-03-2018 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 104 114 2.7E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 160 171 2.7E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 313 330 2.7E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 58 69 2.7E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 235 247 2.7E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 Pfam PF00267 Gram-negative porin 28 358 3.6E-138 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 313 329 - T 28-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00183 E.coli/Salmonella-type porin signature 158 180 2.2E-67 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00183 E.coli/Salmonella-type porin signature 57 75 2.2E-67 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00183 E.coli/Salmonella-type porin signature 269 288 2.2E-67 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00183 E.coli/Salmonella-type porin signature 104 126 2.2E-67 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 2.2E-67 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS20650 ddf9122fa53663211c026174a9e4ae23 358 PRINTS PR00183 E.coli/Salmonella-type porin signature 241 258 2.2E-67 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS10950 35860bfc7c149341856d8eba0884e3fe 309 SUPERFAMILY SSF53822 22 300 6.75E-73 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS10950 35860bfc7c149341856d8eba0884e3fe 309 Gene3D G3DSA:3.40.50.2300 17 125 3.7E-21 T 28-03-2018 AM348_RS10950 35860bfc7c149341856d8eba0884e3fe 309 Gene3D G3DSA:3.40.50.2300 126 308 6.0E-39 T 28-03-2018 AM348_RS10950 35860bfc7c149341856d8eba0884e3fe 309 Pfam PF13407 Periplasmic binding protein domain 24 277 7.5E-57 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 174 237 7.9E-13 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 Gene3D G3DSA:2.60.40.10 155 249 2.1E-22 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 SUPERFAMILY SSF49354 32 150 5.76E-38 T 28-03-2018 IPR008962 PapD-like AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 SUPERFAMILY SSF49584 159 249 1.02E-19 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 32 150 2.7E-36 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 PRINTS PR00969 Pili chaperone signature 132 147 5.4E-31 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 PRINTS PR00969 Pili chaperone signature 33 42 5.4E-31 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 PRINTS PR00969 Pili chaperone signature 169 184 5.4E-31 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 PRINTS PR00969 Pili chaperone signature 79 100 5.4E-31 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 PRINTS PR00969 Pili chaperone signature 109 126 5.4E-31 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 Gene3D G3DSA:2.60.40.10 32 151 3.4E-33 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00500 f5a0921d1fd99b9ff7f264a817144ed4 258 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 108 125 - T 28-03-2018 IPR018046 Pili assembly chaperone, conserved site AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 Gene3D G3DSA:3.40.50.20 2 129 6.2E-53 T 28-03-2018 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 311 1.9E-140 T 28-03-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 SUPERFAMILY SSF56059 123 312 1.08E-59 T 28-03-2018 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 SUPERFAMILY SSF52440 2 122 1.5E-46 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 Hamap MF_00162 Glutathione synthetase [gshB]. 1 315 182.954 T 28-03-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 6.3E-48 T 28-03-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 3.8E-79 T 28-03-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 Gene3D G3DSA:3.30.1490.20 138 191 1.5E-23 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS09255 996d8fa9ccbb1ab5dddb4fe03bfd23d8 315 Gene3D G3DSA:3.30.470.20 192 300 9.3E-17 T 28-03-2018 AM348_RS08835 a6f65705b2c1f86bbae775b1053b27aa 193 SUPERFAMILY SSF52218 1 192 3.81E-42 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS08835 a6f65705b2c1f86bbae775b1053b27aa 193 Pfam PF02525 Flavodoxin-like fold 3 188 1.6E-36 T 28-03-2018 IPR003680 Flavodoxin-like fold AM348_RS08835 a6f65705b2c1f86bbae775b1053b27aa 193 Gene3D G3DSA:3.40.50.360 1 193 5.6E-36 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 Gene3D G3DSA:3.40.50.720 152 306 2.2E-33 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PIRSF PIRSF000350 1 437 2.0E-92 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 296 3.0E-56 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 Gene3D G3DSA:3.50.50.60 1 151 3.9E-21 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 28-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 328 434 3.2E-28 T 28-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 SUPERFAMILY SSF55424 324 437 2.06E-32 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 Gene3D G3DSA:3.30.390.30 327 440 2.9E-31 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 160 178 1.7E-26 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 1.7E-26 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-26 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 120 138 1.7E-26 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 243 259 1.7E-26 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 244 258 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 185 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 324 345 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 431 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 123 132 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 287 294 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.5E-50 T 28-03-2018 AM348_RS22580 7f2de6202863310dc9ec952ff79960e1 441 SUPERFAMILY SSF51905 2 351 7.18E-51 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 SUPERFAMILY SSF52540 40 88 2.18E-11 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 SUPERFAMILY SSF52540 573 597 2.18E-11 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 SUPERFAMILY SSF52540 477 542 2.18E-11 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 Pfam PF13307 Helicase C-terminal domain 459 616 2.0E-34 T 28-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 SMART SM00491 474 603 1.8E-54 T 28-03-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 SUPERFAMILY SSF52540 13 232 5.63E-27 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 Gene3D G3DSA:3.40.50.300 17 415 1.7E-32 T 28-03-2018 AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 Pfam PF04851 Type III restriction enzyme, res subunit 18 232 3.0E-5 T 28-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 Gene3D G3DSA:3.40.50.300 437 620 2.3E-12 T 28-03-2018 AM348_RS15425 6167a714505b5e1069b285ceb3d7469c 636 SMART SM00487 16 286 0.0018 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS05945 eb26109307d5de7c3fc7d08451b46c46 228 SUPERFAMILY SSF56112 31 182 3.09E-11 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS05945 eb26109307d5de7c3fc7d08451b46c46 228 Gene3D G3DSA:3.90.1200.10 13 201 5.5E-6 T 28-03-2018 AM348_RS05945 eb26109307d5de7c3fc7d08451b46c46 228 Pfam PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) 3 228 4.8E-23 T 28-03-2018 IPR009330 Lipopolysaccharide core heptose(II) kinase AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 Gene3D G3DSA:3.40.50.2300 6 138 2.5E-37 T 28-03-2018 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 Gene3D G3DSA:1.10.10.10 139 215 1.6E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 Pfam PF00072 Response regulator receiver domain 9 120 1.9E-30 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.1E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.1E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.1E-13 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 SUPERFAMILY SSF52172 6 135 8.68E-36 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 SMART SM00448 7 120 1.1E-36 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 SMART SM00421 153 210 1.3E-25 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 SUPERFAMILY SSF46894 147 213 1.94E-20 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS15855 9d8442aabd2e7c6a6407bac833c1e237 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 1.0E-22 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS16120 e8e2bb01b39936842b5e2338546ed6eb 132 Gene3D G3DSA:1.20.120.330 4 126 3.5E-14 T 28-03-2018 AM348_RS00245 614ff137dbfe1c7873cceec9faa48a72 426 Gene3D G3DSA:3.50.50.60 17 404 5.2E-39 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00245 614ff137dbfe1c7873cceec9faa48a72 426 Pfam PF01266 FAD dependent oxidoreductase 29 381 1.3E-54 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS00245 614ff137dbfe1c7873cceec9faa48a72 426 SUPERFAMILY SSF51905 28 252 9.06E-43 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00245 614ff137dbfe1c7873cceec9faa48a72 426 SUPERFAMILY SSF51905 344 411 9.06E-43 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 226 246 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 272 298 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 34 60 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 195 220 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 5 21 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 115 138 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PRINTS PR00954 Flagellar motor switch protein FliG signature 248 268 1.8E-75 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 Gene3D G3DSA:1.10.220.30 6 68 4.4E-10 T 28-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 Pfam PF14841 FliG middle domain 116 187 7.9E-24 T 28-03-2018 IPR032779 Flagellar motor switch protein FliG, middle domain AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 Gene3D G3DSA:1.10.220.30 195 332 1.2E-29 T 28-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 Gene3D G3DSA:1.10.220.30 69 190 1.8E-21 T 28-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 Pfam PF01706 FliG C-terminal domain 219 324 1.6E-37 T 28-03-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 PIRSF PIRSF003161 1 332 5.3E-118 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 Pfam PF14842 FliG N-terminal domain 5 104 1.7E-29 T 28-03-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 SUPERFAMILY SSF48029 116 325 8.5E-63 T 28-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 3 332 2.1E-150 T 28-03-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 AM348_RS14435 7c980be7594b27dcfbb3102d9e1ac079 332 SUPERFAMILY SSF48029 7 105 2.14E-18 T 28-03-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 8.8E-10 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Pfam PF08245 Mur ligase middle domain 108 291 1.2E-18 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 8.6E-272 T 28-03-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Gene3D G3DSA:3.90.190.20 313 451 1.3E-27 T 28-03-2018 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.356 T 28-03-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Gene3D G3DSA:3.40.1190.10 91 312 1.1E-37 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 SUPERFAMILY SSF51984 1 90 3.14E-24 T 28-03-2018 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 SUPERFAMILY SSF53623 95 308 3.14E-48 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Pfam PF01225 Mur ligase family, catalytic domain 2 101 2.5E-19 T 28-03-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 Gene3D G3DSA:3.40.50.720 1 90 3.5E-13 T 28-03-2018 AM348_RS02575 48a9ac4a67d85b6a2e99bb11a901bfde 458 SUPERFAMILY SSF53244 312 447 2.88E-37 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 SUPERFAMILY SSF51445 2 470 2.56E-165 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 28-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 Gene3D G3DSA:3.20.20.80 1 475 5.0E-156 T 28-03-2018 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 Pfam PF00232 Glycosyl hydrolase family 1 4 473 9.9E-134 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 28-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 438 450 2.8E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 413 430 2.8E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 2.8E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 402 2.8E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS11680 12c0ee20480d006dca32397b893b7732 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 2.8E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS21175 4ee1a6f03a1a916ce0bddfd5e8e4f0d1 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 111 3.9E-31 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS21175 4ee1a6f03a1a916ce0bddfd5e8e4f0d1 219 SUPERFAMILY SSF161098 13 202 5.89E-44 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21175 4ee1a6f03a1a916ce0bddfd5e8e4f0d1 219 Gene3D G3DSA:1.10.3720.10 1 218 1.3E-44 T 28-03-2018 AM348_RS21175 4ee1a6f03a1a916ce0bddfd5e8e4f0d1 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 5.7E-23 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS14140 cbdb4742f23fa1397256a03d68d66365 245 TIGRFAM TIGR00123 cbiM: cobalamin biosynthesis protein CbiM 31 241 2.5E-113 T 28-03-2018 IPR018024 Cobalamin (vitamin B12) biosynthesis protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 AM348_RS14140 cbdb4742f23fa1397256a03d68d66365 245 Hamap MF_01462 Cobalt transport protein CbiM [cbiM]. 31 244 27.535 T 28-03-2018 IPR018024 Cobalamin (vitamin B12) biosynthesis protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 AM348_RS14140 cbdb4742f23fa1397256a03d68d66365 245 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 32 237 1.4E-53 T 28-03-2018 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PIRSF PIRSF002869 1 511 1.3E-180 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 Pfam PF03023 MviN-like protein 28 478 4.6E-158 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 33 52 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 52 68 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 259 285 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 409 426 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 157 178 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 357 376 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 PRINTS PR01806 Virulence factor MviN signature 133 157 1.7E-87 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 509 2.2E-175 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS19950 56fec8f49cc2a9f1ae9f61d1eb64cb4f 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.382 T 28-03-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 1.9E-60 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 SUPERFAMILY SSF81330 12 127 3.01E-36 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 8.9E-15 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 8.9E-15 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 8.9E-15 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 28-03-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 131 5.7E-46 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS07490 f1812adae7d64e126da46fcaba8ea52b 137 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 134 31.235 T 28-03-2018 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 AM348_RS22760 81b8b63e4975b1ade0eefdb437d8088d 240 Gene3D G3DSA:3.60.21.10 1 228 5.9E-24 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS22760 81b8b63e4975b1ade0eefdb437d8088d 240 SUPERFAMILY SSF56300 3 224 4.83E-31 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS22760 81b8b63e4975b1ade0eefdb437d8088d 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 134.681 T 28-03-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AM348_RS22760 81b8b63e4975b1ade0eefdb437d8088d 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 232 2.8E-115 T 28-03-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 AM348_RS22760 81b8b63e4975b1ade0eefdb437d8088d 240 Pfam PF00149 Calcineurin-like phosphoesterase 4 199 2.9E-9 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 449 468 1.1E-28 T 28-03-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 342 360 1.1E-28 T 28-03-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 562 575 1.1E-28 T 28-03-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 321 336 1.1E-28 T 28-03-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 376 388 1.1E-28 T 28-03-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 607 730 1.5E-60 T 28-03-2018 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 Pfam PF03918 Cytochrome C biogenesis protein 611 734 1.2E-43 T 28-03-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 320 412 1.4E-22 T 28-03-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 426 567 2.3E-39 T 28-03-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 135 152 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 313 332 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 297 313 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 247 267 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 162 184 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 213 239 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 277 297 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 83 109 5.2E-70 T 28-03-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS03395 6743a17b00e31109de76ed9db7f0f80e 737 Pfam PF01578 Cytochrome C assembly protein 92 299 4.9E-47 T 28-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 Gene3D G3DSA:3.30.930.10 2 249 2.4E-73 T 28-03-2018 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 2 328 1.3E-140 T 28-03-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 338 59.77 T 28-03-2018 IPR023741 Lipoate-protein ligase A GO:0016979|GO:0018055 KEGG: 00785+6.3.1.20 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 Gene3D G3DSA:3.30.390.50 250 337 2.0E-23 T 28-03-2018 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 250 332 1.6E-19 T 28-03-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 SUPERFAMILY SSF82649 248 335 1.62E-24 T 28-03-2018 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 158 2.7E-8 T 28-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AM348_RS01775 fed5b5872907baf1e47a01f77396d977 338 SUPERFAMILY SSF55681 3 247 6.05E-81 T 28-03-2018 AM348_RS08270 fac16f05b26a890506355675f91116c7 523 Hamap MF_02031 Galactarate dehydratase (L-threo-forming) [garD]. 2 523 79.472 T 28-03-2018 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 AM348_RS08270 fac16f05b26a890506355675f91116c7 523 SMART SM00858 22 92 7.7E-14 T 28-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM348_RS08270 fac16f05b26a890506355675f91116c7 523 Pfam PF08666 SAF domain 22 92 3.5E-14 T 28-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM348_RS08270 fac16f05b26a890506355675f91116c7 523 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 119 521 5.8E-145 T 28-03-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AM348_RS08270 fac16f05b26a890506355675f91116c7 523 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 15 523 3.8E-282 T 28-03-2018 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 AM348_RS10290 c03850d9d619e501519924c349882ddb 240 Gene3D G3DSA:3.40.50.850 15 240 2.3E-32 T 28-03-2018 AM348_RS10290 c03850d9d619e501519924c349882ddb 240 SUPERFAMILY SSF52499 22 233 2.62E-33 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS10290 c03850d9d619e501519924c349882ddb 240 Pfam PF00857 Isochorismatase family 31 204 4.5E-28 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 Gene3D G3DSA:3.40.50.1860 119 214 1.4E-19 T 28-03-2018 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 190 200 - T 28-03-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 SUPERFAMILY SSF53681 5 116 1.5E-32 T 28-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 222 1.4E-54 T 28-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 SUPERFAMILY SSF53681 118 227 3.76E-22 T 28-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 Gene3D G3DSA:3.40.50.1860 1 118 7.5E-38 T 28-03-2018 AM348_RS13135 ef7896424a751cd747eb1a7cf93a066c 239 TIGRFAM TIGR00035 asp_race: aspartate racemase 4 203 1.5E-53 T 28-03-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Gene3D G3DSA:3.40.50.980 209 375 3.0E-20 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 49.072 T 28-03-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Pfam PF01553 Acyltransferase 15 137 1.7E-18 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 SUPERFAMILY SSF69593 6 171 1.44E-20 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 SUPERFAMILY SSF56801 221 713 4.84E-97 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 SMART SM00563 30 140 7.0E-28 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Gene3D G3DSA:2.30.38.10 526 612 3.2E-14 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Gene3D G3DSA:3.40.50.980 376 525 7.5E-45 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Gene3D G3DSA:3.30.300.30 617 715 1.8E-9 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Gene3D G3DSA:3.40.1130.10 5 208 1.1E-26 T 28-03-2018 AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS09710 dc7bbd7011dae670b042237fffc74eab 719 Pfam PF00501 AMP-binding enzyme 233 619 1.8E-67 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 3.3E-78 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 Gene3D G3DSA:3.90.226.10 1 222 2.8E-64 T 28-03-2018 AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 28-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.34 T 28-03-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 SUPERFAMILY SSF52096 15 280 1.99E-79 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 Gene3D G3DSA:1.10.12.10 225 273 3.4E-13 T 28-03-2018 IPR014748 Crontonase, C-terminal AM348_RS12680 5a8b16164fdace9dbf7fc8ac0bfd53b2 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 1.3E-150 T 28-03-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 Gene3D G3DSA:3.40.50.1860 20 139 9.1E-27 T 28-03-2018 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 200 210 - T 28-03-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 Pfam PF01177 Asp/Glu/Hydantoin racemase 26 235 3.7E-25 T 28-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 TIGRFAM TIGR00067 glut_race: glutamate racemase 24 272 2.5E-94 T 28-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 89 97 - T 28-03-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 SUPERFAMILY SSF53681 127 280 1.61E-33 T 28-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 SUPERFAMILY SSF53681 24 125 3.07E-31 T 28-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 Gene3D G3DSA:3.40.50.1860 140 281 5.1E-28 T 28-03-2018 AM348_RS04080 089f0ea0465841fa2093267e198a6083 283 Hamap MF_00258 Glutamate racemase [murI]. 22 274 35.24 T 28-03-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS14780 c3b15321f06cad34108b312717cf8ecc 149 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 13 110 6.6E-10 T 28-03-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component AM348_RS14780 c3b15321f06cad34108b312717cf8ecc 149 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 8 144 2.1E-23 T 28-03-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 SMART SM00100 2 122 1.1E-26 T 28-03-2018 IPR000595 Cyclic nucleotide-binding domain AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 SUPERFAMILY SSF51206 8 136 1.03E-35 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 Gene3D G3DSA:1.10.10.10 145 210 9.9E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 28-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 28-03-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 28-03-2018 IPR000595 Cyclic nucleotide-binding domain AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 28-03-2018 IPR018488 Cyclic nucleotide-binding, conserved site AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 Gene3D G3DSA:2.60.120.10 4 144 6.0E-34 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 SMART SM00419 160 208 4.5E-17 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS07185 c9b73d94c2816acb50d358a803904515 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS00025 1c2d8a2dc5e058a5df4c63ebfe2ab7b4 269 SUPERFAMILY SSF56529 1 259 1.57E-80 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS00025 1c2d8a2dc5e058a5df4c63ebfe2ab7b4 269 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 81 259 2.9E-21 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS00025 1c2d8a2dc5e058a5df4c63ebfe2ab7b4 269 Hamap MF_01655 2-keto-4-pentenoate hydratase [mhpD]. 1 260 56.658 T 28-03-2018 IPR023793 2-keto-4-pentenoate hydratase GO:0008684|GO:0019439|GO:0030145 KEGG: 00360+4.2.1.80|KEGG: 00362+4.2.1.80|KEGG: 00621+4.2.1.80|KEGG: 00622+4.2.1.80|MetaCyc: PWY-5162|MetaCyc: PWY-5645 AM348_RS00025 1c2d8a2dc5e058a5df4c63ebfe2ab7b4 269 Gene3D G3DSA:3.90.850.10 1 269 5.6E-56 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 1.2E-138 T 28-03-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 1.5E-16 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 1.5E-16 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 1.5E-16 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 28-03-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 Pfam PF00710 Asparaginase, N-terminal 6 187 1.6E-65 T 28-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 SUPERFAMILY SSF53774 3 335 4.32E-113 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 PIRSF PIRSF001220 1 334 1.0E-96 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 Gene3D G3DSA:3.40.50.40 210 337 4.3E-41 T 28-03-2018 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 28-03-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 SMART SM00870 5 323 3.8E-141 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 PIRSF PIRSF500176 2 332 3.1E-118 T 28-03-2018 AM348_RS19135 14989e02044a72703513fe35d51c578f 338 Gene3D G3DSA:3.40.50.1170 1 208 1.0E-79 T 28-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM348_RS05025 fa5fb5bd71acb16549325f7794058862 376 SUPERFAMILY SSF53756 2 371 5.23E-142 T 28-03-2018 AM348_RS05025 fa5fb5bd71acb16549325f7794058862 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 370 1.4E-128 T 28-03-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001 AM348_RS05025 fa5fb5bd71acb16549325f7794058862 376 Gene3D G3DSA:3.40.50.2000 1 211 1.6E-79 T 28-03-2018 AM348_RS05025 fa5fb5bd71acb16549325f7794058862 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 5.1E-180 T 28-03-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 AM348_RS05025 fa5fb5bd71acb16549325f7794058862 376 Gene3D G3DSA:3.40.50.2000 212 356 1.3E-38 T 28-03-2018 AM348_RS05025 fa5fb5bd71acb16549325f7794058862 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 66.493 T 28-03-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM348_RS22715 2e7c02d870fcf2716d0470e8bb7d12d0 873 SUPERFAMILY SSF141729 37 166 3.66E-34 T 28-03-2018 AM348_RS22715 2e7c02d870fcf2716d0470e8bb7d12d0 873 Pfam PF13953 PapC C-terminal domain 787 851 2.8E-21 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS22715 2e7c02d870fcf2716d0470e8bb7d12d0 873 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 314 324 - T 28-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM348_RS22715 2e7c02d870fcf2716d0470e8bb7d12d0 873 Pfam PF13954 PapC N-terminal domain 39 188 1.2E-48 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS22715 2e7c02d870fcf2716d0470e8bb7d12d0 873 Pfam PF00577 Outer membrane usher protein 200 778 2.0E-221 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11600 94e2979f2ed5478195784326798efb16 392 Pfam PF13360 PQQ-like domain 78 319 2.9E-51 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 Gene3D G3DSA:2.140.10.10 29 191 2.2E-29 T 28-03-2018 AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SUPERFAMILY SSF50998 34 382 3.23E-76 T 28-03-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily AM348_RS11600 94e2979f2ed5478195784326798efb16 392 Gene3D G3DSA:2.130.10.10 325 391 0.11 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS11600 94e2979f2ed5478195784326798efb16 392 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 392 40.741 T 28-03-2018 IPR017687 Outer membrane protein assembly factor BamB AM348_RS11600 94e2979f2ed5478195784326798efb16 392 Gene3D G3DSA:2.140.10.10 192 324 3.1E-17 T 28-03-2018 AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 329 361 2.1E-4 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 251 282 3.1E-5 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 289 320 250.0 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 65 96 2.7E-5 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 114 146 0.0011 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 155 186 4.9E-5 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 SMART SM00564 200 231 110.0 T 28-03-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat AM348_RS11600 94e2979f2ed5478195784326798efb16 392 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 390 1.5E-132 T 28-03-2018 IPR017687 Outer membrane protein assembly factor BamB AM348_RS22155 316a4ae07f368d3d738c969b37911e2e 262 Gene3D G3DSA:3.60.110.10 1 257 5.7E-56 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS22155 316a4ae07f368d3d738c969b37911e2e 262 SUPERFAMILY SSF56317 1 254 1.57E-57 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS22155 316a4ae07f368d3d738c969b37911e2e 262 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 143 163 - T 28-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AM348_RS22155 316a4ae07f368d3d738c969b37911e2e 262 Pfam PF00795 Carbon-nitrogen hydrolase 4 245 1.6E-36 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 28-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 Hamap MF_00496 Fructose-6-phosphate aldolase [fsa]. 1 220 49.973 T 28-03-2018 IPR023001 Fructose-6-phosphate aldolase GO:0016832 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 3.1E-46 T 28-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 28-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 215 3.5E-102 T 28-03-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 SUPERFAMILY SSF51569 1 218 2.09E-65 T 28-03-2018 AM348_RS04185 fdee4ec271d8a5e20145123b7d4b1e1e 220 Gene3D G3DSA:3.20.20.70 1 220 1.5E-59 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 SUPERFAMILY SSF52141 5 220 1.46E-95 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 Gene3D G3DSA:3.40.470.10 1 229 9.1E-106 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 SMART SM00986 49 210 9.3E-42 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 SMART SM00987 49 210 9.3E-42 T 28-03-2018 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 9.5E-90 T 28-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 28-03-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 6.6E-28 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11215 24350bb9de74d1d057c0b79ffb8181ef 229 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.277 T 28-03-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS22820 04e1630438a3eeaa57a36c8934a41a90 205 SUPERFAMILY SSF52266 29 203 6.34E-51 T 28-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM348_RS22820 04e1630438a3eeaa57a36c8934a41a90 205 Gene3D G3DSA:3.40.50.1110 26 205 3.1E-37 T 28-03-2018 AM348_RS22820 04e1630438a3eeaa57a36c8934a41a90 205 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 30 40 - T 28-03-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 AM348_RS22820 04e1630438a3eeaa57a36c8934a41a90 205 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 33 187 7.1E-25 T 28-03-2018 IPR013830 SGNH hydrolase-type esterase domain AM348_RS08315 de522028b17a6d6d2901129563667796 443 Pfam PF03222 Tryptophan/tyrosine permease family 29 438 1.7E-8 T 28-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM348_RS08315 de522028b17a6d6d2901129563667796 443 Hamap MF_01583 Threonine/serine transporter TdcC [tdcC]. 1 443 56.859 T 28-03-2018 IPR023726 Threonine/serine transporter TdcC GO:0015565|GO:0015826|GO:0016021|GO:0022889|GO:0032329 AM348_RS08315 de522028b17a6d6d2901129563667796 443 TIGRFAM TIGR00814 stp: serine transporter 17 433 1.0E-171 T 28-03-2018 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS05575 3325f640949dfa020635791cf7fae2d2 174 SUPERFAMILY SSF55961 33 173 1.91E-13 T 28-03-2018 AM348_RS05575 3325f640949dfa020635791cf7fae2d2 174 Gene3D G3DSA:3.30.530.20 17 174 4.2E-14 T 28-03-2018 IPR023393 START-like domain AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 1 677 36.05 T 28-03-2018 IPR007443 Penicillin-binding protein activator LpoA AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 SUPERFAMILY SSF53822 258 287 2.41E-74 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 SUPERFAMILY SSF53822 357 489 2.41E-74 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 SUPERFAMILY SSF53822 528 681 2.41E-74 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Pfam PF04348 LppC putative lipoprotein 355 677 8.4E-84 T 28-03-2018 IPR007443 Penicillin-binding protein activator LpoA AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Pfam PF04348 LppC putative lipoprotein 40 289 4.2E-45 T 28-03-2018 IPR007443 Penicillin-binding protein activator LpoA AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Gene3D G3DSA:3.40.50.2300 164 239 0.002 T 28-03-2018 AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Gene3D G3DSA:3.40.50.2300 255 505 7.2E-45 T 28-03-2018 AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Gene3D G3DSA:3.40.50.2300 525 670 3.1E-15 T 28-03-2018 AM348_RS08220 dfab550cbf19ed80692671dfcee08782 683 Gene3D G3DSA:1.25.40.10 19 163 6.3E-4 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS13470 777af05deaf6e20b2d8e8affdcc8e888 238 Gene3D G3DSA:1.10.3720.10 2 236 6.1E-35 T 28-03-2018 AM348_RS13470 777af05deaf6e20b2d8e8affdcc8e888 238 SUPERFAMILY SSF161098 8 216 3.4E-37 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13470 777af05deaf6e20b2d8e8affdcc8e888 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 230 4.2E-15 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13470 777af05deaf6e20b2d8e8affdcc8e888 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 82 7.9E-12 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 SUPERFAMILY SSF57825 101 150 3.53E-15 T 28-03-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 96 2.9E-30 T 28-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 Gene3D G3DSA:3.30.70.140 5 97 2.3E-34 T 28-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 SUPERFAMILY SSF54893 2 100 4.97E-35 T 28-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 1.0E-38 T 28-03-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 152 4.4E-71 T 28-03-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 102 147 3.6E-18 T 28-03-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 Gene3D G3DSA:2.30.30.20 102 150 1.6E-18 T 28-03-2018 AM348_RS02440 2c11321bbce6e8d2aad3d836ce4b6450 153 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.73 T 28-03-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 AM348_RS10120 92f2bb573173479ad7507841446716c8 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 28-03-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM348_RS10120 92f2bb573173479ad7507841446716c8 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 2.7E-71 T 28-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM348_RS10120 92f2bb573173479ad7507841446716c8 159 Gene3D G3DSA:3.30.1330.50 1 158 1.2E-72 T 28-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM348_RS10120 92f2bb573173479ad7507841446716c8 159 SUPERFAMILY SSF69765 1 156 4.71E-66 T 28-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM348_RS10120 92f2bb573173479ad7507841446716c8 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.814 T 28-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM348_RS10120 92f2bb573173479ad7507841446716c8 159 Pfam PF02542 YgbB family 1 154 3.3E-66 T 28-03-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 1.5E-213 T 28-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.332 T 28-03-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 1.4E-23 T 28-03-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 SUPERFAMILY SSF48557 3 456 3.3E-141 T 28-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 Gene3D G3DSA:1.10.275.10 2 107 1.1E-32 T 28-03-2018 IPR024083 Fumarase/histidase, N-terminal AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 Gene3D G3DSA:1.10.40.30 376 433 5.5E-26 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.7E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.7E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.7E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.7E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 Gene3D G3DSA:1.20.200.10 108 375 1.8E-94 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 Pfam PF00206 Lyase 6 301 1.0E-98 T 28-03-2018 IPR022761 Fumarate lyase, N-terminal AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 3.4E-68 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 3.4E-68 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 3.4E-68 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 3.4E-68 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 3.4E-68 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 3.4E-68 T 28-03-2018 AM348_RS04120 580337309b63b9ab8408e37f8acf43b4 456 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS09365 7cb2d405918df50c7c27ff40b38d302c 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 28-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM348_RS09365 7cb2d405918df50c7c27ff40b38d302c 261 SUPERFAMILY SSF52096 1 260 2.11E-61 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS09365 7cb2d405918df50c7c27ff40b38d302c 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 259 2.6E-48 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS09365 7cb2d405918df50c7c27ff40b38d302c 261 Gene3D G3DSA:1.10.12.10 217 261 1.3E-14 T 28-03-2018 IPR014748 Crontonase, C-terminal AM348_RS09365 7cb2d405918df50c7c27ff40b38d302c 261 Gene3D G3DSA:3.90.226.10 5 216 1.2E-46 T 28-03-2018 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 SUPERFAMILY SSF48019 243 366 8.5E-36 T 28-03-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Pfam PF13177 DNA polymerase III, delta subunit 20 178 4.7E-42 T 28-03-2018 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 3.0E-133 T 28-03-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Gene3D G3DSA:1.10.8.60 167 242 8.2E-21 T 28-03-2018 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.8E-5 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.8E-5 T 28-03-2018 IPR001270 ClpA/B family GO:0005524 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 499 639 4.9E-59 T 28-03-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 416 497 2.0E-20 T 28-03-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Gene3D G3DSA:3.40.50.300 1 166 1.4E-39 T 28-03-2018 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 SUPERFAMILY SSF52540 35 221 6.44E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 361 6.2E-32 T 28-03-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 SMART SM00382 37 178 1.4E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22980 d2ae837700d5ad811647f6c5aac741c1 642 Gene3D G3DSA:1.20.272.10 243 363 1.7E-14 T 28-03-2018 AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 Gene3D G3DSA:2.40.50.140 356 418 2.0E-22 T 28-03-2018 AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 SUPERFAMILY SSF56601 430 618 2.08E-108 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 SUPERFAMILY SSF56601 219 241 2.08E-108 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 SUPERFAMILY SSF56601 680 840 2.08E-108 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 SUPERFAMILY SSF56601 270 321 2.08E-108 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 Pfam PF00912 Transglycosylase 63 237 5.8E-65 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 73 766 2.8E-172 T 28-03-2018 AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 Pfam PF17092 Penicillin-binding protein OB-like domain 324 433 4.4E-31 T 28-03-2018 IPR031376 Penicillin-binding protein, OB-like domain AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 Pfam PF00905 Penicillin binding protein transpeptidase domain 437 614 2.0E-24 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 SUPERFAMILY SSF53955 51 264 1.52E-80 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 Gene3D G3DSA:3.40.710.10 419 807 1.3E-91 T 28-03-2018 AM348_RS07050 2cfbb620407835c3d37c75ab027892bc 858 Gene3D G3DSA:1.10.3810.10 55 254 5.0E-84 T 28-03-2018 IPR001264 Glycosyl transferase, family 51 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 Gene3D G3DSA:3.20.20.60 250 573 3.4E-103 T 28-03-2018 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 SUPERFAMILY SSF52009 125 245 1.01E-36 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 Gene3D G3DSA:1.10.274.10 24 145 3.9E-36 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 Gene3D G3DSA:3.50.30.10 146 245 4.0E-26 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 28-03-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 2.2E-22 T 28-03-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 SUPERFAMILY SSF51621 249 549 3.14E-110 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 6.3E-30 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 SUPERFAMILY SSF47831 23 143 4.84E-34 T 28-03-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 28-03-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 PIRSF PIRSF000732 1 574 2.9E-218 T 28-03-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 541 1.2E-126 T 28-03-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 3.2E-31 T 28-03-2018 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 3.2E-31 T 28-03-2018 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 3.2E-31 T 28-03-2018 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 3.2E-31 T 28-03-2018 AM348_RS12005 0097eb957c71e7472a93e07f4a9b7825 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 1.4E-270 T 28-03-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 AM348_RS17830 043942e215c0d7eff2cc2001171db396 108 SUPERFAMILY SSF103481 7 105 7.06E-7 T 28-03-2018 AM348_RS17830 043942e215c0d7eff2cc2001171db396 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 22.572 T 28-03-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AM348_RS17830 043942e215c0d7eff2cc2001171db396 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 107 1.1E-44 T 28-03-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 AM348_RS00875 6c08b16c0a0f40cc7dec52a9470c27af 828 Pfam PF13954 PapC N-terminal domain 33 180 2.7E-27 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS00875 6c08b16c0a0f40cc7dec52a9470c27af 828 Pfam PF00577 Outer membrane usher protein 197 743 6.5E-186 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS00875 6c08b16c0a0f40cc7dec52a9470c27af 828 Pfam PF13953 PapC C-terminal domain 752 813 1.7E-13 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS00875 6c08b16c0a0f40cc7dec52a9470c27af 828 SUPERFAMILY SSF141729 58 172 5.62E-22 T 28-03-2018 AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 Gene3D G3DSA:3.40.50.620 192 514 3.3E-91 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 2.1E-41 T 28-03-2018 IPR017932 Glutamine amidotransferase type 2 domain AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 373 1.2E-125 T 28-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 SUPERFAMILY SSF56235 1 196 1.03E-56 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 Gene3D G3DSA:3.60.20.10 2 191 1.6E-48 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 Pfam PF00733 Asparagine synthase 211 366 8.0E-60 T 28-03-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 PIRSF PIRSF001589 362 515 5.2E-29 T 28-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 PIRSF PIRSF001589 1 365 9.0E-110 T 28-03-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 AM348_RS21975 a4b8b0332532dadf3ff8a0cb2d903554 554 SUPERFAMILY SSF52402 210 479 4.44E-76 T 28-03-2018 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 28-03-2018 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Gene3D G3DSA:1.10.150.20 245 328 7.6E-29 T 28-03-2018 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 SUPERFAMILY SSF56553 53 178 2.96E-41 T 28-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 28-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.607 T 28-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 SUPERFAMILY SSF55257 179 231 1.57E-30 T 28-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 SUPERFAMILY SSF55257 6 53 1.57E-30 T 28-03-2018 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 2.3E-23 T 28-03-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 7.7E-113 T 28-03-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 28-03-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 SMART SM00662 23 234 3.3E-105 T 28-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 28-03-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Gene3D G3DSA:3.30.1360.10 119 231 2.8E-28 T 28-03-2018 AM348_RS07465 f0b9c81acb8b28de1c7f6aae6eb55c2c 329 Gene3D G3DSA:3.30.1360.10 4 89 3.2E-19 T 28-03-2018 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 Gene3D G3DSA:3.40.630.10 5 483 5.5E-51 T 28-03-2018 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PIRSF PIRSF016599 1 485 1.4E-212 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 SUPERFAMILY SSF53187 10 182 5.19E-65 T 28-03-2018 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 SUPERFAMILY SSF53187 397 481 5.19E-65 T 28-03-2018 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 2.8E-103 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 Pfam PF01546 Peptidase family M20/M25/M40 73 480 1.1E-19 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 6.9E-183 T 28-03-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 AM348_RS00430 76960989e2ebf48378f06726a073601c 485 Pfam PF07687 Peptidase dimerisation domain 202 293 1.2E-7 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS00430 76960989e2ebf48378f06726a073601c 485 SUPERFAMILY SSF55031 243 382 7.33E-5 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PIRSF PIRSF001415 1 323 4.8E-148 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 121 135 2.2E-54 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 151 170 2.2E-54 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 265 280 2.2E-54 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 240 256 2.2E-54 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 295 314 2.2E-54 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 189 208 2.2E-54 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 240 252 - T 28-03-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 SUPERFAMILY SSF51569 4 319 2.64E-129 T 28-03-2018 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 319 3.3E-135 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 Gene3D G3DSA:3.20.20.70 1 321 8.1E-138 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS23580 d8a79dd5ecee85f435c3c4b0f9c09666 324 SMART SM01004 3 321 6.2E-209 T 28-03-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 AM348_RS04325 19abc09500e5b478e03ccce663b5fd51 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 3.5E-19 T 28-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM348_RS04325 19abc09500e5b478e03ccce663b5fd51 248 Gene3D G3DSA:3.40.50.80 97 248 2.3E-25 T 28-03-2018 AM348_RS04325 19abc09500e5b478e03ccce663b5fd51 248 Gene3D G3DSA:2.40.30.10 1 96 3.4E-19 T 28-03-2018 AM348_RS04325 19abc09500e5b478e03ccce663b5fd51 248 Pfam PF00970 Oxidoreductase FAD-binding domain 18 90 1.2E-7 T 28-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM348_RS04325 19abc09500e5b478e03ccce663b5fd51 248 SUPERFAMILY SSF52343 103 248 2.23E-38 T 28-03-2018 AM348_RS04325 19abc09500e5b478e03ccce663b5fd51 248 SUPERFAMILY SSF63380 3 100 3.58E-26 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 Pfam PF08447 PAS fold 31 113 4.2E-16 T 28-03-2018 IPR013655 PAS fold-3 GO:0005515 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 SMART SM00283 259 506 2.0E-86 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 SMART SM00086 80 121 8.9E-6 T 28-03-2018 IPR001610 PAC motif AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 474 7.4E-47 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 2.1E-41 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 2.1E-41 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 280 309 2.1E-41 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 2.1E-41 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 SUPERFAMILY SSF55785 21 114 1.48E-24 T 28-03-2018 IPR000014 PAS domain AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 Gene3D G3DSA:1.10.287.950 315 506 7.3E-42 T 28-03-2018 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 Gene3D G3DSA:1.10.287.950 207 314 1.5E-6 T 28-03-2018 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 114 2.8E-11 T 28-03-2018 IPR000014 PAS domain AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 SUPERFAMILY SSF58104 232 505 1.44E-62 T 28-03-2018 AM348_RS08510 9d5c716705bfeb63e98a44e552807d5b 506 Gene3D G3DSA:3.40.50.10600 8 129 1.0E-26 T 28-03-2018 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 25 73 9.6E-7 T 28-03-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 SUPERFAMILY SSF102114 52 316 7.72E-67 T 28-03-2018 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 Pfam PF04055 Radical SAM superfamily 91 251 8.5E-14 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 Gene3D G3DSA:3.20.20.70 28 310 1.8E-26 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 PIRSF PIRSF005963 2 320 1.2E-131 T 28-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 156.21 T 28-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 1.3E-161 T 28-03-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22145 df95268f6db1d3f0c6c6755acf0aa735 321 SMART SM00729 84 293 1.9E-15 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 15 321 8.7E-50 T 28-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 1.2E-133 T 28-03-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 Gene3D G3DSA:3.30.930.10 8 324 2.7E-70 T 28-03-2018 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 58.095 T 28-03-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 SUPERFAMILY SSF55681 12 320 1.35E-85 T 28-03-2018 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 2.5E-6 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS02960 f62f30a4a3e8f13e749bd926fe981b54 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 2.5E-6 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS20160 0507093ca736999b5842205eb67fe032 502 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 28-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS20160 0507093ca736999b5842205eb67fe032 502 Pfam PF00474 Sodium:solute symporter family 35 437 1.9E-146 T 28-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS20160 0507093ca736999b5842205eb67fe032 502 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 28-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS20160 0507093ca736999b5842205eb67fe032 502 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 490 2.8E-233 T 28-03-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 AM348_RS20160 0507093ca736999b5842205eb67fe032 502 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 3.2E-133 T 28-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 Gene3D G3DSA:1.10.40.50 285 353 8.8E-22 T 28-03-2018 AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 Pfam PF03193 RsgA GTPase 108 284 1.0E-56 T 28-03-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 Gene3D G3DSA:3.40.50.300 122 283 2.4E-23 T 28-03-2018 AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 Gene3D G3DSA:2.40.50.140 43 110 1.9E-19 T 28-03-2018 AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 81 342 1.2E-99 T 28-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 SUPERFAMILY SSF52540 122 348 2.86E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02940 fe9de41c94901317ebb187e46321b2f7 358 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 48 348 37.697 T 28-03-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 AM348_RS17640 ceba01e142a2d72f2305bd744f947ad6 385 Pfam PF01103 Surface antigen 198 286 9.2E-9 T 28-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM348_RS13465 f43c4795f744b44ef45533d87ad80127 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 4.5E-18 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS13465 f43c4795f744b44ef45533d87ad80127 222 Gene3D G3DSA:1.10.3720.10 2 221 2.5E-28 T 28-03-2018 AM348_RS13465 f43c4795f744b44ef45533d87ad80127 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 214 3.3E-12 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13465 f43c4795f744b44ef45533d87ad80127 222 SUPERFAMILY SSF161098 6 200 2.88E-28 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17400 c09ffc1ae05a249293206b9e45cc4130 94 Pfam PF01381 Helix-turn-helix 13 65 8.4E-10 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17400 c09ffc1ae05a249293206b9e45cc4130 94 SMART SM00530 12 67 6.6E-8 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17400 c09ffc1ae05a249293206b9e45cc4130 94 SUPERFAMILY SSF47413 9 86 4.5E-24 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS17400 c09ffc1ae05a249293206b9e45cc4130 94 Gene3D G3DSA:1.10.260.40 1 82 1.4E-14 T 28-03-2018 AM348_RS17400 c09ffc1ae05a249293206b9e45cc4130 94 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 3 81 1.4E-27 T 28-03-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 Gene3D G3DSA:3.40.50.720 76 197 5.6E-28 T 28-03-2018 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 Gene3D G3DSA:3.40.50.720 1 75 1.4E-6 T 28-03-2018 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 9.8E-18 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 9.8E-18 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 9.8E-18 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 9.8E-18 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 370 2.5E-70 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 1.5E-26 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 SUPERFAMILY SSF48179 204 375 1.26E-45 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 41.676 T 28-03-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 Gene3D G3DSA:1.10.1040.10 207 381 8.5E-49 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 28-03-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS06050 90a4722df3d46d138a6592dc921397b0 382 SUPERFAMILY SSF51735 1 203 1.41E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 Gene3D G3DSA:1.10.443.10 112 292 9.0E-51 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 298 1.3E-119 T 28-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 298 65.867 T 28-03-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 SUPERFAMILY SSF56349 106 296 8.83E-60 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 7.9E-24 T 28-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 Gene3D G3DSA:1.10.150.130 5 111 2.0E-20 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 298 58.827 T 28-03-2018 IPR023009 Tyrosine recombinase XerC/XerD AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 SUPERFAMILY SSF47823 4 99 2.75E-35 T 28-03-2018 IPR010998 Integrase, Lambda-type, N-terminal AM348_RS09505 dd93669fbb04b4a8893e8fbb0366e993 298 Pfam PF00589 Phage integrase family 113 284 3.7E-56 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 28-03-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 612 37.458 T 28-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 Gene3D G3DSA:3.40.50.300 128 331 4.4E-63 T 28-03-2018 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 SUPERFAMILY SSF140990 402 602 3.4E-72 T 28-03-2018 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 593 3.2E-247 T 28-03-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 Pfam PF01434 Peptidase family M41 382 591 6.4E-82 T 28-03-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 SUPERFAMILY SSF52540 141 391 6.57E-73 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 Pfam PF06480 FtsH Extracellular 5 93 2.6E-17 T 28-03-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 6.4E-46 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 SMART SM00382 184 323 1.9E-26 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS08065 aefeaf7db2e72f1aac6b23cd47afd41a 644 Gene3D G3DSA:1.10.8.60 332 411 2.0E-25 T 28-03-2018 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 28-03-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 SUPERFAMILY SSF52935 323 469 1.7E-36 T 28-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 3.3E-76 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 Gene3D G3DSA:3.40.1380.20 322 470 2.0E-45 T 28-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 Gene3D G3DSA:3.20.20.60 167 321 9.7E-63 T 28-03-2018 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 SUPERFAMILY SSF51621 1 74 3.84E-100 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 SUPERFAMILY SSF51621 156 339 3.84E-100 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 Gene3D G3DSA:3.20.20.60 1 79 2.6E-18 T 28-03-2018 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 8.3E-30 T 28-03-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 1.4E-151 T 28-03-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 Gene3D G3DSA:2.40.33.10 80 166 6.9E-32 T 28-03-2018 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 1.0E-190 T 28-03-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 AM348_RS18630 e5b06e36e5e7018c97e9528bbf90b622 470 SUPERFAMILY SSF50800 70 166 1.05E-29 T 28-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM348_RS21900 20a20c03b47677540c8689cb0c7160d4 148 SUPERFAMILY SSF46785 6 134 2.3E-45 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21900 20a20c03b47677540c8689cb0c7160d4 148 Gene3D G3DSA:1.10.10.10 4 88 1.3E-28 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21900 20a20c03b47677540c8689cb0c7160d4 148 Pfam PF01475 Ferric uptake regulator family 10 130 1.5E-48 T 28-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 Gene3D G3DSA:3.20.20.210 1 354 1.7E-109 T 28-03-2018 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 7.8E-142 T 28-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 28-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 6.6E-136 T 28-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 SUPERFAMILY SSF51726 1 352 7.85E-122 T 28-03-2018 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.407 T 28-03-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM348_RS03910 3b825f2384678f1c717d7e84084dab28 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 28-03-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 7.7E-21 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 SMART SM00862 152 228 4.5E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 Gene3D G3DSA:1.10.10.10 121 232 8.3E-27 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 Pfam PF00072 Response regulator receiver domain 4 112 3.8E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 SMART SM00448 2 111 1.2E-45 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 Gene3D G3DSA:3.40.50.2300 2 120 1.9E-38 T 28-03-2018 AM348_RS04380 08098fa98bf8fc09834ce88e85b2a770 232 SUPERFAMILY SSF52172 2 188 1.35E-41 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Pfam PF00989 PAS fold 222 323 3.9E-12 T 28-03-2018 IPR013767 PAS fold GO:0006355 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 SUPERFAMILY SSF103190 46 179 4.32E-38 T 28-03-2018 IPR029151 Periplasmic sensor domain-like AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 SMART SM00387 430 538 8.3E-25 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 332 384 1.8E-10 T 28-03-2018 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Pfam PF17203 Single cache domain 3 47 178 8.8E-22 T 28-03-2018 IPR033463 Single cache domain 3 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Gene3D G3DSA:3.30.450.20 40 181 9.9E-26 T 28-03-2018 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 435 535 3.5E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Gene3D G3DSA:1.10.287.130 331 386 4.7E-15 T 28-03-2018 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Gene3D G3DSA:3.30.565.10 395 543 1.2E-28 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 Gene3D G3DSA:3.30.450.20 216 330 2.1E-12 T 28-03-2018 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 SUPERFAMILY SSF55785 233 334 8.9E-7 T 28-03-2018 IPR000014 PAS domain AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 516 2.0E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 535 2.0E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 2.0E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 497 2.0E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 SUPERFAMILY SSF55874 433 535 6.16E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03130 7092773fc5870c37eb9fb573255f77a7 543 SUPERFAMILY SSF55890 339 406 4.18E-16 T 28-03-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AM348_RS00195 6e083895bef4feb28b15470dc974e330 85 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 85 29.292 T 28-03-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair AM348_RS00195 6e083895bef4feb28b15470dc974e330 85 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 85 1.0E-40 T 28-03-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 PIRSF PIRSF016049 1 394 8.0E-182 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 3.5E-156 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 396 223.897 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 2.8E-210 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 Gene3D G3DSA:3.20.20.150 174 394 3.4E-44 T 28-03-2018 AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 Gene3D G3DSA:3.20.20.150 1 173 4.5E-64 T 28-03-2018 AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 SUPERFAMILY SSF51658 1 133 1.47E-78 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS13070 8ced40ac9dd6a754d6dd47574ee762a0 396 SUPERFAMILY SSF51658 163 383 1.47E-78 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 PRINTS PR00409 Phthalate dioxygenase reductase family signature 115 134 1.2E-5 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 PRINTS PR00409 Phthalate dioxygenase reductase family signature 55 69 1.2E-5 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 PRINTS PR00409 Phthalate dioxygenase reductase family signature 197 205 1.2E-5 T 28-03-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 SUPERFAMILY SSF63380 9 105 3.87E-21 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 Pfam PF00970 Oxidoreductase FAD-binding domain 36 104 1.5E-7 T 28-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 SUPERFAMILY SSF54292 221 321 1.84E-24 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 Gene3D G3DSA:2.40.30.10 8 106 1.4E-17 T 28-03-2018 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 Gene3D G3DSA:3.10.20.30 206 322 3.4E-21 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 249 315 1.0E-13 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 SUPERFAMILY SSF52343 95 220 1.96E-24 T 28-03-2018 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 Pfam PF00175 Oxidoreductase NAD-binding domain 116 211 2.2E-8 T 28-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM348_RS13540 93bdac0b4cd5148a4063e5b3de8e17a0 322 Gene3D G3DSA:3.40.50.80 112 205 1.4E-15 T 28-03-2018 AM348_RS22650 f5a8fb68beb3eabc29e96240bffca0dc 204 SUPERFAMILY SSF89155 10 202 1.7E-36 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS22650 f5a8fb68beb3eabc29e96240bffca0dc 204 Gene3D G3DSA:1.10.3480.10 1 204 3.3E-31 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS22650 f5a8fb68beb3eabc29e96240bffca0dc 204 Pfam PF02613 Nitrate reductase delta subunit 54 176 3.2E-21 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS22650 f5a8fb68beb3eabc29e96240bffca0dc 204 Hamap MF_01150 Chaperone protein TorD [torD]. 4 204 27.75 T 28-03-2018 IPR023069 Chaperone TorD AM348_RS22570 b609150b7396654c1de0bebd8c64ea28 186 Pfam PF04224 Protein of unknown function, DUF417 2 181 2.3E-76 T 28-03-2018 IPR007339 Protein of unknown function DUF417 AM348_RS22570 b609150b7396654c1de0bebd8c64ea28 186 PIRSF PIRSF028065 9 60 1.9E-11 T 28-03-2018 IPR016865 Inner membrane protein RclC AM348_RS22570 b609150b7396654c1de0bebd8c64ea28 186 PIRSF PIRSF028065 84 181 3.9E-12 T 28-03-2018 IPR016865 Inner membrane protein RclC AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 SUPERFAMILY SSF102114 23 217 2.55E-24 T 28-03-2018 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 Gene3D G3DSA:3.80.30.10 68 246 1.5E-40 T 28-03-2018 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 Pfam PF04055 Radical SAM superfamily 24 178 1.1E-31 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 1.5E-107 T 28-03-2018 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 Pfam PF13353 4Fe-4S single cluster domain 16 141 3.4E-18 T 28-03-2018 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 28-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 PIRSF PIRSF000371 1 47 3.9E-10 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS20790 69849c3ef39d6d929fcea910b866c6b6 246 PIRSF PIRSF000371 44 246 2.8E-48 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 SUPERFAMILY SSF47384 219 301 1.61E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Gene3D G3DSA:1.10.287.130 226 298 6.1E-12 T 28-03-2018 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 301 7.3E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 443 4.7E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Gene3D G3DSA:1.20.5.1040 129 183 1.0E-12 T 28-03-2018 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Gene3D G3DSA:1.20.5.1040 7 58 8.2E-11 T 28-03-2018 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 SMART SM00388 236 302 1.5E-14 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 SMART SM00387 348 449 1.9E-21 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 5.2E-6 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 5.2E-6 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Pfam PF08521 Two-component sensor kinase N-terminal 23 158 1.0E-7 T 28-03-2018 IPR013727 Two-component sensor kinase, N-terminal AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 Gene3D G3DSA:3.30.565.10 306 449 7.6E-30 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS08840 855de57df9d0ec0b7e41f4e22cdc337b 449 SUPERFAMILY SSF55874 291 447 2.1E-30 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 Gene3D G3DSA:3.40.50.300 1 237 2.7E-29 T 28-03-2018 AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 Pfam PF13558 Putative exonuclease SbcCD, C subunit 930 1001 4.8E-15 T 28-03-2018 AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 Pfam PF13476 AAA domain 5 230 1.7E-24 T 28-03-2018 AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 SUPERFAMILY SSF52540 827 1034 7.02E-41 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 SUPERFAMILY SSF52540 1 223 7.02E-41 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 Gene3D G3DSA:1.20.120.330 407 583 6.7E-6 T 28-03-2018 AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 TIGRFAM TIGR00618 sbcc: exonuclease SbcC 1 1039 0.0 T 28-03-2018 IPR004592 Nuclease SbcC, gammaproteobacteria type AM348_RS23445 214e0a37d8bb2fdb21165c9bb7e05ca5 1047 Gene3D G3DSA:3.40.50.300 584 1044 3.1E-15 T 28-03-2018 AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 Gene3D G3DSA:3.30.70.20 49 106 4.0E-17 T 28-03-2018 AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 Pfam PF13247 4Fe-4S dicluster domain 84 181 3.0E-24 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 222 5.6E-124 T 28-03-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 Pfam PF00037 4Fe-4S binding domain 40 56 1.7E-4 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 Gene3D G3DSA:3.30.70.20 145 218 3.6E-23 T 28-03-2018 AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 Gene3D G3DSA:3.30.70.20 19 48 2.6E-4 T 28-03-2018 AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 125 136 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 SUPERFAMILY SSF54862 36 215 2.51E-63 T 28-03-2018 AM348_RS03405 f617ca9df29440a0d3024a416c15abac 223 Gene3D G3DSA:3.30.70.20 107 144 1.3E-18 T 28-03-2018 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 SUPERFAMILY SSF52374 6 286 3.26E-88 T 28-03-2018 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 255 1.2E-46 T 28-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 270 5.6E-112 T 28-03-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 Gene3D G3DSA:3.40.50.620 1 142 2.4E-32 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS00915 0066940764720e0ef8a713458de2d857 298 Gene3D G3DSA:3.40.50.620 155 298 1.4E-24 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS00915 0066940764720e0ef8a713458de2d857 298 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 290 41.126 T 28-03-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 7.0E-13 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 7.0E-13 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 7.0E-13 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 7.0E-13 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS00915 0066940764720e0ef8a713458de2d857 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 7.0E-13 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS22220 2ca1cbed296106a8ba39757646ab1054 487 PIRSF PIRSF002457 1 487 4.7E-161 T 28-03-2018 IPR030676 Citrate carrier CitT-related AM348_RS22220 2ca1cbed296106a8ba39757646ab1054 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 480 1.3E-169 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS22220 2ca1cbed296106a8ba39757646ab1054 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 6 486 1.4E-183 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS00765 ab4e47cfd8abdce803dc9056adcc144f 241 Gene3D G3DSA:3.40.1160.10 2 241 3.0E-43 T 28-03-2018 AM348_RS00765 ab4e47cfd8abdce803dc9056adcc144f 241 SUPERFAMILY SSF53633 7 240 9.03E-72 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS00765 ab4e47cfd8abdce803dc9056adcc144f 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.352 T 28-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AM348_RS00765 ab4e47cfd8abdce803dc9056adcc144f 241 PIRSF PIRSF005650 4 241 1.2E-89 T 28-03-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 AM348_RS00765 ab4e47cfd8abdce803dc9056adcc144f 241 Pfam PF00696 Amino acid kinase family 10 219 2.4E-27 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS00765 ab4e47cfd8abdce803dc9056adcc144f 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.2E-103 T 28-03-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 AM348_RS11625 9fd8ff0ced84c6f89d7729c2a2828d4f 71 Pfam PF07191 zinc-ribbons 4 68 2.5E-28 T 28-03-2018 IPR010807 Protein of unknown function DUF1407 AM348_RS11625 9fd8ff0ced84c6f89d7729c2a2828d4f 71 Gene3D G3DSA:2.20.25.10 32 67 0.11 T 28-03-2018 AM348_RS11625 9fd8ff0ced84c6f89d7729c2a2828d4f 71 Gene3D G3DSA:2.20.25.10 3 31 0.12 T 28-03-2018 AM348_RS11625 9fd8ff0ced84c6f89d7729c2a2828d4f 71 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 1 69 1.0E-23 T 28-03-2018 IPR010807 Protein of unknown function DUF1407 AM348_RS11625 9fd8ff0ced84c6f89d7729c2a2828d4f 71 SUPERFAMILY SSF161187 1 69 1.27E-28 T 28-03-2018 IPR029037 YfgJ-like AM348_RS16670 0c6261663a32c09016263b085f4e30f8 187 SMART SM00347 23 123 2.3E-5 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS16670 0c6261663a32c09016263b085f4e30f8 187 Pfam PF12802 MarR family 29 89 1.9E-10 T 28-03-2018 AM348_RS16670 0c6261663a32c09016263b085f4e30f8 187 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 28-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM348_RS16670 0c6261663a32c09016263b085f4e30f8 187 Gene3D G3DSA:1.10.10.10 69 172 7.2E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16670 0c6261663a32c09016263b085f4e30f8 187 SUPERFAMILY SSF46785 3 135 1.07E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16670 0c6261663a32c09016263b085f4e30f8 187 Gene3D G3DSA:1.10.10.10 3 68 1.0E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22990 37a10bec093148c8d054513760030f9f 183 Pfam PF00156 Phosphoribosyl transferase domain 31 156 1.9E-15 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS22990 37a10bec093148c8d054513760030f9f 183 SUPERFAMILY SSF53271 13 180 3.27E-52 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS22990 37a10bec093148c8d054513760030f9f 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 11 180 38.289 T 28-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AM348_RS22990 37a10bec093148c8d054513760030f9f 183 Gene3D G3DSA:3.40.50.2020 4 180 2.8E-42 T 28-03-2018 AM348_RS22990 37a10bec093148c8d054513760030f9f 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 11 178 2.5E-73 T 28-03-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 AM348_RS11835 91e4c908c166c1efa54911fd4c647a4e 159 PIRSF PIRSF036409 1 148 8.7E-55 T 28-03-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 AM348_RS11835 91e4c908c166c1efa54911fd4c647a4e 159 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 1 143 2.4E-29 T 28-03-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 AM348_RS11835 91e4c908c166c1efa54911fd4c647a4e 159 Gene3D G3DSA:3.40.50.300 2 158 4.1E-16 T 28-03-2018 AM348_RS11835 91e4c908c166c1efa54911fd4c647a4e 159 SUPERFAMILY SSF52540 3 147 1.98E-16 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11835 91e4c908c166c1efa54911fd4c647a4e 159 TIGRFAM TIGR02528 EutP: ethanolamine utilization protein, EutP 2 143 2.3E-53 T 28-03-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 AM348_RS11865 1d7a789bdb76f3235ec294285cb67ebf 467 Pfam PF00171 Aldehyde dehydrogenase family 34 421 1.6E-31 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS11865 1d7a789bdb76f3235ec294285cb67ebf 467 Gene3D G3DSA:3.40.309.10 253 425 3.2E-28 T 28-03-2018 AM348_RS11865 1d7a789bdb76f3235ec294285cb67ebf 467 SUPERFAMILY SSF53720 35 458 5.89E-64 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS11865 1d7a789bdb76f3235ec294285cb67ebf 467 PIRSF PIRSF036410 1 467 4.3E-213 T 28-03-2018 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related AM348_RS11865 1d7a789bdb76f3235ec294285cb67ebf 467 Gene3D G3DSA:3.40.605.10 7 252 1.1E-30 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 28-03-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 8.4E-235 T 28-03-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 SUPERFAMILY SSF47648 3 70 1.3E-21 T 28-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 47.042 T 28-03-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 PIRSF PIRSF000478 1 439 5.9E-152 T 28-03-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 350 423 6.8E-25 T 28-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Gene3D G3DSA:3.40.1030.10 69 342 8.1E-82 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 4.0E-52 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 9.2E-19 T 28-03-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 SMART SM00941 350 424 1.6E-29 T 28-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Gene3D G3DSA:1.20.970.10 3 67 2.8E-21 T 28-03-2018 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 SUPERFAMILY SSF52418 75 334 6.15E-88 T 28-03-2018 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 5.2E-168 T 28-03-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 SUPERFAMILY SSF54680 337 439 4.19E-32 T 28-03-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01790 163ab39c977af2639ed67cb7ed5603d2 440 Gene3D G3DSA:3.90.1170.30 343 429 2.2E-29 T 28-03-2018 AM348_RS01155 09789d0f182ce5bdcc80cabc83f751a0 247 Hamap MF_01092 Cell division protein ZapD [zapD]. 4 247 33.105 T 28-03-2018 IPR009777 Cell division protein ZapD AM348_RS01155 09789d0f182ce5bdcc80cabc83f751a0 247 SUPERFAMILY SSF160950 3 247 1.44E-92 T 28-03-2018 IPR009777 Cell division protein ZapD AM348_RS01155 09789d0f182ce5bdcc80cabc83f751a0 247 Gene3D G3DSA:1.10.3900.10 13 174 3.3E-63 T 28-03-2018 AM348_RS01155 09789d0f182ce5bdcc80cabc83f751a0 247 Gene3D G3DSA:2.60.440.10 175 247 1.2E-27 T 28-03-2018 IPR027462 Z ring-associated protein D, C-terminal domain AM348_RS01155 09789d0f182ce5bdcc80cabc83f751a0 247 Pfam PF07072 Cell division protein 19 225 4.9E-78 T 28-03-2018 IPR009777 Cell division protein ZapD AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 7.1E-75 T 28-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Gene3D G3DSA:3.40.50.300 1 142 1.8E-24 T 28-03-2018 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Gene3D G3DSA:3.40.50.300 143 275 2.6E-28 T 28-03-2018 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Gene3D G3DSA:3.40.50.300 276 376 5.3E-21 T 28-03-2018 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 8.1E-71 T 28-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 41.006 T 28-03-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 Gene3D G3DSA:1.10.486.10 377 552 1.2E-37 T 28-03-2018 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 667 0.0 T 28-03-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 AM348_RS05070 1d542f3abeecdcd3831038498229f6c6 673 SUPERFAMILY SSF52540 2 636 1.21E-163 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03255 7913662d5f38b4e02fb88ee23bee99ce 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 258 1.5E-22 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03255 7913662d5f38b4e02fb88ee23bee99ce 259 Gene3D G3DSA:1.10.3720.10 12 259 7.0E-32 T 28-03-2018 AM348_RS03255 7913662d5f38b4e02fb88ee23bee99ce 259 SUPERFAMILY SSF161098 62 253 5.63E-35 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03255 7913662d5f38b4e02fb88ee23bee99ce 259 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 258 2.5E-93 T 28-03-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 AM348_RS13210 8aa089335c25f22ca4fa1353f27e9bd3 332 SUPERFAMILY SSF53822 25 329 7.46E-84 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS13210 8aa089335c25f22ca4fa1353f27e9bd3 332 Pfam PF13407 Periplasmic binding protein domain 28 299 7.2E-64 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS13210 8aa089335c25f22ca4fa1353f27e9bd3 332 Gene3D G3DSA:3.40.50.2300 19 136 9.2E-16 T 28-03-2018 AM348_RS13210 8aa089335c25f22ca4fa1353f27e9bd3 332 Gene3D G3DSA:3.40.50.2300 137 332 3.1E-41 T 28-03-2018 AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 Gene3D G3DSA:1.10.1740.10 2 76 5.9E-14 T 28-03-2018 AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 Gene3D G3DSA:1.10.10.10 77 165 3.0E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 SUPERFAMILY SSF88659 88 164 1.68E-14 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 SUPERFAMILY SSF88946 13 101 4.32E-13 T 28-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 Pfam PF04542 Sigma-70 region 2 16 81 7.8E-12 T 28-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 Pfam PF08281 Sigma-70, region 4 112 164 7.5E-16 T 28-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS19665 c1894b56ab8ed3071a36d82c70d042c5 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 164 9.9E-22 T 28-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11110 a85837583bd936f043adb94bfb93fc68 356 Pfam PF00793 DAHP synthetase I family 33 340 9.9E-109 T 28-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS11110 a85837583bd936f043adb94bfb93fc68 356 PIRSF PIRSF001361 1 354 4.1E-165 T 28-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM348_RS11110 a85837583bd936f043adb94bfb93fc68 356 SUPERFAMILY SSF51569 8 345 7.05E-136 T 28-03-2018 AM348_RS11110 a85837583bd936f043adb94bfb93fc68 356 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 350 5.7E-175 T 28-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM348_RS11110 a85837583bd936f043adb94bfb93fc68 356 Gene3D G3DSA:3.20.20.70 9 355 2.2E-131 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS17100 21c053fc1546c32b6378cb1891e6e9a2 467 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 5.6E-166 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS17100 21c053fc1546c32b6378cb1891e6e9a2 467 PIRSF PIRSF006446 2 456 9.8E-224 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS13260 bcdd83c881ea1f0bfd6162a451935222 345 SUPERFAMILY SSF51182 11 343 2.38E-116 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS13260 bcdd83c881ea1f0bfd6162a451935222 345 Gene3D G3DSA:2.60.120.10 54 345 1.3E-39 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS13260 bcdd83c881ea1f0bfd6162a451935222 345 TIGRFAM TIGR02272 gentisate_1_2: gentisate 1,2-dioxygenase 11 344 1.6E-182 T 28-03-2018 IPR011960 Gentisate 1,2-dioxygenase AM348_RS13260 bcdd83c881ea1f0bfd6162a451935222 345 Pfam PF07883 Cupin domain 94 162 8.3E-25 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS15095 2eb6b62ee859cced7451fb8f44a96f7d 247 PIRSF PIRSF006325 1 243 2.8E-134 T 28-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 AM348_RS15095 2eb6b62ee859cced7451fb8f44a96f7d 247 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 5.0E-134 T 28-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 AM348_RS15095 2eb6b62ee859cced7451fb8f44a96f7d 247 Gene3D G3DSA:3.40.50.150 18 247 5.2E-41 T 28-03-2018 AM348_RS15095 2eb6b62ee859cced7451fb8f44a96f7d 247 Pfam PF13649 Methyltransferase domain 60 158 6.5E-15 T 28-03-2018 AM348_RS15095 2eb6b62ee859cced7451fb8f44a96f7d 247 SUPERFAMILY SSF53335 20 242 5.47E-40 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS15095 2eb6b62ee859cced7451fb8f44a96f7d 247 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 43.027 T 28-03-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 AM348_RS19935 3472b6ccca09a743e7ea5582d4ce5cc2 219 Pfam PF13144 Chaperone for flagella basal body P-ring formation 30 215 3.8E-39 T 28-03-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AM348_RS19935 3472b6ccca09a743e7ea5582d4ce5cc2 219 SMART SM00858 95 157 2.1E-10 T 28-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM348_RS19935 3472b6ccca09a743e7ea5582d4ce5cc2 219 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 84 217 2.4E-37 T 28-03-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal AM348_RS19935 3472b6ccca09a743e7ea5582d4ce5cc2 219 Gene3D G3DSA:3.90.1210.10 93 158 3.8E-11 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Gene3D G3DSA:1.20.1640.10 822 1031 1.3E-35 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82693 135 182 1.67E-26 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82693 274 330 1.67E-26 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82714 723 810 1.57E-19 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82693 565 669 2.51E-28 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Gene3D G3DSA:3.30.70.1430 567 668 1.6E-18 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82693 672 722 3.14E-23 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82693 809 857 3.14E-23 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82693 38 132 1.26E-27 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Gene3D G3DSA:3.30.70.1440 672 769 2.4E-20 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Gene3D G3DSA:1.20.1640.10 286 510 7.5E-43 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82866 296 497 3.14E-46 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1033 0.0 T 28-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Gene3D G3DSA:3.30.70.1430 38 140 2.3E-30 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 1.9E-108 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82866 835 1027 9.02E-44 T 28-03-2018 AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 SUPERFAMILY SSF82714 182 272 1.7E-20 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS10910 3b23dfdccfb18bced6a827b73e04d7a6 1038 Gene3D G3DSA:3.30.2090.10 180 275 3.3E-18 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS02150 28e648f86b6bcbc10dc6aac30acdaa64 535 Pfam PF00171 Aldehyde dehydrogenase family 26 470 7.7E-46 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS02150 28e648f86b6bcbc10dc6aac30acdaa64 535 Gene3D G3DSA:3.40.605.10 4 283 1.6E-49 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS02150 28e648f86b6bcbc10dc6aac30acdaa64 535 Gene3D G3DSA:3.40.309.10 284 458 2.6E-22 T 28-03-2018 AM348_RS02150 28e648f86b6bcbc10dc6aac30acdaa64 535 SUPERFAMILY SSF53720 23 523 2.36E-96 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS14520 bffc72beca20183d661154afa72e1b71 250 Gene3D G3DSA:3.40.50.300 1 248 1.8E-79 T 28-03-2018 AM348_RS14520 bffc72beca20183d661154afa72e1b71 250 PIRSF PIRSF039085 1 249 1.5E-111 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS14520 bffc72beca20183d661154afa72e1b71 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS14520 bffc72beca20183d661154afa72e1b71 250 Pfam PF00005 ABC transporter 19 173 5.7E-36 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS14520 bffc72beca20183d661154afa72e1b71 250 SMART SM00382 28 221 1.9E-20 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS14520 bffc72beca20183d661154afa72e1b71 250 SUPERFAMILY SSF52540 4 243 1.77E-78 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18470 7208db1e45dee390524600513ff4c9da 351 SUPERFAMILY SSF53807 24 324 1.02E-54 T 28-03-2018 AM348_RS18470 7208db1e45dee390524600513ff4c9da 351 Gene3D G3DSA:3.40.50.1980 22 180 4.4E-24 T 28-03-2018 AM348_RS18470 7208db1e45dee390524600513ff4c9da 351 Gene3D G3DSA:3.40.50.1980 188 348 2.8E-42 T 28-03-2018 AM348_RS18470 7208db1e45dee390524600513ff4c9da 351 Pfam PF01497 Periplasmic binding protein 43 296 4.0E-30 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS22050 1ef359ab2d69018f1a6b437cd1455481 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 132 1.2E-15 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS22050 1ef359ab2d69018f1a6b437cd1455481 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 238 5.1E-27 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS22050 1ef359ab2d69018f1a6b437cd1455481 246 Gene3D G3DSA:1.10.3720.10 17 239 1.5E-39 T 28-03-2018 AM348_RS22050 1ef359ab2d69018f1a6b437cd1455481 246 SUPERFAMILY SSF161098 24 223 5.63E-38 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13295 cdb26c146459edc0b0105dc407499ffa 189 Pfam PF09335 SNARE associated Golgi protein 23 143 1.6E-16 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 SUPERFAMILY SSF51735 2 150 3.15E-46 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 Gene3D G3DSA:3.40.50.720 1 150 1.7E-52 T 28-03-2018 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 46.808 T 28-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 1.1E-41 T 28-03-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 PIRSF PIRSF006205 1 398 4.0E-158 T 28-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 SUPERFAMILY SSF55347 126 274 4.58E-62 T 28-03-2018 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 396 2.2E-191 T 28-03-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 Gene3D G3DSA:1.10.1740.10 312 396 3.9E-31 T 28-03-2018 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 1.3E-35 T 28-03-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 6.6E-48 T 28-03-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS00750 0ddbee06bb2a53bd9f67bca6d2c41ff4 398 SUPERFAMILY SSF69055 301 393 1.11E-31 T 28-03-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 AM348_RS12805 a0972c4e3d46903eb63aaaf8da564b7c 242 SUPERFAMILY SSF53335 18 224 1.04E-43 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS12805 a0972c4e3d46903eb63aaaf8da564b7c 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 14 240 38.33 T 28-03-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AM348_RS12805 a0972c4e3d46903eb63aaaf8da564b7c 242 Gene3D G3DSA:3.40.50.150 3 240 5.4E-46 T 28-03-2018 AM348_RS12805 a0972c4e3d46903eb63aaaf8da564b7c 242 Pfam PF13489 Methyltransferase domain 57 201 1.9E-24 T 28-03-2018 AM348_RS12805 a0972c4e3d46903eb63aaaf8da564b7c 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 2.2E-91 T 28-03-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 Gene3D G3DSA:3.30.1360.60 451 525 5.3E-26 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 420 511 7.9E-26 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 464 481 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 70 372 1.5E-95 T 28-03-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 8 525 3.3E-257 T 28-03-2018 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 KEGG: 00230+2.7.1.20|KEGG: 00500+2.7.1.208|MetaCyc: PWY-6619 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 Pfam PF00367 phosphotransferase system, EIIB 455 486 5.4E-16 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 Pfam PF02378 Phosphotransferase system, EIIC 19 361 6.2E-87 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS18065 0870cf05f90cb65b942b7eb0b4ecee57 530 SUPERFAMILY SSF55604 454 522 3.27E-20 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 SMART SM00304 212 264 3.4E-5 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 9.8E-57 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 9.8E-57 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 9.8E-57 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 9.8E-57 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 9.8E-57 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 SMART SM00283 265 512 1.1E-90 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 SUPERFAMILY SSF58104 232 520 2.88E-72 T 28-03-2018 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 Gene3D G3DSA:1.10.287.950 87 318 8.6E-20 T 28-03-2018 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 Gene3D G3DSA:1.10.287.950 319 516 4.6E-48 T 28-03-2018 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 Pfam PF02203 Tar ligand binding domain homologue 4 165 8.5E-12 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 290 312 - T 28-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM348_RS08970 79701ec6141be48c651dd4d638ebffb9 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 480 1.5E-51 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS08815 be2a0a4f9cbc5ce99d5af3ace2f3ea06 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 9.0E-24 T 28-03-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 AM348_RS08815 be2a0a4f9cbc5ce99d5af3ace2f3ea06 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 206 6.0E-21 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS08815 be2a0a4f9cbc5ce99d5af3ace2f3ea06 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 41.491 T 28-03-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 AM348_RS08815 be2a0a4f9cbc5ce99d5af3ace2f3ea06 275 SUPERFAMILY SSF56300 16 269 3.38E-61 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS08815 be2a0a4f9cbc5ce99d5af3ace2f3ea06 275 Gene3D G3DSA:3.60.21.10 7 272 1.4E-41 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 Gene3D G3DSA:1.10.40.30 419 468 4.8E-17 T 28-03-2018 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 2.2E-5 T 28-03-2018 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 2.2E-5 T 28-03-2018 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 2.2E-5 T 28-03-2018 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 Gene3D G3DSA:1.10.275.10 3 141 7.0E-53 T 28-03-2018 IPR024083 Fumarase/histidase, N-terminal AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 Pfam PF10415 Fumarase C C-terminus 411 464 2.2E-16 T 28-03-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 Gene3D G3DSA:1.20.200.10 142 418 4.2E-73 T 28-03-2018 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 4.8E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 4.8E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 4.8E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 4.8E-28 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 1.3E-271 T 28-03-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 SUPERFAMILY SSF48557 1 458 7.51E-146 T 28-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS03060 7ef5a0b250bdb01c52cbe169b0a741bd 478 Pfam PF00206 Lyase 13 345 2.5E-114 T 28-03-2018 IPR022761 Fumarate lyase, N-terminal AM348_RS03045 bf2f28338771592655e65e54b8064644 97 SMART SM00883 2 95 1.8E-48 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 Pfam PF00166 Chaperonin 10 Kd subunit 3 95 6.1E-29 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.9E-27 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.9E-27 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.9E-27 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.9E-27 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 Gene3D G3DSA:2.30.33.40 1 96 8.6E-32 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.933 T 28-03-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 AM348_RS03045 bf2f28338771592655e65e54b8064644 97 SUPERFAMILY SSF50129 1 96 1.65E-30 T 28-03-2018 IPR011032 GroES-like AM348_RS03045 bf2f28338771592655e65e54b8064644 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 28-03-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 Gene3D G3DSA:3.40.190.10 24 134 3.0E-17 T 28-03-2018 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 13 332 3.8E-181 T 28-03-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 Pfam PF13531 Bacterial extracellular solute-binding protein 38 286 4.0E-41 T 28-03-2018 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 151 159 - T 28-03-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 Gene3D G3DSA:3.40.190.10 135 335 6.0E-39 T 28-03-2018 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 SUPERFAMILY SSF53850 24 332 8.7E-81 T 28-03-2018 AM348_RS11955 b13ed97ef2e2b883243190d93f9311b1 338 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 53 65 - T 28-03-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site AM348_RS15510 221767f78e076560bc480264da636025 113 Pfam PF09313 Domain of unknown function (DUF1971) 14 94 7.7E-27 T 28-03-2018 IPR015392 Domain of unknown function DUF1971 AM348_RS15510 221767f78e076560bc480264da636025 113 PIRSF PIRSF020632 3 112 2.6E-63 T 28-03-2018 IPR014510 Tellurite resistance predicted, YeaR AM348_RS15510 221767f78e076560bc480264da636025 113 Gene3D G3DSA:2.60.120.10 6 107 2.7E-41 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS15510 221767f78e076560bc480264da636025 113 SUPERFAMILY SSF51197 4 101 9.2E-33 T 28-03-2018 AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 SUPERFAMILY SSF52540 4 325 3.81E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 190 204 - T 28-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 Gene3D G3DSA:3.30.450.90 1 97 3.1E-15 T 28-03-2018 AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 Pfam PF00437 Type II/IV secretion system protein 109 261 7.9E-40 T 28-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 2 326 7.2E-132 T 28-03-2018 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 Gene3D G3DSA:3.40.50.300 115 266 2.2E-23 T 28-03-2018 AM348_RS09240 22d596dd84b9949b3b4eb13fc4f65c5f 326 Gene3D G3DSA:3.40.50.300 267 326 4.5E-8 T 28-03-2018 AM348_RS23260 e06439b88ccc6d169f6e6345cf88259c 163 SUPERFAMILY SSF89963 91 163 1.15E-28 T 28-03-2018 IPR007551 Protein of unknown function DUF520 AM348_RS23260 e06439b88ccc6d169f6e6345cf88259c 163 SUPERFAMILY SSF89963 2 89 8.37E-31 T 28-03-2018 IPR007551 Protein of unknown function DUF520 AM348_RS23260 e06439b88ccc6d169f6e6345cf88259c 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 4.8E-65 T 28-03-2018 IPR007551 Protein of unknown function DUF520 AM348_RS23260 e06439b88ccc6d169f6e6345cf88259c 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 30.285 T 28-03-2018 IPR007551 Protein of unknown function DUF520 AM348_RS23260 e06439b88ccc6d169f6e6345cf88259c 163 Gene3D G3DSA:3.30.70.860 98 162 2.8E-33 T 28-03-2018 IPR035571 UPF0234/UPF0381 domain AM348_RS23260 e06439b88ccc6d169f6e6345cf88259c 163 Gene3D G3DSA:3.30.70.990 10 97 1.4E-30 T 28-03-2018 IPR035570 UPF0234 N-terminal domain AM348_RS11870 9f8c5336ccc4d17bd26c0adaa112415a 279 TIGRFAM TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein 34 267 2.4E-111 T 28-03-2018 IPR013366 Ethanolamine utilisation EutJ AM348_RS11870 9f8c5336ccc4d17bd26c0adaa112415a 279 SUPERFAMILY SSF53067 142 261 4.44E-21 T 28-03-2018 AM348_RS11870 9f8c5336ccc4d17bd26c0adaa112415a 279 Gene3D G3DSA:3.30.420.40 6 144 1.1E-15 T 28-03-2018 AM348_RS11870 9f8c5336ccc4d17bd26c0adaa112415a 279 Gene3D G3DSA:3.30.420.150 145 258 4.7E-14 T 28-03-2018 AM348_RS11870 9f8c5336ccc4d17bd26c0adaa112415a 279 Pfam PF14450 Cell division protein FtsA 142 247 3.0E-9 T 28-03-2018 AM348_RS11870 9f8c5336ccc4d17bd26c0adaa112415a 279 SUPERFAMILY SSF53067 31 132 3.5E-11 T 28-03-2018 AM348_RS00125 6f4e9fae5f691b9958e70de67460cd26 91 SUPERFAMILY SSF159871 2 90 2.49E-21 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS00125 6f4e9fae5f691b9958e70de67460cd26 91 Gene3D G3DSA:3.30.1660.10 21 89 4.9E-16 T 28-03-2018 IPR025543 Dodecin-like AM348_RS00125 6f4e9fae5f691b9958e70de67460cd26 91 Pfam PF07338 Protein of unknown function (DUF1471) 37 89 4.5E-13 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 Pfam PF03466 LysR substrate binding domain 95 301 3.2E-15 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 Gene3D G3DSA:3.40.190.10 92 188 0.0016 T 28-03-2018 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 SUPERFAMILY SSF46785 9 91 8.39E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 Gene3D G3DSA:1.10.10.10 2 91 9.1E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 Gene3D G3DSA:3.40.190.10 189 274 3.8E-7 T 28-03-2018 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 3.8E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 3.8E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 3.8E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 7.8E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18450 b07947bfa5c46d87ee126d81e83e2ed9 311 SUPERFAMILY SSF53850 97 305 2.71E-17 T 28-03-2018 AM348_RS01850 0ce67340a0a9f80536df6fcae6f2ca62 343 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS01850 0ce67340a0a9f80536df6fcae6f2ca62 343 SUPERFAMILY SSF53335 154 316 1.28E-32 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS01850 0ce67340a0a9f80536df6fcae6f2ca62 343 Gene3D G3DSA:3.40.50.150 159 343 3.5E-36 T 28-03-2018 AM348_RS01850 0ce67340a0a9f80536df6fcae6f2ca62 343 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.717 T 28-03-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS01850 0ce67340a0a9f80536df6fcae6f2ca62 343 Pfam PF05175 Methyltransferase small domain 166 333 4.1E-61 T 28-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM348_RS01850 0ce67340a0a9f80536df6fcae6f2ca62 343 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 8.6E-56 T 28-03-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS09965 6cc18c61ee7c7c9415a1cc86dd58cc69 450 Gene3D G3DSA:1.20.1250.20 238 445 2.7E-25 T 28-03-2018 AM348_RS09965 6cc18c61ee7c7c9415a1cc86dd58cc69 450 Gene3D G3DSA:1.20.1250.20 11 217 2.6E-36 T 28-03-2018 AM348_RS09965 6cc18c61ee7c7c9415a1cc86dd58cc69 450 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 27 436 5.6E-161 T 28-03-2018 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS09965 6cc18c61ee7c7c9415a1cc86dd58cc69 450 PIRSF PIRSF002808 2 448 8.7E-44 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS09965 6cc18c61ee7c7c9415a1cc86dd58cc69 450 SUPERFAMILY SSF103473 12 444 7.85E-81 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS09965 6cc18c61ee7c7c9415a1cc86dd58cc69 450 Pfam PF07690 Major Facilitator Superfamily 25 318 5.6E-47 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 Pfam PF00137 ATP synthase subunit C 11 69 1.0E-9 T 28-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 Gene3D G3DSA:1.20.20.10 1 79 1.9E-15 T 28-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 28-03-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 28-03-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.413 T 28-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 SUPERFAMILY SSF81333 3 77 3.01E-18 T 28-03-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.6E-8 T 28-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.6E-8 T 28-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05260 7e1f10f3a0a39a1767b55d8535d4a79b 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.6E-8 T 28-03-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 380 400 - T 28-03-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 Pfam PF11842 Domain of unknown function (DUF3362) 594 718 9.7E-44 T 28-03-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 SUPERFAMILY SSF102114 361 440 2.49E-10 T 28-03-2018 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 SUPERFAMILY SSF102114 470 623 2.49E-10 T 28-03-2018 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 Pfam PF04055 Radical SAM superfamily 380 585 1.4E-19 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 Gene3D G3DSA:3.20.20.70 304 721 3.6E-30 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 SMART SM00729 376 626 9.8E-5 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 29 644 3.0E-265 T 28-03-2018 IPR022946 Uncharacterised protein family UPF0313 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 29 646 50.755 T 28-03-2018 IPR022946 Uncharacterised protein family UPF0313 AM348_RS08890 80e2369bd5d100ae4d2c0079b15e95a2 723 Pfam PF08497 Radical SAM N-terminal 29 379 3.5E-145 T 28-03-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal AM348_RS07350 173fb2cdaacd3678a7968e3a88b6734e 100 Pfam PF00276 Ribosomal protein L23 9 95 5.9E-31 T 28-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AM348_RS07350 173fb2cdaacd3678a7968e3a88b6734e 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 28-03-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07350 173fb2cdaacd3678a7968e3a88b6734e 100 SUPERFAMILY SSF54189 6 97 2.84E-30 T 28-03-2018 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07350 173fb2cdaacd3678a7968e3a88b6734e 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.535 T 28-03-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 AM348_RS07350 173fb2cdaacd3678a7968e3a88b6734e 100 Gene3D G3DSA:3.30.70.330 6 100 2.0E-30 T 28-03-2018 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 Gene3D G3DSA:3.10.290.10 20 93 4.2E-14 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 Pfam PF00849 RNA pseudouridylate synthase 115 263 4.1E-30 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 Gene3D G3DSA:3.30.2350.10 106 331 6.2E-70 T 28-03-2018 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 154 168 - T 28-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 SUPERFAMILY SSF55120 109 328 1.22E-66 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 SMART SM00363 34 93 1.6E-9 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 SUPERFAMILY SSF55174 33 84 6.77E-9 T 28-03-2018 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 30 328 2.5E-99 T 28-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS19855 379e714682a2d2ff53218f88f36894af 331 Pfam PF01479 S4 domain 34 80 7.0E-10 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS02545 88aeb8c6ee52befd8904af4b446a22ae 99 Pfam PF14189 Domain of unknown function (DUF4312) 5 88 2.0E-34 T 28-03-2018 IPR020037 Protein of unknown function DUF4312 AM348_RS02545 88aeb8c6ee52befd8904af4b446a22ae 99 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 4.5E-41 T 28-03-2018 IPR020037 Protein of unknown function DUF4312 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 SUPERFAMILY SSF53706 219 688 6.6E-83 T 28-03-2018 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Gene3D G3DSA:3.40.50.740 281 414 2.4E-9 T 28-03-2018 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Gene3D G3DSA:3.10.20.30 1 165 1.3E-10 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Gene3D G3DSA:3.40.50.740 475 664 3.1E-20 T 28-03-2018 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 SMART SM00926 221 275 5.8E-9 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 2.2E-9 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 28-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 SMART SM00929 88 128 1.9E-19 T 28-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 SUPERFAMILY SSF54862 81 213 4.18E-34 T 28-03-2018 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Pfam PF00384 Molybdopterin oxidoreductase 563 637 3.0E-7 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Pfam PF01568 Molydopterin dinucleotide binding domain 825 890 2.4E-7 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 28-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 1.1E-14 T 28-03-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 SUPERFAMILY SSF50692 814 891 4.29E-14 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS12605 beccf65474985a16de0900578dc4e633 908 SUPERFAMILY SSF54292 1 77 7.44E-19 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 655 3.7E-205 T 28-03-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Gene3D G3DSA:2.20.25.90 214 280 3.1E-9 T 28-03-2018 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 2.5E-11 T 28-03-2018 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 28-03-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12605 beccf65474985a16de0900578dc4e633 908 Gene3D G3DSA:2.40.40.20 824 901 4.8E-14 T 28-03-2018 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 SUPERFAMILY SSF58104 382 691 1.31E-52 T 28-03-2018 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 Gene3D G3DSA:1.10.287.950 466 694 6.2E-35 T 28-03-2018 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 Gene3D G3DSA:1.10.287.950 363 465 2.0E-6 T 28-03-2018 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 474 654 8.3E-27 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 SMART SM00283 429 690 1.7E-34 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 SMART SM00304 362 414 1.5E-9 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 Pfam PF00672 HAMP domain 364 410 2.0E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 450 479 9.1E-14 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 556 585 9.1E-14 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 527 554 9.1E-14 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 Pfam PF17201 Cache 3/Cache 2 fusion domain 66 339 2.1E-54 T 28-03-2018 IPR033462 Cache 3/Cache 2 fusion domain AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 SUPERFAMILY SSF103190 144 226 6.28E-8 T 28-03-2018 IPR029151 Periplasmic sensor domain-like AM348_RS10245 bd1489b9dd058ea9aaeed49b9ea8c6d6 696 Gene3D G3DSA:3.30.450.20 66 342 2.1E-22 T 28-03-2018 AM348_RS13740 cf1b371430ebf8c18bc0f9d0c28e22e2 159 Gene3D G3DSA:3.90.79.10 1 159 1.1E-25 T 28-03-2018 AM348_RS13740 cf1b371430ebf8c18bc0f9d0c28e22e2 159 Hamap MF_00941 GDP-mannose mannosyl hydrolase [gmm]. 1 159 50.146 T 28-03-2018 IPR028613 GDP-mannose mannosyl hydrolase, Enterobacteria GO:0000287|GO:0008727|GO:0030145 AM348_RS13740 cf1b371430ebf8c18bc0f9d0c28e22e2 159 Pfam PF00293 NUDIX domain 19 141 1.9E-16 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS13740 cf1b371430ebf8c18bc0f9d0c28e22e2 159 SUPERFAMILY SSF55811 2 147 4.6E-30 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS13740 cf1b371430ebf8c18bc0f9d0c28e22e2 159 ProSitePatterns PS00893 Nudix box signature. 50 71 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS13740 cf1b371430ebf8c18bc0f9d0c28e22e2 159 PIRSF PIRSF037599 1 152 8.6E-75 T 28-03-2018 IPR033715 GDP-mannose mannosyl hydrolase GO:0008727 AM348_RS20840 fba1950bd361136a83bd2924811d51ba 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 203 1.6E-119 T 28-03-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AM348_RS20840 fba1950bd361136a83bd2924811d51ba 203 SUPERFAMILY SSF89392 22 202 5.49E-56 T 28-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AM348_RS20840 fba1950bd361136a83bd2924811d51ba 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 9 201 32.465 T 28-03-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 AM348_RS20840 fba1950bd361136a83bd2924811d51ba 203 Gene3D G3DSA:2.50.20.10 19 202 1.3E-39 T 28-03-2018 AM348_RS20840 fba1950bd361136a83bd2924811d51ba 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 191 2.0E-57 T 28-03-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Pfam PF16188 C-terminal region of peptidase_M24 528 587 5.4E-21 T 28-03-2018 IPR032416 Peptidase M24, C-terminal domain AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Pfam PF00557 Metallopeptidase family M24 304 521 2.5E-39 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 SUPERFAMILY SSF53092 8 132 4.36E-14 T 28-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Gene3D G3DSA:3.90.230.10 279 548 1.6E-53 T 28-03-2018 AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 SUPERFAMILY SSF53092 157 281 4.19E-5 T 28-03-2018 IPR028980 Creatinase/Aminopeptidase P, N-terminal AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Pfam PF01321 Creatinase/Prolidase N-terminal domain 7 134 5.6E-18 T 28-03-2018 IPR000587 Creatinase, N-terminal GO:0016787 AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Gene3D G3DSA:3.40.350.10 1 141 6.0E-38 T 28-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 SUPERFAMILY SSF55920 298 553 2.36E-49 T 28-03-2018 IPR000994 Peptidase M24 AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Pfam PF16189 Creatinase/Prolidase N-terminal domain 143 301 4.5E-34 T 28-03-2018 AM348_RS19775 5f774ed753d8095c4ca54a39b6107436 592 Gene3D G3DSA:3.40.350.10 150 278 1.1E-20 T 28-03-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal AM348_RS10820 17f69614c4baeb35472e6441835bb91e 211 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 28-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS10820 17f69614c4baeb35472e6441835bb91e 211 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 28-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS10820 17f69614c4baeb35472e6441835bb91e 211 SMART SM00947 27 193 2.3E-64 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS10820 17f69614c4baeb35472e6441835bb91e 211 Gene3D G3DSA:3.40.1050.10 1 210 2.8E-66 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS10820 17f69614c4baeb35472e6441835bb91e 211 SUPERFAMILY SSF53056 1 203 1.28E-64 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS10820 17f69614c4baeb35472e6441835bb91e 211 Pfam PF00484 Carbonic anhydrase 34 189 3.7E-48 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PIRSF PIRSF000097 1 115 4.1E-37 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PIRSF PIRSF000097 111 271 1.2E-40 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PRINTS PR00069 Aldo-keto reductase signature 154 183 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PRINTS PR00069 Aldo-keto reductase signature 35 59 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PRINTS PR00069 Aldo-keto reductase signature 91 109 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PRINTS PR00069 Aldo-keto reductase signature 120 137 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 PRINTS PR00069 Aldo-keto reductase signature 193 217 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 SUPERFAMILY SSF51430 3 262 1.96E-88 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 Gene3D G3DSA:3.20.20.100 1 273 2.4E-93 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS17965 e7eb402d1e52f598a8cb4db168408905 283 Pfam PF00248 Aldo/keto reductase family 15 257 1.1E-47 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Pfam PF02347 Glycine cleavage system P-protein 481 739 4.1E-8 T 28-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Pfam PF02347 Glycine cleavage system P-protein 16 440 9.3E-192 T 28-03-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Gene3D G3DSA:3.40.640.10 96 342 5.0E-35 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Gene3D G3DSA:3.90.1150.10 775 907 1.8E-43 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 956 25.624 T 28-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Gene3D G3DSA:3.90.1150.10 343 442 1.2E-22 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 Gene3D G3DSA:3.40.640.10 530 774 2.0E-42 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 950 0.0 T 28-03-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 SUPERFAMILY SSF53383 17 440 7.79E-98 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 SUPERFAMILY SSF53383 929 951 3.34E-100 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS09450 01eab873829e25ca9b48f5901f09200f 957 SUPERFAMILY SSF53383 480 889 3.34E-100 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS02585 c5fc180f181face806f0185769835265 332 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 328 42.084 T 28-03-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 268 280 - T 28-03-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 177 200 2.6E-70 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 2.6E-70 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 146 169 2.6E-70 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 2.6E-70 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 203 230 2.6E-70 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 302 327 2.6E-70 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 Gene3D G3DSA:3.40.190.80 198 329 9.2E-57 T 28-03-2018 AM348_RS02585 c5fc180f181face806f0185769835265 332 Gene3D G3DSA:3.30.540.10 6 197 7.9E-62 T 28-03-2018 AM348_RS02585 c5fc180f181face806f0185769835265 332 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 192 4.2E-83 T 28-03-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PIRSF PIRSF000904 1 331 5.0E-121 T 28-03-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 PIRSF PIRSF500210 1 330 8.6E-125 T 28-03-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 AM348_RS02585 c5fc180f181face806f0185769835265 332 SUPERFAMILY SSF56655 2 326 2.09E-112 T 28-03-2018 AM348_RS06220 e5e1f3f235aaaab86ef3a45a684884fb 426 SUPERFAMILY SSF103473 8 414 8.63E-83 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06220 e5e1f3f235aaaab86ef3a45a684884fb 426 PIRSF PIRSF002808 2 420 3.2E-34 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS06220 e5e1f3f235aaaab86ef3a45a684884fb 426 Pfam PF07690 Major Facilitator Superfamily 269 415 5.4E-14 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06220 e5e1f3f235aaaab86ef3a45a684884fb 426 Pfam PF07690 Major Facilitator Superfamily 18 257 6.9E-42 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06220 e5e1f3f235aaaab86ef3a45a684884fb 426 Gene3D G3DSA:1.20.1250.20 221 419 1.6E-31 T 28-03-2018 AM348_RS06220 e5e1f3f235aaaab86ef3a45a684884fb 426 Gene3D G3DSA:1.20.1250.20 5 207 3.8E-33 T 28-03-2018 AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 2.2E-13 T 28-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 1.9E-46 T 28-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 SMART SM00346 13 102 1.2E-36 T 28-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 SUPERFAMILY SSF55781 77 258 1.05E-55 T 28-03-2018 IPR029016 GAF domain-like AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 Gene3D G3DSA:3.30.450.40 100 263 1.0E-53 T 28-03-2018 IPR029016 GAF domain-like AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 SUPERFAMILY SSF46785 13 86 1.43E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15310 e595295f594e048ce8769e72c7b7e60c 263 Gene3D G3DSA:1.10.10.10 11 99 3.6E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01345 7cee49d13b62a8f370ed78c2d400acbf 536 Gene3D G3DSA:1.10.3720.10 10 273 5.3E-32 T 28-03-2018 AM348_RS01345 7cee49d13b62a8f370ed78c2d400acbf 536 SUPERFAMILY SSF161098 287 527 1.31E-32 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS01345 7cee49d13b62a8f370ed78c2d400acbf 536 Gene3D G3DSA:1.10.3720.10 321 534 9.4E-25 T 28-03-2018 AM348_RS01345 7cee49d13b62a8f370ed78c2d400acbf 536 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 7.5E-280 T 28-03-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 AM348_RS01345 7cee49d13b62a8f370ed78c2d400acbf 536 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 268 1.1E-11 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS01345 7cee49d13b62a8f370ed78c2d400acbf 536 SUPERFAMILY SSF161098 11 265 1.5E-43 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Gene3D G3DSA:3.40.50.300 417 634 4.4E-54 T 28-03-2018 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 ProSitePatterns PS01312 SecA family signature. 500 515 - T 28-03-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SUPERFAMILY SSF52540 416 618 7.24E-59 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SMART SM00957 6 402 0.0 T 28-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Gene3D G3DSA:3.40.50.300 304 416 4.3E-8 T 28-03-2018 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Gene3D G3DSA:3.40.50.300 9 267 1.4E-56 T 28-03-2018 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Gene3D G3DSA:1.10.3060.10 635 733 3.9E-29 T 28-03-2018 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Pfam PF07517 SecA DEAD-like domain 7 402 3.3E-132 T 28-03-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.911 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 117 127 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 376 393 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 63 87 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 101 115 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 339 361 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 413 426 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 PRINTS PR00906 SecA protein signature 170 190 8.8E-74 T 28-03-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SMART SM00958 228 358 5.3E-83 T 28-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Pfam PF02810 SEC-C motif 881 899 1.1E-10 T 28-03-2018 IPR004027 SEC-C motif AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SUPERFAMILY SSF52540 368 415 6.9E-84 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SUPERFAMILY SSF52540 5 228 6.9E-84 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Pfam PF01043 SecA preprotein cross-linking domain 232 358 2.1E-39 T 28-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SUPERFAMILY SSF81886 620 840 5.62E-86 T 28-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SUPERFAMILY SSF81886 877 889 5.62E-86 T 28-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 SUPERFAMILY SSF81767 227 368 4.71E-44 T 28-03-2018 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Pfam PF07516 SecA Wing and Scaffold domain 617 830 3.5E-69 T 28-03-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 AM348_RS01170 eb1e6147e2b5f3eb67a2f8c5302464ef 901 Gene3D G3DSA:3.10.450.50 734 901 2.0E-56 T 28-03-2018 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 Gene3D G3DSA:3.30.390.10 2 162 2.3E-62 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 TIGRFAM TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase 2 410 2.0E-165 T 28-03-2018 IPR006395 Methylaspartate ammonia-lyase GO:0050096 KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 Pfam PF07476 Methylaspartate ammonia-lyase C-terminus 162 410 2.4E-119 T 28-03-2018 IPR022662 Methylaspartate ammonia-lyase, C-terminal KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 SUPERFAMILY SSF54826 1 160 2.16E-63 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 Pfam PF05034 Methylaspartate ammonia-lyase N-terminus 1 159 8.8E-72 T 28-03-2018 IPR022665 Methylaspartate ammonia-lyase, N-terminal KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 PIRSF PIRSF017107 1 413 1.8E-243 T 28-03-2018 IPR006395 Methylaspartate ammonia-lyase GO:0050096 KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 SUPERFAMILY SSF51604 163 411 4.72E-80 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS21610 9702b73c933b3a9928e5f5d267f2a1fd 413 Gene3D G3DSA:3.20.20.120 165 413 9.2E-33 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 Pfam PF13416 Bacterial extracellular solute-binding protein 46 335 5.3E-34 T 28-03-2018 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 SUPERFAMILY SSF53850 29 369 1.28E-105 T 28-03-2018 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 127 143 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 51 72 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 78 92 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 269 288 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 314 340 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 158 172 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 219 238 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 181 200 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 35 51 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 94 107 2.2E-75 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 PIRSF PIRSF019574 1 370 1.2E-143 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 Gene3D G3DSA:3.40.190.10 199 335 4.2E-20 T 28-03-2018 AM348_RS20935 f431d2b2452b436c8b6fbe7475e7a8e9 370 Gene3D G3DSA:3.40.190.10 30 198 2.5E-33 T 28-03-2018 AM348_RS19680 45f6791cc67e31c6b350ad6704811585 299 Pfam PF01497 Periplasmic binding protein 39 267 1.7E-26 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS19680 45f6791cc67e31c6b350ad6704811585 299 Gene3D G3DSA:3.40.50.1980 15 138 4.3E-28 T 28-03-2018 AM348_RS19680 45f6791cc67e31c6b350ad6704811585 299 SUPERFAMILY SSF53807 34 291 4.32E-56 T 28-03-2018 AM348_RS19680 45f6791cc67e31c6b350ad6704811585 299 Gene3D G3DSA:3.40.50.1980 139 299 9.0E-28 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Pfam PF13616 PPIC-type PPIASE domain 283 383 1.7E-25 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Pfam PF09312 SurA N-terminal domain 25 142 1.6E-46 T 28-03-2018 IPR015391 SurA N-terminal AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.295 T 28-03-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Gene3D G3DSA:3.10.50.40 279 386 1.1E-31 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 321 342 - T 28-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 SUPERFAMILY SSF54534 283 385 3.4E-32 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 SUPERFAMILY SSF54534 173 275 7.85E-28 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Gene3D G3DSA:3.10.50.40 163 278 3.5E-23 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Pfam PF00639 PPIC-type PPIASE domain 178 272 2.7E-20 T 28-03-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 Gene3D G3DSA:1.10.4030.10 21 148 4.1E-27 T 28-03-2018 AM348_RS01415 4c753e3a6e96b51734dc16cc2b9c6b02 428 SUPERFAMILY SSF109998 25 200 3.14E-45 T 28-03-2018 IPR027304 Trigger factor/SurA domain AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SUPERFAMILY SSF50341 532 664 4.97E-31 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SMART SM00073 5 102 1.3E-34 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Pfam PF01627 Hpt domain 8 105 1.3E-20 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Pfam PF09078 CheY binding 170 232 1.0E-20 T 28-03-2018 IPR015162 CheY binding AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SMART SM00387 393 533 1.4E-26 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Gene3D G3DSA:1.20.120.160 1 145 4.3E-36 T 28-03-2018 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Gene3D G3DSA:3.30.70.400 168 233 8.4E-25 T 28-03-2018 IPR015162 CheY binding AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 452 1.2E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 530 1.2E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 511 1.2E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 487 1.2E-14 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Gene3D G3DSA:1.10.287.560 285 349 1.5E-19 T 28-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SMART SM00260 525 665 1.9E-44 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 286 348 1.1E-17 T 28-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Gene3D G3DSA:3.30.565.10 351 539 1.0E-26 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Gene3D G3DSA:2.40.50.180 549 618 7.3E-12 T 28-03-2018 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SMART SM01231 285 348 4.3E-21 T 28-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SUPERFAMILY SSF47384 286 349 3.81E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Gene3D G3DSA:2.30.30.40 619 664 3.8E-21 T 28-03-2018 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 396 532 1.8E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SUPERFAMILY SSF55874 351 531 7.33E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 Pfam PF01584 CheW-like domain 538 664 2.3E-26 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SUPERFAMILY SSF55052 170 233 1.94E-18 T 28-03-2018 IPR015162 CheY binding AM348_RS15005 41e8ec2cdc688d49ce47faac0fd40394 678 SUPERFAMILY SSF47226 5 126 1.96E-33 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 2.2E-22 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.2E-22 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.2E-22 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 2.2E-22 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 2.2E-22 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 Gene3D G3DSA:1.10.287.990 20 82 2.4E-28 T 28-03-2018 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 2.1E-39 T 28-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 1.8E-35 T 28-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 SUPERFAMILY SSF54719 82 192 3.8E-45 T 28-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 PIRSF PIRSF000349 1 193 3.5E-87 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 28-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS18255 96c9907e558d9e6a48e1d10dd3501fbb 193 SUPERFAMILY SSF46609 1 84 1.7E-36 T 28-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 Pfam PF01476 LysM domain 55 91 2.1E-7 T 28-03-2018 IPR018392 LysM domain AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 Gene3D G3DSA:2.40.440.10 97 242 3.6E-29 T 28-03-2018 AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 SMART SM00257 45 91 6.0E-5 T 28-03-2018 IPR018392 LysM domain AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 SUPERFAMILY SSF141523 101 240 7.06E-28 T 28-03-2018 AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 Gene3D G3DSA:3.10.350.10 44 92 1.2E-8 T 28-03-2018 AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 SUPERFAMILY SSF54106 52 91 6.28E-5 T 28-03-2018 IPR018392 LysM domain AM348_RS19485 d9b06fa8f62f0cc58e4402e99b9b8950 321 Pfam PF03734 L,D-transpeptidase catalytic domain 103 240 1.2E-19 T 28-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 6.8E-43 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 Gene3D G3DSA:2.40.50.140 1 124 8.2E-64 T 28-03-2018 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 4.6E-60 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 4.6E-60 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 4.6E-60 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 4.6E-60 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 4.6E-60 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 4.6E-60 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 PIRSF PIRSF002133 1 124 4.0E-54 T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 SUPERFAMILY SSF50249 3 123 8.14E-52 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.691 T 28-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 28-03-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07295 f6b543dbda6ccbc6b2cba803621474cb 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 1.8E-70 T 28-03-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07285 0a2b209187745555d6aa87c10c74388f 119 SUPERFAMILY SSF75169 1 119 5.76E-33 T 28-03-2018 IPR027396 DsrEFH-like AM348_RS07285 0a2b209187745555d6aa87c10c74388f 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 4 119 3.3E-44 T 28-03-2018 IPR017462 Sulphur relay, TusC/DsrF AM348_RS07285 0a2b209187745555d6aa87c10c74388f 119 Gene3D G3DSA:3.40.1260.10 5 116 1.4E-17 T 28-03-2018 AM348_RS07285 0a2b209187745555d6aa87c10c74388f 119 Pfam PF02635 DsrE/DsrF-like family 2 119 6.0E-21 T 28-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein AM348_RS07285 0a2b209187745555d6aa87c10c74388f 119 Hamap MF_00389 Protein TusC [tusC]. 1 119 34.911 T 28-03-2018 IPR017462 Sulphur relay, TusC/DsrF AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 Gene3D G3DSA:3.20.20.10 1 216 2.9E-45 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 1.2E-70 T 28-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 SUPERFAMILY SSF50621 228 358 1.12E-43 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 Pfam PF00842 Alanine racemase, C-terminal domain 234 357 2.4E-39 T 28-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 Hamap MF_01201 Alanine racemase. 1 358 34.818 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 Gene3D G3DSA:2.40.37.10 217 359 4.8E-51 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 SUPERFAMILY SSF51419 8 235 8.72E-69 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 267 282 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 288 305 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 192 219 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 26 42 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 120 132 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 250 265 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 155 166 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 340 353 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 PRINTS PR00992 Alanine racemase signature 60 78 1.0E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 28-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 TIGRFAM TIGR00492 alr: alanine racemase 3 359 1.5E-148 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS03535 5202629fe56b7109b3b5da767a4f30a1 359 SMART SM01005 234 358 2.5E-61 T 28-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 Gene3D G3DSA:2.30.130.10 4 72 1.3E-26 T 28-03-2018 IPR002478 PUA domain GO:0003723 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 70.597 T 28-03-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 183 371 7.8E-29 T 28-03-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 Gene3D G3DSA:3.30.750.80 74 180 1.1E-32 T 28-03-2018 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 SMART SM00359 3 88 3.3E-17 T 28-03-2018 IPR002478 PUA domain GO:0003723 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 SUPERFAMILY SSF53335 79 392 4.78E-73 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 Gene3D G3DSA:3.40.50.150 182 395 1.9E-38 T 28-03-2018 AM348_RS20490 71dfdb188b2dff17bf08a60b12f1e62c 396 SUPERFAMILY SSF88697 4 72 3.6E-17 T 28-03-2018 IPR015947 PUA-like domain AM348_RS16445 de9bdc9b17b9b995d8ffdf8f4948ba25 196 Gene3D G3DSA:3.40.50.300 6 196 1.3E-71 T 28-03-2018 AM348_RS16445 de9bdc9b17b9b995d8ffdf8f4948ba25 196 SUPERFAMILY SSF52540 7 196 1.72E-76 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16445 de9bdc9b17b9b995d8ffdf8f4948ba25 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 6.3E-5 T 28-03-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS16445 de9bdc9b17b9b995d8ffdf8f4948ba25 196 PIRSF PIRSF015617 1 196 6.6E-70 T 28-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS16445 de9bdc9b17b9b995d8ffdf8f4948ba25 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 9.8E-60 T 28-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS16445 de9bdc9b17b9b995d8ffdf8f4948ba25 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 25 196 3.9E-81 T 28-03-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 7.6E-35 T 28-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 7.6E-35 T 28-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 7.6E-35 T 28-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 7.6E-35 T 28-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 Gene3D G3DSA:1.10.10.60 1 98 4.2E-27 T 28-03-2018 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 SUPERFAMILY SSF46689 4 98 3.88E-27 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PIRSF PIRSF002097 1 98 4.9E-46 T 28-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS07645 e9ff87b2f6cbc07850e519f60813e1f6 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.769 T 28-03-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 AM348_RS20770 1edd50531a8ab446ae781f4381e28578 230 Pfam PF04239 Protein of unknown function (DUF421) 104 167 3.8E-16 T 28-03-2018 IPR007353 Protein of unknown function DUF421 AM348_RS20770 1edd50531a8ab446ae781f4381e28578 230 Gene3D G3DSA:3.30.240.20 97 166 1.0E-19 T 28-03-2018 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain AM348_RS10790 b5d87ba3c4972aab2a369092df2635fc 403 Gene3D G3DSA:3.40.50.2000 13 224 2.2E-12 T 28-03-2018 AM348_RS10790 b5d87ba3c4972aab2a369092df2635fc 403 Pfam PF13439 Glycosyltransferase Family 4 14 221 1.6E-13 T 28-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM348_RS10790 b5d87ba3c4972aab2a369092df2635fc 403 Gene3D G3DSA:3.40.50.2000 225 383 8.1E-37 T 28-03-2018 AM348_RS10790 b5d87ba3c4972aab2a369092df2635fc 403 SUPERFAMILY SSF53756 1 400 1.1E-72 T 28-03-2018 AM348_RS10790 b5d87ba3c4972aab2a369092df2635fc 403 Pfam PF00534 Glycosyl transferases group 1 224 372 5.5E-28 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 Pfam PF00425 chorismate binding enzyme 242 502 8.3E-83 T 28-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM348_RS16420 075776466acde11121c27e3484c1ae36 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 6.9E-24 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 6.9E-24 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 6.9E-24 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 6.9E-24 T 28-03-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 191 3.4E-12 T 28-03-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 SUPERFAMILY SSF56322 7 516 4.84E-163 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 PIRSF PIRSF001373 1 520 1.3E-248 T 28-03-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 Gene3D G3DSA:3.60.120.10 1 520 1.1E-159 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS16420 075776466acde11121c27e3484c1ae36 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 515 2.4E-265 T 28-03-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 Pfam PF00271 Helicase conserved C-terminal domain 522 589 2.5E-5 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 SUPERFAMILY SSF52540 215 440 2.04E-41 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 SUPERFAMILY SSF52540 503 601 2.04E-41 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 SMART SM00490 492 589 1.1E-8 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 Gene3D G3DSA:3.40.50.300 389 621 3.6E-22 T 28-03-2018 AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 Gene3D G3DSA:3.40.50.300 196 361 1.3E-27 T 28-03-2018 AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 Pfam PF00270 DEAD/DEAH box helicase 203 362 7.1E-16 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 SMART SM00487 195 390 1.0E-19 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 TIGRFAM TIGR00595 priA: primosomal protein N' 221 730 2.9E-217 T 28-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AM348_RS04265 e6e2997296d457ba349c4b9d4e744d2d 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 732 26.247 T 28-03-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 331 2.5E-148 T 28-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 PIRSF PIRSF002401 1 375 1.0E-139 T 28-03-2018 IPR035101 GTP-binding protein, Obg-type AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 Gene3D G3DSA:3.40.50.300 159 375 3.3E-32 T 28-03-2018 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 Pfam PF01018 GTP1/OBG 4 157 6.3E-59 T 28-03-2018 IPR006169 GTP1/OBG domain AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 1.7E-23 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 Gene3D G3DSA:2.70.210.12 2 156 4.7E-58 T 28-03-2018 IPR006169 GTP1/OBG domain AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 SUPERFAMILY SSF82051 2 157 9.29E-57 T 28-03-2018 IPR006169 GTP1/OBG domain AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 SUPERFAMILY SSF52540 152 336 3.16E-48 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 28-03-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.359 T 28-03-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.5E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 3.5E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.5E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS08030 07ec5bd9a7eb416052720685e7c9e8e3 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 3.5E-34 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 28-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 28-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 Gene3D G3DSA:1.20.5.1030 68 119 1.6E-18 T 28-03-2018 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.9E-20 T 28-03-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 1.0E-41 T 28-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 1.0E-41 T 28-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 1.0E-41 T 28-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 1.0E-41 T 28-03-2018 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 AM348_RS04010 6a85ba11252b39b39c21bb45433c3fa6 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 28-03-2018 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 AM348_RS10630 a0a00d84b013fe1287387f2588d5ea36 81 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 2.4E-34 T 28-03-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 AM348_RS10630 a0a00d84b013fe1287387f2588d5ea36 81 Gene3D G3DSA:3.40.30.10 1 80 9.5E-13 T 28-03-2018 AM348_RS10630 a0a00d84b013fe1287387f2588d5ea36 81 SUPERFAMILY SSF52833 1 74 3.3E-20 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS10630 a0a00d84b013fe1287387f2588d5ea36 81 Pfam PF00462 Glutaredoxin 3 58 3.8E-13 T 28-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 SUPERFAMILY SSF46458 1 142 2.16E-37 T 28-03-2018 IPR009050 Globin-like AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Pfam PF00970 Oxidoreductase FAD-binding domain 157 252 1.3E-8 T 28-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 56.63 T 28-03-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Gene3D G3DSA:2.40.30.10 158 254 1.2E-25 T 28-03-2018 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 SUPERFAMILY SSF63380 148 253 5.79E-29 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Gene3D G3DSA:1.10.490.10 1 157 2.3E-38 T 28-03-2018 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Gene3D G3DSA:3.40.50.80 255 396 2.6E-23 T 28-03-2018 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 1.3E-5 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 1.3E-5 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 1.3E-5 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 1.3E-5 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 372 1.5E-17 T 28-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 SUPERFAMILY SSF52343 256 394 3.54E-36 T 28-03-2018 AM348_RS11375 8a8f5fd5dac752fd7b5eecea2a0b96a2 396 Pfam PF00042 Globin 7 102 2.0E-14 T 28-03-2018 IPR000971 Globin GO:0020037 AM348_RS16775 4cc6ad60bcf07efeea9ea2e2824a6b78 80 Gene3D G3DSA:3.30.910.10 1 77 1.5E-26 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS16775 4cc6ad60bcf07efeea9ea2e2824a6b78 80 SUPERFAMILY SSF54857 1 79 1.83E-25 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS16775 4cc6ad60bcf07efeea9ea2e2824a6b78 80 Pfam PF06183 DinI-like family 17 77 2.6E-20 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 Gene3D G3DSA:3.10.350.10 85 179 7.7E-6 T 28-03-2018 AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 SUPERFAMILY SSF51261 170 407 5.75E-69 T 28-03-2018 IPR011055 Duplicated hybrid motif AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 2.4E-8 T 28-03-2018 IPR013731 Opacity-associated protein A, N-terminal AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 Pfam PF01476 LysM domain 98 141 1.8E-7 T 28-03-2018 IPR018392 LysM domain AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 Pfam PF01551 Peptidase family M23 312 406 1.2E-32 T 28-03-2018 IPR016047 Peptidase M23 AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 Gene3D G3DSA:2.70.70.10 279 436 5.4E-45 T 28-03-2018 AM348_RS15160 8fc4a3f363385ffd59b4ff2df59f181e 439 SMART SM00257 97 142 1.1E-5 T 28-03-2018 IPR018392 LysM domain AM348_RS05345 55b997b7860ab484b1bf425183c89734 248 Gene3D G3DSA:3.90.470.20 11 140 2.7E-13 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 55.292 T 28-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 PIRSF PIRSF001491 1 407 5.9E-163 T 28-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 Gene3D G3DSA:3.30.70.1250 126 235 1.6E-51 T 28-03-2018 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 Gene3D G3DSA:3.40.720.10 1 125 3.7E-20 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 SUPERFAMILY SSF53649 1 114 5.76E-69 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 SUPERFAMILY SSF53649 236 407 5.76E-69 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 SUPERFAMILY SSF143856 117 235 2.75E-50 T 28-03-2018 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 Gene3D G3DSA:3.40.720.10 247 406 6.3E-11 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 404 3.4E-201 T 28-03-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 AM348_RS01785 d70234789fd1c9519153ee4897eb2245 407 Pfam PF01676 Metalloenzyme superfamily 2 398 3.5E-44 T 28-03-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 Gene3D G3DSA:1.10.10.60 1 49 1.1E-16 T 28-03-2018 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 Gene3D G3DSA:1.10.10.60 50 146 3.2E-9 T 28-03-2018 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 28-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 SUPERFAMILY SSF46689 1 64 2.72E-16 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 2.4E-46 T 28-03-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 8.9E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 8.9E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 SUPERFAMILY SSF48498 84 203 2.67E-16 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS07630 b1c239d8c415b5001844bffa7426266d 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.3E-16 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 SMART SM00342 301 384 1.9E-30 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 Gene3D G3DSA:3.40.50.2300 2 107 1.4E-9 T 28-03-2018 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 Gene3D G3DSA:1.10.10.60 340 386 5.5E-12 T 28-03-2018 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 Gene3D G3DSA:1.10.10.60 281 339 1.6E-7 T 28-03-2018 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 338 380 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 Gene3D G3DSA:3.40.50.2300 108 280 2.8E-30 T 28-03-2018 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 Pfam PF13377 Periplasmic binding protein-like domain 113 277 1.2E-36 T 28-03-2018 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 SUPERFAMILY SSF53822 10 298 1.69E-44 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS06155 5535d131375919b469f6ac6868b25611 392 Pfam PF12833 Helix-turn-helix domain 310 384 7.6E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 353 368 7.3E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 368 384 7.3E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS06155 5535d131375919b469f6ac6868b25611 392 SUPERFAMILY SSF46689 338 385 4.93E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 392 410 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 163 182 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 481 498 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 72 97 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 292 311 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 457 472 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 145 163 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 262 278 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 416 434 1.8E-81 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 Pfam PF01019 Gamma-glutamyltranspeptidase 65 573 1.1E-190 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 50 572 7.0E-232 T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 SUPERFAMILY SSF56235 42 573 5.98E-198 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS06820 8de51a117667909b34d61c3868f1a4c3 581 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 392 416 - T 28-03-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 AM348_RS13530 5678d22f9119ff48c41242d26aa2b209 144 Pfam PF07681 DoxX 20 98 1.4E-18 T 28-03-2018 IPR032808 DoxX family AM348_RS19625 d1fe7968a211ee51488b19b700e3e636 484 PIRSF PIRSF006603 19 476 8.2E-69 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS19625 d1fe7968a211ee51488b19b700e3e636 484 Pfam PF01554 MatE 267 428 4.0E-20 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS19625 d1fe7968a211ee51488b19b700e3e636 484 Pfam PF01554 MatE 37 197 1.5E-35 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS19625 d1fe7968a211ee51488b19b700e3e636 484 TIGRFAM TIGR00797 matE: MATE efflux family protein 37 441 9.2E-66 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS20240 97a12c57cac5b6957f205b1291189682 134 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 125 4.3E-7 T 28-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM348_RS20240 97a12c57cac5b6957f205b1291189682 134 Gene3D G3DSA:3.10.180.10 10 134 2.1E-23 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS20240 97a12c57cac5b6957f205b1291189682 134 SUPERFAMILY SSF54593 5 127 3.3E-22 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS10590 4d49896078797db2fbb405f63c7718c1 394 Gene3D G3DSA:1.20.1250.20 3 198 4.5E-26 T 28-03-2018 AM348_RS10590 4d49896078797db2fbb405f63c7718c1 394 Gene3D G3DSA:1.20.1250.20 199 392 4.6E-16 T 28-03-2018 AM348_RS10590 4d49896078797db2fbb405f63c7718c1 394 Pfam PF07690 Major Facilitator Superfamily 218 385 1.3E-10 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS10590 4d49896078797db2fbb405f63c7718c1 394 Pfam PF07690 Major Facilitator Superfamily 17 191 7.0E-25 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS10590 4d49896078797db2fbb405f63c7718c1 394 SUPERFAMILY SSF103473 8 389 6.93E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 Gene3D G3DSA:1.10.260.40 3 72 1.1E-16 T 28-03-2018 AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 Gene3D G3DSA:2.60.120.10 73 184 7.6E-19 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 SUPERFAMILY SSF47413 7 73 2.49E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 Pfam PF01381 Helix-turn-helix 13 66 2.9E-14 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 SMART SM00530 11 66 1.2E-14 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 SUPERFAMILY SSF51182 51 183 2.02E-30 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS00235 9869c8c6c0b1c704c2e1b5f816ce1b8d 185 Pfam PF07883 Cupin domain 111 178 4.6E-17 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 SUPERFAMILY SSF88946 2 105 4.71E-32 T 28-03-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 Pfam PF04542 Sigma-70 region 2 25 91 4.3E-18 T 28-03-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 Gene3D G3DSA:1.10.10.10 116 187 2.8E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 183 7.0E-32 T 28-03-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 28-03-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 Pfam PF08281 Sigma-70, region 4 129 180 4.5E-19 T 28-03-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 Gene3D G3DSA:1.10.1740.10 1 115 5.3E-32 T 28-03-2018 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 SUPERFAMILY SSF88659 122 183 9.53E-19 T 28-03-2018 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS11255 34dc34f3b800d0201ccfdab1f611d303 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 4.3E-99 T 28-03-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 5.7E-36 T 28-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 SUPERFAMILY SSF110921 391 499 3.79E-26 T 28-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 SMART SM00917 369 500 2.7E-37 T 28-03-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 Pfam PF00682 HMGL-like 4 273 2.5E-105 T 28-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 SUPERFAMILY SSF51569 1 290 1.3E-96 T 28-03-2018 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 28-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 42.566 T 28-03-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 28-03-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 1.8E-257 T 28-03-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 AM348_RS01290 083a93c3d43e90ebc33bd730de8282ee 523 Gene3D G3DSA:3.20.20.70 1 331 3.9E-107 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS22055 c2d50f8a3c9fddbd5eb2f0086820aa08 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 2.5E-24 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS22055 c2d50f8a3c9fddbd5eb2f0086820aa08 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 2.5E-18 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS22055 c2d50f8a3c9fddbd5eb2f0086820aa08 224 Gene3D G3DSA:1.10.3720.10 2 224 3.5E-40 T 28-03-2018 AM348_RS22055 c2d50f8a3c9fddbd5eb2f0086820aa08 224 SUPERFAMILY SSF161098 14 210 1.24E-38 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS00215 bdc58723d74270619e2341a717ab0711 740 SUPERFAMILY SSF141868 491 736 2.75E-62 T 28-03-2018 IPR001633 EAL domain AM348_RS00215 bdc58723d74270619e2341a717ab0711 740 SMART SM00052 484 737 1.4E-62 T 28-03-2018 IPR001633 EAL domain AM348_RS00215 bdc58723d74270619e2341a717ab0711 740 Gene3D G3DSA:3.20.20.450 478 740 4.0E-65 T 28-03-2018 IPR001633 EAL domain AM348_RS00215 bdc58723d74270619e2341a717ab0711 740 Pfam PF00563 EAL domain 491 732 8.5E-57 T 28-03-2018 IPR001633 EAL domain AM348_RS09265 b2548122125a1a2d190d96534a7df734 235 Pfam PF04231 Endonuclease I 45 229 1.4E-46 T 28-03-2018 IPR007346 Endonuclease I GO:0004518 AM348_RS09265 b2548122125a1a2d190d96534a7df734 235 SUPERFAMILY SSF54060 26 230 7.06E-89 T 28-03-2018 AM348_RS10830 39ff80fb417f0f62a97032cba9044c5c 486 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 17 471 1.0E-145 T 28-03-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 AM348_RS10830 39ff80fb417f0f62a97032cba9044c5c 486 Pfam PF03553 Na+/H+ antiporter family 166 467 5.8E-42 T 28-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AM348_RS03135 2b10485058afa9ea1d16ec6c85c8ec06 239 PIRSF PIRSF006171 1 230 8.4E-84 T 28-03-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AM348_RS03135 2b10485058afa9ea1d16ec6c85c8ec06 239 SMART SM00448 2 117 2.5E-21 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03135 2b10485058afa9ea1d16ec6c85c8ec06 239 Gene3D G3DSA:1.10.10.10 150 233 3.6E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03135 2b10485058afa9ea1d16ec6c85c8ec06 239 SUPERFAMILY SSF52172 1 138 1.1E-29 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS03135 2b10485058afa9ea1d16ec6c85c8ec06 239 Pfam PF00072 Response regulator receiver domain 4 117 7.4E-20 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03135 2b10485058afa9ea1d16ec6c85c8ec06 239 Gene3D G3DSA:3.40.50.2300 1 143 2.2E-28 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 SUPERFAMILY SSF51905 272 360 1.05E-62 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 SUPERFAMILY SSF51905 6 175 1.05E-62 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 Gene3D G3DSA:3.50.50.60 247 354 1.3E-14 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 4.0E-18 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 4.0E-18 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 4.0E-18 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 4.0E-18 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 334 350 4.0E-18 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 Gene3D G3DSA:3.50.50.60 1 246 5.1E-31 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 SUPERFAMILY SSF54373 179 277 8.63E-15 T 28-03-2018 AM348_RS13275 636f73d575ca886ab839dd897ef6659b 397 Pfam PF01494 FAD binding domain 5 346 2.5E-27 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 74 325 1.2E-31 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 Gene3D G3DSA:3.20.130.10 359 536 8.4E-68 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 Pfam PF05683 Fumarase C-terminus 332 537 6.9E-94 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 SUPERFAMILY SSF117457 361 536 6.54E-62 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 Pfam PF05681 Fumarate hydratase (Fumerase) 51 326 3.1E-86 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 PIRSF PIRSF001394 30 548 5.9E-237 T 28-03-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 28-03-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 AM348_RS18045 026fa52c71a63b502dd05dbf16e6bbec 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 2.3E-61 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS04405 42a314f02bbb01159bd28f29052e55c0 224 Pfam PF03473 MOSC domain 47 158 2.0E-21 T 28-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AM348_RS04405 42a314f02bbb01159bd28f29052e55c0 224 Gene3D G3DSA:2.40.33.20 1 224 4.4E-50 T 28-03-2018 AM348_RS04405 42a314f02bbb01159bd28f29052e55c0 224 SUPERFAMILY SSF50800 3 223 3.66E-75 T 28-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM348_RS04405 42a314f02bbb01159bd28f29052e55c0 224 Pfam PF03475 3-alpha domain 169 212 9.6E-14 T 28-03-2018 IPR005163 3-alpha domain AM348_RS23110 9d89531af540a0fe4ed83e90226b7e73 189 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 45 149 1.5E-41 T 28-03-2018 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 Pfam PF00012 Hsp70 protein 3 228 5.6E-15 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 Pfam PF00012 Hsp70 protein 332 421 6.8E-5 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 SUPERFAMILY SSF53067 208 276 3.58E-30 T 28-03-2018 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 SUPERFAMILY SSF53067 328 447 3.58E-30 T 28-03-2018 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 Gene3D G3DSA:3.30.420.40 217 429 1.5E-30 T 28-03-2018 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 SUPERFAMILY SSF53067 85 205 2.24E-27 T 28-03-2018 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 SUPERFAMILY SSF53067 2 44 2.24E-27 T 28-03-2018 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS13645 f79f28b2ebf9542a1c7cc3d3ea8c876b 450 Gene3D G3DSA:3.30.420.40 1 216 8.6E-34 T 28-03-2018 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 Pfam PF00771 FHIPEP family 31 680 1.5E-268 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PIRSF PIRSF005419 9 692 3.4E-244 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 1.6E-283 T 28-03-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 6.9E-57 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 6.9E-57 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 6.9E-57 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 6.9E-57 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 6.9E-57 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 6.9E-57 T 28-03-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 AM348_RS15055 560588c2f7c5626b296be9568508e5d2 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 28-03-2018 IPR025505 FHIPEP conserved site AM348_RS17835 65398b81d02b27a8664d479ac861c9e7 113 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 1 113 5.0E-47 T 28-03-2018 IPR009700 Protein of unknown function DUF1283 AM348_RS17835 65398b81d02b27a8664d479ac861c9e7 113 Pfam PF06932 Protein of unknown function (DUF1283) 32 113 1.0E-41 T 28-03-2018 IPR009700 Protein of unknown function DUF1283 AM348_RS17835 65398b81d02b27a8664d479ac861c9e7 113 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 2 113 27.218 T 28-03-2018 IPR009700 Protein of unknown function DUF1283 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 50.017 T 28-03-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 SUPERFAMILY SSF46589 13 99 9.42E-23 T 28-03-2018 IPR010978 tRNA-binding arm GO:0000166 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 Gene3D G3DSA:3.30.930.10 7 327 2.8E-91 T 28-03-2018 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 3.1E-107 T 28-03-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.7E-27 T 28-03-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 SUPERFAMILY SSF55681 92 327 2.49E-81 T 28-03-2018 AM348_RS18860 8876da4ff45936bb6a84c16edda05569 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 4.8E-119 T 28-03-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 AM348_RS03070 31a9da66426aef44edc65d7226874305 115 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 9 115 36.829 T 28-03-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 AM348_RS03070 31a9da66426aef44edc65d7226874305 115 Pfam PF03091 CutA1 divalent ion tolerance protein 15 112 1.3E-32 T 28-03-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 AM348_RS03070 31a9da66426aef44edc65d7226874305 115 Gene3D G3DSA:3.30.70.120 8 115 8.0E-36 T 28-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM348_RS03070 31a9da66426aef44edc65d7226874305 115 SUPERFAMILY SSF54913 11 114 1.45E-34 T 28-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 SUPERFAMILY SSF51735 401 530 7.05E-34 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 Pfam PF00999 Sodium/hydrogen exchanger family 11 375 8.5E-63 T 28-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 Pfam PF02254 TrkA-N domain 402 512 2.6E-26 T 28-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 Gene3D G3DSA:3.40.50.720 396 561 2.2E-24 T 28-03-2018 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 Gene3D G3DSA:1.20.91.10 232 311 3.7E-12 T 28-03-2018 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 285 2.3E-92 T 28-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 PRINTS PR00335 TrkA potassium uptake protein signature 418 432 3.3E-8 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 PRINTS PR00335 TrkA potassium uptake protein signature 458 468 3.3E-8 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 PRINTS PR00335 TrkA potassium uptake protein signature 401 415 3.3E-8 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 PRINTS PR00335 TrkA potassium uptake protein signature 447 457 3.3E-8 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS01450 bef6949c3168bfa9a1674b16ace6d00e 620 Hamap MF_01413 Glutathione-regulated potassium-efflux system protein KefC [kefC]. 1 607 55.461 T 28-03-2018 IPR023941 Glutathione-regulated potassium-efflux system protein KefC GO:0005887|GO:0006813|GO:0015503|GO:0015643|GO:0019899|GO:0051595 AM348_RS09660 0587668692136efb08196322e05b09a1 278 Gene3D G3DSA:2.60.120.520 24 131 2.7E-52 T 28-03-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AM348_RS09660 0587668692136efb08196322e05b09a1 278 PIRSF PIRSF006625 1 278 1.2E-135 T 28-03-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AM348_RS09660 0587668692136efb08196322e05b09a1 278 Gene3D G3DSA:2.60.120.10 132 278 5.6E-54 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS09660 0587668692136efb08196322e05b09a1 278 Pfam PF04962 KduI/IolB family 33 273 2.8E-41 T 28-03-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AM348_RS09660 0587668692136efb08196322e05b09a1 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 278 57.122 T 28-03-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AM348_RS09660 0587668692136efb08196322e05b09a1 278 SUPERFAMILY SSF51182 2 262 1.9E-109 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 SUPERFAMILY SSF160240 209 288 2.35E-25 T 28-03-2018 AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 SUPERFAMILY SSF161111 8 207 1.96E-52 T 28-03-2018 AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 Gene3D G3DSA:1.20.1510.10 8 206 1.4E-42 T 28-03-2018 AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 5.1E-26 T 28-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 Gene3D G3DSA:3.30.70.1350 207 290 8.8E-25 T 28-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 65.416 T 28-03-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 Pfam PF01545 Cation efflux family 14 206 6.5E-47 T 28-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM348_RS04370 94a8548aa44a0a577a01d7d71032ce3e 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 288 7.8E-81 T 28-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 19 377 7.5E-100 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 Pfam PF01566 Natural resistance-associated macrophage protein 38 383 7.3E-126 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 409 38.3 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 1.3E-29 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 1.3E-29 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 1.3E-29 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 1.3E-29 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS12135 b622973fe923ccf17c87e9e7e054e6a6 412 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 1.3E-29 T 28-03-2018 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 Gene3D G3DSA:3.40.50.10090 8 55 3.3E-10 T 28-03-2018 AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 258 1.2E-67 T 28-03-2018 AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 Gene3D G3DSA:3.40.50.720 56 260 2.9E-59 T 28-03-2018 AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 SUPERFAMILY SSF51735 14 259 6.67E-79 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 1.5E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 1.5E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 1.5E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 4.2E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 4.2E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 4.2E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 4.2E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 4.2E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22460 4e875de1a536497953d3ffe15b9edb33 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 4.2E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 Gene3D G3DSA:3.30.230.10 288 457 7.9E-32 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 Pfam PF13481 AAA domain 88 225 1.6E-14 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 SUPERFAMILY SSF54211 258 272 1.1E-41 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 SUPERFAMILY SSF54211 306 457 1.1E-41 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 1.5E-9 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 127 144 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 216 244 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 177 201 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 325 348 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 86 114 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 11 35 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 PRINTS PR01874 DNA repair protein radA signature 251 277 1.7E-93 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 SUPERFAMILY SSF52540 71 291 8.89E-49 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 1.2E-238 T 28-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 SMART SM00382 94 248 5.3E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 Gene3D G3DSA:3.40.50.300 76 286 1.2E-39 T 28-03-2018 AM348_RS01755 e2285eab0fc17b4933b24c47bc9078e4 460 Hamap MF_01498 DNA repair protein RadA [radA]. 22 458 43.228 T 28-03-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 SUPERFAMILY SSF52540 3 202 1.56E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 SUPERFAMILY SSF90002 224 315 4.18E-25 T 28-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 182 7.7E-51 T 28-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 224 315 3.4E-18 T 28-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 SMART SM00833 224 317 2.1E-9 T 28-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 Gene3D G3DSA:3.40.50.300 1 202 6.8E-46 T 28-03-2018 AM348_RS01975 9ebe074123bf39e0ee5464eda26c4c57 318 Gene3D G3DSA:3.30.1220.10 209 318 1.5E-20 T 28-03-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal AM348_RS15080 3beb06fe819556edaa5641e80214ab26 188 Pfam PF06185 YecM protein 10 185 5.0E-72 T 28-03-2018 IPR010393 Protein of unknown function DUF991 AM348_RS15080 3beb06fe819556edaa5641e80214ab26 188 SUPERFAMILY SSF54593 2 185 1.8E-69 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS15080 3beb06fe819556edaa5641e80214ab26 188 Gene3D G3DSA:3.10.180.10 7 186 2.2E-78 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS20065 5f1a5de2271fc49400894998fc21572f 180 Gene3D G3DSA:3.40.220.10 1 180 4.5E-73 T 28-03-2018 AM348_RS20065 5f1a5de2271fc49400894998fc21572f 180 SUPERFAMILY SSF52949 4 173 2.19E-66 T 28-03-2018 AM348_RS20065 5f1a5de2271fc49400894998fc21572f 180 Pfam PF01661 Macro domain 21 137 1.2E-43 T 28-03-2018 IPR002589 Macro domain AM348_RS20065 5f1a5de2271fc49400894998fc21572f 180 SMART SM00506 4 137 1.0E-53 T 28-03-2018 IPR002589 Macro domain AM348_RS20065 5f1a5de2271fc49400894998fc21572f 180 Hamap MF_01205 O-acetyl-ADP-ribose deacetylase [ymdB]. 2 172 46.39 T 28-03-2018 IPR024900 O-acetyl-ADP-ribose deacetylase AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 28-03-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 Gene3D G3DSA:3.30.1440.10 1 179 4.7E-81 T 28-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 PIRSF PIRSF002161 1 179 2.3E-66 T 28-03-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 5.4E-41 T 28-03-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.884 T 28-03-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 SUPERFAMILY SSF55282 4 179 3.3E-79 T 28-03-2018 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07400 7d1f8c3dcb2a877faae64589b8f45dc7 179 Pfam PF00281 Ribosomal protein L5 24 80 1.1E-28 T 28-03-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS20330 7bb4ad3e46c20f80d7143351e02742d5 986 Gene3D G3DSA:3.40.50.300 9 264 3.5E-20 T 28-03-2018 AM348_RS20330 7bb4ad3e46c20f80d7143351e02742d5 986 SUPERFAMILY SSF52540 84 279 6.59E-15 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20330 7bb4ad3e46c20f80d7143351e02742d5 986 Pfam PF04851 Type III restriction enzyme, res subunit 11 251 1.1E-12 T 28-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 SUPERFAMILY SSF53850 122 561 8.14E-56 T 28-03-2018 AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 4.6E-37 T 28-03-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 Gene3D G3DSA:3.90.76.10 131 257 8.3E-15 T 28-03-2018 AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 168 303 9.5E-16 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 Gene3D G3DSA:3.40.190.10 258 307 0.0016 T 28-03-2018 AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 Gene3D G3DSA:3.10.105.10 316 532 2.7E-7 T 28-03-2018 AM348_RS23165 a42877000ea49956dd5d29377adb68f3 566 Gene3D G3DSA:1.10.10.10 1 112 2.6E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 Gene3D G3DSA:1.10.10.10 19 100 3.0E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 61 72 1.0E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 61 1.0E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 Gene3D G3DSA:3.40.190.10 106 315 4.2E-16 T 28-03-2018 AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 SUPERFAMILY SSF46785 20 99 1.45E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 SUPERFAMILY SSF53850 106 312 1.68E-37 T 28-03-2018 AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 82 2.8E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS01280 db69d4e2b01f165c44bd5468e387aded 315 Pfam PF03466 LysR substrate binding domain 134 312 5.7E-14 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS09220 de41f3a809de123c31803be3ddb17729 197 SUPERFAMILY SSF52972 1 195 4.97E-75 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS09220 de41f3a809de123c31803be3ddb17729 197 Gene3D G3DSA:3.90.950.10 1 197 6.0E-81 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS09220 de41f3a809de123c31803be3ddb17729 197 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 196 51.127 T 28-03-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 AM348_RS09220 de41f3a809de123c31803be3ddb17729 197 Pfam PF01725 Ham1 family 4 192 2.0E-57 T 28-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 AM348_RS09220 de41f3a809de123c31803be3ddb17729 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 5.1E-70 T 28-03-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 Reactome: R-HSA-74259 AM348_RS20150 4190f81b588996bcfd5e8f1341e74012 375 Pfam PF13473 Cupredoxin-like domain 14 115 1.3E-25 T 28-03-2018 IPR028096 EfeO-type cupredoxin-like domain AM348_RS20150 4190f81b588996bcfd5e8f1341e74012 375 Gene3D G3DSA:3.90.20.10 152 370 2.1E-4 T 28-03-2018 AM348_RS20150 4190f81b588996bcfd5e8f1341e74012 375 SUPERFAMILY SSF49503 16 116 1.65E-6 T 28-03-2018 IPR008972 Cupredoxin AM348_RS20150 4190f81b588996bcfd5e8f1341e74012 375 Pfam PF09375 Imelysin 135 368 1.0E-43 T 28-03-2018 IPR018976 Peptidase M75, Imelysin AM348_RS10860 a5b9fa5134e04325e6a49ca9757f66ad 394 Gene3D G3DSA:3.40.630.10 2 275 4.2E-53 T 28-03-2018 AM348_RS10860 a5b9fa5134e04325e6a49ca9757f66ad 394 Pfam PF07687 Peptidase dimerisation domain 171 278 9.2E-17 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS10860 a5b9fa5134e04325e6a49ca9757f66ad 394 SUPERFAMILY SSF55031 178 285 7.48E-16 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS10860 a5b9fa5134e04325e6a49ca9757f66ad 394 SUPERFAMILY SSF53187 6 174 1.94E-49 T 28-03-2018 AM348_RS10860 a5b9fa5134e04325e6a49ca9757f66ad 394 SUPERFAMILY SSF53187 309 391 1.94E-49 T 28-03-2018 AM348_RS10860 a5b9fa5134e04325e6a49ca9757f66ad 394 Pfam PF01546 Peptidase family M20/M25/M40 69 389 2.6E-31 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 SMART SM00283 267 514 3.8E-97 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 Pfam PF00672 HAMP domain 215 262 1.1E-11 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 Gene3D G3DSA:1.20.120.30 38 174 2.9E-38 T 28-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 292 314 - T 28-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 SMART SM00304 214 266 8.4E-14 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 Gene3D G3DSA:1.10.287.950 220 318 2.7E-12 T 28-03-2018 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 SUPERFAMILY SSF58104 234 516 2.62E-76 T 28-03-2018 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 189 209 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 1.1E-90 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 Pfam PF02203 Tar ligand binding domain homologue 1 172 2.5E-49 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 482 2.5E-60 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 SUPERFAMILY SSF47170 38 177 2.35E-46 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 Gene3D G3DSA:1.10.287.950 319 518 1.3E-49 T 28-03-2018 AM348_RS15020 b24b758d48a0b1c7a143fd97011e958a 551 SMART SM00319 44 180 1.2E-50 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 Gene3D G3DSA:3.20.20.120 128 431 4.2E-105 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PRINTS PR00148 Enolase signature 339 353 3.9E-44 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PRINTS PR00148 Enolase signature 368 385 3.9E-44 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PRINTS PR00148 Enolase signature 37 51 3.9E-44 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PRINTS PR00148 Enolase signature 165 178 3.9E-44 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PRINTS PR00148 Enolase signature 316 327 3.9E-44 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PRINTS PR00148 Enolase signature 107 123 3.9E-44 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 4.1E-206 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 SMART SM01193 4 134 1.7E-93 T 28-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 Gene3D G3DSA:3.30.390.10 3 127 8.0E-52 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 SMART SM01192 143 430 1.5E-214 T 28-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 Hamap MF_00318 Enolase [eno]. 2 416 44.309 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 SUPERFAMILY SSF54826 3 138 2.08E-56 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 Pfam PF03952 Enolase, N-terminal domain 4 134 5.0E-58 T 28-03-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 3.4E-142 T 28-03-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 PIRSF PIRSF001400 1 430 1.2E-192 T 28-03-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 ProSitePatterns PS00164 Enolase signature. 339 352 - T 28-03-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS10015 9f9f1235c53664e5e0a155fe1e1739ea 432 SUPERFAMILY SSF51604 143 427 6.08E-128 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 PIRSF PIRSF036917 1 676 0.0 T 28-03-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 SMART SM00642 193 637 4.8E-77 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 Gene3D G3DSA:3.20.20.80 575 651 1.6E-6 T 28-03-2018 AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 Gene3D G3DSA:3.20.20.80 176 574 1.7E-65 T 28-03-2018 AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 Gene3D G3DSA:2.60.40.1180 125 172 0.039 T 28-03-2018 AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 SUPERFAMILY SSF51445 374 643 4.4E-72 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 SUPERFAMILY SSF51445 178 318 4.4E-72 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06140 fc668b7ba7b2b7c9d80506b50bd5ae6d 676 Pfam PF00128 Alpha amylase, catalytic domain 226 594 1.6E-34 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS13920 8adbf2fcb62e51985574e9af8fc1645c 453 PIRSF PIRSF006060 2 447 3.5E-72 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS13920 8adbf2fcb62e51985574e9af8fc1645c 453 Pfam PF13520 Amino acid permease 55 408 4.0E-34 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS00630 91d13c431a102045f3ac3d3df0c99fdb 271 Pfam PF03180 NLPA lipoprotein 33 271 2.2E-101 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS00630 91d13c431a102045f3ac3d3df0c99fdb 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 1.5E-151 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS00630 91d13c431a102045f3ac3d3df0c99fdb 271 Gene3D G3DSA:3.40.190.10 127 271 1.8E-50 T 28-03-2018 AM348_RS00630 91d13c431a102045f3ac3d3df0c99fdb 271 SUPERFAMILY SSF53850 33 271 2.99E-85 T 28-03-2018 AM348_RS00630 91d13c431a102045f3ac3d3df0c99fdb 271 PIRSF PIRSF002854 1 271 1.3E-108 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS00630 91d13c431a102045f3ac3d3df0c99fdb 271 Gene3D G3DSA:3.40.190.10 32 126 6.8E-22 T 28-03-2018 AM348_RS04665 9df21cb7195d74a5647431ee8be2a307 311 Gene3D G3DSA:3.40.1130.10 53 234 1.1E-20 T 28-03-2018 AM348_RS04665 9df21cb7195d74a5647431ee8be2a307 311 SUPERFAMILY SSF69593 22 297 4.32E-28 T 28-03-2018 AM348_RS04665 9df21cb7195d74a5647431ee8be2a307 311 SMART SM00563 97 224 3.6E-16 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS04665 9df21cb7195d74a5647431ee8be2a307 311 Pfam PF01553 Acyltransferase 84 238 2.9E-13 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 SUPERFAMILY SSF46785 1 111 1.12E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 Gene3D G3DSA:1.10.10.10 1 84 1.4E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 Gene3D G3DSA:3.40.190.10 177 265 1.3E-21 T 28-03-2018 AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 SUPERFAMILY SSF53850 88 295 3.44E-39 T 28-03-2018 AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 Gene3D G3DSA:3.40.190.10 88 176 7.4E-14 T 28-03-2018 AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 Pfam PF03466 LysR substrate binding domain 88 294 6.8E-40 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS05660 a875079819cb87466fd081189b1da7ef 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.5E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12990 2cb7460fe2cccbd9a6ae4c06b154eb32 94 Pfam PF01386 Ribosomal L25p family 4 91 2.0E-24 T 28-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AM348_RS12990 2cb7460fe2cccbd9a6ae4c06b154eb32 94 SUPERFAMILY SSF50715 1 93 1.22E-30 T 28-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS12990 2cb7460fe2cccbd9a6ae4c06b154eb32 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 28.72 T 28-03-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 AM348_RS12990 2cb7460fe2cccbd9a6ae4c06b154eb32 94 Gene3D G3DSA:2.40.240.10 1 94 5.7E-31 T 28-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS12990 2cb7460fe2cccbd9a6ae4c06b154eb32 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 93 6.0E-43 T 28-03-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 SUPERFAMILY SSF51011 405 491 9.2E-29 T 28-03-2018 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 PIRSF PIRSF001021 1 495 4.3E-211 T 28-03-2018 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 Gene3D G3DSA:3.20.20.80 4 388 4.5E-68 T 28-03-2018 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 SUPERFAMILY SSF51445 6 404 3.71E-89 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 Gene3D G3DSA:2.60.40.1180 407 495 2.0E-31 T 28-03-2018 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 416 491 1.4E-5 T 28-03-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 SMART SM00642 4 402 3.9E-58 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS14465 96e467d0df9f097b95a52a119de0cfc5 495 Pfam PF00128 Alpha amylase, catalytic domain 31 367 5.7E-22 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 Gene3D G3DSA:1.10.10.250 73 141 9.0E-24 T 28-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 SUPERFAMILY SSF54747 3 73 4.06E-30 T 28-03-2018 IPR020784 Ribosomal protein L11, N-terminal AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 4.4E-24 T 28-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.607 T 28-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 28-03-2018 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 Gene3D G3DSA:3.30.1550.10 3 72 1.7E-34 T 28-03-2018 IPR020784 Ribosomal protein L11, N-terminal AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 SUPERFAMILY SSF46906 68 141 1.3E-25 T 28-03-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 1.2E-29 T 28-03-2018 IPR020784 Ribosomal protein L11, N-terminal AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 28-03-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 SMART SM00649 9 141 1.8E-84 T 28-03-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 AM348_RS04000 ed3a30311d90aaac76ad9db94575380c 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 1.1E-65 T 28-03-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS20950 7117e0ae3bf72113ce20e74bada7f624 240 PIRSF PIRSF005426 1 240 5.4E-82 T 28-03-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 AM348_RS20950 7117e0ae3bf72113ce20e74bada7f624 240 Pfam PF00881 Nitroreductase family 9 159 1.3E-17 T 28-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM348_RS20950 7117e0ae3bf72113ce20e74bada7f624 240 Gene3D G3DSA:3.40.109.10 1 240 1.2E-57 T 28-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM348_RS20950 7117e0ae3bf72113ce20e74bada7f624 240 SUPERFAMILY SSF55469 1 239 6.67E-72 T 28-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 SUPERFAMILY SSF90123 11 335 4.84E-57 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 SMART SM00382 375 560 7.4E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 SUPERFAMILY SSF52540 348 582 1.33E-63 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 Pfam PF00664 ABC transporter transmembrane region 26 291 2.0E-50 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 Gene3D G3DSA:3.40.50.300 339 588 6.7E-62 T 28-03-2018 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 Pfam PF00005 ABC transporter 369 513 1.2E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 Gene3D G3DSA:1.20.1560.10 7 338 3.6E-44 T 28-03-2018 AM348_RS20865 c413885fab4b9bc67ea6a44025f96dac 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 2.5E-192 T 28-03-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 Pfam PF13378 Enolase C-terminal domain-like 122 281 1.7E-16 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 SUPERFAMILY SSF54826 1 96 3.65E-28 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 SUPERFAMILY SSF51604 104 312 1.05E-50 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 306 5.7E-124 T 28-03-2018 AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 Gene3D G3DSA:3.20.20.120 109 294 4.5E-39 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 SMART SM00922 114 209 1.9E-13 T 28-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 319 22.942 T 28-03-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS12685 6b7f71ebeb199af59b0b8dd47c5b9f3b 320 Gene3D G3DSA:3.30.390.10 1 108 7.1E-19 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 Gene3D G3DSA:3.30.420.40 214 373 2.0E-29 T 28-03-2018 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 Gene3D G3DSA:3.30.420.40 3 182 2.9E-54 T 28-03-2018 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 SUPERFAMILY SSF53067 66 111 2.03E-27 T 28-03-2018 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 SUPERFAMILY SSF53067 6 36 2.03E-27 T 28-03-2018 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 SUPERFAMILY SSF53067 143 341 2.03E-27 T 28-03-2018 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 42.219 T 28-03-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 AM348_RS18180 91bf7fda3670fd55be7d78cd00f3c800 373 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 367 7.4E-174 T 28-03-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 Gene3D G3DSA:1.10.10.10 2 58 1.0E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 SUPERFAMILY SSF46785 4 62 7.39E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 SMART SM00420 6 58 4.5E-11 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.4E-11 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 SMART SM01134 73 236 2.2E-62 T 28-03-2018 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 Gene3D G3DSA:3.40.50.1360 66 245 9.8E-34 T 28-03-2018 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 Pfam PF00455 DeoR C terminal sensor domain 75 234 2.0E-48 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 SUPERFAMILY SSF100950 75 236 1.73E-26 T 28-03-2018 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 6.3E-6 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS21670 32d65dbd4b87f37f4f7ce6851a349895 268 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 6.3E-6 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 SUPERFAMILY SSF53597 1 159 7.46E-55 T 28-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 PIRSF PIRSF000194 1 159 3.8E-57 T 28-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 28-03-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 Gene3D G3DSA:3.40.430.10 1 159 8.8E-53 T 28-03-2018 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 Pfam PF00186 Dihydrofolate reductase 1 158 1.5E-58 T 28-03-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 PRINTS PR00070 Dihydrofolate reductase signature 27 35 9.8E-15 T 28-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 PRINTS PR00070 Dihydrofolate reductase signature 40 51 9.8E-15 T 28-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 PRINTS PR00070 Dihydrofolate reductase signature 90 104 9.8E-15 T 28-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM348_RS01440 0f21b901c6248f32f2741723590779be 159 PRINTS PR00070 Dihydrofolate reductase signature 13 23 9.8E-15 T 28-03-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 Pfam PF00034 Cytochrome c 340 453 6.9E-7 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 SUPERFAMILY SSF46626 321 460 2.7E-39 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 Pfam PF14376 Haem-binding domain 18 152 5.8E-35 T 28-03-2018 IPR025992 Haem-binding domain AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 SMART SM01235 16 155 3.8E-56 T 28-03-2018 IPR025992 Haem-binding domain AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 Pfam PF03150 Di-haem cytochrome c peroxidase 185 332 5.2E-47 T 28-03-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 Gene3D G3DSA:1.10.760.10 336 462 5.4E-18 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 Gene3D G3DSA:1.10.760.10 174 335 2.0E-42 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 SUPERFAMILY SSF46626 168 320 3.23E-45 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS06425 258b8de23e9b044217fbfe27a7f64a8a 464 Gene3D G3DSA:1.10.760.10 29 173 0.13 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS12820 8106bae776394d772add59a878a38dad 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.1E-18 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 SMART SM00448 4 120 3.8E-15 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12820 8106bae776394d772add59a878a38dad 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 4.0E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 4.0E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 4.0E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 SUPERFAMILY SSF52172 3 135 7.68E-21 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12820 8106bae776394d772add59a878a38dad 216 Pfam PF00072 Response regulator receiver domain 6 120 1.2E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12820 8106bae776394d772add59a878a38dad 216 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.696 T 28-03-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 SMART SM00421 148 205 4.2E-16 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 Gene3D G3DSA:3.40.50.2300 3 131 3.0E-21 T 28-03-2018 AM348_RS12820 8106bae776394d772add59a878a38dad 216 SUPERFAMILY SSF46894 142 207 1.8E-16 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS12820 8106bae776394d772add59a878a38dad 216 Gene3D G3DSA:1.10.10.10 132 215 1.3E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06595 d28964780ef11b37a90200cb75c424ee 158 SUPERFAMILY SSF54637 6 146 8.2E-24 T 28-03-2018 IPR029069 HotDog domain AM348_RS06595 d28964780ef11b37a90200cb75c424ee 158 Pfam PF07977 FabA-like domain 11 135 4.4E-7 T 28-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS06595 d28964780ef11b37a90200cb75c424ee 158 Gene3D G3DSA:3.10.129.10 6 149 2.7E-23 T 28-03-2018 AM348_RS06595 d28964780ef11b37a90200cb75c424ee 158 PIRSF PIRSF020565 1 157 6.4E-51 T 28-03-2018 IPR016776 3-hydroxylacyl-(acyl carrier protein) dehydratase, predicted AM348_RS16905 32466ff6b848be47bfe44a0480058beb 94 SUPERFAMILY SSF56349 1 70 3.83E-11 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS16905 32466ff6b848be47bfe44a0480058beb 94 Pfam PF00589 Phage integrase family 2 71 1.2E-7 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS16905 32466ff6b848be47bfe44a0480058beb 94 Gene3D G3DSA:1.10.443.10 1 90 2.0E-12 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 Gene3D G3DSA:3.40.47.10 256 384 2.6E-32 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 Gene3D G3DSA:3.40.47.10 1 255 4.5E-56 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 5.8E-243 T 28-03-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 SUPERFAMILY SSF53901 1 259 1.15E-78 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 4.5E-146 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 SUPERFAMILY SSF53901 262 386 4.37E-43 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 PIRSF PIRSF000429 1 387 4.4E-132 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 9.9E-50 T 28-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 28-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 28-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 6.8E-87 T 28-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 62.321 T 28-03-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM348_RS04750 794e0b7c59706a158a1b2bfcee7a7872 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 28-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM348_RS22935 843ef3271ce5b621364c9f2e21028cb8 559 Pfam PF02254 TrkA-N domain 421 534 2.0E-24 T 28-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM348_RS22935 843ef3271ce5b621364c9f2e21028cb8 559 Gene3D G3DSA:1.20.91.10 239 319 3.7E-6 T 28-03-2018 AM348_RS22935 843ef3271ce5b621364c9f2e21028cb8 559 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 7.8E-77 T 28-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AM348_RS22935 843ef3271ce5b621364c9f2e21028cb8 559 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.1E-76 T 28-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM348_RS22935 843ef3271ce5b621364c9f2e21028cb8 559 SUPERFAMILY SSF51735 418 550 6.02E-29 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22935 843ef3271ce5b621364c9f2e21028cb8 559 Gene3D G3DSA:3.40.50.720 416 550 9.4E-17 T 28-03-2018 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 1.8E-24 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 65 80 1.8E-24 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 1.8E-24 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 110 123 1.8E-24 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 Gene3D G3DSA:3.40.50.1820 6 288 6.6E-56 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 Pfam PF00561 alpha/beta hydrolase fold 38 273 1.4E-20 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 Hamap MF_01654 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase [mhpC]. 2 287 69.755 T 28-03-2018 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase GO:0005737|GO:0016787|GO:0018771|GO:0019439|GO:0042803 KEGG: 00360+3.7.1.14|MetaCyc: PWY-6690 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 SUPERFAMILY SSF53474 6 286 3.72E-61 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00412 Epoxide hydrolase signature 124 137 3.1E-6 T 28-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00412 Epoxide hydrolase signature 262 284 3.1E-6 T 28-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM348_RS00030 083c2ae00b7ad80b0b7d74b4eceb227d 288 PRINTS PR00412 Epoxide hydrolase signature 65 80 3.1E-6 T 28-03-2018 IPR000639 Epoxide hydrolase-like GO:0003824 AM348_RS14065 8f4942035fe518edd0548d1fd66a6a6c 93 SMART SM00877 4 80 5.4E-36 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14065 8f4942035fe518edd0548d1fd66a6a6c 93 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 22 41 - T 28-03-2018 IPR020808 Bacterial microcompartments protein, conserved site AM348_RS14065 8f4942035fe518edd0548d1fd66a6a6c 93 SUPERFAMILY SSF143414 4 90 7.59E-32 T 28-03-2018 AM348_RS14065 8f4942035fe518edd0548d1fd66a6a6c 93 Pfam PF00936 BMC domain 5 80 1.3E-28 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14065 8f4942035fe518edd0548d1fd66a6a6c 93 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 48 8.0E-20 T 28-03-2018 AM348_RS00385 2ce21981f630412dbce56cb91a75bf6a 225 SUPERFAMILY SSF49354 18 132 9.16E-5 T 28-03-2018 IPR008962 PapD-like AM348_RS00385 2ce21981f630412dbce56cb91a75bf6a 225 Gene3D G3DSA:2.60.40.10 22 147 2.1E-11 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS18230 518e80bdaf739c39591e8e8e4bf58ff7 365 SUPERFAMILY SSF51395 4 364 3.97E-125 T 28-03-2018 AM348_RS18230 518e80bdaf739c39591e8e8e4bf58ff7 365 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 4.3E-93 T 28-03-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 AM348_RS18230 518e80bdaf739c39591e8e8e4bf58ff7 365 Gene3D G3DSA:3.20.20.70 5 365 3.4E-129 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 28-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 3.4E-216 T 28-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 1.0E-48 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 SMART SM01086 317 412 8.6E-35 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 SUPERFAMILY SSF57716 13 48 5.84E-12 T 28-03-2018 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 SUPERFAMILY SSF52540 64 402 4.57E-73 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 395 2.9E-17 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 Gene3D G3DSA:1.10.8.60 317 408 2.5E-33 T 28-03-2018 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 SMART SM00994 12 51 1.0E-24 T 28-03-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.597 T 28-03-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 SMART SM00382 111 264 9.8E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS23200 9f6b03191917d1aae9848198fb633de8 424 Gene3D G3DSA:3.40.50.300 56 315 1.3E-68 T 28-03-2018 AM348_RS19000 a3d5932fcd229ab8d6f8dcca3b83c685 321 PIRSF PIRSF017020 1 321 9.4E-117 T 28-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 AM348_RS19000 a3d5932fcd229ab8d6f8dcca3b83c685 321 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 318 2.3E-134 T 28-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 AM348_RS19000 a3d5932fcd229ab8d6f8dcca3b83c685 321 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 321 149.559 T 28-03-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 AM348_RS19000 a3d5932fcd229ab8d6f8dcca3b83c685 321 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 319 8.2E-68 T 28-03-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 AM348_RS19000 a3d5932fcd229ab8d6f8dcca3b83c685 321 Gene3D G3DSA:3.40.630.10 40 298 2.3E-32 T 28-03-2018 AM348_RS19000 a3d5932fcd229ab8d6f8dcca3b83c685 321 SUPERFAMILY SSF53187 1 319 3.31E-89 T 28-03-2018 AM348_RS00420 db82c71b4fc6217b1c3fd172f533c670 414 Gene3D G3DSA:3.40.50.1820 153 388 1.5E-21 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS00420 db82c71b4fc6217b1c3fd172f533c670 414 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 1.0E-214 T 28-03-2018 IPR010520 UPF0255 family AM348_RS00420 db82c71b4fc6217b1c3fd172f533c670 414 Gene3D G3DSA:1.20.1440.110 49 152 2.2E-23 T 28-03-2018 AM348_RS00420 db82c71b4fc6217b1c3fd172f533c670 414 SUPERFAMILY SSF53474 46 413 2.22E-53 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS00420 db82c71b4fc6217b1c3fd172f533c670 414 Hamap MF_01063 Esterase FrsA [frsA]. 1 414 61.048 T 28-03-2018 IPR010520 UPF0255 family AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 Gene3D G3DSA:3.40.1160.10 7 294 8.5E-55 T 28-03-2018 AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 Pfam PF00583 Acetyltransferase (GNAT) family 337 413 1.2E-6 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 SUPERFAMILY SSF53633 5 291 3.21E-70 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 SUPERFAMILY SSF55729 256 418 1.98E-18 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 9 442 1.6E-197 T 28-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 Gene3D G3DSA:3.40.630.30 297 442 1.5E-20 T 28-03-2018 AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 Pfam PF00696 Amino acid kinase family 26 268 9.7E-33 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 442 234.918 T 28-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AM348_RS09805 71eb942ff5eacc7f40a8d76fc93d9be3 443 PIRSF PIRSF000423 1 442 1.3E-209 T 28-03-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 AM348_RS15645 70eccdcb9581445a77a502bd9f3f5855 176 SMART SM00972 112 173 1.8E-9 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS15645 70eccdcb9581445a77a502bd9f3f5855 176 Pfam PF05229 Spore Coat Protein U domain 28 172 1.0E-20 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 16 602 54.079 T 28-03-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 SUPERFAMILY SSF52540 8 360 1.2E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 Pfam PF13538 UvrD-like helicase C-terminal domain 534 579 1.4E-14 T 28-03-2018 IPR027785 UvrD-like helicase C-terminal domain AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 Pfam PF13604 AAA domain 155 315 1.2E-30 T 28-03-2018 AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 9 602 1.0E-194 T 28-03-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 SUPERFAMILY SSF52540 434 603 1.59E-66 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 SUPERFAMILY SSF52540 281 378 1.59E-66 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 Gene3D G3DSA:3.40.50.300 111 355 8.5E-63 T 28-03-2018 AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 Gene3D G3DSA:3.40.50.300 365 468 4.3E-19 T 28-03-2018 AM348_RS09800 045a4e2ba270f234b03942be508a325e 609 Gene3D G3DSA:3.40.50.300 469 593 3.0E-24 T 28-03-2018 AM348_RS03630 8e241ebd52087c99fbecdc1587bd974d 296 SUPERFAMILY SSF161098 8 296 1.12E-68 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03630 8e241ebd52087c99fbecdc1587bd974d 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 289 7.0E-15 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03630 8e241ebd52087c99fbecdc1587bd974d 296 Gene3D G3DSA:1.10.3720.10 1 283 3.7E-42 T 28-03-2018 AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 Gene3D G3DSA:2.60.40.1760 4 222 1.6E-38 T 28-03-2018 AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 Pfam PF01055 Glycosyl hydrolases family 31 218 670 4.6E-115 T 28-03-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 SUPERFAMILY SSF74650 2 224 2.32E-41 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 Gene3D G3DSA:3.20.20.80 223 607 8.6E-119 T 28-03-2018 AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 SUPERFAMILY SSF51445 226 585 3.51E-66 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 Gene3D G3DSA:2.60.40.1180 608 669 1.9E-28 T 28-03-2018 AM348_RS01600 2878bee4e6c477ea273eef1cc8d3eb74 679 SUPERFAMILY SSF51011 588 669 2.59E-24 T 28-03-2018 AM348_RS16430 6704ecf87a71f4eb584fd48bcc569697 292 SMART SM00481 10 77 1.6E-18 T 28-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AM348_RS16430 6704ecf87a71f4eb584fd48bcc569697 292 SUPERFAMILY SSF89550 172 284 1.28E-51 T 28-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM348_RS16430 6704ecf87a71f4eb584fd48bcc569697 292 SUPERFAMILY SSF89550 9 90 1.28E-51 T 28-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM348_RS16430 6704ecf87a71f4eb584fd48bcc569697 292 Pfam PF02811 PHP domain 11 174 2.4E-7 T 28-03-2018 IPR004013 PHP domain GO:0003824 AM348_RS16430 6704ecf87a71f4eb584fd48bcc569697 292 Gene3D G3DSA:3.20.20.140 9 264 6.7E-39 T 28-03-2018 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 Gene3D G3DSA:3.30.63.10 48 81 1.9E-26 T 28-03-2018 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 38.184 T 28-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 Pfam PF00625 Guanylate kinase 5 186 4.8E-69 T 28-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 Gene3D G3DSA:3.40.50.300 3 47 0.0014 T 28-03-2018 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 3.7E-75 T 28-03-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 28-03-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 SUPERFAMILY SSF52540 3 189 4.35E-71 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 Gene3D G3DSA:3.40.50.300 82 188 5.4E-36 T 28-03-2018 AM348_RS05805 912c792ad746be5791ca62617c8fe58c 207 SMART SM00072 3 187 3.1E-87 T 28-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AM348_RS05355 6db2fac57bb0867c40620d8275d3ba35 393 Hamap MF_01530 Multidrug resistance protein MdtL [mdtL]. 1 391 38.129 T 28-03-2018 IPR023697 Multidrug resistance protein MdtL GO:0005215|GO:0005886 AM348_RS05355 6db2fac57bb0867c40620d8275d3ba35 393 SUPERFAMILY SSF103473 3 386 7.46E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05355 6db2fac57bb0867c40620d8275d3ba35 393 Pfam PF07690 Major Facilitator Superfamily 10 342 3.8E-41 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05355 6db2fac57bb0867c40620d8275d3ba35 393 Gene3D G3DSA:1.20.1250.20 193 393 2.8E-11 T 28-03-2018 AM348_RS05355 6db2fac57bb0867c40620d8275d3ba35 393 Gene3D G3DSA:1.20.1250.20 1 192 2.8E-32 T 28-03-2018 AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 Pfam PF00581 Rhodanese-like domain 165 270 5.7E-11 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 Pfam PF00581 Rhodanese-like domain 9 128 3.6E-19 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 Gene3D G3DSA:3.40.250.10 1 154 4.4E-34 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 ProSitePatterns PS00683 Rhodanese C-terminal signature. 259 269 - T 28-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 Gene3D G3DSA:3.40.250.10 156 280 4.1E-26 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 SUPERFAMILY SSF52821 3 152 8.12E-41 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 ProSitePatterns PS00380 Rhodanese signature 1. 42 53 - T 28-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 SMART SM00450 7 132 1.2E-27 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 SMART SM00450 155 275 1.0E-23 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS11555 7a758ba832ca001e129d346f3a6902e8 281 SUPERFAMILY SSF52821 165 279 1.83E-33 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 322 343 - T 28-03-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 Gene3D G3DSA:3.40.605.10 2 237 2.4E-42 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 9 405 4.6E-190 T 28-03-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 415 41.255 T 28-03-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 SUPERFAMILY SSF53720 3 414 1.44E-113 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 Gene3D G3DSA:3.40.605.10 238 416 1.5E-37 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 Pfam PF00171 Aldehyde dehydrogenase family 8 280 2.3E-15 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS00400 fe02e9efc8e78b75557c8a792686b1c2 416 PIRSF PIRSF000151 1 416 1.1E-172 T 28-03-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 AM348_RS07765 50b19b4694a8dbd05758776ff50ca3d4 655 Pfam PF04632 Fusaric acid resistance protein family 11 652 3.2E-160 T 28-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 AM348_RS07765 50b19b4694a8dbd05758776ff50ca3d4 655 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 3 653 54.948 T 28-03-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0006810 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 1.5E-268 T 28-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 Gene3D G3DSA:3.40.140.20 226 375 6.4E-56 T 28-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 4.1E-120 T 28-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 Gene3D G3DSA:3.40.50.1380 1 196 4.3E-79 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 Gene3D G3DSA:3.40.140.20 376 519 9.6E-53 T 28-03-2018 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 PIRSF PIRSF000414 1 529 8.2E-229 T 28-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 SMART SM00798 137 461 2.6E-217 T 28-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.663 T 28-03-2018 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 Pfam PF02142 MGS-like domain 19 132 4.1E-30 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 SUPERFAMILY SSF52335 7 197 1.7E-72 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 SMART SM00851 19 132 5.6E-63 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS03865 a460a9576a7fecf1452f988a2cef11c9 529 SUPERFAMILY SSF53927 221 529 1.4E-130 T 28-03-2018 IPR016193 Cytidine deaminase-like GO:0003824 AM348_RS04565 7a3473d59c4ca574ac6e2dfdd853855f 290 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 16 287 23.648 T 28-03-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial AM348_RS04565 7a3473d59c4ca574ac6e2dfdd853855f 290 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 275 9.9E-105 T 28-03-2018 IPR017039 Virulence factor BrkB AM348_RS04565 7a3473d59c4ca574ac6e2dfdd853855f 290 Pfam PF03631 Virulence factor BrkB 29 274 3.9E-58 T 28-03-2018 IPR017039 Virulence factor BrkB AM348_RS04565 7a3473d59c4ca574ac6e2dfdd853855f 290 PIRSF PIRSF035875 1 290 2.1E-74 T 28-03-2018 IPR017039 Virulence factor BrkB AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 Gene3D G3DSA:2.60.120.10 20 90 7.3E-5 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 Pfam PF12833 Helix-turn-helix domain 175 250 1.4E-16 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 Gene3D G3DSA:1.10.10.60 125 201 2.4E-6 T 28-03-2018 AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 SUPERFAMILY SSF51182 30 151 1.38E-8 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 Gene3D G3DSA:1.10.10.60 202 254 1.5E-8 T 28-03-2018 AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 SUPERFAMILY SSF46689 206 253 7.62E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS17145 7d27ebe19f5b89d0dcf4b66e103d2c29 259 SMART SM00342 169 251 9.1E-14 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS14930 13e9f46e071cab5a518b7c6debc8804a 83 Pfam PF10964 Protein of unknown function (DUF2766) 1 78 7.4E-47 T 28-03-2018 IPR020262 Uncharacterised protein family YecJ AM348_RS14930 13e9f46e071cab5a518b7c6debc8804a 83 ProDom PD060536 YECJ YPO1738 1 77 1.0E-34 T 28-03-2018 IPR020262 Uncharacterised protein family YecJ AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 Gene3D G3DSA:3.30.420.40 1 119 3.5E-39 T 28-03-2018 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 1 493 55.568 T 28-03-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 Gene3D G3DSA:1.10.3210.10 323 458 5.2E-4 T 28-03-2018 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 SUPERFAMILY SSF53067 6 127 1.97E-36 T 28-03-2018 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 SUPERFAMILY SSF109604 306 492 1.26E-45 T 28-03-2018 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 SUPERFAMILY SSF53067 131 299 9.25E-41 T 28-03-2018 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 Gene3D G3DSA:3.30.420.150 120 298 9.1E-35 T 28-03-2018 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 PIRSF PIRSF001267 1 493 1.1E-184 T 28-03-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 AM348_RS05065 c96b73f9c95cd64c600ce46e7609fed0 493 Pfam PF02541 Ppx/GppA phosphatase family 20 300 1.7E-99 T 28-03-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AM348_RS17895 1d8aa5d56c93794c7c7de85ee7d9deb4 417 Gene3D G3DSA:1.20.1250.20 34 224 4.1E-33 T 28-03-2018 AM348_RS17895 1d8aa5d56c93794c7c7de85ee7d9deb4 417 Pfam PF07690 Major Facilitator Superfamily 41 260 1.1E-26 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17895 1d8aa5d56c93794c7c7de85ee7d9deb4 417 SUPERFAMILY SSF103473 28 413 2.35E-63 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17895 1d8aa5d56c93794c7c7de85ee7d9deb4 417 Gene3D G3DSA:1.20.1250.20 225 415 1.6E-14 T 28-03-2018 AM348_RS17895 1d8aa5d56c93794c7c7de85ee7d9deb4 417 ProSitePatterns PS00216 Sugar transport proteins signature 1. 91 107 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS02475 150140428b3377b74d150e8bb7203a0b 325 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 35 288 1.4E-63 T 28-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 AM348_RS02475 150140428b3377b74d150e8bb7203a0b 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 310 5.8E-71 T 28-03-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 AM348_RS02475 150140428b3377b74d150e8bb7203a0b 325 PIRSF PIRSF006470 1 325 8.0E-99 T 28-03-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 1.5E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.5E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 1.5E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 2.1E-63 T 28-03-2018 IPR010976 Beta-phosphoglucomutase hydrolase AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 5.4E-28 T 28-03-2018 IPR023214 HAD-like domain AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 SUPERFAMILY SSF56784 5 185 3.2E-44 T 28-03-2018 IPR023214 HAD-like domain AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 Gene3D G3DSA:1.10.150.240 18 75 5.1E-13 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 Gene3D G3DSA:3.40.50.1000 76 186 3.3E-22 T 28-03-2018 IPR023214 HAD-like domain AM348_RS10540 c5ddbe043fdfb4b931199fc69b16de69 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 121 183 2.7E-14 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Gene3D G3DSA:3.30.2070.10 794 834 1.9E-5 T 28-03-2018 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 4 40 1.4E-15 T 28-03-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Gene3D G3DSA:4.10.1200.10 1 26 3.8E-14 T 28-03-2018 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 776 793 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Gene3D G3DSA:3.40.50.740 108 213 0.005 T 28-03-2018 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1234 0.0 T 28-03-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 SMART SM00926 43 105 6.6E-8 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Gene3D G3DSA:2.40.40.20 1047 1237 1.1E-46 T 28-03-2018 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Gene3D G3DSA:3.40.228.10 225 659 2.5E-104 T 28-03-2018 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Pfam PF00384 Molybdopterin oxidoreductase 108 831 1.3E-169 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Gene3D G3DSA:2.20.25.90 55 98 1.3E-28 T 28-03-2018 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 Pfam PF01568 Molydopterin dinucleotide binding domain 1087 1199 1.7E-20 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 SUPERFAMILY SSF50692 1081 1235 1.76E-46 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS17335 cc0e020fe6b169e0dcddad4de0366735 1246 SUPERFAMILY SSF53706 5 1070 0.0 T 28-03-2018 AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 ProSitePatterns PS00942 glpT family of transporters signature. 151 167 - T 28-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 SUPERFAMILY SSF103473 17 441 1.29E-77 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 Gene3D G3DSA:1.20.1250.20 237 442 3.3E-27 T 28-03-2018 AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 Pfam PF07690 Major Facilitator Superfamily 35 396 3.7E-49 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 2.3E-154 T 28-03-2018 AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 PIRSF PIRSF002808 6 442 3.4E-152 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS05555 4e595f27cdfdc6c251249cda57c0db78 442 Gene3D G3DSA:1.20.1250.20 19 212 7.3E-32 T 28-03-2018 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 28-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 327 1.2E-35 T 28-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 Gene3D G3DSA:3.40.50.720 116 300 7.9E-52 T 28-03-2018 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 SUPERFAMILY SSF51735 102 298 1.79E-56 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 SUPERFAMILY SSF52283 2 135 7.18E-46 T 28-03-2018 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 3.2E-53 T 28-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 Gene3D G3DSA:3.40.50.720 2 115 1.3E-29 T 28-03-2018 AM348_RS16815 c852ffebabd1cb9469c4bce349972e1e 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 Gene3D G3DSA:3.20.20.150 1 173 1.2E-65 T 28-03-2018 AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 Gene3D G3DSA:3.20.20.150 174 391 2.4E-48 T 28-03-2018 AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 SUPERFAMILY SSF51658 1 133 3.2E-79 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 SUPERFAMILY SSF51658 163 383 3.2E-79 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 1.1E-164 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 PIRSF PIRSF016049 1 392 2.2E-185 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 394 225.508 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS02095 2d2f09e766e1fbf00773fd9e2a0a4071 394 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 394 4.7E-233 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Pfam PF01584 CheW-like domain 440 570 3.5E-17 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Gene3D G3DSA:3.40.50.2300 586 710 8.4E-33 T 28-03-2018 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SUPERFAMILY SSF52172 591 709 6.83E-32 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SMART SM00387 291 435 3.8E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 350 3.1E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 432 3.1E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 412 3.1E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 3.1E-10 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Gene3D G3DSA:3.30.565.10 262 448 2.1E-23 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 294 433 1.9E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Gene3D G3DSA:1.10.287.560 165 261 4.0E-6 T 28-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SUPERFAMILY SSF55874 248 432 7.33E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SUPERFAMILY SSF50341 434 568 2.09E-21 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SUPERFAMILY SSF47226 7 112 2.09E-21 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SMART SM01231 165 246 0.0018 T 28-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Pfam PF01627 Hpt domain 10 98 4.7E-13 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Gene3D G3DSA:2.30.30.40 522 568 1.2E-8 T 28-03-2018 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SMART SM00073 4 102 2.5E-17 T 28-03-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Pfam PF00072 Response regulator receiver domain 593 705 2.4E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Gene3D G3DSA:1.20.120.160 1 147 1.4E-24 T 28-03-2018 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SMART SM00448 591 705 1.1E-30 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 167 233 3.1E-5 T 28-03-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 SMART SM00260 427 568 5.1E-7 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS10260 0d9337f4ed6983a1b9f3fb1bb054127e 710 Gene3D G3DSA:2.40.50.180 452 521 1.2E-5 T 28-03-2018 AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 Gene3D G3DSA:3.10.450.70 19 79 2.2E-22 T 28-03-2018 AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 76 2.0E-15 T 28-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 SUPERFAMILY SSF52833 87 233 6.62E-43 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 Gene3D G3DSA:3.40.30.10 94 237 1.1E-29 T 28-03-2018 AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 Pfam PF13098 Thioredoxin-like domain 105 227 2.9E-29 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS09510 c83f5ab8382337b1dc98040d55643fb9 237 SUPERFAMILY SSF54423 23 81 4.45E-18 T 28-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AM348_RS08560 b2eb719517a4b0fd7f9373ffff4dbb4b 117 SUPERFAMILY SSF52968 2 116 2.75E-33 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS08560 b2eb719517a4b0fd7f9373ffff4dbb4b 117 Pfam PF02288 Dehydratase medium subunit 6 113 8.2E-24 T 28-03-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor AM348_RS08560 b2eb719517a4b0fd7f9373ffff4dbb4b 117 Gene3D G3DSA:3.40.50.10150 5 114 8.3E-30 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS08560 b2eb719517a4b0fd7f9373ffff4dbb4b 117 PIRSF PIRSF011503 1 116 4.6E-41 T 28-03-2018 IPR009192 Diol/glycerol dehydratase reactivating factor, small subunit AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 SUPERFAMILY SSF46689 64 113 4.26E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 Gene3D G3DSA:1.10.10.60 1 64 6.7E-19 T 28-03-2018 AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 64 106 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 SUPERFAMILY SSF46689 11 61 8.96E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 Pfam PF12833 Helix-turn-helix domain 34 110 5.4E-18 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 Gene3D G3DSA:1.10.10.60 65 129 2.5E-14 T 28-03-2018 AM348_RS17730 9b3d269b470e81b0430bdeae668046f8 129 SMART SM00342 27 110 3.0E-31 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Gene3D G3DSA:3.90.1170.30 1 43 3.0E-9 T 28-03-2018 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Gene3D G3DSA:3.90.1170.30 146 246 2.6E-22 T 28-03-2018 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Gene3D G3DSA:3.90.1170.30 44 145 5.3E-23 T 28-03-2018 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 SUPERFAMILY SSF52777 391 632 7.56E-80 T 28-03-2018 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Pfam PF02817 e3 binding domain 329 364 3.9E-15 T 28-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 402 632 5.4E-79 T 28-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 SUPERFAMILY SSF51230 206 297 1.57E-23 T 28-03-2018 IPR011053 Single hybrid motif AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Pfam PF00364 Biotin-requiring enzyme 4 73 1.5E-21 T 28-03-2018 IPR000089 Biotin/lipoyl attachment AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Pfam PF00364 Biotin-requiring enzyme 206 276 6.7E-22 T 28-03-2018 IPR000089 Biotin/lipoyl attachment AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Pfam PF00364 Biotin-requiring enzyme 107 176 4.8E-22 T 28-03-2018 IPR000089 Biotin/lipoyl attachment AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 SUPERFAMILY SSF51230 105 197 1.07E-23 T 28-03-2018 IPR011053 Single hybrid motif AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Gene3D G3DSA:3.30.559.10 389 633 9.2E-79 T 28-03-2018 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 SUPERFAMILY SSF51230 1 94 8.25E-23 T 28-03-2018 IPR011053 Single hybrid motif AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 189 633 1.2E-228 T 28-03-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 SUPERFAMILY SSF47005 323 368 3.79E-13 T 28-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 28-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Gene3D G3DSA:4.10.320.10 328 383 2.6E-20 T 28-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 128 157 - T 28-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 228 257 - T 28-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM348_RS01085 2b56e0e786f5a63ea235b211b7697e31 633 Gene3D G3DSA:2.40.50.100 247 327 3.2E-9 T 28-03-2018 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 SUPERFAMILY SSF47384 194 271 2.75E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 SUPERFAMILY SSF55874 261 423 6.55E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 7.3E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 7.3E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 7.3E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 7.3E-13 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 422 1.2E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 Gene3D G3DSA:3.30.565.10 260 425 2.8E-31 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 Pfam PF00672 HAMP domain 166 206 2.2E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 SMART SM00387 315 425 9.9E-33 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 270 6.4E-8 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 SMART SM00304 158 210 5.2E-7 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 Gene3D G3DSA:1.10.287.130 201 259 6.1E-10 T 28-03-2018 AM348_RS18030 b9d37c735a73f5f0dafbad18c5d44c55 433 SMART SM00388 211 271 1.7E-8 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 SUPERFAMILY SSF51735 123 285 1.23E-52 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.689 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 2.5E-39 T 28-03-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 Gene3D G3DSA:3.40.50.720 141 264 4.9E-39 T 28-03-2018 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 28-03-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 2.5E-88 T 28-03-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 Gene3D G3DSA:3.40.50.10860 11 140 9.1E-50 T 28-03-2018 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 279 3.2E-68 T 28-03-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 28-03-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 AM348_RS22735 318bc52b2a4436a4c9e1278bbd6b86ac 288 SUPERFAMILY SSF53223 3 122 5.56E-40 T 28-03-2018 AM348_RS02565 b7c0d5df02240ec0abdd65bfa7e2154d 450 Pfam PF01523 Putative modulator of DNA gyrase 36 326 8.6E-61 T 28-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM348_RS02565 b7c0d5df02240ec0abdd65bfa7e2154d 450 Gene3D G3DSA:3.30.2290.10 10 236 2.0E-60 T 28-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain AM348_RS02565 b7c0d5df02240ec0abdd65bfa7e2154d 450 SUPERFAMILY SSF111283 17 449 6.02E-132 T 28-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 TIGRFAM TIGR00131 gal_kin: galactokinase 5 382 2.8E-172 T 28-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 SUPERFAMILY SSF55060 205 380 4.8E-52 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00959 Mevalonate kinase family signature 25 49 7.1E-46 T 28-03-2018 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00959 Mevalonate kinase family signature 119 141 7.1E-46 T 28-03-2018 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00959 Mevalonate kinase family signature 162 181 7.1E-46 T 28-03-2018 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00959 Mevalonate kinase family signature 328 345 7.1E-46 T 28-03-2018 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 28-03-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PIRSF PIRSF000530 1 382 4.5E-124 T 28-03-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 Hamap MF_00246 Galactokinase [galK]. 25 381 45.586 T 28-03-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 Pfam PF00288 GHMP kinases N terminal domain 114 181 4.6E-14 T 28-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00473 Galactokinase signature 92 103 4.5E-30 T 28-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00473 Galactokinase signature 263 277 4.5E-30 T 28-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00473 Galactokinase signature 27 45 4.5E-30 T 28-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 PRINTS PR00473 Galactokinase signature 112 130 4.5E-30 T 28-03-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 SUPERFAMILY SSF54211 3 203 2.13E-64 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 28-03-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 Pfam PF10509 Galactokinase galactose-binding signature 10 57 8.9E-22 T 28-03-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 Gene3D G3DSA:3.30.70.890 207 381 1.3E-57 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 Pfam PF08544 GHMP kinases C terminal 279 361 1.1E-12 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS21470 290bfb22fa269e7c24de13917e4b891f 382 Gene3D G3DSA:3.30.230.10 2 206 6.1E-59 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS13725 9203a0dd226769355190256cd470bbd7 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 125 157 8.5E-6 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS13725 9203a0dd226769355190256cd470bbd7 184 SUPERFAMILY SSF51161 20 181 1.52E-38 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS13725 9203a0dd226769355190256cd470bbd7 184 Gene3D G3DSA:2.160.10.10 23 183 1.3E-30 T 28-03-2018 AM348_RS13725 9203a0dd226769355190256cd470bbd7 184 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 133 161 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS13725 9203a0dd226769355190256cd470bbd7 184 TIGRFAM TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF 1 180 1.1E-118 T 28-03-2018 IPR024005 Colanic acid biosynthesis, acetyltransferase, WcaF AM348_RS10665 96bdf164e8a00b34619c06b2adf19727 175 Pfam PF00581 Rhodanese-like domain 9 99 5.0E-13 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS10665 96bdf164e8a00b34619c06b2adf19727 175 Pfam PF11127 Protein of unknown function (DUF2892) 115 167 5.5E-12 T 28-03-2018 IPR021309 Protein of unknown function DUF2892 AM348_RS10665 96bdf164e8a00b34619c06b2adf19727 175 Gene3D G3DSA:3.40.250.10 2 122 4.0E-23 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS10665 96bdf164e8a00b34619c06b2adf19727 175 SUPERFAMILY SSF52821 2 153 5.11E-28 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS10665 96bdf164e8a00b34619c06b2adf19727 175 SMART SM00450 6 102 4.8E-15 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 SMART SM00642 127 521 1.4E-85 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 SUPERFAMILY SSF81296 11 103 9.1E-7 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 1 104 1.0E-7 T 28-03-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 Gene3D G3DSA:2.60.40.10 5 112 2.5E-9 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 Gene3D G3DSA:2.60.40.1180 524 604 2.8E-10 T 28-03-2018 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 PIRSF PIRSF036918 1 602 1.8E-239 T 28-03-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 SUPERFAMILY SSF51011 530 603 5.14E-9 T 28-03-2018 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 Gene3D G3DSA:3.20.20.80 115 523 1.4E-86 T 28-03-2018 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 Pfam PF00128 Alpha amylase, catalytic domain 177 493 9.9E-88 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS23410 e710cb40fa7dd387d5e11b5faef8af4b 605 SUPERFAMILY SSF51445 116 530 2.2E-87 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS04880 7182738dd6fe2712e2b0e760a288d6fb 155 Pfam PF03061 Thioesterase superfamily 57 145 6.3E-18 T 28-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM348_RS04880 7182738dd6fe2712e2b0e760a288d6fb 155 Gene3D G3DSA:3.10.129.10 7 154 2.6E-28 T 28-03-2018 AM348_RS04880 7182738dd6fe2712e2b0e760a288d6fb 155 SUPERFAMILY SSF54637 11 154 6.17E-25 T 28-03-2018 IPR029069 HotDog domain AM348_RS04880 7182738dd6fe2712e2b0e760a288d6fb 155 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 153 1.3E-14 T 28-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Pfam PF00689 Cation transporting ATPase, C-terminus 726 892 6.6E-15 T 28-03-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SUPERFAMILY SSF81653 172 274 5.23E-28 T 28-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Pfam PF00702 haloacid dehalogenase-like hydrolase 371 657 3.5E-20 T 28-03-2018 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SMART SM00831 48 121 6.1E-6 T 28-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 39 902 0.0 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 377 383 - T 28-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Pfam PF00122 E1-E2 ATPase 163 355 4.5E-46 T 28-03-2018 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SUPERFAMILY SSF81660 344 547 1.44E-42 T 28-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 305 324 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 751 764 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 856 877 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 288 304 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 701 716 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 409 422 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 719 730 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 771 787 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 PRINTS PR01836 Magnesium-transporting ATPase signature 806 827 3.6E-85 T 28-03-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SUPERFAMILY SSF81665 276 369 1.7E-104 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SUPERFAMILY SSF81665 692 900 1.7E-104 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SUPERFAMILY SSF81665 51 159 1.7E-104 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Gene3D G3DSA:3.40.1110.10 338 550 1.7E-40 T 28-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 127 411 8.5E-40 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 611 732 3.4E-31 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Gene3D G3DSA:1.20.1110.10 566 897 4.5E-58 T 28-03-2018 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 SUPERFAMILY SSF56784 536 687 3.38E-37 T 28-03-2018 IPR023214 HAD-like domain AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Pfam PF00690 Cation transporter/ATPase, N-terminus 53 116 7.4E-14 T 28-03-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 AM348_RS02480 964d0e9c87d8d6bf7868a43ca704eb7e 902 Gene3D G3DSA:2.70.150.10 59 276 3.9E-45 T 28-03-2018 AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 SUPERFAMILY SSF53474 250 329 1.05E-34 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 SUPERFAMILY SSF53474 30 167 1.05E-34 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 Pfam PF12146 Serine aminopeptidase, S33 52 312 1.4E-57 T 28-03-2018 IPR022742 Serine aminopeptidase, S33 AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 Gene3D G3DSA:3.40.50.1820 24 337 6.5E-34 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 PRINTS PR00111 Alpha/beta hydrolase fold signature 81 96 3.6E-5 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 PRINTS PR00111 Alpha/beta hydrolase fold signature 262 276 3.6E-5 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 PRINTS PR00111 Alpha/beta hydrolase fold signature 135 148 3.6E-5 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS04850 d815a31a405deea3445d0ef2c2b98367 338 PRINTS PR00111 Alpha/beta hydrolase fold signature 149 162 3.6E-5 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 35 729 3.0E-291 T 28-03-2018 IPR017750 ATPase, type I secretion system AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 Pfam PF00664 ABC transporter transmembrane region 188 445 2.8E-19 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 Pfam PF00005 ABC transporter 516 665 7.2E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 SUPERFAMILY SSF52540 488 722 5.43E-75 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 Gene3D G3DSA:1.20.1560.10 167 485 1.2E-28 T 28-03-2018 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 Gene3D G3DSA:3.40.50.300 486 730 1.0E-66 T 28-03-2018 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 ProSitePatterns PS00211 ABC transporters family signature. 637 651 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 SUPERFAMILY SSF90123 172 477 2.75E-45 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 Gene3D G3DSA:3.90.70.10 30 157 1.4E-14 T 28-03-2018 AM348_RS10195 631a64999f12f7324b5e0c8613608167 734 SMART SM00382 525 711 2.2E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15010 d4bf4c393e548293be63320cb2709fd9 167 SMART SM00260 14 151 2.1E-48 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS15010 d4bf4c393e548293be63320cb2709fd9 167 SUPERFAMILY SSF50341 16 156 8.89E-40 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS15010 d4bf4c393e548293be63320cb2709fd9 167 Gene3D G3DSA:2.30.30.40 100 145 3.5E-17 T 28-03-2018 AM348_RS15010 d4bf4c393e548293be63320cb2709fd9 167 Gene3D G3DSA:2.40.50.180 35 99 2.4E-19 T 28-03-2018 AM348_RS15010 d4bf4c393e548293be63320cb2709fd9 167 Pfam PF01584 CheW-like domain 18 154 2.1E-36 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 Gene3D G3DSA:1.10.10.10 1 64 1.0E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 Gene3D G3DSA:3.40.50.1360 67 240 1.2E-30 T 28-03-2018 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 SMART SM00420 5 57 9.1E-20 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 Pfam PF00455 DeoR C terminal sensor domain 76 232 1.6E-44 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 SUPERFAMILY SSF100950 76 234 1.67E-28 T 28-03-2018 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 ProSitePatterns PS00894 DeoR-type HTH domain signature. 5 39 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 23 37 5.4E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 37 55 5.4E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 SUPERFAMILY SSF46785 4 59 1.6E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 SMART SM01134 74 234 1.3E-51 T 28-03-2018 AM348_RS09870 3f2d17836ecbecdfd212223bae2e27c8 242 Pfam PF08220 DeoR-like helix-turn-helix domain 5 60 4.5E-19 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS23120 45832fff2be576d622b3f772547d3664 428 Pfam PF00909 Ammonium Transporter Family 33 426 8.8E-130 T 28-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AM348_RS23120 45832fff2be576d622b3f772547d3664 428 ProSitePatterns PS01219 Ammonium transporters signature. 182 207 - T 28-03-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 AM348_RS23120 45832fff2be576d622b3f772547d3664 428 SUPERFAMILY SSF111352 27 407 2.09E-128 T 28-03-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 AM348_RS23120 45832fff2be576d622b3f772547d3664 428 TIGRFAM TIGR00836 amt: ammonium transporter 31 426 1.4E-138 T 28-03-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 AM348_RS23120 45832fff2be576d622b3f772547d3664 428 Gene3D G3DSA:1.10.3430.10 23 407 9.0E-133 T 28-03-2018 AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 Gene3D G3DSA:3.20.20.100 2 284 3.9E-82 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 PRINTS PR00069 Aldo-keto reductase signature 127 144 9.1E-20 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 PRINTS PR00069 Aldo-keto reductase signature 97 115 9.1E-20 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 PRINTS PR00069 Aldo-keto reductase signature 41 65 9.1E-20 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 PRINTS PR00069 Aldo-keto reductase signature 206 230 9.1E-20 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 Pfam PF00248 Aldo/keto reductase family 17 271 2.0E-56 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 SUPERFAMILY SSF51430 9 273 1.31E-78 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 PIRSF PIRSF000097 1 122 2.4E-18 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS19175 c7e54029dd6449a7074dc3604ca86d93 284 PIRSF PIRSF000097 115 274 1.3E-25 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Pfam PF16331 TolA binding protein trimerisation 37 108 8.1E-23 T 28-03-2018 IPR032519 YbgF, trimerisation domain GO:0070206 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Gene3D G3DSA:1.25.40.10 227 263 1.0E-5 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 SUPERFAMILY SSF48452 141 253 2.8E-14 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Gene3D G3DSA:1.20.5.50 35 81 5.1E-5 T 28-03-2018 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Pfam PF13432 Tetratricopeptide repeat 159 200 5.9E-5 T 28-03-2018 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Gene3D G3DSA:1.25.40.10 138 190 0.0023 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Gene3D G3DSA:1.25.40.10 191 226 6.1E-6 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 144 260 2.0E-40 T 28-03-2018 IPR014162 Cell division coordinator CpoB, C-terminal AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 263 19.974 T 28-03-2018 IPR034706 Cell division coordinator CpoB GO:0051301 AM348_RS21535 5361bf8d0ecf9168421f8fce8f89d46e 263 Pfam PF13174 Tetratricopeptide repeat 218 250 3.3E-7 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 SMART SM00419 201 249 2.8E-13 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 207 223 2.4E-12 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 223 238 2.4E-12 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 Gene3D G3DSA:2.60.120.10 38 179 2.2E-19 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 SUPERFAMILY SSF46785 179 259 2.19E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 SUPERFAMILY SSF51206 37 176 1.44E-31 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 SMART SM00100 44 165 2.9E-22 T 28-03-2018 IPR000595 Cyclic nucleotide-binding domain AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 Pfam PF13545 Crp-like helix-turn-helix domain 182 254 8.1E-16 T 28-03-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 ProSitePatterns PS00042 Crp-type HTH domain signature. 209 232 - T 28-03-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 Pfam PF00027 Cyclic nucleotide-binding domain 65 146 1.1E-15 T 28-03-2018 IPR000595 Cyclic nucleotide-binding domain AM348_RS16725 2b5dd05080723300fc7531ea596d742c 264 Gene3D G3DSA:1.10.10.10 180 264 1.1E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08990 760d40ed2536a2ae8b054150762da265 392 Pfam PF03916 Polysulphide reductase, NrfD 45 329 2.5E-18 T 28-03-2018 IPR005614 NrfD family AM348_RS08990 760d40ed2536a2ae8b054150762da265 392 Gene3D G3DSA:1.20.1630.10 41 336 5.9E-41 T 28-03-2018 AM348_RS18995 3afb06429f8ae3aea2af91ca7562f60f 161 PIRSF PIRSF034445 1 156 5.6E-30 T 28-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM348_RS18995 3afb06429f8ae3aea2af91ca7562f60f 161 Pfam PF07813 LTXXQ motif family protein 45 141 4.0E-23 T 28-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 1.9E-6 T 28-03-2018 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 161 178 1.9E-6 T 28-03-2018 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 1.9E-6 T 28-03-2018 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 Pfam PF13488 Glycine zipper 37 85 4.4E-13 T 28-03-2018 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 Pfam PF00691 OmpA family 115 210 6.3E-22 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 Gene3D G3DSA:3.30.1330.60 83 220 4.3E-41 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 PRINTS PR01021 OMPA domain signature 146 161 5.3E-13 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 PRINTS PR01021 OMPA domain signature 161 177 5.3E-13 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 PRINTS PR01021 OMPA domain signature 116 138 5.3E-13 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 ProSitePatterns PS01068 OmpA-like domain. 148 192 - T 28-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AM348_RS06240 0dceeeb4216e58a1332bb18d13661088 220 SUPERFAMILY SSF103088 103 218 7.72E-38 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS07260 38fea01b8292b9138854149173d11b8a 203 Gene3D G3DSA:3.10.50.40 1 164 1.3E-29 T 28-03-2018 AM348_RS07260 38fea01b8292b9138854149173d11b8a 203 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 3.9E-9 T 28-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM348_RS07260 38fea01b8292b9138854149173d11b8a 203 SUPERFAMILY SSF54534 2 140 3.14E-33 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 7.1E-39 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 28-03-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.4E-10 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 1.4E-10 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 SUPERFAMILY SSF46977 444 584 1.05E-45 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 Gene3D G3DSA:3.50.50.60 2 447 1.7E-63 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 SUPERFAMILY SSF51905 361 415 5.77E-72 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 SUPERFAMILY SSF51905 3 250 5.77E-72 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 Pfam PF00890 FAD binding domain 7 397 1.5E-114 T 28-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.4E-5 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 1.4E-5 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 3.6E-248 T 28-03-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 PIRSF PIRSF000171 1 576 4.8E-42 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 Gene3D G3DSA:1.20.58.100 448 550 5.4E-26 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 Gene3D G3DSA:4.10.80.40 551 576 2.1E-13 T 28-03-2018 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 SUPERFAMILY SSF56425 227 358 2.84E-42 T 28-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02965 e0dbd1ba63fe3182b76134c6c70aae63 596 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 28-03-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 AM348_RS18720 2a6fd5b127c9d666126c488e009f1be0 411 Gene3D G3DSA:1.20.1250.20 5 188 1.5E-23 T 28-03-2018 AM348_RS18720 2a6fd5b127c9d666126c488e009f1be0 411 Pfam PF07690 Major Facilitator Superfamily 18 336 3.4E-27 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS18720 2a6fd5b127c9d666126c488e009f1be0 411 SUPERFAMILY SSF103473 8 392 3.01E-41 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18720 2a6fd5b127c9d666126c488e009f1be0 411 Gene3D G3DSA:1.20.1250.20 206 401 4.4E-14 T 28-03-2018 AM348_RS13040 51f08aa5b0004d1f631bdddfd47dfdd2 519 SUPERFAMILY SSF141868 268 514 3.53E-72 T 28-03-2018 IPR001633 EAL domain AM348_RS13040 51f08aa5b0004d1f631bdddfd47dfdd2 519 Pfam PF00563 EAL domain 268 501 1.7E-67 T 28-03-2018 IPR001633 EAL domain AM348_RS13040 51f08aa5b0004d1f631bdddfd47dfdd2 519 Gene3D G3DSA:3.20.20.450 261 517 4.9E-76 T 28-03-2018 IPR001633 EAL domain AM348_RS13040 51f08aa5b0004d1f631bdddfd47dfdd2 519 Pfam PF12792 CSS motif domain associated with EAL 42 240 3.5E-41 T 28-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM348_RS13040 51f08aa5b0004d1f631bdddfd47dfdd2 519 SMART SM00052 261 506 7.2E-98 T 28-03-2018 IPR001633 EAL domain AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 SMART SM00448 11 121 4.3E-37 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 SUPERFAMILY SSF52172 6 137 9.82E-38 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 Gene3D G3DSA:1.10.10.10 132 239 6.9E-27 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 231 1.6E-23 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 SMART SM00862 156 232 2.2E-25 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 Gene3D G3DSA:3.40.50.2300 4 131 1.3E-32 T 28-03-2018 AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 Pfam PF00072 Response regulator receiver domain 13 121 1.4E-23 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS13615 86d82a202a5fb5183b8dec5bf4e58416 240 SUPERFAMILY SSF46894 142 234 6.8E-26 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SUPERFAMILY SSF81901 295 450 6.54E-36 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SUPERFAMILY SSF81901 205 302 2.22E-14 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SUPERFAMILY SSF81901 33 222 2.53E-40 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 329 359 3.7E-8 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 251 285 0.0046 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 288 323 3.6E-6 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 362 395 4.2E-8 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 396 422 3.0E-4 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 154 202 4.1 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 118 152 9.7E-10 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 206 218 16.0 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 45 80 9.6E-4 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Pfam PF08238 Sel1 repeat 81 116 8.8E-9 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 45 80 2.4E-6 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 324 359 1.7E-9 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 286 323 3.2E-7 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 81 116 1.7E-10 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 250 285 6.0E-7 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 396 431 7.5E-6 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 117 152 2.8E-12 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 360 395 5.0E-10 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 SMART SM00671 153 203 77.0 T 28-03-2018 IPR006597 Sel1-like repeat AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Gene3D G3DSA:2.60.40.1180 177 236 0.16 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Gene3D G3DSA:2.60.40.1180 303 351 4.3E-15 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Gene3D G3DSA:2.60.40.1180 352 470 1.0E-30 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Gene3D G3DSA:2.60.40.1180 22 106 1.3E-19 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Gene3D G3DSA:2.60.40.1180 237 302 3.0E-15 T 28-03-2018 AM348_RS10845 cfb5e0568336646c61c672ec42c18d71 470 Gene3D G3DSA:2.60.40.1180 107 176 1.1E-21 T 28-03-2018 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 SMART SM00382 288 432 7.6E-6 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 Pfam PF02954 Bacterial regulatory protein, Fis family 539 578 8.5E-7 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 Gene3D G3DSA:1.10.8.60 442 509 6.2E-21 T 28-03-2018 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 482 491 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 SUPERFAMILY SSF52540 268 502 4.93E-68 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 Gene3D G3DSA:1.10.10.60 510 582 4.2E-13 T 28-03-2018 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 Pfam PF00158 Sigma-54 interaction domain 268 435 1.2E-70 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 Gene3D G3DSA:3.40.50.300 261 440 6.0E-27 T 28-03-2018 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 SUPERFAMILY SSF55781 34 140 7.85E-5 T 28-03-2018 IPR029016 GAF domain-like AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 292 305 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 SUPERFAMILY SSF46689 482 582 2.19E-6 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 355 370 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS10850 5dd700b7af7611779fa5bc08aa418f5f 582 Gene3D G3DSA:3.30.450.20 145 248 4.8E-4 T 28-03-2018 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 SUPERFAMILY SSF47413 3 52 7.31E-10 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 Gene3D G3DSA:3.40.50.2300 164 326 8.5E-44 T 28-03-2018 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 Gene3D G3DSA:1.10.260.40 4 63 1.8E-13 T 28-03-2018 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 SUPERFAMILY SSF53822 76 324 3.64E-56 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 Pfam PF13377 Periplasmic binding protein-like domain 165 324 3.0E-34 T 28-03-2018 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 Gene3D G3DSA:3.40.50.2300 64 163 6.0E-18 T 28-03-2018 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 SMART SM00354 4 70 2.7E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS04755 ea145a79a52e91301df39b825bb5dd2a 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 48 2.8E-10 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS10810 8a7d6843e7de4b9f7df960deeed329ba 338 Gene3D G3DSA:3.90.25.10 180 338 1.7E-41 T 28-03-2018 AM348_RS10810 8a7d6843e7de4b9f7df960deeed329ba 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 1.1E-61 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS10810 8a7d6843e7de4b9f7df960deeed329ba 338 Gene3D G3DSA:3.40.50.720 1 179 1.8E-34 T 28-03-2018 AM348_RS10810 8a7d6843e7de4b9f7df960deeed329ba 338 SUPERFAMILY SSF51735 1 336 9.32E-100 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS10810 8a7d6843e7de4b9f7df960deeed329ba 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 3.4E-135 T 28-03-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-70370 AM348_RS06465 1427518244a3b6e5d6bd7ad8c7dd176d 145 Pfam PF00582 Universal stress protein family 3 138 2.6E-21 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS06465 1427518244a3b6e5d6bd7ad8c7dd176d 145 PIRSF PIRSF006276 1 141 4.2E-54 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS06465 1427518244a3b6e5d6bd7ad8c7dd176d 145 Gene3D G3DSA:3.40.50.620 2 142 1.2E-26 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS06465 1427518244a3b6e5d6bd7ad8c7dd176d 145 SUPERFAMILY SSF52402 3 139 1.59E-32 T 28-03-2018 AM348_RS23115 995e1941ca8fe85ccc19aebe822972df 286 SUPERFAMILY SSF54637 116 284 1.5E-55 T 28-03-2018 IPR029069 HotDog domain AM348_RS23115 995e1941ca8fe85ccc19aebe822972df 286 SUPERFAMILY SSF54637 5 114 1.28E-42 T 28-03-2018 IPR029069 HotDog domain AM348_RS23115 995e1941ca8fe85ccc19aebe822972df 286 Gene3D G3DSA:3.10.129.10 2 116 7.0E-44 T 28-03-2018 AM348_RS23115 995e1941ca8fe85ccc19aebe822972df 286 Gene3D G3DSA:3.10.129.10 131 286 2.8E-51 T 28-03-2018 AM348_RS23115 995e1941ca8fe85ccc19aebe822972df 286 Pfam PF13622 Thioesterase-like superfamily 33 282 4.3E-58 T 28-03-2018 AM348_RS23115 995e1941ca8fe85ccc19aebe822972df 286 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 3.2E-102 T 28-03-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247 AM348_RS19005 2121e90442ac149e7a8d43cb9d02c5cb 447 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 441 58.282 T 28-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM348_RS19005 2121e90442ac149e7a8d43cb9d02c5cb 447 Gene3D G3DSA:3.75.10.20 2 441 1.1E-217 T 28-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM348_RS19005 2121e90442ac149e7a8d43cb9d02c5cb 447 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 4 440 6.7E-236 T 28-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM348_RS19005 2121e90442ac149e7a8d43cb9d02c5cb 447 Pfam PF04996 Succinylarginine dihydrolase 3 440 2.9E-211 T 28-03-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 AM348_RS19005 2121e90442ac149e7a8d43cb9d02c5cb 447 SUPERFAMILY SSF55909 3 441 4.71E-203 T 28-03-2018 AM348_RS09370 5758efd8f41087acfb8446c76bc7fc50 331 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 17 323 1.8E-128 T 28-03-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS09370 5758efd8f41087acfb8446c76bc7fc50 331 Gene3D G3DSA:3.40.50.300 52 262 4.7E-33 T 28-03-2018 AM348_RS09370 5758efd8f41087acfb8446c76bc7fc50 331 Gene3D G3DSA:1.20.5.170 6 50 1.7E-15 T 28-03-2018 AM348_RS09370 5758efd8f41087acfb8446c76bc7fc50 331 SUPERFAMILY SSF52540 5 321 2.29E-87 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS09370 5758efd8f41087acfb8446c76bc7fc50 331 Pfam PF03308 ArgK protein 22 293 2.3E-113 T 28-03-2018 AM348_RS09370 5758efd8f41087acfb8446c76bc7fc50 331 Gene3D G3DSA:1.10.287.130 264 325 3.2E-15 T 28-03-2018 AM348_RS03140 6472f7134b829e5404fdd6cabf113902 446 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 6 376 5.7E-150 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS03140 6472f7134b829e5404fdd6cabf113902 446 PIRSF PIRSF004539 1 444 1.3E-196 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS03140 6472f7134b829e5404fdd6cabf113902 446 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 443 1.6E-200 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 426 5.5E-49 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 PIRSF PIRSF036426 1 457 5.7E-204 T 28-03-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 51.058 T 28-03-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 SUPERFAMILY SSF53790 215 456 3.14E-78 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 SUPERFAMILY SSF51735 2 112 9.0E-27 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 SUPERFAMILY SSF75615 114 206 1.57E-27 T 28-03-2018 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 1.7E-91 T 28-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Gene3D G3DSA:3.40.1010.10 215 340 5.7E-35 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 1.2E-8 T 28-03-2018 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Gene3D G3DSA:3.40.50.720 3 120 6.0E-19 T 28-03-2018 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Gene3D G3DSA:3.30.950.10 341 457 6.8E-39 T 28-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 2.0E-19 T 28-03-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Gene3D G3DSA:3.30.160.110 121 148 1.2E-16 T 28-03-2018 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Pfam PF13241 Putative NAD(P)-binding 6 115 7.5E-25 T 28-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 6.9E-70 T 28-03-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS07125 ced3180e0f1bb45c21afce705fc7a485 457 Gene3D G3DSA:1.10.8.210 151 209 2.9E-20 T 28-03-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS13985 929d26da915e35108746f52b07b35174 184 SUPERFAMILY SSF143414 95 181 1.28E-23 T 28-03-2018 AM348_RS13985 929d26da915e35108746f52b07b35174 184 SUPERFAMILY SSF143414 3 93 6.93E-25 T 28-03-2018 AM348_RS13985 929d26da915e35108746f52b07b35174 184 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 95 158 5.0E-28 T 28-03-2018 AM348_RS13985 929d26da915e35108746f52b07b35174 184 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 66 7.0E-27 T 28-03-2018 AM348_RS13985 929d26da915e35108746f52b07b35174 184 SMART SM00877 3 77 2.5E-27 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS13985 929d26da915e35108746f52b07b35174 184 SMART SM00877 95 173 7.3E-28 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS13985 929d26da915e35108746f52b07b35174 184 PIRSF PIRSF034834 1 183 1.5E-81 T 28-03-2018 IPR011238 Polyhedral organelle shell protein PduT AM348_RS13985 929d26da915e35108746f52b07b35174 184 Pfam PF00936 BMC domain 96 173 1.5E-21 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS13985 929d26da915e35108746f52b07b35174 184 Pfam PF00936 BMC domain 4 76 1.1E-21 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 Gene3D G3DSA:3.40.1410.10 78 242 1.9E-27 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.5E-8 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.5E-8 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 SUPERFAMILY SSF46785 3 72 5.13E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 Gene3D G3DSA:1.10.10.10 1 76 1.7E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 SUPERFAMILY SSF64288 56 238 3.93E-30 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 Pfam PF07702 UTRA domain 99 231 1.8E-15 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 SMART SM00345 9 68 2.0E-17 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 SMART SM00866 91 232 2.5E-16 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS21245 1179ddb62dd137e0bbe21c0feb7f9954 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 6.0E-19 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS15710 2d370eb7dee3da9c23c016ebfb80093c 93 Pfam PF10762 Protein of unknown function (DUF2583) 1 86 2.5E-45 T 28-03-2018 IPR019698 Protein of unknown function DUF2583 AM348_RS13940 8ec2c6b7489e2748368217d6bfe7ddc5 255 SUPERFAMILY SSF81342 56 244 6.83E-24 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS13940 8ec2c6b7489e2748368217d6bfe7ddc5 255 Gene3D G3DSA:1.20.950.20 50 253 2.7E-30 T 28-03-2018 AM348_RS13940 8ec2c6b7489e2748368217d6bfe7ddc5 255 Pfam PF01292 Prokaryotic cytochrome b561 59 239 9.7E-22 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 Gene3D G3DSA:1.20.1250.20 235 438 2.8E-20 T 28-03-2018 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 Gene3D G3DSA:1.20.1250.20 19 234 1.0E-23 T 28-03-2018 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 ProSitePatterns PS00216 Sugar transport proteins signature 1. 308 325 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 Pfam PF07690 Major Facilitator Superfamily 261 434 5.6E-12 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 Pfam PF00083 Sugar (and other) transporter 24 226 3.5E-24 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 30 425 1.3E-151 T 28-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM348_RS06380 7b9d8ac8ccbf22f24ca0be3ac3825883 440 SUPERFAMILY SSF103473 18 439 4.05E-64 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Hamap MF_01587 DNA ligase B [ligB]. 5 557 50.192 T 28-03-2018 IPR020923 DNA ligase B GO:0003911|GO:0006259 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 SUPERFAMILY SSF50249 311 388 2.91E-17 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 SUPERFAMILY SSF47781 402 552 1.11E-15 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 125 154 - T 28-03-2018 IPR018239 NAD-dependent DNA ligase, active site AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Gene3D G3DSA:1.10.150.20 409 539 6.8E-5 T 28-03-2018 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 314 387 5.2E-18 T 28-03-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Gene3D G3DSA:3.30.470.30 129 256 1.2E-17 T 28-03-2018 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 SUPERFAMILY SSF56091 25 307 7.34E-66 T 28-03-2018 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 SMART SM00532 29 426 2.1E-92 T 28-03-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Gene3D G3DSA:1.10.287.610 23 92 2.7E-13 T 28-03-2018 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Gene3D G3DSA:2.40.50.140 309 381 8.5E-16 T 28-03-2018 AM348_RS05810 39a7be29fbc78ce9848dd6888f54a95c 559 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 30 285 7.7E-29 T 28-03-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 AM348_RS08655 b3097eca0a8d6aa91c5fe0d4526d399e 106 SUPERFAMILY SSF51278 1 104 9.29E-47 T 28-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08655 b3097eca0a8d6aa91c5fe0d4526d399e 106 Pfam PF00699 Urease beta subunit 3 99 1.1E-43 T 28-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08655 b3097eca0a8d6aa91c5fe0d4526d399e 106 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 30.909 T 28-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08655 b3097eca0a8d6aa91c5fe0d4526d399e 106 Gene3D G3DSA:2.10.150.10 1 101 3.7E-45 T 28-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08655 b3097eca0a8d6aa91c5fe0d4526d399e 106 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 102 1.4E-44 T 28-03-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Gene3D G3DSA:2.40.240.10 348 462 1.0E-47 T 28-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Gene3D G3DSA:2.40.240.10 463 548 3.5E-33 T 28-03-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 SUPERFAMILY SSF50715 340 548 7.85E-80 T 28-03-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 SUPERFAMILY SSF52374 11 337 5.91E-103 T 28-03-2018 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 2.4E-9 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 2.4E-9 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 2.4E-9 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 2.4E-9 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 6.6E-127 T 28-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Gene3D G3DSA:1.10.1160.10 261 338 2.6E-36 T 28-03-2018 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Gene3D G3DSA:3.40.50.620 42 154 6.5E-38 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Gene3D G3DSA:3.40.50.620 155 260 2.5E-22 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Gene3D G3DSA:3.40.50.620 7 41 0.14 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 54.012 T 28-03-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 552 0.0 T 28-03-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 529 4.1E-64 T 28-03-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 AM348_RS21940 b4dbc1888ab11cee1d07d20a777e2151 555 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 SUPERFAMILY SSF51905 17 187 6.22E-66 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 SUPERFAMILY SSF51905 274 388 6.22E-66 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 Hamap MF_01652 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase [mhpA]. 7 554 66.773 T 28-03-2018 IPR023786 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase GO:0008688|GO:0019622|GO:0055114 KEGG: 00360+1.14.13.127|KEGG: 00362+1.14.13.12|KEGG: 00627+1.14.13.12|MetaCyc: PWY-6690 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 6.4E-37 T 28-03-2018 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 6.4E-37 T 28-03-2018 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 338 6.4E-37 T 28-03-2018 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 166 181 6.4E-37 T 28-03-2018 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 354 6.4E-37 T 28-03-2018 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 17 39 6.4E-37 T 28-03-2018 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 Gene3D G3DSA:3.50.50.60 11 508 2.9E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00040 a5cb1994ae95465a42eaa0db1268d7b1 554 Pfam PF01494 FAD binding domain 16 352 2.1E-82 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 133 150 - T 28-03-2018 IPR006061 Solute-binding family 1, conserved site GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 SUPERFAMILY SSF53850 29 395 7.91E-96 T 28-03-2018 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 Pfam PF01547 Bacterial extracellular solute-binding protein 45 314 1.6E-41 T 28-03-2018 IPR006059 Solute-binding family 1 GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 Gene3D G3DSA:3.40.190.10 31 154 1.8E-19 T 28-03-2018 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 Gene3D G3DSA:3.40.190.10 155 396 5.0E-39 T 28-03-2018 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 357 376 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 299 320 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 70 88 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 130 149 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 233 252 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 151 170 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 171 190 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS03620 51c772948596c81235fe9e87bb6f2db5 396 PRINTS PR00181 Maltose binding protein signature 36 54 3.0E-99 T 28-03-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0006810 AM348_RS09535 e26c97317a70668944902f6f2919d0fc 252 Pfam PF01551 Peptidase family M23 146 239 5.1E-31 T 28-03-2018 IPR016047 Peptidase M23 AM348_RS09535 e26c97317a70668944902f6f2919d0fc 252 SUPERFAMILY SSF51261 41 243 1.57E-47 T 28-03-2018 IPR011055 Duplicated hybrid motif AM348_RS09535 e26c97317a70668944902f6f2919d0fc 252 Gene3D G3DSA:2.70.70.10 95 246 2.2E-37 T 28-03-2018 AM348_RS09535 e26c97317a70668944902f6f2919d0fc 252 Gene3D G3DSA:3.10.350.10 28 94 3.5E-18 T 28-03-2018 AM348_RS09535 e26c97317a70668944902f6f2919d0fc 252 Pfam PF01476 LysM domain 42 84 1.4E-16 T 28-03-2018 IPR018392 LysM domain AM348_RS09535 e26c97317a70668944902f6f2919d0fc 252 SMART SM00257 41 85 2.1E-17 T 28-03-2018 IPR018392 LysM domain AM348_RS05675 204a622cf25f0b49b56baeed6bd33e0e 280 Pfam PF00486 Transcriptional regulatory protein, C terminal 56 122 1.3E-5 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS05675 204a622cf25f0b49b56baeed6bd33e0e 280 SUPERFAMILY SSF46894 42 123 8.5E-9 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS05675 204a622cf25f0b49b56baeed6bd33e0e 280 Gene3D G3DSA:1.10.10.10 21 130 8.1E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05675 204a622cf25f0b49b56baeed6bd33e0e 280 SMART SM00862 46 123 2.3E-6 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS05915 f9d507896f619a2f16b19ccf8909f30f 368 SUPERFAMILY SSF53756 43 367 3.45E-59 T 28-03-2018 AM348_RS05915 f9d507896f619a2f16b19ccf8909f30f 368 Gene3D G3DSA:3.40.50.2000 197 368 2.9E-30 T 28-03-2018 AM348_RS05915 f9d507896f619a2f16b19ccf8909f30f 368 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 168 332 2.3E-24 T 28-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM348_RS05915 f9d507896f619a2f16b19ccf8909f30f 368 Gene3D G3DSA:3.40.50.2000 35 194 2.5E-24 T 28-03-2018 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 Gene3D G3DSA:3.40.50.150 11 290 1.0E-61 T 28-03-2018 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 Pfam PF01555 DNA methylase 34 250 6.1E-52 T 28-03-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 33 47 2.4E-36 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 68 88 2.4E-36 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 214 232 2.4E-36 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 237 257 2.4E-36 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 195 212 2.4E-36 T 28-03-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 37 43 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS07640 3227bc0704d239c2ebb5284efe2d2a5f 294 SUPERFAMILY SSF53335 14 257 9.95E-63 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 Pfam PF00355 Rieske [2Fe-2S] domain 112 164 1.9E-11 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 Gene3D G3DSA:1.20.5.510 9 38 3.9E-8 T 28-03-2018 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 12 45 4.4E-6 T 28-03-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 SUPERFAMILY SSF50022 36 176 1.83E-30 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 PRINTS PR00162 Rieske 2Fe-2S subunit signature 117 128 5.8E-12 T 28-03-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 PRINTS PR00162 Rieske 2Fe-2S subunit signature 150 162 5.8E-12 T 28-03-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 PRINTS PR00162 Rieske 2Fe-2S subunit signature 138 150 5.8E-12 T 28-03-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 14 175 1.9E-44 T 28-03-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 AM348_RS20305 3e245537f96f65a502ec72d0bf500f57 183 Gene3D G3DSA:2.102.10.10 39 183 3.1E-30 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS09730 0bd714c542243b7304ced6a93e785f2a 237 Pfam PF03741 Integral membrane protein TerC family 17 203 1.5E-52 T 28-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 Hamap MF_01533 HTH-type transcriptional activator RhaR [rhaR]. 1 282 49.829 T 28-03-2018 IPR023699 Transcription activator HTH, RhaR GO:0003700|GO:0005737|GO:0019299|GO:0045893 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 Gene3D G3DSA:2.60.120.280 8 166 3.5E-20 T 28-03-2018 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 Gene3D G3DSA:1.10.10.60 237 281 4.6E-12 T 28-03-2018 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 SMART SM00342 192 275 1.0E-28 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 Gene3D G3DSA:1.10.10.60 177 236 9.2E-6 T 28-03-2018 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 SUPERFAMILY SSF51215 27 162 2.22E-15 T 28-03-2018 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 259 1.5E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 275 1.5E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 SUPERFAMILY SSF46689 228 276 3.63E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 Pfam PF12833 Helix-turn-helix domain 199 275 5.2E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS04430 6a74a5fbc922b83a9a614fc652455f4e 282 Pfam PF02311 AraC-like ligand binding domain 22 150 9.6E-21 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 Pfam PF00701 Dihydrodipicolinate synthetase family 7 265 2.1E-49 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 SUPERFAMILY SSF51569 9 293 9.63E-68 T 28-03-2018 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 PIRSF PIRSF001365 2 298 3.3E-63 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 136 167 - T 28-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 Gene3D G3DSA:3.20.20.70 2 296 1.7E-72 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 7.9E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 7.9E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 7.9E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 7.9E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS04410 3c8a6647e6fb63b92c7a042ab2f7b7ac 298 SMART SM01130 6 298 6.5E-71 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS20230 e2aff9cf8b14a201dfdb92bcc044ede7 626 Gene3D G3DSA:2.60.40.1250 16 152 6.4E-7 T 28-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM348_RS20230 e2aff9cf8b14a201dfdb92bcc044ede7 626 Pfam PF13899 Thioredoxin-like 511 591 4.0E-14 T 28-03-2018 AM348_RS20230 e2aff9cf8b14a201dfdb92bcc044ede7 626 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 282 488 7.9E-9 T 28-03-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 AM348_RS20230 e2aff9cf8b14a201dfdb92bcc044ede7 626 Pfam PF11412 Disulphide bond corrector protein DsbC 42 141 4.1E-17 T 28-03-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain AM348_RS20230 e2aff9cf8b14a201dfdb92bcc044ede7 626 Gene3D G3DSA:3.40.30.10 499 610 5.7E-10 T 28-03-2018 AM348_RS20230 e2aff9cf8b14a201dfdb92bcc044ede7 626 SUPERFAMILY SSF52833 505 613 2.6E-11 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS13245 60196baf38db92f7588f503f15b4cfcc 134 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 23.799 T 28-03-2018 IPR022957 Uncharacterised protein family UPF0299 AM348_RS13245 60196baf38db92f7588f503f15b4cfcc 134 Pfam PF03788 LrgA family 23 113 1.2E-28 T 28-03-2018 IPR005538 LrgA/CidA family GO:0016021 AM348_RS15560 ddf77e5088cc849248442e67cb0666a4 244 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 3 239 30.008 T 28-03-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 AM348_RS15560 ddf77e5088cc849248442e67cb0666a4 244 Pfam PF07317 Flagellar regulator YcgR 8 109 4.4E-29 T 28-03-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal AM348_RS15560 ddf77e5088cc849248442e67cb0666a4 244 Gene3D G3DSA:2.40.10.220 111 244 5.4E-16 T 28-03-2018 AM348_RS15560 ddf77e5088cc849248442e67cb0666a4 244 Gene3D G3DSA:2.30.110.10 9 110 4.3E-26 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS15560 ddf77e5088cc849248442e67cb0666a4 244 Pfam PF07238 PilZ domain 112 230 1.6E-7 T 28-03-2018 IPR009875 PilZ domain GO:0035438 AM348_RS09100 c4b6658dcf01b172e920d62f6f4d7cba 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 4.6E-62 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS09100 c4b6658dcf01b172e920d62f6f4d7cba 172 Pfam PF05638 Type VI secretion system effector, Hcp 8 155 1.4E-31 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS09100 c4b6658dcf01b172e920d62f6f4d7cba 172 Gene3D G3DSA:2.30.110.20 2 172 5.3E-48 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS09100 c4b6658dcf01b172e920d62f6f4d7cba 172 SUPERFAMILY SSF141452 3 168 4.05E-38 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS14450 3ee66204766ce5067aac3c93ef2e04c6 77 SUPERFAMILY SSF64307 2 77 2.75E-24 T 28-03-2018 IPR001455 TusA-like domain AM348_RS14450 3ee66204766ce5067aac3c93ef2e04c6 77 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 10 34 - T 28-03-2018 IPR001455 TusA-like domain AM348_RS14450 3ee66204766ce5067aac3c93ef2e04c6 77 Gene3D G3DSA:3.30.110.40 5 77 6.8E-22 T 28-03-2018 IPR001455 TusA-like domain AM348_RS14450 3ee66204766ce5067aac3c93ef2e04c6 77 Pfam PF01206 Sulfurtransferase TusA 9 77 1.2E-19 T 28-03-2018 IPR001455 TusA-like domain AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Pfam PF08264 Anticodon-binding domain of tRNA 701 822 2.6E-16 T 28-03-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.303 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 SUPERFAMILY SSF47323 662 859 1.85E-37 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 2.0E-78 T 28-03-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 572 2.9E-7 T 28-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 651 9.7E-7 T 28-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 171 1.4E-25 T 28-03-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 SUPERFAMILY SSF50677 226 415 3.87E-57 T 28-03-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 SUPERFAMILY SSF52374 416 668 1.19E-140 T 28-03-2018 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 SUPERFAMILY SSF52374 5 226 1.19E-140 T 28-03-2018 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Gene3D G3DSA:1.10.730.10 648 796 3.5E-31 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 4.1E-52 T 28-03-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Gene3D G3DSA:3.40.50.620 1 233 1.3E-77 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Gene3D G3DSA:3.40.50.620 403 647 4.4E-58 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22075 a366beec99b4887ce0d36f83bdd3ad42 860 Gene3D G3DSA:3.90.740.10 234 402 4.4E-54 T 28-03-2018 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 Gene3D G3DSA:3.30.280.10 2 99 4.6E-47 T 28-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 PIRSF PIRSF001223 1 100 2.4E-50 T 28-03-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 SUPERFAMILY SSF54111 1 99 3.92E-45 T 28-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 1.2E-50 T 28-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.757 T 28-03-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 Pfam PF00547 Urease, gamma subunit 1 99 2.5E-46 T 28-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08660 bb7d3ddbd558c671a7824864981ed056 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 2.0E-44 T 28-03-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS13500 6b752f577bac439a017b5264bcef821f 107 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.808 T 28-03-2018 IPR002765 Uncharacterised protein family UPF0145 AM348_RS13500 6b752f577bac439a017b5264bcef821f 107 Pfam PF01906 Putative heavy-metal-binding 1 104 2.3E-40 T 28-03-2018 IPR002765 Uncharacterised protein family UPF0145 AM348_RS13500 6b752f577bac439a017b5264bcef821f 107 SUPERFAMILY SSF117782 1 106 3.14E-38 T 28-03-2018 IPR002765 Uncharacterised protein family UPF0145 AM348_RS13500 6b752f577bac439a017b5264bcef821f 107 Gene3D G3DSA:3.30.110.70 1 105 4.6E-37 T 28-03-2018 IPR035439 Uncharacterised protein family UPF0145/C2CD5 Reactome: R-HSA-1445148 AM348_RS16370 aeb9a0c3daff68d083ba3c9a6405a97e 179 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 1.1E-73 T 28-03-2018 IPR006008 Intracellular septation protein A GO:0016021 AM348_RS16370 aeb9a0c3daff68d083ba3c9a6405a97e 179 Pfam PF04279 Intracellular septation protein A 1 175 6.4E-72 T 28-03-2018 IPR006008 Intracellular septation protein A GO:0016021 AM348_RS16370 aeb9a0c3daff68d083ba3c9a6405a97e 179 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.265 T 28-03-2018 IPR006008 Intracellular septation protein A GO:0016021 AM348_RS02385 5ab17f9a4db2a33cee27afc10d400bc9 147 SUPERFAMILY SSF102400 1 145 9.42E-46 T 28-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AM348_RS02385 5ab17f9a4db2a33cee27afc10d400bc9 147 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 141 1.2E-37 T 28-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AM348_RS02385 5ab17f9a4db2a33cee27afc10d400bc9 147 Gene3D G3DSA:3.40.50.10110 1 147 9.0E-51 T 28-03-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 AM348_RS00510 a1b576263179a5d9bb43bce044461421 182 Gene3D G3DSA:2.60.40.1090 30 182 8.2E-27 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00510 a1b576263179a5d9bb43bce044461421 182 SUPERFAMILY SSF49401 32 181 4.03E-34 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00510 a1b576263179a5d9bb43bce044461421 182 Pfam PF00419 Fimbrial protein 35 181 1.2E-13 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 Gene3D G3DSA:3.30.420.40 2 186 1.3E-34 T 28-03-2018 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 SMART SM00842 10 196 3.0E-96 T 28-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 420 29.547 T 28-03-2018 IPR020823 Cell division protein FtsA GO:0007049 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 2.6E-161 T 28-03-2018 IPR020823 Cell division protein FtsA GO:0007049 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 5.3E-30 T 28-03-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 Pfam PF14450 Cell division protein FtsA 207 381 8.9E-25 T 28-03-2018 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 Gene3D G3DSA:3.30.420.40 197 247 1.8E-6 T 28-03-2018 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 Gene3D G3DSA:3.90.640.10 248 300 3.9E-19 T 28-03-2018 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 PIRSF PIRSF003101 2 420 1.7E-152 T 28-03-2018 IPR020823 Cell division protein FtsA GO:0007049 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 SUPERFAMILY SSF53067 8 221 6.15E-61 T 28-03-2018 AM348_RS01190 e64b4c537ba827d8bf6fde7da46e6287 420 SUPERFAMILY SSF53067 198 384 1.91E-47 T 28-03-2018 AM348_RS12570 3f4711458663bcb96f4590d71ebdb194 405 Gene3D G3DSA:3.90.1150.10 281 405 6.6E-21 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS12570 3f4711458663bcb96f4590d71ebdb194 405 Gene3D G3DSA:3.40.640.10 53 280 8.0E-51 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS12570 3f4711458663bcb96f4590d71ebdb194 405 Pfam PF00155 Aminotransferase class I and II 35 385 3.2E-47 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS12570 3f4711458663bcb96f4590d71ebdb194 405 SUPERFAMILY SSF53383 7 401 2.34E-94 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 ProSitePatterns PS00894 DeoR-type HTH domain signature. 11 45 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 SUPERFAMILY SSF46785 9 74 1.51E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 SMART SM00420 11 63 5.3E-24 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 43 61 7.2E-13 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 29 43 7.2E-13 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 Pfam PF00455 DeoR C terminal sensor domain 80 237 3.1E-46 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 Pfam PF08220 DeoR-like helix-turn-helix domain 11 66 1.6E-23 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 SUPERFAMILY SSF100950 80 239 1.2E-26 T 28-03-2018 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 Gene3D G3DSA:3.40.50.1360 77 235 3.1E-37 T 28-03-2018 AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 Gene3D G3DSA:1.10.10.10 7 76 4.3E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04610 386ed30f6a152eb4bf4a91e0b0ec3fc5 262 SMART SM01134 77 238 7.2E-59 T 28-03-2018 AM348_RS05220 349b43294c876eaaf5fbc786e992da87 483 Pfam PF05762 VWA domain containing CoxE-like protein 307 458 7.4E-11 T 28-03-2018 IPR008912 Uncharacterised protein family CoxE-like AM348_RS05220 349b43294c876eaaf5fbc786e992da87 483 Gene3D G3DSA:3.40.50.410 298 464 3.7E-19 T 28-03-2018 IPR002035 von Willebrand factor, type A AM348_RS05220 349b43294c876eaaf5fbc786e992da87 483 SMART SM00327 319 483 3.4E-11 T 28-03-2018 IPR002035 von Willebrand factor, type A AM348_RS05220 349b43294c876eaaf5fbc786e992da87 483 SUPERFAMILY SSF53300 318 459 4.96E-18 T 28-03-2018 IPR002035 von Willebrand factor, type A AM348_RS05220 349b43294c876eaaf5fbc786e992da87 483 Hamap MF_01626 Protein ViaA [viaA]. 1 483 58.814 T 28-03-2018 IPR023481 Uncharacterised protein family ViaA AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 9.0E-159 T 28-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 28-03-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:3.90.1100.10 430 645 2.2E-80 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:3.90.1100.10 646 713 2.2E-14 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.2E-27 T 28-03-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 SUPERFAMILY SSF64484 343 939 0.0 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 SUPERFAMILY SSF64484 12 226 0.0 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 SUPERFAMILY SSF64484 1039 1341 0.0 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.322 T 28-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 28-03-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:2.40.50.100 715 795 1.6E-27 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 1.9E-27 T 28-03-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:3.90.1110.10 148 429 3.0E-67 T 28-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:2.40.50.150 814 949 8.3E-29 T 28-03-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:3.90.1800.10 1267 1313 7.2E-12 T 28-03-2018 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 28-03-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 2.3E-58 T 28-03-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Gene3D G3DSA:2.40.270.10 1020 1242 5.3E-80 T 28-03-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 224 2.6E-7 T 28-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS03975 ffadb92aeed52b83a61f4897735de113 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 340 454 1.3E-15 T 28-03-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 AM348_RS10740 57d46053b10876b9ad8092b3b21de3e5 325 PIRSF PIRSF017082 2 325 3.7E-76 T 28-03-2018 IPR005064 Bordetella uptake gene GO:0030288 AM348_RS10740 57d46053b10876b9ad8092b3b21de3e5 325 Gene3D G3DSA:3.40.190.10 123 233 5.0E-11 T 28-03-2018 AM348_RS10740 57d46053b10876b9ad8092b3b21de3e5 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 111 312 2.7E-18 T 28-03-2018 IPR005064 Bordetella uptake gene GO:0030288 AM348_RS10740 57d46053b10876b9ad8092b3b21de3e5 325 SUPERFAMILY SSF53850 61 275 3.8E-7 T 28-03-2018 AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 Pfam PF00462 Glutaredoxin 4 63 4.0E-24 T 28-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 Gene3D G3DSA:3.40.30.10 3 83 2.3E-27 T 28-03-2018 AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 SUPERFAMILY SSF52833 1 83 9.34E-29 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 1.9E-36 T 28-03-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 28-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 PRINTS PR00160 Glutaredoxin signature 4 22 9.7E-18 T 28-03-2018 IPR014025 Glutaredoxin subgroup AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 PRINTS PR00160 Glutaredoxin signature 46 59 9.7E-18 T 28-03-2018 IPR014025 Glutaredoxin subgroup AM348_RS05975 37a9f2e3027e3cc638a100d97b853fc4 83 PRINTS PR00160 Glutaredoxin signature 60 73 9.7E-18 T 28-03-2018 IPR014025 Glutaredoxin subgroup AM348_RS02410 7432b2606ddc4d74c27319cbf25b5796 141 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 31.902 T 28-03-2018 IPR016716 Regulator of ribonuclease activity B AM348_RS02410 7432b2606ddc4d74c27319cbf25b5796 141 Pfam PF06877 Regulator of ribonuclease activity B 12 113 4.3E-35 T 28-03-2018 IPR009671 Regulator of ribonuclease activity B domain AM348_RS02410 7432b2606ddc4d74c27319cbf25b5796 141 Gene3D G3DSA:3.30.70.970 3 116 6.0E-44 T 28-03-2018 IPR009671 Regulator of ribonuclease activity B domain AM348_RS02410 7432b2606ddc4d74c27319cbf25b5796 141 SUPERFAMILY SSF89946 2 122 1.57E-42 T 28-03-2018 IPR009671 Regulator of ribonuclease activity B domain AM348_RS02410 7432b2606ddc4d74c27319cbf25b5796 141 PIRSF PIRSF018193 1 141 4.7E-67 T 28-03-2018 IPR016716 Regulator of ribonuclease activity B AM348_RS04590 ecd95fc44498c22bf92ad98b448da4dd 336 Gene3D G3DSA:3.90.180.10 2 334 3.4E-59 T 28-03-2018 AM348_RS04590 ecd95fc44498c22bf92ad98b448da4dd 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 134 2.1E-30 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS04590 ecd95fc44498c22bf92ad98b448da4dd 336 SUPERFAMILY SSF51735 140 300 1.35E-26 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04590 ecd95fc44498c22bf92ad98b448da4dd 336 Pfam PF00107 Zinc-binding dehydrogenase 177 295 7.8E-13 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS04590 ecd95fc44498c22bf92ad98b448da4dd 336 SMART SM00829 14 331 0.002 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS04590 ecd95fc44498c22bf92ad98b448da4dd 336 SUPERFAMILY SSF50129 16 175 2.83E-45 T 28-03-2018 IPR011032 GroES-like AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.926 T 28-03-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 SUPERFAMILY SSF53335 6 365 1.26E-53 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 28-03-2018 IPR030390 RNA methyltransferase TrmA, active site AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 366 1.9E-187 T 28-03-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 Gene3D G3DSA:3.40.50.150 154 366 6.0E-35 T 28-03-2018 AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 28-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site AM348_RS04090 7890c01ec8a1529132c40612c15aa147 366 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 366 1.9E-191 T 28-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 Pfam PF04452 RNA methyltransferase 19 236 7.3E-74 T 28-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 Gene3D G3DSA:3.40.1280.10 74 243 7.4E-56 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 4.0E-94 T 28-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 PIRSF PIRSF015601 2 242 5.4E-53 T 28-03-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 SUPERFAMILY SSF75217 75 242 2.2E-51 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 SUPERFAMILY SSF88697 2 70 1.44E-17 T 28-03-2018 IPR015947 PUA-like domain AM348_RS09260 20af42890ecfc0c67045d397fda33755 243 Gene3D G3DSA:2.40.240.20 1 73 2.6E-22 T 28-03-2018 AM348_RS21915 75630e3d9cf7378c3d2fb2b34d380cfb 379 SUPERFAMILY SSF103501 157 370 1.31E-33 T 28-03-2018 IPR023234 NarG-like domain AM348_RS21915 75630e3d9cf7378c3d2fb2b34d380cfb 379 Gene3D G3DSA:3.30.70.20 5 101 4.5E-5 T 28-03-2018 AM348_RS21915 75630e3d9cf7378c3d2fb2b34d380cfb 379 SUPERFAMILY SSF54862 20 102 6.56E-7 T 28-03-2018 AM348_RS21915 75630e3d9cf7378c3d2fb2b34d380cfb 379 Gene3D G3DSA:1.20.950.20 153 363 1.9E-30 T 28-03-2018 AM348_RS21915 75630e3d9cf7378c3d2fb2b34d380cfb 379 TIGRFAM TIGR02484 CitB: CitB domain protein 15 374 1.3E-118 T 28-03-2018 IPR012830 Citrate utilization protein B AM348_RS00665 6aad07be06b39c22ca3a42a9390ee314 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 27.173 T 28-03-2018 IPR009624 Uncharacterised protein family UPF0253 AM348_RS00665 6aad07be06b39c22ca3a42a9390ee314 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 1.6E-35 T 28-03-2018 IPR009624 Uncharacterised protein family UPF0253 AM348_RS00665 6aad07be06b39c22ca3a42a9390ee314 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 3.0E-29 T 28-03-2018 IPR009624 Uncharacterised protein family UPF0253 AM348_RS16830 6a8b30b2e257f2cae485bb1a7bd0955d 63 Pfam PF13617 YnbE-like lipoprotein 7 61 5.6E-29 T 28-03-2018 IPR025985 YnbE-like lipoprotein AM348_RS16830 6a8b30b2e257f2cae485bb1a7bd0955d 63 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 16 63 9.0E-20 T 28-03-2018 AM348_RS07545 0ccb8ff6b294455532398a1512c552d3 184 SUPERFAMILY SSF51161 5 176 2.08E-44 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS07545 0ccb8ff6b294455532398a1512c552d3 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 6.2E-8 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS07545 0ccb8ff6b294455532398a1512c552d3 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 46 0.0022 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS07545 0ccb8ff6b294455532398a1512c552d3 184 Gene3D G3DSA:2.160.10.10 2 184 4.8E-41 T 28-03-2018 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 SUPERFAMILY SSF53850 27 345 2.17E-95 T 28-03-2018 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 Gene3D G3DSA:3.40.190.10 148 287 1.1E-34 T 28-03-2018 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 Pfam PF13416 Bacterial extracellular solute-binding protein 42 313 3.0E-38 T 28-03-2018 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 Gene3D G3DSA:3.40.190.10 24 147 1.8E-16 T 28-03-2018 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 167 186 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 149 163 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 293 319 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 248 267 3.1E-95 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS19435 4110dedde9b0cb1cf3a4dd8aff43353c 348 PIRSF PIRSF019574 1 348 1.9E-133 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS10925 ad45851470805d8c3c57dd5a086499f6 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 83 1.3E-9 T 28-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM348_RS10925 ad45851470805d8c3c57dd5a086499f6 284 SUPERFAMILY SSF53697 107 273 3.84E-28 T 28-03-2018 AM348_RS10925 ad45851470805d8c3c57dd5a086499f6 284 Pfam PF01380 SIS domain 140 266 1.2E-19 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS10925 ad45851470805d8c3c57dd5a086499f6 284 SUPERFAMILY SSF46689 9 85 3.4E-18 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS10925 ad45851470805d8c3c57dd5a086499f6 284 Gene3D G3DSA:1.10.10.10 3 88 3.4E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10925 ad45851470805d8c3c57dd5a086499f6 284 Gene3D G3DSA:3.40.50.10490 89 283 4.5E-27 T 28-03-2018 AM348_RS20800 1852424f5f4ab14e6cf9e665bafb7cbc 473 Pfam PF13520 Amino acid permease 11 447 2.4E-30 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS20800 1852424f5f4ab14e6cf9e665bafb7cbc 473 PIRSF PIRSF006060 1 472 3.9E-52 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS02505 e1a26a369d974e584217ca04f6693c63 712 Pfam PF03477 ATP cone domain 4 89 8.9E-21 T 28-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AM348_RS02505 e1a26a369d974e584217ca04f6693c63 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 4.9E-212 T 28-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 AM348_RS02505 e1a26a369d974e584217ca04f6693c63 712 SUPERFAMILY SSF51998 121 687 1.01E-200 T 28-03-2018 AM348_RS02505 e1a26a369d974e584217ca04f6693c63 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 28-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM348_RS02505 e1a26a369d974e584217ca04f6693c63 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 2.8E-183 T 28-03-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2 AM348_RS02505 e1a26a369d974e584217ca04f6693c63 712 Gene3D G3DSA:3.20.70.20 121 687 8.0E-210 T 28-03-2018 AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 SUPERFAMILY SSF46785 4 108 9.05E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 SUPERFAMILY SSF53850 90 292 7.76E-41 T 28-03-2018 AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 Pfam PF03466 LysR substrate binding domain 90 291 7.2E-41 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 Gene3D G3DSA:3.40.190.10 89 173 2.8E-14 T 28-03-2018 AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 Gene3D G3DSA:3.40.190.10 174 260 9.5E-19 T 28-03-2018 AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.1E-20 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS07750 0eb826e77fdee26c4b524c2b3c542971 309 Gene3D G3DSA:1.10.10.10 3 84 7.2E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 SUPERFAMILY SSF52540 6 243 6.23E-65 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 SMART SM00382 41 222 6.4E-19 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 222 307 1.8E-20 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 Gene3D G3DSA:3.40.50.300 3 309 7.6E-72 T 28-03-2018 AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 Pfam PF00005 ABC transporter 32 173 1.9E-27 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17465 f315d2fc95d2060165a4e936406abeb0 311 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 224 289 3.3E-17 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 Pfam PF03734 L,D-transpeptidase catalytic domain 345 511 5.0E-31 T 28-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 Gene3D G3DSA:2.40.440.10 342 523 9.6E-24 T 28-03-2018 AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 Pfam PF01471 Putative peptidoglycan binding domain 255 316 1.7E-8 T 28-03-2018 IPR002477 Peptidoglycan binding-like AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 SUPERFAMILY SSF141523 343 396 3.53E-20 T 28-03-2018 AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 SUPERFAMILY SSF141523 452 501 3.53E-20 T 28-03-2018 AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 Gene3D G3DSA:1.10.101.10 243 319 1.4E-21 T 28-03-2018 IPR002477 Peptidoglycan binding-like AM348_RS20675 4adc7c3b202cc69149fc0619d1ac373b 583 SUPERFAMILY SSF47090 239 324 1.1E-14 T 28-03-2018 IPR002477 Peptidoglycan binding-like AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 PIRSF PIRSF038971 1 378 1.7E-153 T 28-03-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 SUPERFAMILY SSF51338 1 50 4.55E-10 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 SUPERFAMILY SSF51338 345 377 4.55E-10 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 Pfam PF07969 Amidohydrolase family 222 378 3.9E-11 T 28-03-2018 IPR013108 Amidohydrolase 3 AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 SUPERFAMILY SSF51556 50 345 1.98E-23 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 2 378 2.6E-162 T 28-03-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 Gene3D G3DSA:3.20.20.140 48 360 4.3E-29 T 28-03-2018 AM348_RS03295 3b4589cc7e7b865e58d3c2eb7246e98b 378 Gene3D G3DSA:2.30.40.10 1 47 1.8E-6 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS19450 62c29d02bbd3462c75429ffd946320b8 303 Pfam PF00480 ROK family 2 300 7.3E-68 T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS19450 62c29d02bbd3462c75429ffd946320b8 303 ProSitePatterns PS01125 ROK family signature. 130 157 - T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS19450 62c29d02bbd3462c75429ffd946320b8 303 SUPERFAMILY SSF53067 1 300 3.43E-60 T 28-03-2018 AM348_RS19450 62c29d02bbd3462c75429ffd946320b8 303 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 303 64.734 T 28-03-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 AM348_RS19450 62c29d02bbd3462c75429ffd946320b8 303 Gene3D G3DSA:3.30.420.40 1 112 1.6E-25 T 28-03-2018 AM348_RS19450 62c29d02bbd3462c75429ffd946320b8 303 Gene3D G3DSA:3.30.420.40 113 303 4.6E-49 T 28-03-2018 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 SUPERFAMILY SSF51569 3 276 1.83E-68 T 28-03-2018 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 272 335 1.0E-28 T 28-03-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 Pfam PF00682 HMGL-like 6 262 6.4E-77 T 28-03-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 SUPERFAMILY SSF89000 288 336 1.26E-17 T 28-03-2018 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 Gene3D G3DSA:1.10.8.60 279 337 8.5E-32 T 28-03-2018 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 337 225.41 T 28-03-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 4 336 1.4E-181 T 28-03-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 Pfam PF07836 DmpG-like communication domain 274 334 7.4E-30 T 28-03-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 AM348_RS00015 66aa207a04a0667a4ceb959226397c40 337 Gene3D G3DSA:3.20.20.70 5 278 2.3E-58 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07950 70ec69e57d0f0fc3b5ab1b415524f4ba 191 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 185 27.758 T 28-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AM348_RS07950 70ec69e57d0f0fc3b5ab1b415524f4ba 191 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 9 183 1.2E-54 T 28-03-2018 IPR010664 Lipopolysaccharide assembly, LptC-related AM348_RS07950 70ec69e57d0f0fc3b5ab1b415524f4ba 191 PIRSF PIRSF028513 1 186 3.3E-40 T 28-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AM348_RS07950 70ec69e57d0f0fc3b5ab1b415524f4ba 191 Gene3D G3DSA:2.60.450.10 28 150 6.7E-6 T 28-03-2018 AM348_RS07950 70ec69e57d0f0fc3b5ab1b415524f4ba 191 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 182 5.9E-53 T 28-03-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 AM348_RS07875 e1ae161869bf8796341242fa7df9621d 416 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 11 397 2.0E-68 T 28-03-2018 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 AM348_RS06730 675a10d3858a14993fb79ff544bef67b 222 SUPERFAMILY SSF52540 1 216 3.46E-67 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06730 675a10d3858a14993fb79ff544bef67b 222 SMART SM00382 27 214 1.1E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06730 675a10d3858a14993fb79ff544bef67b 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06730 675a10d3858a14993fb79ff544bef67b 222 Pfam PF00005 ABC transporter 18 165 3.8E-37 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06730 675a10d3858a14993fb79ff544bef67b 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 1.7E-92 T 28-03-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 AM348_RS06730 675a10d3858a14993fb79ff544bef67b 222 Gene3D G3DSA:3.40.50.300 1 219 9.0E-62 T 28-03-2018 AM348_RS18330 66500dad48bf85c0829b47d515b32adf 213 Pfam PF13309 HTH domain 145 205 1.6E-15 T 28-03-2018 AM348_RS18330 66500dad48bf85c0829b47d515b32adf 213 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 9 129 2.0E-55 T 28-03-2018 IPR013559 YheO-like AM348_RS18330 66500dad48bf85c0829b47d515b32adf 213 Pfam PF08348 YheO-like PAS domain 10 120 3.2E-33 T 28-03-2018 IPR013559 YheO-like AM348_RS18330 66500dad48bf85c0829b47d515b32adf 213 Gene3D G3DSA:1.10.10.60 146 212 2.5E-5 T 28-03-2018 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 SUPERFAMILY SSF48179 164 291 5.78E-29 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 SUPERFAMILY SSF51735 1 162 3.79E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 Gene3D G3DSA:1.10.1040.10 163 294 1.7E-24 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 Gene3D G3DSA:3.40.50.720 1 162 1.9E-33 T 28-03-2018 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 PIRSF PIRSF000103 1 294 8.4E-111 T 28-03-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 160 5.4E-46 T 28-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 283 1.9E-22 T 28-03-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 Hamap MF_01913 3-sulfolactaldehyde reductase. 1 292 60.429 T 28-03-2018 IPR030876 3-sulfolactaldehyde reductase GO:0061596|GO:1902777 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|MetaCyc: PWY-7446 AM348_RS04600 588f8320fabf76408e94397b8303ded6 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 28-03-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 Gene3D G3DSA:1.10.10.10 1 57 7.8E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 Pfam PF01037 Lrp/AsnC ligand binding domain 76 143 1.2E-17 T 28-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 SUPERFAMILY SSF54909 68 152 3.22E-19 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 53 4.6E-14 T 28-03-2018 AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 28-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 SMART SM00344 6 113 2.8E-44 T 28-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 Gene3D G3DSA:3.30.70.920 59 150 3.0E-20 T 28-03-2018 AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 SUPERFAMILY SSF46785 4 66 5.86E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 2.4E-14 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 2.4E-14 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS05230 11fb5fb348137ac12f13ebae5d0c9bf9 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 2.4E-14 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 3.0E-18 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 28-03-2018 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 SMART SM00354 6 76 2.1E-32 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 SUPERFAMILY SSF47413 5 64 5.07E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 Gene3D G3DSA:3.40.50.2300 60 180 8.8E-37 T 28-03-2018 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 Gene3D G3DSA:1.10.260.40 7 59 5.4E-20 T 28-03-2018 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 65 338 3.7E-83 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 Gene3D G3DSA:3.40.50.2300 181 329 1.0E-29 T 28-03-2018 AM348_RS18060 e3e7b5b650fcb669c203a4ab37dad9e4 342 SUPERFAMILY SSF53822 63 338 2.36E-53 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS15985 4c37c7b64343dfbba970e4ee9d542088 302 SUPERFAMILY SSF161098 100 283 1.1E-23 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS15985 4c37c7b64343dfbba970e4ee9d542088 302 Gene3D G3DSA:1.10.3720.10 28 291 1.8E-37 T 28-03-2018 AM348_RS15985 4c37c7b64343dfbba970e4ee9d542088 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 70 2.6E-13 T 28-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM348_RS15985 4c37c7b64343dfbba970e4ee9d542088 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 300 8.9E-26 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 Gene3D G3DSA:1.20.1250.20 240 450 8.9E-31 T 28-03-2018 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 Gene3D G3DSA:1.20.1250.20 18 224 5.2E-34 T 28-03-2018 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 Pfam PF07690 Major Facilitator Superfamily 34 400 8.2E-45 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 3.4E-168 T 28-03-2018 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 1.2E-268 T 28-03-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 SUPERFAMILY SSF103473 13 442 8.37E-84 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 28-03-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-70153 AM348_RS12770 f28b8b3d6e7b53f02356c9f53687763d 452 PIRSF PIRSF002808 5 452 2.1E-176 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 Pfam PF00990 Diguanylate cyclase, GGDEF domain 346 493 1.2E-35 T 28-03-2018 IPR000160 GGDEF domain AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 Gene3D G3DSA:3.30.70.270 337 496 2.7E-33 T 28-03-2018 AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 SUPERFAMILY SSF55073 349 493 5.41E-32 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 SMART SM00267 333 493 3.2E-39 T 28-03-2018 IPR000160 GGDEF domain AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 343 494 1.3E-35 T 28-03-2018 IPR000160 GGDEF domain AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 Gene3D G3DSA:3.30.450.20 30 227 1.8E-6 T 28-03-2018 AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 Gene3D G3DSA:3.30.450.20 228 312 0.0019 T 28-03-2018 AM348_RS19210 29a45609d3950342c6937fd3fa146ded 496 Pfam PF17155 Gammaproteobacterial periplasmic sensor domain 31 304 1.7E-131 T 28-03-2018 IPR033420 Gammaproteobacterial periplasmic sensor domain GAPES1 AM348_RS01220 62303167a0054f9133316044a8f09663 438 Pfam PF08245 Mur ligase middle domain 110 280 1.4E-27 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01220 62303167a0054f9133316044a8f09663 438 Gene3D G3DSA:3.40.1190.10 95 299 9.2E-60 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01220 62303167a0054f9133316044a8f09663 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 372 6.6E-9 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01220 62303167a0054f9133316044a8f09663 438 SUPERFAMILY SSF53623 95 297 5.1E-57 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS01220 62303167a0054f9133316044a8f09663 438 SUPERFAMILY SSF51984 3 94 7.85E-25 T 28-03-2018 AM348_RS01220 62303167a0054f9133316044a8f09663 438 Gene3D G3DSA:3.90.190.20 300 434 1.4E-34 T 28-03-2018 AM348_RS01220 62303167a0054f9133316044a8f09663 438 SUPERFAMILY SSF53244 299 437 1.14E-52 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS01220 62303167a0054f9133316044a8f09663 438 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 8.6E-128 T 28-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS01220 62303167a0054f9133316044a8f09663 438 Gene3D G3DSA:3.40.50.720 1 94 8.0E-15 T 28-03-2018 AM348_RS01220 62303167a0054f9133316044a8f09663 438 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.894 T 28-03-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 Pfam PF02311 AraC-like ligand binding domain 24 151 9.4E-23 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 SMART SM00342 186 268 1.1E-22 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 Gene3D G3DSA:1.10.10.60 228 274 1.5E-10 T 28-03-2018 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 Gene3D G3DSA:2.60.120.280 10 185 2.0E-13 T 28-03-2018 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 SUPERFAMILY SSF46689 222 271 3.66E-9 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 SUPERFAMILY SSF46689 170 219 1.34E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 Gene3D G3DSA:1.10.10.60 186 227 3.6E-10 T 28-03-2018 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 Pfam PF12833 Helix-turn-helix domain 192 269 4.2E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS02710 94a058890c9fbb4358e03091b70672d0 274 SUPERFAMILY SSF51215 32 141 4.71E-17 T 28-03-2018 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 SMART SM00278 73 92 1.3 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 SMART SM00278 108 127 0.05 T 28-03-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Gene3D G3DSA:2.40.50.140 2 56 6.4E-23 T 28-03-2018 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 2.3E-73 T 28-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Gene3D G3DSA:1.10.150.280 57 80 0.029 T 28-03-2018 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 SUPERFAMILY SSF50249 2 63 3.08E-18 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Pfam PF01330 RuvA N terminal domain 2 62 1.9E-19 T 28-03-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 203 32.654 T 28-03-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.1E-15 T 28-03-2018 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Gene3D G3DSA:1.10.150.20 81 142 2.8E-14 T 28-03-2018 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Pfam PF07499 RuvA, C-terminal domain 159 201 2.7E-15 T 28-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 Gene3D G3DSA:1.10.8.10 157 202 1.7E-15 T 28-03-2018 AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 SUPERFAMILY SSF47781 66 137 1.25E-21 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS15135 6f735ca865e4fe5e99dc87a7d2d87b26 203 SUPERFAMILY SSF46929 157 201 7.59E-11 T 28-03-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 AM348_RS14380 71e1575773963a30ecc740192d185647 261 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 15 254 1.7E-79 T 28-03-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 AM348_RS14380 71e1575773963a30ecc740192d185647 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 7.8E-34 T 28-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM348_RS14380 71e1575773963a30ecc740192d185647 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 7.8E-34 T 28-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM348_RS14380 71e1575773963a30ecc740192d185647 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 7.8E-34 T 28-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM348_RS14380 71e1575773963a30ecc740192d185647 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 7.8E-34 T 28-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM348_RS14380 71e1575773963a30ecc740192d185647 261 Pfam PF01311 Bacterial export proteins, family 1 15 246 2.7E-67 T 28-03-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 AM348_RS19715 2594b0c7f818d7aefb15920dfcef72a2 170 SUPERFAMILY SSF55729 1 154 8.89E-25 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS19715 2594b0c7f818d7aefb15920dfcef72a2 170 Gene3D G3DSA:3.40.630.30 1 163 1.7E-26 T 28-03-2018 AM348_RS19715 2594b0c7f818d7aefb15920dfcef72a2 170 Pfam PF00583 Acetyltransferase (GNAT) family 41 146 5.9E-13 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 Gene3D G3DSA:3.40.50.720 209 373 1.7E-44 T 28-03-2018 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 3.9E-86 T 28-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 SUPERFAMILY SSF51735 202 446 1.14E-75 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 4.9E-49 T 28-03-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 SUPERFAMILY SSF53223 7 196 1.38E-73 T 28-03-2018 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 Gene3D G3DSA:3.40.50.10860 62 190 7.6E-54 T 28-03-2018 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 SMART SM00839 204 445 6.2E-92 T 28-03-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 8.3E-33 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 8.3E-33 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 8.3E-33 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 8.3E-33 T 28-03-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 PIRSF PIRSF000185 22 447 4.1E-113 T 28-03-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 Gene3D G3DSA:1.10.285.10 6 61 2.4E-8 T 28-03-2018 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 Gene3D G3DSA:1.10.285.10 374 447 4.3E-25 T 28-03-2018 AM348_RS19095 ab1e0a598f4771b1c18b67e8e6dcd5a3 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 28-03-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 AM348_RS01115 0e141a8f3626667db25c17b499a51179 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 5.8E-160 T 28-03-2018 IPR031347 Protein AmpE AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 SMART SM00387 371 482 2.8E-38 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 SMART SM00304 207 260 1.1E-7 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 480 2.8E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 Pfam PF00672 HAMP domain 212 256 1.8E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 SUPERFAMILY SSF158472 211 258 7.45E-5 T 28-03-2018 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 9 479 1.0E-159 T 28-03-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 SUPERFAMILY SSF55874 316 480 1.02E-40 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 326 8.2E-11 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 Gene3D G3DSA:3.30.565.10 331 483 1.4E-40 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 461 7.8E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 479 7.8E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 436 7.8E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 7.8E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 SMART SM00388 261 327 1.3E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 SUPERFAMILY SSF47384 244 328 3.92E-16 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS22615 73852daa90f16aeb316c2da0329ffdf8 483 Gene3D G3DSA:1.10.287.130 251 323 1.9E-11 T 28-03-2018 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 PRINTS PR00123 ATP synthase A subunit signature 104 120 2.3E-15 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 PRINTS PR00123 ATP synthase A subunit signature 203 225 2.3E-15 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 PRINTS PR00123 ATP synthase A subunit signature 251 266 2.3E-15 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 ProSitePatterns PS00449 ATP synthase a subunit signature. 206 215 - T 28-03-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 Pfam PF00119 ATP synthase A chain 47 265 2.0E-55 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 38 266 1.7E-43 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 SUPERFAMILY SSF81336 95 265 2.22E-49 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 Hamap MF_01393 ATP synthase subunit a [atpB]. 12 271 16.095 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05255 dae23f834583a9ec4c9284f48d727025 271 Gene3D G3DSA:1.20.120.220 95 271 6.4E-54 T 28-03-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS21560 aa4401714d16e2c3a1fb70f74985813c 230 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 1.5E-93 T 28-03-2018 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 AM348_RS21560 aa4401714d16e2c3a1fb70f74985813c 230 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 207 5.7E-42 T 28-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM348_RS00925 c160ed358426e8818d4476dbd7a0711a 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 8 138 3.3E-47 T 28-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM348_RS00925 c160ed358426e8818d4476dbd7a0711a 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 9 138 1.2E-36 T 28-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM348_RS00925 c160ed358426e8818d4476dbd7a0711a 163 SUPERFAMILY SSF55083 7 157 5.49E-55 T 28-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM348_RS00925 c160ed358426e8818d4476dbd7a0711a 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 93 104 - T 28-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM348_RS00925 c160ed358426e8818d4476dbd7a0711a 163 Gene3D G3DSA:3.30.70.560 4 162 2.6E-57 T 28-03-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 332 348 4.1E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 317 332 4.1E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 SUPERFAMILY SSF52317 36 226 1.68E-32 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 Gene3D G3DSA:1.10.10.60 244 304 1.2E-12 T 28-03-2018 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 302 344 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 SUPERFAMILY SSF46689 302 350 5.82E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 Gene3D G3DSA:3.40.50.880 25 240 5.1E-32 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 Gene3D G3DSA:1.10.10.60 305 355 1.8E-13 T 28-03-2018 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 SMART SM00342 265 348 4.8E-29 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 Pfam PF12833 Helix-turn-helix domain 271 348 4.0E-26 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 Pfam PF01965 DJ-1/PfpI family 76 208 2.3E-11 T 28-03-2018 IPR002818 DJ-1/PfpI AM348_RS19130 7354c47c4e5f5155cf7db212c2ebfd63 355 SUPERFAMILY SSF46689 248 299 7.35E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 Gene3D G3DSA:3.30.70.20 120 158 4.9E-20 T 28-03-2018 AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 SUPERFAMILY SSF54862 47 228 3.24E-68 T 28-03-2018 AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 138 149 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 Gene3D G3DSA:3.30.70.20 32 61 0.0063 T 28-03-2018 AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 Pfam PF13247 4Fe-4S dicluster domain 100 193 1.5E-29 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 Gene3D G3DSA:3.30.70.20 159 237 1.5E-24 T 28-03-2018 AM348_RS18595 a2b314b67db2246403d6127cfeec50e7 250 Gene3D G3DSA:3.30.70.20 62 119 3.1E-17 T 28-03-2018 AM348_RS22370 b224e2ab863094db0b6ed1419fb5c6d9 329 SUPERFAMILY SSF81345 3 324 2.62E-72 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS22370 b224e2ab863094db0b6ed1419fb5c6d9 329 Pfam PF01032 FecCD transport family 19 323 5.9E-85 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS22370 b224e2ab863094db0b6ed1419fb5c6d9 329 Gene3D G3DSA:1.10.3470.10 2 329 1.5E-63 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 Pfam PF03466 LysR substrate binding domain 90 296 2.2E-46 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 SUPERFAMILY SSF46785 4 86 7.03E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 Gene3D G3DSA:3.40.190.10 90 178 2.8E-20 T 28-03-2018 AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.7E-21 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 SUPERFAMILY SSF53850 91 297 1.86E-42 T 28-03-2018 AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 Gene3D G3DSA:1.10.10.10 1 85 7.8E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 Gene3D G3DSA:3.40.190.10 179 270 6.6E-25 T 28-03-2018 AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 7.8E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 7.8E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17890 dfb983c040f7a956809402a6aea40fe8 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 7.8E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1046 0.0 T 28-03-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82866 294 505 4.19E-41 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82866 807 1039 2.35E-43 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Gene3D G3DSA:3.30.2090.10 723 809 7.8E-19 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82693 46 126 1.46E-20 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Gene3D G3DSA:3.30.2090.10 183 271 4.8E-19 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Gene3D G3DSA:3.30.70.1430 45 139 1.9E-21 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82714 723 806 3.79E-16 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.1E-22 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.1E-22 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.1E-22 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.1E-22 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 1.1E-22 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 1.1E-22 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82693 138 184 1.15E-21 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82693 271 328 1.15E-21 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Gene3D G3DSA:1.20.1640.10 287 517 2.1E-44 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Gene3D G3DSA:1.20.1640.10 824 1047 2.4E-31 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Gene3D G3DSA:3.30.70.1430 567 665 1.8E-8 T 28-03-2018 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 Pfam PF00873 AcrB/AcrD/AcrF family 6 1037 2.4E-236 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS22590 70d48059dda304fdc1b7776395d814af 1047 SUPERFAMILY SSF82714 185 269 1.44E-21 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS23315 4f96d4c79cee3effc0301d3f84923ab7 139 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 4 135 23.431 T 28-03-2018 IPR011605 NusB antitermination factor GO:0006353 AM348_RS23315 4f96d4c79cee3effc0301d3f84923ab7 139 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 131 4.0E-45 T 28-03-2018 IPR011605 NusB antitermination factor GO:0006353 AM348_RS23315 4f96d4c79cee3effc0301d3f84923ab7 139 SUPERFAMILY SSF48013 3 134 9.03E-42 T 28-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM348_RS23315 4f96d4c79cee3effc0301d3f84923ab7 139 Gene3D G3DSA:1.10.940.10 1 138 3.6E-42 T 28-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM348_RS23315 4f96d4c79cee3effc0301d3f84923ab7 139 Pfam PF01029 NusB family 7 131 1.2E-34 T 28-03-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 AM348_RS09900 30ada522c6a14714ea0da732b3cbfd8a 215 Gene3D G3DSA:3.40.225.10 1 213 1.3E-60 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS09900 30ada522c6a14714ea0da732b3cbfd8a 215 SMART SM01007 8 182 2.7E-69 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS09900 30ada522c6a14714ea0da732b3cbfd8a 215 Hamap MF_00987 L-fuculose phosphate aldolase [fucA]. 1 215 60.087 T 28-03-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 AM348_RS09900 30ada522c6a14714ea0da732b3cbfd8a 215 TIGRFAM TIGR01086 fucA: L-fuculose phosphate aldolase 2 215 2.0E-129 T 28-03-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 AM348_RS09900 30ada522c6a14714ea0da732b3cbfd8a 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 182 1.9E-49 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS09900 30ada522c6a14714ea0da732b3cbfd8a 215 SUPERFAMILY SSF53639 1 212 1.61E-69 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 Pfam PF04055 Radical SAM superfamily 19 229 4.9E-31 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 2 288 3.7E-107 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 PIRSF PIRSF000371 1 299 2.5E-91 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 Gene3D G3DSA:3.80.30.10 121 299 1.3E-28 T 28-03-2018 AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 SUPERFAMILY SSF102114 125 265 7.85E-14 T 28-03-2018 AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 Pfam PF13353 4Fe-4S single cluster domain 12 154 2.0E-9 T 28-03-2018 AM348_RS21105 dd8afff4dfa9d4239ed1524e6a93e9a2 299 ProSitePatterns PS01087 Radical activating enzymes signature. 13 34 - T 28-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 Gene3D G3DSA:1.10.275.10 4 105 1.9E-19 T 28-03-2018 IPR024083 Fumarase/histidase, N-terminal AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 SUPERFAMILY SSF48557 10 446 2.83E-120 T 28-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 SMART SM00998 364 443 4.1E-28 T 28-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 Gene3D G3DSA:1.20.200.10 106 375 1.2E-81 T 28-03-2018 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 Gene3D G3DSA:1.10.40.30 376 443 9.2E-23 T 28-03-2018 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 1.6E-25 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00149 Fumarate lyase superfamily signature 231 258 1.6E-25 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00149 Fumarate lyase superfamily signature 101 119 1.6E-25 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00149 Fumarate lyase superfamily signature 146 164 1.6E-25 T 28-03-2018 IPR000362 Fumarate lyase family AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 Pfam PF10397 Adenylosuccinate lyase C-terminus 365 442 8.0E-20 T 28-03-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 Pfam PF00206 Lyase 17 297 2.0E-50 T 28-03-2018 IPR022761 Fumarate lyase, N-terminal AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00145 Argininosuccinate lyase family signature 231 255 2.2E-11 T 28-03-2018 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00145 Argininosuccinate lyase family signature 100 122 2.2E-11 T 28-03-2018 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00145 Argininosuccinate lyase family signature 141 161 2.2E-11 T 28-03-2018 AM348_RS21240 42f759077584d1f047fa8de9d61cb639 450 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 2.2E-11 T 28-03-2018 AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 2.2E-163 T 28-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 SUPERFAMILY SSF53271 252 485 2.49E-72 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 PIRSF PIRSF000485 1 483 1.2E-173 T 28-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 SUPERFAMILY SSF56235 2 259 3.6E-75 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 Gene3D G3DSA:3.40.50.2020 279 446 5.7E-38 T 28-03-2018 AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 Pfam PF13522 Glutamine amidotransferase domain 64 209 4.9E-16 T 28-03-2018 AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 45.071 T 28-03-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 Gene3D G3DSA:3.60.20.10 45 278 7.9E-55 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS12460 c4c80602817a830e7a91a8c58c6bf1f2 505 Pfam PF00156 Phosphoribosyl transferase domain 286 394 1.2E-7 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS10920 bd156e55ca03819856acd3b54e9be348 188 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 3 183 6.2E-80 T 28-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM348_RS10920 bd156e55ca03819856acd3b54e9be348 188 PIRSF PIRSF004982 1 184 1.8E-52 T 28-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM348_RS10920 bd156e55ca03819856acd3b54e9be348 188 Pfam PF03843 Outer membrane lipoprotein Slp family 16 168 1.8E-44 T 28-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM348_RS14810 48450c54c7c7a273f4bcb719f27b174b 1094 Pfam PF06120 Tail length tape measure protein 427 578 3.1E-29 T 28-03-2018 IPR009302 Tail length tape measure AM348_RS14810 48450c54c7c7a273f4bcb719f27b174b 1094 Pfam PF06120 Tail length tape measure protein 556 676 2.4E-9 T 28-03-2018 IPR009302 Tail length tape measure AM348_RS14810 48450c54c7c7a273f4bcb719f27b174b 1094 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 854 925 5.1E-17 T 28-03-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal AM348_RS14810 48450c54c7c7a273f4bcb719f27b174b 1094 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 158 231 8.3E-23 T 28-03-2018 IPR013491 Caudovirus, tape measure, N-terminal AM348_RS14810 48450c54c7c7a273f4bcb719f27b174b 1094 TIGRFAM TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family 717 1036 2.7E-77 T 28-03-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 29 114 9.1E-13 T 28-03-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00156 Type I copper blue protein family signature 46 59 8.5E-9 T 28-03-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00156 Type I copper blue protein family signature 60 75 8.5E-9 T 28-03-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00156 Type I copper blue protein family signature 92 106 8.5E-9 T 28-03-2018 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 29 143 1.3E-32 T 28-03-2018 IPR012745 Pseudoazurin GO:0005507 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 Gene3D G3DSA:2.60.40.420 23 145 2.4E-16 T 28-03-2018 IPR008972 Cupredoxin AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00155 Amicyanin family signature 40 59 5.9E-24 T 28-03-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00155 Amicyanin family signature 60 75 5.9E-24 T 28-03-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00155 Amicyanin family signature 97 112 5.9E-24 T 28-03-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00155 Amicyanin family signature 81 96 5.9E-24 T 28-03-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 PRINTS PR00155 Amicyanin family signature 24 39 5.9E-24 T 28-03-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 AM348_RS20300 267d61a13727673fa488bcb0701828a2 146 SUPERFAMILY SSF49503 24 138 1.72E-25 T 28-03-2018 IPR008972 Cupredoxin AM348_RS08380 65dddca75c8a65fdfa61dfda4350d322 161 Pfam PF07681 DoxX 40 118 1.3E-17 T 28-03-2018 IPR032808 DoxX family AM348_RS19530 7ed5e94dea37ad4c07220202d3ef1159 213 Pfam PF13036 Peptidoglycan-synthase activator LpoB 75 209 1.7E-36 T 28-03-2018 IPR014094 Penicillin-binding protein activator LpoB AM348_RS19530 7ed5e94dea37ad4c07220202d3ef1159 213 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 4 211 34.259 T 28-03-2018 IPR014094 Penicillin-binding protein activator LpoB AM348_RS19530 7ed5e94dea37ad4c07220202d3ef1159 213 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 6 212 4.8E-61 T 28-03-2018 IPR014094 Penicillin-binding protein activator LpoB AM348_RS19530 7ed5e94dea37ad4c07220202d3ef1159 213 Gene3D G3DSA:3.40.50.10070 95 213 9.7E-13 T 28-03-2018 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 Pfam PF00085 Thioredoxin 37 137 6.8E-28 T 28-03-2018 IPR013766 Thioredoxin domain GO:0045454 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 PIRSF PIRSF000077 36 139 3.7E-32 T 28-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 TIGRFAM TIGR01068 thioredoxin: thioredoxin 45 138 2.8E-36 T 28-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 PRINTS PR00421 Thioredoxin family signature 103 114 1.4E-9 T 28-03-2018 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 PRINTS PR00421 Thioredoxin family signature 63 72 1.4E-9 T 28-03-2018 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 PRINTS PR00421 Thioredoxin family signature 55 63 1.4E-9 T 28-03-2018 AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 SUPERFAMILY SSF52833 24 138 3.79E-38 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS11200 3eb229cb68b287a04180e4ab03b66c3e 139 Gene3D G3DSA:3.40.30.10 33 139 2.3E-35 T 28-03-2018 AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 1.1E-18 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 Pfam PF00005 ABC transporter 24 181 4.8E-27 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 SMART SM00382 32 231 2.0E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 317 8.4E-27 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 SUPERFAMILY SSF52540 31 307 5.21E-64 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06310 3856c00edbaee0f155360f42479820fc 327 Gene3D G3DSA:3.40.50.300 1 324 9.1E-76 T 28-03-2018 AM348_RS15730 23c174962bc428a0d3de8200b7e53dc3 560 Pfam PF00916 Sulfate permease family 29 411 1.7E-76 T 28-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM348_RS15730 23c174962bc428a0d3de8200b7e53dc3 560 SUPERFAMILY SSF52091 451 558 1.88E-15 T 28-03-2018 IPR002645 STAS domain AM348_RS15730 23c174962bc428a0d3de8200b7e53dc3 560 Pfam PF01740 STAS domain 452 554 7.1E-13 T 28-03-2018 IPR002645 STAS domain AM348_RS15730 23c174962bc428a0d3de8200b7e53dc3 560 Gene3D G3DSA:3.30.750.24 442 559 6.1E-16 T 28-03-2018 IPR002645 STAS domain AM348_RS15730 23c174962bc428a0d3de8200b7e53dc3 560 TIGRFAM TIGR00815 sulP: sulfate permease 18 554 6.4E-149 T 28-03-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 AM348_RS15730 23c174962bc428a0d3de8200b7e53dc3 560 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 28-03-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Gene3D G3DSA:3.40.50.170 1 201 1.8E-48 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Gene3D G3DSA:3.10.25.10 203 305 5.4E-24 T 28-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 SUPERFAMILY SSF53328 1 202 6.93E-55 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 SUPERFAMILY SSF50486 204 304 2.04E-24 T 28-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 1.2E-45 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 PIRSF PIRSF036506 1 660 0.0 T 28-03-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Gene3D G3DSA:3.40.50.720 314 659 4.0E-48 T 28-03-2018 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 SUPERFAMILY SSF51735 317 651 5.37E-75 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 65.277 T 28-03-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Pfam PF02911 Formyl transferase, C-terminal domain 202 294 1.6E-20 T 28-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS12720 ca4a39cd80b4b71011af128f2eb4a658 660 Pfam PF00551 Formyl transferase 42 176 5.0E-25 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 Gene3D G3DSA:1.10.275.10 2 197 1.7E-72 T 28-03-2018 IPR024083 Fumarase/histidase, N-terminal AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 28-03-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 Pfam PF00221 Aromatic amino acid lyase 11 471 1.9E-186 T 28-03-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 44.715 T 28-03-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 SUPERFAMILY SSF48557 3 504 7.85E-192 T 28-03-2018 IPR008948 L-Aspartase-like GO:0003824 AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 Gene3D G3DSA:1.20.200.10 199 504 3.8E-119 T 28-03-2018 AM348_RS21385 062ca480ccc25446987ccd6df5d19b24 506 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 502 8.7E-222 T 28-03-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 SUPERFAMILY SSF52172 3 107 2.78E-10 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 SUPERFAMILY SSF52738 159 345 6.93E-57 T 28-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 Pfam PF01339 CheB methylesterase 166 340 5.1E-52 T 28-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 Gene3D G3DSA:3.40.50.180 154 351 2.8E-61 T 28-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 Pfam PF00072 Response regulator receiver domain 8 84 8.2E-5 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 Gene3D G3DSA:3.40.50.2300 5 145 2.1E-11 T 28-03-2018 AM348_RS10250 6d4c86f3a36d8932c7feeff3ad28cb65 355 PIRSF PIRSF000876 3 349 1.9E-78 T 28-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 ProSitePatterns PS00211 ABC transporters family signature. 410 424 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 SMART SM00382 291 497 1.6E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 SMART SM00382 30 222 1.3E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 Pfam PF00005 ABC transporter 282 437 3.0E-19 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 Pfam PF00005 ABC transporter 22 172 1.0E-29 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 Gene3D G3DSA:3.40.50.300 2 263 1.1E-50 T 28-03-2018 AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 SUPERFAMILY SSF52540 4 229 8.56E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 SUPERFAMILY SSF52540 278 493 1.45E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10955 7f3d2e6176f59027c3f87eb67816824e 515 Gene3D G3DSA:3.40.50.300 264 501 2.5E-37 T 28-03-2018 AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 Pfam PF01575 MaoC like domain 536 649 9.4E-32 T 28-03-2018 IPR002539 MaoC-like domain AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 SUPERFAMILY SSF54637 525 676 9.96E-37 T 28-03-2018 IPR029069 HotDog domain AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 Gene3D G3DSA:3.40.309.10 267 484 9.7E-39 T 28-03-2018 AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 Pfam PF00171 Aldehyde dehydrogenase family 19 496 5.9E-57 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 SUPERFAMILY SSF53720 5 500 7.59E-79 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 4 674 0.0 T 28-03-2018 IPR011966 Phenylacetic acid degradation protein PaaN KEGG: 00360+3.3.2.12+1.2.1.91 AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 Gene3D G3DSA:3.40.605.10 1 266 1.1E-35 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS19615 5c2677064d9672fb73929ce54ba584ac 681 Gene3D G3DSA:3.10.129.10 499 673 6.2E-40 T 28-03-2018 AM348_RS06675 4473fbca45eb14b33232e6b560bf1041 348 Pfam PF01594 AI-2E family transporter 14 328 5.2E-79 T 28-03-2018 IPR002549 Transmembrane protein TqsA-like AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.7E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.7E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.7E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 Gene3D G3DSA:1.10.10.10 1 87 2.8E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.1E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 Gene3D G3DSA:3.40.190.10 88 173 2.8E-20 T 28-03-2018 AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 SUPERFAMILY SSF46785 2 109 1.52E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 Pfam PF03466 LysR substrate binding domain 86 288 8.0E-43 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 Gene3D G3DSA:3.40.190.10 174 262 2.1E-18 T 28-03-2018 AM348_RS04835 c3f9e412b8284668c3f7db07bf4e47a7 317 SUPERFAMILY SSF53850 87 291 1.3E-40 T 28-03-2018 AM348_RS02810 b4033f7264248b2496e5e8724555e549 354 SUPERFAMILY SSF56281 36 302 2.94E-27 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS02810 b4033f7264248b2496e5e8724555e549 354 Hamap MF_01266 Probable L-ascorbate-6-phosphate lactonase UlaG [ulaG]. 1 354 98.254 T 28-03-2018 IPR023951 L-ascorbate-6-phosphate lactonase UlaG GO:0019854|GO:0030145|GO:0035460 AM348_RS02810 b4033f7264248b2496e5e8724555e549 354 Pfam PF13483 Beta-lactamase superfamily domain 42 281 8.0E-16 T 28-03-2018 AM348_RS02810 b4033f7264248b2496e5e8724555e549 354 Gene3D G3DSA:3.60.15.10 1 337 2.7E-49 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 1.9E-164 T 28-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 28-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 Gene3D G3DSA:3.20.20.70 1 336 9.9E-77 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 SUPERFAMILY SSF51395 1 335 2.73E-104 T 28-03-2018 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.037 T 28-03-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 28-03-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 PIRSF PIRSF000164 11 336 4.1E-98 T 28-03-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 AM348_RS20600 46d9ea5270cd9679fe9f08673ddec4c0 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 4.2E-92 T 28-03-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 AM348_RS05265 0a6f5dacd0b1bf845d60f5b9e16da4dd 156 Gene3D G3DSA:1.20.5.620 62 122 5.5E-16 T 28-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain AM348_RS05265 0a6f5dacd0b1bf845d60f5b9e16da4dd 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 3.8E-61 T 28-03-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 AM348_RS05265 0a6f5dacd0b1bf845d60f5b9e16da4dd 156 SUPERFAMILY SSF81573 63 121 2.22E-15 T 28-03-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain AM348_RS05265 0a6f5dacd0b1bf845d60f5b9e16da4dd 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.07 T 28-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AM348_RS05265 0a6f5dacd0b1bf845d60f5b9e16da4dd 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 5.7E-40 T 28-03-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 AM348_RS18125 378265801f0d775a6dc6b78f04b993ed 350 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 3 350 29.019 T 28-03-2018 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 AM348_RS18125 378265801f0d775a6dc6b78f04b993ed 350 Pfam PF03116 NQR2, RnfD, RnfE family 6 348 1.3E-107 T 28-03-2018 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 AM348_RS18125 378265801f0d775a6dc6b78f04b993ed 350 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 349 6.2E-148 T 28-03-2018 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Gene3D G3DSA:2.60.40.1180 623 726 3.8E-34 T 28-03-2018 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 725 9.8E-24 T 28-03-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 PIRSF PIRSF000463 6 727 2.7E-285 T 28-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Gene3D G3DSA:2.60.40.10 112 223 1.2E-34 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 SUPERFAMILY SSF51011 625 726 7.2E-35 T 28-03-2018 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 SUPERFAMILY SSF81296 117 223 6.12E-36 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.784 T 28-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 7.6E-27 T 28-03-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Gene3D G3DSA:2.60.40.10 1 104 7.2E-10 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 SUPERFAMILY SSF81296 16 115 2.97E-18 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 SMART SM00642 247 596 3.7E-6 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 SUPERFAMILY SSF51445 228 621 3.77E-112 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Gene3D G3DSA:3.20.20.80 230 612 2.4E-71 T 28-03-2018 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 0.0 T 28-03-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077 AM348_RS06895 fd65bca8380de53c6372ae183840710f 727 Pfam PF00128 Alpha amylase, catalytic domain 273 343 8.4E-8 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS13280 6a8a1061e9be94db3ed82d8186d4a9b9 319 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 52.439 T 28-03-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 AM348_RS13280 6a8a1061e9be94db3ed82d8186d4a9b9 319 PIRSF PIRSF006621 1 317 6.8E-84 T 28-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS13280 6a8a1061e9be94db3ed82d8186d4a9b9 319 Gene3D G3DSA:3.20.20.70 1 242 1.6E-47 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS13280 6a8a1061e9be94db3ed82d8186d4a9b9 319 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 28-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS13280 6a8a1061e9be94db3ed82d8186d4a9b9 319 SUPERFAMILY SSF51395 1 307 4.58E-72 T 28-03-2018 AM348_RS13280 6a8a1061e9be94db3ed82d8186d4a9b9 319 Pfam PF01207 Dihydrouridine synthase (Dus) 5 301 6.0E-93 T 28-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 3.9E-15 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 428 440 3.9E-15 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 404 421 3.9E-15 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 3.9E-15 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 383 394 3.9E-15 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 Pfam PF00232 Glycosyl hydrolase family 1 3 459 1.1E-134 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 Gene3D G3DSA:3.20.20.80 3 459 1.5E-148 T 28-03-2018 AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 28-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM348_RS05595 504b23cfd7520661d0800fba7716a473 460 SUPERFAMILY SSF51445 1 460 1.26E-161 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 SUPERFAMILY SSF53756 8 813 0.0 T 28-03-2018 AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 PIRSF PIRSF000460 1 815 6.5E-236 T 28-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 28-03-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 Pfam PF00343 Carbohydrate phosphorylase 103 810 0.0 T 28-03-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 28-03-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 Gene3D G3DSA:3.40.50.2000 6 479 1.9E-198 T 28-03-2018 AM348_RS06915 5cf140589fa5349bc9d0e4a77ce467fb 815 Gene3D G3DSA:3.40.50.2000 480 795 1.0E-144 T 28-03-2018 AM348_RS07235 5107c99e448d741c95247f43653bb378 633 Pfam PF12848 ABC transporter 217 297 1.4E-28 T 28-03-2018 IPR032781 ABC-transporter extension domain AM348_RS07235 5107c99e448d741c95247f43653bb378 633 SMART SM00382 337 506 4.8E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS07235 5107c99e448d741c95247f43653bb378 633 SMART SM00382 26 223 7.8E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS07235 5107c99e448d741c95247f43653bb378 633 SUPERFAMILY SSF52540 119 253 1.57E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07235 5107c99e448d741c95247f43653bb378 633 SUPERFAMILY SSF52540 2 92 1.57E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07235 5107c99e448d741c95247f43653bb378 633 Gene3D G3DSA:3.40.50.300 309 610 3.0E-50 T 28-03-2018 AM348_RS07235 5107c99e448d741c95247f43653bb378 633 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS07235 5107c99e448d741c95247f43653bb378 633 SUPERFAMILY SSF52540 294 516 1.71E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07235 5107c99e448d741c95247f43653bb378 633 Gene3D G3DSA:3.40.50.300 2 279 4.1E-53 T 28-03-2018 AM348_RS07235 5107c99e448d741c95247f43653bb378 633 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS07235 5107c99e448d741c95247f43653bb378 633 Pfam PF00005 ABC transporter 17 178 1.6E-22 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS07235 5107c99e448d741c95247f43653bb378 633 Pfam PF00005 ABC transporter 328 459 3.0E-25 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 SUPERFAMILY SSF53807 34 292 1.77E-58 T 28-03-2018 AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 Gene3D G3DSA:3.40.50.1980 138 296 2.9E-28 T 28-03-2018 AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 Gene3D G3DSA:3.40.50.1980 24 137 3.3E-14 T 28-03-2018 AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 Pfam PF01497 Periplasmic binding protein 38 269 4.3E-30 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 273 286 2.5E-54 T 28-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 208 226 2.5E-54 T 28-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 184 199 2.5E-54 T 28-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 236 253 2.5E-54 T 28-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 55 73 2.5E-54 T 28-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM348_RS00855 878e07215263cb8f8a49792e5bb812f3 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 86 101 2.5E-54 T 28-03-2018 IPR008091 Ferrichrome-binding periplasmic protein AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 SUPERFAMILY SSF53613 12 309 7.48E-60 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 473 1.1E-64 T 28-03-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 Gene3D G3DSA:3.40.1190.20 2 310 6.8E-59 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 SUPERFAMILY SSF52374 340 471 8.16E-22 T 28-03-2018 AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 Gene3D G3DSA:3.40.50.620 320 477 1.6E-26 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 1.1E-17 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 Pfam PF00294 pfkB family carbohydrate kinase 12 305 7.6E-57 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 Pfam PF01467 Cytidylyltransferase-like 345 435 8.2E-15 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 312 6.0E-128 T 28-03-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 AM348_RS08735 892b82f04b693f9c8c81014912d7e104 477 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.576 T 28-03-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 AM348_RS12585 32fc110dabd3e7320077fce0508410c4 220 SUPERFAMILY SSF56770 35 185 3.4E-65 T 28-03-2018 AM348_RS12585 32fc110dabd3e7320077fce0508410c4 220 Gene3D G3DSA:3.40.50.700 36 205 2.3E-38 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12585 32fc110dabd3e7320077fce0508410c4 220 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 37 178 1.8E-70 T 28-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12585 32fc110dabd3e7320077fce0508410c4 220 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 177 42.502 T 28-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12585 32fc110dabd3e7320077fce0508410c4 220 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 64 170 3.5E-22 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12585 32fc110dabd3e7320077fce0508410c4 220 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 144 160 - T 28-03-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS15635 e23a0bb8fb9866acb6175a3bd40fe2a2 761 Pfam PF13953 PapC C-terminal domain 685 745 1.9E-10 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS15635 e23a0bb8fb9866acb6175a3bd40fe2a2 761 Pfam PF00577 Outer membrane usher protein 160 664 2.5E-33 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 5.7E-20 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 SUPERFAMILY SSF52172 1 118 5.83E-29 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 Gene3D G3DSA:1.10.10.10 127 209 1.5E-26 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 SUPERFAMILY SSF46894 132 206 8.84E-21 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 6.0E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 6.0E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 6.0E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 Pfam PF00072 Response regulator receiver domain 4 116 2.0E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 Gene3D G3DSA:3.40.50.2300 1 126 8.4E-30 T 28-03-2018 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 SMART SM00421 143 200 3.4E-21 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS23605 f066d637b8c2eaf9d35c56aa25d37e3a 209 SMART SM00448 2 115 2.3E-25 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS11980 58517f4a95b7b3d1239979c18bc5eca1 238 Gene3D G3DSA:3.40.50.880 1 236 9.6E-46 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS11980 58517f4a95b7b3d1239979c18bc5eca1 238 SUPERFAMILY SSF52317 2 214 1.39E-36 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS11980 58517f4a95b7b3d1239979c18bc5eca1 238 Pfam PF00117 Glutamine amidotransferase class-I 26 184 6.6E-15 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS01520 4cf46a0c97774d178c5d044a5aaa2799 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 7.3E-7 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS01520 4cf46a0c97774d178c5d044a5aaa2799 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 45 3.0E-7 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS01520 4cf46a0c97774d178c5d044a5aaa2799 198 Gene3D G3DSA:2.160.10.10 5 175 1.1E-36 T 28-03-2018 AM348_RS01520 4cf46a0c97774d178c5d044a5aaa2799 198 Hamap MF_01525 Carnitine operon protein CaiE [caiE]. 1 196 58.778 T 28-03-2018 IPR023446 Carnitine operon protein CaiE AM348_RS01520 4cf46a0c97774d178c5d044a5aaa2799 198 SUPERFAMILY SSF51161 3 166 5.96E-42 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS14035 7e7b7f7e7c80cc5104213a56e90e1e50 116 Pfam PF02288 Dehydratase medium subunit 8 111 4.1E-33 T 28-03-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor AM348_RS14035 7e7b7f7e7c80cc5104213a56e90e1e50 116 PIRSF PIRSF011503 1 114 1.3E-47 T 28-03-2018 IPR009192 Diol/glycerol dehydratase reactivating factor, small subunit AM348_RS14035 7e7b7f7e7c80cc5104213a56e90e1e50 116 SUPERFAMILY SSF52968 3 115 6.93E-39 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS14035 7e7b7f7e7c80cc5104213a56e90e1e50 116 Gene3D G3DSA:3.40.50.10150 5 115 6.6E-41 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 SMART SM00357 5 69 9.3E-31 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 SUPERFAMILY SSF50249 3 68 3.26E-26 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 PIRSF PIRSF002599 1 69 8.7E-26 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 3.0E-33 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 Gene3D G3DSA:2.40.50.140 4 69 7.0E-30 T 28-03-2018 AM348_RS15340 2438b21594d2be1ec72263acfe9ba76f 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 28-03-2018 IPR019844 Cold-shock conserved site AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 Pfam PF01584 CheW-like domain 21 163 4.6E-30 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 Gene3D G3DSA:2.30.30.40 109 148 3.3E-5 T 28-03-2018 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 PIRSF PIRSF002867 1 320 4.7E-105 T 28-03-2018 IPR024181 Chemotaxis response regulator CheV AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 Gene3D G3DSA:2.40.50.180 45 108 2.8E-10 T 28-03-2018 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 SMART SM00260 17 161 2.5E-13 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 SUPERFAMILY SSF52172 189 319 3.98E-21 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 Gene3D G3DSA:3.40.50.2300 180 324 9.5E-22 T 28-03-2018 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 SUPERFAMILY SSF50341 18 165 1.44E-24 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 SMART SM00448 187 312 1.4E-11 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12645 b338a0cbfc09625046c5847bb923c97b 334 Pfam PF00072 Response regulator receiver domain 190 311 2.0E-12 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 Gene3D G3DSA:1.10.1660.10 67 143 3.1E-10 T 28-03-2018 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 12 151 9.3E-74 T 28-03-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 SUPERFAMILY SSF46955 12 134 3.26E-28 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 ProSitePatterns PS00552 MerR-type HTH domain signature. 15 37 - T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 Pfam PF09278 MerR, DNA binding 54 119 1.0E-14 T 28-03-2018 IPR015358 Transcription regulator MerR, DNA binding AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 Pfam PF00376 MerR family regulatory protein 13 49 6.7E-14 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 SMART SM00422 12 80 4.5E-23 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 24 37 1.4E-11 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 47 67 1.4E-11 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 24 1.4E-11 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS03465 fcf533dd6390c2620d4a9022bcaa48b6 152 Gene3D G3DSA:1.10.1660.10 8 66 1.6E-18 T 28-03-2018 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 SMART SM01133 16 252 4.0E-80 T 28-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 Gene3D G3DSA:3.20.20.70 4 264 4.5E-81 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 PIRSF PIRSF001357 11 261 6.7E-77 T 28-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 SUPERFAMILY SSF51569 12 252 8.06E-82 T 28-03-2018 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 Pfam PF01791 DeoC/LacD family aldolase 17 251 3.4E-50 T 28-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 17 238 3.3E-86 T 28-03-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS01795 9a245dc8e52aba32d87603caa05d5bf4 265 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 7 265 54.147 T 28-03-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 Pfam PF03473 MOSC domain 138 262 2.1E-30 T 28-03-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 Pfam PF03476 MOSC N-terminal beta barrel domain 2 116 7.8E-27 T 28-03-2018 IPR005303 MOSC, N-terminal beta barrel AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 295 361 7.5E-13 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 Gene3D G3DSA:3.10.20.30 268 368 7.1E-16 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 SUPERFAMILY SSF141673 4 132 2.35E-27 T 28-03-2018 AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 SUPERFAMILY SSF50800 147 264 2.98E-17 T 28-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 SUPERFAMILY SSF50800 3 50 2.98E-17 T 28-03-2018 IPR011037 Pyruvate kinase-like, insert domain AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 Gene3D G3DSA:2.40.33.20 1 267 1.3E-51 T 28-03-2018 AM348_RS20590 1ba38983e655c43942dac5301df03ad4 368 SUPERFAMILY SSF54292 284 367 1.31E-20 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 SUPERFAMILY SSF53686 3 289 1.7E-93 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 Gene3D G3DSA:3.40.50.1100 129 303 1.8E-45 T 28-03-2018 AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 4.9E-168 T 28-03-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 1.5E-127 T 28-03-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 28-03-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 Gene3D G3DSA:3.40.50.1100 19 128 8.0E-35 T 28-03-2018 AM348_RS11975 72633a9980141ff5112e210f4e56b161 303 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 281 4.1E-69 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS14125 02c9eaf3dd9e4ca2b354d3151dfa1a35 261 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 5 235 1.6E-50 T 28-03-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AM348_RS14125 02c9eaf3dd9e4ca2b354d3151dfa1a35 261 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 6 239 2.8E-73 T 28-03-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 AM348_RS14125 02c9eaf3dd9e4ca2b354d3151dfa1a35 261 Gene3D G3DSA:3.40.50.2300 70 260 1.3E-11 T 28-03-2018 AM348_RS10580 ef88fb271e8d17bf4edf47541c905a99 111 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 104 1.2E-13 T 28-03-2018 IPR008407 Branched-chain amino acid transport, AzlD AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.2E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.2E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.2E-8 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 SUPERFAMILY SSF51735 3 242 1.87E-69 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 Gene3D G3DSA:3.40.50.720 161 242 1.9E-19 T 28-03-2018 AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 TIGRFAM TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase 5 243 1.1E-136 T 28-03-2018 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 Gene3D G3DSA:3.40.50.720 2 160 3.1E-39 T 28-03-2018 AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.1E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.1E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.1E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.1E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.1E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 2.1E-40 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06590 e25853e8f2a06c2d9437262ef7e770fb 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 242 2.0E-54 T 28-03-2018 AM348_RS15820 78e7d559be33f1b42e096747f51dcd82 393 SUPERFAMILY SSF52172 304 385 4.82E-16 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS15820 78e7d559be33f1b42e096747f51dcd82 393 Pfam PF08376 Nitrate and nitrite sensing 41 276 7.8E-40 T 28-03-2018 IPR013587 Nitrate/nitrite sensing protein AM348_RS15820 78e7d559be33f1b42e096747f51dcd82 393 Gene3D G3DSA:1.10.10.10 334 386 8.7E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15820 78e7d559be33f1b42e096747f51dcd82 393 Pfam PF03861 ANTAR domain 333 385 4.5E-19 T 28-03-2018 IPR005561 ANTAR domain GO:0003723 AM348_RS15820 78e7d559be33f1b42e096747f51dcd82 393 SMART SM01012 330 385 2.7E-22 T 28-03-2018 IPR005561 ANTAR domain GO:0003723 AM348_RS20500 753c8a374f60abb149858d8102efde03 137 Pfam PF13380 CoA binding domain 14 130 3.9E-40 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS20500 753c8a374f60abb149858d8102efde03 137 Gene3D G3DSA:3.40.50.720 10 134 4.6E-34 T 28-03-2018 AM348_RS20500 753c8a374f60abb149858d8102efde03 137 SMART SM00881 9 104 8.1E-27 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS20500 753c8a374f60abb149858d8102efde03 137 SUPERFAMILY SSF51735 4 135 2.1E-44 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 SUPERFAMILY SSF51658 4 438 1.04E-172 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 1.4E-217 T 28-03-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 133 153 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 229 253 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 180 201 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 207 226 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 300 311 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 271 298 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 333 344 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 156 175 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 PRINTS PR00688 Xylose isomerase signature 92 114 9.5E-86 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 53.473 T 28-03-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 AM348_RS06160 7063c914a30d069a4d1f791f4982e395 440 Gene3D G3DSA:3.20.20.150 2 440 7.2E-109 T 28-03-2018 AM348_RS20290 3167a6575a6ef6b7c9aa6950935fb2a8 355 SUPERFAMILY SSF81345 17 350 6.41E-76 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS20290 3167a6575a6ef6b7c9aa6950935fb2a8 355 Gene3D G3DSA:1.10.3470.10 16 355 9.0E-69 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS20290 3167a6575a6ef6b7c9aa6950935fb2a8 355 Pfam PF01032 FecCD transport family 30 350 1.2E-88 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 TIGRFAM TIGR01089 fucI: L-fucose isomerase 5 590 0.0 T 28-03-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 SUPERFAMILY SSF53743 2 355 4.71E-151 T 28-03-2018 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Gene3D G3DSA:3.40.50.1070 5 175 4.6E-70 T 28-03-2018 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Pfam PF07881 L-fucose isomerase, first N-terminal domain 7 174 1.1E-83 T 28-03-2018 IPR012888 L-fucose isomerase, N-terminal-1 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 SUPERFAMILY SSF50443 356 590 6.02E-127 T 28-03-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Gene3D G3DSA:3.20.14.10 341 589 8.4E-119 T 28-03-2018 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Hamap MF_01254 L-fucose isomerase [fucI]. 3 591 71.081 T 28-03-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Gene3D G3DSA:3.40.275.10 177 339 3.3E-62 T 28-03-2018 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Pfam PF07882 L-fucose isomerase, second N-terminal domain 175 354 2.7E-81 T 28-03-2018 IPR012889 L-fucose isomerase, N-terminal-2 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 AM348_RS09885 4da24a8c9990cabb16096b7a96852496 591 Pfam PF02952 L-fucose isomerase, C-terminal domain 390 554 6.6E-55 T 28-03-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 45 57 9.4E-40 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 132 153 9.4E-40 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 159 170 9.4E-40 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 85 108 9.4E-40 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 46 54 - T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 163 171 - T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 SUPERFAMILY SSF56925 27 171 2.3E-33 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 Pfam PF13505 Outer membrane protein beta-barrel domain 9 171 3.1E-22 T 28-03-2018 IPR027385 Outer membrane protein beta-barrel AM348_RS21155 2ae276673a4754ecebb7630134836fe5 171 Gene3D G3DSA:2.40.160.20 22 171 9.8E-22 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 Gene3D G3DSA:3.90.180.10 1 144 1.2E-43 T 28-03-2018 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 2.1E-28 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 28-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 SUPERFAMILY SSF51735 140 314 1.28E-31 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 Gene3D G3DSA:3.40.50.720 145 320 3.0E-29 T 28-03-2018 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 SMART SM00829 10 344 8.7E-5 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 Pfam PF00107 Zinc-binding dehydrogenase 172 306 9.0E-23 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS08240 ecf9023dbde4b0daa182ee86ac4e2497 347 SUPERFAMILY SSF50129 1 170 9.92E-49 T 28-03-2018 IPR011032 GroES-like AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 28-03-2018 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 SUPERFAMILY SSF53067 153 340 3.69E-50 T 28-03-2018 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Pfam PF06723 MreB/Mbl protein 11 338 1.5E-150 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Gene3D G3DSA:3.30.420.40 8 172 4.3E-42 T 28-03-2018 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Gene3D G3DSA:3.30.420.40 256 321 1.8E-8 T 28-03-2018 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Gene3D G3DSA:3.90.640.10 190 255 8.8E-28 T 28-03-2018 AM348_RS07715 73d2ba4e5d849d4bc6ef9989dcc9beba 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.6E-171 T 28-03-2018 IPR004753 Cell shape determining protein MreB GO:0000902 AM348_RS22800 621eeb2f97a6468ded1396c99e9ae293 276 Pfam PF03180 NLPA lipoprotein 32 259 1.5E-78 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS22800 621eeb2f97a6468ded1396c99e9ae293 276 Gene3D G3DSA:3.40.190.10 129 262 6.5E-36 T 28-03-2018 AM348_RS22800 621eeb2f97a6468ded1396c99e9ae293 276 SUPERFAMILY SSF53850 31 260 1.38E-66 T 28-03-2018 AM348_RS22800 621eeb2f97a6468ded1396c99e9ae293 276 Gene3D G3DSA:3.40.190.10 30 128 1.1E-18 T 28-03-2018 AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 PIRSF PIRSF006614 8 151 2.3E-66 T 28-03-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 Gene3D G3DSA:3.40.50.1380 1 152 9.8E-45 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 SUPERFAMILY SSF52335 2 147 2.49E-58 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 28-03-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 Pfam PF02142 MGS-like domain 26 118 1.6E-18 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 SMART SM00851 25 118 4.3E-25 T 28-03-2018 IPR011607 Methylglyoxal synthase-like domain AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 1.7E-73 T 28-03-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM348_RS20510 2676c5e041f4bd466ecf3e07034f0265 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 40.448 T 28-03-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 28-03-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 273 1.0E-62 T 28-03-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 416 5.9E-137 T 28-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 SUPERFAMILY SSF51419 25 275 5.67E-58 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 417 39.276 T 28-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 214 227 - T 28-03-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 Gene3D G3DSA:2.40.37.10 261 418 5.8E-45 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 374 387 5.6E-20 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 5.6E-20 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 263 282 5.6E-20 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 180 193 5.6E-20 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 5.6E-20 T 28-03-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 SUPERFAMILY SSF50621 248 417 9.63E-57 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 Gene3D G3DSA:3.20.20.10 36 260 3.8E-48 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 374 9.7E-25 T 28-03-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 9.8E-27 T 28-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01181 Diaminopimelate decarboxylase signature 291 309 9.8E-27 T 28-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01181 Diaminopimelate decarboxylase signature 155 164 9.8E-27 T 28-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS09690 8ea1fc049eaf1c298bc00190f0888e5b 418 PRINTS PR01181 Diaminopimelate decarboxylase signature 384 406 9.8E-27 T 28-03-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS05580 c18b95669497e5afe98125b9f73556d0 397 SUPERFAMILY SSF103473 12 390 7.85E-51 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05580 c18b95669497e5afe98125b9f73556d0 397 Gene3D G3DSA:1.20.1250.20 207 393 9.0E-14 T 28-03-2018 AM348_RS05580 c18b95669497e5afe98125b9f73556d0 397 Gene3D G3DSA:1.20.1250.20 12 206 2.1E-25 T 28-03-2018 AM348_RS05580 c18b95669497e5afe98125b9f73556d0 397 Pfam PF07690 Major Facilitator Superfamily 25 360 2.0E-33 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05580 c18b95669497e5afe98125b9f73556d0 397 Hamap MF_01189 Purine ribonucleoside efflux pump NepI [nepI]. 3 394 41.547 T 28-03-2018 IPR023680 Purine ribonucleoside efflux pump, NepI GO:0015211|GO:0015860|GO:0016021 AM348_RS13225 16b6d9e1de05dea45d65ed5cca90933f 79 Pfam PF10808 Protein of unknown function (DUF2542) 1 78 2.0E-23 T 28-03-2018 IPR020155 Uncharacterised protein family YeiS GO:0016021 AM348_RS13225 16b6d9e1de05dea45d65ed5cca90933f 79 ProDom PD058881 MEMBRANE TRANSMEMBRANE YEIS INNER 1 79 6.0E-12 T 28-03-2018 IPR020155 Uncharacterised protein family YeiS GO:0016021 AM348_RS03250 4aed618e4faf105fd01e2fbab1899944 338 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 35 277 3.9E-70 T 28-03-2018 AM348_RS03250 4aed618e4faf105fd01e2fbab1899944 338 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 4 291 1.3E-111 T 28-03-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 AM348_RS03250 4aed618e4faf105fd01e2fbab1899944 338 SUPERFAMILY SSF53850 54 248 5.44E-44 T 28-03-2018 AM348_RS03250 4aed618e4faf105fd01e2fbab1899944 338 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 4 254 2.2E-93 T 28-03-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 AM348_RS03250 4aed618e4faf105fd01e2fbab1899944 338 Gene3D G3DSA:3.40.190.10 28 126 1.7E-7 T 28-03-2018 AM348_RS03250 4aed618e4faf105fd01e2fbab1899944 338 Gene3D G3DSA:3.40.190.10 127 276 4.5E-29 T 28-03-2018 AM348_RS10230 cf197a0fd157f9c7210472abda1203a9 310 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 274 4.0E-31 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10230 cf197a0fd157f9c7210472abda1203a9 310 Gene3D G3DSA:3.40.190.10 39 171 2.4E-18 T 28-03-2018 AM348_RS10230 cf197a0fd157f9c7210472abda1203a9 310 SMART SM00062 44 276 9.3E-30 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10230 cf197a0fd157f9c7210472abda1203a9 310 Gene3D G3DSA:3.40.190.10 172 310 3.1E-14 T 28-03-2018 AM348_RS10230 cf197a0fd157f9c7210472abda1203a9 310 SUPERFAMILY SSF53850 12 277 3.41E-40 T 28-03-2018 AM348_RS08195 50d4a4c4c2b93931de34bf3c1f8f9f18 142 Gene3D G3DSA:2.30.110.10 1 141 6.0E-12 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS08195 50d4a4c4c2b93931de34bf3c1f8f9f18 142 SUPERFAMILY SSF50475 5 139 6.67E-14 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS08195 50d4a4c4c2b93931de34bf3c1f8f9f18 142 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 3 140 35.083 T 28-03-2018 IPR011194 Uncharacterised protein family UPF0306 AM348_RS08195 50d4a4c4c2b93931de34bf3c1f8f9f18 142 PIRSF PIRSF009554 1 142 8.3E-59 T 28-03-2018 IPR011194 Uncharacterised protein family UPF0306 AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 8 810 0.0 T 28-03-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 PIRSF PIRSF000379 52 810 2.1E-196 T 28-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 SUPERFAMILY SSF51998 7 808 9.16E-233 T 28-03-2018 AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 Pfam PF02901 Pyruvate formate lyase-like 10 671 4.9E-212 T 28-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 Pfam PF01228 Glycine radical 688 791 3.3E-29 T 28-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 ProSitePatterns PS00850 Glycine radical domain signature. 781 789 - T 28-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM348_RS21110 5eb55ba52b95ac740b7b7cb65d93fbf7 810 Gene3D G3DSA:3.20.70.20 9 810 8.1E-277 T 28-03-2018 AM348_RS06645 61a729a2d46a8f20894488b2ac1f55c5 83 Pfam PF00550 Phosphopantetheine attachment site 10 76 4.1E-13 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS06645 61a729a2d46a8f20894488b2ac1f55c5 83 SUPERFAMILY SSF47336 5 81 2.36E-18 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS06645 61a729a2d46a8f20894488b2ac1f55c5 83 Gene3D G3DSA:1.10.1200.10 5 82 6.8E-18 T 28-03-2018 AM348_RS06645 61a729a2d46a8f20894488b2ac1f55c5 83 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 13.993 T 28-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AM348_RS22040 5de0148917dc88ff4927475c662f3b74 512 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 495 24.066 T 28-03-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AM348_RS22040 5de0148917dc88ff4927475c662f3b74 512 SUPERFAMILY SSF56317 216 490 5.62E-36 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS22040 5de0148917dc88ff4927475c662f3b74 512 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 457 1.2E-117 T 28-03-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 AM348_RS22040 5de0148917dc88ff4927475c662f3b74 512 Pfam PF00795 Carbon-nitrogen hydrolase 224 478 2.2E-38 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS22040 5de0148917dc88ff4927475c662f3b74 512 Gene3D G3DSA:3.60.110.10 219 480 2.0E-35 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS13130 03b5d37777b92bf9a4c9906076d81ef6 432 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 363 3.6E-135 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS13130 03b5d37777b92bf9a4c9906076d81ef6 432 PIRSF PIRSF004539 1 432 6.9E-169 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS13130 03b5d37777b92bf9a4c9906076d81ef6 432 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 431 8.0E-151 T 28-03-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 AM348_RS16400 940f88aa27865eb21532a7211a567dc5 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 3.0E-101 T 28-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16400 940f88aa27865eb21532a7211a567dc5 268 SUPERFAMILY SSF51366 1 266 1.6E-91 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS16400 940f88aa27865eb21532a7211a567dc5 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 28-03-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16400 940f88aa27865eb21532a7211a567dc5 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 39.058 T 28-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16400 940f88aa27865eb21532a7211a567dc5 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 2.7E-110 T 28-03-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16400 940f88aa27865eb21532a7211a567dc5 268 Gene3D G3DSA:3.20.20.70 2 268 1.4E-72 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS16025 a4192b2c0d180c42d6634a156d041cc6 80 Pfam PF13269 Protein of unknown function (DUF4060) 3 77 2.7E-29 T 28-03-2018 IPR025135 Protein of unknown function DUF4060 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 Gene3D G3DSA:3.40.50.300 1 214 3.0E-68 T 28-03-2018 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.5E-16 T 28-03-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 SUPERFAMILY SSF52540 1 208 6.58E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.731 T 28-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 2.4E-76 T 28-03-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 Pfam PF00406 Adenylate kinase 5 186 6.5E-61 T 28-03-2018 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 PRINTS PR00094 Adenylate kinase signature 81 97 6.4E-36 T 28-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 PRINTS PR00094 Adenylate kinase signature 173 187 6.4E-36 T 28-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 PRINTS PR00094 Adenylate kinase signature 4 17 6.4E-36 T 28-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 PRINTS PR00094 Adenylate kinase signature 32 46 6.4E-36 T 28-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 PRINTS PR00094 Adenylate kinase signature 156 171 6.4E-36 T 28-03-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS22955 418c739e2e778b18492decc35be48ec0 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 28-03-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 AM348_RS16005 fed52cd7c5bfbd7526d1e5465a3b1c4e 109 Pfam PF04269 Protein of unknown function, DUF440 8 109 7.6E-47 T 28-03-2018 IPR007376 dsDNA mimic, putative AM348_RS16005 fed52cd7c5bfbd7526d1e5465a3b1c4e 109 Hamap MF_00680 UPF0263 protein YciU [yciU]. 5 109 35.426 T 28-03-2018 IPR007376 dsDNA mimic, putative AM348_RS16005 fed52cd7c5bfbd7526d1e5465a3b1c4e 109 SUPERFAMILY SSF102816 3 109 1.57E-50 T 28-03-2018 IPR007376 dsDNA mimic, putative AM348_RS16005 fed52cd7c5bfbd7526d1e5465a3b1c4e 109 PIRSF PIRSF004916 1 109 5.3E-57 T 28-03-2018 IPR007376 dsDNA mimic, putative AM348_RS16005 fed52cd7c5bfbd7526d1e5465a3b1c4e 109 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 7 109 1.0E-53 T 28-03-2018 IPR007376 dsDNA mimic, putative AM348_RS16005 fed52cd7c5bfbd7526d1e5465a3b1c4e 109 Gene3D G3DSA:3.10.450.140 10 108 1.1E-45 T 28-03-2018 IPR007376 dsDNA mimic, putative AM348_RS21425 908051208a7765d38de58d73d33218dc 352 SMART SM00382 23 206 6.3E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21425 908051208a7765d38de58d73d33218dc 352 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 288 351 1.5E-23 T 28-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 AM348_RS21425 908051208a7765d38de58d73d33218dc 352 Gene3D G3DSA:2.40.50.100 278 349 9.2E-22 T 28-03-2018 AM348_RS21425 908051208a7765d38de58d73d33218dc 352 SUPERFAMILY SSF50331 235 350 2.16E-21 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS21425 908051208a7765d38de58d73d33218dc 352 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 2.2E-161 T 28-03-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 AM348_RS21425 908051208a7765d38de58d73d33218dc 352 SUPERFAMILY SSF52540 8 219 1.3E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21425 908051208a7765d38de58d73d33218dc 352 Pfam PF03459 TOBE domain 290 350 7.9E-17 T 28-03-2018 IPR005116 Transport-associated OB, type 1 AM348_RS21425 908051208a7765d38de58d73d33218dc 352 Gene3D G3DSA:3.40.50.300 16 277 9.1E-55 T 28-03-2018 AM348_RS21425 908051208a7765d38de58d73d33218dc 352 Pfam PF00005 ABC transporter 18 156 5.4E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21425 908051208a7765d38de58d73d33218dc 352 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS01375 6376436683f5e835c711127fe2b1ee19 231 Hamap MF_00989 L-ribulose-5-phosphate 4-epimerase [araD]. 1 231 76.199 T 28-03-2018 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD GO:0008742|GO:0019569 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 AM348_RS01375 6376436683f5e835c711127fe2b1ee19 231 SUPERFAMILY SSF53639 1 223 8.24E-72 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS01375 6376436683f5e835c711127fe2b1ee19 231 SMART SM01007 7 198 1.1E-71 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS01375 6376436683f5e835c711127fe2b1ee19 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 5.8E-49 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS01375 6376436683f5e835c711127fe2b1ee19 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 1.6E-135 T 28-03-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 AM348_RS01375 6376436683f5e835c711127fe2b1ee19 231 Gene3D G3DSA:3.40.225.10 1 231 4.4E-61 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 SUPERFAMILY SSF51569 1 216 1.15E-63 T 28-03-2018 AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 3.0E-87 T 28-03-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 Gene3D G3DSA:3.20.20.70 1 220 5.9E-58 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 28-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 4.4E-45 T 28-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 Hamap MF_00496 Fructose-6-phosphate aldolase [fsa]. 1 220 50.402 T 28-03-2018 IPR023001 Fructose-6-phosphate aldolase GO:0016832 AM348_RS21100 c98ab447403885998213e3c76d7b1b81 220 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 28-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS11090 ffe0258cee063fb4d5801c39250e76bc 160 PRINTS PR01021 OMPA domain signature 101 117 7.5E-12 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS11090 ffe0258cee063fb4d5801c39250e76bc 160 PRINTS PR01021 OMPA domain signature 56 78 7.5E-12 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS11090 ffe0258cee063fb4d5801c39250e76bc 160 PRINTS PR01021 OMPA domain signature 86 101 7.5E-12 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS11090 ffe0258cee063fb4d5801c39250e76bc 160 Pfam PF00691 OmpA family 55 151 2.3E-19 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS11090 ffe0258cee063fb4d5801c39250e76bc 160 Gene3D G3DSA:3.30.1330.60 23 160 1.6E-31 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS11090 ffe0258cee063fb4d5801c39250e76bc 160 SUPERFAMILY SSF103088 45 157 2.49E-29 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 SUPERFAMILY SSF111369 40 129 9.68E-9 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 Gene3D G3DSA:1.20.1600.10 178 316 2.0E-7 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 Gene3D G3DSA:1.10.287.470 116 177 5.2E-8 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 Gene3D G3DSA:2.40.50.100 47 115 7.7E-13 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 SUPERFAMILY SSF111369 117 177 9.29E-5 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 Pfam PF13437 HlyD family secretion protein 214 318 2.8E-13 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 327 342 3.9E-5 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 58 78 3.9E-5 T 28-03-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 Pfam PF13533 Biotin-lipoyl like 48 94 1.1E-9 T 28-03-2018 AM348_RS06545 f112398eec03af4f9db14a497df829b4 355 SUPERFAMILY SSF111369 172 263 1.31E-5 T 28-03-2018 AM348_RS06970 16d0f47ceab8ad75b5c56d33e0f7f3e3 256 SUPERFAMILY SSF53474 4 254 2.91E-46 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS06970 16d0f47ceab8ad75b5c56d33e0f7f3e3 256 Pfam PF00561 alpha/beta hydrolase fold 15 242 9.0E-28 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS06970 16d0f47ceab8ad75b5c56d33e0f7f3e3 256 Gene3D G3DSA:3.40.50.1820 2 255 1.4E-51 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS06970 16d0f47ceab8ad75b5c56d33e0f7f3e3 256 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 252 3.1E-115 T 28-03-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 AM348_RS06970 16d0f47ceab8ad75b5c56d33e0f7f3e3 256 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 47.107 T 28-03-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 AM348_RS18245 50d136bc958cdf21b607e621f6caa00c 115 SUPERFAMILY SSF52833 2 104 1.22E-35 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS18245 50d136bc958cdf21b607e621f6caa00c 115 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 7.0E-47 T 28-03-2018 IPR004480 Monothiol glutaredoxin-related AM348_RS18245 50d136bc958cdf21b607e621f6caa00c 115 Pfam PF00462 Glutaredoxin 17 81 1.1E-18 T 28-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM348_RS18245 50d136bc958cdf21b607e621f6caa00c 115 PIRSF PIRSF005894 1 108 2.4E-52 T 28-03-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 AM348_RS18245 50d136bc958cdf21b607e621f6caa00c 115 Gene3D G3DSA:3.40.30.10 3 115 1.7E-30 T 28-03-2018 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 SUPERFAMILY SSF50814 15 176 5.92E-49 T 28-03-2018 IPR012674 Calycin AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 ProSitePatterns PS00213 Lipocalin signature. 33 46 - T 28-03-2018 IPR022272 Lipocalin family conserved site AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 Gene3D G3DSA:2.40.128.20 2 177 7.8E-45 T 28-03-2018 IPR012674 Calycin AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 104 118 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 163 173 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 136 147 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 121 129 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 34 48 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 51 67 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PRINTS PR01171 Bacterial lipocalin signature 70 79 6.1E-51 T 28-03-2018 IPR002446 Lipocalin, bacterial GO:0005215 AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 Pfam PF08212 Lipocalin-like domain 35 174 7.0E-47 T 28-03-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain AM348_RS02995 242daac0a123d6e504da8db7831e006e 177 PIRSF PIRSF036893 1 177 5.1E-53 T 28-03-2018 IPR022271 Lipocalin, ApoD type AM348_RS09490 377af35434e1ea3c8d0ff5e01f3c8c4c 88 Gene3D G3DSA:1.10.150.250 1 85 1.3E-27 T 28-03-2018 AM348_RS09490 377af35434e1ea3c8d0ff5e01f3c8c4c 88 SUPERFAMILY SSF109910 1 78 2.09E-27 T 28-03-2018 IPR005631 Flavinator of succinate dehydrogenase AM348_RS09490 377af35434e1ea3c8d0ff5e01f3c8c4c 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 7.9E-26 T 28-03-2018 IPR005631 Flavinator of succinate dehydrogenase AM348_RS12500 f4127c27f1c85258b4c71a18eccf9827 297 Gene3D G3DSA:3.40.50.720 2 297 8.5E-39 T 28-03-2018 AM348_RS12500 f4127c27f1c85258b4c71a18eccf9827 297 SUPERFAMILY SSF51735 1 296 6.58E-45 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS12500 f4127c27f1c85258b4c71a18eccf9827 297 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 292 2.4E-107 T 28-03-2018 IPR010099 Epimerase family protein SDR39U1 AM348_RS12500 f4127c27f1c85258b4c71a18eccf9827 297 Pfam PF08338 Domain of unknown function (DUF1731) 249 295 4.1E-19 T 28-03-2018 IPR013549 Domain of unknown function DUF1731 AM348_RS12500 f4127c27f1c85258b4c71a18eccf9827 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 214 9.8E-24 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Gene3D G3DSA:3.40.50.1220 217 364 1.5E-16 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Gene3D G3DSA:3.40.50.970 365 551 1.4E-23 T 28-03-2018 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 PIRSF PIRSF004983 1 556 2.4E-184 T 28-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 388 4.0E-85 T 28-03-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 SUPERFAMILY SSF52518 7 174 3.91E-32 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 SUPERFAMILY SSF52518 368 552 6.37E-34 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 415 534 9.9E-9 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 430 2.1E-138 T 28-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Gene3D G3DSA:3.40.50.970 1 204 4.8E-54 T 28-03-2018 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 553 32.707 T 28-03-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 AM348_RS12670 392be0880b75090164ddec1b13ddad3d 556 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 170 6.7E-28 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS20260 0aed1127f0c094fbee5ecd6d7c516dbe 228 Pfam PF00027 Cyclic nucleotide-binding domain 36 122 1.1E-11 T 28-03-2018 IPR000595 Cyclic nucleotide-binding domain AM348_RS20260 0aed1127f0c094fbee5ecd6d7c516dbe 228 Gene3D G3DSA:2.60.120.10 6 145 2.0E-17 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS20260 0aed1127f0c094fbee5ecd6d7c516dbe 228 SUPERFAMILY SSF51206 22 143 6.68E-22 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS20260 0aed1127f0c094fbee5ecd6d7c516dbe 228 Gene3D G3DSA:1.10.10.10 146 227 8.4E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 Gene3D G3DSA:3.60.21.10 13 344 2.0E-79 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 Gene3D G3DSA:3.90.780.10 345 605 8.2E-50 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 Pfam PF02872 5'-nucleotidase, C-terminal domain 355 550 4.6E-22 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 28-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 ProSitePatterns PS00785 5'-nucleotidase signature 1. 24 36 - T 28-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 PRINTS PR01607 Apyrase family signature 243 266 3.1E-32 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 PRINTS PR01607 Apyrase family signature 530 549 3.1E-32 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 PRINTS PR01607 Apyrase family signature 428 451 3.1E-32 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 PRINTS PR01607 Apyrase family signature 283 303 3.1E-32 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 PRINTS PR01607 Apyrase family signature 22 40 3.1E-32 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 PRINTS PR01607 Apyrase family signature 215 232 3.1E-32 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 22 647 0.0 T 28-03-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 SUPERFAMILY SSF55816 355 597 1.44E-39 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 Pfam PF00149 Calcineurin-like phosphoesterase 24 259 4.3E-12 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS02695 79a837c8ef2d3043feb0d78e96bc405b 647 SUPERFAMILY SSF56300 19 353 2.47E-87 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS20730 603b66bbfc01ca7143526a415b40afaa 325 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 313 3.7E-113 T 28-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 AM348_RS20730 603b66bbfc01ca7143526a415b40afaa 325 SUPERFAMILY SSF52540 46 162 3.06E-12 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20730 603b66bbfc01ca7143526a415b40afaa 325 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 320 2.8E-119 T 28-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 AM348_RS20730 603b66bbfc01ca7143526a415b40afaa 325 Gene3D G3DSA:3.40.50.300 33 262 3.3E-8 T 28-03-2018 AM348_RS20730 603b66bbfc01ca7143526a415b40afaa 325 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 40.904 T 28-03-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 AM348_RS08570 7e21f4f014222b0da380da8409688abe 142 Pfam PF03928 Haem-degrading 10 136 3.8E-32 T 28-03-2018 IPR005624 Haem-degrading AM348_RS08570 7e21f4f014222b0da380da8409688abe 142 SUPERFAMILY SSF143744 5 139 7.32E-42 T 28-03-2018 AM348_RS16515 7a00cedb1863d5f9ae915ca3805a865b 72 Pfam PF05433 Glycine zipper 2TM domain 34 71 2.0E-7 T 28-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM348_RS16515 7a00cedb1863d5f9ae915ca3805a865b 72 ProDom PD052686 LIPOPROTEIN INDUCIBLE OSMOTICALLY B PRECURSOR SIGNAL MEMBRANE PALMITATE TRANSMEMBRANE SURFACE 12 50 7.0E-7 T 28-03-2018 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 Pfam PF02163 Peptidase family M50 10 438 1.5E-87 T 28-03-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889|Reactome: R-MMU-8963889 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 Gene3D G3DSA:2.30.42.10 126 220 2.1E-13 T 28-03-2018 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 SMART SM00228 115 186 0.0013 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 SMART SM00228 211 280 9.6E-11 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 Gene3D G3DSA:2.30.42.10 221 309 1.6E-18 T 28-03-2018 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 SUPERFAMILY SSF50156 87 186 2.5E-13 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 210 258 3.0E-8 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 SUPERFAMILY SSF50156 195 290 6.7E-17 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS00735 b6efafc781c29980b4344d106726a461 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 450 1.7E-170 T 28-03-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 ProSitePatterns PS00380 Rhodanese signature 1. 181 192 - T 28-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 Gene3D G3DSA:3.40.250.10 139 283 1.9E-26 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 SUPERFAMILY SSF52821 141 275 2.75E-26 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 SUPERFAMILY SSF52821 33 126 2.49E-7 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 Gene3D G3DSA:3.40.250.10 21 132 2.4E-7 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 SUPERFAMILY SSF52821 288 428 3.14E-30 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 ProSitePatterns PS00683 Rhodanese C-terminal signature. 406 416 - T 28-03-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 SMART SM00450 26 139 0.82 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 SMART SM00450 294 422 7.1E-15 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 SMART SM00450 146 267 9.6E-16 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 Gene3D G3DSA:3.40.250.10 284 435 7.0E-26 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 Pfam PF00581 Rhodanese-like domain 297 418 2.1E-11 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS19070 6e3c09b482215e332fbac5b021750560 435 Pfam PF00581 Rhodanese-like domain 179 262 3.0E-11 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS03410 4f4ba81c662f3dd7cb0d8bd61647e961 188 Pfam PF13435 Cytochrome c554 and c-prime 38 83 0.016 T 28-03-2018 IPR023155 Cytochrome c-552/4 AM348_RS03410 4f4ba81c662f3dd7cb0d8bd61647e961 188 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 133 171 9.6E-5 T 28-03-2018 IPR010177 Doubled CXXCH motif AM348_RS03410 4f4ba81c662f3dd7cb0d8bd61647e961 188 SUPERFAMILY SSF48695 5 169 3.01E-32 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS03410 4f4ba81c662f3dd7cb0d8bd61647e961 188 Gene3D G3DSA:1.10.3820.10 108 183 1.1E-9 T 28-03-2018 AM348_RS03410 4f4ba81c662f3dd7cb0d8bd61647e961 188 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 38 171 5.8E-59 T 28-03-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 AM348_RS03410 4f4ba81c662f3dd7cb0d8bd61647e961 188 Gene3D G3DSA:3.90.10.10 22 107 2.9E-9 T 28-03-2018 AM348_RS05635 3ecb3a837fb460aa3bb4eae634f346a6 300 SUPERFAMILY SSF103481 191 296 7.06E-13 T 28-03-2018 AM348_RS05635 3ecb3a837fb460aa3bb4eae634f346a6 300 Pfam PF00892 EamA-like transporter family 158 290 3.5E-21 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS05635 3ecb3a837fb460aa3bb4eae634f346a6 300 Pfam PF00892 EamA-like transporter family 6 145 3.1E-19 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS05635 3ecb3a837fb460aa3bb4eae634f346a6 300 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 18 287 2.3E-74 T 28-03-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 AM348_RS05635 3ecb3a837fb460aa3bb4eae634f346a6 300 SUPERFAMILY SSF103481 43 148 1.31E-6 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 TIGRFAM TIGR02164 torA: trimethylamine-N-oxide reductase TorA 7 833 0.0 T 28-03-2018 IPR011887 Trimethylamine-N-oxide reductase TorA GO:0030151|GO:0042597|GO:0050626 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 SUPERFAMILY SSF50692 682 830 5.88E-43 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Gene3D G3DSA:3.40.228.10 472 528 0.0053 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Gene3D G3DSA:3.40.228.10 608 668 3.3E-9 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Pfam PF01568 Molydopterin dinucleotide binding domain 688 809 7.3E-24 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Gene3D G3DSA:2.40.40.20 669 826 9.8E-31 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 513 530 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 54 833 0.0 T 28-03-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Pfam PF00384 Molybdopterin oxidoreductase 97 570 8.4E-103 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Gene3D G3DSA:3.40.228.10 186 434 2.0E-50 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 SUPERFAMILY SSF53706 55 672 2.22E-159 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 728 755 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Gene3D G3DSA:3.90.55.10 48 134 2.7E-16 T 28-03-2018 AM348_RS22655 3f5281ac435caca25e0fe6bca59f9337 846 Gene3D G3DSA:3.90.55.10 536 607 2.2E-22 T 28-03-2018 AM348_RS16680 23f6b693301dd2ab44e035c03a00fe8c 94 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 88 4.9E-29 T 28-03-2018 IPR009778 Modulator of Rho-dependent transcription termination AM348_RS16680 23f6b693301dd2ab44e035c03a00fe8c 94 SUPERFAMILY SSF101744 1 89 2.41E-25 T 28-03-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 AM348_RS16680 23f6b693301dd2ab44e035c03a00fe8c 94 Gene3D G3DSA:2.30.30.400 10 88 1.7E-28 T 28-03-2018 AM348_RS11540 9339be3a83fdd997543c5a1c87d1e395 66 PIRSF PIRSF039003 3 66 6.9E-33 T 28-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM348_RS11540 9339be3a83fdd997543c5a1c87d1e395 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 1.4E-32 T 28-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM348_RS11540 9339be3a83fdd997543c5a1c87d1e395 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 2.1E-32 T 28-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM348_RS11540 9339be3a83fdd997543c5a1c87d1e395 66 Gene3D G3DSA:1.10.10.600 2 64 2.8E-34 T 28-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM348_RS11540 9339be3a83fdd997543c5a1c87d1e395 66 SUPERFAMILY SSF140319 3 64 7.06E-27 T 28-03-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 SMART SM00981 75 165 3.0E-26 T 28-03-2018 IPR004114 THUMP domain GO:0003723 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 377 4.6E-142 T 28-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Gene3D G3DSA:3.30.70.1510 2 82 1.3E-21 T 28-03-2018 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Gene3D G3DSA:3.40.250.10 405 481 7.5E-10 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Pfam PF02926 THUMP domain 28 161 7.8E-27 T 28-03-2018 IPR004114 THUMP domain GO:0003723 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 3.3E-80 T 28-03-2018 IPR020536 Thil, AANH domain GO:0004810 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 231.753 T 28-03-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 382 482 2.6E-40 T 28-03-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 SUPERFAMILY SSF52402 174 372 1.46E-41 T 28-03-2018 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 SUPERFAMILY SSF143437 1 173 4.36E-50 T 28-03-2018 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 SUPERFAMILY SSF52821 403 481 4.55E-9 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Gene3D G3DSA:3.30.2300.10 84 162 2.4E-21 T 28-03-2018 AM348_RS23280 9a1e1aa08b5d30695126bda53939ce75 482 Gene3D G3DSA:3.40.50.620 175 400 6.9E-28 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 Gene3D G3DSA:3.40.50.620 1 212 1.1E-65 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 6 361 40.909 T 28-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 6 360 4.6E-159 T 28-03-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 Gene3D G3DSA:2.40.30.10 282 365 4.1E-28 T 28-03-2018 AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 SUPERFAMILY SSF52402 4 295 5.73E-57 T 28-03-2018 AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 Pfam PF03054 tRNA methyl transferase 6 360 2.5E-143 T 28-03-2018 AM348_RS19385 acc426ee48a1962af8497b53017cccfa 368 Gene3D G3DSA:2.30.30.280 213 280 6.2E-29 T 28-03-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 AM348_RS22975 a0677c4e2ec6f387a0c4813ef16d3065 109 Gene3D G3DSA:3.30.1310.10 1 109 1.6E-45 T 28-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM348_RS22975 a0677c4e2ec6f387a0c4813ef16d3065 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 3.8E-42 T 28-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM348_RS22975 a0677c4e2ec6f387a0c4813ef16d3065 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 6.6E-35 T 28-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM348_RS22975 a0677c4e2ec6f387a0c4813ef16d3065 109 SUPERFAMILY SSF82607 11 103 4.71E-36 T 28-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM348_RS22975 a0677c4e2ec6f387a0c4813ef16d3065 109 PIRSF PIRSF004555 3 109 9.9E-39 T 28-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM348_RS22975 a0677c4e2ec6f387a0c4813ef16d3065 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.194 T 28-03-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 9 330 53.019 T 28-03-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 PIRSF PIRSF006621 3 328 3.9E-72 T 28-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 Pfam PF01207 Dihydrouridine synthase (Dus) 17 326 1.2E-99 T 28-03-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 28-03-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 SUPERFAMILY SSF51395 13 322 8.96E-72 T 28-03-2018 AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 14 329 7.7E-173 T 28-03-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 AM348_RS03555 f5b747a19c5b1a6d425300f84160f5d2 332 Gene3D G3DSA:3.20.20.70 11 252 1.3E-40 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS06950 a25c41d056d89db97ac0739dca1fcd97 695 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 101 686 2.8E-283 T 28-03-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AM348_RS06950 a25c41d056d89db97ac0739dca1fcd97 695 SUPERFAMILY SSF51445 609 682 3.07E-145 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06950 a25c41d056d89db97ac0739dca1fcd97 695 SUPERFAMILY SSF51445 143 571 3.07E-145 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS06950 a25c41d056d89db97ac0739dca1fcd97 695 Pfam PF02446 4-alpha-glucanotransferase 149 665 6.3E-130 T 28-03-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 AM348_RS06950 a25c41d056d89db97ac0739dca1fcd97 695 Gene3D G3DSA:3.20.20.80 139 687 4.4E-155 T 28-03-2018 AM348_RS17005 964f6d0c35dc84145d406baeffab9af9 300 Gene3D G3DSA:3.90.1640.10 1 186 6.1E-46 T 28-03-2018 AM348_RS17005 964f6d0c35dc84145d406baeffab9af9 300 Pfam PF02833 DHHA2 domain 181 293 1.3E-15 T 28-03-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS17005 964f6d0c35dc84145d406baeffab9af9 300 SUPERFAMILY SSF64182 1 294 3.14E-54 T 28-03-2018 AM348_RS17005 964f6d0c35dc84145d406baeffab9af9 300 SMART SM01131 179 296 2.3E-31 T 28-03-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS17005 964f6d0c35dc84145d406baeffab9af9 300 Pfam PF01368 DHH family 2 142 3.7E-14 T 28-03-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS06555 1daaf9e867c1eec20f7c30d15e35a4a5 374 Gene3D G3DSA:3.40.1710.10 44 192 7.8E-22 T 28-03-2018 AM348_RS06555 1daaf9e867c1eec20f7c30d15e35a4a5 374 Pfam PF12698 ABC-2 family transporter protein 27 363 1.3E-32 T 28-03-2018 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 Pfam PF02872 5'-nucleotidase, C-terminal domain 335 476 3.0E-41 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 Gene3D G3DSA:3.90.780.10 328 517 2.0E-53 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 Pfam PF00149 Calcineurin-like phosphoesterase 24 252 2.1E-11 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 SUPERFAMILY SSF56300 18 326 4.46E-72 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 Gene3D G3DSA:3.60.21.10 17 327 1.3E-74 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 ProSitePatterns PS00786 5'-nucleotidase signature 2. 102 113 - T 28-03-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 PRINTS PR01607 Apyrase family signature 21 39 7.6E-21 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 PRINTS PR01607 Apyrase family signature 200 217 7.6E-21 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 PRINTS PR01607 Apyrase family signature 235 258 7.6E-21 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 PRINTS PR01607 Apyrase family signature 380 403 7.6E-21 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 PRINTS PR01607 Apyrase family signature 450 469 7.6E-21 T 28-03-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS04220 dba99ae47113ba5ced3212ae70ea24f1 518 SUPERFAMILY SSF55816 326 506 9.03E-50 T 28-03-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 AM348_RS15590 75fd7372f6d8138349478ed49f8ae572 253 SMART SM00382 29 217 1.0E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15590 75fd7372f6d8138349478ed49f8ae572 253 Pfam PF00005 ABC transporter 20 168 2.1E-29 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS15590 75fd7372f6d8138349478ed49f8ae572 253 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS15590 75fd7372f6d8138349478ed49f8ae572 253 Gene3D G3DSA:3.40.50.300 1 244 7.3E-56 T 28-03-2018 AM348_RS15590 75fd7372f6d8138349478ed49f8ae572 253 SUPERFAMILY SSF52540 16 222 3.07E-56 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03475 6deb0b485505e0a43e1e9bc1ae300338 528 Pfam PF00563 EAL domain 274 505 1.8E-66 T 28-03-2018 IPR001633 EAL domain AM348_RS03475 6deb0b485505e0a43e1e9bc1ae300338 528 SMART SM00052 267 511 2.6E-104 T 28-03-2018 IPR001633 EAL domain AM348_RS03475 6deb0b485505e0a43e1e9bc1ae300338 528 Pfam PF12792 CSS motif domain associated with EAL 39 241 1.6E-37 T 28-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM348_RS03475 6deb0b485505e0a43e1e9bc1ae300338 528 SUPERFAMILY SSF141868 274 518 6.54E-76 T 28-03-2018 IPR001633 EAL domain AM348_RS03475 6deb0b485505e0a43e1e9bc1ae300338 528 Gene3D G3DSA:3.20.20.450 269 525 4.2E-83 T 28-03-2018 IPR001633 EAL domain AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Gene3D G3DSA:2.40.50.140 49 116 6.0E-32 T 28-03-2018 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 SUPERFAMILY SSF68912 1 46 2.0E-12 T 28-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 SMART SM00382 170 355 5.0E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 SUPERFAMILY SSF50249 48 125 9.0E-30 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 4.3E-17 T 28-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.0E-222 T 28-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 SMART SM00357 52 118 9.6E-19 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Gene3D G3DSA:1.10.720.10 1 43 1.9E-13 T 28-03-2018 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 2.7E-32 T 28-03-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 252.259 T 28-03-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Gene3D G3DSA:3.40.50.300 129 419 5.9E-58 T 28-03-2018 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 8.1E-23 T 28-03-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 SMART SM00959 5 47 6.9E-18 T 28-03-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 AM348_RS05040 ad1a8af67b9c891d8755099b984fd1ea 419 SUPERFAMILY SSF52540 90 371 1.22E-68 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 Pfam PF03880 DbpA RNA binding domain 384 454 9.0E-21 T 28-03-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 Pfam PF00270 DEAD/DEAH box helicase 27 191 6.8E-43 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 Gene3D G3DSA:3.40.50.300 9 216 7.8E-56 T 28-03-2018 AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 28-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 SMART SM00490 255 336 3.7E-28 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 5 457 70.37 T 28-03-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 SMART SM00487 22 219 4.8E-56 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 Gene3D G3DSA:3.40.50.300 217 450 5.5E-42 T 28-03-2018 AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 Pfam PF00271 Helicase conserved C-terminal domain 228 336 2.3E-27 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS16760 89a90f252e3efe39d8acb59749b96f71 457 SUPERFAMILY SSF52540 73 350 2.39E-69 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22100 211627e17d922baede09e9381a241ceb 203 PIRSF PIRSF000709 1 178 2.4E-14 T 28-03-2018 AM348_RS22100 211627e17d922baede09e9381a241ceb 203 SUPERFAMILY SSF53254 1 199 7.33E-57 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS22100 211627e17d922baede09e9381a241ceb 203 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 194 8.9E-55 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS22100 211627e17d922baede09e9381a241ceb 203 Gene3D G3DSA:3.40.50.1240 1 203 3.2E-52 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS22100 211627e17d922baede09e9381a241ceb 203 SMART SM00855 2 156 3.6E-23 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS22100 211627e17d922baede09e9381a241ceb 203 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 3 181 1.1E-58 T 28-03-2018 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS22100 211627e17d922baede09e9381a241ceb 203 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 28-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 253 439 1.6E-26 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 Hamap MF_01535 Rhamnulokinase [rhaB]. 6 483 53.232 T 28-03-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 7 460 1.0E-231 T 28-03-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 Gene3D G3DSA:3.30.420.40 1 235 2.5E-45 T 28-03-2018 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 Gene3D G3DSA:3.30.420.40 236 486 2.1E-40 T 28-03-2018 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 SUPERFAMILY SSF53067 6 245 4.6E-48 T 28-03-2018 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 243 8.0E-28 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS04440 a22672bca3bc0f4fc47993e005536aed 489 SUPERFAMILY SSF53067 249 479 1.17E-32 T 28-03-2018 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 PIRSF PIRSF001386 1 456 4.6E-211 T 28-03-2018 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 247 265 - T 28-03-2018 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 Hamap MF_00543 Tyrosine phenol-lyase [tpl]. 1 456 79.564 T 28-03-2018 IPR013441 Tyrosine phenol-lyase GO:0006570|GO:0050371 KEGG: 00350+4.1.99.2 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 SUPERFAMILY SSF53383 1 456 3.77E-135 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 Pfam PF01212 Beta-eliminating lyase 46 422 1.4E-97 T 28-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 TIGRFAM TIGR02618 tyr_phenol_ly: tyrosine phenol-lyase 5 454 4.0E-288 T 28-03-2018 IPR013441 Tyrosine phenol-lyase GO:0006570|GO:0050371 KEGG: 00350+4.1.99.2 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 Gene3D G3DSA:3.90.1150.10 17 151 4.3E-34 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS02135 de0a9b4971de1deb0fade7cdef649cd3 456 Gene3D G3DSA:3.90.1150.10 273 454 3.4E-73 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 3.9E-11 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 Gene3D G3DSA:3.90.1150.10 393 490 1.7E-19 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 4.5E-5 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 4.5E-5 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 Gene3D G3DSA:1.10.10.10 8 86 6.8E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 SMART SM00345 25 84 1.6E-8 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 SUPERFAMILY SSF46785 15 86 2.41E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 Gene3D G3DSA:3.40.640.10 145 392 2.3E-42 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 SUPERFAMILY SSF53383 126 486 4.64E-86 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS18480 8f3704cf0a8cc62e4eeed78e944ad1b3 491 Pfam PF00155 Aminotransferase class I and II 143 479 3.7E-25 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 SUPERFAMILY SSF81343 2 129 3.6E-35 T 28-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 28-03-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 3.7E-40 T 28-03-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 PIRSF PIRSF000178 1 129 3.1E-31 T 28-03-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 5.4E-30 T 28-03-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 28-03-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21735 06ff589e430bf06ef37ba61d9da91794 129 Gene3D G3DSA:1.20.1300.10 1 129 2.7E-28 T 28-03-2018 AM348_RS21665 56c844306c3dd5937cb8daae4983a3a3 214 SUPERFAMILY SSF53639 1 210 1.81E-61 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS21665 56c844306c3dd5937cb8daae4983a3a3 214 SMART SM01007 11 190 9.8E-57 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS21665 56c844306c3dd5937cb8daae4983a3a3 214 Gene3D G3DSA:3.40.225.10 5 201 1.7E-52 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS21665 56c844306c3dd5937cb8daae4983a3a3 214 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 190 2.1E-44 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS13080 d61b3b8c95bc634cc92ff935251a86d7 377 Gene3D G3DSA:1.10.1130.10 102 376 1.0E-20 T 28-03-2018 AM348_RS13080 d61b3b8c95bc634cc92ff935251a86d7 377 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 6 175 9.0E-60 T 28-03-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AM348_RS13080 d61b3b8c95bc634cc92ff935251a86d7 377 Gene3D G3DSA:1.10.1130.10 16 101 5.5E-7 T 28-03-2018 AM348_RS13080 d61b3b8c95bc634cc92ff935251a86d7 377 SUPERFAMILY SSF48695 13 176 1.08E-42 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS13080 d61b3b8c95bc634cc92ff935251a86d7 377 PIRSF PIRSF000014 1 376 1.8E-133 T 28-03-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 AM348_RS08480 99c7d5aa961509fe33c421592c4b1205 477 PIRSF PIRSF006060 1 476 1.9E-52 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS08480 99c7d5aa961509fe33c421592c4b1205 477 Pfam PF13520 Amino acid permease 11 443 1.2E-29 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS09415 646f6f6beb497854f4e89b0d35027013 194 Pfam PF03695 Uncharacterised protein family (UPF0149) 14 179 1.3E-39 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS09415 646f6f6beb497854f4e89b0d35027013 194 SUPERFAMILY SSF101327 9 178 1.44E-53 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS09415 646f6f6beb497854f4e89b0d35027013 194 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 8 192 37.546 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS09415 646f6f6beb497854f4e89b0d35027013 194 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 19 168 6.3E-13 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS10460 bf07f8c48089b6e0e80725aecf168003 119 PIRSF PIRSF011474 1 119 1.3E-45 T 28-03-2018 IPR009693 Glucitol operon activator AM348_RS10460 bf07f8c48089b6e0e80725aecf168003 119 Pfam PF06923 Glucitol operon activator protein (GutM) 5 110 9.2E-35 T 28-03-2018 IPR009693 Glucitol operon activator AM348_RS10615 ecaa7b910c6288dedc38218124e5be02 319 Pfam PF00268 Ribonucleotide reductase, small chain 9 280 1.1E-84 T 28-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10615 ecaa7b910c6288dedc38218124e5be02 319 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 97 113 - T 28-03-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10615 ecaa7b910c6288dedc38218124e5be02 319 SUPERFAMILY SSF47240 6 319 8.92E-101 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS10615 ecaa7b910c6288dedc38218124e5be02 319 PIRSF PIRSF000355 1 316 6.1E-78 T 28-03-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS10615 ecaa7b910c6288dedc38218124e5be02 319 Gene3D G3DSA:1.10.620.20 1 292 1.7E-74 T 28-03-2018 AM348_RS10615 ecaa7b910c6288dedc38218124e5be02 319 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 7 319 8.6E-144 T 28-03-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS02760 f9a4d13be80c699c43726cfd86c067ba 104 PIRSF PIRSF003135 1 101 9.3E-50 T 28-03-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 AM348_RS02760 f9a4d13be80c699c43726cfd86c067ba 104 Hamap MF_00720 Primosomal replication protein N [priB]. 2 100 23.714 T 28-03-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 AM348_RS02760 f9a4d13be80c699c43726cfd86c067ba 104 Gene3D G3DSA:2.40.50.140 2 104 3.8E-12 T 28-03-2018 AM348_RS02760 f9a4d13be80c699c43726cfd86c067ba 104 SUPERFAMILY SSF50249 1 103 1.03E-28 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS02760 f9a4d13be80c699c43726cfd86c067ba 104 Pfam PF00436 Single-strand binding protein family 3 87 5.3E-12 T 28-03-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 AM348_RS02760 f9a4d13be80c699c43726cfd86c067ba 104 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 3 99 1.4E-35 T 28-03-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 Pfam PF02803 Thiolase, C-terminal domain 272 393 3.4E-50 T 28-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 28-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 Gene3D G3DSA:3.40.47.10 1 151 4.6E-36 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 Gene3D G3DSA:3.40.47.10 156 267 2.1E-26 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 SUPERFAMILY SSF53901 273 393 1.71E-42 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 392 1.7E-151 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 SUPERFAMILY SSF53901 3 271 6.26E-91 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 28-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 PIRSF PIRSF000429 1 395 1.1E-133 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 Pfam PF00108 Thiolase, N-terminal domain 4 263 2.2E-106 T 28-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 Gene3D G3DSA:3.40.47.10 268 391 2.7E-32 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS17445 4a3624f10e23b7d40305dd65ed01bd1d 401 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 28-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 11 45 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 SMART SM01134 76 237 1.3E-57 T 28-03-2018 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 SUPERFAMILY SSF46785 9 64 3.5E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 Gene3D G3DSA:3.40.50.1360 68 246 1.1E-31 T 28-03-2018 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 Pfam PF00455 DeoR C terminal sensor domain 78 235 3.1E-41 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 SUPERFAMILY SSF100950 77 235 1.17E-21 T 28-03-2018 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 SMART SM00420 11 63 1.1E-15 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 Pfam PF08220 DeoR-like helix-turn-helix domain 11 63 2.2E-15 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 Gene3D G3DSA:1.10.10.10 6 63 8.5E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 29 43 3.6E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16685 492526c9cd2f5b8717f5fd6b71fd85b0 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 43 61 3.6E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS04860 a17cc60a209422fd7ce1e155ac3cb160 294 Gene3D G3DSA:1.10.10.60 244 292 2.3E-5 T 28-03-2018 AM348_RS04860 a17cc60a209422fd7ce1e155ac3cb160 294 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 7 292 1.5E-62 T 28-03-2018 IPR010106 Recombination-promoting nuclease RpnA AM348_RS04860 a17cc60a209422fd7ce1e155ac3cb160 294 Pfam PF04754 Putative transposase, YhgA-like 6 206 6.4E-84 T 28-03-2018 IPR006842 Transposase (putative), YhgA-like AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 PIRSF PIRSF000676 1 308 1.4E-85 T 28-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 SUPERFAMILY SSF54211 1 160 4.33E-32 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 Hamap MF_00384 Homoserine kinase [thrB]. 2 307 31.066 T 28-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 28-03-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 SUPERFAMILY SSF55060 172 289 1.09E-32 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 308 2.5E-120 T 28-03-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 Gene3D G3DSA:3.30.230.10 1 165 3.4E-27 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 1.3E-13 T 28-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 PRINTS PR00958 Homoserine kinase signature 175 192 2.9E-34 T 28-03-2018 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 PRINTS PR00958 Homoserine kinase signature 9 24 2.9E-34 T 28-03-2018 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 PRINTS PR00958 Homoserine kinase signature 254 269 2.9E-34 T 28-03-2018 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 PRINTS PR00958 Homoserine kinase signature 97 112 2.9E-34 T 28-03-2018 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 PRINTS PR00958 Homoserine kinase signature 137 150 2.9E-34 T 28-03-2018 AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 Gene3D G3DSA:3.30.70.890 168 309 1.3E-28 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS01670 ba4a7331d24fdb38d846779fbf2d6365 309 Pfam PF08544 GHMP kinases C terminal 221 281 3.1E-9 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS19725 f017d705e18a38d938edab8563349fa1 274 SMART SM01266 94 148 9.6E-7 T 28-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM348_RS19725 f017d705e18a38d938edab8563349fa1 274 Gene3D G3DSA:2.160.10.10 93 274 1.8E-44 T 28-03-2018 AM348_RS19725 f017d705e18a38d938edab8563349fa1 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 228 256 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS19725 f017d705e18a38d938edab8563349fa1 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 219 254 9.3E-11 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS19725 f017d705e18a38d938edab8563349fa1 274 SUPERFAMILY SSF51161 110 272 1.39E-45 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS19725 f017d705e18a38d938edab8563349fa1 274 Pfam PF12464 Maltose acetyltransferase 98 147 7.1E-9 T 28-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM348_RS08200 4b82f6c7d23c55f070adca3f3f5e1922 211 Pfam PF13460 NAD(P)H-binding 8 190 9.0E-12 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS08200 4b82f6c7d23c55f070adca3f3f5e1922 211 SMART SM00859 3 103 0.0052 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS08200 4b82f6c7d23c55f070adca3f3f5e1922 211 SUPERFAMILY SSF51735 2 197 2.94E-42 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS08200 4b82f6c7d23c55f070adca3f3f5e1922 211 Gene3D G3DSA:3.40.50.720 2 210 4.5E-23 T 28-03-2018 AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 447 2.5E-57 T 28-03-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 502 187.078 T 28-03-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 Gene3D G3DSA:3.40.50.880 252 497 9.4E-33 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 Pfam PF13500 AAA domain 3 227 3.7E-21 T 28-03-2018 AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 5 494 2.5E-160 T 28-03-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 SUPERFAMILY SSF52540 1 228 3.32E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 Gene3D G3DSA:3.40.50.300 1 240 1.1E-48 T 28-03-2018 AM348_RS14160 b01957beda92dc1e7114e32faef747ae 506 SUPERFAMILY SSF52317 254 456 1.78E-38 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 SMART SM01091 492 573 3.0E-15 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 Pfam PF00999 Sodium/hydrogen exchanger family 15 388 9.2E-59 T 28-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 Gene3D G3DSA:3.30.70.1450 415 487 1.7E-12 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 Gene3D G3DSA:3.30.465.10 492 573 7.0E-8 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 SUPERFAMILY SSF56176 497 571 1.72E-9 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 SUPERFAMILY SSF116726 413 483 1.02E-10 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 Pfam PF02080 TrkA-C domain 421 483 1.3E-11 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 Pfam PF03471 Transporter associated domain 493 571 8.1E-10 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS15545 591a3e37c964c59bcd4ce195449e3b6e 577 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 576 49.54 T 28-03-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 AM348_RS17165 849e0ae01a5fc37e3602c4aadfe9fc33 993 Gene3D G3DSA:3.30.420.40 247 569 1.3E-4 T 28-03-2018 AM348_RS17165 849e0ae01a5fc37e3602c4aadfe9fc33 993 Pfam PF07520 Virulence factor SrfB 1 990 0.0 T 28-03-2018 IPR009216 Virulence factor SrfB AM348_RS17165 849e0ae01a5fc37e3602c4aadfe9fc33 993 PIRSF PIRSF034585 1 993 0.0 T 28-03-2018 IPR009216 Virulence factor SrfB AM348_RS17165 849e0ae01a5fc37e3602c4aadfe9fc33 993 Gene3D G3DSA:3.30.420.40 570 790 2.4E-5 T 28-03-2018 AM348_RS17165 849e0ae01a5fc37e3602c4aadfe9fc33 993 SUPERFAMILY SSF53067 700 825 2.99E-5 T 28-03-2018 AM348_RS17165 849e0ae01a5fc37e3602c4aadfe9fc33 993 SUPERFAMILY SSF53067 560 620 2.99E-5 T 28-03-2018 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 Gene3D G3DSA:3.40.50.10380 5 160 3.3E-36 T 28-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 SUPERFAMILY SSF53223 10 161 4.75E-54 T 28-03-2018 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 SUPERFAMILY SSF51735 163 453 2.63E-86 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 9.4E-29 T 28-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 Gene3D G3DSA:3.40.50.720 161 446 3.8E-84 T 28-03-2018 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 SMART SM00919 163 401 5.6E-142 T 28-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 SUPERFAMILY SSF53659 430 754 8.22E-94 T 28-03-2018 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 360 1.7E-20 T 28-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 SMART SM01274 18 151 2.3E-82 T 28-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 2.9E-100 T 28-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 PIRSF PIRSF036684 1 758 0.0 T 28-03-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 Gene3D G3DSA:3.40.718.10 447 716 4.1E-53 T 28-03-2018 AM348_RS11825 ee4c36e1186b427b2005c57e76fdea3c 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 28-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Pfam PF11987 Translation-initiation factor 2 680 785 1.2E-36 T 28-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 SUPERFAMILY SSF50447 797 893 3.34E-34 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Gene3D G3DSA:3.40.50.300 391 568 1.9E-39 T 28-03-2018 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Pfam PF00009 Elongation factor Tu GTP binding domain 400 556 2.5E-35 T 28-03-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 SUPERFAMILY SSF50447 569 650 1.91E-22 T 28-03-2018 IPR009000 Translation protein, beta-barrel domain AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Gene3D G3DSA:2.40.30.10 796 894 2.3E-31 T 28-03-2018 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 ProSitePatterns PS01176 Initiation factor 2 signature. 846 868 - T 28-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 SUPERFAMILY SSF46955 3 50 1.35E-12 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS08125 65df497a4422ee610762a54a14827d60 896 SUPERFAMILY SSF52540 395 563 6.14E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08125 65df497a4422ee610762a54a14827d60 896 SUPERFAMILY SSF52156 673 802 8.11E-38 T 28-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 893 17.649 T 28-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 399 554 1.1E-33 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Gene3D G3DSA:3.40.50.10050 698 774 3.2E-25 T 28-03-2018 IPR023115 Translation initiation factor IF- 2, domain 3 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Gene3D G3DSA:3.30.56.50 322 363 1.6E-9 T 28-03-2018 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Gene3D G3DSA:3.30.56.50 4 45 5.4E-11 T 28-03-2018 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 312 895 2.7E-297 T 28-03-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Gene3D G3DSA:2.40.30.10 569 697 1.7E-29 T 28-03-2018 AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 95 8.4E-15 T 28-03-2018 IPR013575 Initiation factor 2 associated domain, bacterial AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 320 370 1.1E-14 T 28-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal AM348_RS08125 65df497a4422ee610762a54a14827d60 896 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 1.1E-8 T 28-03-2018 IPR006847 Translation initiation factor IF-2, N-terminal AM348_RS20205 dc03d5b1c7d742f847efd0d670e7c0be 413 SUPERFAMILY SSF53254 25 410 4.37E-78 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS20205 dc03d5b1c7d742f847efd0d670e7c0be 413 ProSitePatterns PS00778 Histidine acid phosphatases active site signature. 305 321 - T 28-03-2018 IPR033379 Histidine acid phosphatase active site AM348_RS20205 dc03d5b1c7d742f847efd0d670e7c0be 413 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 31 45 - T 28-03-2018 IPR033379 Histidine acid phosphatase active site AM348_RS20205 dc03d5b1c7d742f847efd0d670e7c0be 413 Gene3D G3DSA:3.40.50.1240 53 85 0.24 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS20205 dc03d5b1c7d742f847efd0d670e7c0be 413 Gene3D G3DSA:3.40.50.1240 137 272 1.4E-48 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS20205 dc03d5b1c7d742f847efd0d670e7c0be 413 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 31 363 2.3E-18 T 28-03-2018 IPR000560 Histidine phosphatase superfamily, clade-2 GO:0003993 AM348_RS13035 d654998b28a1ec4dead88993177e45c9 604 Gene3D G3DSA:3.40.190.10 204 311 3.5E-19 T 28-03-2018 AM348_RS13035 d654998b28a1ec4dead88993177e45c9 604 Gene3D G3DSA:3.10.105.10 312 560 1.1E-45 T 28-03-2018 AM348_RS13035 d654998b28a1ec4dead88993177e45c9 604 Gene3D G3DSA:3.90.76.10 63 203 2.2E-23 T 28-03-2018 AM348_RS13035 d654998b28a1ec4dead88993177e45c9 604 PIRSF PIRSF002741 3 592 6.9E-170 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS13035 d654998b28a1ec4dead88993177e45c9 604 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 98 502 1.6E-66 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS13035 d654998b28a1ec4dead88993177e45c9 604 SUPERFAMILY SSF53850 49 590 3.08E-108 T 28-03-2018 AM348_RS08005 7f7cdcdf7061f78ef6af609029673474 94 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 81 1.0E-34 T 28-03-2018 AM348_RS08005 7f7cdcdf7061f78ef6af609029673474 94 Gene3D G3DSA:1.10.260.40 1 73 1.0E-11 T 28-03-2018 AM348_RS08005 7f7cdcdf7061f78ef6af609029673474 94 SUPERFAMILY SSF47413 3 71 1.24E-28 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 2.3E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 2.3E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 Gene3D G3DSA:1.10.10.60 243 289 4.2E-14 T 28-03-2018 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 Gene3D G3DSA:1.10.10.60 147 242 1.5E-14 T 28-03-2018 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 Pfam PF12833 Helix-turn-helix domain 209 287 2.9E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 SMART SM00342 203 286 2.2E-31 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 SUPERFAMILY SSF46689 239 287 2.06E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS17065 27c920252444d2cbeac7f7e12d5abff6 289 SUPERFAMILY SSF46689 188 237 2.46E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS00390 f428dd77b98607564ac8dca501a2d640 195 Pfam PF16449 Fimbrillin MatB 24 190 4.5E-65 T 28-03-2018 IPR016514 Fimbrial protein MatB AM348_RS03930 16f7f4fde7f9792fe6b37445e91d4b10 211 Pfam PF02581 Thiamine monophosphate synthase 20 189 5.0E-55 T 28-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS03930 16f7f4fde7f9792fe6b37445e91d4b10 211 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 20 202 1.3E-57 T 28-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS03930 16f7f4fde7f9792fe6b37445e91d4b10 211 SUPERFAMILY SSF51391 6 205 2.49E-63 T 28-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS03930 16f7f4fde7f9792fe6b37445e91d4b10 211 Gene3D G3DSA:3.20.20.70 13 205 1.8E-41 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS03930 16f7f4fde7f9792fe6b37445e91d4b10 211 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 10 207 19.805 T 28-03-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS03950 5c55b9df03f9d6eb98996a9ae3a6afd0 377 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 3 368 8.7E-162 T 28-03-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 AM348_RS03950 5c55b9df03f9d6eb98996a9ae3a6afd0 377 SUPERFAMILY SSF102114 36 363 5.23E-55 T 28-03-2018 AM348_RS03950 5c55b9df03f9d6eb98996a9ae3a6afd0 377 Gene3D G3DSA:3.20.20.70 17 370 1.6E-48 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS03950 5c55b9df03f9d6eb98996a9ae3a6afd0 377 Pfam PF04055 Radical SAM superfamily 82 220 2.4E-9 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS03950 5c55b9df03f9d6eb98996a9ae3a6afd0 377 SMART SM00876 258 361 5.0E-28 T 28-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS03950 5c55b9df03f9d6eb98996a9ae3a6afd0 377 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 258 360 2.6E-21 T 28-03-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 SUPERFAMILY SSF46689 264 313 9.41E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 Gene3D G3DSA:1.10.10.60 208 263 7.6E-14 T 28-03-2018 AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 Pfam PF12833 Helix-turn-helix domain 233 311 1.8E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 SMART SM00342 227 310 6.8E-22 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 SUPERFAMILY SSF52317 3 192 6.88E-44 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 Pfam PF01965 DJ-1/PfpI family 6 171 2.5E-12 T 28-03-2018 IPR002818 DJ-1/PfpI AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 Gene3D G3DSA:3.40.50.880 1 207 2.4E-52 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 SUPERFAMILY SSF46689 210 260 4.03E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS00075 4aa287814e78385b6d69538d5a3c0a24 316 Gene3D G3DSA:1.10.10.60 264 314 4.3E-12 T 28-03-2018 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 SMART SM00893 7 179 2.4E-14 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 Gene3D G3DSA:3.40.50.620 2 177 1.2E-22 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 Pfam PF01012 Electron transfer flavoprotein domain 22 166 7.5E-18 T 28-03-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 188 270 1.6E-27 T 28-03-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 28-03-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 SUPERFAMILY SSF52467 188 309 1.78E-41 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 PIRSF PIRSF000089 10 311 8.4E-79 T 28-03-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 SUPERFAMILY SSF52402 10 180 4.26E-26 T 28-03-2018 AM348_RS18755 f54cb48cf464bb5f3aa9f79d8b699535 311 Gene3D G3DSA:3.40.50.1220 184 311 1.7E-45 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 28-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 266 1.7E-38 T 28-03-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 SUPERFAMILY SSF48179 162 267 5.95E-37 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 3 266 26.961 T 28-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 Gene3D G3DSA:1.10.3730.10 160 269 2.6E-43 T 28-03-2018 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 SUPERFAMILY SSF51735 3 159 2.53E-37 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 PIRSF PIRSF000193 2 269 1.3E-98 T 28-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 99 4.3E-24 T 28-03-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 5 266 1.2E-91 T 28-03-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 AM348_RS23510 5b4903d25bf6a30181904db42c1882ec 269 Gene3D G3DSA:3.40.50.720 1 159 2.3E-33 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Gene3D G3DSA:3.30.70.1430 568 672 4.8E-25 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82714 723 809 5.23E-24 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Gene3D G3DSA:3.30.70.1440 673 769 5.0E-21 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82693 39 132 1.44E-26 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82866 296 497 3.53E-46 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Gene3D G3DSA:3.30.70.1430 38 141 2.9E-28 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Gene3D G3DSA:1.20.1640.10 820 1030 2.5E-37 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Gene3D G3DSA:1.20.1640.10 274 500 1.7E-41 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82866 807 1030 3.14E-44 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.6E-109 T 28-03-2018 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82714 182 272 6.54E-21 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1034 0.0 T 28-03-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82693 566 672 2.46E-29 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82693 138 182 2.88E-23 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 SUPERFAMILY SSF82693 274 330 2.88E-23 T 28-03-2018 AM348_RS11790 47555f853bfb637406e8da82e9306c3a 1037 Gene3D G3DSA:3.30.2090.10 180 273 1.8E-18 T 28-03-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 Gene3D G3DSA:1.10.455.10 6 156 1.0E-61 T 28-03-2018 IPR023798 Ribosomal protein S7 domain AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 PIRSF PIRSF002122 3 156 1.1E-63 T 28-03-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 28-03-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.9E-71 T 28-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 SUPERFAMILY SSF47973 6 149 1.83E-60 T 28-03-2018 IPR023798 Ribosomal protein S7 domain AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.283 T 28-03-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 AM348_RS07300 efbf94d8c05d94a6a1029af3eca7f308 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.9E-65 T 28-03-2018 IPR023798 Ribosomal protein S7 domain AM348_RS11025 443573f308c03201799aa2b70182563d 98 Hamap MF_00460 Protein RnfH [rnfH]. 7 97 26.122 T 28-03-2018 IPR005346 RnfH protein AM348_RS11025 443573f308c03201799aa2b70182563d 98 Pfam PF03658 RnfH family Ubiquitin 7 89 5.1E-35 T 28-03-2018 IPR005346 RnfH protein AM348_RS11025 443573f308c03201799aa2b70182563d 98 Gene3D G3DSA:3.10.20.280 1 90 2.1E-34 T 28-03-2018 IPR005346 RnfH protein AM348_RS11025 443573f308c03201799aa2b70182563d 98 SUPERFAMILY SSF54285 7 81 8.28E-27 T 28-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.7E-28 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 Pfam PF00072 Response regulator receiver domain 5 117 9.1E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 SUPERFAMILY SSF52172 3 184 4.23E-43 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 SMART SM00862 150 225 6.8E-28 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 SMART SM00448 3 116 5.3E-45 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 Gene3D G3DSA:3.40.50.2300 2 125 9.0E-37 T 28-03-2018 AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 7.3E-116 T 28-03-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 AM348_RS23435 7ed204e7f78f05fd1b851fc6d94cd039 229 Gene3D G3DSA:1.10.10.10 126 228 1.9E-36 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07220 6d3f3ffa35e57ca0d44e85aedf151747 239 SUPERFAMILY SSF46785 164 234 5.17E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07220 6d3f3ffa35e57ca0d44e85aedf151747 239 Pfam PF00293 NUDIX domain 25 147 8.4E-13 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS07220 6d3f3ffa35e57ca0d44e85aedf151747 239 Gene3D G3DSA:1.10.10.10 159 226 3.9E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07220 6d3f3ffa35e57ca0d44e85aedf151747 239 Gene3D G3DSA:3.90.79.10 21 158 1.2E-34 T 28-03-2018 AM348_RS07220 6d3f3ffa35e57ca0d44e85aedf151747 239 SUPERFAMILY SSF55811 16 157 2.03E-31 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS03685 d8f2196bfd4f5fc51d4b50a8997b420a 491 Gene3D G3DSA:3.40.50.2300 10 142 3.0E-4 T 28-03-2018 AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 Gene3D G3DSA:2.40.50.140 33 124 2.8E-31 T 28-03-2018 AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1048 1084 1.2E-18 T 28-03-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 SMART SM00316 37 119 7.0E-12 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 1.4E-171 T 28-03-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 SUPERFAMILY SSF50249 40 124 1.51E-20 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 Hamap MF_00970 Ribonuclease E [rne]. 1 1073 39.126 T 28-03-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 Pfam PF10150 Ribonuclease E/G family 121 391 1.4E-93 T 28-03-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AM348_RS19865 509bd88a9ecf36c2f5256d2fbf89d51b 1087 Pfam PF00575 S1 RNA binding domain 36 118 3.7E-16 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS11930 befd83d85b378a07f002bc9b0b73af65 141 Gene3D G3DSA:3.40.630.30 1 141 2.2E-34 T 28-03-2018 AM348_RS11930 befd83d85b378a07f002bc9b0b73af65 141 SUPERFAMILY SSF55729 1 128 2.78E-30 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS11930 befd83d85b378a07f002bc9b0b73af65 141 PIRSF PIRSF037663 1 132 3.7E-11 T 28-03-2018 IPR017255 Acetyltransferase, GNAT, predicted AM348_RS11930 befd83d85b378a07f002bc9b0b73af65 141 Pfam PF00583 Acetyltransferase (GNAT) family 18 123 2.5E-19 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS11930 befd83d85b378a07f002bc9b0b73af65 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 47.079 T 28-03-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 493 4.5E-297 T 28-03-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 Gene3D G3DSA:3.30.70.20 237 365 2.7E-31 T 28-03-2018 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 Gene3D G3DSA:3.30.70.20 366 467 1.2E-30 T 28-03-2018 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 Gene3D G3DSA:3.30.70.20 198 236 9.4E-20 T 28-03-2018 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 SUPERFAMILY SSF54862 1 502 1.57E-182 T 28-03-2018 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 Pfam PF13247 4Fe-4S dicluster domain 175 271 4.7E-37 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 436 5.7E-30 T 28-03-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 AM348_RS17330 c05a954d84ed3d5d72d595b744a64862 514 Gene3D G3DSA:3.30.70.20 5 197 2.6E-28 T 28-03-2018 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 PIRSF PIRSF036687 1 859 0.0 T 28-03-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Gene3D G3DSA:3.30.499.10 402 520 1.2E-10 T 28-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 28-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 4.7E-99 T 28-03-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 2.0E-67 T 28-03-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 28-03-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 SUPERFAMILY SSF53732 380 859 2.35E-149 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 SUPERFAMILY SSF52016 163 371 1.12E-72 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 SUPERFAMILY SSF74778 2 160 5.75E-69 T 28-03-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Gene3D G3DSA:3.40.1060.10 521 682 2.4E-26 T 28-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 3.6E-39 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 28-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Gene3D G3DSA:3.30.499.10 683 865 7.0E-54 T 28-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01055 973759b5819ca1c30b1101cd88242746 865 Gene3D G3DSA:3.20.19.10 162 363 2.4E-34 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS03960 c4205fa1fed0dd74eae07d3487669f39 101 SUPERFAMILY SSF52794 1 100 1.88E-35 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS03960 c4205fa1fed0dd74eae07d3487669f39 101 Gene3D G3DSA:3.40.50.2300 2 101 3.3E-38 T 28-03-2018 AM348_RS03960 c4205fa1fed0dd74eae07d3487669f39 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 95 8.1E-25 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS20990 7ad5a9ba7550801ae03a6517ffd356d0 271 ProSitePatterns PS01229 Hypothetical cof family signature 2. 213 235 - T 28-03-2018 AM348_RS20990 7ad5a9ba7550801ae03a6517ffd356d0 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 7.3E-56 T 28-03-2018 IPR023214 HAD-like domain AM348_RS20990 7ad5a9ba7550801ae03a6517ffd356d0 271 Gene3D G3DSA:3.40.50.1000 1 268 5.2E-35 T 28-03-2018 IPR023214 HAD-like domain AM348_RS20990 7ad5a9ba7550801ae03a6517ffd356d0 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 232 9.4E-23 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS20990 7ad5a9ba7550801ae03a6517ffd356d0 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 1.1E-57 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS20990 7ad5a9ba7550801ae03a6517ffd356d0 271 SUPERFAMILY SSF56784 1 263 6.78E-65 T 28-03-2018 IPR023214 HAD-like domain AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 SMART SM00267 163 341 4.5E-36 T 28-03-2018 IPR000160 GGDEF domain AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 Pfam PF00990 Diguanylate cyclase, GGDEF domain 175 334 1.9E-36 T 28-03-2018 IPR000160 GGDEF domain AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 SUPERFAMILY SSF55781 19 167 1.53E-14 T 28-03-2018 IPR029016 GAF domain-like AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 SUPERFAMILY SSF55073 179 334 6.83E-36 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 Gene3D G3DSA:3.30.70.270 165 340 7.4E-43 T 28-03-2018 AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 SMART SM00065 18 164 9.6E-8 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 Pfam PF13185 GAF domain 17 155 2.1E-7 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 173 336 1.5E-34 T 28-03-2018 IPR000160 GGDEF domain AM348_RS19250 08e342310c49f7818c1b9fd9b25ed42a 341 Gene3D G3DSA:3.30.450.40 4 164 2.5E-19 T 28-03-2018 IPR029016 GAF domain-like AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 1.0E-83 T 28-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 504 4.0E-240 T 28-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 2.1E-39 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 2.1E-39 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 2.1E-39 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 2.1E-39 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 2.1E-39 T 28-03-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 1.0E-15 T 28-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 SUPERFAMILY SSF55681 162 502 3.56E-124 T 28-03-2018 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 Gene3D G3DSA:3.30.930.10 156 501 4.8E-105 T 28-03-2018 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.705 T 28-03-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 Gene3D G3DSA:2.40.50.140 15 154 1.0E-41 T 28-03-2018 AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 SUPERFAMILY SSF50249 14 155 8.81E-49 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS09525 59d6c48684d3e4d78357d3dcb92badb5 505 PIRSF PIRSF039101 2 505 8.4E-207 T 28-03-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 AM348_RS00860 9fa383c6993644bdf870952bf4c5609e 265 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS00860 9fa383c6993644bdf870952bf4c5609e 265 Pfam PF00005 ABC transporter 27 176 1.1E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS00860 9fa383c6993644bdf870952bf4c5609e 265 SMART SM00382 36 224 2.8E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS00860 9fa383c6993644bdf870952bf4c5609e 265 SUPERFAMILY SSF52540 13 239 1.66E-62 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS00860 9fa383c6993644bdf870952bf4c5609e 265 Gene3D G3DSA:3.40.50.300 1 245 3.4E-62 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 28-03-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 SUPERFAMILY SSF52833 1 101 7.04E-29 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Gene3D G3DSA:3.40.30.10 103 195 7.2E-8 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 503 2.1E-44 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Gene3D G3DSA:3.50.50.60 341 441 6.2E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PIRSF PIRSF000238 1 521 8.7E-263 T 28-03-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 478 496 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 1.0E-66 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 3.4E-38 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 468 490 3.4E-38 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 3.4E-38 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 3.4E-38 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 3.4E-38 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Pfam PF13192 Thioredoxin domain 126 194 2.1E-8 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Gene3D G3DSA:3.50.50.60 228 340 1.4E-13 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 SUPERFAMILY SSF51905 207 507 2.42E-49 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Gene3D G3DSA:3.50.50.60 442 519 5.3E-10 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Gene3D G3DSA:3.40.30.10 1 94 3.4E-28 T 28-03-2018 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 Gene3D G3DSA:3.50.50.60 196 227 1.4E-7 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 517 1.1E-240 T 28-03-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 AM348_RS22270 193cb102beb0005efc0daa07a69ee4b2 521 SUPERFAMILY SSF52833 106 197 1.12E-23 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS09675 fae0eebfaadde9dd7bfe60a1fb49e7e8 108 SUPERFAMILY SSF51182 9 100 3.15E-25 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS09675 fae0eebfaadde9dd7bfe60a1fb49e7e8 108 PIRSF PIRSF029883 1 108 2.1E-35 T 28-03-2018 IPR025499 Pectin degradation protein KdgF AM348_RS09675 fae0eebfaadde9dd7bfe60a1fb49e7e8 108 Pfam PF07883 Cupin domain 33 90 7.6E-15 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS09675 fae0eebfaadde9dd7bfe60a1fb49e7e8 108 Gene3D G3DSA:2.60.120.10 1 108 6.1E-24 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 SUPERFAMILY SSF50249 2 66 2.0E-13 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 SUPERFAMILY SSF53335 76 431 2.13E-90 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 Gene3D G3DSA:2.40.50.140 1 87 9.9E-27 T 28-03-2018 AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 432 64.672 T 28-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 113 431 3.3E-25 T 28-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 414 424 - T 28-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 363 393 - T 28-03-2018 IPR030390 RNA methyltransferase TrmA, active site AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 Gene3D G3DSA:3.40.50.150 88 431 2.3E-54 T 28-03-2018 AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 Pfam PF01938 TRAM domain 11 66 3.6E-11 T 28-03-2018 IPR002792 TRAM domain AM348_RS09990 b56831bef5b00e620bbb977e09691746 432 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 424 1.8E-155 T 28-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 129 3.6E-27 T 28-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 Gene3D G3DSA:3.40.50.10330 6 132 5.2E-26 T 28-03-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 2 293 6.4E-112 T 28-03-2018 IPR005218 Diacylglycerol/lipid kinase AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 6 299 44.26 T 28-03-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 7 298 1.8E-143 T 28-03-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 SUPERFAMILY SSF111331 8 296 1.98E-67 T 28-03-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain AM348_RS13455 6950c0f4bbada5fbcb5bec7a46fa2204 299 SMART SM00046 6 132 1.4E-27 T 28-03-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 Gene3D G3DSA:1.10.730.10 574 683 9.9E-11 T 28-03-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 Pfam PF05746 DALR anticodon binding domain 582 679 4.0E-8 T 28-03-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 2.7E-215 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 27.139 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 5.5E-37 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 5.5E-37 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 5.5E-37 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 5.5E-37 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 5.5E-37 T 28-03-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06190 b96a9531ae834ce6d926bd4b8140fbd4 689 SUPERFAMILY SSF109604 339 511 6.38E-17 T 28-03-2018 AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 Gene3D G3DSA:3.30.70.20 22 70 8.3E-7 T 28-03-2018 AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 SUPERFAMILY SSF54862 33 153 2.97E-29 T 28-03-2018 AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 Gene3D G3DSA:3.30.70.20 106 171 1.8E-7 T 28-03-2018 AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 2.5E-51 T 28-03-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 163 27.012 T 28-03-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 1.3E-11 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12615 85cb2706ea2e27637f478bcdf4c676d9 180 Gene3D G3DSA:3.30.70.20 71 105 9.7E-15 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 1.1E-49 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 70.19 T 28-03-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.8E-25 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 5.8E-25 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 5.8E-25 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 5.8E-25 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 5.8E-25 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 Gene3D G3DSA:3.30.390.30 339 463 7.3E-34 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 Gene3D G3DSA:3.50.50.60 3 166 3.1E-23 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 2.6E-59 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 PIRSF PIRSF000350 1 463 3.2E-70 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 SUPERFAMILY SSF55424 345 463 1.51E-30 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 SUPERFAMILY SSF51905 3 335 4.91E-55 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 Gene3D G3DSA:3.40.50.720 170 338 1.2E-28 T 28-03-2018 AM348_RS04105 b8331441c577a6d6fc6a4b34153002f8 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 4.4E-30 T 28-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 Gene3D G3DSA:2.40.50.100 185 252 4.4E-12 T 28-03-2018 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 Gene3D G3DSA:1.10.10.10 1 107 3.2E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 Gene3D G3DSA:2.40.50.100 108 184 1.2E-17 T 28-03-2018 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 Pfam PF03459 TOBE domain 199 257 9.3E-11 T 28-03-2018 IPR005116 Transport-associated OB, type 1 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 Pfam PF03459 TOBE domain 125 187 9.1E-13 T 28-03-2018 IPR005116 Transport-associated OB, type 1 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 PIRSF PIRSF005763 1 262 5.2E-99 T 28-03-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 4.1E-14 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 SUPERFAMILY SSF50331 200 259 7.23E-14 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 123 192 8.0E-28 T 28-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 SUPERFAMILY SSF46785 2 106 1.09E-26 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 SUPERFAMILY SSF50331 123 192 2.09E-17 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS21450 ce280d3d44d5318d640a13c31890822e 262 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 113 4.7E-41 T 28-03-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal AM348_RS00870 8f029c63df2f98d445bd4d471929ef11 337 Pfam PF00419 Fimbrial protein 194 336 1.3E-12 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00870 8f029c63df2f98d445bd4d471929ef11 337 Gene3D G3DSA:2.60.40.1090 28 172 0.0023 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00870 8f029c63df2f98d445bd4d471929ef11 337 SUPERFAMILY SSF49401 195 336 5.97E-22 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00870 8f029c63df2f98d445bd4d471929ef11 337 Gene3D G3DSA:2.60.40.1090 191 337 9.0E-27 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 SUPERFAMILY SSF50156 219 345 2.19E-16 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 240 320 8.3E-15 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 536 667 1.7E-39 T 28-03-2018 IPR020992 Tail specific protease, C-terminal AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 SUPERFAMILY SSF52096 194 264 3.64E-68 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 SUPERFAMILY SSF52096 350 537 3.64E-68 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 Gene3D G3DSA:3.90.226.10 329 595 1.2E-58 T 28-03-2018 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 194 551 2.5E-129 T 28-03-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 SMART SM00245 326 531 1.6E-79 T 28-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 Gene3D G3DSA:2.30.42.10 246 328 1.1E-15 T 28-03-2018 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 SMART SM00228 246 323 7.4E-10 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 Gene3D G3DSA:3.30.750.44 155 245 1.4E-20 T 28-03-2018 AM348_RS15295 eb7230ddc154cc2ed7dc458db2794fb8 682 Pfam PF03572 Peptidase family S41 356 529 1.7E-52 T 28-03-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 AM348_RS05315 97d3af77db2866966046ad0a6c5723bb 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 2.8E-85 T 28-03-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 AM348_RS05315 97d3af77db2866966046ad0a6c5723bb 296 SUPERFAMILY SSF161098 35 286 1.07E-32 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS05315 97d3af77db2866966046ad0a6c5723bb 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 1.8E-30 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS05315 97d3af77db2866966046ad0a6c5723bb 296 Gene3D G3DSA:1.10.3720.10 15 287 7.1E-37 T 28-03-2018 AM348_RS14850 f31b09541a709ae86fa1577a299dd8d4 80 Pfam PF06183 DinI-like family 17 77 5.5E-21 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS14850 f31b09541a709ae86fa1577a299dd8d4 80 Gene3D G3DSA:3.30.910.10 1 77 4.1E-27 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS14850 f31b09541a709ae86fa1577a299dd8d4 80 SUPERFAMILY SSF54857 1 79 9.29E-26 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 SMART SM00382 161 304 4.4E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Pfam PF00158 Sigma-54 interaction domain 141 308 1.1E-72 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Gene3D G3DSA:1.10.8.60 314 390 5.9E-28 T 28-03-2018 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 SUPERFAMILY SSF46689 397 440 2.09E-9 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 SUPERFAMILY SSF52540 141 385 2.47E-74 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 SUPERFAMILY SSF52172 5 184 9.96E-48 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 441 6.3E-12 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 408 425 6.3E-12 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Gene3D G3DSA:3.40.50.2300 1 143 7.4E-41 T 28-03-2018 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Gene3D G3DSA:3.40.50.300 144 313 6.6E-31 T 28-03-2018 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Pfam PF00072 Response regulator receiver domain 8 117 7.8E-30 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Pfam PF02954 Bacterial regulatory protein, Fis family 403 440 7.1E-15 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 SMART SM00448 6 117 2.7E-38 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 Gene3D G3DSA:1.10.10.60 395 441 1.6E-16 T 28-03-2018 AM348_RS03875 0fe50c0d694df5e2544bdd798bed2538 441 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS19085 a18ef3505ba256ad60628c0c0fe5b560 137 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS19085 a18ef3505ba256ad60628c0c0fe5b560 137 SUPERFAMILY SSF55811 2 125 5.15E-34 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS19085 a18ef3505ba256ad60628c0c0fe5b560 137 Gene3D G3DSA:3.90.79.10 1 135 1.1E-31 T 28-03-2018 AM348_RS19085 a18ef3505ba256ad60628c0c0fe5b560 137 Pfam PF00293 NUDIX domain 3 125 6.6E-20 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS19085 a18ef3505ba256ad60628c0c0fe5b560 137 PRINTS PR00502 NUDIX hydrolase family signature 46 61 4.7E-7 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS19085 a18ef3505ba256ad60628c0c0fe5b560 137 PRINTS PR00502 NUDIX hydrolase family signature 32 46 4.7E-7 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 7.9E-34 T 28-03-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 Gene3D G3DSA:2.40.50.140 1 114 4.0E-48 T 28-03-2018 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 SMART SM01383 42 118 1.9E-48 T 28-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 PIRSF PIRSF002158 12 273 5.2E-100 T 28-03-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 272 1.3E-131 T 28-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 SMART SM01382 124 251 5.1E-89 T 28-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 SUPERFAMILY SSF50249 3 125 5.48E-50 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.056 T 28-03-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 2.4E-55 T 28-03-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 Gene3D G3DSA:2.30.30.30 119 195 2.5E-31 T 28-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 28-03-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 Gene3D G3DSA:4.10.950.10 197 272 3.3E-35 T 28-03-2018 IPR014726 Ribosomal protein L2, domain 3 AM348_RS07355 1222dfa2ea921910843a6bba597e2009 273 SUPERFAMILY SSF50104 127 269 1.87E-59 T 28-03-2018 IPR008991 Translation protein SH3-like domain AM348_RS19200 a02f979eda14c33975bfb059052d0e93 427 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 42.42 T 28-03-2018 IPR006698 Uncharacterised protein family UPF0229 AM348_RS19200 a02f979eda14c33975bfb059052d0e93 427 Pfam PF04285 Protein of unknown function (DUF444) 4 421 1.1E-186 T 28-03-2018 IPR006698 Uncharacterised protein family UPF0229 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 SMART SM00434 11 499 0.0 T 28-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Gene3D G3DSA:2.120.10.90 533 856 6.3E-136 T 28-03-2018 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Gene3D G3DSA:3.90.199.10 34 285 2.5E-116 T 28-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 28-03-2018 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 SUPERFAMILY SSF56719 30 521 1.57E-183 T 28-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Gene3D G3DSA:3.90.199.10 286 374 3.5E-9 T 28-03-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.669 T 28-03-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 SUPERFAMILY SSF101904 533 850 1.1E-112 T 28-03-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Gene3D G3DSA:1.10.268.10 375 497 1.0E-50 T 28-03-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.6E-8 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 9.2E-10 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 737 4.9E-16 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 5.8E-13 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 744 789 4.6E-14 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 6.5E-11 T 28-03-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 AM348_RS12810 21b67303e788a319bb79311e33fbd05a 879 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 4.1E-154 T 28-03-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS08605 6d09f190373582d85f39f126f457cdfc 168 Pfam PF03167 Uracil DNA glycosylase superfamily 6 157 1.5E-22 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS08605 6d09f190373582d85f39f126f457cdfc 168 Gene3D G3DSA:3.40.470.10 1 167 1.7E-46 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS08605 6d09f190373582d85f39f126f457cdfc 168 Hamap MF_01956 G/U mismatch-specific DNA glycosylase [mug]. 1 168 47.523 T 28-03-2018 IPR023502 G/U mismatch-specific DNA glycosylase, bacterial GO:0006281|GO:0019104 AM348_RS08605 6d09f190373582d85f39f126f457cdfc 168 SUPERFAMILY SSF52141 2 161 8.5E-45 T 28-03-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 Gene3D G3DSA:3.40.640.10 1 234 1.9E-51 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 28-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 PIRSF PIRSF005572 2 384 9.2E-143 T 28-03-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 1.3E-234 T 28-03-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 SUPERFAMILY SSF53383 5 390 6.18E-115 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 55.552 T 28-03-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 Pfam PF00266 Aminotransferase class-V 5 368 1.5E-87 T 28-03-2018 IPR000192 Aminotransferase class V domain AM348_RS11505 7e4a3674c68e1bfc39df306cd89b4fa6 404 Gene3D G3DSA:3.90.1150.10 235 404 5.1E-52 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18360 69494da8d77790da0453f614dc54679b 594 Pfam PF00990 Diguanylate cyclase, GGDEF domain 427 583 2.5E-45 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18360 69494da8d77790da0453f614dc54679b 594 SMART SM00267 416 588 4.4E-53 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18360 69494da8d77790da0453f614dc54679b 594 SMART SM00304 207 260 2.5E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS18360 69494da8d77790da0453f614dc54679b 594 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 426 586 3.6E-48 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18360 69494da8d77790da0453f614dc54679b 594 Gene3D G3DSA:3.30.70.270 425 592 1.6E-53 T 28-03-2018 AM348_RS18360 69494da8d77790da0453f614dc54679b 594 SUPERFAMILY SSF55781 272 421 9.81E-10 T 28-03-2018 IPR029016 GAF domain-like AM348_RS18360 69494da8d77790da0453f614dc54679b 594 Pfam PF00672 HAMP domain 207 254 9.7E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS18360 69494da8d77790da0453f614dc54679b 594 SUPERFAMILY SSF158472 207 254 9.55E-8 T 28-03-2018 AM348_RS18360 69494da8d77790da0453f614dc54679b 594 Gene3D G3DSA:3.30.450.40 257 424 5.5E-11 T 28-03-2018 IPR029016 GAF domain-like AM348_RS18360 69494da8d77790da0453f614dc54679b 594 SUPERFAMILY SSF55073 432 588 7.06E-45 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Pfam PF00270 DEAD/DEAH box helicase 48 212 5.4E-51 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 18 578 47.174 T 28-03-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Pfam PF00271 Helicase conserved C-terminal domain 249 357 1.2E-28 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Pfam PF03880 DbpA RNA binding domain 507 576 3.5E-20 T 28-03-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Gene3D G3DSA:3.40.50.300 18 236 1.2E-59 T 28-03-2018 AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 171 179 - T 28-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Pfam PF12343 Cold shock protein DEAD box A 586 659 1.8E-14 T 28-03-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 SUPERFAMILY SSF52540 164 371 3.97E-50 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 SMART SM00487 42 240 3.0E-64 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 SUPERFAMILY SSF52540 9 226 6.43E-73 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 Gene3D G3DSA:3.40.50.300 237 425 5.7E-42 T 28-03-2018 AM348_RS08155 39c35ee2db43be2ccf9ed0c46e531a29 659 SMART SM00490 276 357 1.1E-31 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 Gene3D G3DSA:1.10.10.10 163 203 0.017 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 SUPERFAMILY SSF110849 65 147 2.62E-6 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 Pfam PF02195 ParB-like nuclease domain 51 141 1.0E-5 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 413 676 1.8E-21 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 Gene3D G3DSA:3.40.50.300 390 562 1.1E-7 T 28-03-2018 AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 SUPERFAMILY SSF52540 391 527 1.59E-14 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 SUPERFAMILY SSF52540 585 678 1.59E-14 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 Gene3D G3DSA:3.90.1530.10 7 157 4.2E-14 T 28-03-2018 AM348_RS02240 faef4478ee43bbfc848e725d3265387b 726 Gene3D G3DSA:3.40.50.300 571 693 2.2E-7 T 28-03-2018 AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 213 226 - T 28-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 Gene3D G3DSA:1.10.10.60 3 28 0.0026 T 28-03-2018 AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 Gene3D G3DSA:3.40.640.10 38 248 5.1E-36 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 Pfam PF00155 Aminotransferase class I and II 26 353 6.6E-39 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 SUPERFAMILY SSF53383 6 357 1.2E-77 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 Gene3D G3DSA:3.90.1150.10 249 363 1.3E-19 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS22095 50de2a9507c0f749b87b6f8ec873b001 364 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 8 354 1.1E-102 T 28-03-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 PRINTS PR00173 Glutamate-aspartate symporter signature 290 316 5.6E-14 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 PRINTS PR00173 Glutamate-aspartate symporter signature 188 207 5.6E-14 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 PRINTS PR00173 Glutamate-aspartate symporter signature 12 32 5.6E-14 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 PRINTS PR00173 Glutamate-aspartate symporter signature 352 372 5.6E-14 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 PRINTS PR00173 Glutamate-aspartate symporter signature 325 344 5.6E-14 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 Gene3D G3DSA:1.10.3860.10 7 407 3.4E-74 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 6 407 36.092 T 28-03-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 Pfam PF00375 Sodium:dicarboxylate symporter family 18 397 5.8E-64 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08440 65caedc7381c90a7bf022dbf8c7b7443 414 SUPERFAMILY SSF118215 18 400 9.15E-96 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 SUPERFAMILY SSF51161 33 316 7.86E-86 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 1.1E-20 T 28-03-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.58 T 28-03-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Gene3D G3DSA:2.160.10.10 136 312 7.3E-46 T 28-03-2018 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Gene3D G3DSA:2.160.10.10 68 135 1.8E-12 T 28-03-2018 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 106 134 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 1.0E-7 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 2.9E-9 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 3.6E-7 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 259 285 0.23 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS00720 b44b7406144cd7e903591688c928b3f5 341 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 1.1E-129 T 28-03-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 Gene3D G3DSA:3.40.50.1100 50 146 1.5E-29 T 28-03-2018 AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 SUPERFAMILY SSF53686 7 326 1.44E-86 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 316 7.6E-54 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 PIRSF PIRSF006278 2 328 3.8E-94 T 28-03-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 Gene3D G3DSA:3.40.50.1100 147 328 2.0E-25 T 28-03-2018 AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 1 328 77.604 T 28-03-2018 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 AM348_RS14510 36ce97c8b1ad0a34a70dfc48626b77da 328 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 12 328 1.6E-142 T 28-03-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 PIRSF PIRSF000141 1 418 1.1E-168 T 28-03-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 SUPERFAMILY SSF51905 249 416 1.68E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 SUPERFAMILY SSF51905 93 102 1.68E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 SUPERFAMILY SSF51905 1 35 1.68E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 Gene3D G3DSA:3.50.50.60 2 419 1.0E-21 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 411 1.4E-173 T 28-03-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 415 48.208 T 28-03-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM348_RS12760 f41d8dc34e8484f43892a09825444148 419 Pfam PF00890 FAD binding domain 4 399 8.7E-62 T 28-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS16595 eec0a124e493962fe1b2d619734fc519 214 Pfam PF00805 Pentapeptide repeats (8 copies) 26 45 2.7E-4 T 28-03-2018 IPR001646 Pentapeptide repeat AM348_RS16595 eec0a124e493962fe1b2d619734fc519 214 Pfam PF00805 Pentapeptide repeats (8 copies) 53 78 6.2E-4 T 28-03-2018 IPR001646 Pentapeptide repeat AM348_RS16595 eec0a124e493962fe1b2d619734fc519 214 Gene3D G3DSA:2.160.20.80 1 214 1.2E-51 T 28-03-2018 AM348_RS16595 eec0a124e493962fe1b2d619734fc519 214 Pfam PF13599 Pentapeptide repeats (9 copies) 94 171 7.2E-16 T 28-03-2018 IPR001646 Pentapeptide repeat AM348_RS16595 eec0a124e493962fe1b2d619734fc519 214 SUPERFAMILY SSF141571 20 212 2.68E-41 T 28-03-2018 AM348_RS03755 fe969cca2b733f05892498f45b828eee 105 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 15 104 2.0E-14 T 28-03-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 AM348_RS03755 fe969cca2b733f05892498f45b828eee 105 SUPERFAMILY SSF50118 3 105 5.75E-18 T 28-03-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AM348_RS03755 fe969cca2b733f05892498f45b828eee 105 Gene3D G3DSA:2.30.30.110 3 104 1.1E-15 T 28-03-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor AM348_RS03755 fe969cca2b733f05892498f45b828eee 105 Pfam PF01845 CcdB protein 3 104 7.9E-22 T 28-03-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PIRSF PIRSF000350 1 468 4.5E-87 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 SUPERFAMILY SSF51905 2 338 9.88E-58 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 458 1.6E-150 T 28-03-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 3.5E-35 T 28-03-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 28-03-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 Gene3D G3DSA:3.40.50.720 162 339 1.3E-29 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 SUPERFAMILY SSF55424 343 466 1.01E-38 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 3.8E-41 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 3.8E-41 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 3.8E-41 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.8E-41 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 3.8E-41 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 Gene3D G3DSA:3.30.390.30 340 461 5.5E-38 T 28-03-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 6.5E-70 T 28-03-2018 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 Gene3D G3DSA:3.50.50.60 1 161 1.7E-26 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS01080 ae6e833e3b02690fd61be88a3372f12b 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 4.0E-62 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 TIGRFAM TIGR01321 TrpR: trp operon repressor 11 104 4.6E-42 T 28-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 Gene3D G3DSA:1.10.1270.10 8 108 1.7E-27 T 28-03-2018 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 Pfam PF01371 Trp repressor protein 17 103 5.9E-29 T 28-03-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 11 101 1.0E-37 T 28-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 PIRSF PIRSF003196 1 108 2.0E-41 T 28-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 Hamap MF_00475 Trp operon repressor [trpR]. 15 108 23.894 T 28-03-2018 IPR013335 Trp repressor, bacterial GO:0006355 AM348_RS01735 e59f25b487cdc1d0fc456dfd9995faff 108 SUPERFAMILY SSF48295 6 104 8.89E-30 T 28-03-2018 IPR010921 Trp repressor/replication initiator GO:0043565 AM348_RS08785 f19361a28c1f2f9a0edaf79884d47e5f 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 2.1E-160 T 28-03-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain AM348_RS08785 f19361a28c1f2f9a0edaf79884d47e5f 386 SUPERFAMILY SSF52440 174 279 8.06E-39 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS08785 f19361a28c1f2f9a0edaf79884d47e5f 386 SUPERFAMILY SSF56059 1 168 2.83E-93 T 28-03-2018 AM348_RS08785 f19361a28c1f2f9a0edaf79884d47e5f 386 SUPERFAMILY SSF56059 266 382 2.83E-93 T 28-03-2018 AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 SUPERFAMILY SSF53822 65 213 3.3E-10 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 SMART SM00354 4 74 3.3E-22 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 1.8E-16 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 Gene3D G3DSA:1.10.260.40 5 56 4.5E-19 T 28-03-2018 AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 Gene3D G3DSA:3.40.50.2300 57 189 2.9E-13 T 28-03-2018 AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 28-03-2018 AM348_RS19735 35d9c0e5abe3dbcfc7d4ce883f012705 293 SUPERFAMILY SSF47413 3 60 1.64E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS01225 46cf4df93c7b547d2901680e9e879457 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.3E-6 T 28-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01225 46cf4df93c7b547d2901680e9e879457 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 28-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01225 46cf4df93c7b547d2901680e9e879457 360 Pfam PF00953 Glycosyl transferase family 4 99 284 2.4E-34 T 28-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM348_RS01225 46cf4df93c7b547d2901680e9e879457 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 28-03-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01225 46cf4df93c7b547d2901680e9e879457 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.877 T 28-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01225 46cf4df93c7b547d2901680e9e879457 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 1.2E-161 T 28-03-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 SUPERFAMILY SSF69349 442 584 4.63E-39 T 28-03-2018 AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 Pfam PF05954 Phage late control gene D protein (GPD) 34 329 2.5E-75 T 28-03-2018 AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 503 1.4E-131 T 28-03-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 SUPERFAMILY SSF69279 193 364 1.6E-46 T 28-03-2018 AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 SUPERFAMILY SSF69255 363 451 1.28E-31 T 28-03-2018 AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 Gene3D G3DSA:2.40.50.230 369 452 2.4E-34 T 28-03-2018 IPR006531 Gp5 N-terminal AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 9 520 6.5E-182 T 28-03-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 Gene3D G3DSA:3.55.50.10 97 190 2.1E-25 T 28-03-2018 AM348_RS09080 18280f4c5dbb2013279baedbaab82c98 588 SUPERFAMILY SSF69279 8 186 3.16E-47 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 3.0E-42 T 28-03-2018 IPR013264 DNA primase, catalytic core, N-terminal AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Gene3D G3DSA:1.20.50.20 368 417 5.6E-21 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Gene3D G3DSA:3.90.580.10 1 102 3.0E-35 T 28-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Pfam PF01807 CHC2 zinc finger 7 100 3.4E-41 T 28-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Gene3D G3DSA:3.90.980.10 109 240 4.8E-45 T 28-03-2018 IPR013264 DNA primase, catalytic core, N-terminal AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 SUPERFAMILY SSF57783 4 100 6.63E-36 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Pfam PF13155 Toprim-like 263 348 1.4E-14 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 PIRSF PIRSF002811 2 580 9.7E-146 T 28-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 SMART SM00766 450 575 4.0E-49 T 28-03-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 SUPERFAMILY SSF56731 115 428 6.15E-115 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 SUPERFAMILY SSF117023 447 579 7.98E-43 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Pfam PF10410 DnaB-helicase binding domain of primase 369 424 3.4E-12 T 28-03-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 3.4E-32 T 28-03-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Gene3D G3DSA:3.40.1360.10 241 367 4.9E-33 T 28-03-2018 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 SMART SM00400 36 90 1.2E-37 T 28-03-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Gene3D G3DSA:1.10.860.10 434 581 5.3E-38 T 28-03-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 2.9E-151 T 28-03-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 Hamap MF_00974 DNA primase [dnaG]. 4 576 30.338 T 28-03-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 AM348_RS08615 808bf7e9929aeabb00369ca803c2f8b8 581 SMART SM00493 259 330 6.5E-21 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 Hamap MF_00142 Protein CyaY [cyaY]. 1 105 29.219 T 28-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 Gene3D G3DSA:3.30.920.10 1 106 7.5E-35 T 28-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 Pfam PF01491 Frataxin-like domain 1 103 2.9E-30 T 28-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 SMART SM01219 1 106 6.1E-57 T 28-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 SUPERFAMILY SSF55387 1 105 3.14E-40 T 28-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 28-03-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS04925 8c4bc34321b86e32429650456a40290d 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 1.1E-43 T 28-03-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 AM348_RS14155 3b3d036d7cf74ba4c1ed59c9e6cd1eb8 271 SUPERFAMILY SSF52540 2 228 1.66E-55 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14155 3b3d036d7cf74ba4c1ed59c9e6cd1eb8 271 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS14155 3b3d036d7cf74ba4c1ed59c9e6cd1eb8 271 Pfam PF00005 ABC transporter 17 165 2.9E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS14155 3b3d036d7cf74ba4c1ed59c9e6cd1eb8 271 Gene3D G3DSA:3.40.50.300 1 238 4.1E-59 T 28-03-2018 AM348_RS14155 3b3d036d7cf74ba4c1ed59c9e6cd1eb8 271 TIGRFAM TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein 11 199 9.4E-88 T 28-03-2018 IPR005876 Cobalt transport protein ATP-binding subunit GO:0006824 AM348_RS14155 3b3d036d7cf74ba4c1ed59c9e6cd1eb8 271 SMART SM00382 26 213 1.0E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 SUPERFAMILY SSF57783 61 99 1.6E-12 T 28-03-2018 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Gene3D G3DSA:3.30.65.10 100 144 2.0E-13 T 28-03-2018 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Gene3D G3DSA:3.30.65.10 8 55 7.0E-18 T 28-03-2018 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Gene3D G3DSA:3.30.65.10 56 99 1.1E-15 T 28-03-2018 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Gene3D G3DSA:2.20.28.20 145 180 0.21 T 28-03-2018 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 13 49 1.1E-16 T 28-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 62 98 1.6E-16 T 28-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 145 167 0.12 T 28-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 105 142 1.2E-15 T 28-03-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 AM348_RS07525 7a8e1fb1e64b21ab14518f831bc748a1 180 SUPERFAMILY SSF57783 12 49 5.95E-14 T 28-03-2018 AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 Gene3D G3DSA:2.40.50.140 259 326 5.3E-7 T 28-03-2018 AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 SUPERFAMILY SSF50331 242 330 9.07E-8 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 Pfam PF00005 ABC transporter 21 162 3.8E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 Pfam PF08402 TOBE domain 257 332 6.3E-16 T 28-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 Gene3D G3DSA:3.40.50.300 1 244 9.1E-71 T 28-03-2018 AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 SMART SM00382 29 212 1.6E-17 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS17120 49f5fddf71c0c2daab8f96bfa0bda3a7 338 SUPERFAMILY SSF52540 5 243 2.86E-83 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10140 a52a6de8dbd73718b2c645cae5ae17c5 375 Gene3D G3DSA:3.10.350.10 107 240 1.9E-10 T 28-03-2018 AM348_RS10140 a52a6de8dbd73718b2c645cae5ae17c5 375 SMART SM00257 118 162 7.0E-10 T 28-03-2018 IPR018392 LysM domain AM348_RS10140 a52a6de8dbd73718b2c645cae5ae17c5 375 Pfam PF01476 LysM domain 119 161 7.5E-10 T 28-03-2018 IPR018392 LysM domain AM348_RS10140 a52a6de8dbd73718b2c645cae5ae17c5 375 SUPERFAMILY SSF51261 118 372 2.09E-51 T 28-03-2018 IPR011055 Duplicated hybrid motif AM348_RS10140 a52a6de8dbd73718b2c645cae5ae17c5 375 Pfam PF01551 Peptidase family M23 275 368 2.4E-31 T 28-03-2018 IPR016047 Peptidase M23 AM348_RS10140 a52a6de8dbd73718b2c645cae5ae17c5 375 Gene3D G3DSA:2.70.70.10 241 375 1.8E-37 T 28-03-2018 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 Gene3D G3DSA:2.40.50.140 2 70 2.1E-28 T 28-03-2018 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 28-03-2018 IPR019844 Cold-shock conserved site AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 PIRSF PIRSF002599 1 70 1.7E-26 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 SMART SM00357 6 70 2.5E-31 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 PRINTS PR00050 Cold shock protein signature 7 22 5.8E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 PRINTS PR00050 Cold shock protein signature 28 37 5.8E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 PRINTS PR00050 Cold shock protein signature 43 61 5.8E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 8.9E-33 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS06200 40785a8282413070fe126dfd41e458ff 70 SUPERFAMILY SSF50249 4 69 3.94E-26 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS11080 4ba4240032205eae711a02d931665557 255 SUPERFAMILY SSF75217 2 247 2.68E-102 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS11080 4ba4240032205eae711a02d931665557 255 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 255 119.573 T 28-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM348_RS11080 4ba4240032205eae711a02d931665557 255 PIRSF PIRSF000386 1 253 7.7E-103 T 28-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM348_RS11080 4ba4240032205eae711a02d931665557 255 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 1.1E-71 T 28-03-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM348_RS11080 4ba4240032205eae711a02d931665557 255 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 2 234 3.8E-111 T 28-03-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 AM348_RS11080 4ba4240032205eae711a02d931665557 255 Gene3D G3DSA:1.10.1270.20 170 254 4.8E-36 T 28-03-2018 AM348_RS11080 4ba4240032205eae711a02d931665557 255 Gene3D G3DSA:3.40.1280.10 1 169 1.0E-72 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 SUPERFAMILY SSF56925 22 196 1.96E-44 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01021 OMPA domain signature 225 247 8.2E-24 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01021 OMPA domain signature 272 288 8.2E-24 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01021 OMPA domain signature 257 272 8.2E-24 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 Gene3D G3DSA:2.40.160.20 9 208 1.5E-44 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 SUPERFAMILY SSF103088 213 336 1.31E-35 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 ProSitePatterns PS01068 OmpA-like domain. 259 303 - T 28-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 Gene3D G3DSA:3.30.1330.60 209 347 6.0E-39 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 Pfam PF01389 OmpA-like transmembrane domain 23 197 8.3E-74 T 28-03-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 Pfam PF00691 OmpA family 224 319 7.8E-24 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 281 300 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 167 181 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 213 228 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 242 261 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 315 328 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 109 125 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS20540 6104fe8ac246ffb8b41caec8fc11a431 348 PRINTS PR01022 Outer membrane protein A signature 181 195 1.1E-71 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS00945 29538124fa5953d863925402acae10f3 188 SUPERFAMILY SSF49401 27 188 1.39E-14 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00945 29538124fa5953d863925402acae10f3 188 Gene3D G3DSA:2.60.40.1090 26 188 1.6E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00945 29538124fa5953d863925402acae10f3 188 Pfam PF00419 Fimbrial protein 30 188 3.0E-9 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 SUPERFAMILY SSF54768 9 75 5.13E-24 T 28-03-2018 AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 28-03-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.3E-30 T 28-03-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 Gene3D G3DSA:3.30.160.20 10 72 4.2E-28 T 28-03-2018 AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 Gene3D G3DSA:3.30.230.10 76 166 3.3E-34 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 SUPERFAMILY SSF54211 79 159 3.54E-27 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.7E-29 T 28-03-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 2.5E-71 T 28-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM348_RS07425 c1e294e32b89091a85ed4c4c974c9362 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 35.037 T 28-03-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 6.1E-9 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 6.1E-9 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 6.1E-9 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 Pfam PF00106 short chain dehydrogenase 2 187 9.3E-55 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 SUPERFAMILY SSF51735 2 231 3.2E-63 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 Gene3D G3DSA:3.40.50.720 1 235 1.1E-59 T 28-03-2018 AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.1E-20 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 3.1E-20 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 3.1E-20 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 3.1E-20 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17800 945ae9be0a21973c408d5127d1241b4c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 3.1E-20 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS13515 69da411872b2804d14b573ece026cd46 476 Pfam PF13460 NAD(P)H-binding 9 150 6.9E-17 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13515 69da411872b2804d14b573ece026cd46 476 Gene3D G3DSA:3.30.530.20 325 476 1.7E-6 T 28-03-2018 IPR023393 START-like domain AM348_RS13515 69da411872b2804d14b573ece026cd46 476 SUPERFAMILY SSF51735 3 294 1.57E-47 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13515 69da411872b2804d14b573ece026cd46 476 Pfam PF11066 Protein of unknown function (DUF2867) 330 463 4.5E-14 T 28-03-2018 IPR021295 Protein of unknown function DUF2867 AM348_RS13515 69da411872b2804d14b573ece026cd46 476 Gene3D G3DSA:3.40.50.720 2 302 1.3E-27 T 28-03-2018 AM348_RS13515 69da411872b2804d14b573ece026cd46 476 SUPERFAMILY SSF55961 331 472 1.47E-5 T 28-03-2018 AM348_RS12130 d322609924844ddbc70866f7e939e147 400 Pfam PF07670 Nucleoside recognition 92 189 1.7E-7 T 28-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM348_RS12130 d322609924844ddbc70866f7e939e147 400 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 398 3.7E-59 T 28-03-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 AM348_RS12130 d322609924844ddbc70866f7e939e147 400 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 398 4.6E-146 T 28-03-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 AM348_RS12130 d322609924844ddbc70866f7e939e147 400 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 6.3E-21 T 28-03-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 AM348_RS18985 582e5f0e48dbb5e555aa2d2215310b36 295 SUPERFAMILY SSF82771 34 111 2.22E-10 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS18985 582e5f0e48dbb5e555aa2d2215310b36 295 Gene3D G3DSA:3.40.1440.10 20 115 1.4E-17 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS18985 582e5f0e48dbb5e555aa2d2215310b36 295 SMART SM00465 34 112 3.6E-15 T 28-03-2018 IPR000305 GIY-YIG nuclease superfamily AM348_RS17230 0fa439b1c2479568bd365cca719ef888 332 Gene3D G3DSA:3.20.20.30 3 325 2.0E-56 T 28-03-2018 AM348_RS17230 0fa439b1c2479568bd365cca719ef888 332 Pfam PF00296 Luciferase-like monooxygenase 17 295 5.7E-30 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS17230 0fa439b1c2479568bd365cca719ef888 332 SUPERFAMILY SSF51679 4 324 5.5E-58 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS17230 0fa439b1c2479568bd365cca719ef888 332 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 5 325 3.9E-101 T 28-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 18 103 1.4E-19 T 28-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 TIGRFAM TIGR01334 modD: modD protein 2 278 6.0E-132 T 28-03-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 Gene3D G3DSA:3.20.20.70 134 267 4.5E-23 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 SUPERFAMILY SSF54675 3 105 3.85E-21 T 28-03-2018 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 112 276 1.7E-30 T 28-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 SUPERFAMILY SSF51690 122 276 3.61E-36 T 28-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 Gene3D G3DSA:3.90.1170.20 4 133 9.2E-20 T 28-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AM348_RS15580 c79107e2ff7711da64b05d583e5ab27b 285 PIRSF PIRSF006250 1 280 5.0E-68 T 28-03-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AM348_RS10045 253777ef8a74767839746ecce0866f4c 229 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 30 228 1.8E-71 T 28-03-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 AM348_RS10045 253777ef8a74767839746ecce0866f4c 229 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 6 228 41.488 T 28-03-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 AM348_RS10045 253777ef8a74767839746ecce0866f4c 229 Gene3D G3DSA:3.20.20.70 1 227 1.0E-39 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS10045 253777ef8a74767839746ecce0866f4c 229 SUPERFAMILY SSF51366 6 225 5.65E-62 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS23320 adb098e5f78ef37497ed83f1481bed05 156 SUPERFAMILY SSF52121 4 154 1.83E-59 T 28-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS23320 adb098e5f78ef37497ed83f1481bed05 156 Gene3D G3DSA:3.40.50.960 1 155 2.2E-65 T 28-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS23320 adb098e5f78ef37497ed83f1481bed05 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 4.3E-56 T 28-03-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS23320 adb098e5f78ef37497ed83f1481bed05 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.826 T 28-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS23320 adb098e5f78ef37497ed83f1481bed05 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 2.1E-60 T 28-03-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 SMART SM00528 87 135 2.4E-25 T 28-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 Pfam PF00816 H-NS histone family 32 127 2.8E-20 T 28-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 SUPERFAMILY SSF81273 2 58 6.28E-18 T 28-03-2018 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 PIRSF PIRSF002096 1 135 6.8E-57 T 28-03-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 SUPERFAMILY SSF81273 93 136 2.43E-12 T 28-03-2018 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 Gene3D G3DSA:4.10.430.10 93 135 2.0E-19 T 28-03-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 AM348_RS15935 ccb2cc84aa3bef6a70bd63f03cb1f8a6 137 Gene3D G3DSA:1.10.287.1050 1 57 1.6E-25 T 28-03-2018 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 SUPERFAMILY SSF69742 1 158 6.41E-47 T 28-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 SUPERFAMILY SSF69075 317 417 1.15E-27 T 28-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 418 2.8E-167 T 28-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 28-03-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 SUPERFAMILY SSF51735 162 315 1.79E-34 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 Gene3D G3DSA:1.10.1200.70 332 418 1.0E-22 T 28-03-2018 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 2.5E-48 T 28-03-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 Gene3D G3DSA:3.40.50.720 161 313 2.1E-23 T 28-03-2018 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 30.823 T 28-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 6.2E-24 T 28-03-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 5.5E-49 T 28-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AM348_RS15750 11a5936deb10c96127f98b075ea7cc59 418 PIRSF PIRSF000445 1 418 4.2E-154 T 28-03-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 AM348_RS06795 66c5cc0fc2c4de60fe0265b78ce9e933 295 Gene3D G3DSA:1.10.3720.10 63 293 4.7E-38 T 28-03-2018 AM348_RS06795 66c5cc0fc2c4de60fe0265b78ce9e933 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 293 1.9E-18 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06795 66c5cc0fc2c4de60fe0265b78ce9e933 295 Gene3D G3DSA:1.20.58.370 4 43 5.3E-4 T 28-03-2018 IPR035277 Maltose transport system permease protein MalF N-terminal domain AM348_RS06795 66c5cc0fc2c4de60fe0265b78ce9e933 295 SUPERFAMILY SSF161098 56 282 3.53E-51 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 Pfam PF01614 Bacterial transcriptional regulator 135 257 4.1E-12 T 28-03-2018 IPR014757 Transcription regulator IclR, C-terminal AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 SMART SM00346 12 102 1.1E-29 T 28-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 Gene3D G3DSA:1.10.10.10 1 73 2.6E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 Gene3D G3DSA:3.30.450.40 84 266 1.3E-29 T 28-03-2018 IPR029016 GAF domain-like AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 Pfam PF09339 IclR helix-turn-helix domain 15 63 3.2E-14 T 28-03-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 SUPERFAMILY SSF55781 85 257 1.08E-24 T 28-03-2018 IPR029016 GAF domain-like AM348_RS00045 fd7b5aff555b303142a509c843302b76 270 SUPERFAMILY SSF46785 13 83 5.86E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.7E-5 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.7E-5 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 5.4E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 SUPERFAMILY SSF53822 60 340 1.1E-92 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 SUPERFAMILY SSF47413 1 59 1.29E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 Gene3D G3DSA:3.40.50.2300 177 308 9.6E-48 T 28-03-2018 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 58.612 T 28-03-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 Gene3D G3DSA:1.10.260.40 2 54 9.4E-20 T 28-03-2018 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 1.9E-40 T 28-03-2018 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 SMART SM00354 1 71 3.0E-37 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS18275 2bac2c8d86cb64f04d680061ad7016bd 341 Gene3D G3DSA:3.40.50.2300 55 176 2.8E-30 T 28-03-2018 AM348_RS11180 fcda2e969856fdcfd524e66882ac92d8 107 PIRSF PIRSF034456 1 106 1.8E-56 T 28-03-2018 IPR017028 Uncharacterised conserved protein UCP034456 AM348_RS11180 fcda2e969856fdcfd524e66882ac92d8 107 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 23 99 1.1E-8 T 28-03-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 SUPERFAMILY SSF143034 2 64 3.01E-23 T 28-03-2018 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 6.3E-23 T 28-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 6.3E-23 T 28-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 6.3E-23 T 28-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 Pfam PF01632 Ribosomal protein L35 2 60 6.6E-24 T 28-03-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 28-03-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.094 T 28-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM348_RS18875 3b3a2efcf834d34ecd85caba08a7954a 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.6E-27 T 28-03-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 SUPERFAMILY SSF53335 17 266 6.62E-76 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 54.568 T 28-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 28-03-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 Gene3D G3DSA:1.10.8.100 210 264 9.9E-19 T 28-03-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 SMART SM00650 25 198 9.3E-83 T 28-03-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 265 1.7E-86 T 28-03-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 Gene3D G3DSA:3.40.50.150 2 209 5.4E-51 T 28-03-2018 AM348_RS01425 8e8741b9ecb7d158ad956eefdb983fc7 273 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 1.1E-89 T 28-03-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 AM348_RS07990 0588495e4ad03d0582634f07dc2b5f61 97 SUPERFAMILY SSF52091 12 92 3.73E-13 T 28-03-2018 IPR002645 STAS domain AM348_RS07990 0588495e4ad03d0582634f07dc2b5f61 97 Pfam PF13466 STAS domain 14 90 1.8E-15 T 28-03-2018 IPR002645 STAS domain AM348_RS07990 0588495e4ad03d0582634f07dc2b5f61 97 Gene3D G3DSA:3.30.750.24 14 96 1.1E-6 T 28-03-2018 IPR002645 STAS domain AM348_RS12875 5a8ae54ad7f210790cbd4812cd41bc4b 553 Gene3D G3DSA:3.50.50.60 24 351 6.1E-17 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12875 5a8ae54ad7f210790cbd4812cd41bc4b 553 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 28 519 54.245 T 28-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AM348_RS12875 5a8ae54ad7f210790cbd4812cd41bc4b 553 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 31 519 1.1E-237 T 28-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AM348_RS12875 5a8ae54ad7f210790cbd4812cd41bc4b 553 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 32 517 7.8E-212 T 28-03-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 AM348_RS12875 5a8ae54ad7f210790cbd4812cd41bc4b 553 SUPERFAMILY SSF51905 28 91 1.53E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12875 5a8ae54ad7f210790cbd4812cd41bc4b 553 SUPERFAMILY SSF51905 144 359 1.53E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 SUPERFAMILY SSF100950 67 227 3.87E-28 T 28-03-2018 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 2.9E-16 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 9.1E-6 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 9.1E-6 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 Gene3D G3DSA:3.40.50.1360 59 230 1.1E-32 T 28-03-2018 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 Gene3D G3DSA:1.10.10.10 1 56 2.9E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 SUPERFAMILY SSF46785 1 60 8.06E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 SMART SM00420 4 56 1.1E-23 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 Pfam PF00455 DeoR C terminal sensor domain 70 226 1.3E-45 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS16520 5cbb76af0166f12a8f2a54bdfde271d4 250 SMART SM01134 67 227 1.1E-58 T 28-03-2018 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 ProSitePatterns PS00510 Malate synthase signature. 266 281 - T 28-03-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 Gene3D G3DSA:3.20.20.360 86 414 6.5E-108 T 28-03-2018 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 24 532 1.1E-248 T 28-03-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 Pfam PF01274 Malate synthase 13 532 1.6E-212 T 28-03-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 PIRSF PIRSF001363 2 533 1.5E-248 T 28-03-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 Gene3D G3DSA:1.20.1220.12 415 532 6.7E-47 T 28-03-2018 AM348_RS03820 2dc38bf2667a1695cc9c0fb5998785bb 533 SUPERFAMILY SSF51645 16 532 6.41E-186 T 28-03-2018 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Gene3D G3DSA:3.40.50.300 88 290 3.1E-45 T 28-03-2018 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Pfam PF16326 ABC transporter C-terminal domain 561 629 4.8E-21 T 28-03-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Pfam PF12848 ABC transporter 224 294 1.1E-11 T 28-03-2018 IPR032781 ABC-transporter extension domain AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Gene3D G3DSA:1.20.58.410 555 632 1.8E-5 T 28-03-2018 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Gene3D G3DSA:3.40.50.300 291 551 4.2E-58 T 28-03-2018 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 SUPERFAMILY SSF52540 311 501 4.44E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Gene3D G3DSA:3.40.50.300 6 83 7.7E-9 T 28-03-2018 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Pfam PF00005 ABC transporter 336 469 1.2E-24 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 Pfam PF00005 ABC transporter 19 185 1.7E-22 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 SMART SM00382 28 230 8.5E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 SMART SM00382 344 514 2.5E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20580 28d9807bfcc79b70962427cafb7ddcb8 635 SUPERFAMILY SSF52540 9 239 3.02E-50 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 163 46.551 T 28-03-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 2.4E-66 T 28-03-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 1.9E-46 T 28-03-2018 IPR000944 Transcription regulator Rrf2-type AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 28-03-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 Pfam PF02082 Transcriptional regulator 1 83 5.3E-27 T 28-03-2018 IPR000944 Transcription regulator Rrf2-type AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 SUPERFAMILY SSF46785 2 133 5.27E-36 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11500 4136b6643835c7673ba2585e5049aa14 163 Gene3D G3DSA:1.10.10.10 1 139 1.2E-29 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06290 383afe40310b11d8354f9b7eef9a461c 535 Gene3D G3DSA:3.90.76.10 38 203 2.8E-39 T 28-03-2018 AM348_RS06290 383afe40310b11d8354f9b7eef9a461c 535 PIRSF PIRSF002741 21 535 5.0E-122 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS06290 383afe40310b11d8354f9b7eef9a461c 535 Gene3D G3DSA:3.10.105.10 300 506 3.0E-66 T 28-03-2018 AM348_RS06290 383afe40310b11d8354f9b7eef9a461c 535 SUPERFAMILY SSF53850 29 534 1.99E-163 T 28-03-2018 AM348_RS06290 383afe40310b11d8354f9b7eef9a461c 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 1.3E-108 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS06290 383afe40310b11d8354f9b7eef9a461c 535 Gene3D G3DSA:3.40.190.10 204 299 9.0E-30 T 28-03-2018 AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 Pfam PF09327 Domain of unknown function (DUF1983) 893 974 2.7E-15 T 28-03-2018 IPR015406 Domain of unknown function DUF1983 AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 Pfam PF13550 Putative phage tail protein 333 494 1.5E-31 T 28-03-2018 IPR032876 Tip attachment protein J AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 Gene3D G3DSA:2.60.40.10 608 710 2.7E-6 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 SUPERFAMILY SSF49265 618 793 3.23E-6 T 28-03-2018 IPR003961 Fibronectin type III GO:0005515 AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 SMART SM00060 614 692 7.3 T 28-03-2018 IPR003961 Fibronectin type III GO:0005515 AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 SMART SM00060 720 789 0.77 T 28-03-2018 IPR003961 Fibronectin type III GO:0005515 AM348_RS16315 bd582f1345f1e29134d60ccd77fa06cd 1060 Gene3D G3DSA:2.60.40.10 711 809 1.6E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS18165 90f658df6d32900e32af758956474197 424 Gene3D G3DSA:3.10.290.10 331 424 2.4E-20 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS18165 90f658df6d32900e32af758956474197 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 424 5.9E-149 T 28-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM348_RS18165 90f658df6d32900e32af758956474197 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 46.531 T 28-03-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 AM348_RS18165 90f658df6d32900e32af758956474197 424 Gene3D G3DSA:1.10.240.10 228 330 9.2E-33 T 28-03-2018 AM348_RS18165 90f658df6d32900e32af758956474197 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS18165 90f658df6d32900e32af758956474197 424 SMART SM00363 358 419 1.1E-7 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS18165 90f658df6d32900e32af758956474197 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 1.4E-91 T 28-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS18165 90f658df6d32900e32af758956474197 424 SUPERFAMILY SSF52374 4 328 1.08E-109 T 28-03-2018 AM348_RS18165 90f658df6d32900e32af758956474197 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.7E-32 T 28-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM348_RS18165 90f658df6d32900e32af758956474197 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 1.7E-32 T 28-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM348_RS18165 90f658df6d32900e32af758956474197 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 1.7E-32 T 28-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM348_RS18165 90f658df6d32900e32af758956474197 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 1.7E-32 T 28-03-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 AM348_RS18165 90f658df6d32900e32af758956474197 424 SUPERFAMILY SSF55174 327 423 1.22E-20 T 28-03-2018 AM348_RS18165 90f658df6d32900e32af758956474197 424 Gene3D G3DSA:3.40.50.620 1 227 1.2E-70 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS18165 90f658df6d32900e32af758956474197 424 Pfam PF01479 S4 domain 359 403 5.2E-6 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS04575 2a379ec05e8d279e4e6b8274210a570d 296 Gene3D G3DSA:2.70.98.10 27 295 2.9E-39 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS04575 2a379ec05e8d279e4e6b8274210a570d 296 Pfam PF01263 Aldose 1-epimerase 40 218 2.0E-20 T 28-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AM348_RS04575 2a379ec05e8d279e4e6b8274210a570d 296 SUPERFAMILY SSF74650 27 276 2.26E-41 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS10295 be130a55816e80133a749bec106ce84d 283 Pfam PF00950 ABC 3 transport family 11 266 2.8E-78 T 28-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM348_RS10295 be130a55816e80133a749bec106ce84d 283 SUPERFAMILY SSF81345 4 263 2.88E-38 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS10295 be130a55816e80133a749bec106ce84d 283 Gene3D G3DSA:1.10.3470.10 3 278 4.8E-28 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 SUPERFAMILY SSF55681 4 204 4.72E-67 T 28-03-2018 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 26 204 8.7E-79 T 28-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 Hamap MF_00013 Octanoyltransferase [lipB]. 5 206 37.407 T 28-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 75 128 2.0E-23 T 28-03-2018 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 Gene3D G3DSA:3.30.930.10 2 204 2.5E-58 T 28-03-2018 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 PIRSF PIRSF016262 2 209 9.8E-56 T 28-03-2018 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 71 86 - T 28-03-2018 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 AM348_RS22140 62a1fc02506df6a3a27c75076220be74 213 Pfam PF03099 Biotin/lipoate A/B protein ligase family 63 159 8.5E-7 T 28-03-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 AM348_RS22355 41053938ae09c27fdccb8870cf87a1a9 318 SUPERFAMILY SSF53807 31 313 1.1E-47 T 28-03-2018 AM348_RS22355 41053938ae09c27fdccb8870cf87a1a9 318 Gene3D G3DSA:3.40.50.1980 155 318 2.1E-32 T 28-03-2018 AM348_RS22355 41053938ae09c27fdccb8870cf87a1a9 318 Gene3D G3DSA:3.40.50.1980 20 154 1.2E-21 T 28-03-2018 AM348_RS22355 41053938ae09c27fdccb8870cf87a1a9 318 Pfam PF01497 Periplasmic binding protein 49 297 4.5E-28 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 6.5E-42 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 6.5E-42 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 6.5E-42 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 6.5E-42 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 Gene3D G3DSA:3.10.420.10 1 153 1.6E-56 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.593 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 Pfam PF02556 Preprotein translocase subunit SecB 5 144 6.1E-58 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 SUPERFAMILY SSF54611 2 141 8.28E-54 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS05980 f5f817116ad388d71f5f67355b50c351 155 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 147 5.1E-71 T 28-03-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 460 507 4.3E-28 T 28-03-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 SUPERFAMILY SSF55021 2 69 5.42E-5 T 28-03-2018 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 Gene3D G3DSA:1.10.8.60 372 442 8.6E-18 T 28-03-2018 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 SUPERFAMILY SSF46689 453 507 8.51E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 SMART SM00091 80 146 2.9E-5 T 28-03-2018 IPR000014 PAS domain AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 Gene3D G3DSA:3.30.70.260 1 81 2.6E-7 T 28-03-2018 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 285 300 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 412 421 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 Pfam PF00158 Sigma-54 interaction domain 206 365 2.5E-55 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 Gene3D G3DSA:3.30.450.20 82 185 2.0E-10 T 28-03-2018 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 Gene3D G3DSA:1.10.10.60 448 508 2.2E-7 T 28-03-2018 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 Gene3D G3DSA:3.40.50.300 201 371 9.5E-23 T 28-03-2018 AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 SUPERFAMILY SSF55785 82 170 4.95E-7 T 28-03-2018 IPR000014 PAS domain AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 SUPERFAMILY SSF52540 206 440 1.16E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16645 22941665a811c33e7cc46046b046dd91 514 SMART SM00382 226 363 8.8E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06965 edfbfb5a9c0f1f13881d94083dcaba2d 227 Pfam PF00156 Phosphoribosyl transferase domain 145 224 1.2E-7 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS06965 edfbfb5a9c0f1f13881d94083dcaba2d 227 SUPERFAMILY SSF53271 47 225 1.7E-35 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS06965 edfbfb5a9c0f1f13881d94083dcaba2d 227 Gene3D G3DSA:3.40.50.2020 57 227 1.7E-24 T 28-03-2018 AM348_RS06965 edfbfb5a9c0f1f13881d94083dcaba2d 227 TIGRFAM TIGR00201 comF: comF family protein 23 225 4.9E-71 T 28-03-2018 IPR005222 Competence protein ComF AM348_RS18905 403203ee0b74a390a8d7895c3b9244eb 286 SUPERFAMILY SSF56112 3 280 6.0E-41 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS18905 403203ee0b74a390a8d7895c3b9244eb 286 Gene3D G3DSA:3.30.200.20 1 91 4.1E-19 T 28-03-2018 AM348_RS18905 403203ee0b74a390a8d7895c3b9244eb 286 PIRSF PIRSF006221 1 286 7.0E-94 T 28-03-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AM348_RS18905 403203ee0b74a390a8d7895c3b9244eb 286 Gene3D G3DSA:3.90.1200.10 95 278 1.9E-16 T 28-03-2018 AM348_RS18905 403203ee0b74a390a8d7895c3b9244eb 286 Pfam PF03881 Fructosamine kinase 1 285 5.5E-114 T 28-03-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 Pfam PF01817 Chorismate mutase type II 11 89 2.6E-16 T 28-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 SUPERFAMILY SSF48600 6 93 1.52E-22 T 28-03-2018 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 Gene3D G3DSA:1.20.59.10 1 112 1.6E-29 T 28-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 7 89 7.2E-41 T 28-03-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 Gene3D G3DSA:3.30.70.260 288 383 3.7E-25 T 28-03-2018 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 Gene3D G3DSA:3.40.190.10 198 273 1.6E-23 T 28-03-2018 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 Pfam PF00800 Prephenate dehydratase 106 286 2.2E-59 T 28-03-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 SMART SM00830 11 91 3.5E-25 T 28-03-2018 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 SUPERFAMILY SSF53850 105 291 5.75E-54 T 28-03-2018 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 SUPERFAMILY SSF55021 280 377 6.14E-23 T 28-03-2018 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 PIRSF PIRSF001500 1 380 1.6E-143 T 28-03-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 325 332 - T 28-03-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 Gene3D G3DSA:3.40.190.10 113 197 4.9E-30 T 28-03-2018 AM348_RS11120 33037b2ab58b7cf29f30e9b4626d8b89 386 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 261 283 - T 28-03-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 PIRSF PIRSF004640 1 363 8.0E-148 T 28-03-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 350 2.0E-125 T 28-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 357 34.687 T 28-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 SUPERFAMILY SSF56014 266 350 1.0E-9 T 28-03-2018 AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 Pfam PF04551 GcpE protein 14 353 2.5E-131 T 28-03-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 Gene3D G3DSA:3.20.20.120 18 206 1.8E-18 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS11585 042c9ad52a4a55858db7004f8545a0b9 372 SUPERFAMILY SSF51717 15 208 2.43E-10 T 28-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 4.0E-4 T 28-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 SUPERFAMILY SSF47336 2 77 1.44E-24 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 7.7E-17 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.327 T 28-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 Gene3D G3DSA:1.10.1200.10 1 78 8.2E-29 T 28-03-2018 AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 28-03-2018 IPR006162 Phosphopantetheine attachment site AM348_RS19815 10c00c0561de7dcf4030f0d748031d11 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 1.1E-38 T 28-03-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 SUPERFAMILY SSF51905 9 322 1.3E-44 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 Gene3D G3DSA:3.50.50.60 2 393 5.2E-56 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 Pfam PF04324 BFD-like [2Fe-2S] binding domain 432 484 2.8E-9 T 28-03-2018 IPR007419 BFD-like [2Fe-2S]-binding domain AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 10 539 9.1E-265 T 28-03-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 311 317 3.1E-23 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 9 21 3.1E-23 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 38 50 3.1E-23 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 3.1E-23 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 32 3.1E-23 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 82 94 3.1E-23 T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 14 31 - T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 Pfam PF01266 FAD dependent oxidoreductase 10 359 2.0E-52 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS12765 1a4a6a7978be5855388765a2d33eb237 542 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 28-03-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-163560 AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 70 172 1.7E-46 T 28-03-2018 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 Pfam PF00691 OmpA family 71 166 1.3E-21 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 PRINTS PR01021 OMPA domain signature 117 133 8.3E-17 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 PRINTS PR01021 OMPA domain signature 102 117 8.3E-17 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 PRINTS PR01021 OMPA domain signature 72 94 8.3E-17 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 SUPERFAMILY SSF103088 59 171 1.05E-34 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 Gene3D G3DSA:3.30.1330.60 43 172 1.3E-34 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS21540 c77fac52a25452f8e25718ec6c8bdb1e 172 ProSitePatterns PS01068 OmpA-like domain. 104 148 - T 28-03-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 AM348_RS00940 2a2f273feeb13727254d196e0eaf9084 869 Pfam PF00577 Outer membrane usher protein 190 762 5.2E-162 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS00940 2a2f273feeb13727254d196e0eaf9084 869 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 302 312 - T 28-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM348_RS00940 2a2f273feeb13727254d196e0eaf9084 869 Pfam PF13954 PapC N-terminal domain 26 176 5.8E-38 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS00940 2a2f273feeb13727254d196e0eaf9084 869 SUPERFAMILY SSF141729 25 149 9.16E-30 T 28-03-2018 AM348_RS00940 2a2f273feeb13727254d196e0eaf9084 869 Pfam PF13953 PapC C-terminal domain 772 836 7.6E-16 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 Gene3D G3DSA:1.10.150.240 32 79 1.4E-19 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 191 1.6E-23 T 28-03-2018 IPR023214 HAD-like domain AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 Gene3D G3DSA:3.40.50.1000 2 31 0.19 T 28-03-2018 IPR023214 HAD-like domain AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 Gene3D G3DSA:3.40.50.1000 80 222 1.3E-28 T 28-03-2018 IPR023214 HAD-like domain AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 SUPERFAMILY SSF56784 7 217 1.81E-49 T 28-03-2018 IPR023214 HAD-like domain AM348_RS18915 46a6d404e0cadac9eac78ccc88bb5607 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 191 1.3E-11 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS15250 f3ba7331884fb39ed3dc7b7976c4119b 112 Pfam PF10709 Protein of unknown function (DUF2511) 25 112 1.5E-43 T 28-03-2018 IPR019648 Protein of unknown function DUF2511 AM348_RS19325 27b73682c513b770870615552d06bd6b 540 PIRSF PIRSF002741 5 529 5.9E-76 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS19325 27b73682c513b770870615552d06bd6b 540 Gene3D G3DSA:3.90.76.10 62 183 4.8E-24 T 28-03-2018 AM348_RS19325 27b73682c513b770870615552d06bd6b 540 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 440 8.1E-77 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS19325 27b73682c513b770870615552d06bd6b 540 SUPERFAMILY SSF53850 39 513 1.05E-94 T 28-03-2018 AM348_RS19325 27b73682c513b770870615552d06bd6b 540 Gene3D G3DSA:3.40.190.10 184 300 5.6E-23 T 28-03-2018 AM348_RS19325 27b73682c513b770870615552d06bd6b 540 Gene3D G3DSA:3.10.105.10 301 491 1.7E-36 T 28-03-2018 AM348_RS02675 34e04f2f3deae248e99e744df77121d8 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 4.0E-29 T 28-03-2018 IPR009491 Protein of unknown function DUF1107 AM348_RS02675 34e04f2f3deae248e99e744df77121d8 68 Gene3D G3DSA:3.30.1910.10 1 62 1.1E-30 T 28-03-2018 AM348_RS02675 34e04f2f3deae248e99e744df77121d8 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 2.9E-29 T 28-03-2018 IPR009491 Protein of unknown function DUF1107 AM348_RS01840 0ca90ceaaf0331aad114bf341e76b2c7 148 Pfam PF00583 Acetyltransferase (GNAT) family 17 120 4.7E-17 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS01840 0ca90ceaaf0331aad114bf341e76b2c7 148 Gene3D G3DSA:3.40.630.30 1 148 8.3E-34 T 28-03-2018 AM348_RS01840 0ca90ceaaf0331aad114bf341e76b2c7 148 SUPERFAMILY SSF55729 3 146 1.05E-32 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS01840 0ca90ceaaf0331aad114bf341e76b2c7 148 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 11 142 4.3E-44 T 28-03-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 AM348_RS13265 83c735bc3a72b649608d38ceb9ad6e8e 233 SUPERFAMILY SSF56529 22 233 1.44E-64 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS13265 83c735bc3a72b649608d38ceb9ad6e8e 233 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 28 229 2.8E-48 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS13265 83c735bc3a72b649608d38ceb9ad6e8e 233 Gene3D G3DSA:3.90.850.10 1 233 7.7E-70 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 Pfam PF02881 SRP54-type protein, helical bundle domain 216 281 5.2E-14 T 28-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 473 486 - T 28-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 Gene3D G3DSA:3.40.50.300 292 501 1.2E-41 T 28-03-2018 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 228 500 65.917 T 28-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 SUPERFAMILY SSF52540 292 499 1.92E-53 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 SMART SM00962 299 500 9.8E-126 T 28-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 Gene3D G3DSA:1.20.120.140 192 286 2.0E-23 T 28-03-2018 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 SMART SM00382 298 489 7.6E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 SMART SM00963 205 285 1.0E-24 T 28-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 Pfam PF00448 SRP54-type protein, GTPase domain 299 499 1.8E-79 T 28-03-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 228 499 4.0E-116 T 28-03-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 AM348_RS06725 63ccf965846e82797f0a8bf7c4c59f53 503 SUPERFAMILY SSF47364 200 279 9.16E-23 T 28-03-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 AM348_RS16735 48f93e376ae8150581d68c019c8fd9ca 187 Pfam PF01713 Smr domain 89 169 1.0E-17 T 28-03-2018 IPR002625 Smr domain AM348_RS16735 48f93e376ae8150581d68c019c8fd9ca 187 SUPERFAMILY SSF160443 87 169 1.96E-11 T 28-03-2018 IPR002625 Smr domain AM348_RS16735 48f93e376ae8150581d68c019c8fd9ca 187 SMART SM00463 85 169 2.2E-16 T 28-03-2018 IPR002625 Smr domain AM348_RS09180 c8b70390bb951874e156dbe59633b2aa 360 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 214 242 - T 28-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM348_RS09180 c8b70390bb951874e156dbe59633b2aa 360 Pfam PF11873 Domain of unknown function (DUF3393) 3 192 4.2E-74 T 28-03-2018 IPR024570 Murein transglycosylase-C, N-terminal AM348_RS09180 c8b70390bb951874e156dbe59633b2aa 360 SUPERFAMILY SSF53955 192 358 5.63E-36 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS09180 c8b70390bb951874e156dbe59633b2aa 360 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 1 359 65.766 T 28-03-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 AM348_RS09180 c8b70390bb951874e156dbe59633b2aa 360 Gene3D G3DSA:1.10.530.10 183 358 1.2E-34 T 28-03-2018 AM348_RS09180 c8b70390bb951874e156dbe59633b2aa 360 Pfam PF01464 Transglycosylase SLT domain 197 320 2.6E-31 T 28-03-2018 IPR008258 Transglycosylase SLT domain 1 AM348_RS14515 15ed41047288c58f573e88f22a59bb1c 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.0E-33 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS14515 15ed41047288c58f573e88f22a59bb1c 222 Gene3D G3DSA:1.10.3720.10 5 220 1.3E-45 T 28-03-2018 AM348_RS14515 15ed41047288c58f573e88f22a59bb1c 222 SUPERFAMILY SSF161098 13 200 8.76E-52 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS14515 15ed41047288c58f573e88f22a59bb1c 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 213 6.8E-25 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 33 432 1.6E-146 T 28-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 Pfam PF08946 Osmosensory transporter coiled coil 454 499 3.6E-22 T 28-03-2018 IPR015041 Osmosensory transporter coiled coil AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 Gene3D G3DSA:1.20.1250.20 23 237 3.7E-23 T 28-03-2018 AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 ProSitePatterns PS00216 Sugar transport proteins signature 1. 315 332 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 SUPERFAMILY SSF103473 24 441 3.01E-69 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 Gene3D G3DSA:1.20.1250.20 243 483 5.4E-28 T 28-03-2018 AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 SUPERFAMILY SSF103661 465 497 1.44E-12 T 28-03-2018 IPR015041 Osmosensory transporter coiled coil AM348_RS03210 416c1bf66af2eaedfd8fc6f061f36d1c 500 Pfam PF00083 Sugar (and other) transporter 28 448 5.1E-74 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS17705 d3ba762be9d9c3cec2f31364e03c2145 462 Gene3D G3DSA:3.40.605.10 2 251 2.8E-70 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS17705 d3ba762be9d9c3cec2f31364e03c2145 462 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 261 272 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS17705 d3ba762be9d9c3cec2f31364e03c2145 462 Pfam PF00171 Aldehyde dehydrogenase family 9 457 6.7E-140 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS17705 d3ba762be9d9c3cec2f31364e03c2145 462 SUPERFAMILY SSF53720 9 460 1.96E-138 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS17705 d3ba762be9d9c3cec2f31364e03c2145 462 Gene3D G3DSA:3.40.309.10 252 443 8.3E-66 T 28-03-2018 AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 Gene3D G3DSA:3.40.190.10 87 171 2.6E-16 T 28-03-2018 AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 Gene3D G3DSA:3.40.190.10 172 258 2.7E-25 T 28-03-2018 AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 2.5E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 Pfam PF03466 LysR substrate binding domain 88 289 2.4E-42 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 SUPERFAMILY SSF46785 8 110 4.79E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 Gene3D G3DSA:1.10.10.10 4 86 1.5E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18675 cccbf2d75a47c5a2288431942a868b6f 291 SUPERFAMILY SSF53850 88 289 9.59E-44 T 28-03-2018 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 SUPERFAMILY SSF47240 11 167 5.65E-50 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 ProSitePatterns PS00819 Dps protein family signature 2. 77 91 - T 28-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 2.3E-13 T 28-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 2.3E-13 T 28-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 2.3E-13 T 28-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 Pfam PF00210 Ferritin-like domain 31 166 2.6E-22 T 28-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 28-03-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 Gene3D G3DSA:1.20.1260.10 1 167 1.0E-40 T 28-03-2018 IPR012347 Ferritin-related AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 48.458 T 28-03-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 AM348_RS21165 fb392700591fb46b1c1d4c9ea9b771cd 167 PIRSF PIRSF005900 8 167 3.5E-43 T 28-03-2018 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 AM348_RS10155 aa246b4be851808c65bb59bcaf9baf1e 197 SUPERFAMILY SSF52507 1 185 1.7E-63 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS10155 aa246b4be851808c65bb59bcaf9baf1e 197 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 185 36.952 T 28-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 AM348_RS10155 aa246b4be851808c65bb59bcaf9baf1e 197 Gene3D G3DSA:3.40.50.1950 1 197 6.1E-56 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS10155 aa246b4be851808c65bb59bcaf9baf1e 197 Hamap MF_01986 Probable UbiX-like flavin prenyltransferase. 1 189 53.502 T 28-03-2018 IPR032901 Probable UbiX-like flavin prenyltransferase AM348_RS10155 aa246b4be851808c65bb59bcaf9baf1e 197 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 2 183 2.1E-73 T 28-03-2018 IPR004507 Flavin prenyltransferase UbiX/Pad1 AM348_RS10155 aa246b4be851808c65bb59bcaf9baf1e 197 Pfam PF02441 Flavoprotein 1 164 3.5E-24 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS17140 e2added0f3bbb15ca299b0d0ef25c797 375 Pfam PF07690 Major Facilitator Superfamily 20 343 1.3E-37 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17140 e2added0f3bbb15ca299b0d0ef25c797 375 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 8 351 3.9E-60 T 28-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM348_RS17140 e2added0f3bbb15ca299b0d0ef25c797 375 Gene3D G3DSA:1.20.1250.20 1 193 1.8E-29 T 28-03-2018 AM348_RS17140 e2added0f3bbb15ca299b0d0ef25c797 375 SUPERFAMILY SSF103473 4 372 2.88E-47 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17140 e2added0f3bbb15ca299b0d0ef25c797 375 Gene3D G3DSA:1.20.1250.20 194 373 2.4E-6 T 28-03-2018 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 SMART SM00388 242 308 1.2E-15 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 Gene3D G3DSA:3.30.565.10 308 461 4.2E-45 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 SUPERFAMILY SSF103190 32 155 2.67E-13 T 28-03-2018 IPR029151 Periplasmic sensor domain-like AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 Gene3D G3DSA:1.10.287.130 226 304 1.9E-14 T 28-03-2018 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 304 7.6E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 351 455 3.9E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 1.7E-19 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 1.7E-19 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 1.7E-19 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 1.7E-19 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 SUPERFAMILY SSF55874 298 455 3.01E-42 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 SMART SM00387 350 457 5.4E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 SUPERFAMILY SSF47384 233 304 1.96E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03880 3b97fc80dff0c0a5e288c42eeb24c005 461 Gene3D G3DSA:3.30.450.20 30 195 1.6E-8 T 28-03-2018 AM348_RS06770 3b77dca0ec71c8d3c5b6f0864cbcada6 425 Pfam PF02653 Branched-chain amino acid transport system / permease component 112 398 3.3E-60 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS06770 3b77dca0ec71c8d3c5b6f0864cbcada6 425 Pfam PF11862 Domain of unknown function (DUF3382) 6 103 2.7E-24 T 28-03-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal AM348_RS06770 3b77dca0ec71c8d3c5b6f0864cbcada6 425 Gene3D G3DSA:1.10.3470.10 100 401 1.3E-48 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 SMART SM00354 1 71 5.0E-26 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.3E-18 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 Gene3D G3DSA:1.10.260.40 2 53 1.9E-20 T 28-03-2018 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 SUPERFAMILY SSF47413 2 59 1.55E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 SUPERFAMILY SSF53822 59 296 5.5E-18 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 Gene3D G3DSA:3.40.50.2300 54 164 3.4E-10 T 28-03-2018 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.0E-5 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.0E-5 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 Pfam PF13377 Periplasmic binding protein-like domain 162 293 5.5E-9 T 28-03-2018 AM348_RS05610 2e2e1e998a0f1d38aeb1e4c2227d8ab4 315 Gene3D G3DSA:3.40.50.2300 165 299 4.5E-14 T 28-03-2018 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 Pfam PF00267 Gram-negative porin 27 362 5.4E-150 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 Gene3D G3DSA:2.40.160.10 32 362 1.4E-53 T 28-03-2018 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 238 255 1.6E-72 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.6E-72 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.6E-72 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 1.6E-72 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 268 287 1.6E-72 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 1.6E-72 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 312 328 - T 28-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 SUPERFAMILY SSF56935 22 362 1.78E-81 T 28-03-2018 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 1.2E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 1.2E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 312 329 1.2E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 1.2E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS17360 25dd9299aabd4a7ba8ec0b3a930e4cee 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 232 244 1.2E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS03905 a2398753bf70317f7ad96afdb16e11d2 226 Hamap MF_00801 Endonuclease V [nfi]. 2 216 35.243 T 28-03-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 AM348_RS03905 a2398753bf70317f7ad96afdb16e11d2 226 Pfam PF04493 Endonuclease V 12 206 4.4E-73 T 28-03-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 28-03-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 51.789 T 28-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 Gene3D G3DSA:3.40.718.10 1 363 3.6E-132 T 28-03-2018 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 SMART SM01329 6 355 1.4E-203 T 28-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 8.3E-173 T 28-03-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 SUPERFAMILY SSF53659 2 360 7.02E-124 T 28-03-2018 AM348_RS01295 b480c7d46efb7d1a6ff3f0e688ae869d 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 1.2E-139 T 28-03-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 Gene3D G3DSA:3.50.50.60 5 264 1.4E-74 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.75 T 28-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 3.0E-302 T 28-03-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 Pfam PF01134 Glucose inhibited division protein A 8 398 6.8E-169 T 28-03-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 28-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 Pfam PF13932 GidA associated domain 403 616 8.2E-78 T 28-03-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 SMART SM01228 546 617 4.2E-44 T 28-03-2018 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 Gene3D G3DSA:1.10.10.10 506 629 0.0037 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 28-03-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 SUPERFAMILY SSF51905 97 261 8.66E-51 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS05240 37a613a1300c04fd9dc7a4e0db96a6b0 629 SUPERFAMILY SSF51905 7 66 8.66E-51 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS14995 1b5379873398627b5bc68e4af6f53339 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 28-03-2018 IPR000540 Flagellar motor protein MotA, conserved site AM348_RS14995 1b5379873398627b5bc68e4af6f53339 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 2.5E-117 T 28-03-2018 IPR022522 Flagellar motor stator, MotA AM348_RS14995 1b5379873398627b5bc68e4af6f53339 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 140 239 1.7E-11 T 28-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 Gene3D G3DSA:3.40.190.80 146 266 9.8E-35 T 28-03-2018 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 28-03-2018 IPR020583 Inositol monophosphatase, metal-binding site AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 Pfam PF00459 Inositol monophosphatase family 2 259 4.3E-72 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 8.1E-59 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 8.1E-59 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 8.1E-59 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 8.1E-59 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 8.1E-59 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 8.1E-59 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 3.0E-36 T 28-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 3.0E-36 T 28-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 3.0E-36 T 28-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 3.0E-36 T 28-03-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 Gene3D G3DSA:3.30.540.10 1 145 2.3E-49 T 28-03-2018 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 28-03-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AM348_RS11490 1a38d4f5a5f76628d7a7d8a47fa0f63a 267 SUPERFAMILY SSF56655 1 259 3.27E-84 T 28-03-2018 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 Gene3D G3DSA:3.30.572.10 1 264 1.9E-134 T 28-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 28-03-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 1.0E-93 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 2.3E-42 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 SUPERFAMILY SSF55831 1 264 1.23E-131 T 28-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.608 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.6E-47 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.6E-47 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.6E-47 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.6E-47 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.6E-47 T 28-03-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS09760 a023319885f3c620d98fd68d9c9a43c1 264 Pfam PF00303 Thymidylate synthase 2 264 4.1E-128 T 28-03-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 AM348_RS12620 91ba86bd1236d93ccfcb32a5c6c7626c 184 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 157 2.4E-33 T 28-03-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS16825 c788cc09beeee0d8394bc3911f226974 879 Pfam PF11739 Dicarboxylate transport 657 858 1.4E-62 T 28-03-2018 IPR021730 Dicarboxylate transport AM348_RS19425 5b004fed0d5f33ae3e467464f425dfb9 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 282 5.5E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19425 5b004fed0d5f33ae3e467464f425dfb9 285 Gene3D G3DSA:1.10.3720.10 8 284 3.2E-42 T 28-03-2018 AM348_RS19425 5b004fed0d5f33ae3e467464f425dfb9 285 SUPERFAMILY SSF161098 6 274 1.2E-52 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS22870 7cdb33e18f3c2a691b3f9e7172e98cb1 714 Gene3D G3DSA:2.170.130.10 28 167 4.1E-32 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS22870 7cdb33e18f3c2a691b3f9e7172e98cb1 714 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 28-03-2018 IPR010916 TonB box, conserved site AM348_RS22870 7cdb33e18f3c2a691b3f9e7172e98cb1 714 SUPERFAMILY SSF56935 38 714 8.24E-100 T 28-03-2018 AM348_RS22870 7cdb33e18f3c2a691b3f9e7172e98cb1 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 158 8.5E-23 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS22870 7cdb33e18f3c2a691b3f9e7172e98cb1 714 Pfam PF00593 TonB dependent receptor 223 710 1.3E-42 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS22870 7cdb33e18f3c2a691b3f9e7172e98cb1 714 Gene3D G3DSA:2.40.170.20 168 714 4.4E-55 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 Pfam PF14863 Alkyl sulfatase dimerisation 390 528 9.9E-59 T 28-03-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 Pfam PF14864 Alkyl sulfatase C-terminal 536 660 6.4E-38 T 28-03-2018 IPR029229 Alkyl sulfatase, C-terminal AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 SUPERFAMILY SSF55718 538 660 1.53E-34 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 SUPERFAMILY SSF56281 32 530 3.36E-150 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 SMART SM00849 131 353 2.3E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 Gene3D G3DSA:3.60.15.10 106 402 1.9E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 Gene3D G3DSA:3.30.1050.10 530 660 5.6E-29 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS17565 3cc938734c98bfbe0b83b15251987c8a 660 Pfam PF00753 Metallo-beta-lactamase superfamily 128 353 4.7E-34 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS01770 7b83567713f1a44dac975eb836801e5b 213 Pfam PF10144 Bacterial virulence factor haemolysin 1 160 3.0E-65 T 28-03-2018 IPR019305 Uncharacterised protein family Smp AM348_RS01770 7b83567713f1a44dac975eb836801e5b 213 Gene3D G3DSA:3.30.450.20 29 151 9.0E-6 T 28-03-2018 AM348_RS17795 7c14a470b976f7d92fd1599348dc7f4b 681 SUPERFAMILY SSF55486 4 679 1.39E-171 T 28-03-2018 AM348_RS17795 7c14a470b976f7d92fd1599348dc7f4b 681 Gene3D G3DSA:1.20.1050.40 10 144 6.2E-37 T 28-03-2018 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal AM348_RS17795 7c14a470b976f7d92fd1599348dc7f4b 681 Pfam PF01432 Peptidase family M3 231 678 8.6E-139 T 28-03-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 AM348_RS17795 7c14a470b976f7d92fd1599348dc7f4b 681 Gene3D G3DSA:1.10.1370.10 457 681 4.4E-55 T 28-03-2018 AM348_RS17795 7c14a470b976f7d92fd1599348dc7f4b 681 Gene3D G3DSA:1.10.1370.10 146 371 1.6E-37 T 28-03-2018 AM348_RS19705 bc7e7e828fd98f723eb68207d134a1ff 384 SUPERFAMILY SSF103473 3 380 6.54E-45 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS19705 bc7e7e828fd98f723eb68207d134a1ff 384 Gene3D G3DSA:1.20.1250.20 2 195 7.1E-19 T 28-03-2018 AM348_RS19705 bc7e7e828fd98f723eb68207d134a1ff 384 Pfam PF07690 Major Facilitator Superfamily 9 321 1.6E-32 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19705 bc7e7e828fd98f723eb68207d134a1ff 384 Gene3D G3DSA:1.20.1250.20 196 382 2.8E-20 T 28-03-2018 AM348_RS08875 c2886e9aed02068f1249192c5d27ac8c 245 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 7.5E-50 T 28-03-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 AM348_RS08875 c2886e9aed02068f1249192c5d27ac8c 245 Pfam PF01553 Acyltransferase 57 180 7.9E-32 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS08875 c2886e9aed02068f1249192c5d27ac8c 245 SUPERFAMILY SSF69593 2 240 6.41E-61 T 28-03-2018 AM348_RS08875 c2886e9aed02068f1249192c5d27ac8c 245 Gene3D G3DSA:3.40.1130.10 46 244 4.3E-38 T 28-03-2018 AM348_RS08875 c2886e9aed02068f1249192c5d27ac8c 245 SMART SM00563 67 182 3.4E-39 T 28-03-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 AM348_RS04760 db2f0f67ff819d46a1bd747c6b223f56 308 Gene3D G3DSA:3.30.420.40 1 114 7.3E-25 T 28-03-2018 AM348_RS04760 db2f0f67ff819d46a1bd747c6b223f56 308 Pfam PF00480 ROK family 3 296 2.1E-75 T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS04760 db2f0f67ff819d46a1bd747c6b223f56 308 SUPERFAMILY SSF53067 2 299 1.6E-63 T 28-03-2018 AM348_RS04760 db2f0f67ff819d46a1bd747c6b223f56 308 ProSitePatterns PS01125 ROK family signature. 129 156 - T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS04760 db2f0f67ff819d46a1bd747c6b223f56 308 Gene3D G3DSA:3.30.420.40 115 307 1.2E-52 T 28-03-2018 AM348_RS05765 907ff0f385b7d6d222d6c322acb5c700 225 Gene3D G3DSA:2.60.120.10 33 217 1.7E-6 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS05765 907ff0f385b7d6d222d6c322acb5c700 225 SUPERFAMILY SSF51182 90 179 3.16E-5 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS05765 907ff0f385b7d6d222d6c322acb5c700 225 Pfam PF07385 D-lyxose isomerase 1 222 4.3E-88 T 28-03-2018 IPR010864 D-lyxose isomerase KEGG: 00040+5.3.1.15 AM348_RS21355 57f6bd78695cf5214694ec58231354c8 232 Pfam PF13500 AAA domain 4 208 6.1E-37 T 28-03-2018 AM348_RS21355 57f6bd78695cf5214694ec58231354c8 232 Gene3D G3DSA:3.40.50.300 1 217 3.0E-56 T 28-03-2018 AM348_RS21355 57f6bd78695cf5214694ec58231354c8 232 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 1.2E-62 T 28-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM348_RS21355 57f6bd78695cf5214694ec58231354c8 232 SUPERFAMILY SSF52540 4 209 8.5E-62 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21355 57f6bd78695cf5214694ec58231354c8 232 PIRSF PIRSF006755 1 231 6.1E-82 T 28-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM348_RS21355 57f6bd78695cf5214694ec58231354c8 232 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 219 29.583 T 28-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 SMART SM01134 72 233 7.9E-57 T 28-03-2018 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 SMART SM00420 6 58 3.8E-16 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 Pfam PF00455 DeoR C terminal sensor domain 74 232 4.2E-43 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 SUPERFAMILY SSF100950 74 233 3.45E-27 T 28-03-2018 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 Gene3D G3DSA:3.40.50.1360 72 237 4.4E-32 T 28-03-2018 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.5E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.5E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 Gene3D G3DSA:1.10.10.10 1 59 5.0E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 5.6E-16 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS03700 56c6fa0b68b51c31ca0527b303b9070b 252 SUPERFAMILY SSF46785 5 62 2.0E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22860 ce130e4f4222c0c8b71ee412c0f799a4 238 Pfam PF11340 Protein of unknown function (DUF3142) 82 176 1.0E-19 T 28-03-2018 IPR021488 Protein of unknown function DUF3142 AM348_RS22860 ce130e4f4222c0c8b71ee412c0f799a4 238 Gene3D G3DSA:3.20.20.80 86 222 8.2E-4 T 28-03-2018 AM348_RS07215 1773f90997d58c6a2ec1d6701cfd65ca 340 Gene3D G3DSA:3.40.50.1820 46 336 4.8E-25 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS07215 1773f90997d58c6a2ec1d6701cfd65ca 340 Pfam PF00561 alpha/beta hydrolase fold 74 313 9.3E-28 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS07215 1773f90997d58c6a2ec1d6701cfd65ca 340 SUPERFAMILY SSF53474 36 316 3.33E-36 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS07215 1773f90997d58c6a2ec1d6701cfd65ca 340 PIRSF PIRSF005211 14 340 1.2E-106 T 28-03-2018 IPR012020 AB hydrolase 4 family AM348_RS07215 1773f90997d58c6a2ec1d6701cfd65ca 340 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 240 281 - T 28-03-2018 IPR000952 AB hydrolase 4, conserved site AM348_RS20965 7090ec88a346f87a9627e7c2388f1cd9 126 Pfam PF11045 Putative inner membrane protein of Enterobacteriaceae 4 117 2.4E-44 T 28-03-2018 IPR020368 Uncharacterised protein family YbjM GO:0016021 AM348_RS20965 7090ec88a346f87a9627e7c2388f1cd9 126 ProDom PD079046 MEMBRANE INNER YBJM TRANSMEMBRANE 1 117 3.0E-35 T 28-03-2018 IPR020368 Uncharacterised protein family YbjM GO:0016021 AM348_RS01555 23372b246e62e1d8180ca44e43111c92 304 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 293 1.7E-83 T 28-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM348_RS01555 23372b246e62e1d8180ca44e43111c92 304 Gene3D G3DSA:3.90.245.10 1 304 6.8E-100 T 28-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM348_RS01555 23372b246e62e1d8180ca44e43111c92 304 SUPERFAMILY SSF53590 3 300 5.62E-96 T 28-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM348_RS01555 23372b246e62e1d8180ca44e43111c92 304 Hamap MF_01432 Non-specific ribonucleoside hydrolase RihC [rihC]. 1 304 69.04 T 28-03-2018 IPR022976 Non-specific ribonucleoside hydrolase RihC GO:0016798 AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 Pfam PF13419 Haloacid dehalogenase-like hydrolase 51 184 3.4E-13 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 Gene3D G3DSA:3.40.50.1000 79 196 1.1E-21 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 SUPERFAMILY SSF56784 3 194 6.76E-43 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 Gene3D G3DSA:1.10.150.240 18 78 9.5E-19 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 4.0E-7 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 4.0E-7 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 4.0E-7 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 4.0E-7 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS04570 fe42069e9031ae1d533539800ace6643 199 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 184 4.0E-19 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS20210 346b1595237a7c3cb9b63ae75c095c56 235 SMART SM00418 19 98 9.7E-11 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS20210 346b1595237a7c3cb9b63ae75c095c56 235 SUPERFAMILY SSF46785 7 98 4.04E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20210 346b1595237a7c3cb9b63ae75c095c56 235 Pfam PF01022 Bacterial regulatory protein, arsR family 26 71 1.4E-6 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS20210 346b1595237a7c3cb9b63ae75c095c56 235 Gene3D G3DSA:1.10.10.10 7 190 1.5E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18140 3b7d71472451a01e821e859de9788671 211 Gene3D G3DSA:1.10.340.30 25 116 9.1E-23 T 28-03-2018 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 28-03-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 28-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.8E-19 T 28-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 28-03-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 PIRSF PIRSF001435 1 210 1.9E-50 T 28-03-2018 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 SMART SM00525 186 206 4.4E-5 T 28-03-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.6E-89 T 28-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 Gene3D G3DSA:1.10.1670.10 117 210 1.2E-29 T 28-03-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 SUPERFAMILY SSF48150 3 208 5.81E-73 T 28-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 Pfam PF00633 Helix-hairpin-helix motif 100 127 2.8E-7 T 28-03-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.179 T 28-03-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 AM348_RS18140 3b7d71472451a01e821e859de9788671 211 SMART SM00478 38 185 1.6E-52 T 28-03-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 AM348_RS14350 0ae3d9ddabb236bfb8ec96934bf92afa 306 Pfam PF00892 EamA-like transporter family 150 284 5.3E-16 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS14350 0ae3d9ddabb236bfb8ec96934bf92afa 306 Pfam PF00892 EamA-like transporter family 13 140 4.7E-22 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS14350 0ae3d9ddabb236bfb8ec96934bf92afa 306 SUPERFAMILY SSF103481 43 144 1.06E-10 T 28-03-2018 AM348_RS14350 0ae3d9ddabb236bfb8ec96934bf92afa 306 SUPERFAMILY SSF103481 187 287 3.66E-11 T 28-03-2018 AM348_RS07735 a877eedcc07c94d04ffcff636eb3b293 489 Pfam PF10150 Ribonuclease E/G family 124 393 2.5E-101 T 28-03-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 AM348_RS07735 a877eedcc07c94d04ffcff636eb3b293 489 SUPERFAMILY SSF50249 39 128 2.62E-19 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS07735 a877eedcc07c94d04ffcff636eb3b293 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 2.3E-178 T 28-03-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 AM348_RS07735 a877eedcc07c94d04ffcff636eb3b293 489 Gene3D G3DSA:2.40.50.140 32 127 5.7E-31 T 28-03-2018 AM348_RS07735 a877eedcc07c94d04ffcff636eb3b293 489 Pfam PF00575 S1 RNA binding domain 38 109 1.5E-6 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS07735 a877eedcc07c94d04ffcff636eb3b293 489 SMART SM00316 37 122 1.2E-9 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS11875 22e1aa3040d021795a2aee90ab7e9c9c 395 Pfam PF00465 Iron-containing alcohol dehydrogenase 27 387 2.6E-112 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS11875 22e1aa3040d021795a2aee90ab7e9c9c 395 SUPERFAMILY SSF56796 22 393 4.97E-113 T 28-03-2018 AM348_RS11875 22e1aa3040d021795a2aee90ab7e9c9c 395 Gene3D G3DSA:1.20.1090.10 203 395 6.3E-58 T 28-03-2018 AM348_RS11875 22e1aa3040d021795a2aee90ab7e9c9c 395 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 191 219 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS11875 22e1aa3040d021795a2aee90ab7e9c9c 395 Gene3D G3DSA:3.40.50.1970 7 202 1.1E-40 T 28-03-2018 AM348_RS11875 22e1aa3040d021795a2aee90ab7e9c9c 395 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 278 298 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 Hamap MF_01060 Periplasmic trehalase [treA]. 2 539 83.235 T 28-03-2018 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 196 214 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 444 460 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 305 322 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 380 396 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 271 288 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 521 534 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 337 354 2.2E-49 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 ProSitePatterns PS00928 Trehalase signature 2. 451 460 - T 28-03-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 ProSitePatterns PS00927 Trehalase signature 1. 154 167 - T 28-03-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 Pfam PF01204 Trehalase 60 537 2.2E-171 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 Gene3D G3DSA:1.50.10.10 41 547 1.1E-153 T 28-03-2018 AM348_RS15605 036e286a509e00169fbfc7fd45ac838a 570 SUPERFAMILY SSF48208 44 543 4.56E-171 T 28-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM348_RS01410 6dab8a53a9cf3a7d6978d7994eab8e31 786 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 14 765 21.416 T 28-03-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 AM348_RS01410 6dab8a53a9cf3a7d6978d7994eab8e31 786 Pfam PF03968 OstA-like protein 53 194 1.6E-28 T 28-03-2018 IPR005653 Organic solvent tolerance-like, N-terminal AM348_RS01410 6dab8a53a9cf3a7d6978d7994eab8e31 786 Pfam PF04453 Organic solvent tolerance protein 309 699 9.7E-110 T 28-03-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 AM348_RS01410 6dab8a53a9cf3a7d6978d7994eab8e31 786 Gene3D G3DSA:2.60.450.10 44 208 2.0E-16 T 28-03-2018 AM348_RS02105 7b013ff4e9a196b8e5c4536aff9004b9 231 Gene3D G3DSA:3.40.50.10420 40 229 6.0E-40 T 28-03-2018 AM348_RS02105 7b013ff4e9a196b8e5c4536aff9004b9 231 SUPERFAMILY SSF100950 42 229 3.98E-37 T 28-03-2018 AM348_RS02105 7b013ff4e9a196b8e5c4536aff9004b9 231 Pfam PF02589 LUD domain 65 228 7.8E-29 T 28-03-2018 IPR003741 LUD domain AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 SMART SM00354 3 73 7.3E-35 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 Gene3D G3DSA:3.40.50.2300 56 178 5.9E-25 T 28-03-2018 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 Gene3D G3DSA:1.10.260.40 4 55 1.1E-21 T 28-03-2018 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 Gene3D G3DSA:3.40.50.2300 179 330 4.4E-41 T 28-03-2018 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 SUPERFAMILY SSF47413 2 61 2.2E-18 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 28-03-2018 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 9.3E-22 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 Pfam PF13377 Periplasmic binding protein-like domain 171 329 1.6E-33 T 28-03-2018 AM348_RS00085 4bb62f3cf50f2629882c1105027dfc83 360 SUPERFAMILY SSF53822 61 326 1.11E-56 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS03355 02bdc382cedb6a3aaea593857355b5b3 227 SUPERFAMILY SSF51182 98 208 2.37E-6 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS03355 02bdc382cedb6a3aaea593857355b5b3 227 Gene3D G3DSA:2.60.120.10 14 217 6.9E-7 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS03355 02bdc382cedb6a3aaea593857355b5b3 227 Pfam PF07385 D-lyxose isomerase 1 224 2.8E-98 T 28-03-2018 IPR010864 D-lyxose isomerase KEGG: 00040+5.3.1.15 AM348_RS02100 d165ca5101103cbaed5b1256e5bd0cd4 447 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 446 3.3E-180 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS02100 d165ca5101103cbaed5b1256e5bd0cd4 447 PIRSF PIRSF002746 1 447 7.1E-147 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS02100 d165ca5101103cbaed5b1256e5bd0cd4 447 Pfam PF02447 GntP family permease 5 446 1.3E-166 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS13855 9206293c5397d5cea800feac7c1a4aac 327 Gene3D G3DSA:3.30.1890.10 111 175 1.7E-7 T 28-03-2018 AM348_RS13855 9206293c5397d5cea800feac7c1a4aac 327 Gene3D G3DSA:3.30.1890.10 43 110 9.2E-12 T 28-03-2018 AM348_RS13855 9206293c5397d5cea800feac7c1a4aac 327 Pfam PF02706 Chain length determinant protein 16 122 5.2E-21 T 28-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM348_RS13855 9206293c5397d5cea800feac7c1a4aac 327 Gene3D G3DSA:1.10.287.210 176 269 5.1E-25 T 28-03-2018 AM348_RS13855 9206293c5397d5cea800feac7c1a4aac 327 SUPERFAMILY SSF160355 54 292 1.31E-66 T 28-03-2018 AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 PIRSF PIRSF036407 1 346 3.9E-117 T 28-03-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 Gene3D G3DSA:3.30.1330.10 1 162 4.1E-37 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 SUPERFAMILY SSF56042 164 340 1.5E-50 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 3.5E-134 T 28-03-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 SUPERFAMILY SSF55326 7 161 3.74E-40 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 Gene3D G3DSA:3.90.650.10 164 347 3.3E-43 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 344 2.0E-30 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 1.5E-18 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS19105 62d368ae5f6ef7b9ed9c19b7c71ae9a0 347 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 45.103 T 28-03-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 AM348_RS09245 dd46ed8dae6e302d45a55bbe1fd80b90 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 3 138 26.193 T 28-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AM348_RS09245 dd46ed8dae6e302d45a55bbe1fd80b90 138 Pfam PF03652 Holliday junction resolvase 4 135 3.5E-43 T 28-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AM348_RS09245 dd46ed8dae6e302d45a55bbe1fd80b90 138 SUPERFAMILY SSF53098 3 136 5.46E-43 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS09245 dd46ed8dae6e302d45a55bbe1fd80b90 138 Gene3D G3DSA:3.30.420.140 1 138 1.5E-43 T 28-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AM348_RS09245 dd46ed8dae6e302d45a55bbe1fd80b90 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 6 135 2.9E-61 T 28-03-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 AM348_RS09245 dd46ed8dae6e302d45a55bbe1fd80b90 138 SMART SM00732 3 103 8.1E-41 T 28-03-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 AM348_RS08695 57d9b9cfa981a0d7d3c404dc06f432ff 122 TIGRFAM TIGR00526 folB_dom: FolB domain 1 118 4.6E-41 T 28-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS08695 57d9b9cfa981a0d7d3c404dc06f432ff 122 Pfam PF02152 Dihydroneopterin aldolase 4 113 8.3E-32 T 28-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS08695 57d9b9cfa981a0d7d3c404dc06f432ff 122 SMART SM00905 4 114 1.5E-46 T 28-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS08695 57d9b9cfa981a0d7d3c404dc06f432ff 122 Gene3D G3DSA:3.30.1130.10 1 122 1.7E-35 T 28-03-2018 AM348_RS08695 57d9b9cfa981a0d7d3c404dc06f432ff 122 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 1.6E-27 T 28-03-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS08695 57d9b9cfa981a0d7d3c404dc06f432ff 122 SUPERFAMILY SSF55620 1 115 4.39E-36 T 28-03-2018 AM348_RS22045 fffcbaee4dc1a84b2ad86be3e8fbc746 302 SMART SM00062 41 273 4.1E-69 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS22045 fffcbaee4dc1a84b2ad86be3e8fbc746 302 Gene3D G3DSA:3.40.190.10 2 169 1.3E-31 T 28-03-2018 AM348_RS22045 fffcbaee4dc1a84b2ad86be3e8fbc746 302 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 271 2.0E-47 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS22045 fffcbaee4dc1a84b2ad86be3e8fbc746 302 SUPERFAMILY SSF53850 8 274 1.82E-63 T 28-03-2018 AM348_RS22045 fffcbaee4dc1a84b2ad86be3e8fbc746 302 Gene3D G3DSA:3.40.190.10 170 302 2.0E-19 T 28-03-2018 AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 Pfam PF00258 Flavodoxin 5 160 8.0E-27 T 28-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 28-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 SUPERFAMILY SSF52218 1 168 8.54E-46 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 PIRSF PIRSF038996 1 171 5.1E-54 T 28-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 TIGRFAM TIGR01752 flav_long: flavodoxin 3 168 1.8E-68 T 28-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 Gene3D G3DSA:3.40.50.360 2 76 7.6E-15 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS09500 78d6d74f4e30dbec1b3ac921b3c07382 173 Gene3D G3DSA:3.40.50.360 77 173 2.9E-16 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.3E-34 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.3E-34 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.3E-34 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.3E-34 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.3E-34 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.3E-34 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 Gene3D G3DSA:3.40.50.720 1 45 1.8E-6 T 28-03-2018 AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 Gene3D G3DSA:3.40.50.720 46 258 1.2E-53 T 28-03-2018 AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 252 2.3E-54 T 28-03-2018 AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 6.5E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 6.5E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 6.5E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS05645 5a913455350f4457c606d8c13d206aa9 258 SUPERFAMILY SSF51735 7 254 8.21E-68 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 Gene3D G3DSA:3.40.228.10 549 628 5.4E-14 T 28-03-2018 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 SUPERFAMILY SSF53706 1 639 2.09E-230 T 28-03-2018 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 Gene3D G3DSA:2.40.40.20 629 804 4.9E-40 T 28-03-2018 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 Pfam PF00384 Molybdopterin oxidoreductase 2 377 2.7E-21 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 803 0.0 T 28-03-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 716 743 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 Pfam PF01568 Molydopterin dinucleotide binding domain 682 797 2.2E-17 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 Gene3D G3DSA:3.40.228.10 1 268 1.1E-69 T 28-03-2018 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 Gene3D G3DSA:3.40.50.740 269 449 6.8E-26 T 28-03-2018 AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 SUPERFAMILY SSF50692 618 648 5.39E-43 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS04510 9927e344f817a9e5da21919bc4db3be3 804 SUPERFAMILY SSF50692 675 804 5.39E-43 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 PIRSF PIRSF037167 1 307 8.8E-151 T 28-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 Pfam PF05175 Methyltransferase small domain 132 215 6.5E-16 T 28-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 2.9E-139 T 28-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 SUPERFAMILY SSF53335 15 293 1.4E-51 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 54.304 T 28-03-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 Gene3D G3DSA:1.10.8.10 14 101 1.3E-12 T 28-03-2018 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 Gene3D G3DSA:3.40.50.150 102 275 2.4E-34 T 28-03-2018 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS12370 ab5285accc2bd954a578d4a354fdc0b9 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 305 5.3E-108 T 28-03-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 Gene3D G3DSA:3.40.50.2000 16 218 2.4E-13 T 28-03-2018 AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 SUPERFAMILY SSF53756 354 403 1.05E-41 T 28-03-2018 AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 SUPERFAMILY SSF53756 2 322 1.05E-41 T 28-03-2018 AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 Pfam PF00534 Glycosyl transferases group 1 221 389 1.8E-19 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 TIGRFAM TIGR04007 wcaI: colanic acid biosynthesis glycosyltransferase WcaI 1 407 5.9E-260 T 28-03-2018 IPR023910 Colanic acid biosynthesis, glycosyl transferase, WcaI AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 Pfam PF13579 Glycosyl transferase 4-like domain 15 204 1.1E-24 T 28-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM348_RS13745 760cb88bef68e316f2311ddff0749912 408 Gene3D G3DSA:3.40.50.2000 219 392 5.1E-21 T 28-03-2018 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 Gene3D G3DSA:1.10.10.10 5 93 1.9E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.3E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 Pfam PF03466 LysR substrate binding domain 88 289 2.7E-23 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 Gene3D G3DSA:3.40.190.10 94 176 6.4E-8 T 28-03-2018 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 SUPERFAMILY SSF53850 90 290 7.06E-23 T 28-03-2018 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 Gene3D G3DSA:3.40.190.10 177 260 3.2E-9 T 28-03-2018 AM348_RS00160 17aaf0c54f7495b908a32a3fe0b02b11 301 SUPERFAMILY SSF46785 3 85 1.09E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13520 ed4f2c7ee6affe9b47ca5d0d9ff0ff9d 333 Gene3D G3DSA:3.40.640.10 17 247 1.8E-45 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS13520 ed4f2c7ee6affe9b47ca5d0d9ff0ff9d 333 Gene3D G3DSA:3.90.1150.10 248 333 1.4E-17 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS13520 ed4f2c7ee6affe9b47ca5d0d9ff0ff9d 333 PIRSF PIRSF017617 1 333 1.4E-127 T 28-03-2018 IPR023603 Threonine aldolase AM348_RS13520 ed4f2c7ee6affe9b47ca5d0d9ff0ff9d 333 SUPERFAMILY SSF53383 1 331 3.63E-112 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS13520 ed4f2c7ee6affe9b47ca5d0d9ff0ff9d 333 Pfam PF01212 Beta-eliminating lyase 3 282 2.2E-94 T 28-03-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 AM348_RS04795 a74573b57ba49e0ce7b1472380da62ba 84 Pfam PF02416 mttA/Hcf106 family 4 55 1.7E-14 T 28-03-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 AM348_RS04795 a74573b57ba49e0ce7b1472380da62ba 84 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 84 24.241 T 28-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM348_RS04795 a74573b57ba49e0ce7b1472380da62ba 84 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 2.2E-20 T 28-03-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 SMART SM00382 30 218 2.3E-17 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 SUPERFAMILY SSF52540 1 240 9.98E-84 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 SMART SM00930 262 337 8.8E-22 T 28-03-2018 IPR018449 NIL domain AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 Gene3D G3DSA:3.30.70.260 256 339 5.6E-20 T 28-03-2018 AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 SUPERFAMILY SSF55021 262 339 2.17E-18 T 28-03-2018 AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 Gene3D G3DSA:3.40.50.300 1 255 2.8E-79 T 28-03-2018 AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 Pfam PF00005 ABC transporter 21 169 1.2E-37 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS18620 f5303af54bb2504c2a84b80e21b5236d 340 Pfam PF09383 NIL domain 265 336 2.1E-16 T 28-03-2018 IPR018449 NIL domain AM348_RS09235 d8925daa8fb66b334792cf6b7b97ecd6 234 PIRSF PIRSF004848 1 234 6.5E-72 T 28-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein AM348_RS09235 d8925daa8fb66b334792cf6b7b97ecd6 234 Pfam PF01168 Alanine racemase, N-terminal domain 7 229 9.6E-28 T 28-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS09235 d8925daa8fb66b334792cf6b7b97ecd6 234 SUPERFAMILY SSF51419 1 227 5.63E-78 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS09235 d8925daa8fb66b334792cf6b7b97ecd6 234 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 229 1.5E-98 T 28-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein AM348_RS09235 d8925daa8fb66b334792cf6b7b97ecd6 234 Gene3D G3DSA:3.20.20.10 1 234 6.2E-67 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS09235 d8925daa8fb66b334792cf6b7b97ecd6 234 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 79 93 - T 28-03-2018 IPR011078 Pyridoxal phosphate homeostasis protein AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 Gene3D G3DSA:3.30.9.10 87 201 2.7E-17 T 28-03-2018 AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 Gene3D G3DSA:3.30.9.10 203 352 2.5E-19 T 28-03-2018 AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 SUPERFAMILY SSF51905 328 345 4.23E-50 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 SUPERFAMILY SSF51905 1 284 4.23E-50 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 Pfam PF01266 FAD dependent oxidoreductase 3 390 1.4E-69 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 Gene3D G3DSA:3.50.50.60 2 84 0.027 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10710 ab0777c13dad9f3bf2b972b772964d58 422 Hamap MF_00990 L-2-hydroxyglutarate oxidase LhgO [lhgO]. 1 422 87.968 T 28-03-2018 IPR030862 L-2-hydroxyglutarate oxidase LhgO GO:0034419 KEGG: 00630+1.1.3.15|MetaCyc: PWY-181 AM348_RS12915 f3962f19467a6ac39aaa59f04e162242 200 PIRSF PIRSF000013 1 200 1.1E-106 T 28-03-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 AM348_RS12915 f3962f19467a6ac39aaa59f04e162242 200 SUPERFAMILY SSF48695 17 196 3.03E-64 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS12915 f3962f19467a6ac39aaa59f04e162242 200 Gene3D G3DSA:1.10.468.10 42 198 6.5E-30 T 28-03-2018 AM348_RS12915 f3962f19467a6ac39aaa59f04e162242 200 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 11 194 6.3E-105 T 28-03-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 AM348_RS12915 f3962f19467a6ac39aaa59f04e162242 200 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 22 193 5.4E-78 T 28-03-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AM348_RS15300 f8116eb7e6ef2bfa35628e7b7b656daf 293 Pfam PF01435 Peptidase family M48 73 288 4.3E-39 T 28-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM348_RS15300 f8116eb7e6ef2bfa35628e7b7b656daf 293 Gene3D G3DSA:3.30.2010.10 64 157 1.0E-20 T 28-03-2018 AM348_RS15300 f8116eb7e6ef2bfa35628e7b7b656daf 293 Hamap MF_00188 Protease HtpX [htpX]. 1 289 27.012 T 28-03-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 AM348_RS02210 1975e7609e27ae1e67607aa67bae0f84 300 SUPERFAMILY SSF52980 1 287 7.51E-75 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS02210 1975e7609e27ae1e67607aa67bae0f84 300 Pfam PF14562 Restriction endonuclease BglI 15 291 1.6E-25 T 28-03-2018 IPR011543 Restriction endonuclease, type II, BglI AM348_RS02210 1975e7609e27ae1e67607aa67bae0f84 300 Gene3D G3DSA:3.40.600.20 1 295 2.0E-96 T 28-03-2018 AM348_RS12345 f36a91f58d09e45840f33fc69f0b619d 94 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 1 94 3.2E-44 T 28-03-2018 IPR005272 Conserved hypothetical protein CHP00743 AM348_RS12345 f36a91f58d09e45840f33fc69f0b619d 94 Gene3D G3DSA:3.30.70.860 15 94 6.0E-33 T 28-03-2018 IPR035571 UPF0234/UPF0381 domain AM348_RS12345 f36a91f58d09e45840f33fc69f0b619d 94 Pfam PF04175 Protein of unknown function (DUF406) 3 94 2.5E-38 T 28-03-2018 IPR005272 Conserved hypothetical protein CHP00743 AM348_RS18085 79804eb64d5da3834362c702eb486f7d 333 Pfam PF00962 Adenosine/AMP deaminase 6 328 7.2E-102 T 28-03-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 AM348_RS18085 79804eb64d5da3834362c702eb486f7d 333 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 28-03-2018 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 AM348_RS18085 79804eb64d5da3834362c702eb486f7d 333 SUPERFAMILY SSF51556 5 326 2.87E-78 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS18085 79804eb64d5da3834362c702eb486f7d 333 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 1.0E-108 T 28-03-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 AM348_RS18085 79804eb64d5da3834362c702eb486f7d 333 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.685 T 28-03-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 AM348_RS18085 79804eb64d5da3834362c702eb486f7d 333 Gene3D G3DSA:3.20.20.140 4 333 8.9E-75 T 28-03-2018 AM348_RS17475 8c9f09234c91986db618dfcd7539c1c2 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 292 6.9E-29 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17475 8c9f09234c91986db618dfcd7539c1c2 298 SUPERFAMILY SSF161098 89 275 1.31E-24 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17475 8c9f09234c91986db618dfcd7539c1c2 298 Gene3D G3DSA:1.10.3720.10 11 283 1.1E-40 T 28-03-2018 AM348_RS17475 8c9f09234c91986db618dfcd7539c1c2 298 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 20 70 1.3E-7 T 28-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:3.40.50.1820 1054 1293 2.8E-18 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 SUPERFAMILY SSF47336 970 1043 2.09E-12 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Pfam PF00550 Phosphopantetheine attachment site 980 1042 4.0E-10 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:3.30.559.10 1 208 4.7E-19 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:2.30.38.10 776 855 6.8E-22 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 SMART SM00824 Thioesterase 1070 1257 1.6E-4 T 28-03-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:3.30.300.30 858 984 1.0E-29 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 482 887 5.6E-126 T 28-03-2018 IPR010071 Amino acid adenylation domain AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:3.40.50.980 606 767 2.9E-40 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 SUPERFAMILY SSF52777 190 426 5.45E-33 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:3.40.50.980 453 605 4.2E-42 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 SUPERFAMILY SSF52777 9 183 7.67E-32 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Gene3D G3DSA:1.10.1200.10 985 1053 2.2E-15 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 SUPERFAMILY SSF56801 424 989 3.27E-148 T 28-03-2018 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Pfam PF00975 Thioesterase domain 1068 1282 9.7E-45 T 28-03-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Pfam PF00668 Condensation domain 3 442 6.1E-95 T 28-03-2018 IPR001242 Condensation domain AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Pfam PF00501 AMP-binding enzyme 463 863 3.0E-97 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1001 1016 - T 28-03-2018 IPR006162 Phosphopantetheine attachment site AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 SUPERFAMILY SSF53474 1050 1291 3.18E-45 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 ProSitePatterns PS00455 Putative AMP-binding domain signature. 600 611 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS22385 141e72c88dbdf6ecc1a05fb2cd8aca31 1296 Pfam PF13193 AMP-binding enzyme C-terminal domain 885 952 7.8E-6 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 320 2.0E-21 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 SUPERFAMILY SSF52540 5 253 1.41E-59 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 Gene3D G3DSA:3.40.50.300 2 328 1.5E-71 T 28-03-2018 AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 Pfam PF00005 ABC transporter 25 184 2.8E-25 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 1.0E-15 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS17470 04739042e8c6a6a83f496f2b72084e0e 328 SMART SM00382 34 234 1.1E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 SUPERFAMILY SSF52518 58 469 5.27E-143 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 28-03-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 SUPERFAMILY SSF52518 474 701 2.0E-98 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 106 294 2.3E-9 T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 Gene3D G3DSA:3.40.50.920 707 887 9.3E-42 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 Gene3D G3DSA:3.40.50.970 57 471 3.2E-83 T 28-03-2018 AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 Gene3D G3DSA:3.40.50.970 472 706 2.1E-66 T 28-03-2018 AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 PIRSF PIRSF000156 1 887 0.0 T 28-03-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 AM348_RS01090 f946da99170d6a9ba8c959aff0942816 887 SUPERFAMILY SSF52922 702 885 4.54E-63 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS13185 e008389a372899223e6baa34a6de24c3 278 Gene3D G3DSA:3.40.50.1820 1 277 2.8E-43 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS13185 e008389a372899223e6baa34a6de24c3 278 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 275 3.3E-118 T 28-03-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 AM348_RS13185 e008389a372899223e6baa34a6de24c3 278 SUPERFAMILY SSF53474 1 276 1.86E-88 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS13185 e008389a372899223e6baa34a6de24c3 278 Pfam PF00756 Putative esterase 21 271 8.0E-73 T 28-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 28-03-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 Gene3D G3DSA:2.160.10.10 335 419 5.4E-7 T 28-03-2018 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 52.857 T 28-03-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 SUPERFAMILY SSF53448 378 393 4.22E-78 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 SUPERFAMILY SSF53448 20 294 4.22E-78 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 7.8E-157 T 28-03-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 28-03-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 SUPERFAMILY SSF51161 312 411 9.72E-19 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 Pfam PF00483 Nucleotidyl transferase 22 291 1.4E-70 T 28-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 Gene3D G3DSA:3.90.550.10 20 334 9.0E-67 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS06905 6774259ee95199a2a4ff73cdcf730fd8 431 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 28-03-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 PIRSF PIRSF000727 12 810 6.9E-295 T 28-03-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 SUPERFAMILY SSF53633 12 299 1.96E-54 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 SUPERFAMILY SSF51735 457 630 1.36E-33 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 Pfam PF00742 Homoserine dehydrogenase 608 803 3.2E-44 T 28-03-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 Gene3D G3DSA:3.30.360.10 630 787 9.4E-51 T 28-03-2018 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 Gene3D G3DSA:3.40.50.720 455 629 5.2E-25 T 28-03-2018 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 ProSitePatterns PS00324 Aspartokinase signature. 14 22 - T 28-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 SUPERFAMILY SSF55347 608 791 2.81E-47 T 28-03-2018 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 465 600 1.1E-24 T 28-03-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 Pfam PF00696 Amino acid kinase family 12 284 1.7E-42 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 Gene3D G3DSA:3.40.1160.10 9 323 5.6E-48 T 28-03-2018 AM348_RS04230 6d42649145465e31659a341fb82c64a7 810 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 654 676 - T 28-03-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 SUPERFAMILY SSF48179 169 289 9.86E-38 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 SUPERFAMILY SSF51735 1 167 4.33E-58 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 Gene3D G3DSA:3.40.50.720 1 167 1.7E-24 T 28-03-2018 AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 169 289 3.3E-37 T 28-03-2018 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 Gene3D G3DSA:1.10.1040.10 168 301 2.7E-38 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 291 9.4E-75 T 28-03-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 AM348_RS23265 19e728a3e9f94d8e9e958c29c30aa5b9 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 143 1.0E-24 T 28-03-2018 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|MetaCyc: PWY-7862 AM348_RS08775 e55e5726ff6ac597dee2adb1053b89f9 257 Pfam PF02535 ZIP Zinc transporter 103 246 4.9E-24 T 28-03-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM348_RS08775 e55e5726ff6ac597dee2adb1053b89f9 257 Hamap MF_00548 Zinc transporter ZupT [zupT]. 1 252 30.272 T 28-03-2018 IPR023498 Zinc transporter ZupT AM348_RS01215 55b05678def8dd822e08dd94bbce376b 414 Pfam PF01098 Cell cycle protein 47 402 2.5E-129 T 28-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 AM348_RS01215 55b05678def8dd822e08dd94bbce376b 414 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 359 383 - T 28-03-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 AM348_RS01215 55b05678def8dd822e08dd94bbce376b 414 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 45 400 1.9E-134 T 28-03-2018 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 AM348_RS01215 55b05678def8dd822e08dd94bbce376b 414 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 43 410 42.067 T 28-03-2018 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 5.9E-35 T 28-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 325 3.6E-134 T 28-03-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 4.3E-32 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 266 281 4.3E-32 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 4.3E-32 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 4.3E-32 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 4.3E-32 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 28-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 313 7.6E-60 T 28-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 SUPERFAMILY SSF55347 150 314 4.17E-61 T 28-03-2018 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 PIRSF PIRSF000149 1 333 3.0E-119 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 SMART SM00846 2 150 3.5E-80 T 28-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 Gene3D G3DSA:3.30.360.10 160 315 4.7E-59 T 28-03-2018 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 Gene3D G3DSA:3.40.50.720 1 159 2.8E-71 T 28-03-2018 AM348_RS16870 4531fed5b7ee7aeb5705bd2540714b70 333 SUPERFAMILY SSF51735 3 166 3.38E-59 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 Pfam PF13377 Periplasmic binding protein-like domain 167 326 2.1E-32 T 28-03-2018 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 SUPERFAMILY SSF47413 3 51 9.38E-12 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 6.2E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 6.2E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 1.0E-17 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 SUPERFAMILY SSF53822 76 309 1.63E-42 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 Gene3D G3DSA:3.40.50.2300 175 309 1.6E-31 T 28-03-2018 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 SMART SM00354 1 74 2.3E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 Gene3D G3DSA:3.40.50.2300 57 174 6.3E-10 T 28-03-2018 AM348_RS08495 5d5493c1b1499c324cba6c95923ed707 327 Gene3D G3DSA:1.10.260.40 1 56 4.1E-15 T 28-03-2018 AM348_RS01000 20b829925c6b8acfdd5f6edc5c825a61 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 28-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS01000 20b829925c6b8acfdd5f6edc5c825a61 220 Pfam PF00484 Carbonic anhydrase 38 187 3.0E-51 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS01000 20b829925c6b8acfdd5f6edc5c825a61 220 SMART SM00947 30 192 7.0E-69 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS01000 20b829925c6b8acfdd5f6edc5c825a61 220 Gene3D G3DSA:3.40.1050.10 1 220 1.1E-73 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS01000 20b829925c6b8acfdd5f6edc5c825a61 220 SUPERFAMILY SSF53056 2 213 1.01E-73 T 28-03-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS01000 20b829925c6b8acfdd5f6edc5c825a61 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 28-03-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 Gene3D G3DSA:1.10.287.470 128 190 7.4E-13 T 28-03-2018 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 1 413 53.436 T 28-03-2018 IPR022824 Multidrug resistance protein MdtA AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 SUPERFAMILY SSF111369 79 313 1.96E-54 T 28-03-2018 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 62 390 2.4E-78 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 Gene3D G3DSA:2.40.50.100 191 376 3.2E-5 T 28-03-2018 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 Pfam PF13437 HlyD family secretion protein 198 301 3.4E-8 T 28-03-2018 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 Pfam PF13533 Biotin-lipoyl like 88 135 1.9E-14 T 28-03-2018 AM348_RS13640 c2031349730bd1f5f0bdfd0879ac3e81 415 Gene3D G3DSA:2.40.50.100 58 119 1.0E-7 T 28-03-2018 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 Pfam PF01037 Lrp/AsnC ligand binding domain 102 176 1.2E-21 T 28-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 SMART SM00344 36 145 1.5E-37 T 28-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 36 52 4.2E-10 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 52 63 4.2E-10 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 63 82 4.2E-10 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 SUPERFAMILY SSF46785 35 95 1.35E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 Pfam PF13404 AsnC-type helix-turn-helix domain 36 77 1.1E-15 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 SUPERFAMILY SSF54909 96 185 6.57E-21 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 Gene3D G3DSA:1.10.10.10 37 88 4.7E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 Gene3D G3DSA:3.30.70.920 89 182 7.9E-28 T 28-03-2018 AM348_RS23145 b3ad9fcaee9c8e9f4ee39480799e038c 186 ProSitePatterns PS00519 AsnC-type HTH domain signature. 54 80 - T 28-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM348_RS20755 3b0a51391f506c720241cb4d26a1acea 227 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 4.7E-96 T 28-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AM348_RS20755 3b0a51391f506c720241cb4d26a1acea 227 SUPERFAMILY SSF52540 6 224 2.98E-49 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20755 3b0a51391f506c720241cb4d26a1acea 227 Pfam PF02224 Cytidylate kinase 8 221 1.7E-84 T 28-03-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AM348_RS20755 3b0a51391f506c720241cb4d26a1acea 227 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.471 T 28-03-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 AM348_RS20755 3b0a51391f506c720241cb4d26a1acea 227 Gene3D G3DSA:3.40.50.300 5 224 1.2E-52 T 28-03-2018 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 Gene3D G3DSA:1.10.287.950 210 315 6.8E-9 T 28-03-2018 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 Gene3D G3DSA:1.10.287.950 316 513 1.6E-38 T 28-03-2018 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 2.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 2.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 2.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 2.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 SUPERFAMILY SSF58104 236 511 7.98E-62 T 28-03-2018 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 Gene3D G3DSA:3.40.50.10600 8 128 7.6E-25 T 28-03-2018 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 114 1.2E-10 T 28-03-2018 IPR000014 PAS domain AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 SUPERFAMILY SSF55785 22 114 1.61E-22 T 28-03-2018 IPR000014 PAS domain AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 SMART SM00283 263 510 1.9E-70 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 476 1.8E-45 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS17225 d349ead783ca2ed7e4d9ada060020e8b 513 Pfam PF08447 PAS fold 31 111 1.0E-11 T 28-03-2018 IPR013655 PAS fold-3 GO:0005515 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 335 352 8.5E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 8.5E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 8.5E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 8.5E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 241 253 8.5E-18 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 Gene3D G3DSA:2.40.160.10 10 384 1.3E-54 T 28-03-2018 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 SUPERFAMILY SSF56935 22 384 1.86E-81 T 28-03-2018 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 Pfam PF00267 Gram-negative porin 27 384 1.8E-144 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 4.0E-74 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00183 E.coli/Salmonella-type porin signature 247 264 4.0E-74 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 4.0E-74 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 4.0E-74 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00183 E.coli/Salmonella-type porin signature 281 300 4.0E-74 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS16790 642ab473a7884b462ff74fb9504edb8d 384 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 4.0E-74 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 SUPERFAMILY SSF46609 1 90 6.02E-37 T 28-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 SUPERFAMILY SSF54719 95 204 7.2E-45 T 28-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.8E-27 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 4.8E-27 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.8E-27 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 4.8E-27 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 PRINTS PR01703 Manganese superoxide dismutase signature 166 178 4.8E-27 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 201 3.0E-40 T 28-03-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 Gene3D G3DSA:1.10.287.990 20 90 4.8E-31 T 28-03-2018 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 168 175 - T 28-03-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 1.7E-33 T 28-03-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS04420 8bababb23653f4d69b11f2cb84824034 206 PIRSF PIRSF000349 1 206 6.3E-80 T 28-03-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803 AM348_RS02850 65f2d6e027901cf4a6c98f4f3fdd6efb 141 SUPERFAMILY SSF46785 2 131 8.81E-34 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02850 65f2d6e027901cf4a6c98f4f3fdd6efb 141 Gene3D G3DSA:1.10.10.10 1 136 1.2E-28 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02850 65f2d6e027901cf4a6c98f4f3fdd6efb 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 45.05 T 28-03-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 AM348_RS02850 65f2d6e027901cf4a6c98f4f3fdd6efb 141 Pfam PF02082 Transcriptional regulator 2 82 2.9E-24 T 28-03-2018 IPR000944 Transcription regulator Rrf2-type AM348_RS02850 65f2d6e027901cf4a6c98f4f3fdd6efb 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 128 4.2E-36 T 28-03-2018 IPR000944 Transcription regulator Rrf2-type AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 47.253 T 28-03-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 SUPERFAMILY SSF51735 91 256 2.78E-32 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 28-03-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 28-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 2.3E-27 T 28-03-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 Gene3D G3DSA:3.40.50.720 1 104 3.0E-21 T 28-03-2018 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 Gene3D G3DSA:3.40.50.720 105 257 5.9E-29 T 28-03-2018 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 SUPERFAMILY SSF52283 4 109 2.34E-17 T 28-03-2018 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 281 1.8E-17 T 28-03-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 AM348_RS12420 49564cd380de7bec481a06f0f750a7ab 378 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 246 8.9E-30 T 28-03-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 AM348_RS21475 976632ef6e99beb693ccbaca0ea83e0f 346 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 171 180 - T 28-03-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AM348_RS21475 976632ef6e99beb693ccbaca0ea83e0f 346 SUPERFAMILY SSF74650 3 343 1.57E-106 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS21475 976632ef6e99beb693ccbaca0ea83e0f 346 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 12 343 7.8E-142 T 28-03-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AM348_RS21475 976632ef6e99beb693ccbaca0ea83e0f 346 Pfam PF01263 Aldose 1-epimerase 17 342 1.6E-87 T 28-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AM348_RS21475 976632ef6e99beb693ccbaca0ea83e0f 346 Gene3D G3DSA:2.70.98.10 6 344 6.7E-105 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS21475 976632ef6e99beb693ccbaca0ea83e0f 346 PIRSF PIRSF005096 2 345 4.9E-122 T 28-03-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 AM348_RS04535 27a0ef130eac3b779f7c626bde948ec2 103 PIRSF PIRSF039032 1 103 3.2E-37 T 28-03-2018 IPR009387 Toxin HigB-2 AM348_RS05305 5f993dd4c74cc43caf1bc9e1e99df6e6 346 SUPERFAMILY SSF53850 28 338 4.45E-97 T 28-03-2018 AM348_RS05305 5f993dd4c74cc43caf1bc9e1e99df6e6 346 Gene3D G3DSA:3.40.190.10 26 160 6.5E-31 T 28-03-2018 AM348_RS05305 5f993dd4c74cc43caf1bc9e1e99df6e6 346 Gene3D G3DSA:3.40.190.10 161 337 4.1E-26 T 28-03-2018 AM348_RS05305 5f993dd4c74cc43caf1bc9e1e99df6e6 346 Pfam PF12849 PBP superfamily domain 25 307 1.0E-62 T 28-03-2018 IPR024370 PBP domain AM348_RS05305 5f993dd4c74cc43caf1bc9e1e99df6e6 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 7.1E-128 T 28-03-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AM348_RS05305 5f993dd4c74cc43caf1bc9e1e99df6e6 346 PIRSF PIRSF002756 1 338 3.7E-105 T 28-03-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 AM348_RS12360 b99b0cd1ea593c569dacb7eb19645f55 161 Gene3D G3DSA:3.40.50.1240 1 161 9.5E-20 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS12360 b99b0cd1ea593c569dacb7eb19645f55 161 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 152 1.2E-58 T 28-03-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 AM348_RS12360 b99b0cd1ea593c569dacb7eb19645f55 161 SUPERFAMILY SSF53254 1 144 1.28E-17 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS12360 b99b0cd1ea593c569dacb7eb19645f55 161 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 71 1.6E-6 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS12140 5cc26f99a6db987e0bada0df759410ed 108 Pfam PF10697 Protein of unknown function (DUF2502) 23 106 9.2E-20 T 28-03-2018 IPR019638 Protein of unknown function DUF2502 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Hamap MF_01961 Catalase-peroxidase [katG]. 11 726 39.272 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 SUPERFAMILY SSF48113 29 429 3.54E-140 T 28-03-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 ProSitePatterns PS00436 Peroxidases active site signature. 97 108 - T 28-03-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Pfam PF00141 Peroxidase 403 699 1.3E-34 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Pfam PF00141 Peroxidase 91 396 9.2E-49 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Gene3D G3DSA:1.10.520.10 63 216 7.3E-35 T 28-03-2018 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 SUPERFAMILY SSF48113 435 725 4.72E-103 T 28-03-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 18 726 0.0 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Gene3D G3DSA:1.10.420.10 231 397 2.5E-39 T 28-03-2018 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Gene3D G3DSA:1.10.420.10 590 701 4.2E-35 T 28-03-2018 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 7.9E-19 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00458 Haem peroxidase superfamily signature 157 174 7.9E-19 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 7.9E-19 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00458 Haem peroxidase superfamily signature 175 187 7.9E-19 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00458 Haem peroxidase superfamily signature 97 111 7.9E-19 T 28-03-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 Gene3D G3DSA:1.10.520.10 440 589 9.1E-31 T 28-03-2018 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 74 99 2.8E-50 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 59 72 2.8E-50 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 479 505 2.8E-50 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 33 55 2.8E-50 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 2.8E-50 T 28-03-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 AM348_RS04195 5647eaa87318628c930ce618efa5db2e 726 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 259 269 - T 28-03-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 Gene3D G3DSA:3.10.105.10 312 512 3.6E-56 T 28-03-2018 AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 SUPERFAMILY SSF53850 35 525 1.39E-149 T 28-03-2018 AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 PIRSF PIRSF002741 1 542 6.6E-114 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 Gene3D G3DSA:3.90.76.10 63 175 2.0E-35 T 28-03-2018 AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 463 1.0E-90 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 Gene3D G3DSA:3.40.190.10 176 311 8.6E-39 T 28-03-2018 AM348_RS15970 67b8ae0224c32a8b984986bbe44c60f8 543 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 87 108 - T 28-03-2018 IPR023765 Solute-binding protein family 5, conserved site AM348_RS08910 36fce3314691039e53fb5b812c94f47c 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS08910 36fce3314691039e53fb5b812c94f47c 387 SUPERFAMILY SSF56796 1 385 1.01E-107 T 28-03-2018 AM348_RS08910 36fce3314691039e53fb5b812c94f47c 387 Gene3D G3DSA:3.40.50.1970 9 183 5.9E-42 T 28-03-2018 AM348_RS08910 36fce3314691039e53fb5b812c94f47c 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS08910 36fce3314691039e53fb5b812c94f47c 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 360 5.0E-92 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS08910 36fce3314691039e53fb5b812c94f47c 387 Gene3D G3DSA:1.20.1090.10 184 387 3.6E-43 T 28-03-2018 AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 77 1.0E-29 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 SUPERFAMILY SSF159127 1 76 1.02E-23 T 28-03-2018 AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 28-03-2018 IPR019812 Hydrogenase assembly chaperone, conserved site AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.6E-24 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 1.6E-24 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 45 61 1.6E-24 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 63 75 1.6E-24 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS09015 68c71ee8924544c453b7df338be3cee0 82 Pfam PF01455 HupF/HypC family 1 72 5.3E-25 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 SUPERFAMILY SSF51366 257 450 7.85E-58 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 251 8.3E-98 T 28-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 Gene3D G3DSA:3.20.20.70 1 259 6.6E-63 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 254 35.446 T 28-03-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 257 447 5.3E-62 T 28-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 Gene3D G3DSA:3.20.20.70 260 452 3.8E-56 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 50 68 - T 28-03-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 SUPERFAMILY SSF51366 1 252 8.24E-87 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS16410 565afe3b958d4a57f5a0084d2b7ea5bd 452 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 255 452 29.508 T 28-03-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 AM348_RS13800 f302fea9b84773d17696c302350a5afb 299 SUPERFAMILY SSF51735 1 294 1.66E-102 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13800 f302fea9b84773d17696c302350a5afb 299 Gene3D G3DSA:3.40.50.720 1 171 1.6E-18 T 28-03-2018 AM348_RS13800 f302fea9b84773d17696c302350a5afb 299 Gene3D G3DSA:3.90.25.10 204 278 1.3E-20 T 28-03-2018 AM348_RS13800 f302fea9b84773d17696c302350a5afb 299 Pfam PF04321 RmlD substrate binding domain 1 293 2.6E-106 T 28-03-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AM348_RS13800 f302fea9b84773d17696c302350a5afb 299 Gene3D G3DSA:3.90.25.10 172 203 5.6E-7 T 28-03-2018 AM348_RS13800 f302fea9b84773d17696c302350a5afb 299 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 292 1.1E-94 T 28-03-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 AM348_RS23290 768e170db5f8de69da549c97c23a43ef 299 Pfam PF00348 Polyprenyl synthetase 34 269 1.2E-56 T 28-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 AM348_RS23290 768e170db5f8de69da549c97c23a43ef 299 Gene3D G3DSA:1.10.600.10 265 299 9.2E-4 T 28-03-2018 IPR008949 Isoprenoid synthase domain AM348_RS23290 768e170db5f8de69da549c97c23a43ef 299 Gene3D G3DSA:1.10.600.10 1 264 9.3E-83 T 28-03-2018 IPR008949 Isoprenoid synthase domain AM348_RS23290 768e170db5f8de69da549c97c23a43ef 299 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 28-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM348_RS23290 768e170db5f8de69da549c97c23a43ef 299 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 28-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM348_RS23290 768e170db5f8de69da549c97c23a43ef 299 SUPERFAMILY SSF48576 1 275 1.52E-87 T 28-03-2018 IPR008949 Isoprenoid synthase domain AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 SUPERFAMILY SSF57802 429 478 3.62E-18 T 28-03-2018 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Pfam PF00753 Metallo-beta-lactamase superfamily 34 173 6.9E-10 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Gene3D G3DSA:3.40.50.360 253 395 9.3E-21 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Hamap MF_01312 Anaerobic nitric oxide reductase flavorubredoxin [norV]. 1 478 94.378 T 28-03-2018 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin GO:0005506|GO:0016966 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 SUPERFAMILY SSF52218 251 396 6.13E-34 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Gene3D G3DSA:3.60.15.10 1 247 2.5E-40 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 PRINTS PR00163 Rubredoxin signature 428 444 1.2E-6 T 28-03-2018 IPR024935 Rubredoxin domain GO:0005506 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 PRINTS PR00163 Rubredoxin signature 458 474 1.2E-6 T 28-03-2018 IPR024935 Rubredoxin domain GO:0005506 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 SUPERFAMILY SSF56281 8 285 1.44E-51 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Pfam PF00301 Rubredoxin 429 474 1.7E-20 T 28-03-2018 IPR024935 Rubredoxin domain GO:0005506 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Pfam PF00258 Flavodoxin 256 388 2.5E-12 T 28-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 PIRSF PIRSF005243 1 399 1.5E-161 T 28-03-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 SMART SM00849 34 210 1.3E-27 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS10435 679621ca578610a2d9d86ecb08ea883e 482 Gene3D G3DSA:2.20.28.10 427 479 1.1E-19 T 28-03-2018 AM348_RS12380 74ac01bf975405515b65ee27a81419b0 274 SUPERFAMILY SSF55166 21 272 4.32E-101 T 28-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM348_RS12380 74ac01bf975405515b65ee27a81419b0 274 Hamap MF_01623 Penicillin-insensitive murein endopeptidase [mepA]. 1 274 67.954 T 28-03-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AM348_RS12380 74ac01bf975405515b65ee27a81419b0 274 PIRSF PIRSF018455 1 274 7.5E-120 T 28-03-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AM348_RS12380 74ac01bf975405515b65ee27a81419b0 274 Gene3D G3DSA:3.30.1380.10 20 274 2.5E-96 T 28-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM348_RS12380 74ac01bf975405515b65ee27a81419b0 274 Pfam PF03411 Penicillin-insensitive murein endopeptidase 36 270 6.7E-94 T 28-03-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 28-03-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 PIRSF PIRSF000429 9 436 2.9E-126 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 1.4E-266 T 28-03-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 Gene3D G3DSA:3.40.47.10 301 433 2.1E-24 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 Gene3D G3DSA:3.40.47.10 7 300 3.6E-43 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 1.5E-134 T 28-03-2018 IPR002155 Thiolase GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 28-03-2018 IPR020610 Thiolase, active site GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 74.388 T 28-03-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 28-03-2018 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 SUPERFAMILY SSF53901 15 295 5.15E-62 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 Pfam PF02803 Thiolase, C-terminal domain 297 434 6.3E-36 T 28-03-2018 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 5.8E-61 T 28-03-2018 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 AM348_RS12350 b1b3547dd9272e49b142855a815cd804 436 SUPERFAMILY SSF53901 297 434 1.3E-32 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS02525 c1df16e16300c8d456d5ffc1cd42e01d 372 Gene3D G3DSA:3.40.640.10 43 247 1.2E-17 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS02525 c1df16e16300c8d456d5ffc1cd42e01d 372 SUPERFAMILY SSF53383 7 367 2.69E-32 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS02525 c1df16e16300c8d456d5ffc1cd42e01d 372 Pfam PF03841 L-seryl-tRNA selenium transferase 98 320 2.9E-13 T 28-03-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM348_RS02525 c1df16e16300c8d456d5ffc1cd42e01d 372 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 4.5E-182 T 28-03-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 SUPERFAMILY SSF102114 102 324 5.62E-25 T 28-03-2018 AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 3 328 5.2E-150 T 28-03-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 Pfam PF04055 Radical SAM superfamily 118 262 3.5E-7 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 Gene3D G3DSA:3.20.20.70 101 329 3.3E-19 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 1.3E-159 T 28-03-2018 IPR022462 Lysine-2,3-aminomutase-like AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 Pfam PF13353 4Fe-4S single cluster domain 111 175 1.2E-5 T 28-03-2018 AM348_RS03025 7330756511d2db60cd6bee3859d0695c 342 PIRSF PIRSF004911 1 342 1.6E-122 T 28-03-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase AM348_RS01100 864e15fa69fb1539768f151c172f8d41 457 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS01100 864e15fa69fb1539768f151c172f8d41 457 Pfam PF00324 Amino acid permease 19 450 1.6E-127 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS01100 864e15fa69fb1539768f151c172f8d41 457 PIRSF PIRSF006060 1 449 3.0E-80 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 Gene3D G3DSA:3.30.70.20 3 80 1.0E-18 T 28-03-2018 AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 SUPERFAMILY SSF54862 3 195 1.99E-69 T 28-03-2018 AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 Pfam PF13247 4Fe-4S dicluster domain 59 153 1.5E-28 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0027 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 2.1E-80 T 28-03-2018 IPR014297 Dimethylsulphoxide reductase, chain B AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 Gene3D G3DSA:3.30.70.20 119 193 1.6E-17 T 28-03-2018 AM348_RS17860 9c64b5557a4032d1aba9124678bdb855 205 Gene3D G3DSA:3.30.70.20 81 118 9.6E-21 T 28-03-2018 AM348_RS10085 58b3e716a104796d3a007dacdd4ca588 347 SUPERFAMILY SSF53187 41 316 2.43E-36 T 28-03-2018 AM348_RS10085 58b3e716a104796d3a007dacdd4ca588 347 Gene3D G3DSA:3.40.630.10 23 343 8.5E-40 T 28-03-2018 AM348_RS10085 58b3e716a104796d3a007dacdd4ca588 347 Pfam PF04389 Peptidase family M28 100 328 6.7E-34 T 28-03-2018 IPR007484 Peptidase M28 AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 Gene3D G3DSA:3.40.50.300 1 251 1.8E-69 T 28-03-2018 AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 Pfam PF08402 TOBE domain 281 353 5.3E-12 T 28-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 Gene3D G3DSA:2.40.50.140 294 346 8.8E-10 T 28-03-2018 AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 SUPERFAMILY SSF52540 4 243 5.19E-85 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 SUPERFAMILY SSF50331 236 364 9.96E-32 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 SMART SM00382 28 211 3.3E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 Pfam PF00005 ABC transporter 20 161 2.6E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03615 1333b0ddf17214d4b2d28290698ad5f0 369 Gene3D G3DSA:2.40.50.100 252 293 1.5E-11 T 28-03-2018 AM348_RS00905 132f94ab9ad3da95b9c2bbdb65dbadf0 234 Pfam PF03749 Sugar fermentation stimulation protein 13 225 3.1E-75 T 28-03-2018 IPR005224 Sugar fermentation stimulation protein AM348_RS00905 132f94ab9ad3da95b9c2bbdb65dbadf0 234 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 1 233 4.1E-96 T 28-03-2018 IPR005224 Sugar fermentation stimulation protein AM348_RS00905 132f94ab9ad3da95b9c2bbdb65dbadf0 234 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 56.99 T 28-03-2018 IPR005224 Sugar fermentation stimulation protein AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 SUPERFAMILY SSF47170 25 178 3.4E-38 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 SMART SM00283 269 516 1.9E-95 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 28-03-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 Pfam PF02203 Tar ligand binding domain homologue 1 172 1.0E-40 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 Pfam PF00672 HAMP domain 216 263 1.7E-7 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 SMART SM00319 44 182 8.2E-7 T 28-03-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 Gene3D G3DSA:1.20.120.30 23 190 1.3E-32 T 28-03-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 SUPERFAMILY SSF58104 236 517 3.14E-73 T 28-03-2018 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 Gene3D G3DSA:1.10.287.950 328 520 5.0E-49 T 28-03-2018 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 Gene3D G3DSA:1.10.287.1060 243 327 0.044 T 28-03-2018 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 1.1E-57 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 SMART SM00304 216 268 4.4E-8 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS02720 186af96580d67ea9e0d0dee44ae7391e 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.5E-80 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 Pfam PF00520 Ion transport protein 30 246 1.7E-27 T 28-03-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 90 110 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 64 87 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 18 46 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 215 241 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 128 154 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 157 180 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 PRINTS PR00169 Potassium channel signature 186 208 1.0E-33 T 28-03-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 Gene3D G3DSA:1.20.120.350 23 156 9.2E-22 T 28-03-2018 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 Gene3D G3DSA:1.20.5.110 207 243 2.2E-14 T 28-03-2018 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 Gene3D G3DSA:1.10.287.70 157 205 1.1E-11 T 28-03-2018 AM348_RS16000 cdd4f25fbef4c93b60cdbd9ff68bfb91 278 SUPERFAMILY SSF81324 25 242 1.83E-47 T 28-03-2018 AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 Gene3D G3DSA:2.30.30.30 2 93 4.8E-30 T 28-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.948 T 28-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 SUPERFAMILY SSF50104 4 100 7.22E-33 T 28-03-2018 IPR008991 Translation protein SH3-like domain AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 1.5E-39 T 28-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 Pfam PF00467 KOW motif 8 37 7.7E-5 T 28-03-2018 IPR005824 KOW AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 1.8E-22 T 28-03-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 SMART SM00739 4 31 9.8E-4 T 28-03-2018 IPR005824 KOW AM348_RS07395 9308c70aa01a33f06d4048656b23f41c 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 28-03-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 559 588 1.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 434 1.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 511 540 1.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 482 509 1.8E-37 T 28-03-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 SMART SM00304 329 383 9.1E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 Pfam PF08376 Nitrate and nitrite sensing 58 294 4.6E-50 T 28-03-2018 IPR013587 Nitrate/nitrite sensing protein AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 SMART SM00283 384 631 1.1E-57 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 SUPERFAMILY SSF58104 351 631 1.57E-60 T 28-03-2018 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 455 599 1.1E-37 T 28-03-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 Gene3D G3DSA:1.10.287.950 437 632 1.2E-40 T 28-03-2018 AM348_RS12235 5e2e7721b87bb710d75848d830c7515d 632 Gene3D G3DSA:1.10.287.950 37 436 3.8E-12 T 28-03-2018 AM348_RS09735 bc51e98cfc0df6b5b484bc4156b97eaf 231 SUPERFAMILY SSF52980 8 227 1.02E-78 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS09735 bc51e98cfc0df6b5b484bc4156b97eaf 231 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 231 156.545 T 28-03-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 AM348_RS09735 bc51e98cfc0df6b5b484bc4156b97eaf 231 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 11 226 2.3E-112 T 28-03-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 AM348_RS09735 bc51e98cfc0df6b5b484bc4156b97eaf 231 Gene3D G3DSA:3.40.600.10 6 229 5.2E-56 T 28-03-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 AM348_RS09735 bc51e98cfc0df6b5b484bc4156b97eaf 231 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 1.2E-33 T 28-03-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 AM348_RS09735 bc51e98cfc0df6b5b484bc4156b97eaf 231 SMART SM00927 59 157 1.2E-64 T 28-03-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 28 41 - T 28-03-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 SUPERFAMILY SSF49899 328 476 2.45E-30 T 28-03-2018 IPR013320 Concanavalin A-like lectin/glucanase domain AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 353 473 4.9E-23 T 28-03-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 Gene3D G3DSA:2.60.120.560 354 476 3.4E-26 T 28-03-2018 AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 28 328 3.4E-105 T 28-03-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 SUPERFAMILY SSF75005 19 329 9.74E-115 T 28-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 15 449 1.3E-147 T 28-03-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 Gene3D G3DSA:2.115.10.20 33 353 6.4E-110 T 28-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM348_RS15690 1a71dd178fa5072fe2ec17af7a4aef8e 478 SMART SM00640 28 439 2.5E-148 T 28-03-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 Pfam PF03104 DNA polymerase family B, exonuclease domain 199 296 2.8E-7 T 28-03-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 Pfam PF03104 DNA polymerase family B, exonuclease domain 73 164 1.9E-5 T 28-03-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 Pfam PF00136 DNA polymerase family B 378 734 7.3E-42 T 28-03-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 SMART SM00486 148 555 3.4E-81 T 28-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 Gene3D G3DSA:3.30.420.10 151 347 2.6E-43 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 SUPERFAMILY SSF53098 3 389 1.01E-97 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 SUPERFAMILY SSF56672 395 783 1.72E-113 T 28-03-2018 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 415 428 7.0E-10 T 28-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 489 501 7.0E-10 T 28-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 541 549 7.0E-10 T 28-03-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 ProSitePatterns PS00116 DNA polymerase family B signature. 543 551 - T 28-03-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS01385 87cb8a3b31c43160f943d6e7c29f0bc5 783 Gene3D G3DSA:3.90.1600.10 392 600 4.5E-50 T 28-03-2018 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS20620 d73f7306aab4893a5391c1e14f4fc2fa 381 SUPERFAMILY SSF51679 3 349 3.93E-98 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS20620 d73f7306aab4893a5391c1e14f4fc2fa 381 Pfam PF00296 Luciferase-like monooxygenase 5 326 1.1E-86 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS20620 d73f7306aab4893a5391c1e14f4fc2fa 381 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 4 379 70.176 T 28-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AM348_RS20620 d73f7306aab4893a5391c1e14f4fc2fa 381 Gene3D G3DSA:3.20.20.30 1 354 9.5E-93 T 28-03-2018 AM348_RS20620 d73f7306aab4893a5391c1e14f4fc2fa 381 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 1.1E-189 T 28-03-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 Gene3D G3DSA:1.10.10.10 260 330 1.8E-33 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 SMART SM00382 54 181 1.3E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 SUPERFAMILY SSF46785 260 333 6.26E-25 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 336 185.127 T 28-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 3.3E-147 T 28-03-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 SUPERFAMILY SSF52540 23 255 9.67E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 331 1.0E-40 T 28-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 Gene3D G3DSA:1.10.8.60 187 257 2.4E-31 T 28-03-2018 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 3.8E-116 T 28-03-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 Gene3D G3DSA:3.40.50.300 21 184 1.8E-27 T 28-03-2018 AM348_RS15140 c66c861fae6c2292ae57eed9433effbf 336 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.1E-32 T 28-03-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 Pfam PF00085 Thioredoxin 5 106 2.0E-34 T 28-03-2018 IPR013766 Thioredoxin domain GO:0045454 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 SUPERFAMILY SSF52833 2 108 1.04E-41 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS05050 850143d49315e8891aad60bd107000ef 109 Gene3D G3DSA:3.40.30.10 1 109 6.2E-36 T 28-03-2018 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 PIRSF PIRSF000077 2 108 5.9E-45 T 28-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 PRINTS PR00421 Thioredoxin family signature 24 32 3.8E-10 T 28-03-2018 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 PRINTS PR00421 Thioredoxin family signature 72 83 3.8E-10 T 28-03-2018 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 PRINTS PR00421 Thioredoxin family signature 32 41 3.8E-10 T 28-03-2018 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS05050 850143d49315e8891aad60bd107000ef 109 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 2.1E-39 T 28-03-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 AM348_RS03160 ffa1e7fd7f826fef0c0d2c055f6c9fc8 476 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 8 450 1.3E-167 T 28-03-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 AM348_RS03160 ffa1e7fd7f826fef0c0d2c055f6c9fc8 476 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 59 84 - T 28-03-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 AM348_RS03160 ffa1e7fd7f826fef0c0d2c055f6c9fc8 476 Pfam PF13347 MFS/sugar transport protein 10 436 7.0E-83 T 28-03-2018 AM348_RS03160 ffa1e7fd7f826fef0c0d2c055f6c9fc8 476 SUPERFAMILY SSF103473 10 443 1.83E-31 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS03160 ffa1e7fd7f826fef0c0d2c055f6c9fc8 476 Gene3D G3DSA:1.20.1250.20 221 448 8.9E-12 T 28-03-2018 AM348_RS03160 ffa1e7fd7f826fef0c0d2c055f6c9fc8 476 Gene3D G3DSA:1.20.1250.20 7 217 6.5E-13 T 28-03-2018 AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 Pfam PF03625 Domain of unknown function DUF302 443 504 3.3E-17 T 28-03-2018 IPR005180 Domain of unknown function DUF302 AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 SUPERFAMILY SSF56601 265 386 1.58E-56 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 SUPERFAMILY SSF56601 49 238 1.58E-56 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 Gene3D G3DSA:3.40.710.10 48 401 1.5E-61 T 28-03-2018 AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 Gene3D G3DSA:3.30.310.70 413 538 6.8E-29 T 28-03-2018 IPR005180 Domain of unknown function DUF302 AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 Pfam PF00144 Beta-lactamase 50 398 2.9E-47 T 28-03-2018 IPR001466 Beta-lactamase-related AM348_RS10285 0c362f92ee1a97466a46d85b4de3324d 540 SUPERFAMILY SSF103247 415 534 2.49E-30 T 28-03-2018 IPR005180 Domain of unknown function DUF302 AM348_RS12725 9302835036d8f4ecb5e976d779283c63 327 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 325 60.64 T 28-03-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 AM348_RS12725 9302835036d8f4ecb5e976d779283c63 327 Pfam PF00535 Glycosyl transferase family 2 11 171 3.6E-31 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS12725 9302835036d8f4ecb5e976d779283c63 327 Gene3D G3DSA:3.90.550.10 3 234 8.5E-29 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS12725 9302835036d8f4ecb5e976d779283c63 327 SUPERFAMILY SSF53448 8 228 2.1E-35 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 SUPERFAMILY SSF55129 3 59 5.1E-21 T 28-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 5.0E-28 T 28-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 28-03-2018 IPR018038 Ribosomal protein L30, conserved site AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 21.935 T 28-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 54 9.9E-19 T 28-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 PIRSF PIRSF002211 1 59 2.8E-29 T 28-03-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07430 4feffea74a7b86a96c498c445aa4994e 59 Gene3D G3DSA:3.30.1390.20 5 59 1.7E-23 T 28-03-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain AM348_RS11415 7677dbb086fc211dadf5d85d29585bd4 360 Gene3D G3DSA:2.60.40.1090 206 358 5.2E-16 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS11415 7677dbb086fc211dadf5d85d29585bd4 360 SUPERFAMILY SSF49401 217 357 1.54E-11 T 28-03-2018 IPR008966 Adhesion domain AM348_RS11415 7677dbb086fc211dadf5d85d29585bd4 360 Pfam PF00419 Fimbrial protein 210 357 4.3E-18 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 Pfam PF00293 NUDIX domain 1 132 9.8E-20 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 SUPERFAMILY SSF55811 2 126 7.18E-25 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 Gene3D G3DSA:3.90.79.10 1 139 2.5E-27 T 28-03-2018 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 Hamap MF_01846 Nucleoside triphosphatase NudI [nudI]. 1 141 47.806 T 28-03-2018 IPR023781 Nucleoside triphosphatase NudI GO:0016818 KEGG: 00240+3.6.1.23+3.6.1.12 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.6E-5 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS12735 b2f39047ffc79f9612e77013bd919fa5 141 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.6E-5 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 Gene3D G3DSA:3.90.1170.20 11 156 1.8E-43 T 28-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 129 5.5E-25 T 28-03-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 296 1.4E-102 T 28-03-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 SUPERFAMILY SSF51690 131 296 1.96E-59 T 28-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 PIRSF PIRSF006250 17 297 4.3E-111 T 28-03-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 SUPERFAMILY SSF54675 12 130 4.71E-33 T 28-03-2018 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 Gene3D G3DSA:3.20.20.70 157 286 8.9E-41 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS01125 2c32e67782da9438bcc70f9f265b76f8 297 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 131 295 6.8E-61 T 28-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS13340 ee1d1ab492a2bc238995d326d76dad37 243 Gene3D G3DSA:1.10.3720.10 7 243 3.0E-24 T 28-03-2018 AM348_RS13340 ee1d1ab492a2bc238995d326d76dad37 243 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 230 3.3E-17 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13340 ee1d1ab492a2bc238995d326d76dad37 243 SUPERFAMILY SSF161098 46 232 3.14E-30 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS01495 8123422e9ab233999911d34e8fcf3498 505 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 52 499 1.0E-166 T 28-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM348_RS01495 8123422e9ab233999911d34e8fcf3498 505 ProSitePatterns PS01303 BCCT family of transporters signature. 315 324 - T 28-03-2018 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS01495 8123422e9ab233999911d34e8fcf3498 505 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 14 499 1.5E-115 T 28-03-2018 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 AM348_RS01495 8123422e9ab233999911d34e8fcf3498 505 Hamap MF_01049 L-carnitine/gamma-butyrobetaine antiporter [caiT]. 1 504 61.154 T 28-03-2018 IPR023449 L-carnitine/gamma-butyrobetaine antiporter CaiT GO:0016020|GO:0044667|GO:1900749|GO:1900751 AM348_RS05015 3457eb42a3569606d66fe93161e3bbc9 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 5.9E-99 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05015 3457eb42a3569606d66fe93161e3bbc9 355 Gene3D G3DSA:3.90.25.10 195 351 2.0E-50 T 28-03-2018 AM348_RS05015 3457eb42a3569606d66fe93161e3bbc9 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 341 3.8E-163 T 28-03-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM348_RS05015 3457eb42a3569606d66fe93161e3bbc9 355 Gene3D G3DSA:3.40.50.720 1 194 1.7E-39 T 28-03-2018 AM348_RS05015 3457eb42a3569606d66fe93161e3bbc9 355 SUPERFAMILY SSF51735 1 339 2.57E-97 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03390 21dd715d5efa7a05f8a50974846d6eb2 203 SUPERFAMILY SSF48452 68 180 2.25E-14 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS03390 21dd715d5efa7a05f8a50974846d6eb2 203 Gene3D G3DSA:1.25.40.10 60 118 3.4E-7 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS03390 21dd715d5efa7a05f8a50974846d6eb2 203 Gene3D G3DSA:1.25.40.10 119 199 8.9E-11 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS03390 21dd715d5efa7a05f8a50974846d6eb2 203 SMART SM00028 78 111 1.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS03390 21dd715d5efa7a05f8a50974846d6eb2 203 SMART SM00028 149 182 61.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS10690 ee0096b8c0dc49127a40735a4130eee1 466 Pfam PF00324 Amino acid permease 18 453 5.0E-126 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS10690 ee0096b8c0dc49127a40735a4130eee1 466 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS10690 ee0096b8c0dc49127a40735a4130eee1 466 PIRSF PIRSF006060 1 461 2.4E-72 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS10690 ee0096b8c0dc49127a40735a4130eee1 466 TIGRFAM TIGR01773 GABAperm: GABA permease 1 452 5.3E-252 T 28-03-2018 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 1 348 1.5E-166 T 28-03-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 Gene3D G3DSA:3.40.50.40 235 347 1.9E-31 T 28-03-2018 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 4.7E-23 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 PRINTS PR00139 Asparaginase/glutaminase family signature 282 300 4.7E-23 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 4.7E-23 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 28-03-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 PIRSF PIRSF500176 22 348 1.6E-82 T 28-03-2018 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 Pfam PF00710 Asparaginase, N-terminal 25 216 9.9E-64 T 28-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 28-03-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 SMART SM00870 25 342 4.6E-146 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 SUPERFAMILY SSF53774 23 347 3.14E-109 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 Gene3D G3DSA:3.40.50.1170 21 231 4.1E-64 T 28-03-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 AM348_RS09210 7f0a726d3e1e70bce56607241c723857 348 PIRSF PIRSF001220 20 348 5.7E-93 T 28-03-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 SMART SM00490 263 345 7.9E-12 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 Pfam PF00271 Helicase conserved C-terminal domain 240 343 1.0E-13 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 Pfam PF04851 Type III restriction enzyme, res subunit 3 154 1.7E-24 T 28-03-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 SUPERFAMILY SSF52540 50 169 3.57E-38 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 SUPERFAMILY SSF52540 237 363 3.57E-38 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 Gene3D G3DSA:3.40.50.300 1 241 1.6E-31 T 28-03-2018 AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 SMART SM00487 1 185 8.6E-20 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 SUPERFAMILY SSF57829 424 465 4.76E-7 T 28-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AM348_RS12995 655a79b1142ec036f290df84e6ede979 586 Gene3D G3DSA:3.40.50.300 242 577 1.4E-15 T 28-03-2018 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 SUPERFAMILY SSF50621 274 407 1.81E-41 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 Hamap MF_01201 Alanine racemase. 41 407 25.272 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 Pfam PF01168 Alanine racemase, N-terminal domain 48 270 5.8E-46 T 28-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 SMART SM01005 279 407 2.6E-50 T 28-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 SUPERFAMILY SSF51419 48 283 1.1E-45 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 72 82 - T 28-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 PRINTS PR00992 Alanine racemase signature 67 83 3.5E-25 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 PRINTS PR00992 Alanine racemase signature 244 271 3.5E-25 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 PRINTS PR00992 Alanine racemase signature 312 327 3.5E-25 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 PRINTS PR00992 Alanine racemase signature 333 350 3.5E-25 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 PRINTS PR00992 Alanine racemase signature 201 212 3.5E-25 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 PRINTS PR00992 Alanine racemase signature 103 121 3.5E-25 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 Pfam PF00842 Alanine racemase, C-terminal domain 279 405 1.2E-33 T 28-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 Gene3D G3DSA:3.20.20.10 42 255 1.7E-32 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 TIGRFAM TIGR00492 alr: alanine racemase 44 393 2.8E-70 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS17030 6a979d0f569dc9fff36999aa1d0274cc 408 Gene3D G3DSA:2.40.37.10 256 408 1.9E-50 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS16425 420eae3efdf42fbd467b53c1293704fd 14 Pfam PF08255 Trp-operon Leader Peptide 1 14 2.8E-9 T 28-03-2018 IPR013205 Leader peptide, tryptophan-operon AM348_RS05320 10eb9dbaf34944ae02cef7648c28f048 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS05320 10eb9dbaf34944ae02cef7648c28f048 257 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 11 257 2.8E-121 T 28-03-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 AM348_RS05320 10eb9dbaf34944ae02cef7648c28f048 257 Pfam PF00005 ABC transporter 26 181 1.4E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS05320 10eb9dbaf34944ae02cef7648c28f048 257 SUPERFAMILY SSF52540 11 243 9.32E-61 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05320 10eb9dbaf34944ae02cef7648c28f048 257 SMART SM00382 35 237 1.2E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05320 10eb9dbaf34944ae02cef7648c28f048 257 Gene3D G3DSA:3.40.50.300 9 255 1.4E-63 T 28-03-2018 AM348_RS21410 5ed8a2fe2cea01b805798262d91b8be5 427 ProSitePatterns PS00503 Pectinesterase signature 2. 280 289 - T 28-03-2018 IPR033131 Pectinesterase, Asp active site KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 AM348_RS21410 5ed8a2fe2cea01b805798262d91b8be5 427 SUPERFAMILY SSF51126 76 156 3.77E-36 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS21410 5ed8a2fe2cea01b805798262d91b8be5 427 SUPERFAMILY SSF51126 407 420 3.77E-36 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS21410 5ed8a2fe2cea01b805798262d91b8be5 427 SUPERFAMILY SSF51126 192 376 3.77E-36 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS21410 5ed8a2fe2cea01b805798262d91b8be5 427 Pfam PF01095 Pectinesterase 195 340 2.9E-10 T 28-03-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 AM348_RS21410 5ed8a2fe2cea01b805798262d91b8be5 427 Gene3D G3DSA:2.160.20.10 74 426 4.0E-49 T 28-03-2018 IPR012334 Pectin lyase fold AM348_RS12710 eab10c47cc8169bd82a9c0bb6e0787f3 552 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 2 552 42.194 T 28-03-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 AM348_RS12710 eab10c47cc8169bd82a9c0bb6e0787f3 552 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 6 238 1.4E-51 T 28-03-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 SMART SM00155 352 379 1.4E-4 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 SMART SM00155 133 159 0.012 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 SUPERFAMILY SSF56024 9 215 4.19E-27 T 28-03-2018 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 SUPERFAMILY SSF56024 252 393 2.2E-18 T 28-03-2018 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 Gene3D G3DSA:3.30.870.10 248 418 1.3E-18 T 28-03-2018 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 PIRSF PIRSF000850 1 451 1.4E-267 T 28-03-2018 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 Gene3D G3DSA:3.30.870.10 14 240 6.7E-18 T 28-03-2018 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 Pfam PF13091 PLD-like domain 40 153 3.0E-6 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS11185 67ee69604dfa35f8fd66c085c07b2811 451 Pfam PF13091 PLD-like domain 257 403 7.4E-22 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS11575 bd6369c5cab4a986843fb487c07e47f6 388 Pfam PF04055 Radical SAM superfamily 124 293 1.0E-16 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS11575 bd6369c5cab4a986843fb487c07e47f6 388 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 21 368 75.109 T 28-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS11575 bd6369c5cab4a986843fb487c07e47f6 388 SUPERFAMILY SSF102114 120 329 5.49E-15 T 28-03-2018 AM348_RS11575 bd6369c5cab4a986843fb487c07e47f6 388 Gene3D G3DSA:3.20.20.70 30 387 3.1E-42 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11575 bd6369c5cab4a986843fb487c07e47f6 388 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 18 373 1.1E-176 T 28-03-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS11575 bd6369c5cab4a986843fb487c07e47f6 388 PIRSF PIRSF006004 15 381 1.3E-147 T 28-03-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS07435 820f7e5acf79041df5a7b16d88a0310b 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 1.4E-51 T 28-03-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07435 820f7e5acf79041df5a7b16d88a0310b 144 SUPERFAMILY SSF52080 4 143 2.49E-46 T 28-03-2018 IPR021131 Ribosomal protein L18e/L15P AM348_RS07435 820f7e5acf79041df5a7b16d88a0310b 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 3.7E-32 T 28-03-2018 IPR021131 Ribosomal protein L18e/L15P AM348_RS07435 820f7e5acf79041df5a7b16d88a0310b 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.613 T 28-03-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 AM348_RS07435 820f7e5acf79041df5a7b16d88a0310b 144 Gene3D G3DSA:3.100.10.10 42 144 9.4E-25 T 28-03-2018 AM348_RS07435 820f7e5acf79041df5a7b16d88a0310b 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 28-03-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 SUPERFAMILY SSF53383 121 444 2.77E-65 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 77 2.2E-8 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 Gene3D G3DSA:3.40.640.10 144 358 2.6E-34 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 SUPERFAMILY SSF46785 11 81 1.09E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 Gene3D G3DSA:3.90.1150.10 359 489 7.8E-8 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 Pfam PF00155 Aminotransferase class I and II 133 404 1.5E-19 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 Gene3D G3DSA:1.10.10.10 2 78 6.2E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13075 9c2d1f2e5eadece6d0adc3152d25c73a 490 SMART SM00345 18 77 1.9E-6 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS19955 6e2cd9dca11808907625ccc1e0a23a9b 307 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 2.3E-26 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS19955 6e2cd9dca11808907625ccc1e0a23a9b 307 Gene3D G3DSA:3.30.360.10 130 307 7.6E-19 T 28-03-2018 AM348_RS19955 6e2cd9dca11808907625ccc1e0a23a9b 307 Gene3D G3DSA:3.40.50.720 1 129 5.1E-33 T 28-03-2018 AM348_RS19955 6e2cd9dca11808907625ccc1e0a23a9b 307 SUPERFAMILY SSF55347 126 265 1.02E-45 T 28-03-2018 AM348_RS19955 6e2cd9dca11808907625ccc1e0a23a9b 307 SUPERFAMILY SSF51735 3 136 3.15E-42 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18825 3564a9fe5787393a7c90b8e7e4aea357 237 Pfam PF00563 EAL domain 75 222 4.2E-8 T 28-03-2018 IPR001633 EAL domain AM348_RS18825 3564a9fe5787393a7c90b8e7e4aea357 237 Gene3D G3DSA:3.20.20.450 26 236 9.4E-12 T 28-03-2018 IPR001633 EAL domain AM348_RS18825 3564a9fe5787393a7c90b8e7e4aea357 237 SUPERFAMILY SSF141868 66 223 3.14E-8 T 28-03-2018 IPR001633 EAL domain AM348_RS10600 96ba0421f3cf32b2f8e58278ceeb99e1 354 Gene3D G3DSA:1.10.3720.10 137 336 2.0E-38 T 28-03-2018 AM348_RS10600 96ba0421f3cf32b2f8e58278ceeb99e1 354 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 163 324 7.3E-26 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS10600 96ba0421f3cf32b2f8e58278ceeb99e1 354 SUPERFAMILY SSF161098 142 324 7.85E-44 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06860 ef91fecb5f543bbf75a1e945c2a8589b 176 Gene3D G3DSA:3.40.50.300 7 176 3.9E-27 T 28-03-2018 AM348_RS06860 ef91fecb5f543bbf75a1e945c2a8589b 176 Pfam PF01202 Shikimate kinase 17 169 3.7E-11 T 28-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS06860 ef91fecb5f543bbf75a1e945c2a8589b 176 SUPERFAMILY SSF52540 4 172 5.7E-26 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06860 ef91fecb5f543bbf75a1e945c2a8589b 176 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 11 171 1.4E-69 T 28-03-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 AM348_RS04995 51fef4a0b4e978cb8513dca5ce72754b 416 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 40.773 T 28-03-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 AM348_RS04995 51fef4a0b4e978cb8513dca5ce72754b 416 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 5.7E-12 T 28-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.2E-50 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.2E-50 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.2E-50 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.2E-50 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.2E-50 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.2E-50 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.668 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 Gene3D G3DSA:3.90.226.10 9 316 1.2E-68 T 28-03-2018 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 SUPERFAMILY SSF52096 5 318 1.01E-103 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 3.5E-62 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS00690 2af5dec7b72b78569e2b541e5a1a96a7 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 2.4E-173 T 28-03-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 257 47.41 T 28-03-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 Gene3D G3DSA:3.90.79.10 126 257 1.7E-35 T 28-03-2018 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 2.0E-12 T 28-03-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 Pfam PF00293 NUDIX domain 132 234 1.6E-17 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 SUPERFAMILY SSF55811 79 241 2.84E-41 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 SUPERFAMILY SSF55811 3 96 3.41E-28 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS03915 eb31e82644869260b39d457ee39f8283 257 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 Pfam PF07549 SecD/SecF GG Motif 120 140 6.1E-6 T 28-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 601 1.1E-151 T 28-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 SUPERFAMILY SSF82866 410 606 1.83E-40 T 28-03-2018 AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 SUPERFAMILY SSF82866 337 349 1.83E-40 T 28-03-2018 AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 615 50.988 T 28-03-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 Pfam PF02355 Protein export membrane protein 433 601 1.5E-14 T 28-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 345 594 1.6E-84 T 28-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 Pfam PF13721 SecD export protein N-terminal TM region 2 103 1.2E-38 T 28-03-2018 IPR027398 SecD export protein N-terminal TM domain AM348_RS23360 d198d4edb50ee389ddec0b762de76c48 615 Gene3D G3DSA:1.20.1640.10 383 609 4.6E-30 T 28-03-2018 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 282 7.8E-120 T 28-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 SUPERFAMILY SSF46934 4 54 2.24E-18 T 28-03-2018 IPR009060 UBA-like GO:0005515 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 Hamap MF_00050 Elongation factor Ts [tsf]. 1 280 79.187 T 28-03-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 Gene3D G3DSA:3.30.479.20 149 279 1.0E-47 T 28-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 Gene3D G3DSA:3.30.479.20 58 148 9.7E-15 T 28-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 SUPERFAMILY SSF54713 56 139 1.99E-20 T 28-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 SUPERFAMILY SSF54713 142 281 2.71E-52 T 28-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 28-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 Pfam PF00889 Elongation factor TS 71 263 5.7E-65 T 28-03-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 Gene3D G3DSA:1.10.8.10 1 56 1.0E-23 T 28-03-2018 AM348_RS00770 ee7c43fe52120c61c863ce1d3f9b0259 283 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 28-03-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 SUPERFAMILY SSF56176 344 428 7.36E-24 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 Gene3D G3DSA:3.30.465.10 356 431 4.5E-24 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 SMART SM01091 346 426 1.2E-29 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 Pfam PF03471 Transporter associated domain 347 425 1.2E-22 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 Gene3D G3DSA:3.20.20.70 160 355 5.3E-21 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 Pfam PF00571 CBS domain 284 333 0.0026 T 28-03-2018 IPR000644 CBS domain AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 Pfam PF01595 Domain of unknown function DUF21 7 197 7.3E-38 T 28-03-2018 IPR002550 Domain of unknown function DUF21 AM348_RS02670 e5d5dee9913b824b8a6119dc87b08df9 446 SUPERFAMILY SSF54631 200 335 8.85E-22 T 28-03-2018 AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 Gene3D G3DSA:3.30.230.10 2 179 3.1E-36 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 SMART SM00382 209 389 2.7E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 Gene3D G3DSA:3.40.50.300 180 437 4.4E-23 T 28-03-2018 AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 SUPERFAMILY SSF52540 189 502 5.58E-48 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 492 1.7E-29 T 28-03-2018 IPR025158 Mg chelatase-related protein, C-terminal domain AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 SUPERFAMILY SSF54211 11 169 8.34E-29 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 386 6.3E-89 T 28-03-2018 IPR000523 Magnesium chelatase ChlI domain AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 288 303 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 492 9.9E-234 T 28-03-2018 IPR004482 Mg chelatase-related protein AM348_RS05125 4e86d703e73b751a6f0db217ddb71b3b 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.2E-43 T 28-03-2018 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 10 255 3.8E-100 T 28-03-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 SUPERFAMILY SSF53790 8 255 6.15E-69 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 215 2.3E-46 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 13 27 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 83 116 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 Gene3D G3DSA:3.30.950.10 129 250 1.3E-29 T 28-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14110 46a9dc82df4609e35f046f9430986a19 257 Gene3D G3DSA:3.40.1010.10 8 128 2.0E-29 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 Pfam PF02378 Phosphotransferase system, EIIC 21 359 2.0E-93 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 420 503 1.8E-20 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 72 370 3.2E-88 T 28-03-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 Gene3D G3DSA:3.30.1360.60 442 517 4.0E-28 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 SUPERFAMILY SSF55604 444 517 4.71E-22 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 457 474 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS10040 a6238380a4172d060a89e393f83d433e 518 Pfam PF00367 phosphotransferase system, EIIB 447 479 9.7E-14 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS18075 7cc5f0f9f00bef026db0a9bd4deca198 449 SMART SM00267 270 444 6.0E-59 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18075 7cc5f0f9f00bef026db0a9bd4deca198 449 Gene3D G3DSA:3.30.70.270 278 448 8.1E-51 T 28-03-2018 AM348_RS18075 7cc5f0f9f00bef026db0a9bd4deca198 449 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 281 442 2.0E-48 T 28-03-2018 IPR000160 GGDEF domain AM348_RS18075 7cc5f0f9f00bef026db0a9bd4deca198 449 SUPERFAMILY SSF55073 287 446 9.42E-46 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS18075 7cc5f0f9f00bef026db0a9bd4deca198 449 Pfam PF17158 Membrane-associated sensor, integral membrane domain 40 268 1.1E-39 T 28-03-2018 IPR033424 Membrane-associated sensor domain AM348_RS18075 7cc5f0f9f00bef026db0a9bd4deca198 449 Pfam PF00990 Diguanylate cyclase, GGDEF domain 283 439 2.5E-47 T 28-03-2018 IPR000160 GGDEF domain AM348_RS14010 759407b3f9b93d1cea9fdda4ed418f77 91 Gene3D G3DSA:2.40.50.220 1 91 8.0E-31 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS14010 759407b3f9b93d1cea9fdda4ed418f77 91 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 87 2.0E-25 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS14010 759407b3f9b93d1cea9fdda4ed418f77 91 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 87 5.1E-30 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS14010 759407b3f9b93d1cea9fdda4ed418f77 91 SUPERFAMILY SSF159133 1 89 2.62E-26 T 28-03-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml AM348_RS09445 3e23d3ee8b5c2263147e3c99da87dfb1 129 Pfam PF01597 Glycine cleavage H-protein 8 128 8.1E-49 T 28-03-2018 IPR033753 Glycine cleavage system H-protein/Simiate AM348_RS09445 3e23d3ee8b5c2263147e3c99da87dfb1 129 SUPERFAMILY SSF51230 4 128 2.72E-45 T 28-03-2018 IPR011053 Single hybrid motif AM348_RS09445 3e23d3ee8b5c2263147e3c99da87dfb1 129 Gene3D G3DSA:2.40.50.100 6 129 1.8E-48 T 28-03-2018 AM348_RS09445 3e23d3ee8b5c2263147e3c99da87dfb1 129 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 129 1.7E-60 T 28-03-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AM348_RS09445 3e23d3ee8b5c2263147e3c99da87dfb1 129 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 42.474 T 28-03-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 AM348_RS09445 3e23d3ee8b5c2263147e3c99da87dfb1 129 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 28-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM348_RS21060 8f97944a3295ea413d780b931ffcbaf1 306 Gene3D G3DSA:1.10.3720.10 3 293 2.0E-45 T 28-03-2018 AM348_RS21060 8f97944a3295ea413d780b931ffcbaf1 306 SUPERFAMILY SSF161098 90 288 3.14E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21060 8f97944a3295ea413d780b931ffcbaf1 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 6.6E-43 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS04690 f35f8cd0c548857164b853f61987a74d 172 SUPERFAMILY SSF52540 7 170 2.79E-25 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04690 f35f8cd0c548857164b853f61987a74d 172 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 10 144 1.7E-49 T 28-03-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AM348_RS04690 f35f8cd0c548857164b853f61987a74d 172 Gene3D G3DSA:3.40.50.300 3 172 1.6E-31 T 28-03-2018 AM348_RS04690 f35f8cd0c548857164b853f61987a74d 172 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 10 169 4.7E-52 T 28-03-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 AM348_RS06385 7a2067b36d828d02a6c806f12091384c 333 Pfam PF03631 Virulence factor BrkB 61 321 1.5E-48 T 28-03-2018 IPR017039 Virulence factor BrkB AM348_RS06385 7a2067b36d828d02a6c806f12091384c 333 PIRSF PIRSF035875 34 324 5.1E-25 T 28-03-2018 IPR017039 Virulence factor BrkB AM348_RS06385 7a2067b36d828d02a6c806f12091384c 333 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 48 322 5.6E-129 T 28-03-2018 IPR005274 Inner membrane protein YhjD AM348_RS17880 3e4290c6cabe6c46bea38807fd6d70ff 231 SUPERFAMILY SSF52540 1 212 7.59E-52 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17880 3e4290c6cabe6c46bea38807fd6d70ff 231 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 172 3.2E-39 T 28-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM348_RS17880 3e4290c6cabe6c46bea38807fd6d70ff 231 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 220 23.897 T 28-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM348_RS17880 3e4290c6cabe6c46bea38807fd6d70ff 231 Pfam PF13500 AAA domain 4 207 3.0E-29 T 28-03-2018 AM348_RS17880 3e4290c6cabe6c46bea38807fd6d70ff 231 PIRSF PIRSF006755 1 224 4.4E-62 T 28-03-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 AM348_RS17880 3e4290c6cabe6c46bea38807fd6d70ff 231 Gene3D G3DSA:3.40.50.300 2 216 1.7E-45 T 28-03-2018 AM348_RS13180 e33e845677758ce44a740e825bbd831d 661 Gene3D G3DSA:2.40.170.20 164 661 2.2E-79 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS13180 e33e845677758ce44a740e825bbd831d 661 Gene3D G3DSA:2.170.130.10 22 158 6.9E-38 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS13180 e33e845677758ce44a740e825bbd831d 661 Pfam PF00593 TonB dependent receptor 230 660 6.9E-58 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS13180 e33e845677758ce44a740e825bbd831d 661 SUPERFAMILY SSF56935 26 661 4.89E-128 T 28-03-2018 AM348_RS13180 e33e845677758ce44a740e825bbd831d 661 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 35 - T 28-03-2018 IPR010916 TonB box, conserved site AM348_RS13180 e33e845677758ce44a740e825bbd831d 661 Pfam PF07715 TonB-dependent Receptor Plug Domain 41 151 6.3E-29 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS15315 0ab1c19b6129c9d7247c1e3abe63c4fa 79 Pfam PF13996 YobH-like protein 2 71 5.4E-39 T 28-03-2018 IPR025611 YobH-like protein AM348_RS11670 2f0ea396b53b299dd89597c894586f68 213 Pfam PF00551 Formyl transferase 2 182 4.1E-67 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS11670 2f0ea396b53b299dd89597c894586f68 213 Gene3D G3DSA:3.40.50.170 2 199 2.4E-69 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS11670 2f0ea396b53b299dd89597c894586f68 213 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 28-03-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS11670 2f0ea396b53b299dd89597c894586f68 213 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 192 2.9E-82 T 28-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AM348_RS11670 2f0ea396b53b299dd89597c894586f68 213 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.629 T 28-03-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 AM348_RS11670 2f0ea396b53b299dd89597c894586f68 213 SUPERFAMILY SSF53328 2 206 1.14E-66 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS00570 9a645e2c45d47a7183a68d92aa2da20e 391 Pfam PF07690 Major Facilitator Superfamily 9 318 5.1E-39 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS00570 9a645e2c45d47a7183a68d92aa2da20e 391 SUPERFAMILY SSF103473 3 385 4.58E-62 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00570 9a645e2c45d47a7183a68d92aa2da20e 391 Gene3D G3DSA:1.20.1250.20 188 380 1.6E-24 T 28-03-2018 AM348_RS00570 9a645e2c45d47a7183a68d92aa2da20e 391 Gene3D G3DSA:1.20.1250.20 3 187 6.0E-25 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 163 254 7.0E-7 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 3024 3129 1.9E-12 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 3130 3238 5.1E-13 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2126 2236 5.8E-13 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2812 2914 1.3E-16 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2342 2450 7.5E-11 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1027 1137 1.4E-12 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1581 1693 4.7E-12 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 3346 3454 3.6E-9 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 3239 3345 2.1E-12 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1799 1907 4.1E-11 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2704 2811 6.3E-17 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1908 2016 1.1E-13 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2915 3023 2.5E-14 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 255 367 2.5E-16 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2595 2703 9.8E-12 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1470 1580 3.9E-11 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1138 1249 5.6E-15 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 1356 1469 9.1E-12 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.1290 2020 2125 1.7E-18 T 28-03-2018 AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 1696 1798 6.2E-14 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 3460 3565 2.5E-9 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 370 474 4.3E-12 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 918 1026 4.8E-10 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 2240 2341 6.1E-14 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 2451 2569 1.2E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 1253 1355 1.6E-12 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 812 916 2.0E-13 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 476 589 2.1E-11 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 697 810 4.6E-11 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS10205 4eb16130ad45da8ab7727280e88c4af1 3697 Gene3D G3DSA:2.60.40.10 591 695 3.9E-14 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS23175 3d51a07df93030b903b1822ec5bf8432 132 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 118 3.7E-36 T 28-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM348_RS23175 3d51a07df93030b903b1822ec5bf8432 132 Gene3D G3DSA:3.10.129.10 1 132 1.3E-35 T 28-03-2018 AM348_RS23175 3d51a07df93030b903b1822ec5bf8432 132 Pfam PF13279 Thioesterase-like superfamily 12 126 6.5E-17 T 28-03-2018 AM348_RS23175 3d51a07df93030b903b1822ec5bf8432 132 SUPERFAMILY SSF54637 3 129 9.88E-39 T 28-03-2018 IPR029069 HotDog domain AM348_RS23175 3d51a07df93030b903b1822ec5bf8432 132 PIRSF PIRSF003230 1 132 1.7E-22 T 28-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM348_RS23045 6afca663f5fb82e299cf886215aec24e 72 Pfam PF05321 Haemolysin expression modulating protein 13 69 2.1E-33 T 28-03-2018 IPR007985 Haemolysin expression modulating, HHA AM348_RS23045 6afca663f5fb82e299cf886215aec24e 72 Gene3D G3DSA:1.20.1280.40 6 71 4.1E-34 T 28-03-2018 IPR007985 Haemolysin expression modulating, HHA AM348_RS23045 6afca663f5fb82e299cf886215aec24e 72 SUPERFAMILY SSF68989 2 72 1.23E-31 T 28-03-2018 IPR007985 Haemolysin expression modulating, HHA AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 176 4.4E-49 T 28-03-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 Pfam PF01923 Cobalamin adenosyltransferase 3 166 1.4E-53 T 28-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 PIRSF PIRSF036411 1 332 1.1E-92 T 28-03-2018 IPR009221 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, bifunctional PduO AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 SUPERFAMILY SSF89028 1 177 4.12E-54 T 28-03-2018 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 Pfam PF03928 Haem-degrading 203 326 1.1E-25 T 28-03-2018 IPR005624 Haem-degrading AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 Gene3D G3DSA:1.20.1200.10 12 184 3.1E-52 T 28-03-2018 AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 SUPERFAMILY SSF143744 197 329 6.15E-35 T 28-03-2018 AM348_RS14005 1bfaf08f87a24fbdd9d0cbc00c1ce8ff 335 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 156 2.0E-44 T 28-03-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741 AM348_RS12920 59ae055399cc63147e72eb8e842d926a 206 Pfam PF00005 ABC transporter 18 154 2.8E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS12920 59ae055399cc63147e72eb8e842d926a 206 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS12920 59ae055399cc63147e72eb8e842d926a 206 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 197 4.7E-84 T 28-03-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 AM348_RS12920 59ae055399cc63147e72eb8e842d926a 206 SUPERFAMILY SSF52540 2 187 4.75E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12920 59ae055399cc63147e72eb8e842d926a 206 Gene3D G3DSA:3.40.50.300 1 201 7.9E-41 T 28-03-2018 AM348_RS12920 59ae055399cc63147e72eb8e842d926a 206 SMART SM00382 26 205 2.1E-5 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05760 f8429d6489ddee17025c028f5d0c412f 286 Gene3D G3DSA:3.20.20.70 1 285 7.4E-93 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS05760 f8429d6489ddee17025c028f5d0c412f 286 SUPERFAMILY SSF51569 3 283 1.61E-90 T 28-03-2018 AM348_RS05760 f8429d6489ddee17025c028f5d0c412f 286 PIRSF PIRSF001359 1 283 1.2E-89 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS05760 f8429d6489ddee17025c028f5d0c412f 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 3 282 1.1E-88 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS05760 f8429d6489ddee17025c028f5d0c412f 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 1.5E-78 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 Gene3D G3DSA:3.40.50.720 1 180 1.0E-34 T 28-03-2018 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 28-03-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 4.9E-51 T 28-03-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 1.5E-229 T 28-03-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 SUPERFAMILY SSF51735 4 173 4.56E-50 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PIRSF PIRSF000109 1 468 4.9E-241 T 28-03-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 28-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.5E-89 T 28-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.5E-89 T 28-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 28-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 28-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.5E-89 T 28-03-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 466 1.2E-133 T 28-03-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 SMART SM01350 179 467 4.7E-222 T 28-03-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 Gene3D G3DSA:1.20.5.320 435 468 7.6E-22 T 28-03-2018 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 Gene3D G3DSA:1.10.1040.10 181 434 9.1E-111 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS13840 2a50add3114674155996401b2ecfd0a9 468 SUPERFAMILY SSF48179 177 467 4.68E-131 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS08640 cd3cd892e023f67d6f641f9763235d93 223 PIRSF PIRSF009467 2 223 1.2E-65 T 28-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AM348_RS08640 cd3cd892e023f67d6f641f9763235d93 223 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 223 29.524 T 28-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AM348_RS08640 cd3cd892e023f67d6f641f9763235d93 223 Pfam PF01730 UreF 37 180 9.2E-33 T 28-03-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 AM348_RS20810 5f1284afb0f8e7ebc1a70e0e2481fa30 208 SUPERFAMILY SSF52499 3 202 2.22E-54 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS20810 5f1284afb0f8e7ebc1a70e0e2481fa30 208 Gene3D G3DSA:3.40.50.850 1 208 2.9E-44 T 28-03-2018 AM348_RS20810 5f1284afb0f8e7ebc1a70e0e2481fa30 208 Pfam PF00857 Isochorismatase family 14 165 2.1E-21 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 1.0E-155 T 28-03-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Gene3D G3DSA:3.40.50.10810 130 364 1.5E-26 T 28-03-2018 AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Gene3D G3DSA:3.40.50.300 484 611 7.8E-20 T 28-03-2018 AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Pfam PF00271 Helicase conserved C-terminal domain 495 601 8.4E-15 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 SUPERFAMILY SSF52540 124 361 1.04E-36 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 3.2E-19 T 28-03-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 29.126 T 28-03-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 Gene3D G3DSA:3.90.550.10 612 754 0.14 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 SUPERFAMILY SSF52540 480 649 4.14E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 SUPERFAMILY SSF52540 273 337 4.14E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 SMART SM00487 150 342 1.2E-21 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS01390 4668e734c44a1cdceb1c135d7c595230 968 SMART SM00490 517 601 1.4E-17 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS14910 098c299367eb2da95f49e68dffaf4f01 165 Pfam PF00210 Ferritin-like domain 7 143 5.0E-35 T 28-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM348_RS14910 098c299367eb2da95f49e68dffaf4f01 165 Gene3D G3DSA:1.20.1260.10 1 161 2.6E-41 T 28-03-2018 IPR012347 Ferritin-related AM348_RS14910 098c299367eb2da95f49e68dffaf4f01 165 SUPERFAMILY SSF47240 4 160 4.17E-55 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 SMART SM00354 1 73 7.4E-32 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 SUPERFAMILY SSF47413 2 58 9.57E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 4.9E-19 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 Gene3D G3DSA:3.40.50.2300 168 329 6.3E-19 T 28-03-2018 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 28-03-2018 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 SUPERFAMILY SSF53822 60 314 9.06E-43 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 312 2.4E-14 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 Gene3D G3DSA:1.10.260.40 1 56 7.6E-20 T 28-03-2018 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 Gene3D G3DSA:3.40.50.2300 57 167 9.4E-27 T 28-03-2018 AM348_RS01265 82b85c6e4f911e8b0b9da7ec502fe415 334 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 8.4E-156 T 28-03-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 Gene3D G3DSA:3.20.20.60 383 594 3.1E-5 T 28-03-2018 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 Gene3D G3DSA:1.20.1440.90 274 382 3.0E-24 T 28-03-2018 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 883 18.449 T 28-03-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 883 1.6E-293 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 SUPERFAMILY SSF51621 6 883 0.0 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 28-03-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 709 735 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 577 606 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 386 406 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 535 555 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 1.3E-68 T 28-03-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS04140 6c2689e90cb0d466836aabac88b348af 883 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 537 549 - T 28-03-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 SUPERFAMILY SSF51717 8 274 9.03E-106 T 28-03-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 28-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 Gene3D G3DSA:3.20.20.20 14 154 1.0E-60 T 28-03-2018 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 Gene3D G3DSA:3.20.20.20 155 276 1.9E-48 T 28-03-2018 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 28-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 Pfam PF00809 Pterin binding enzyme 18 257 7.3E-91 T 28-03-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 AM348_RS08070 4e8aea97fac676fb9912ee4e61b8f005 282 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 271 5.0E-104 T 28-03-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 AM348_RS10500 799735f846cb3e6ca15016c932ab5285 166 Pfam PF02631 RecX family 50 162 7.1E-30 T 28-03-2018 IPR003783 Regulatory protein RecX GO:0006282 AM348_RS10500 799735f846cb3e6ca15016c932ab5285 166 Hamap MF_01114 Regulatory protein RecX [recX]. 6 166 13.545 T 28-03-2018 IPR003783 Regulatory protein RecX GO:0006282 AM348_RS10500 799735f846cb3e6ca15016c932ab5285 166 Gene3D G3DSA:1.10.10.10 70 114 3.9E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10500 799735f846cb3e6ca15016c932ab5285 166 Gene3D G3DSA:1.10.10.10 116 166 1.5E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10500 799735f846cb3e6ca15016c932ab5285 166 Gene3D G3DSA:1.10.10.10 12 69 3.5E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 Gene3D G3DSA:1.20.58.220 6 119 9.4E-28 T 28-03-2018 AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 PIRSF PIRSF003107 7 226 1.9E-69 T 28-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 Pfam PF01895 PhoU domain 27 111 3.6E-21 T 28-03-2018 IPR026022 PhoU domain AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 Pfam PF01895 PhoU domain 128 213 2.0E-17 T 28-03-2018 IPR026022 PhoU domain AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 1.2E-73 T 28-03-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 SUPERFAMILY SSF109755 13 229 2.83E-71 T 28-03-2018 AM348_RS05325 71fce7f72e096bea6a9a9672db3e50a5 241 Gene3D G3DSA:1.20.58.220 120 238 1.5E-26 T 28-03-2018 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 148 7.8E-46 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 PRINTS PR00446 Hydrogen uptake protein signature 35 52 7.3E-23 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 PRINTS PR00446 Hydrogen uptake protein signature 56 66 7.3E-23 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 PRINTS PR00446 Hydrogen uptake protein signature 3 15 7.3E-23 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 PRINTS PR00446 Hydrogen uptake protein signature 15 26 7.3E-23 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 PRINTS PR00446 Hydrogen uptake protein signature 68 84 7.3E-23 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 SUPERFAMILY SSF53163 1 159 3.27E-46 T 28-03-2018 IPR023430 Peptidase HybD-like domain AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 Pfam PF01750 Hydrogenase maturation protease 20 147 1.7E-36 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 Gene3D G3DSA:3.40.50.1450 1 162 1.1E-55 T 28-03-2018 IPR023430 Peptidase HybD-like domain AM348_RS09000 dc117b3e18f9e29c0e9ecfd7d17c602f 164 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 3 153 2.3E-54 T 28-03-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 6.3E-70 T 28-03-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Gene3D G3DSA:3.30.300.10 134 233 1.8E-43 T 28-03-2018 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 SUPERFAMILY SSF55973 112 232 5.49E-52 T 28-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 PIRSF PIRSF000497 1 382 2.8E-176 T 28-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 28-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 SUPERFAMILY SSF55973 233 382 9.03E-72 T 28-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Gene3D G3DSA:3.30.300.10 246 383 4.1E-50 T 28-03-2018 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 5.1E-43 T 28-03-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 60.098 T 28-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 SUPERFAMILY SSF55973 3 109 1.29E-47 T 28-03-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Gene3D G3DSA:3.30.300.10 11 133 1.3E-44 T 28-03-2018 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 1.2E-45 T 28-03-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 28-03-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS09280 416cd10dd117da597327736fff05e7fb 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 3.2E-201 T 28-03-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 AM348_RS18710 fccda4d07495bfbf3f5a37d7b6358492 118 Pfam PF08965 Domain of unknown function (DUF1870) 1 118 5.9E-46 T 28-03-2018 IPR015060 Protein of unknown function DUF1870 AM348_RS18710 fccda4d07495bfbf3f5a37d7b6358492 118 Gene3D G3DSA:1.10.3100.10 1 118 8.7E-16 T 28-03-2018 IPR027910 YdiL-like domain AM348_RS18710 fccda4d07495bfbf3f5a37d7b6358492 118 SUPERFAMILY SSF47413 1 118 2.95E-37 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS19115 01269b524e62217e3f1826bb64ba5136 183 Gene3D G3DSA:3.40.109.10 1 183 5.0E-31 T 28-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM348_RS19115 01269b524e62217e3f1826bb64ba5136 183 SUPERFAMILY SSF55469 1 182 2.62E-38 T 28-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM348_RS19115 01269b524e62217e3f1826bb64ba5136 183 PIRSF PIRSF000232 1 182 2.7E-67 T 28-03-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like AM348_RS19115 01269b524e62217e3f1826bb64ba5136 183 Pfam PF00881 Nitroreductase family 9 161 1.1E-24 T 28-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM348_RS21150 85076e5754b6bac0b06b5d4001afe03d 526 SUPERFAMILY SSF53649 220 485 9.81E-19 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS21150 85076e5754b6bac0b06b5d4001afe03d 526 Pfam PF00884 Sulfatase 218 483 1.6E-40 T 28-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM348_RS21150 85076e5754b6bac0b06b5d4001afe03d 526 Gene3D G3DSA:3.40.720.10 210 491 7.2E-19 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS23330 34df6939727b00bb42bb7d8af36a1023 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 5.0E-78 T 28-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AM348_RS23330 34df6939727b00bb42bb7d8af36a1023 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.965 T 28-03-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 AM348_RS23330 34df6939727b00bb42bb7d8af36a1023 149 Pfam PF03477 ATP cone domain 50 136 4.4E-15 T 28-03-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 AM348_RS21800 68826ed2ea0df6a7b5108fd9688ed4b3 310 SUPERFAMILY SSF50891 174 288 4.93E-12 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS21800 68826ed2ea0df6a7b5108fd9688ed4b3 310 SMART SM00797 23 298 2.8E-143 T 28-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM348_RS21800 68826ed2ea0df6a7b5108fd9688ed4b3 310 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 310 1.4E-130 T 28-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM348_RS21800 68826ed2ea0df6a7b5108fd9688ed4b3 310 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 281 1.3E-91 T 28-03-2018 IPR003778 Carboxyltransferase domain, subdomain A and B AM348_RS09140 21d4fc33a99cdd9f4017653b01d87328 460 SUPERFAMILY SSF56281 12 129 1.05E-11 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS09140 21d4fc33a99cdd9f4017653b01d87328 460 Gene3D G3DSA:3.60.15.10 2 293 1.8E-10 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS09140 21d4fc33a99cdd9f4017653b01d87328 460 Pfam PF00753 Metallo-beta-lactamase superfamily 12 73 7.5E-6 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS16720 0beb93a9b7651811b4a169390c414d56 316 Gene3D G3DSA:3.40.50.620 1 155 2.2E-17 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS16720 0beb93a9b7651811b4a169390c414d56 316 Pfam PF00582 Universal stress protein family 3 146 2.8E-17 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS16720 0beb93a9b7651811b4a169390c414d56 316 Pfam PF00582 Universal stress protein family 174 300 1.6E-14 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS16720 0beb93a9b7651811b4a169390c414d56 316 Gene3D G3DSA:3.40.50.620 156 304 3.5E-24 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS16720 0beb93a9b7651811b4a169390c414d56 316 SUPERFAMILY SSF52402 155 307 2.6E-24 T 28-03-2018 AM348_RS16720 0beb93a9b7651811b4a169390c414d56 316 SUPERFAMILY SSF52402 4 154 1.42E-25 T 28-03-2018 AM348_RS11630 d86d1dc90205398ca3326c0c1d205341 457 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 1.5E-32 T 28-03-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 AM348_RS11630 d86d1dc90205398ca3326c0c1d205341 457 Gene3D G3DSA:2.40.50.140 4 105 1.2E-10 T 28-03-2018 AM348_RS11630 d86d1dc90205398ca3326c0c1d205341 457 Pfam PF02601 Exonuclease VII, large subunit 126 440 2.9E-103 T 28-03-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 AM348_RS11630 d86d1dc90205398ca3326c0c1d205341 457 Gene3D G3DSA:3.90.20.10 289 426 9.0E-5 T 28-03-2018 AM348_RS11630 d86d1dc90205398ca3326c0c1d205341 457 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.773 T 28-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS11630 d86d1dc90205398ca3326c0c1d205341 457 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 356 1.3E-140 T 28-03-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS16715 a5c142453ea412b7e03c9701275d831b 86 Pfam PF10749 Protein of unknown function (DUF2534) 5 82 1.2E-39 T 28-03-2018 IPR019685 Protein of unknown function DUF2534 AM348_RS05925 4ed78c046b6df345eb97ff530fcc1886 348 Gene3D G3DSA:3.40.50.2000 1 152 1.6E-33 T 28-03-2018 AM348_RS05925 4ed78c046b6df345eb97ff530fcc1886 348 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 324 3.2E-88 T 28-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM348_RS05925 4ed78c046b6df345eb97ff530fcc1886 348 SUPERFAMILY SSF53756 1 343 5.89E-101 T 28-03-2018 AM348_RS05925 4ed78c046b6df345eb97ff530fcc1886 348 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 343 2.8E-168 T 28-03-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 AM348_RS05925 4ed78c046b6df345eb97ff530fcc1886 348 Gene3D G3DSA:3.40.50.2000 163 348 2.3E-44 T 28-03-2018 AM348_RS19910 526a387779a8663b4433658f84d85539 251 Pfam PF00460 Flagella basal body rod protein 5 35 2.1E-10 T 28-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM348_RS19910 526a387779a8663b4433658f84d85539 251 SUPERFAMILY SSF117143 77 209 8.24E-16 T 28-03-2018 AM348_RS19910 526a387779a8663b4433658f84d85539 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 6.1E-31 T 28-03-2018 IPR020013 Fagellar hook-basal body protein, FlgE/F/G AM348_RS19910 526a387779a8663b4433658f84d85539 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 247 4.8E-21 T 28-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM348_RS19910 526a387779a8663b4433658f84d85539 251 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 28-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM348_RS05530 269524483edba848a343eb0da8cdae71 306 SUPERFAMILY SSF53613 1 302 2.81E-82 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS05530 269524483edba848a343eb0da8cdae71 306 Pfam PF00294 pfkB family carbohydrate kinase 2 294 2.7E-64 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS05530 269524483edba848a343eb0da8cdae71 306 Hamap MF_01987 Ribokinase [rbsK]. 1 301 25.696 T 28-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 3 299 3.4E-113 T 28-03-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 PRINTS PR00990 Ribokinase signature 32 51 6.8E-29 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 PRINTS PR00990 Ribokinase signature 173 188 6.8E-29 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 PRINTS PR00990 Ribokinase signature 5 26 6.8E-29 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 PRINTS PR00990 Ribokinase signature 104 117 6.8E-29 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 PRINTS PR00990 Ribokinase signature 217 228 6.8E-29 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS05530 269524483edba848a343eb0da8cdae71 306 Gene3D G3DSA:3.40.1190.20 1 306 3.6E-76 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Gene3D G3DSA:3.90.1170.30 1 46 1.3E-14 T 28-03-2018 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Gene3D G3DSA:3.90.1170.30 47 114 3.7E-4 T 28-03-2018 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 SUPERFAMILY SSF51230 2 93 2.36E-24 T 28-03-2018 IPR011053 Single hybrid motif AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 28-03-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Gene3D G3DSA:3.30.559.10 160 405 2.1E-90 T 28-03-2018 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Pfam PF00364 Biotin-requiring enzyme 5 76 1.3E-17 T 28-03-2018 IPR000089 Biotin/lipoyl attachment AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Gene3D G3DSA:4.10.320.10 115 159 6.1E-15 T 28-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 177 405 6.7E-81 T 28-03-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 407 4.9E-194 T 28-03-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 Pfam PF02817 e3 binding domain 114 147 2.9E-11 T 28-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 SUPERFAMILY SSF52777 177 406 8.01E-90 T 28-03-2018 AM348_RS21710 e08a2a166b1f1f7767d3d9e0f58a8032 407 SUPERFAMILY SSF47005 107 151 7.19E-11 T 28-03-2018 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 SUPERFAMILY SSF55073 258 408 1.88E-44 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 Gene3D G3DSA:3.30.450.20 115 245 4.3E-15 T 28-03-2018 AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 Pfam PF08448 PAS fold 143 244 1.2E-6 T 28-03-2018 IPR013656 PAS fold-4 AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 127 249 1.2E-12 T 28-03-2018 IPR000014 PAS domain AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 SMART SM00267 242 410 9.9E-63 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 Pfam PF00990 Diguanylate cyclase, GGDEF domain 253 406 1.5E-45 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 SUPERFAMILY SSF55785 148 251 4.83E-15 T 28-03-2018 IPR000014 PAS domain AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 249 408 2.8E-45 T 28-03-2018 IPR000160 GGDEF domain AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 Gene3D G3DSA:3.30.70.270 246 410 5.6E-51 T 28-03-2018 AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 SMART SM00091 3 70 27.0 T 28-03-2018 IPR000014 PAS domain AM348_RS16740 a268f513a2a4c0e38a7611db676b8717 410 SMART SM00091 129 198 9.8E-4 T 28-03-2018 IPR000014 PAS domain AM348_RS00440 06973005faed7cd4578f6279e76948d2 246 SUPERFAMILY SSF141523 42 159 5.49E-10 T 28-03-2018 AM348_RS00440 06973005faed7cd4578f6279e76948d2 246 Pfam PF03734 L,D-transpeptidase catalytic domain 45 159 9.7E-6 T 28-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM348_RS00440 06973005faed7cd4578f6279e76948d2 246 Gene3D G3DSA:2.40.440.10 39 174 1.5E-7 T 28-03-2018 AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 28-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 SUPERFAMILY SSF48498 89 197 1.34E-17 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 SUPERFAMILY SSF46689 9 85 2.14E-14 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 Gene3D G3DSA:1.10.357.10 67 200 5.1E-14 T 28-03-2018 AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 65 5.0E-12 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 8.6E-7 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 8.6E-7 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS19700 be73e75451152a5c47ffe496fe4cd318 200 Gene3D G3DSA:1.10.10.60 6 66 1.3E-15 T 28-03-2018 AM348_RS06575 841df2f2d3ac7036e9ac24a02a0f14c3 168 ProDom PD022010 DECARBOXYLASE ACID PHENOLIC P-COUMARIC LYASE 4.1.1.- PAD PADC FERULATE PROBABLE 9 152 7.0E-70 T 28-03-2018 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 AM348_RS06575 841df2f2d3ac7036e9ac24a02a0f14c3 168 PIRSF PIRSF011561 2 167 2.2E-79 T 28-03-2018 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 AM348_RS06575 841df2f2d3ac7036e9ac24a02a0f14c3 168 Gene3D G3DSA:2.40.128.20 10 162 1.7E-59 T 28-03-2018 IPR012674 Calycin AM348_RS06575 841df2f2d3ac7036e9ac24a02a0f14c3 168 SUPERFAMILY SSF50814 4 167 1.62E-72 T 28-03-2018 IPR012674 Calycin AM348_RS06575 841df2f2d3ac7036e9ac24a02a0f14c3 168 Pfam PF05870 Phenolic acid decarboxylase (PAD) 9 165 3.9E-87 T 28-03-2018 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 Gene3D G3DSA:3.40.50.1220 199 348 2.7E-49 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 201 334 5.9E-44 T 28-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 SUPERFAMILY SSF52467 165 362 8.61E-56 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 Gene3D G3DSA:3.40.50.970 6 198 1.3E-62 T 28-03-2018 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 SUPERFAMILY SSF52518 10 188 1.39E-59 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 427 446 - T 28-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 14 561 4.4E-201 T 28-03-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 Gene3D G3DSA:3.40.50.970 349 551 5.9E-51 T 28-03-2018 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 180 2.1E-57 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 SUPERFAMILY SSF52518 366 560 4.47E-65 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS05515 1b4a492738d7d844d7f152ad7ad058cc 562 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 538 9.0E-48 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 Gene3D G3DSA:3.20.20.120 116 321 2.1E-40 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 2 112 1.3E-28 T 28-03-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 28-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 SMART SM00922 130 223 1.4E-19 T 28-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 Gene3D G3DSA:3.30.390.10 1 115 2.4E-28 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 SUPERFAMILY SSF51604 119 310 5.24E-51 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 87 112 - T 28-03-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 SUPERFAMILY SSF54826 3 112 4.95E-34 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS16655 6ed6a320f433013c0332c0da8925d888 321 Pfam PF13378 Enolase C-terminal domain-like 133 295 1.4E-24 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS04390 0a36ce7e675171acc40e617690f2bb19 416 Pfam PF07690 Major Facilitator Superfamily 28 361 1.0E-25 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS04390 0a36ce7e675171acc40e617690f2bb19 416 Gene3D G3DSA:1.20.1250.20 1 200 3.9E-20 T 28-03-2018 AM348_RS04390 0a36ce7e675171acc40e617690f2bb19 416 Gene3D G3DSA:1.20.1250.20 201 415 2.1E-19 T 28-03-2018 AM348_RS04390 0a36ce7e675171acc40e617690f2bb19 416 SUPERFAMILY SSF103473 3 409 3.14E-47 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 Pfam PF03466 LysR substrate binding domain 93 292 1.1E-34 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 6.4E-21 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 Gene3D G3DSA:3.40.190.10 183 271 5.0E-19 T 28-03-2018 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 Gene3D G3DSA:3.40.190.10 94 182 3.0E-15 T 28-03-2018 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 SUPERFAMILY SSF53850 94 292 1.99E-29 T 28-03-2018 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.6E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.6E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.6E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 SUPERFAMILY SSF46785 7 92 7.55E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12075 61de3f619df944f3eed18886a056a6c7 294 Gene3D G3DSA:1.10.10.10 1 92 1.8E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03600 5aa076c916443e628e4e375322cf569c 165 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 165 25.523 T 28-03-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745 AM348_RS03600 5aa076c916443e628e4e375322cf569c 165 Gene3D G3DSA:3.40.1410.10 2 165 2.3E-44 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS03600 5aa076c916443e628e4e375322cf569c 165 Pfam PF04345 Chorismate lyase 19 165 1.2E-31 T 28-03-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745 AM348_RS03600 5aa076c916443e628e4e375322cf569c 165 SUPERFAMILY SSF64288 8 165 7.86E-46 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS02015 748089997c783f6f6c028edf615097f9 216 Pfam PF01810 LysE type translocator 21 208 7.1E-23 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 Pfam PF00005 ABC transporter 26 165 7.1E-25 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 Pfam PF00005 ABC transporter 346 489 1.6E-27 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 Gene3D G3DSA:3.40.50.300 2 293 6.6E-53 T 28-03-2018 AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 Gene3D G3DSA:3.40.50.300 326 562 3.1E-60 T 28-03-2018 AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 SMART SM00382 32 266 7.5E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 SMART SM00382 354 535 8.0E-16 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 SUPERFAMILY SSF52540 324 549 4.67E-60 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 SUPERFAMILY SSF52540 5 228 2.96E-53 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21265 26fba756f204a558bd3cd7e2f256c920 578 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS10275 b730753c28eb03d1e9864db32e6367cb 174 Pfam PF01584 CheW-like domain 29 162 1.8E-15 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS10275 b730753c28eb03d1e9864db32e6367cb 174 SUPERFAMILY SSF50341 26 163 2.44E-20 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS10275 b730753c28eb03d1e9864db32e6367cb 174 SMART SM00260 24 161 1.5E-5 T 28-03-2018 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 AM348_RS10275 b730753c28eb03d1e9864db32e6367cb 174 Gene3D G3DSA:2.40.50.180 47 138 1.5E-12 T 28-03-2018 AM348_RS16105 c11b809dd49c328936d635af8852a095 103 Gene3D G3DSA:1.10.10.10 1 82 2.3E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21220 b20a411f92e6bcad53ffe5b846a24e11 361 Gene3D G3DSA:1.10.1530.10 5 77 2.2E-22 T 28-03-2018 AM348_RS21220 b20a411f92e6bcad53ffe5b846a24e11 361 Pfam PF02615 Malate/L-lactate dehydrogenase 10 338 2.7E-109 T 28-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM348_RS21220 b20a411f92e6bcad53ffe5b846a24e11 361 Gene3D G3DSA:3.30.1370.60 78 280 6.8E-73 T 28-03-2018 AM348_RS21220 b20a411f92e6bcad53ffe5b846a24e11 361 Gene3D G3DSA:1.20.5.460 282 309 2.1E-13 T 28-03-2018 AM348_RS21220 b20a411f92e6bcad53ffe5b846a24e11 361 SUPERFAMILY SSF89733 6 347 6.67E-101 T 28-03-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0008152|GO:0016491|GO:0055114 AM348_RS01780 163d1c0d83e6f925905742133ce74a18 239 Pfam PF01048 Phosphorylase superfamily 15 218 2.8E-40 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS01780 163d1c0d83e6f925905742133ce74a18 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 2.3E-127 T 28-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM348_RS01780 163d1c0d83e6f925905742133ce74a18 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 28-03-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS01780 163d1c0d83e6f925905742133ce74a18 239 Gene3D G3DSA:3.40.50.1580 9 235 7.6E-57 T 28-03-2018 AM348_RS01780 163d1c0d83e6f925905742133ce74a18 239 SUPERFAMILY SSF53167 3 234 1.02E-93 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS01780 163d1c0d83e6f925905742133ce74a18 239 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.243 T 28-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM348_RS08010 f134484221dc8ae5230557a33f7bba46 323 Gene3D G3DSA:1.10.600.10 1 323 1.5E-104 T 28-03-2018 IPR008949 Isoprenoid synthase domain AM348_RS08010 f134484221dc8ae5230557a33f7bba46 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 28-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM348_RS08010 f134484221dc8ae5230557a33f7bba46 323 Pfam PF00348 Polyprenyl synthetase 30 263 3.7E-77 T 28-03-2018 IPR000092 Polyprenyl synthetase GO:0008299 AM348_RS08010 f134484221dc8ae5230557a33f7bba46 323 SUPERFAMILY SSF48576 6 322 8.35E-101 T 28-03-2018 IPR008949 Isoprenoid synthase domain AM348_RS08010 f134484221dc8ae5230557a33f7bba46 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 28-03-2018 IPR033749 Polyprenyl synthetase, conserved site AM348_RS06650 1c70b8cafec5fdbe102d2787acb5f7d8 85 Pfam PF00550 Phosphopantetheine attachment site 8 62 8.1E-6 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS06650 1c70b8cafec5fdbe102d2787acb5f7d8 85 SUPERFAMILY SSF47336 2 83 1.14E-10 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS06650 1c70b8cafec5fdbe102d2787acb5f7d8 85 Gene3D G3DSA:1.10.1200.10 2 85 7.8E-15 T 28-03-2018 AM348_RS22350 dd57215eb3b3805e8c902a96a11d8301 391 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 111 387 4.2E-81 T 28-03-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 AM348_RS22350 dd57215eb3b3805e8c902a96a11d8301 391 Pfam PF00425 chorismate binding enzyme 127 380 1.4E-66 T 28-03-2018 IPR015890 Chorismate-utilising enzyme, C-terminal AM348_RS22350 dd57215eb3b3805e8c902a96a11d8301 391 Gene3D G3DSA:3.60.120.10 1 391 4.3E-99 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS22350 dd57215eb3b3805e8c902a96a11d8301 391 SUPERFAMILY SSF56322 18 389 2.75E-85 T 28-03-2018 IPR005801 ADC synthase GO:0009058 AM348_RS19610 53182a31f08c8a3cebc0942d159ea1c3 309 Gene3D G3DSA:1.10.620.20 2 289 1.3E-76 T 28-03-2018 AM348_RS19610 53182a31f08c8a3cebc0942d159ea1c3 309 SUPERFAMILY SSF47240 27 270 4.38E-79 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS19610 53182a31f08c8a3cebc0942d159ea1c3 309 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 7 295 5.6E-155 T 28-03-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.14+1.14.13.149|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176 AM348_RS19610 53182a31f08c8a3cebc0942d159ea1c3 309 Pfam PF05138 Phenylacetic acid catabolic protein 17 291 5.9E-99 T 28-03-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 SUPERFAMILY SSF46785 5 60 5.74E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 Gene3D G3DSA:3.40.50.1360 78 238 1.0E-23 T 28-03-2018 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 SMART SM00420 6 58 1.0E-22 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 Pfam PF00455 DeoR C terminal sensor domain 76 230 2.0E-36 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 SUPERFAMILY SSF100950 75 234 4.19E-23 T 28-03-2018 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 62 1.5E-19 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-5 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-5 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 Hamap MF_01563 HTH-type transcriptional regulator UlaR [ulaR]. 1 251 69.595 T 28-03-2018 IPR023711 Transcription regulator HTH, UlaR GO:0005737|GO:0045892 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 SMART SM01134 74 232 3.8E-37 T 28-03-2018 AM348_RS02815 f470dc3808bdb961c294d915bd7cfda1 251 Gene3D G3DSA:1.10.10.10 1 77 2.3E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06825 8911c09ecc918a0978a641411ab6c9c1 89 Gene3D G3DSA:1.10.10.10 1 88 4.6E-6 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06825 8911c09ecc918a0978a641411ab6c9c1 89 SUPERFAMILY SSF46785 3 85 3.87E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11805 fc8efd142d835c62d9a46733b37180ce 191 Pfam PF00293 NUDIX domain 45 163 7.7E-10 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS11805 fc8efd142d835c62d9a46733b37180ce 191 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 3 185 1.4E-76 T 28-03-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AM348_RS11805 fc8efd142d835c62d9a46733b37180ce 191 SUPERFAMILY SSF55811 10 187 3.79E-49 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS11805 fc8efd142d835c62d9a46733b37180ce 191 Gene3D G3DSA:3.90.79.10 1 191 1.2E-37 T 28-03-2018 AM348_RS06435 7558b634345454a9c77d7640e34a0490 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.883 T 28-03-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AM348_RS06435 7558b634345454a9c77d7640e34a0490 280 Gene3D G3DSA:3.40.50.150 1 280 2.4E-91 T 28-03-2018 AM348_RS06435 7558b634345454a9c77d7640e34a0490 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS06435 7558b634345454a9c77d7640e34a0490 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 4.9E-117 T 28-03-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 AM348_RS06435 7558b634345454a9c77d7640e34a0490 280 SUPERFAMILY SSF53335 9 279 3.8E-100 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 52 331 4.5E-90 T 28-03-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 SUPERFAMILY SSF55604 401 474 1.7E-20 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 Pfam PF00367 phosphotransferase system, EIIB 405 436 2.6E-13 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 2.8E-234 T 28-03-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 7.6E-84 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 Gene3D G3DSA:3.30.1360.60 399 474 2.6E-27 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS19780 07e0041b7b5cf39f8abee4ce724f4c5b 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 378 460 1.1E-24 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS02595 98fce917c4ffa188814028e9ecb811a5 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 304 4.8E-43 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS02595 98fce917c4ffa188814028e9ecb811a5 333 Gene3D G3DSA:1.10.3470.10 29 310 6.5E-29 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS00825 ac02b587c88b3801b8d5d8f85ddf4b41 266 Gene3D G3DSA:3.40.50.1980 141 266 4.2E-23 T 28-03-2018 AM348_RS00825 ac02b587c88b3801b8d5d8f85ddf4b41 266 Gene3D G3DSA:3.40.50.1980 22 140 6.3E-30 T 28-03-2018 AM348_RS00825 ac02b587c88b3801b8d5d8f85ddf4b41 266 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 2 266 45.836 T 28-03-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 AM348_RS00825 ac02b587c88b3801b8d5d8f85ddf4b41 266 SUPERFAMILY SSF53807 25 262 9.03E-58 T 28-03-2018 AM348_RS00825 ac02b587c88b3801b8d5d8f85ddf4b41 266 Pfam PF01497 Periplasmic binding protein 26 217 1.6E-24 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 TIGRFAM TIGR00077 lspA: signal peptidase II 5 163 5.0E-60 T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 16.957 T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 Pfam PF01252 Signal peptidase (SPase) II 16 155 1.8E-36 T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 1.3E-19 T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.3E-19 T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.3E-19 T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS01570 a58c5be7e683a794f35dc8e4b38a1881 165 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 28-03-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 AM348_RS02045 fde26da80cada92658bf4c24fe736b9b 154 SUPERFAMILY SSF55729 1 142 3.44E-22 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS02045 fde26da80cada92658bf4c24fe736b9b 154 Gene3D G3DSA:3.40.630.30 2 143 1.9E-19 T 28-03-2018 AM348_RS02045 fde26da80cada92658bf4c24fe736b9b 154 Pfam PF00583 Acetyltransferase (GNAT) family 46 133 9.9E-14 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 Gene3D G3DSA:3.40.50.300 3 196 1.6E-35 T 28-03-2018 AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 9 453 1.0E-137 T 28-03-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 9 194 4.4E-21 T 28-03-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 Gene3D G3DSA:3.40.50.880 198 437 5.5E-21 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 SUPERFAMILY SSF52540 6 201 3.87E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 5 445 42.945 T 28-03-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 SUPERFAMILY SSF52317 249 453 6.25E-32 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS14080 5d46f60a80240093d9a5197b45b62cfc 459 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 252 444 2.5E-42 T 28-03-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 AM348_RS22485 54c183f10e463ae8209d1bde5bb6f6ae 370 SMART SM00849 108 314 3.8E-5 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22485 54c183f10e463ae8209d1bde5bb6f6ae 370 PIRSF PIRSF038896 12 354 2.1E-85 T 28-03-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 AM348_RS22485 54c183f10e463ae8209d1bde5bb6f6ae 370 Pfam PF12706 Beta-lactamase superfamily domain 120 314 7.7E-44 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22485 54c183f10e463ae8209d1bde5bb6f6ae 370 Gene3D G3DSA:3.60.15.10 75 367 1.0E-41 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22485 54c183f10e463ae8209d1bde5bb6f6ae 370 SUPERFAMILY SSF56281 206 350 1.57E-36 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS22485 54c183f10e463ae8209d1bde5bb6f6ae 370 SUPERFAMILY SSF56281 104 179 1.57E-36 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS14255 8cebff681be6694d3c21bea6656d006d 141 Gene3D G3DSA:3.40.30.10 1 141 1.0E-43 T 28-03-2018 AM348_RS14255 8cebff681be6694d3c21bea6656d006d 141 Pfam PF03960 ArsC family 7 114 4.9E-20 T 28-03-2018 IPR006660 Arsenate reductase-like AM348_RS14255 8cebff681be6694d3c21bea6656d006d 141 SUPERFAMILY SSF52833 3 137 1.04E-38 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS14255 8cebff681be6694d3c21bea6656d006d 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 3.0E-40 T 28-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 Gene3D G3DSA:3.40.50.620 9 221 3.4E-37 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 SUPERFAMILY SSF82829 228 313 2.25E-26 T 28-03-2018 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 357 402 2.4E-16 T 28-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 SUPERFAMILY SSF52402 4 227 5.95E-63 T 28-03-2018 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 Pfam PF09179 TilS substrate binding domain 246 309 1.4E-19 T 28-03-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 Pfam PF11734 TilS substrate C-terminal domain 357 428 3.0E-27 T 28-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 SMART SM00977 357 428 1.9E-26 T 28-03-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 16 197 2.3E-52 T 28-03-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 SUPERFAMILY SSF56037 319 427 4.45E-32 T 28-03-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 Pfam PF01171 PP-loop family 16 192 5.4E-59 T 28-03-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 AM348_RS00675 46a7b1797a70656b6f9b2e5033fc38a7 431 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 6 304 23.218 T 28-03-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 AM348_RS08015 54d5897687aaa40efefbf401b0fc9ae3 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.762 T 28-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08015 54d5897687aaa40efefbf401b0fc9ae3 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 28-03-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS08015 54d5897687aaa40efefbf401b0fc9ae3 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.7E-37 T 28-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08015 54d5897687aaa40efefbf401b0fc9ae3 103 SUPERFAMILY SSF141091 1 102 8.24E-37 T 28-03-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08015 54d5897687aaa40efefbf401b0fc9ae3 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 4.4E-45 T 28-03-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07135 7f1297fc277aefabb02d2e07f3892a37 268 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 28-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM348_RS07135 7f1297fc277aefabb02d2e07f3892a37 268 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 28-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM348_RS07135 7f1297fc277aefabb02d2e07f3892a37 268 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 21 250 1.8E-83 T 28-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM348_RS07135 7f1297fc277aefabb02d2e07f3892a37 268 Gene3D G3DSA:1.20.1080.10 2 260 1.2E-60 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS07135 7f1297fc277aefabb02d2e07f3892a37 268 Pfam PF01226 Formate/nitrite transporter 20 247 5.9E-57 T 28-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM348_RS16675 806c48efcfbf7ccf3d5219e6f3c281f1 76 Pfam PF00462 Glutaredoxin 9 63 8.2E-7 T 28-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM348_RS16675 806c48efcfbf7ccf3d5219e6f3c281f1 76 SUPERFAMILY SSF52833 6 66 1.02E-8 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS16675 806c48efcfbf7ccf3d5219e6f3c281f1 76 Gene3D G3DSA:3.40.30.10 5 69 1.4E-9 T 28-03-2018 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 SUPERFAMILY SSF46785 5 60 2.19E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 Pfam PF00455 DeoR C terminal sensor domain 82 236 3.1E-50 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 SMART SM01134 78 238 1.4E-66 T 28-03-2018 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 101 112 - T 28-03-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 Gene3D G3DSA:1.10.10.10 1 58 3.2E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 3.1E-16 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.5E-6 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.5E-6 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 SUPERFAMILY SSF100950 81 238 3.54E-34 T 28-03-2018 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 Gene3D G3DSA:3.40.50.1360 70 241 4.2E-41 T 28-03-2018 AM348_RS08235 dffdd85ef09f56cba68966290059ac1f 257 SMART SM00420 6 58 1.8E-17 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS03520 b3852f4c5eb721529ac3a63abfbfc57a 118 SUPERFAMILY SSF142906 1 115 2.22E-34 T 28-03-2018 AM348_RS03520 b3852f4c5eb721529ac3a63abfbfc57a 118 Pfam PF04237 YjbR 12 101 1.0E-17 T 28-03-2018 IPR007351 Uncharacterised protein YjbR AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 28-03-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 TIGRFAM TIGR00109 hemH: ferrochelatase 1 316 2.0E-124 T 28-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 Pfam PF00762 Ferrochelatase 5 316 1.8E-110 T 28-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 SUPERFAMILY SSF53800 4 316 7.19E-101 T 28-03-2018 AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 Gene3D G3DSA:3.40.50.1400 173 300 4.2E-41 T 28-03-2018 AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 Gene3D G3DSA:3.40.50.1400 1 172 1.2E-47 T 28-03-2018 AM348_RS22950 dcfa0a26774306bc409088af0ee1e302 320 Hamap MF_00323 Ferrochelatase [hemH]. 4 320 38.521 T 28-03-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 AM348_RS07270 f341008b574ed2a68cccc5b878cb49e2 272 SUPERFAMILY SSF54534 41 249 2.75E-64 T 28-03-2018 AM348_RS07270 f341008b574ed2a68cccc5b878cb49e2 272 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 161 246 4.8E-27 T 28-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM348_RS07270 f341008b574ed2a68cccc5b878cb49e2 272 Gene3D G3DSA:1.10.287.460 26 133 2.5E-28 T 28-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM348_RS07270 f341008b574ed2a68cccc5b878cb49e2 272 Gene3D G3DSA:3.10.50.40 134 250 2.3E-42 T 28-03-2018 AM348_RS07270 f341008b574ed2a68cccc5b878cb49e2 272 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 33 152 9.6E-36 T 28-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM348_RS00520 1f373c802d8a74992135f0b9154e1d18 262 Gene3D G3DSA:1.10.10.10 8 118 1.8E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00520 1f373c802d8a74992135f0b9154e1d18 262 SUPERFAMILY SSF46894 27 111 8.22E-14 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS00520 1f373c802d8a74992135f0b9154e1d18 262 SMART SM00862 34 111 8.6E-13 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS00520 1f373c802d8a74992135f0b9154e1d18 262 Pfam PF00486 Transcriptional regulatory protein, C terminal 37 111 2.1E-11 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS18645 ca23faf4123acfdc3eb18873af2bdbab 138 Pfam PF02657 Fe-S metabolism associated domain 12 132 2.3E-42 T 28-03-2018 IPR003808 Fe-S metabolism associated domain, SufE-like AM348_RS18645 ca23faf4123acfdc3eb18873af2bdbab 138 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 41.918 T 28-03-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 AM348_RS18645 ca23faf4123acfdc3eb18873af2bdbab 138 Gene3D G3DSA:3.90.1010.10 1 137 8.9E-47 T 28-03-2018 AM348_RS18645 ca23faf4123acfdc3eb18873af2bdbab 138 SUPERFAMILY SSF82649 3 135 9.94E-45 T 28-03-2018 AM348_RS01195 05e960bb69fd7b89676584dd3d7685a5 277 Pfam PF03799 Cell division protein FtsQ 131 248 7.4E-26 T 28-03-2018 IPR005548 Cell division protein FtsQ/DivIB AM348_RS01195 05e960bb69fd7b89676584dd3d7685a5 277 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 27 256 25.934 T 28-03-2018 IPR026579 Cell division protein FtsQ GO:0090529 AM348_RS01195 05e960bb69fd7b89676584dd3d7685a5 277 Pfam PF08478 POTRA domain, FtsQ-type 58 127 5.8E-20 T 28-03-2018 IPR013685 POTRA domain, FtsQ-type AM348_RS13405 8bacebc4f6f02b172f1acc2fffe44454 826 Pfam PF13954 PapC N-terminal domain 26 161 1.8E-35 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS13405 8bacebc4f6f02b172f1acc2fffe44454 826 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 289 299 - T 28-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM348_RS13405 8bacebc4f6f02b172f1acc2fffe44454 826 Pfam PF00577 Outer membrane usher protein 177 743 4.4E-181 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS13405 8bacebc4f6f02b172f1acc2fffe44454 826 Pfam PF13953 PapC C-terminal domain 753 813 5.8E-10 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS13405 8bacebc4f6f02b172f1acc2fffe44454 826 SUPERFAMILY SSF141729 49 153 7.06E-28 T 28-03-2018 AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 SUPERFAMILY SSF46785 18 84 7.15E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 SMART SM00345 23 82 7.8E-16 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 Pfam PF00155 Aminotransferase class I and II 168 424 2.8E-14 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 Gene3D G3DSA:1.10.10.10 16 84 1.2E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 SUPERFAMILY SSF53383 77 489 4.29E-78 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 Gene3D G3DSA:3.90.1150.10 396 489 2.3E-15 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 Gene3D G3DSA:3.40.640.10 150 395 1.4E-35 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS00300 d9486fb0df572a236b8c1f3e700a2439 489 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 3.3E-15 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 SUPERFAMILY SSF54506 2 273 9.62E-56 T 28-03-2018 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 4.8E-104 T 28-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 28-03-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 Gene3D G3DSA:3.10.310.10 1 124 2.6E-48 T 28-03-2018 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.673 T 28-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 Pfam PF01678 Diaminopimelate epimerase 3 123 9.4E-35 T 28-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 Pfam PF01678 Diaminopimelate epimerase 152 266 5.3E-34 T 28-03-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 AM348_RS04915 9809d0d33f7e1ea6ecf0b31e7042fdb8 274 Gene3D G3DSA:3.10.310.10 125 261 1.8E-51 T 28-03-2018 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 368 376 - T 28-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 PRINTS PR00131 Glycosyl hydrolase family 1 signature 389 400 6.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 PRINTS PR00131 Glycosyl hydrolase family 1 signature 368 376 6.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 PRINTS PR00131 Glycosyl hydrolase family 1 signature 410 427 6.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 PRINTS PR00131 Glycosyl hydrolase family 1 signature 302 316 6.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 PRINTS PR00131 Glycosyl hydrolase family 1 signature 435 447 6.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 SUPERFAMILY SSF51445 2 471 2.12E-160 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 Gene3D G3DSA:3.20.20.80 1 474 9.1E-155 T 28-03-2018 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 Pfam PF00232 Glycosyl hydrolase family 1 3 470 1.0E-133 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS10405 cae51928e474f446f4243d18a9ed8000 474 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 28-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AM348_RS12790 9d55e436c9d1f6be569e09f9577b5014 84 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 77 9.1E-11 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS12790 9d55e436c9d1f6be569e09f9577b5014 84 Gene3D G3DSA:3.10.20.30 1 84 9.6E-16 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS12790 9d55e436c9d1f6be569e09f9577b5014 84 SUPERFAMILY SSF54292 3 84 9.7E-22 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS12790 9d55e436c9d1f6be569e09f9577b5014 84 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 28-03-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 SUPERFAMILY SSF54197 3 113 1.24E-34 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 Gene3D G3DSA:3.30.428.10 2 112 4.4E-29 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 Pfam PF01230 HIT domain 12 109 2.5E-29 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 PRINTS PR00332 Histidine triad family signature 95 105 8.1E-20 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 PRINTS PR00332 Histidine triad family signature 6 22 8.1E-20 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 PRINTS PR00332 Histidine triad family signature 27 45 8.1E-20 T 28-03-2018 IPR001310 Histidine triad (HIT) protein AM348_RS19540 25be905e5ae3f07e5c01bfdbe2551ae1 119 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 28-03-2018 IPR019808 Histidine triad, conserved site AM348_RS07930 252f43084581506edb85ee9e56a29194 95 SUPERFAMILY SSF69754 1 95 8.11E-33 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS07930 252f43084581506edb85ee9e56a29194 95 Gene3D G3DSA:3.30.160.100 1 95 1.6E-32 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS07930 252f43084581506edb85ee9e56a29194 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 1.2E-36 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS07930 252f43084581506edb85ee9e56a29194 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 1.1E-26 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS00615 0137ed485470206f513504908b794a63 188 PIRSF PIRSF004682 1 188 2.6E-66 T 28-03-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AM348_RS00615 0137ed485470206f513504908b794a63 188 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 154 1.5E-37 T 28-03-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 AM348_RS00615 0137ed485470206f513504908b794a63 188 Pfam PF13242 HAD-hyrolase-like 109 179 2.9E-12 T 28-03-2018 AM348_RS00615 0137ed485470206f513504908b794a63 188 SUPERFAMILY SSF56784 3 184 7.58E-52 T 28-03-2018 IPR023214 HAD-like domain AM348_RS00615 0137ed485470206f513504908b794a63 188 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 180 1.7E-97 T 28-03-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 AM348_RS00615 0137ed485470206f513504908b794a63 188 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 155 1.3E-38 T 28-03-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 AM348_RS00615 0137ed485470206f513504908b794a63 188 Gene3D G3DSA:3.40.50.1000 4 188 6.3E-33 T 28-03-2018 IPR023214 HAD-like domain AM348_RS20900 e03387c7f9ab3fd0888c9d58631f4b9c 225 Pfam PF00857 Isochorismatase family 20 172 4.9E-22 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS20900 e03387c7f9ab3fd0888c9d58631f4b9c 225 SUPERFAMILY SSF52499 13 209 2.62E-47 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS20900 e03387c7f9ab3fd0888c9d58631f4b9c 225 Gene3D G3DSA:3.40.50.850 10 215 5.2E-39 T 28-03-2018 AM348_RS14630 5610a0f776424829ec51cc3ee80c764d 116 Gene3D G3DSA:1.20.5.320 34 91 4.4E-4 T 28-03-2018 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 SUPERFAMILY SSF51430 2 257 4.32E-81 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PIRSF PIRSF000097 102 265 1.7E-33 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PIRSF PIRSF000097 1 111 9.8E-34 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 Pfam PF00248 Aldo/keto reductase family 8 250 1.6E-48 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 2.0E-45 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 Gene3D G3DSA:3.20.20.100 1 262 4.5E-83 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS00580 f8ef17704817fd95fbce06dddfd690ba 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 28-03-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 AM348_RS00835 db076f6bc41d50e1cb19dc62be64c391 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 2.4E-20 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS00835 db076f6bc41d50e1cb19dc62be64c391 114 SUPERFAMILY SSF89360 8 103 1.84E-31 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS00835 db076f6bc41d50e1cb19dc62be64c391 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 36.99 T 28-03-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 AM348_RS00835 db076f6bc41d50e1cb19dc62be64c391 114 Gene3D G3DSA:2.60.300.12 8 114 2.5E-39 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS00835 db076f6bc41d50e1cb19dc62be64c391 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 28-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AM348_RS00835 db076f6bc41d50e1cb19dc62be64c391 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 6.1E-39 T 28-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 SUPERFAMILY SSF55021 79 162 2.55E-26 T 28-03-2018 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 SUPERFAMILY SSF55021 2 74 1.81E-22 T 28-03-2018 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 Gene3D G3DSA:3.30.70.260 2 87 6.7E-24 T 28-03-2018 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 Pfam PF01842 ACT domain 4 68 3.3E-15 T 28-03-2018 IPR002912 ACT domain AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 Pfam PF10369 Small subunit of acetolactate synthase 84 158 8.7E-24 T 28-03-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 Gene3D G3DSA:3.30.70.1150 88 161 2.8E-25 T 28-03-2018 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 1.1E-68 T 28-03-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM348_RS01270 d33b01c4a478bacc0159a34c4deee271 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 1.0E-36 T 28-03-2018 AM348_RS08165 b5162735e971b0729d5b3222e1614197 335 SUPERFAMILY SSF51679 6 327 2.94E-86 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS08165 b5162735e971b0729d5b3222e1614197 335 Pfam PF00296 Luciferase-like monooxygenase 8 305 5.2E-36 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS08165 b5162735e971b0729d5b3222e1614197 335 Gene3D G3DSA:3.20.20.30 6 329 1.7E-72 T 28-03-2018 AM348_RS08165 b5162735e971b0729d5b3222e1614197 335 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 8 327 3.1E-135 T 28-03-2018 IPR019949 Luciferase family oxidoreductase, group 1 AM348_RS05225 1f79655e00495c82248920a36d9654fd 330 Gene3D G3DSA:3.30.930.10 1 329 1.6E-39 T 28-03-2018 AM348_RS05225 1f79655e00495c82248920a36d9654fd 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 1.2E-198 T 28-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM348_RS05225 1f79655e00495c82248920a36d9654fd 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 46.204 T 28-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM348_RS05225 1f79655e00495c82248920a36d9654fd 330 SUPERFAMILY SSF55681 7 326 1.1E-97 T 28-03-2018 AM348_RS05225 1f79655e00495c82248920a36d9654fd 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 8.2E-94 T 28-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM348_RS05225 1f79655e00495c82248920a36d9654fd 330 PIRSF PIRSF001555 1 329 2.0E-151 T 28-03-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 AM348_RS00350 68f5835d456c86b9b01250b48a26a640 393 Gene3D G3DSA:1.10.150.130 90 206 6.9E-16 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS00350 68f5835d456c86b9b01250b48a26a640 393 Gene3D G3DSA:1.10.443.10 207 386 2.1E-25 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS00350 68f5835d456c86b9b01250b48a26a640 393 SUPERFAMILY SSF56349 101 382 6.47E-63 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS00350 68f5835d456c86b9b01250b48a26a640 393 Pfam PF00589 Phage integrase family 208 372 4.7E-21 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS00350 68f5835d456c86b9b01250b48a26a640 393 Pfam PF13356 Arm DNA-binding domain 3 87 3.2E-19 T 28-03-2018 IPR025166 Integrase, DNA-binding domain AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 Gene3D G3DSA:1.10.10.10 102 185 5.1E-8 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 SMART SM00421 130 187 0.0069 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 175 3.1E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 163 3.1E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 133 147 3.1E-5 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 SUPERFAMILY SSF46894 125 180 1.63E-10 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS22545 9770ad8e5eb70e1db7b7b653da4aac3b 192 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 179 6.0E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 73 397 2.0E-68 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 Gene3D G3DSA:3.40.50.1100 247 439 5.1E-29 T 28-03-2018 AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 440 277.538 T 28-03-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 106 120 - T 28-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 Gene3D G3DSA:3.40.50.1100 71 246 2.0E-27 T 28-03-2018 AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 SUPERFAMILY SSF53686 75 435 2.74E-55 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS05475 90da4ce676c15db4a187536c4f3d4202 440 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 7 436 7.5E-238 T 28-03-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 AM348_RS20200 7ca25767ab4fe3fc5205287ec259b9b0 75 Pfam PF13993 YccJ-like protein 9 75 1.7E-38 T 28-03-2018 IPR025600 YccJ-like protein AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Gene3D G3DSA:3.30.70.1450 140 232 1.3E-13 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 SUPERFAMILY SSF116726 148 226 1.26E-8 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Gene3D G3DSA:3.40.50.720 2 139 3.9E-27 T 28-03-2018 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 SUPERFAMILY SSF51735 232 376 5.59E-33 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Pfam PF02080 TrkA-C domain 391 451 5.5E-11 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Pfam PF02080 TrkA-C domain 157 225 1.6E-10 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.5E-36 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.5E-36 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.5E-36 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.5E-36 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.5E-36 T 28-03-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Gene3D G3DSA:3.30.70.1450 367 458 2.8E-14 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 SUPERFAMILY SSF51735 1 152 2.43E-36 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 SUPERFAMILY SSF116726 391 450 2.09E-7 T 28-03-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Pfam PF02254 TrkA-N domain 235 350 3.6E-26 T 28-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Pfam PF02254 TrkA-N domain 3 111 8.2E-30 T 28-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM348_RS07495 e0091e3d75cef4c5a893587c7a5bf445 458 Gene3D G3DSA:3.40.50.720 233 366 8.3E-25 T 28-03-2018 AM348_RS11580 1563db2fae336dbd84e52678d8e88da9 332 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 327 44.68 T 28-03-2018 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 AM348_RS11580 1563db2fae336dbd84e52678d8e88da9 332 Gene3D G3DSA:1.10.260.40 9 88 1.9E-12 T 28-03-2018 AM348_RS11580 1563db2fae336dbd84e52678d8e88da9 332 Pfam PF13464 Domain of unknown function (DUF4115) 250 324 1.9E-23 T 28-03-2018 IPR025194 Domain of unknown function DUF4115 AM348_RS11580 1563db2fae336dbd84e52678d8e88da9 332 SMART SM00530 18 79 2.4E-5 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS11580 1563db2fae336dbd84e52678d8e88da9 332 Pfam PF13413 Helix-turn-helix domain 18 78 2.6E-14 T 28-03-2018 AM348_RS11580 1563db2fae336dbd84e52678d8e88da9 332 SUPERFAMILY SSF47413 14 83 7.6E-8 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 1 303 2.0E-176 T 28-03-2018 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4 AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 PIRSF PIRSF001478 1 500 1.5E-257 T 28-03-2018 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4 AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 SUPERFAMILY SSF53743 1 326 1.05E-124 T 28-03-2018 IPR009015 L-fucose isomerase, N-terminal/central domain GO:0005737|GO:0005996|GO:0016861 AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 Pfam PF11762 L-arabinose isomerase C-terminal domain 363 476 6.8E-46 T 28-03-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 Hamap MF_00519 L-arabinose isomerase [araA]. 1 477 64.554 T 28-03-2018 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4 AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 SUPERFAMILY SSF50443 329 497 2.88E-71 T 28-03-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal AM348_RS01370 e530a08c3c5bc134687b82f1cd821103 500 Pfam PF02610 L-arabinose isomerase 5 359 2.0E-178 T 28-03-2018 IPR003762 L-arabinose isomerase GO:0008152|GO:0008733 KEGG: 00040+5.3.1.4 AM348_RS19970 9164815a7ef4d4927cbea7d6d0495b7d 402 Pfam PF07690 Major Facilitator Superfamily 20 187 1.9E-20 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19970 9164815a7ef4d4927cbea7d6d0495b7d 402 Pfam PF07690 Major Facilitator Superfamily 211 395 9.9E-11 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19970 9164815a7ef4d4927cbea7d6d0495b7d 402 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 41.698 T 28-03-2018 IPR022855 Multidrug resistance protein MdtH AM348_RS19970 9164815a7ef4d4927cbea7d6d0495b7d 402 SUPERFAMILY SSF103473 12 396 1.11E-51 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS19970 9164815a7ef4d4927cbea7d6d0495b7d 402 Gene3D G3DSA:1.20.1250.20 197 400 3.9E-18 T 28-03-2018 AM348_RS19970 9164815a7ef4d4927cbea7d6d0495b7d 402 Gene3D G3DSA:1.20.1250.20 8 195 2.1E-26 T 28-03-2018 AM348_RS11685 2ae5c06bbc32de2865caba3f37988d96 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 4.7E-89 T 28-03-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AM348_RS11685 2ae5c06bbc32de2865caba3f37988d96 208 SUPERFAMILY SSF53271 4 206 6.03E-65 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS11685 2ae5c06bbc32de2865caba3f37988d96 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.151 T 28-03-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 AM348_RS11685 2ae5c06bbc32de2865caba3f37988d96 208 Gene3D G3DSA:3.40.50.2020 1 206 2.6E-58 T 28-03-2018 AM348_RS11685 2ae5c06bbc32de2865caba3f37988d96 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 2.9E-64 T 28-03-2018 AM348_RS06630 153b406aa47f4692329409fcefbc1d73 117 SUPERFAMILY SSF54637 7 100 1.17E-13 T 28-03-2018 IPR029069 HotDog domain AM348_RS06630 153b406aa47f4692329409fcefbc1d73 117 Gene3D G3DSA:3.10.129.10 6 117 2.1E-20 T 28-03-2018 AM348_RS06630 153b406aa47f4692329409fcefbc1d73 117 Pfam PF07977 FabA-like domain 21 89 5.2E-5 T 28-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS06630 153b406aa47f4692329409fcefbc1d73 117 PIRSF PIRSF030962 1 117 3.4E-54 T 28-03-2018 IPR016962 Dehydrase, ECs4332, predicted KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS19515 78c051dea9abfdd617b4c4ad686a6c70 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 55.371 T 28-03-2018 IPR022987 Uncharacterised protein family UPF0227 AM348_RS19515 78c051dea9abfdd617b4c4ad686a6c70 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 3.1E-71 T 28-03-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AM348_RS19515 78c051dea9abfdd617b4c4ad686a6c70 180 SUPERFAMILY SSF53474 2 176 8.25E-9 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 Gene3D G3DSA:3.20.20.140 84 367 3.6E-50 T 28-03-2018 AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 TIGRFAM TIGR01224 hutI: imidazolonepropionase 33 406 5.3E-134 T 28-03-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 SUPERFAMILY SSF51556 68 367 5.96E-77 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 Pfam PF01979 Amidohydrolase family 66 384 4.2E-12 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 Gene3D G3DSA:2.30.40.10 8 83 7.3E-17 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 SUPERFAMILY SSF51338 8 68 8.39E-28 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 SUPERFAMILY SSF51338 369 406 8.39E-28 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS21405 c5e4db8dd1e245357016095876ac44f6 407 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 407 38.759 T 28-03-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 SMART SM00421 133 190 1.2E-21 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 Gene3D G3DSA:1.10.10.10 114 194 2.3E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 Pfam PF00196 Bacterial regulatory proteins, luxR family 135 188 7.9E-19 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 178 1.1E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 150 1.1E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 166 1.1E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 ProSitePatterns PS00622 LuxR-type HTH domain signature. 150 177 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 Pfam PF00072 Response regulator receiver domain 4 113 1.3E-22 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 Gene3D G3DSA:3.40.50.2300 3 113 1.5E-24 T 28-03-2018 AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 SUPERFAMILY SSF52172 6 162 1.71E-29 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS18585 1bd9e8f098ae2c7b80670ab609271063 194 SMART SM00448 2 113 2.4E-22 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS14000 669dddfcf7744b66b95facdbdfa0948b 461 Gene3D G3DSA:3.40.605.10 31 251 1.8E-34 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS14000 669dddfcf7744b66b95facdbdfa0948b 461 SUPERFAMILY SSF53720 34 452 2.09E-59 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS14000 669dddfcf7744b66b95facdbdfa0948b 461 Gene3D G3DSA:3.40.309.10 252 419 2.5E-22 T 28-03-2018 AM348_RS14000 669dddfcf7744b66b95facdbdfa0948b 461 Pfam PF00171 Aldehyde dehydrogenase family 34 290 1.1E-25 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS14000 669dddfcf7744b66b95facdbdfa0948b 461 PIRSF PIRSF036410 1 461 5.2E-211 T 28-03-2018 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 810 824 2.3E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 828 838 2.3E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 843 861 2.3E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 867 880 2.3E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Gene3D G3DSA:3.40.50.620 227 372 1.8E-12 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Gene3D G3DSA:3.30.565.10 725 883 5.0E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Pfam PF00512 His Kinase A (phospho-acceptor) domain 664 730 1.5E-10 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Gene3D G3DSA:3.40.50.300 21 147 1.7E-22 T 28-03-2018 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Gene3D G3DSA:3.30.450.40 500 652 4.0E-5 T 28-03-2018 IPR029016 GAF domain-like AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Gene3D G3DSA:1.20.120.620 401 499 7.9E-26 T 28-03-2018 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 SUPERFAMILY SSF47384 657 731 1.47E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 SMART SM00388 663 730 1.4E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Pfam PF13492 GAF domain 528 644 7.2E-8 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 230 1.6E-96 T 28-03-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Gene3D G3DSA:1.10.287.130 653 724 8.8E-11 T 28-03-2018 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 882 1.6E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 SUPERFAMILY SSF55874 719 885 2.23E-41 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 SUPERFAMILY SSF52402 253 367 2.85E-7 T 28-03-2018 AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 SMART SM00387 773 883 3.9E-33 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS21860 14e3c736acb3d7395d5a8ddf2ebc0bef 894 Pfam PF13493 Domain of unknown function (DUF4118) 403 507 1.7E-28 T 28-03-2018 IPR025201 Sensor protein KdpD, transmembrane domain AM348_RS20470 b686c14e13305b44426811f051a3224a 542 PIRSF PIRSF002741 2 542 2.2E-115 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS20470 b686c14e13305b44426811f051a3224a 542 Gene3D G3DSA:3.90.76.10 56 176 2.0E-35 T 28-03-2018 AM348_RS20470 b686c14e13305b44426811f051a3224a 542 Gene3D G3DSA:3.10.105.10 312 512 1.4E-56 T 28-03-2018 AM348_RS20470 b686c14e13305b44426811f051a3224a 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 461 6.1E-92 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS20470 b686c14e13305b44426811f051a3224a 542 SUPERFAMILY SSF53850 37 539 3.01E-149 T 28-03-2018 AM348_RS20470 b686c14e13305b44426811f051a3224a 542 Gene3D G3DSA:3.40.190.10 177 311 5.7E-44 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 2 677 0.0 T 28-03-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 Pfam PF00702 haloacid dehalogenase-like hydrolase 301 530 9.0E-37 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 Gene3D G3DSA:3.40.50.1000 444 577 3.9E-34 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 307 313 - T 28-03-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 Gene3D G3DSA:2.70.150.10 16 208 1.9E-23 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 680 41.372 T 28-03-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 Pfam PF00122 E1-E2 ATPase 118 282 2.7E-33 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF56784 293 317 6.71E-39 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF56784 377 404 6.71E-39 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF56784 435 559 6.71E-39 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 Gene3D G3DSA:3.40.1110.10 316 443 3.3E-25 T 28-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF81653 119 207 6.02E-21 T 28-03-2018 IPR008250 P-type ATPase, A domain Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 372 604 3.5E-49 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 337 2.2E-37 T 28-03-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.7E-24 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 551 3.7E-24 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 463 473 3.7E-24 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 305 319 3.7E-24 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 516 535 3.7E-24 T 28-03-2018 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF81660 316 450 3.6E-37 T 28-03-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF81665 619 662 2.48E-11 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF81665 30 103 2.48E-11 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS21850 fec06bfd83e4f1d12d13829fb8f49bc2 682 SUPERFAMILY SSF81665 208 299 2.48E-11 T 28-03-2018 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 6 256 3.1E-103 T 28-03-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 Pfam PF00106 short chain dehydrogenase 6 195 7.3E-54 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 Gene3D G3DSA:3.40.50.720 1 43 4.0E-8 T 28-03-2018 AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 Gene3D G3DSA:3.40.50.720 44 256 6.4E-58 T 28-03-2018 AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.5E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 5.5E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 5.5E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 5.5E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 5.5E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 5.5E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 SUPERFAMILY SSF51735 1 255 5.88E-73 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 6.4E-15 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 6.4E-15 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS17430 5f9bcb3ae8567be2c87b64467e2a1295 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 6.4E-15 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS21400 da634db922d9fc208b354fbbc1bf84b6 313 TIGRFAM TIGR01227 hutG: formimidoylglutamase 12 308 3.7E-87 T 28-03-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 AM348_RS21400 da634db922d9fc208b354fbbc1bf84b6 313 PIRSF PIRSF036979 23 312 6.2E-26 T 28-03-2018 IPR006035 Ureohydrolase GO:0046872 AM348_RS21400 da634db922d9fc208b354fbbc1bf84b6 313 Pfam PF00491 Arginase family 45 308 1.2E-52 T 28-03-2018 IPR006035 Ureohydrolase GO:0046872 AM348_RS21400 da634db922d9fc208b354fbbc1bf84b6 313 Gene3D G3DSA:3.40.800.10 2 313 1.8E-75 T 28-03-2018 AM348_RS21400 da634db922d9fc208b354fbbc1bf84b6 313 SUPERFAMILY SSF52768 11 312 9.71E-76 T 28-03-2018 AM348_RS21400 da634db922d9fc208b354fbbc1bf84b6 313 Hamap MF_00737 Formimidoylglutamase [hutG]. 7 310 42.234 T 28-03-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 SUPERFAMILY SSF51556 130 431 1.33E-195 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 SUPERFAMILY SSF51556 480 567 1.33E-195 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 Gene3D G3DSA:2.30.40.10 65 142 5.1E-17 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 Pfam PF01979 Amidohydrolase family 125 453 5.4E-84 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 SUPERFAMILY SSF51338 416 477 1.73E-6 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 334 350 1.2E-34 T 28-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 295 312 1.2E-34 T 28-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 427 440 1.2E-34 T 28-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 401 416 1.2E-34 T 28-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 119 1.7E-56 T 28-03-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 Hamap MF_01953 Urease subunit alpha [ureC]. 2 567 56.611 T 28-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 ProSitePatterns PS00145 Urease active site. 317 333 - T 28-03-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 567 2.4E-292 T 28-03-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 ProSitePatterns PS01120 Urease nickel ligands signature. 127 140 - T 28-03-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 SUPERFAMILY SSF51338 2 177 2.88E-64 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 Gene3D G3DSA:3.20.20.140 422 553 4.0E-41 T 28-03-2018 AM348_RS08650 709ab7ac510898d95d6c0b8e3aa9240e 567 Gene3D G3DSA:3.20.20.140 143 421 1.2E-163 T 28-03-2018 AM348_RS17575 d91b8fa63e61187d4f1880b928c0b9c6 160 Gene3D G3DSA:3.40.630.30 27 156 1.3E-16 T 28-03-2018 AM348_RS17575 d91b8fa63e61187d4f1880b928c0b9c6 160 Pfam PF13673 Acetyltransferase (GNAT) domain 89 149 3.0E-8 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS17575 d91b8fa63e61187d4f1880b928c0b9c6 160 SUPERFAMILY SSF55729 36 147 5.23E-12 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS23375 b1abf098864ab63d6c7376b1852be5a9 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 344 6.7E-166 T 28-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM348_RS23375 b1abf098864ab63d6c7376b1852be5a9 356 Pfam PF02547 Queuosine biosynthesis protein 4 343 2.1E-132 T 28-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM348_RS23375 b1abf098864ab63d6c7376b1852be5a9 356 Gene3D G3DSA:3.40.1780.10 1 128 9.3E-31 T 28-03-2018 AM348_RS23375 b1abf098864ab63d6c7376b1852be5a9 356 Gene3D G3DSA:3.40.1780.10 175 344 1.2E-65 T 28-03-2018 AM348_RS23375 b1abf098864ab63d6c7376b1852be5a9 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 47.591 T 28-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM348_RS23375 b1abf098864ab63d6c7376b1852be5a9 356 SUPERFAMILY SSF111337 1 343 4.97E-138 T 28-03-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 Pfam PF00890 FAD binding domain 3 431 1.4E-31 T 28-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 Gene3D G3DSA:3.90.700.10 254 398 1.1E-28 T 28-03-2018 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 SUPERFAMILY SSF51905 2 191 3.42E-35 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 SUPERFAMILY SSF51905 364 455 3.42E-35 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 Gene3D G3DSA:3.50.50.60 1 230 1.6E-28 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 SUPERFAMILY SSF56425 234 395 2.02E-25 T 28-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21910 a1be2111fb7b732443745eb1c592a7c7 467 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 2 460 1.0E-202 T 28-03-2018 IPR012831 Precorrin 3B synthase CobZ AM348_RS11495 5e5f6c8c5e066e2721f2e2cd0280057e 243 SUPERFAMILY SSF75217 4 164 3.79E-39 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS11495 5e5f6c8c5e066e2721f2e2cd0280057e 243 Pfam PF00588 SpoU rRNA Methylase family 5 154 1.7E-33 T 28-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM348_RS11495 5e5f6c8c5e066e2721f2e2cd0280057e 243 PIRSF PIRSF004808 1 243 3.1E-78 T 28-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS11495 5e5f6c8c5e066e2721f2e2cd0280057e 243 Gene3D G3DSA:3.40.1280.10 1 165 1.2E-43 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS11495 5e5f6c8c5e066e2721f2e2cd0280057e 243 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 241 8.9E-95 T 28-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS06925 586b0a3af05e46d9929d4cc166943b9d 108 SMART SM00450 7 102 1.6E-19 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS06925 586b0a3af05e46d9929d4cc166943b9d 108 Pfam PF00581 Rhodanese-like domain 9 98 6.4E-15 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS06925 586b0a3af05e46d9929d4cc166943b9d 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 31.047 T 28-03-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM348_RS06925 586b0a3af05e46d9929d4cc166943b9d 108 Gene3D G3DSA:3.40.250.10 1 108 9.0E-27 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS06925 586b0a3af05e46d9929d4cc166943b9d 108 SUPERFAMILY SSF52821 1 100 9.3E-29 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 SUPERFAMILY SSF52540 3 248 3.26E-62 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 PIRSF PIRSF037116 1 252 1.4E-139 T 28-03-2018 IPR012700 Phosphonate C-P lyase system, PhnK AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 3 250 1.2E-121 T 28-03-2018 IPR012700 Phosphonate C-P lyase system, PhnK AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 Gene3D G3DSA:3.40.50.300 2 252 1.3E-62 T 28-03-2018 AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 SMART SM00382 30 223 1.3E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 Pfam PF00005 ABC transporter 22 173 1.1E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03285 0191ab38d08cd2c5aed53a670a8ad8d1 252 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 SMART SM00859 3 123 1.2E-24 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 145 354 9.6E-61 T 28-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 PIRSF PIRSF000148 1 368 2.2E-71 T 28-03-2018 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 Gene3D G3DSA:3.30.360.10 145 351 4.7E-60 T 28-03-2018 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 SUPERFAMILY SSF55347 135 355 2.26E-78 T 28-03-2018 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 3.2E-24 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 SUPERFAMILY SSF51735 1 148 2.68E-55 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.528 T 28-03-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 28-03-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 Gene3D G3DSA:3.40.50.720 1 144 1.4E-17 T 28-03-2018 AM348_RS06890 c6f691190f28eaf51b8cffa8b8300868 368 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 1.2E-225 T 28-03-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS02790 e9e8e6849665276dcac266f430ad6ea5 216 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 206 2.8E-27 T 28-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS02790 e9e8e6849665276dcac266f430ad6ea5 216 Gene3D G3DSA:3.20.20.70 1 216 6.0E-27 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS02790 e9e8e6849665276dcac266f430ad6ea5 216 SUPERFAMILY SSF51366 2 215 2.71E-41 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS02790 e9e8e6849665276dcac266f430ad6ea5 216 SMART SM00934 5 207 8.4E-36 T 28-03-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 5.1E-43 T 28-03-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 PIRSF PIRSF000161 4 272 4.0E-91 T 28-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 1.6E-41 T 28-03-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 35.072 T 28-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 Gene3D G3DSA:3.30.360.10 130 238 3.6E-35 T 28-03-2018 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 28-03-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 SUPERFAMILY SSF51735 240 271 6.5E-52 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 SUPERFAMILY SSF51735 5 130 6.5E-52 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 SUPERFAMILY SSF55347 131 240 1.7E-37 T 28-03-2018 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 269 4.4E-111 T 28-03-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS01540 d6fddf96b103d984ed5e713b59aa1e18 273 Gene3D G3DSA:3.40.50.720 1 125 4.9E-29 T 28-03-2018 AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.7E-30 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.7E-30 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-30 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.7E-30 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.7E-30 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.7E-30 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 Gene3D G3DSA:3.40.50.720 2 269 3.2E-49 T 28-03-2018 AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 Pfam PF00106 short chain dehydrogenase 7 195 6.1E-42 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 SUPERFAMILY SSF51735 2 258 2.77E-54 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 3.2E-5 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11390 3b24b7873a652daf3c04a3915c8f4476 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.2E-5 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03575 dd022fb08b4d48a87a4eb999c2db446b 439 Pfam PF01554 MatE 241 380 1.7E-10 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS03575 dd022fb08b4d48a87a4eb999c2db446b 439 Pfam PF01554 MatE 17 177 1.8E-34 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS03575 dd022fb08b4d48a87a4eb999c2db446b 439 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 410 3.4E-101 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS17280 9f2b2f9eb5f2a6011ceba205bec32b0b 436 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 20 423 9.2E-127 T 28-03-2018 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS17280 9f2b2f9eb5f2a6011ceba205bec32b0b 436 Pfam PF07690 Major Facilitator Superfamily 18 305 4.9E-52 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17280 9f2b2f9eb5f2a6011ceba205bec32b0b 436 SUPERFAMILY SSF103473 6 423 1.83E-76 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17280 9f2b2f9eb5f2a6011ceba205bec32b0b 436 Gene3D G3DSA:1.20.1250.20 6 207 3.4E-37 T 28-03-2018 AM348_RS17280 9f2b2f9eb5f2a6011ceba205bec32b0b 436 Gene3D G3DSA:1.20.1250.20 216 431 7.4E-25 T 28-03-2018 AM348_RS17280 9f2b2f9eb5f2a6011ceba205bec32b0b 436 PIRSF PIRSF002808 3 426 9.9E-38 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS05715 e560316925a08c7223402d037c26b4cb 454 SMART SM00382 24 454 3.3E-4 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05715 e560316925a08c7223402d037c26b4cb 454 SUPERFAMILY SSF52540 320 446 1.92E-22 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05715 e560316925a08c7223402d037c26b4cb 454 SUPERFAMILY SSF52540 262 278 1.92E-22 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05715 e560316925a08c7223402d037c26b4cb 454 SUPERFAMILY SSF52540 1 227 1.92E-22 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05715 e560316925a08c7223402d037c26b4cb 454 Pfam PF13175 AAA ATPase domain 1 440 1.1E-25 T 28-03-2018 AM348_RS05715 e560316925a08c7223402d037c26b4cb 454 Gene3D G3DSA:3.40.50.300 1 451 1.4E-25 T 28-03-2018 AM348_RS01160 15bad32be1c627b215bafd160ab4cb37 64 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 59 19.869 T 28-03-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AM348_RS01160 15bad32be1c627b215bafd160ab4cb37 64 Gene3D G3DSA:3.30.50.10 2 60 6.1E-29 T 28-03-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 AM348_RS01160 15bad32be1c627b215bafd160ab4cb37 64 Pfam PF03884 DNA gyrase inhibitor YacG 7 55 3.5E-25 T 28-03-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 AM348_RS01160 15bad32be1c627b215bafd160ab4cb37 64 SUPERFAMILY SSF57716 3 62 4.7E-23 T 28-03-2018 AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 1.3E-21 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 6.5E-22 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 3.3E-8 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 3.3E-8 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 3.3E-8 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 41 56 - T 28-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 SUPERFAMILY SSF55594 4 90 3.53E-23 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 28-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM348_RS07915 e8c523c0458481453ef5f16517205dc5 90 Gene3D G3DSA:3.30.1340.10 1 89 5.5E-22 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS04245 fbee5142ab3f59d65be7eb064c388b5d 474 Gene3D G3DSA:1.20.1250.20 10 238 1.0E-9 T 28-03-2018 AM348_RS04245 fbee5142ab3f59d65be7eb064c388b5d 474 SUPERFAMILY SSF103473 27 460 1.22E-31 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS04245 fbee5142ab3f59d65be7eb064c388b5d 474 Gene3D G3DSA:1.20.1250.20 242 466 1.6E-23 T 28-03-2018 AM348_RS04245 fbee5142ab3f59d65be7eb064c388b5d 474 Pfam PF13347 MFS/sugar transport protein 26 456 4.6E-77 T 28-03-2018 AM348_RS04245 fbee5142ab3f59d65be7eb064c388b5d 474 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 24 467 3.9E-82 T 28-03-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 AM348_RS19925 b6eb4c5215a72d3a60f2c3a2ea36e91e 134 Pfam PF00460 Flagella basal body rod protein 7 36 6.7E-9 T 28-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM348_RS19925 b6eb4c5215a72d3a60f2c3a2ea36e91e 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 28-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM348_RS19925 b6eb4c5215a72d3a60f2c3a2ea36e91e 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 5.3E-51 T 28-03-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 AM348_RS19925 b6eb4c5215a72d3a60f2c3a2ea36e91e 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 131 3.4E-12 T 28-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM348_RS10915 5af076234318bea05473c12ed5c50bc8 384 Gene3D G3DSA:1.20.1600.10 84 335 1.3E-29 T 28-03-2018 AM348_RS10915 5af076234318bea05473c12ed5c50bc8 384 Pfam PF00529 HlyD membrane-fusion protein of T1SS 66 355 3.6E-7 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS10915 5af076234318bea05473c12ed5c50bc8 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 288 5.6E-14 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS10915 5af076234318bea05473c12ed5c50bc8 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 370 5.8E-82 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS10915 5af076234318bea05473c12ed5c50bc8 384 SUPERFAMILY SSF111369 48 295 3.92E-81 T 28-03-2018 AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 SUPERFAMILY SSF52540 208 453 4.52E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Pfam PF00270 DEAD/DEAH box helicase 293 433 1.6E-18 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Pfam PF17191 RecG wedge domain 14 171 2.4E-21 T 28-03-2018 IPR033454 RecG, wedge domain AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 SMART SM00487 265 459 2.3E-30 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 SUPERFAMILY SSF52540 508 653 3.39E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 SUPERFAMILY SSF52540 292 342 3.39E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Gene3D G3DSA:3.40.50.300 457 630 9.7E-27 T 28-03-2018 AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 664 7.3E-250 T 28-03-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Gene3D G3DSA:3.40.50.300 250 456 5.1E-35 T 28-03-2018 AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Gene3D G3DSA:2.40.50.140 53 141 1.3E-11 T 28-03-2018 AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 SUPERFAMILY SSF50249 9 176 4.8E-43 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 SMART SM00490 505 589 1.1E-21 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Pfam PF00271 Helicase conserved C-terminal domain 480 588 5.6E-17 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS05785 1fcacc5e6779987bfbf905b886b3f845 693 Gene3D G3DSA:1.10.150.20 3 52 4.3E-4 T 28-03-2018 AM348_RS02275 2a0194fdaf6adb874f7c52cc3dd76c17 124 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 3 110 1.3E-24 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS02275 2a0194fdaf6adb874f7c52cc3dd76c17 124 Gene3D G3DSA:2.40.33.40 2 120 4.7E-24 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS02275 2a0194fdaf6adb874f7c52cc3dd76c17 124 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 7 110 1.0E-51 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS02275 2a0194fdaf6adb874f7c52cc3dd76c17 124 SUPERFAMILY SSF141530 2 119 4.58E-27 T 28-03-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 Gene3D G3DSA:3.40.50.1000 1 270 9.3E-48 T 28-03-2018 IPR023214 HAD-like domain AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 4.1E-76 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 5.1E-68 T 28-03-2018 IPR023214 HAD-like domain AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 3.2E-32 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 ProSitePatterns PS01229 Hypothetical cof family signature 2. 218 240 - T 28-03-2018 AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 28-03-2018 AM348_RS05410 9f6748f9cf333ac66b247c40b90bba08 270 SUPERFAMILY SSF56784 1 269 2.07E-76 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04450 62dccfc9b4401a86ce24ed386da3505f 275 Gene3D G3DSA:3.40.225.10 4 256 2.1E-48 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS04450 62dccfc9b4401a86ce24ed386da3505f 275 TIGRFAM TIGR02624 rhamnu_1P_ald: rhamnulose-1-phosphate aldolase 1 271 4.0E-135 T 28-03-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 AM348_RS04450 62dccfc9b4401a86ce24ed386da3505f 275 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 238 1.1E-35 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS04450 62dccfc9b4401a86ce24ed386da3505f 275 Hamap MF_00770 Rhamnulose-1-phosphate aldolase [rhaD]. 1 272 57.658 T 28-03-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 AM348_RS04450 62dccfc9b4401a86ce24ed386da3505f 275 SUPERFAMILY SSF53639 1 271 9.81E-74 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS04450 62dccfc9b4401a86ce24ed386da3505f 275 SMART SM01007 11 239 8.4E-33 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS07775 de53c687c333e9a9e0d984c3aac7e86c 88 Gene3D G3DSA:3.30.1660.10 23 88 4.1E-25 T 28-03-2018 IPR025543 Dodecin-like AM348_RS07775 de53c687c333e9a9e0d984c3aac7e86c 88 Pfam PF07338 Protein of unknown function (DUF1471) 35 88 2.2E-22 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS07775 de53c687c333e9a9e0d984c3aac7e86c 88 SUPERFAMILY SSF159871 3 88 3.53E-25 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 107 2.7E-16 T 28-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 Gene3D G3DSA:2.40.110.10 120 217 7.6E-28 T 28-03-2018 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 Gene3D G3DSA:1.20.140.10 218 383 2.2E-53 T 28-03-2018 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 28-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 SUPERFAMILY SSF47203 226 381 4.19E-50 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 PIRSF PIRSF016578 234 381 3.1E-10 T 28-03-2018 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 PIRSF PIRSF016578 10 96 0.0024 T 28-03-2018 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 PIRSF PIRSF016578 135 193 8.5 T 28-03-2018 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 376 1.8E-45 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 SUPERFAMILY SSF56645 1 228 2.49E-50 T 28-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 Gene3D G3DSA:1.10.540.10 1 114 1.7E-18 T 28-03-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 28-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM348_RS18740 65ad63773e1112e48bd8fb70aad1f7eb 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 216 4.1E-22 T 28-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.804 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.1E-71 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.1E-71 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.1E-71 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.1E-71 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.1E-71 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.1E-71 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 8 301 2.8E-178 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 Gene3D G3DSA:1.20.58.180 216 294 2.1E-32 T 28-03-2018 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 SUPERFAMILY SSF55681 8 292 3.79E-134 T 28-03-2018 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 Gene3D G3DSA:3.30.930.10 1 214 2.4E-87 T 28-03-2018 AM348_RS06185 96bffd96e3ed198e77712e84bdb2df8d 303 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 3.1E-150 T 28-03-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Gene3D G3DSA:3.30.830.10 517 722 2.2E-13 T 28-03-2018 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Gene3D G3DSA:3.30.830.10 21 268 3.3E-70 T 28-03-2018 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 SUPERFAMILY SSF63411 33 263 4.25E-51 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Gene3D G3DSA:3.30.830.10 272 502 2.9E-57 T 28-03-2018 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 SUPERFAMILY SSF63411 265 502 2.38E-65 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Pfam PF16187 Middle or third domain of peptidase_M16 400 676 1.7E-52 T 28-03-2018 IPR032632 Peptidase M16, middle/third domain AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Pfam PF00675 Insulinase (Peptidase family M16) 54 191 6.2E-37 T 28-03-2018 IPR011765 Peptidase M16, N-terminal AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Gene3D G3DSA:3.30.830.10 723 962 1.4E-42 T 28-03-2018 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Pfam PF05193 Peptidase M16 inactive domain 681 856 4.2E-14 T 28-03-2018 IPR007863 Peptidase M16, C-terminal AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 Pfam PF05193 Peptidase M16 inactive domain 216 392 1.3E-19 T 28-03-2018 IPR007863 Peptidase M16, C-terminal AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 SUPERFAMILY SSF63411 735 957 6.63E-45 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 75 98 - T 28-03-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 AM348_RS09790 3c97b3f611ca0f61f43b8592515fa5ec 962 SUPERFAMILY SSF63411 504 729 1.41E-44 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 Gene3D G3DSA:3.20.20.210 3 385 5.3E-140 T 28-03-2018 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 PIRSF PIRSF000382 2 753 0.0 T 28-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 426 749 1.4E-160 T 28-03-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 Gene3D G3DSA:3.20.20.210 386 753 1.5E-127 T 28-03-2018 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 SUPERFAMILY SSF51726 5 389 5.49E-114 T 28-03-2018 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 312 1.7E-125 T 28-03-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 SUPERFAMILY SSF51726 391 752 6.02E-119 T 28-03-2018 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 752 0.0 T 28-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS04830 2151177dc0e152f5d68185d9d4db2e71 753 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 753 37.367 T 28-03-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS04445 0b0d530cbcd690e639682dd94911d374 419 Gene3D G3DSA:3.20.20.150 1 419 1.3E-111 T 28-03-2018 AM348_RS04445 0b0d530cbcd690e639682dd94911d374 419 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 9 418 0.0 T 28-03-2018 AM348_RS04445 0b0d530cbcd690e639682dd94911d374 419 Pfam PF06134 L-rhamnose isomerase (RhaA) 3 418 1.3E-235 T 28-03-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 AM348_RS04445 0b0d530cbcd690e639682dd94911d374 419 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 419 278.62 T 28-03-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 AM348_RS04445 0b0d530cbcd690e639682dd94911d374 419 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 5 418 1.6E-244 T 28-03-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 AM348_RS04445 0b0d530cbcd690e639682dd94911d374 419 SUPERFAMILY SSF51658 4 418 1.07E-85 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 Pfam PF01381 Helix-turn-helix 45 88 3.0E-8 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 Gene3D G3DSA:1.10.260.40 16 96 2.1E-13 T 28-03-2018 AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 Pfam PF00717 Peptidase S24-like 160 228 1.0E-11 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 SMART SM00530 29 88 1.8E-6 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 Gene3D G3DSA:2.10.109.10 105 243 6.9E-21 T 28-03-2018 AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 SUPERFAMILY SSF47413 26 95 1.15E-7 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 SUPERFAMILY SSF51306 109 239 1.57E-19 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS14640 9f2935a93d3ddbad4f841eea7614b4b9 250 ProSitePatterns PS00501 Signal peptidases I serine active site. 163 170 - T 28-03-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 AM348_RS07625 f6bac59990ff3beac09d6a6e6404fad8 386 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 374 9.6E-86 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS07625 f6bac59990ff3beac09d6a6e6404fad8 386 Gene3D G3DSA:1.20.1600.10 4 340 7.2E-32 T 28-03-2018 AM348_RS07625 f6bac59990ff3beac09d6a6e6404fad8 386 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 292 6.9E-15 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS07625 f6bac59990ff3beac09d6a6e6404fad8 386 SUPERFAMILY SSF111369 51 299 1.44E-88 T 28-03-2018 AM348_RS07625 f6bac59990ff3beac09d6a6e6404fad8 386 Pfam PF00529 HlyD membrane-fusion protein of T1SS 162 359 1.3E-12 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS16690 ba9d89d5516bbb1a6e63021370f61a21 127 Gene3D G3DSA:3.10.180.10 1 127 1.6E-21 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS16690 ba9d89d5516bbb1a6e63021370f61a21 127 SUPERFAMILY SSF54593 1 126 1.29E-21 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS16690 ba9d89d5516bbb1a6e63021370f61a21 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 125 1.4E-7 T 28-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM348_RS07180 731767400fdc9a8dd861f973e098ed98 695 Pfam PF12805 FUSC-like inner membrane protein yccS 63 330 1.6E-71 T 28-03-2018 IPR032692 Integral membrane protein YccS, N-terminal AM348_RS07180 731767400fdc9a8dd861f973e098ed98 695 Pfam PF13515 Fusaric acid resistance protein-like 377 498 2.1E-20 T 28-03-2018 AM348_RS07180 731767400fdc9a8dd861f973e098ed98 695 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 673 2.9E-243 T 28-03-2018 IPR010020 Integral membrane protein, YccS/YhfK AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 Gene3D G3DSA:3.65.10.10 228 425 2.2E-68 T 28-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 28-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 Gene3D G3DSA:3.65.10.10 21 227 1.6E-64 T 28-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 420 3.7E-155 T 28-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 424 7.0E-143 T 28-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 ProSitePatterns PS00885 EPSP synthase signature 2. 338 356 - T 28-03-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 SUPERFAMILY SSF55205 1 423 2.52E-146 T 28-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 PIRSF PIRSF000505 1 427 1.6E-156 T 28-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM348_RS20760 76381d9d270803d413063e6dfb046b56 427 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 35.872 T 28-03-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 Gene3D G3DSA:1.10.10.10 97 171 6.3E-34 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 Pfam PF04337 Protein of unknown function, DUF480 5 158 1.9E-63 T 28-03-2018 IPR007432 Protein of unknown function DUF480 AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 Gene3D G3DSA:1.20.5.10 186 215 0.0018 T 28-03-2018 AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 SUPERFAMILY SSF46785 2 84 1.84E-32 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 Gene3D G3DSA:1.10.10.10 2 87 9.6E-38 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 211 35.023 T 28-03-2018 IPR007432 Protein of unknown function DUF480 AM348_RS19960 89b9083ad8ffbe92298f2e45d9ae863d 215 SUPERFAMILY SSF46785 90 172 8.72E-30 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 6 547 4.5E-260 T 28-03-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 SUPERFAMILY SSF51445 4 471 2.79E-155 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Gene3D G3DSA:3.20.20.80 341 467 3.4E-22 T 28-03-2018 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 SMART SM00642 14 413 6.2E-154 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Gene3D G3DSA:3.20.20.80 1 120 2.6E-48 T 28-03-2018 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Pfam PF11941 Domain of unknown function (DUF3459) 458 547 2.2E-9 T 28-03-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Pfam PF00128 Alpha amylase, catalytic domain 29 371 2.4E-127 T 28-03-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Gene3D G3DSA:3.20.20.470 170 340 9.0E-38 T 28-03-2018 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Gene3D G3DSA:2.60.40.1180 474 550 1.6E-19 T 28-03-2018 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 SUPERFAMILY SSF51011 474 548 3.81E-19 T 28-03-2018 AM348_RS02500 4a87c781b15f5f1289ade1a41851a980 550 Gene3D G3DSA:3.90.400.10 121 169 4.4E-26 T 28-03-2018 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 SUPERFAMILY SSF54919 1 141 1.57E-57 T 28-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 7.7E-39 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 7.7E-39 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 7.7E-39 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 7.7E-39 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 7.7E-39 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 Gene3D G3DSA:3.30.70.141 2 142 1.5E-51 T 28-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 Pfam PF00334 Nucleoside diphosphate kinase 4 137 3.7E-53 T 28-03-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.078 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 SMART SM00562 3 140 6.3E-84 T 28-03-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 AM348_RS11570 821ce4570f7c9e22745484d65b0fc9a4 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 28-03-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.9E-49 T 28-03-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 SUPERFAMILY SSF53271 69 306 7.85E-67 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 SMART SM01400 4 121 5.7E-76 T 28-03-2018 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 1.8E-127 T 28-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 1.5E-30 T 28-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 Gene3D G3DSA:3.40.50.2020 153 307 1.0E-42 T 28-03-2018 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 Gene3D G3DSA:3.40.50.2020 1 152 8.5E-66 T 28-03-2018 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 28-03-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 AM348_RS15735 9345abfa17bfed25372c2eef21741fe4 315 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 4 314 49.752 T 28-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM348_RS05745 31f693206d73d322708cdc9a0f19b1a2 106 Gene3D G3DSA:3.40.50.2300 2 101 7.8E-36 T 28-03-2018 AM348_RS05745 31f693206d73d322708cdc9a0f19b1a2 106 SUPERFAMILY SSF52794 2 99 2.96E-32 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS05745 31f693206d73d322708cdc9a0f19b1a2 106 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 88 7.8E-30 T 28-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 AM348_RS05745 31f693206d73d322708cdc9a0f19b1a2 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 87 1.7E-16 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS20080 cb606bbb8b683e4a1ea6518bdc879d29 149 Pfam PF07012 Curlin associated repeat 84 117 3.4E-7 T 28-03-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AM348_RS20080 cb606bbb8b683e4a1ea6518bdc879d29 149 Pfam PF07012 Curlin associated repeat 64 94 2.1E-7 T 28-03-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AM348_RS20080 cb606bbb8b683e4a1ea6518bdc879d29 149 Pfam PF07012 Curlin associated repeat 38 72 3.3E-5 T 28-03-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AM348_RS08335 7a59a265d8e3096499c8c60a05a03fec 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 6.3E-96 T 28-03-2018 IPR005130 Serine dehydratase-like, alpha subunit AM348_RS08335 7a59a265d8e3096499c8c60a05a03fec 454 SUPERFAMILY SSF143548 16 158 1.02E-43 T 28-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM348_RS08335 7a59a265d8e3096499c8c60a05a03fec 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.4E-216 T 28-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM348_RS08335 7a59a265d8e3096499c8c60a05a03fec 454 Gene3D G3DSA:3.30.1330.90 10 158 2.2E-51 T 28-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM348_RS08335 7a59a265d8e3096499c8c60a05a03fec 454 Pfam PF03315 Serine dehydratase beta chain 3 155 9.8E-55 T 28-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM348_RS08335 7a59a265d8e3096499c8c60a05a03fec 454 Gene3D G3DSA:1.10.4100.10 266 442 2.8E-33 T 28-03-2018 AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 28-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 30.045 T 28-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 SUPERFAMILY SSF57716 111 149 4.56E-10 T 28-03-2018 AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 1.5E-51 T 28-03-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 SUPERFAMILY SSF109635 9 109 3.01E-37 T 28-03-2018 AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 110 143 2.4E-10 T 28-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 28-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM348_RS00910 58eca3e6eb1f7d413173c829f86adbf7 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 28-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 SUPERFAMILY SSF53383 19 400 1.13E-125 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 8 404 7.0E-204 T 28-03-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 Gene3D G3DSA:3.90.1150.10 290 405 3.7E-31 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 Gene3D G3DSA:3.40.640.10 60 289 4.5E-76 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 400 1.1E-149 T 28-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 PIRSF PIRSF000521 29 157 5.0E-7 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 PIRSF PIRSF000521 174 403 2.8E-37 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 401 45.454 T 28-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 Pfam PF00202 Aminotransferase class-III 26 400 5.1E-139 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS07175 cc684abb936aaf25df49a5d74a49dfc1 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 SUPERFAMILY SSF47729 1 90 1.35E-32 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.3E-33 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 SMART SM00411 1 90 2.3E-43 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.0E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.0E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.0E-19 T 28-03-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 28-03-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 AM348_RS03895 1bb50092fec0dda32954ed0fac5a61aa 90 Gene3D G3DSA:4.10.520.10 1 90 1.2E-33 T 28-03-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 AM348_RS22915 842bcafd7351506bbca2c93246a77b3c 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 1.7E-57 T 28-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AM348_RS22915 842bcafd7351506bbca2c93246a77b3c 159 Gene3D G3DSA:3.90.960.10 1 159 1.6E-43 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS22915 842bcafd7351506bbca2c93246a77b3c 159 PIRSF PIRSF006181 1 159 3.4E-59 T 28-03-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC AM348_RS22915 842bcafd7351506bbca2c93246a77b3c 159 SUPERFAMILY SSF55826 2 155 3.01E-45 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS22915 842bcafd7351506bbca2c93246a77b3c 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 9.1E-23 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 Gene3D G3DSA:3.90.180.10 259 337 0.03 T 28-03-2018 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 SMART SM00829 13 335 4.9E-7 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 137 8.8E-26 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 SUPERFAMILY SSF51735 142 305 3.4E-38 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 Pfam PF00107 Zinc-binding dehydrogenase 179 299 1.3E-21 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 Gene3D G3DSA:3.90.180.10 2 184 7.0E-48 T 28-03-2018 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 Gene3D G3DSA:3.40.50.20 185 255 3.6E-17 T 28-03-2018 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 172 199 - T 28-03-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 28-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM348_RS02355 7a9533726faf52d53886fbdeb8d195cf 339 SUPERFAMILY SSF50129 9 162 2.28E-43 T 28-03-2018 IPR011032 GroES-like AM348_RS04170 624893f98abc5acba602b7621621e148 106 Gene3D G3DSA:3.40.50.2300 3 102 1.4E-40 T 28-03-2018 AM348_RS04170 624893f98abc5acba602b7621621e148 106 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 89 2.1E-40 T 28-03-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202|KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 AM348_RS04170 624893f98abc5acba602b7621621e148 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 96 3.0E-21 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS04170 624893f98abc5acba602b7621621e148 106 SUPERFAMILY SSF52794 3 100 4.88E-35 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 Gene3D G3DSA:2.40.240.50 58 259 6.3E-63 T 28-03-2018 AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 Pfam PF03562 MltA specific insert domain 98 257 1.9E-40 T 28-03-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 SMART SM00925 125 257 9.6E-70 T 28-03-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 SUPERFAMILY SSF50685 25 353 2.86E-115 T 28-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 Pfam PF06725 3D domain 277 354 6.5E-25 T 28-03-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 PIRSF PIRSF019422 145 365 7.2E-74 T 28-03-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AM348_RS09830 f2f5a2047cb08ef902d58563f514490e 365 PIRSF PIRSF019422 1 147 7.3E-21 T 28-03-2018 IPR026044 Membrane-bound lytic murein transglycosylase A AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 Gene3D G3DSA:1.10.10.10 1 79 7.2E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.8E-20 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 SUPERFAMILY SSF46785 11 88 2.66E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 SMART SM00345 12 71 5.9E-23 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 161.302 T 28-03-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 SUPERFAMILY SSF48008 79 230 4.19E-64 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 Pfam PF07840 FadR C-terminal domain 72 234 7.8E-73 T 28-03-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 235 3.3E-123 T 28-03-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 AM348_RS15525 ce1ac5f64da3e093ae0ce073c735a083 239 Gene3D G3DSA:1.20.120.530 80 239 1.5E-23 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS12775 77ee4729f44d06852f825d3cb51ed825 355 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 33 347 4.5E-76 T 28-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AM348_RS12775 77ee4729f44d06852f825d3cb51ed825 355 SUPERFAMILY SSF51695 29 353 7.33E-95 T 28-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM348_RS12775 77ee4729f44d06852f825d3cb51ed825 355 Gene3D G3DSA:3.20.20.190 27 353 3.2E-65 T 28-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 1.4E-25 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 1.4E-25 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 1.4E-25 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.4E-25 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 1.1E-17 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 SMART SM00418 8 86 1.2E-29 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 SUPERFAMILY SSF46785 6 104 1.3E-25 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 32 50 - T 28-03-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 AM348_RS14235 73b33cdcd8f6ee410e0ef4b03e446d20 117 Gene3D G3DSA:1.10.10.10 2 107 4.1E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14335 992969828aa0f7a17f445116a9d95251 230 SUPERFAMILY SSF109604 1 215 1.19E-58 T 28-03-2018 AM348_RS14335 992969828aa0f7a17f445116a9d95251 230 Pfam PF01966 HD domain 29 131 1.1E-10 T 28-03-2018 IPR006674 HD domain AM348_RS14335 992969828aa0f7a17f445116a9d95251 230 SMART SM00471 22 141 2.1E-7 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS14335 992969828aa0f7a17f445116a9d95251 230 Gene3D G3DSA:1.10.3210.10 7 215 7.1E-15 T 28-03-2018 AM348_RS13005 181351b86710d7aa00f9f3a9f4ef4f47 396 TIGRFAM TIGR00880 2_A_01_02: multidrug resistance protein 52 188 5.0E-41 T 28-03-2018 IPR004734 Multidrug resistance protein GO:0015238|GO:0015893|GO:0016021 Reactome: R-HSA-442660 AM348_RS13005 181351b86710d7aa00f9f3a9f4ef4f47 396 Gene3D G3DSA:1.20.1250.20 3 196 1.7E-36 T 28-03-2018 AM348_RS13005 181351b86710d7aa00f9f3a9f4ef4f47 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 7 390 9.6E-157 T 28-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM348_RS13005 181351b86710d7aa00f9f3a9f4ef4f47 396 SUPERFAMILY SSF103473 9 392 7.59E-71 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS13005 181351b86710d7aa00f9f3a9f4ef4f47 396 Pfam PF07690 Major Facilitator Superfamily 16 358 8.8E-46 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS13005 181351b86710d7aa00f9f3a9f4ef4f47 396 Gene3D G3DSA:1.20.1250.20 199 396 3.6E-17 T 28-03-2018 AM348_RS05930 f1f1f45d19537ee427d86ee51550cb9c 310 Gene3D G3DSA:3.40.50.720 1 182 9.8E-22 T 28-03-2018 AM348_RS05930 f1f1f45d19537ee427d86ee51550cb9c 310 Gene3D G3DSA:3.90.25.10 183 310 1.1E-19 T 28-03-2018 AM348_RS05930 f1f1f45d19537ee427d86ee51550cb9c 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 3.5E-46 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS05930 f1f1f45d19537ee427d86ee51550cb9c 310 SUPERFAMILY SSF51735 1 306 1.49E-62 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05930 f1f1f45d19537ee427d86ee51550cb9c 310 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 309 49.873 T 28-03-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 AM348_RS05930 f1f1f45d19537ee427d86ee51550cb9c 310 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 308 1.5E-137 T 28-03-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 AM348_RS02570 1595ed7da7151cf74730ad91c2a73812 183 SUPERFAMILY SSF158710 37 179 1.23E-50 T 28-03-2018 IPR023153 PSPTO4464-like domain AM348_RS02570 1595ed7da7151cf74730ad91c2a73812 183 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 16 180 23.423 T 28-03-2018 IPR006839 Ribosome-associated, YjgA AM348_RS02570 1595ed7da7151cf74730ad91c2a73812 183 Gene3D G3DSA:1.10.60.30 38 106 5.1E-23 T 28-03-2018 AM348_RS02570 1595ed7da7151cf74730ad91c2a73812 183 PIRSF PIRSF016183 10 183 2.0E-70 T 28-03-2018 IPR006839 Ribosome-associated, YjgA AM348_RS02570 1595ed7da7151cf74730ad91c2a73812 183 Pfam PF04751 Protein of unknown function (DUF615) 26 176 3.4E-54 T 28-03-2018 IPR006839 Ribosome-associated, YjgA AM348_RS02570 1595ed7da7151cf74730ad91c2a73812 183 Gene3D G3DSA:1.10.60.30 111 183 1.3E-28 T 28-03-2018 AM348_RS08230 0db64098914f503f05cc599b00d8f4d4 349 Pfam PF13412 Winged helix-turn-helix DNA-binding 290 334 6.4E-7 T 28-03-2018 AM348_RS08230 0db64098914f503f05cc599b00d8f4d4 349 Pfam PF02661 Fic/DOC family 101 196 9.2E-22 T 28-03-2018 IPR003812 Fido domain AM348_RS08230 0db64098914f503f05cc599b00d8f4d4 349 SUPERFAMILY SSF140931 79 252 1.57E-40 T 28-03-2018 IPR003812 Fido domain AM348_RS08230 0db64098914f503f05cc599b00d8f4d4 349 Gene3D G3DSA:1.10.10.10 277 349 3.8E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08230 0db64098914f503f05cc599b00d8f4d4 349 SUPERFAMILY SSF46785 290 347 3.24E-7 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08230 0db64098914f503f05cc599b00d8f4d4 349 Gene3D G3DSA:1.10.3290.10 13 271 1.2E-49 T 28-03-2018 IPR003812 Fido domain AM348_RS06695 258710b4031aea24ff55f6000cb2c5c6 81 SUPERFAMILY SSF64307 4 80 2.88E-26 T 28-03-2018 IPR001455 TusA-like domain AM348_RS06695 258710b4031aea24ff55f6000cb2c5c6 81 Pfam PF01206 Sulfurtransferase TusA 10 79 1.8E-24 T 28-03-2018 IPR001455 TusA-like domain AM348_RS06695 258710b4031aea24ff55f6000cb2c5c6 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 28-03-2018 IPR001455 TusA-like domain AM348_RS06695 258710b4031aea24ff55f6000cb2c5c6 81 Gene3D G3DSA:3.30.110.40 4 81 8.4E-29 T 28-03-2018 IPR001455 TusA-like domain AM348_RS06695 258710b4031aea24ff55f6000cb2c5c6 81 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 3 81 29.24 T 28-03-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 AM348_RS08850 18553b07ee8e00efba69d5ba82108f7c 132 Pfam PF04076 Bacterial OB fold (BOF) protein 25 129 1.5E-42 T 28-03-2018 IPR005220 Bacterial OB-fold AM348_RS08850 18553b07ee8e00efba69d5ba82108f7c 132 SUPERFAMILY SSF101756 32 129 4.84E-36 T 28-03-2018 IPR005220 Bacterial OB-fold AM348_RS08850 18553b07ee8e00efba69d5ba82108f7c 132 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 2 130 6.3E-59 T 28-03-2018 IPR016052 Bacteriophage 933W, L0136 AM348_RS08850 18553b07ee8e00efba69d5ba82108f7c 132 Gene3D G3DSA:2.40.50.200 22 132 1.5E-38 T 28-03-2018 AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 Pfam PF00005 ABC transporter 22 191 1.1E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 Pfam PF00005 ABC transporter 340 473 1.1E-23 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 SUPERFAMILY SSF52540 301 526 1.33E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 Gene3D G3DSA:3.40.50.300 290 551 1.8E-56 T 28-03-2018 AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 SMART SM00382 348 522 3.0E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 SMART SM00382 31 236 6.6E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 Gene3D G3DSA:3.40.50.300 12 289 2.1E-56 T 28-03-2018 AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 3.7E-294 T 28-03-2018 IPR022374 ABC transporter, ATP-binding protein, ChvD AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 Pfam PF12848 ABC transporter 230 306 1.5E-11 T 28-03-2018 IPR032781 ABC-transporter extension domain AM348_RS01745 d2e73a52a0fd3dbd3b9ed677df59f03e 555 SUPERFAMILY SSF52540 11 243 3.23E-48 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 PIRSF PIRSF004776 1 409 4.8E-216 T 28-03-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 SMART SM00530 5 61 4.8E-8 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 Gene3D G3DSA:3.40.50.620 62 229 1.4E-18 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 SUPERFAMILY SSF52540 231 385 3.15E-27 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 Pfam PF01381 Helix-turn-helix 6 58 7.0E-9 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 63 394 6.8E-161 T 28-03-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0003677|GO:0006355|GO:0006810|GO:0019363 KEGG: 00760+2.7.7.1+2.7.1.22 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 65 135 3.9E-19 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 Pfam PF13521 AAA domain 233 393 2.6E-31 T 28-03-2018 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 Gene3D G3DSA:1.10.260.40 3 60 1.4E-10 T 28-03-2018 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 SUPERFAMILY SSF47413 5 58 3.56E-9 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 Gene3D G3DSA:3.40.50.300 230 397 1.7E-14 T 28-03-2018 AM348_RS01750 72101ef65ff77f73d33bb5e8f89bf243 409 SUPERFAMILY SSF52374 65 228 6.7E-18 T 28-03-2018 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 SUPERFAMILY SSF54001 2 270 2.94E-87 T 28-03-2018 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 Pfam PF00797 N-acetyltransferase 22 255 1.6E-83 T 28-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 Gene3D G3DSA:3.30.2140.10 2 149 1.9E-40 T 28-03-2018 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 Gene3D G3DSA:3.30.2140.10 150 269 8.5E-15 T 28-03-2018 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 21 44 1.8E-10 T 28-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 151 170 1.8E-10 T 28-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 69 91 1.8E-10 T 28-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 45 68 1.8E-10 T 28-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM348_RS17310 880e189b23b4c71e1ba9789e5cec6e4b 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 101 126 1.8E-10 T 28-03-2018 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 AM348_RS01460 f966a6bc1e1ed9e8decc534b194b1d16 77 Gene3D G3DSA:2.30.30.100 23 75 2.8E-25 T 28-03-2018 AM348_RS01460 f966a6bc1e1ed9e8decc534b194b1d16 77 Pfam PF06004 Bacterial protein of unknown function (DUF903) 26 74 1.0E-18 T 28-03-2018 IPR010305 Protein of unknown function DUF903 AM348_RS01460 f966a6bc1e1ed9e8decc534b194b1d16 77 SUPERFAMILY SSF50182 23 75 3.05E-15 T 28-03-2018 IPR010920 LSM domain AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 SMART SM00829 12 338 5.8E-6 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 SUPERFAMILY SSF50129 1 173 7.91E-54 T 28-03-2018 IPR011032 GroES-like AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.99 T 28-03-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 Gene3D G3DSA:3.90.180.10 1 152 2.2E-46 T 28-03-2018 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 3.7E-32 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 1.5E-27 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 5.5E-189 T 28-03-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 SUPERFAMILY SSF51735 141 305 8.7E-38 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 28-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM348_RS05940 d4b5b06db752ce8afa8ffbd9c4a0a26a 341 Gene3D G3DSA:3.40.50.10730 153 304 3.6E-27 T 28-03-2018 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 SUPERFAMILY SSF53067 159 392 1.19E-85 T 28-03-2018 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 Pfam PF00871 Acetokinase family 4 387 4.1E-147 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 Hamap MF_01882 Probable propionate kinase [pduW]. 1 392 73.216 T 28-03-2018 IPR024896 Propionate kinase PduW GO:0008980|GO:0019543|GO:0051144 KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 SUPERFAMILY SSF53067 4 195 4.27E-65 T 28-03-2018 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 28-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PIRSF PIRSF000722 1 397 3.8E-147 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 28-03-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 TIGRFAM TIGR00016 ackA: acetate kinase 2 393 2.2E-155 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 Gene3D G3DSA:3.30.420.40 4 195 2.0E-72 T 28-03-2018 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PRINTS PR00471 Acetate kinase family signature 300 313 6.0E-42 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PRINTS PR00471 Acetate kinase family signature 203 224 6.0E-42 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PRINTS PR00471 Acetate kinase family signature 173 186 6.0E-42 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PRINTS PR00471 Acetate kinase family signature 5 16 6.0E-42 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PRINTS PR00471 Acetate kinase family signature 374 386 6.0E-42 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 PRINTS PR00471 Acetate kinase family signature 322 338 6.0E-42 T 28-03-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 Hamap MF_00020 Acetate kinase [ackA]. 1 397 178.753 T 28-03-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 AM348_RS13970 d9045493a0c19da8ca11a61c9f6c20fb 404 Gene3D G3DSA:3.30.420.40 197 400 2.2E-77 T 28-03-2018 AM348_RS07245 9a4882c04fd214b015cd4e2dbb375b41 184 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 2 183 48.201 T 28-03-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM348_RS07245 9a4882c04fd214b015cd4e2dbb375b41 184 Gene3D G3DSA:3.40.50.360 1 179 8.9E-32 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS07245 9a4882c04fd214b015cd4e2dbb375b41 184 SUPERFAMILY SSF52218 6 177 1.61E-46 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS07245 9a4882c04fd214b015cd4e2dbb375b41 184 Pfam PF02525 Flavodoxin-like fold 7 172 1.7E-39 T 28-03-2018 IPR003680 Flavodoxin-like fold AM348_RS19570 3eea7468667dfb349c2bdd1b243876a2 140 Pfam PF03061 Thioesterase superfamily 49 122 5.9E-20 T 28-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM348_RS19570 3eea7468667dfb349c2bdd1b243876a2 140 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 17 130 4.9E-37 T 28-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM348_RS19570 3eea7468667dfb349c2bdd1b243876a2 140 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 20 132 2.7E-48 T 28-03-2018 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 AM348_RS19570 3eea7468667dfb349c2bdd1b243876a2 140 SUPERFAMILY SSF54637 6 127 2.35E-31 T 28-03-2018 IPR029069 HotDog domain AM348_RS19570 3eea7468667dfb349c2bdd1b243876a2 140 Gene3D G3DSA:3.10.129.10 1 129 6.7E-31 T 28-03-2018 AM348_RS18845 31a493595d77e356e2d491d2d7c6ecd7 326 Pfam PF01032 FecCD transport family 22 323 2.0E-87 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS18845 31a493595d77e356e2d491d2d7c6ecd7 326 Gene3D G3DSA:1.10.3470.10 1 326 4.5E-66 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS18845 31a493595d77e356e2d491d2d7c6ecd7 326 SUPERFAMILY SSF81345 6 323 2.48E-84 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS18845 31a493595d77e356e2d491d2d7c6ecd7 326 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 1 326 32.366 T 28-03-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 AM348_RS14885 566d18f8941b59bee2b9f2f4df75fafe 118 Pfam PF02411 MerT mercuric transport protein 11 114 1.2E-7 T 28-03-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 AM348_RS14885 566d18f8941b59bee2b9f2f4df75fafe 118 Gene3D G3DSA:1.10.287.910 19 72 5.6E-11 T 28-03-2018 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 270 33.045 T 28-03-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 SUPERFAMILY SSF53223 4 102 1.96E-32 T 28-03-2018 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 271 2.3E-105 T 28-03-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 SUPERFAMILY SSF51735 103 270 6.44E-45 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 Gene3D G3DSA:3.40.50.720 112 273 9.8E-30 T 28-03-2018 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 1.4E-24 T 28-03-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 Gene3D G3DSA:3.40.50.10860 1 111 8.0E-39 T 28-03-2018 AM348_RS07535 66652a1ee9e9422e9db808db0587cd1c 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 121 191 7.5E-10 T 28-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 Gene3D G3DSA:3.90.380.10 151 369 2.6E-41 T 28-03-2018 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 SUPERFAMILY SSF50022 17 159 2.62E-48 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 184 372 2.8E-21 T 28-03-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 Gene3D G3DSA:2.102.10.10 44 150 3.1E-27 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 Pfam PF00355 Rieske [2Fe-2S] domain 46 134 6.0E-21 T 28-03-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 31 56 7.3E-25 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 103 123 7.3E-25 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 144 170 7.3E-25 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 61 76 7.3E-25 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 82 102 7.3E-25 T 28-03-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 SUPERFAMILY SSF55961 160 371 2.35E-35 T 28-03-2018 AM348_RS15460 d60de6b7c307cb1a9e66838611759cf7 374 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 89 112 - T 28-03-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 Gene3D G3DSA:1.10.8.50 131 269 1.7E-51 T 28-03-2018 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 SUPERFAMILY SSF81624 2 138 9.29E-45 T 28-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 8.7E-9 T 28-03-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 SUPERFAMILY SSF46946 130 222 1.7E-31 T 28-03-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 Gene3D G3DSA:3.20.190.10 1 130 2.2E-38 T 28-03-2018 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 4.2E-108 T 28-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 3.8E-32 T 28-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 SMART SM01232 129 221 2.5E-49 T 28-03-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 28-03-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 44.566 T 28-03-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 SUPERFAMILY SSF57716 217 269 7.7E-17 T 28-03-2018 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 8.9E-33 T 28-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM348_RS05875 2d2b2b45f62e9e7d573ed7393dac127d 269 SMART SM00898 2 115 2.5E-53 T 28-03-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 AM348_RS20985 b3c4a92d0b42b52de53c9c0b17497a37 402 Gene3D G3DSA:1.20.1250.20 209 401 1.8E-24 T 28-03-2018 AM348_RS20985 b3c4a92d0b42b52de53c9c0b17497a37 402 Gene3D G3DSA:1.20.1250.20 9 200 3.2E-13 T 28-03-2018 AM348_RS20985 b3c4a92d0b42b52de53c9c0b17497a37 402 SUPERFAMILY SSF103473 6 390 1.57E-44 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS20985 b3c4a92d0b42b52de53c9c0b17497a37 402 Pfam PF07690 Major Facilitator Superfamily 223 386 1.6E-17 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 28-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 Gene3D G3DSA:3.40.47.10 240 389 3.1E-39 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 236 336 2.7E-27 T 28-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 SUPERFAMILY SSF53901 2 230 1.32E-38 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 Gene3D G3DSA:3.40.47.10 1 234 1.1E-36 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 SUPERFAMILY SSF53901 203 387 1.76E-46 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 91 229 1.3E-20 T 28-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM348_RS06600 1cc5272e09f8d1ccf2deca71a2c0b768 389 SMART SM00825 Beta-ketoacyl synthase 2 388 1.4E-9 T 28-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM348_RS13330 df6d43b2ea9da61f341e93662d8e7ae2 388 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 198 378 4.1E-22 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13330 df6d43b2ea9da61f341e93662d8e7ae2 388 SUPERFAMILY SSF161098 175 375 2.35E-31 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13330 df6d43b2ea9da61f341e93662d8e7ae2 388 Gene3D G3DSA:1.10.3720.10 9 383 1.8E-22 T 28-03-2018 AM348_RS13950 469da3df2f11f189eece507c96be85a1 155 Hamap MF_01896 DNA gyrase inhibitor [sbmC]. 1 155 39.214 T 28-03-2018 IPR024911 DNA gyrase inhibitor GyrI GO:0008657 AM348_RS13950 469da3df2f11f189eece507c96be85a1 155 Gene3D G3DSA:3.20.80.10 1 155 4.1E-24 T 28-03-2018 IPR011256 Regulatory factor, effector binding domain AM348_RS13950 469da3df2f11f189eece507c96be85a1 155 Pfam PF06445 GyrI-like small molecule binding domain 1 152 3.4E-27 T 28-03-2018 IPR029442 GyrI-like small molecule binding domain AM348_RS13950 469da3df2f11f189eece507c96be85a1 155 SUPERFAMILY SSF55136 1 153 1.15E-41 T 28-03-2018 AM348_RS13950 469da3df2f11f189eece507c96be85a1 155 SMART SM00871 1 153 5.5E-30 T 28-03-2018 IPR010499 Bacterial transcription activator, effector binding AM348_RS17045 70be1f535068490d599267aefe889153 333 Pfam PF03595 Voltage-dependent anion channel 12 309 1.5E-40 T 28-03-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 AM348_RS17045 70be1f535068490d599267aefe889153 333 TIGRFAM TIGR00816 tdt: C4-dicarboxylate transporter/malic acid transport protein 13 316 2.9E-107 T 28-03-2018 IPR011552 Tellurite resistance protein TehA/malic acid transport protein GO:0016021 AM348_RS04650 d761e827cf302d669bc863fcab66aff3 170 Pfam PF04220 Der GTPase activator (YihI) 14 166 1.6E-54 T 28-03-2018 IPR007336 Der GTPase activator GO:0005096 AM348_RS04650 d761e827cf302d669bc863fcab66aff3 170 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 169 16.716 T 28-03-2018 IPR007336 Der GTPase activator GO:0005096 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 32 660 1.3E-133 T 28-03-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 148 2.7E-25 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 31 660 3.0E-175 T 28-03-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 Gene3D G3DSA:2.170.130.10 25 156 7.3E-30 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 Pfam PF00593 TonB dependent receptor 234 658 5.7E-43 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 Gene3D G3DSA:2.40.170.20 157 660 1.6E-64 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS18795 3a66c096a7d449ca0e83686a4ad24a6f 660 SUPERFAMILY SSF56935 31 660 1.69E-104 T 28-03-2018 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 Gene3D G3DSA:3.40.47.10 261 413 6.9E-53 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 PIRSF PIRSF000447 1 413 7.4E-203 T 28-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 3.9E-196 T 28-03-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 SUPERFAMILY SSF53901 3 252 3.67E-77 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 1.7E-39 T 28-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 8.6E-63 T 28-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 Gene3D G3DSA:3.40.47.10 6 260 1.8E-80 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 28-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 SUPERFAMILY SSF53901 215 412 7.69E-74 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS19810 01b1e17b46641f9a339f4d303d51f103 413 SMART SM00825 Beta-ketoacyl synthase 6 413 2.1E-14 T 28-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM348_RS23105 f7c149593094559f8849d50d9a96f259 103 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 6 76 1.3E-14 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS23105 f7c149593094559f8849d50d9a96f259 103 Gene3D G3DSA:1.10.10.10 3 103 3.7E-31 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23105 f7c149593094559f8849d50d9a96f259 103 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 7 86 9.1E-26 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS23105 f7c149593094559f8849d50d9a96f259 103 SUPERFAMILY SSF46767 5 87 4.32E-26 T 28-03-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 AM348_RS15595 372ae478a366c08c406193017d2736d3 328 SUPERFAMILY SSF81345 6 324 9.29E-79 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS15595 372ae478a366c08c406193017d2736d3 328 Gene3D G3DSA:1.10.3470.10 1 328 7.5E-76 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS15595 372ae478a366c08c406193017d2736d3 328 Pfam PF01032 FecCD transport family 14 324 2.6E-88 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS15640 8ebbedc2cab4ad4d20bcc2a68fcd6e99 240 SUPERFAMILY SSF49354 25 148 2.38E-23 T 28-03-2018 IPR008962 PapD-like AM348_RS15640 8ebbedc2cab4ad4d20bcc2a68fcd6e99 240 Gene3D G3DSA:2.60.40.10 29 148 2.0E-27 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS15640 8ebbedc2cab4ad4d20bcc2a68fcd6e99 240 Gene3D G3DSA:2.60.40.10 149 232 8.1E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS15640 8ebbedc2cab4ad4d20bcc2a68fcd6e99 240 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 148 2.0E-21 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.2E-15 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.2E-15 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.2E-15 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 6.1E-6 T 28-03-2018 AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 SUPERFAMILY SSF51735 4 243 4.12E-87 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.8E-50 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.8E-50 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.8E-50 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.8E-50 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.8E-50 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.8E-50 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 9.2E-68 T 28-03-2018 AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 Gene3D G3DSA:3.40.50.720 158 242 7.9E-27 T 28-03-2018 AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 Gene3D G3DSA:3.40.50.720 2 157 1.7E-51 T 28-03-2018 AM348_RS19820 0ee7a321d45d4a5060c99ef7f58cc1cb 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 3.3E-102 T 28-03-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS18960 9a07d4b1538bfd720305c6e9a269ae85 452 Pfam PF02378 Phosphotransferase system, EIIC 30 363 1.2E-46 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS18960 9a07d4b1538bfd720305c6e9a269ae85 452 PIRSF PIRSF006351 1 448 4.8E-130 T 28-03-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS18960 9a07d4b1538bfd720305c6e9a269ae85 452 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 440 1.8E-170 T 28-03-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS18960 9a07d4b1538bfd720305c6e9a269ae85 452 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 440 1.8E-170 T 28-03-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 AM348_RS15175 72dd450240f6415cfeda3c556aac8719 289 Gene3D G3DSA:3.40.50.10490 94 288 4.4E-37 T 28-03-2018 AM348_RS15175 72dd450240f6415cfeda3c556aac8719 289 Gene3D G3DSA:1.10.10.10 1 93 2.9E-27 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15175 72dd450240f6415cfeda3c556aac8719 289 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 8.1E-31 T 28-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM348_RS15175 72dd450240f6415cfeda3c556aac8719 289 SUPERFAMILY SSF53697 94 279 1.42E-42 T 28-03-2018 AM348_RS15175 72dd450240f6415cfeda3c556aac8719 289 SUPERFAMILY SSF46689 1 80 1.16E-20 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS15175 72dd450240f6415cfeda3c556aac8719 289 Pfam PF01380 SIS domain 124 252 1.6E-27 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS16845 dc27466012b9f9327ab71ae471f04667 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.546 T 28-03-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 AM348_RS16845 dc27466012b9f9327ab71ae471f04667 201 SUPERFAMILY SSF52218 1 199 2.18E-58 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS16845 dc27466012b9f9327ab71ae471f04667 201 Pfam PF02525 Flavodoxin-like fold 3 195 8.9E-46 T 28-03-2018 IPR003680 Flavodoxin-like fold AM348_RS16845 dc27466012b9f9327ab71ae471f04667 201 Gene3D G3DSA:3.40.50.360 2 201 1.5E-39 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS22465 6b86a98e86c4cf3a9c2074af82b3f001 234 SUPERFAMILY SSF55729 25 198 8.07E-35 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS22465 6b86a98e86c4cf3a9c2074af82b3f001 234 Pfam PF13302 Acetyltransferase (GNAT) domain 36 173 1.4E-14 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS22465 6b86a98e86c4cf3a9c2074af82b3f001 234 Gene3D G3DSA:3.40.630.30 17 206 2.9E-29 T 28-03-2018 AM348_RS04285 055e790ef2cd4b825a2c260d176c8738 176 PIRSF PIRSF039093 1 175 7.9E-88 T 28-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AM348_RS04285 055e790ef2cd4b825a2c260d176c8738 176 SUPERFAMILY SSF56235 2 172 9.77E-59 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS04285 055e790ef2cd4b825a2c260d176c8738 176 Gene3D G3DSA:3.60.20.10 2 173 3.9E-32 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS04285 055e790ef2cd4b825a2c260d176c8738 176 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.966 T 28-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AM348_RS04285 055e790ef2cd4b825a2c260d176c8738 176 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 1.0E-86 T 28-03-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 AM348_RS04285 055e790ef2cd4b825a2c260d176c8738 176 Pfam PF00227 Proteasome subunit 2 167 3.2E-23 T 28-03-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-446652|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8941858|Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AM348_RS05695 08ef665ee3f7912922005eb655927688 86 SUPERFAMILY SSF143120 1 76 1.44E-15 T 28-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AM348_RS05695 08ef665ee3f7912922005eb655927688 86 Gene3D G3DSA:3.40.1620.10 1 48 1.4E-16 T 28-03-2018 AM348_RS05695 08ef665ee3f7912922005eb655927688 86 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 61 3.8E-16 T 28-03-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM AM348_RS05695 08ef665ee3f7912922005eb655927688 86 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 53 3.1E-14 T 28-03-2018 AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 SMART SM01034 2 94 1.4E-38 T 28-03-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 Pfam PF00563 EAL domain 168 388 9.1E-50 T 28-03-2018 IPR001633 EAL domain AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 SUPERFAMILY SSF54975 1 132 2.42E-37 T 28-03-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 SUPERFAMILY SSF141868 171 389 5.23E-49 T 28-03-2018 IPR001633 EAL domain AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 SMART SM00052 162 394 2.8E-40 T 28-03-2018 IPR001633 EAL domain AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 Pfam PF04940 Sensors of blue-light using FAD 2 92 3.4E-25 T 28-03-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 AM348_RS15655 0b87753db9841d0cd0ce6c04667839d3 409 Gene3D G3DSA:3.20.20.450 103 391 8.4E-49 T 28-03-2018 IPR001633 EAL domain AM348_RS17770 e88ffe5608e0374f49f6f39a9b6dd374 423 SUPERFAMILY SSF53822 30 409 5.42E-94 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS17770 e88ffe5608e0374f49f6f39a9b6dd374 423 Pfam PF13433 Periplasmic binding protein domain 31 407 6.4E-174 T 28-03-2018 AM348_RS17770 e88ffe5608e0374f49f6f39a9b6dd374 423 Gene3D G3DSA:3.40.50.2300 158 345 2.1E-28 T 28-03-2018 AM348_RS17770 e88ffe5608e0374f49f6f39a9b6dd374 423 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 8.8E-180 T 28-03-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like AM348_RS17770 e88ffe5608e0374f49f6f39a9b6dd374 423 Gene3D G3DSA:3.40.50.2300 26 157 4.4E-23 T 28-03-2018 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 SMART SM01274 81 261 6.2E-107 T 28-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 267 283 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 242 260 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 183 205 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 147 176 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 408 424 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 298 314 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PRINTS PR00072 Malic enzyme signature 87 111 2.7E-73 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 Gene3D G3DSA:3.40.50.10380 15 268 1.3E-112 T 28-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 SMART SM00919 271 531 3.5E-131 T 28-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 SUPERFAMILY SSF51735 271 562 8.58E-94 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 PIRSF PIRSF000106 1 563 6.3E-226 T 28-03-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 2.2E-104 T 28-03-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 28-03-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 Gene3D G3DSA:3.40.50.720 269 565 3.1E-105 T 28-03-2018 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 1.3E-79 T 28-03-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 72.353 T 28-03-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38 AM348_RS17415 5b414856a70b6ea162b70599196a0475 565 SUPERFAMILY SSF53223 9 270 1.65E-109 T 28-03-2018 AM348_RS06775 e4d1d248fdce9ad2b26832313bb6a415 255 Pfam PF00005 ABC transporter 21 181 4.9E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06775 e4d1d248fdce9ad2b26832313bb6a415 255 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06775 e4d1d248fdce9ad2b26832313bb6a415 255 SMART SM00382 30 230 2.4E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06775 e4d1d248fdce9ad2b26832313bb6a415 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 1.9E-10 T 28-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM348_RS06775 e4d1d248fdce9ad2b26832313bb6a415 255 Gene3D G3DSA:3.40.50.300 1 253 8.9E-57 T 28-03-2018 AM348_RS06775 e4d1d248fdce9ad2b26832313bb6a415 255 SUPERFAMILY SSF52540 4 253 3.24E-61 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Pfam PF04310 MukB N-terminal 2 227 2.0E-124 T 28-03-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Gene3D G3DSA:1.20.120.330 498 675 1.3E-4 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Gene3D G3DSA:3.40.50.300 1154 1436 8.8E-6 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Gene3D G3DSA:1.20.120.330 329 484 0.0093 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Gene3D G3DSA:1.20.120.330 676 969 0.02 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 1.4E-14 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Gene3D G3DSA:3.40.1140.10 1 227 2.6E-11 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 SUPERFAMILY SSF52540 1268 1433 2.54E-6 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 SUPERFAMILY SSF52540 21 55 2.54E-6 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Gene3D G3DSA:1.10.287.620 980 1120 1.5E-8 T 28-03-2018 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 SUPERFAMILY SSF52540 22 224 1.99E-23 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 PIRSF PIRSF005246 1 1486 0.0 T 28-03-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.293 T 28-03-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 AM348_RS20685 66d759583a09b5ba2e283f949981b84c 1486 Pfam PF16330 MukB hinge domain 645 810 1.8E-73 T 28-03-2018 IPR032520 MukB, hinge domain AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 Gene3D G3DSA:1.10.8.260 270 321 1.5E-14 T 28-03-2018 IPR023166 HI0933 insert-like domain AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 392 1.8E-127 T 28-03-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 Pfam PF03486 HI0933-like protein 5 392 1.7E-156 T 28-03-2018 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 Gene3D G3DSA:2.40.30.10 196 269 1.9E-22 T 28-03-2018 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 SUPERFAMILY SSF51905 337 394 1.7E-59 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 SUPERFAMILY SSF51905 3 188 1.7E-59 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 Gene3D G3DSA:3.50.50.60 2 195 1.3E-22 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 SUPERFAMILY SSF160996 190 338 2.49E-42 T 28-03-2018 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.9E-7 T 28-03-2018 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 1.9E-7 T 28-03-2018 AM348_RS06480 2a6dcba139dcc2791d27d2743233ccc8 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.9E-7 T 28-03-2018 AM348_RS09560 9269b5641c9d432deecbe8f374fb2493 444 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 30 438 8.6E-191 T 28-03-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0042710 AM348_RS09560 9269b5641c9d432deecbe8f374fb2493 444 Pfam PF13641 Glycosyltransferase like family 2 77 297 4.5E-38 T 28-03-2018 AM348_RS09560 9269b5641c9d432deecbe8f374fb2493 444 Gene3D G3DSA:3.90.550.10 51 327 4.8E-57 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS09560 9269b5641c9d432deecbe8f374fb2493 444 SUPERFAMILY SSF53448 66 342 5.63E-63 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS08395 1cfad579b05c5f812baeda44c5006002 101 Gene3D G3DSA:1.10.287.1060 3 83 3.5E-4 T 28-03-2018 AM348_RS08395 1cfad579b05c5f812baeda44c5006002 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 2.2E-32 T 28-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM348_RS04800 b38fca917cb0faa824f5d760d35381c2 546 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 446 7.6E-186 T 28-03-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AM348_RS04800 b38fca917cb0faa824f5d760d35381c2 546 Gene3D G3DSA:3.30.200.20 103 245 2.0E-18 T 28-03-2018 AM348_RS04800 b38fca917cb0faa824f5d760d35381c2 546 Pfam PF03109 ABC1 family 115 232 2.5E-34 T 28-03-2018 IPR004147 UbiB domain AM348_RS04800 b38fca917cb0faa824f5d760d35381c2 546 SUPERFAMILY SSF56112 94 159 8.66E-49 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS04800 b38fca917cb0faa824f5d760d35381c2 546 SUPERFAMILY SSF56112 194 438 8.66E-49 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS04800 b38fca917cb0faa824f5d760d35381c2 546 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 542 56.937 T 28-03-2018 IPR010232 Probable protein kinase UbiB GO:0006744 AM348_RS02445 e2ee10f774a51c651f1a57616595dc6b 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 2.3E-53 T 28-03-2018 IPR006056 RidA family AM348_RS02445 e2ee10f774a51c651f1a57616595dc6b 128 Pfam PF01042 Endoribonuclease L-PSP 7 126 1.2E-44 T 28-03-2018 IPR006175 YjgF/YER057c/UK114 family AM348_RS02445 e2ee10f774a51c651f1a57616595dc6b 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 28-03-2018 IPR019897 RidA, conserved site AM348_RS02445 e2ee10f774a51c651f1a57616595dc6b 128 Gene3D G3DSA:3.30.1330.40 1 128 2.3E-45 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS02445 e2ee10f774a51c651f1a57616595dc6b 128 SUPERFAMILY SSF55298 4 127 1.73E-43 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 8.7E-4 T 28-03-2018 AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 Gene3D G3DSA:3.40.50.720 2 253 5.4E-63 T 28-03-2018 AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 8.5E-23 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 8.5E-23 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 8.5E-23 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 8.5E-23 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 8.5E-23 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 8.5E-23 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 Pfam PF00106 short chain dehydrogenase 14 209 3.7E-54 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS16450 da5568807977a7a6d28622c32c43dc54 253 SUPERFAMILY SSF51735 10 244 6.8E-65 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18545 782eb28f60daceedbd5bbaf073d049ae 225 SUPERFAMILY SSF161098 26 219 5.23E-34 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS18545 782eb28f60daceedbd5bbaf073d049ae 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 27 115 1.4E-12 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS18545 782eb28f60daceedbd5bbaf073d049ae 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 43 214 6.1E-14 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS18545 782eb28f60daceedbd5bbaf073d049ae 225 Gene3D G3DSA:1.10.3720.10 3 222 5.3E-30 T 28-03-2018 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 Gene3D G3DSA:3.40.930.10 492 637 3.4E-36 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 539 555 - T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 379 454 1.8E-9 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 Gene3D G3DSA:3.40.50.2300 365 471 9.8E-21 T 28-03-2018 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 SUPERFAMILY SSF52794 377 466 2.77E-22 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 498 634 4.7E-33 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 Pfam PF02378 Phosphotransferase system, EIIC 17 277 3.9E-20 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 SUPERFAMILY SSF55804 496 634 8.24E-41 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS06055 b83ee3c2ac1b23db84d68b99722b0620 637 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 8 347 3.3E-189 T 28-03-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 77 1.3E-18 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 SMART SM00895 106 227 8.9E-15 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 3.3E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 3.3E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 SMART SM00345 18 77 1.4E-19 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 Gene3D G3DSA:1.20.120.530 101 227 5.1E-18 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 Pfam PF07729 FCD domain 108 225 2.8E-19 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 SUPERFAMILY SSF46785 10 81 4.64E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 Gene3D G3DSA:1.10.10.10 2 79 5.6E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05170 160cd012716f0a1e0b9f5688add12611 234 SUPERFAMILY SSF48008 106 225 2.59E-18 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS10300 51e01cf19a775f0d4078ee5e66dd9261 285 SUPERFAMILY SSF81345 3 260 1.31E-39 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS10300 51e01cf19a775f0d4078ee5e66dd9261 285 Pfam PF00950 ABC 3 transport family 10 264 3.0E-83 T 28-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM348_RS10300 51e01cf19a775f0d4078ee5e66dd9261 285 Gene3D G3DSA:1.10.3470.10 3 272 4.9E-29 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 SMART SM00448 5 118 3.2E-22 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 Pfam PF00072 Response regulator receiver domain 8 117 5.2E-20 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 SUPERFAMILY SSF52172 3 141 3.56E-30 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 PIRSF PIRSF006171 3 226 2.5E-73 T 28-03-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 Gene3D G3DSA:3.40.50.2300 1 149 1.4E-25 T 28-03-2018 AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 Gene3D G3DSA:1.10.10.10 161 224 3.6E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22180 0d0461e58488bef6eb466782872bec50 226 Pfam PF12431 Transcriptional regulator 135 162 8.4E-10 T 28-03-2018 IPR028141 Transcriptional regulator AM348_RS16610 5db9f632da166e011343eb4fddb5ca1a 74 Pfam PF06667 Phage shock protein B 3 73 2.2E-31 T 28-03-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 AM348_RS16610 5db9f632da166e011343eb4fddb5ca1a 74 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 1.8E-32 T 28-03-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 AM348_RS20710 0fb4bb82f1f7551508a0eb242a52d2cb 297 Gene3D G3DSA:3.90.1200.10 43 286 2.5E-4 T 28-03-2018 AM348_RS20710 0fb4bb82f1f7551508a0eb242a52d2cb 297 SUPERFAMILY SSF56112 4 270 2.3E-24 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS20710 0fb4bb82f1f7551508a0eb242a52d2cb 297 Pfam PF01636 Phosphotransferase enzyme family 64 250 2.7E-6 T 28-03-2018 IPR002575 Aminoglycoside phosphotransferase AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 SUPERFAMILY SSF53067 13 133 5.3E-36 T 28-03-2018 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 306 7.8E-97 T 28-03-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 Pfam PF02541 Ppx/GppA phosphatase family 26 308 4.6E-102 T 28-03-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 SUPERFAMILY SSF53067 137 310 2.36E-46 T 28-03-2018 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 PIRSF PIRSF001267 3 506 1.7E-205 T 28-03-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 SUPERFAMILY SSF109604 313 506 4.97E-58 T 28-03-2018 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 Gene3D G3DSA:3.30.420.150 125 305 2.5E-34 T 28-03-2018 AM348_RS11660 b5371c8041d1df72f28fd64346d1255b 513 Gene3D G3DSA:3.30.420.40 1 124 2.7E-37 T 28-03-2018 AM348_RS06305 180ceeac6c8fe7db40044698d386890a 300 SUPERFAMILY SSF161098 93 280 2.22E-29 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06305 180ceeac6c8fe7db40044698d386890a 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 3.3E-31 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06305 180ceeac6c8fe7db40044698d386890a 300 Gene3D G3DSA:1.10.3720.10 20 287 2.6E-48 T 28-03-2018 AM348_RS06305 180ceeac6c8fe7db40044698d386890a 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 2.8E-16 T 28-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM348_RS23475 a1e18f822e0e66fb5fc2422421f3ff57 302 SUPERFAMILY SSF53067 3 300 1.58E-61 T 28-03-2018 AM348_RS23475 a1e18f822e0e66fb5fc2422421f3ff57 302 Gene3D G3DSA:3.30.420.40 116 302 4.8E-52 T 28-03-2018 AM348_RS23475 a1e18f822e0e66fb5fc2422421f3ff57 302 Pfam PF00480 ROK family 3 301 2.4E-96 T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS23475 a1e18f822e0e66fb5fc2422421f3ff57 302 ProSitePatterns PS01125 ROK family signature. 130 157 - T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS23475 a1e18f822e0e66fb5fc2422421f3ff57 302 Gene3D G3DSA:3.30.420.40 1 115 2.4E-23 T 28-03-2018 AM348_RS09545 d45b2cfd07198aba8f5a32b1aa1460d6 178 Pfam PF13420 Acetyltransferase (GNAT) domain 6 157 4.0E-16 T 28-03-2018 AM348_RS09545 d45b2cfd07198aba8f5a32b1aa1460d6 178 Gene3D G3DSA:3.40.630.30 1 170 7.4E-34 T 28-03-2018 AM348_RS09545 d45b2cfd07198aba8f5a32b1aa1460d6 178 SUPERFAMILY SSF55729 3 165 6.25E-32 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS18715 1af76af0fe3a6090f0a99391d6c4798c 406 Gene3D G3DSA:1.20.1250.20 213 401 1.3E-16 T 28-03-2018 AM348_RS18715 1af76af0fe3a6090f0a99391d6c4798c 406 SUPERFAMILY SSF103473 7 391 1.31E-43 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18715 1af76af0fe3a6090f0a99391d6c4798c 406 Pfam PF07690 Major Facilitator Superfamily 13 355 3.8E-32 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS18715 1af76af0fe3a6090f0a99391d6c4798c 406 Gene3D G3DSA:1.20.1250.20 2 201 4.7E-25 T 28-03-2018 AM348_RS18715 1af76af0fe3a6090f0a99391d6c4798c 406 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 78 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 28-03-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 SUPERFAMILY SSF46689 222 324 4.93E-9 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 Gene3D G3DSA:1.10.8.60 180 280 7.3E-22 T 28-03-2018 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 322 2.0E-161 T 28-03-2018 IPR014317 Transcription activator PspF AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 Gene3D G3DSA:3.40.50.300 1 179 4.3E-28 T 28-03-2018 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 Pfam PF00158 Sigma-54 interaction domain 9 170 9.5E-62 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 Pfam PF02954 Bacterial regulatory protein, Fis family 284 321 5.9E-7 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 SMART SM00382 28 180 1.9E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 305 324 2.4E-7 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 288 305 2.4E-7 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 Gene3D G3DSA:1.10.10.60 281 324 1.1E-10 T 28-03-2018 AM348_RS16600 869fa12b9873d02b9b4b921647e66997 324 SUPERFAMILY SSF52540 10 243 2.1E-65 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 Hamap MF_01880 Dipeptide permease D [dtpD]. 1 493 58.843 T 28-03-2018 IPR023777 Amino acid/peptide transporter family, dipeptide permease D GO:0005887|GO:0042938 AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 Gene3D G3DSA:1.20.1250.20 2 196 3.6E-28 T 28-03-2018 AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 Pfam PF00854 POT family 77 443 2.1E-89 T 28-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 SUPERFAMILY SSF103473 256 477 2.62E-28 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 SUPERFAMILY SSF103473 7 195 2.62E-28 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 65 89 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 140 152 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 475 6.4E-81 T 28-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM348_RS21815 0f1b8c297250e592653e7338d908da81 493 Gene3D G3DSA:1.20.1250.20 268 492 1.1E-7 T 28-03-2018 AM348_RS18495 44e4dd3ecdc8e3447f6dd8f40a6f57d5 157 Pfam PF07366 SnoaL-like polyketide cyclase 28 147 3.4E-22 T 28-03-2018 IPR009959 Polyketide cyclase SnoaL-like domain AM348_RS18495 44e4dd3ecdc8e3447f6dd8f40a6f57d5 157 Gene3D G3DSA:3.10.450.50 5 154 2.6E-29 T 28-03-2018 AM348_RS18495 44e4dd3ecdc8e3447f6dd8f40a6f57d5 157 SUPERFAMILY SSF54427 24 149 2.7E-28 T 28-03-2018 IPR032710 NTF2-like domain AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 Pfam PF07690 Major Facilitator Superfamily 26 287 1.7E-26 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 Hamap MF_01238 Putative sialic acid transporter [nanT]. 1 488 54.825 T 28-03-2018 IPR004742 Sialic acid transporter GO:0015144|GO:0016021|GO:0034219 AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 Gene3D G3DSA:1.20.1250.20 11 209 9.0E-36 T 28-03-2018 AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 Gene3D G3DSA:1.20.1250.20 272 470 5.3E-19 T 28-03-2018 AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 SUPERFAMILY SSF103473 18 209 5.32E-61 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 SUPERFAMILY SSF103473 259 462 5.32E-61 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS07855 f1754f88d83f380733f86147a6664aaf 496 TIGRFAM TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family 9 441 5.8E-190 T 28-03-2018 IPR004742 Sialic acid transporter GO:0015144|GO:0016021|GO:0034219 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 PIRSF PIRSF036298 1 300 9.2E-167 T 28-03-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Gene3D G3DSA:1.20.5.480 257 291 3.1E-22 T 28-03-2018 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 288 1.4E-21 T 28-03-2018 IPR015246 Formate dehydrogenase, transmembrane AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Gene3D G3DSA:3.30.70.20 43 113 1.7E-21 T 28-03-2018 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 SUPERFAMILY SSF54862 28 272 3.87E-72 T 28-03-2018 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Pfam PF13247 4Fe-4S dicluster domain 92 188 1.8E-24 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 289 4.4E-146 T 28-03-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Gene3D G3DSA:3.30.70.20 114 152 2.4E-16 T 28-03-2018 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Gene3D G3DSA:3.30.70.20 14 42 0.0042 T 28-03-2018 AM348_RS04515 c87f1e2df4842fc42d1bad6cf4811894 300 Gene3D G3DSA:3.30.70.20 153 256 4.3E-22 T 28-03-2018 AM348_RS20725 3ca356867c1d32e13c71fee4a564dae6 410 Pfam PF06224 Winged helix DNA-binding domain 38 381 1.7E-85 T 28-03-2018 IPR009351 Protein of unknown function DUF1006 AM348_RS05630 9127970345af618842ca5296035ecdaf 272 PIRSF PIRSF002854 2 272 1.1E-96 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS05630 9127970345af618842ca5296035ecdaf 272 Gene3D G3DSA:3.40.190.10 33 128 5.7E-16 T 28-03-2018 AM348_RS05630 9127970345af618842ca5296035ecdaf 272 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 15 272 8.2E-147 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS05630 9127970345af618842ca5296035ecdaf 272 Pfam PF03180 NLPA lipoprotein 34 272 9.0E-94 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS05630 9127970345af618842ca5296035ecdaf 272 Gene3D G3DSA:3.40.190.10 129 272 1.7E-46 T 28-03-2018 AM348_RS05630 9127970345af618842ca5296035ecdaf 272 SUPERFAMILY SSF53850 34 272 3.09E-77 T 28-03-2018 AM348_RS08670 c5cb065182aa5e500d0136946abb1c70 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 24 482 4.8E-166 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS08670 c5cb065182aa5e500d0136946abb1c70 487 PIRSF PIRSF002457 2 487 9.8E-132 T 28-03-2018 IPR030676 Citrate carrier CitT-related AM348_RS08670 c5cb065182aa5e500d0136946abb1c70 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 6 486 3.1E-182 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 121 5.3E-13 T 28-03-2018 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 Pfam PF08676 MutL C terminal dimerisation domain 444 571 3.0E-23 T 28-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 SUPERFAMILY SSF118116 443 623 3.01E-42 T 28-03-2018 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 SMART SM01340 212 331 4.3E-54 T 28-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 Gene3D G3DSA:3.30.565.10 1 216 5.9E-36 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS02895 40806c52a5691c00367712e992fdec26 624 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 621 25.449 T 28-03-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 311 1.8E-105 T 28-03-2018 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 SUPERFAMILY SSF54211 191 331 9.1E-35 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS02895 40806c52a5691c00367712e992fdec26 624 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 330 3.1E-35 T 28-03-2018 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 SMART SM00853 447 582 3.6E-15 T 28-03-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 AM348_RS02895 40806c52a5691c00367712e992fdec26 624 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 28-03-2018 IPR014762 DNA mismatch repair, conserved site AM348_RS02895 40806c52a5691c00367712e992fdec26 624 Gene3D G3DSA:3.30.230.10 217 330 4.4E-29 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS02895 40806c52a5691c00367712e992fdec26 624 SUPERFAMILY SSF55874 1 200 1.14E-57 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS18290 81a6a0be97618e0b56346d390d44d16b 382 PIRSF PIRSF003085 2 381 1.7E-128 T 28-03-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AM348_RS18290 81a6a0be97618e0b56346d390d44d16b 382 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 1.7E-103 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS18290 81a6a0be97618e0b56346d390d44d16b 382 Gene3D G3DSA:3.40.50.150 105 372 1.2E-64 T 28-03-2018 AM348_RS18290 81a6a0be97618e0b56346d390d44d16b 382 SUPERFAMILY SSF53335 117 373 1.1E-78 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS22840 d1e01e48677a6a0a54e9d78e7aed0956 225 SUPERFAMILY SSF52540 7 215 2.78E-52 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22840 d1e01e48677a6a0a54e9d78e7aed0956 225 SMART SM00382 32 224 9.4E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22840 d1e01e48677a6a0a54e9d78e7aed0956 225 Gene3D G3DSA:3.40.50.300 5 224 7.5E-56 T 28-03-2018 AM348_RS22840 d1e01e48677a6a0a54e9d78e7aed0956 225 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22840 d1e01e48677a6a0a54e9d78e7aed0956 225 Pfam PF00005 ABC transporter 23 166 5.9E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS08180 d500f4468efbae1df17345e977603003 174 PIRSF PIRSF025550 1 173 1.3E-80 T 28-03-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT AM348_RS08180 d500f4468efbae1df17345e977603003 174 Gene3D G3DSA:3.30.1050.10 23 140 3.0E-17 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS08180 d500f4468efbae1df17345e977603003 174 SUPERFAMILY SSF55718 44 137 5.42E-22 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS08180 d500f4468efbae1df17345e977603003 174 Pfam PF02036 SCP-2 sterol transfer family 42 133 1.1E-17 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 Gene3D G3DSA:3.30.390.10 1 140 4.5E-29 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 TIGRFAM TIGR03247 glucar-dehydr: glucarate dehydratase 6 446 1.8E-271 T 28-03-2018 IPR017653 Glucarate dehydratase GO:0000287|GO:0008872|GO:0019394 KEGG: 00053+4.2.1.40|MetaCyc: PWY-6499 AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 Pfam PF13378 Enolase C-terminal domain-like 189 405 5.2E-37 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 SUPERFAMILY SSF54826 7 137 4.07E-30 T 28-03-2018 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 SUPERFAMILY SSF51604 139 415 3.71E-81 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 Gene3D G3DSA:3.20.20.120 141 413 3.7E-48 T 28-03-2018 IPR029065 Enolase C-terminal domain-like AM348_RS09975 65888e1c22b4c0b55edf12e49acda563 446 SMART SM00922 185 285 1.2E-15 T 28-03-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 28-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 SMART SM00518 3 279 1.7E-140 T 28-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 Pfam PF01261 Xylose isomerase-like TIM barrel 21 239 2.2E-40 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 SUPERFAMILY SSF51658 1 277 4.56E-102 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 44.662 T 28-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 28-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 2 276 5.2E-115 T 28-03-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 28-03-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 AM348_RS13150 299ce903b78f58be8601b30f77f16780 285 Gene3D G3DSA:3.20.20.150 1 285 1.7E-61 T 28-03-2018 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 Gene3D G3DSA:3.40.50.2300 1 113 2.6E-5 T 28-03-2018 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 Gene3D G3DSA:1.10.10.10 114 199 6.1E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 SMART SM00421 139 196 6.4E-20 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 8.7E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 8.7E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 8.7E-12 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 SUPERFAMILY SSF46894 138 197 2.58E-18 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS06400 cf9e05ffefd440361cfe78f7dfa3eb48 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 196 2.9E-20 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS05870 a829eae9f6e1d3a9a8d96fa127c656c4 55 SUPERFAMILY SSF57829 1 53 3.3E-20 T 28-03-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 AM348_RS05870 a829eae9f6e1d3a9a8d96fa127c656c4 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 5.9E-28 T 28-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05870 a829eae9f6e1d3a9a8d96fa127c656c4 55 Pfam PF00471 Ribosomal protein L33 7 53 7.3E-19 T 28-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS05870 a829eae9f6e1d3a9a8d96fa127c656c4 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 28-03-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS05870 a829eae9f6e1d3a9a8d96fa127c656c4 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.857 T 28-03-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 SUPERFAMILY SSF55785 36 156 5.76E-9 T 28-03-2018 IPR000014 PAS domain AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 221 262 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 SMART SM00342 184 266 1.8E-23 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 Pfam PF12833 Helix-turn-helix domain 192 266 2.9E-22 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 250 266 1.6E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 250 1.6E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 Gene3D G3DSA:1.10.10.60 170 221 1.8E-10 T 28-03-2018 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 Gene3D G3DSA:1.10.10.60 222 270 3.2E-13 T 28-03-2018 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 Gene3D G3DSA:3.30.450.20 25 169 1.9E-10 T 28-03-2018 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 Pfam PF08448 PAS fold 49 161 7.8E-18 T 28-03-2018 IPR013656 PAS fold-4 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 SUPERFAMILY SSF46689 220 266 4.93E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS02160 8cc0fac96a83dc368b2c37bc0f2b6cb1 271 SUPERFAMILY SSF46689 167 217 2.78E-5 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 Gene3D G3DSA:1.10.10.10 3 146 6.5E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 28-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 SUPERFAMILY SSF46785 3 141 3.91E-34 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 2.3E-28 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 2.3E-28 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 2.3E-28 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 2.3E-28 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 3 145 43.466 T 28-03-2018 IPR023071 Transcriptional regulator, SlyA AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 SMART SM00347 24 125 1.6E-31 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS18190 50dc29a6d35cc7f5be26fc2ac669f3c5 146 Pfam PF01047 MarR family 31 89 1.4E-18 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS01955 8f1e3c0d48599df06f6277ba08d892b7 171 Gene3D G3DSA:3.40.630.30 1 171 6.5E-22 T 28-03-2018 AM348_RS01955 8f1e3c0d48599df06f6277ba08d892b7 171 SUPERFAMILY SSF55729 1 138 6.75E-22 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS01955 8f1e3c0d48599df06f6277ba08d892b7 171 Pfam PF13673 Acetyltransferase (GNAT) domain 46 140 2.8E-9 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 23.145 T 28-03-2018 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Gene3D G3DSA:3.40.50.300 36 133 1.6E-4 T 28-03-2018 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Gene3D G3DSA:3.40.50.300 616 938 9.6E-55 T 28-03-2018 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 SUPERFAMILY SSF52540 613 911 2.35E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Gene3D G3DSA:3.40.50.300 1 35 2.2E-8 T 28-03-2018 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Gene3D G3DSA:3.30.190.20 134 248 2.0E-42 T 28-03-2018 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Gene3D G3DSA:1.10.8.280 285 405 7.9E-38 T 28-03-2018 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Pfam PF00005 ABC transporter 806 860 1.2E-5 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 925 0.0 T 28-03-2018 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 SUPERFAMILY SSF52540 4 204 3.22E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 SUPERFAMILY SSF52540 430 569 3.22E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 Gene3D G3DSA:3.40.50.300 412 615 6.9E-22 T 28-03-2018 AM348_RS03495 4fab060c6d38bfcdaa1151f4b94384c6 940 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS04350 dafbf609c6b07038fe5a7db30e878364 434 Pfam PF00939 Sodium:sulfate symporter transmembrane region 18 433 3.3E-20 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS20545 975e7f2c889e2cbe0f009831bbf01f36 150 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 9.4E-31 T 28-03-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain AM348_RS20545 975e7f2c889e2cbe0f009831bbf01f36 150 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 9.0E-69 T 28-03-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 AM348_RS20545 975e7f2c889e2cbe0f009831bbf01f36 150 Pfam PF06303 MatP N-terminal domain 2 85 2.2E-43 T 28-03-2018 IPR035087 MatP, N-terminal AM348_RS20545 975e7f2c889e2cbe0f009831bbf01f36 150 Gene3D G3DSA:1.10.3990.20 78 139 1.4E-4 T 28-03-2018 AM348_RS20545 975e7f2c889e2cbe0f009831bbf01f36 150 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 30.817 T 28-03-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 104.158 T 28-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 SUPERFAMILY SSF111304 2 199 2.75E-72 T 28-03-2018 IPR023627 Recombination protein RecR AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 28-03-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 Gene3D G3DSA:3.40.1360.10 78 171 3.9E-35 T 28-03-2018 AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 SMART SM00493 81 166 1.2E-17 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 Pfam PF02132 RecR protein 41 77 1.1E-15 T 28-03-2018 IPR023628 Recombination protein RecR, C4-type zinc finger AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 6.4E-84 T 28-03-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 Pfam PF13662 Toprim domain 82 172 4.4E-23 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS22970 696ce1838ddb4b73b4ce277dba0dbe33 201 Gene3D G3DSA:1.10.150.20 5 41 0.37 T 28-03-2018 AM348_RS03360 6cd0697f5192ac24273d7ac20bb6a417 286 Gene3D G3DSA:3.20.20.70 1 286 3.6E-91 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS03360 6cd0697f5192ac24273d7ac20bb6a417 286 SUPERFAMILY SSF51569 1 285 3.48E-87 T 28-03-2018 AM348_RS03360 6cd0697f5192ac24273d7ac20bb6a417 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 4 285 1.0E-79 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS03360 6cd0697f5192ac24273d7ac20bb6a417 286 PIRSF PIRSF001359 1 286 4.5E-100 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS03360 6cd0697f5192ac24273d7ac20bb6a417 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 7 285 9.1E-92 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS03360 6cd0697f5192ac24273d7ac20bb6a417 286 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 Gene3D G3DSA:1.10.3860.10 1 400 9.1E-76 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 3.8E-10 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 PRINTS PR00173 Glutamate-aspartate symporter signature 347 367 3.8E-10 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 PRINTS PR00173 Glutamate-aspartate symporter signature 209 228 3.8E-10 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 3.8E-10 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 3.8E-10 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 Pfam PF00375 Sodium:dicarboxylate symporter family 14 392 1.4E-77 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS02030 2b78629703d1a08cdaaa1f1043332059 410 SUPERFAMILY SSF118215 13 393 2.09E-77 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS08700 a769e85565541000ea330ae0846606ef 272 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 264 4.7E-106 T 28-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AM348_RS08700 a769e85565541000ea330ae0846606ef 272 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 271 18.739 T 28-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AM348_RS08700 a769e85565541000ea330ae0846606ef 272 Pfam PF02673 Bacitracin resistance protein BacA 10 265 5.1E-88 T 28-03-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 67 91 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 44 66 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 113 136 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 185 208 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 211 228 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 253 279 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 229 247 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 156 180 1.2E-69 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 13 37 5.4E-6 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 PIRSF PIRSF000310 2 367 1.1E-136 T 28-03-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 Gene3D G3DSA:4.10.480.10 232 309 3.4E-29 T 28-03-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 Gene3D G3DSA:3.40.50.700 42 231 3.1E-55 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 224 303 1.2E-26 T 28-03-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 59 204 1.9E-32 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 SUPERFAMILY SSF56770 46 302 1.68E-84 T 28-03-2018 AM348_RS08980 3f0cd77fcb809d164485187b2939d44d 372 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 3 365 3.5E-192 T 28-03-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 Gene3D G3DSA:1.10.287.80 2 41 2.9E-18 T 28-03-2018 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 Gene3D G3DSA:1.10.287.80 240 282 5.3E-14 T 28-03-2018 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 Gene3D G3DSA:3.40.1380.10 42 239 9.0E-75 T 28-03-2018 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.516 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 1.6E-37 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.6E-37 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 1.6E-37 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.6E-37 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 Pfam PF00231 ATP synthase 5 286 3.1E-96 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 28-03-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 1.0E-112 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS05280 3af84fff2ef225c304bc786916123d9f 287 SUPERFAMILY SSF52943 2 287 3.27E-97 T 28-03-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 AM348_RS00255 e7487faf81c522b8a180b8e1a791d85a 597 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 573 582 - T 28-03-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 AM348_RS00255 e7487faf81c522b8a180b8e1a791d85a 597 Pfam PF00374 Nickel-dependent hydrogenase 54 582 4.6E-220 T 28-03-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AM348_RS00255 e7487faf81c522b8a180b8e1a791d85a 597 Gene3D G3DSA:1.10.645.10 13 582 2.9E-192 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS00255 e7487faf81c522b8a180b8e1a791d85a 597 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 54 79 - T 28-03-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 AM348_RS00255 e7487faf81c522b8a180b8e1a791d85a 597 SUPERFAMILY SSF56762 12 582 1.96E-166 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 59 101 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 Gene3D G3DSA:1.10.10.60 2 59 1.5E-14 T 28-03-2018 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 Gene3D G3DSA:1.10.10.60 60 112 1.7E-13 T 28-03-2018 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 SUPERFAMILY SSF46689 59 108 2.59E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 Pfam PF12833 Helix-turn-helix domain 28 106 3.7E-23 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 SUPERFAMILY SSF46689 6 56 2.33E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 SMART SM00342 22 105 2.0E-33 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 74 89 3.5E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS22480 e1572476dea5d88c511da44d14e4c77e 113 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 89 105 3.5E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 SUPERFAMILY SSF48498 86 192 3.03E-7 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 SUPERFAMILY SSF46689 5 84 5.99E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.803 T 28-03-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 Gene3D G3DSA:1.10.357.10 61 193 4.1E-17 T 28-03-2018 AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 28-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 61 5.1E-9 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS05840 579c23d7fcc955dbeedca8685f6f8b6d 198 Gene3D G3DSA:1.10.10.60 3 60 1.6E-10 T 28-03-2018 AM348_RS04240 262c16120e48853c41791da798ec834a 105 Gene3D G3DSA:1.10.140.10 3 103 5.4E-59 T 28-03-2018 IPR023453 Methionine repressor MetJ domain AM348_RS04240 262c16120e48853c41791da798ec834a 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 2.0E-46 T 28-03-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 AM348_RS04240 262c16120e48853c41791da798ec834a 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 3.9E-58 T 28-03-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 AM348_RS04240 262c16120e48853c41791da798ec834a 105 SUPERFAMILY SSF47598 2 105 7.78E-58 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS04240 262c16120e48853c41791da798ec834a 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.899 T 28-03-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 AM348_RS20275 cdef258c3cea906f6e584229aacc9f03 235 SUPERFAMILY SSF53167 2 233 3.27E-81 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS20275 cdef258c3cea906f6e584229aacc9f03 235 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 234 45.238 T 28-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM348_RS20275 cdef258c3cea906f6e584229aacc9f03 235 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 232 2.3E-91 T 28-03-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM348_RS20275 cdef258c3cea906f6e584229aacc9f03 235 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 28-03-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS20275 cdef258c3cea906f6e584229aacc9f03 235 Gene3D G3DSA:3.40.50.1580 8 235 9.3E-48 T 28-03-2018 AM348_RS20275 cdef258c3cea906f6e584229aacc9f03 235 Pfam PF01048 Phosphorylase superfamily 15 220 1.0E-31 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 358 397 2.1E-9 T 28-03-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 Gene3D G3DSA:1.10.10.60 368 395 1.8E-6 T 28-03-2018 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 SMART SM00382 113 257 2.2E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 Gene3D G3DSA:1.10.8.60 267 367 8.3E-24 T 28-03-2018 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 306 315 - T 28-03-2018 IPR025944 Sigma-54 interaction domain, conserved site AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 Gene3D G3DSA:3.40.50.300 89 266 7.2E-24 T 28-03-2018 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 SUPERFAMILY SSF46689 345 397 1.61E-6 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 Pfam PF00158 Sigma-54 interaction domain 93 260 1.6E-64 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 SUPERFAMILY SSF52540 92 334 5.23E-67 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06320 0ee227624b6975b74e1251c38777a9f2 400 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 117 130 - T 28-03-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 AM348_RS10825 8a397eed758704a58d8e7aeae1859422 390 Gene3D G3DSA:3.90.1150.10 276 383 4.4E-14 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS10825 8a397eed758704a58d8e7aeae1859422 390 SUPERFAMILY SSF53383 23 386 3.06E-80 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS10825 8a397eed758704a58d8e7aeae1859422 390 Gene3D G3DSA:3.40.640.10 74 275 6.2E-31 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS10825 8a397eed758704a58d8e7aeae1859422 390 Pfam PF00155 Aminotransferase class I and II 64 334 5.6E-30 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS10825 8a397eed758704a58d8e7aeae1859422 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 384 1.2E-117 T 28-03-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM348_RS10825 8a397eed758704a58d8e7aeae1859422 390 Gene3D G3DSA:3.90.1150.10 1 73 4.0E-7 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 187 371 1.5E-72 T 28-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 SUPERFAMILY SSF52507 3 180 6.02E-58 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 Gene3D G3DSA:3.40.50.1950 1 184 2.1E-52 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 SUPERFAMILY SSF102645 184 401 6.8E-79 T 28-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 Pfam PF02441 Flavoprotein 6 177 2.1E-41 T 28-03-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 Gene3D G3DSA:3.40.50.10300 185 405 1.3E-66 T 28-03-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 AM348_RS05855 ad4c466693c4cb837a2bdf77b88ac93c 406 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 3 397 8.0E-163 T 28-03-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 Gene3D G3DSA:1.20.58.340 249 316 1.0E-20 T 28-03-2018 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 SUPERFAMILY SSF144083 251 314 1.28E-20 T 28-03-2018 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 Gene3D G3DSA:1.20.58.340 131 248 1.8E-9 T 28-03-2018 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 Gene3D G3DSA:3.30.460.20 1 124 1.2E-10 T 28-03-2018 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 SUPERFAMILY SSF143865 1 255 2.35E-39 T 28-03-2018 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 Pfam PF01544 CorA-like Mg2+ transporter protein 25 312 3.9E-57 T 28-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM348_RS04890 8d452e17f369213c48d6b096e91654de 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 316 4.0E-110 T 28-03-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 AM348_RS14720 5b0d4fd15d9e7b8ee78e9e17174023c9 204 Pfam PF00182 Chitinase class I 101 163 1.3E-6 T 28-03-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM348_RS14720 5b0d4fd15d9e7b8ee78e9e17174023c9 204 SUPERFAMILY SSF53955 19 203 6.19E-43 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS14720 5b0d4fd15d9e7b8ee78e9e17174023c9 204 Gene3D G3DSA:3.30.20.10 94 151 8.4E-20 T 28-03-2018 AM348_RS09920 500e415c7b19d45f2d3ab6349b23ebd4 455 Gene3D G3DSA:3.30.1330.90 10 158 4.7E-51 T 28-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM348_RS09920 500e415c7b19d45f2d3ab6349b23ebd4 455 Pfam PF03315 Serine dehydratase beta chain 3 155 4.9E-56 T 28-03-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM348_RS09920 500e415c7b19d45f2d3ab6349b23ebd4 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 4.5E-221 T 28-03-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 AM348_RS09920 500e415c7b19d45f2d3ab6349b23ebd4 455 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.4E-94 T 28-03-2018 IPR005130 Serine dehydratase-like, alpha subunit AM348_RS09920 500e415c7b19d45f2d3ab6349b23ebd4 455 Gene3D G3DSA:1.10.4100.10 257 445 1.3E-32 T 28-03-2018 AM348_RS09920 500e415c7b19d45f2d3ab6349b23ebd4 455 SUPERFAMILY SSF143548 16 158 2.88E-45 T 28-03-2018 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 AM348_RS21005 87aa7c34956045b00f7d698a8ead6b2f 202 SMART SM00014 61 169 7.9E-29 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS21005 87aa7c34956045b00f7d698a8ead6b2f 202 Gene3D G3DSA:1.20.144.10 4 176 1.1E-22 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS21005 87aa7c34956045b00f7d698a8ead6b2f 202 Pfam PF01569 PAP2 superfamily 65 170 1.3E-12 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS21005 87aa7c34956045b00f7d698a8ead6b2f 202 SUPERFAMILY SSF48317 2 200 1.31E-38 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS23180 d3dc945e79c3db33f150866a03fbd974 124 Pfam PF12836 Helix-hairpin-helix motif 61 120 8.3E-19 T 28-03-2018 AM348_RS23180 d3dc945e79c3db33f150866a03fbd974 124 SUPERFAMILY SSF47781 45 120 9.12E-24 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS23180 d3dc945e79c3db33f150866a03fbd974 124 Gene3D G3DSA:1.10.150.280 29 123 1.2E-22 T 28-03-2018 AM348_RS23180 d3dc945e79c3db33f150866a03fbd974 124 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 56 124 4.1E-35 T 28-03-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 6.3E-25 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 6.3E-25 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 6.3E-25 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 6.3E-25 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 28-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 Gene3D G3DSA:1.10.10.10 7 144 5.9E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 SUPERFAMILY SSF46785 4 143 7.05E-30 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 SMART SM00347 31 132 8.8E-31 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS17725 1e388a915a65d6d3438fd253405cf5c9 144 Pfam PF01047 MarR family 38 96 4.1E-17 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS03715 a106a02020cc53bae301a6637900313e 317 Gene3D G3DSA:1.10.10.60 3 54 6.7E-20 T 28-03-2018 AM348_RS03715 a106a02020cc53bae301a6637900313e 317 Pfam PF13936 Helix-turn-helix domain 14 47 1.5E-8 T 28-03-2018 IPR025246 Transposase IS30-like HTH domain AM348_RS03715 a106a02020cc53bae301a6637900313e 317 SUPERFAMILY SSF100950 64 317 6.11E-66 T 28-03-2018 AM348_RS03715 a106a02020cc53bae301a6637900313e 317 Gene3D G3DSA:3.40.50.1360 55 317 3.0E-34 T 28-03-2018 AM348_RS03715 a106a02020cc53bae301a6637900313e 317 SUPERFAMILY SSF46689 9 55 8.78E-6 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS03715 a106a02020cc53bae301a6637900313e 317 Pfam PF04198 Putative sugar-binding domain 61 317 9.3E-78 T 28-03-2018 IPR007324 Sugar-binding domain, putative GO:0030246 AM348_RS17450 19ca22e477498fc6118c4efb2fc4e0eb 218 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 43 51 - T 28-03-2018 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS17450 19ca22e477498fc6118c4efb2fc4e0eb 218 SMART SM00882 5 201 2.2E-74 T 28-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS17450 19ca22e477498fc6118c4efb2fc4e0eb 218 Pfam PF01144 Coenzyme A transferase 5 200 1.4E-41 T 28-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS17450 19ca22e477498fc6118c4efb2fc4e0eb 218 SUPERFAMILY SSF100950 3 215 4.57E-76 T 28-03-2018 AM348_RS17450 19ca22e477498fc6118c4efb2fc4e0eb 218 Gene3D G3DSA:3.40.1080.10 2 213 1.9E-67 T 28-03-2018 AM348_RS17450 19ca22e477498fc6118c4efb2fc4e0eb 218 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 4.7E-100 T 28-03-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 AM348_RS01800 a22fc282cbe0df4d2a6fdeaa3a051de6 516 SUPERFAMILY SSF51998 24 470 6.41E-89 T 28-03-2018 AM348_RS01800 a22fc282cbe0df4d2a6fdeaa3a051de6 516 Gene3D G3DSA:3.20.70.20 169 475 3.1E-33 T 28-03-2018 AM348_RS01800 a22fc282cbe0df4d2a6fdeaa3a051de6 516 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 11 504 1.1E-236 T 28-03-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted AM348_RS01800 a22fc282cbe0df4d2a6fdeaa3a051de6 516 Pfam PF11230 Protein of unknown function (DUF3029) 22 504 4.1E-222 T 28-03-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted AM348_RS01800 a22fc282cbe0df4d2a6fdeaa3a051de6 516 PIRSF PIRSF028991 6 516 6.8E-276 T 28-03-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.2E-7 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.2E-7 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.2E-7 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 Gene3D G3DSA:1.10.1660.10 56 135 1.2E-14 T 28-03-2018 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 SMART SM00422 1 70 1.3E-26 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 1.5E-61 T 28-03-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 Pfam PF13411 MerR HTH family regulatory protein 2 67 2.1E-17 T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 Gene3D G3DSA:1.10.1660.10 1 55 3.6E-19 T 28-03-2018 AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 SUPERFAMILY SSF46955 2 126 1.53E-33 T 28-03-2018 IPR009061 Putative DNA-binding domain AM348_RS22865 6041013b68395bceceba9cc84ef8d7fc 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 28-03-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 AM348_RS22930 998f473b1d3c608679659914b0574abb 406 SUPERFAMILY SSF103473 21 401 2.62E-55 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS22930 998f473b1d3c608679659914b0574abb 406 Pfam PF07690 Major Facilitator Superfamily 31 355 3.0E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS22930 998f473b1d3c608679659914b0574abb 406 Gene3D G3DSA:1.20.1250.20 20 212 6.8E-20 T 28-03-2018 AM348_RS22930 998f473b1d3c608679659914b0574abb 406 Gene3D G3DSA:1.20.1250.20 217 405 1.7E-25 T 28-03-2018 AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 Pfam PF12704 MacB-like periplasmic core domain 272 491 1.8E-41 T 28-03-2018 IPR025857 MacB-like periplasmic core domain AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 Gene3D G3DSA:3.40.50.300 1 239 4.2E-69 T 28-03-2018 AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 Pfam PF00005 ABC transporter 24 172 1.3E-33 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 SUPERFAMILY SSF52540 4 228 4.15E-70 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 SMART SM00382 33 220 3.0E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13575 03b7fc4fc9e3a9643add7a7f45a59cfb 648 Pfam PF02687 FtsX-like permease family 553 641 2.3E-10 T 28-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 52 1.0E-17 T 28-03-2018 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 28-03-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08620 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 28-03-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS22875 2928e8effeced2abfe6076c687e96bc7 274 Gene3D G3DSA:3.40.50.1980 20 126 2.2E-25 T 28-03-2018 AM348_RS22875 2928e8effeced2abfe6076c687e96bc7 274 Pfam PF01497 Periplasmic binding protein 24 250 1.4E-28 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS22875 2928e8effeced2abfe6076c687e96bc7 274 Gene3D G3DSA:3.40.50.1980 127 274 3.3E-30 T 28-03-2018 AM348_RS22875 2928e8effeced2abfe6076c687e96bc7 274 SUPERFAMILY SSF53807 21 273 7.06E-53 T 28-03-2018 AM348_RS07345 cf13c6811d5017a3d62f69e24c4fb146 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 3.9E-64 T 28-03-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 AM348_RS07345 cf13c6811d5017a3d62f69e24c4fb146 201 SUPERFAMILY SSF52166 10 200 4.71E-73 T 28-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AM348_RS07345 cf13c6811d5017a3d62f69e24c4fb146 201 Gene3D G3DSA:3.40.1370.10 141 199 1.5E-11 T 28-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AM348_RS07345 cf13c6811d5017a3d62f69e24c4fb146 201 Gene3D G3DSA:3.40.1370.10 4 140 4.0E-48 T 28-03-2018 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 AM348_RS07345 cf13c6811d5017a3d62f69e24c4fb146 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 34.057 T 28-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07345 cf13c6811d5017a3d62f69e24c4fb146 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 5.1E-75 T 28-03-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 SMART SM00387 233 349 3.3E-32 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 SUPERFAMILY SSF47384 121 187 2.75E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 186 2.4E-14 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 Gene3D G3DSA:3.30.565.10 195 349 1.9E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 Gene3D G3DSA:1.10.287.130 118 187 6.2E-14 T 28-03-2018 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 SMART SM00388 129 194 2.1E-13 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 SMART SM00091 7 75 5.9E-7 T 28-03-2018 IPR000014 PAS domain AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 Gene3D G3DSA:3.30.450.20 9 104 1.1E-8 T 28-03-2018 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 SUPERFAMILY SSF55785 11 100 7.15E-5 T 28-03-2018 IPR000014 PAS domain AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 3.1E-16 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 SUPERFAMILY SSF55874 198 346 4.45E-38 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 1.7E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 1.7E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS04630 877a1ab7add0581e014aee6b136d1c5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 1.7E-11 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 28-03-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 SUPERFAMILY SSF55804 2 140 2.35E-39 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 PRINTS PR00107 Phosphocarrier protein signature 297 313 3.7E-18 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 PRINTS PR00107 Phosphocarrier protein signature 340 357 3.7E-18 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 PRINTS PR00107 Phosphocarrier protein signature 325 340 3.7E-18 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 Pfam PF00381 PTS HPr component phosphorylation site 287 368 3.0E-25 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 SUPERFAMILY SSF55594 287 375 3.79E-24 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 28-03-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 2.7E-22 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 139 2.3E-29 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 Gene3D G3DSA:3.40.930.10 145 278 0.046 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 Gene3D G3DSA:3.40.930.10 3 143 6.7E-35 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 SUPERFAMILY SSF55804 150 276 2.27E-9 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS13115 5156d2951e46512adc509272dfd3679f 376 Gene3D G3DSA:3.30.1340.10 282 369 4.4E-26 T 28-03-2018 IPR000032 Phosphocarrier protein HPr-like AM348_RS17920 10678bc69ca5bb23014b6dc58bc3fca5 208 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 3 201 21.615 T 28-03-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 AM348_RS17920 10678bc69ca5bb23014b6dc58bc3fca5 208 Pfam PF01794 Ferric reductase like transmembrane component 48 161 7.3E-15 T 28-03-2018 IPR013130 Ferric reductase transmembrane component-like domain AM348_RS12275 1ed617438e9b6e422252e7e8e3d9333b 115 Gene3D G3DSA:3.30.2120.10 1 98 3.2E-4 T 28-03-2018 AM348_RS12275 1ed617438e9b6e422252e7e8e3d9333b 115 Pfam PF10765 Protein of unknown function (DUF2591) 2 105 1.9E-17 T 28-03-2018 IPR019701 Bacteriophage P22, NinX AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 157 3.9E-62 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 78 0.001 T 28-03-2018 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 Pfam PF01467 Cytidylyltransferase-like 6 134 4.6E-22 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 37.232 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 62 1.6E-18 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.3E-53 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.3E-53 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.3E-53 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.3E-53 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.3E-53 T 28-03-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 SUPERFAMILY SSF52374 3 157 1.72E-46 T 28-03-2018 AM348_RS05880 f03cd3f5195eef9f384070d5397bf5c8 159 Gene3D G3DSA:3.40.50.620 1 159 1.6E-35 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22135 e10533b66582d4ae9968e49cf4ae40aa 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 3.8E-29 T 28-03-2018 IPR007454 Uncharacterised protein family UPF0250 AM348_RS22135 e10533b66582d4ae9968e49cf4ae40aa 87 SUPERFAMILY SSF117991 1 87 1.7E-31 T 28-03-2018 IPR027471 YbeD-like domain AM348_RS22135 e10533b66582d4ae9968e49cf4ae40aa 87 Gene3D G3DSA:3.30.70.260 5 87 1.0E-30 T 28-03-2018 AM348_RS22135 e10533b66582d4ae9968e49cf4ae40aa 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.681 T 28-03-2018 IPR007454 Uncharacterised protein family UPF0250 AM348_RS03305 0e695b2ba538be5d5d765b77ebc0c233 144 SUPERFAMILY SSF55729 5 139 1.23E-25 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS03305 0e695b2ba538be5d5d765b77ebc0c233 144 Gene3D G3DSA:3.40.630.30 1 136 1.4E-22 T 28-03-2018 AM348_RS03305 0e695b2ba538be5d5d765b77ebc0c233 144 Pfam PF00583 Acetyltransferase (GNAT) family 41 133 2.2E-13 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS09125 6d2728ad616a5db1dcbc4a793678c234 185 Pfam PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ 5 180 7.4E-50 T 28-03-2018 IPR017739 Type VI secretion system-associated, VCA0119 AM348_RS19370 e0d9e32c349cf3a3dd2b2d07da31cc98 207 SUPERFAMILY SSF55120 26 206 6.08E-43 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS19370 e0d9e32c349cf3a3dd2b2d07da31cc98 207 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 4.3E-60 T 28-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS19370 e0d9e32c349cf3a3dd2b2d07da31cc98 207 Gene3D G3DSA:3.30.70.580 12 109 1.8E-14 T 28-03-2018 AM348_RS19370 e0d9e32c349cf3a3dd2b2d07da31cc98 207 Pfam PF00849 RNA pseudouridylate synthase 31 176 1.0E-13 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS19370 e0d9e32c349cf3a3dd2b2d07da31cc98 207 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 28-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS19370 e0d9e32c349cf3a3dd2b2d07da31cc98 207 Gene3D G3DSA:3.30.70.1560 110 192 1.5E-24 T 28-03-2018 AM348_RS17205 0852207aebfbff108d4c73ff4a9dde57 706 Gene3D G3DSA:2.40.170.20 166 702 2.0E-79 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS17205 0852207aebfbff108d4c73ff4a9dde57 706 SUPERFAMILY SSF56935 22 702 2.96E-120 T 28-03-2018 AM348_RS17205 0852207aebfbff108d4c73ff4a9dde57 706 Pfam PF00593 TonB dependent receptor 266 701 3.2E-52 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS17205 0852207aebfbff108d4c73ff4a9dde57 706 Gene3D G3DSA:2.170.130.10 23 163 6.2E-27 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS17205 0852207aebfbff108d4c73ff4a9dde57 706 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 157 2.4E-22 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS11260 7ffd54136b106ec6f8038122bf424646 216 PIRSF PIRSF016938 1 205 6.5E-35 T 28-03-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0006950|GO:0016989 AM348_RS11260 7ffd54136b106ec6f8038122bf424646 216 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 186 6.9E-26 T 28-03-2018 IPR005573 Anti sigma-E protein RseA, C-terminal AM348_RS11260 7ffd54136b106ec6f8038122bf424646 216 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 2.5E-36 T 28-03-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 AM348_RS11260 7ffd54136b106ec6f8038122bf424646 216 SUPERFAMILY SSF89069 1 66 4.58E-22 T 28-03-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 AM348_RS05190 14d4255084ea8dd1795182d182fc4eeb 296 Gene3D G3DSA:3.40.50.2300 141 293 7.4E-43 T 28-03-2018 AM348_RS05190 14d4255084ea8dd1795182d182fc4eeb 296 Gene3D G3DSA:3.40.50.2300 25 140 4.1E-26 T 28-03-2018 AM348_RS05190 14d4255084ea8dd1795182d182fc4eeb 296 Pfam PF13407 Periplasmic binding protein domain 29 281 4.8E-58 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS05190 14d4255084ea8dd1795182d182fc4eeb 296 SUPERFAMILY SSF53822 26 295 3.05E-88 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Gene3D G3DSA:2.40.50.140 66 131 3.2E-15 T 28-03-2018 AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 4.1E-19 T 28-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 SUPERFAMILY SSF50249 132 189 6.34E-15 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 PIRSF PIRSF005901 1 190 3.3E-61 T 28-03-2018 IPR020599 Translation elongation factor P/YeiP AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 28-03-2018 IPR013852 Translation elongation factor P/YeiP, conserved site AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 SUPERFAMILY SSF50249 67 130 2.66E-11 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 SMART SM01185 69 125 1.1E-13 T 28-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 SUPERFAMILY SSF50104 1 65 1.93E-11 T 28-03-2018 IPR008991 Translation protein SH3-like domain AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Gene3D G3DSA:2.40.50.140 133 188 4.5E-21 T 28-03-2018 AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 62 9.6E-17 T 28-03-2018 IPR013185 Translation elongation factor, KOW-like AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Gene3D G3DSA:2.30.30.30 2 63 3.6E-16 T 28-03-2018 IPR014722 Ribosomal protein L2 domain 2 AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 SMART SM00841 133 188 3.5E-27 T 28-03-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 43.345 T 28-03-2018 IPR011897 Translation elongation factor P-like, YeiP AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 1.7E-100 T 28-03-2018 IPR011897 Translation elongation factor P-like, YeiP AM348_RS13100 39e9417c69764673dd23cc2f05bbf0ce 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 124 1.7E-13 T 28-03-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 AM348_RS05625 765b05ea38b5859a7d6f5530171d9322 308 Pfam PF04754 Putative transposase, YhgA-like 8 209 3.0E-90 T 28-03-2018 IPR006842 Transposase (putative), YhgA-like AM348_RS05625 765b05ea38b5859a7d6f5530171d9322 308 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 303 8.3E-58 T 28-03-2018 IPR010106 Recombination-promoting nuclease RpnA AM348_RS10680 4744cadf2574598ee9e27118e7275bfa 149 Gene3D G3DSA:3.10.350.10 93 149 1.2E-17 T 28-03-2018 AM348_RS10680 4744cadf2574598ee9e27118e7275bfa 149 SMART SM00257 98 147 7.9E-15 T 28-03-2018 IPR018392 LysM domain AM348_RS10680 4744cadf2574598ee9e27118e7275bfa 149 SMART SM00749 28 91 9.6E-9 T 28-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM348_RS10680 4744cadf2574598ee9e27118e7275bfa 149 Pfam PF01476 LysM domain 99 147 8.1E-15 T 28-03-2018 IPR018392 LysM domain AM348_RS10680 4744cadf2574598ee9e27118e7275bfa 149 Pfam PF04972 BON domain 23 88 3.3E-10 T 28-03-2018 IPR007055 BON domain AM348_RS10680 4744cadf2574598ee9e27118e7275bfa 149 SUPERFAMILY SSF54106 97 147 7.72E-9 T 28-03-2018 IPR018392 LysM domain AM348_RS23485 85b260987f821684d441224f3dec0f12 94 Hamap MF_01537 UPF0345 protein YaiE [yaiE]. 1 94 26.87 T 28-03-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase AM348_RS23485 85b260987f821684d441224f3dec0f12 94 SUPERFAMILY SSF51182 1 94 3.06E-35 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS23485 85b260987f821684d441224f3dec0f12 94 Gene3D G3DSA:2.60.120.10 3 93 5.3E-37 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS23485 85b260987f821684d441224f3dec0f12 94 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 1.4E-35 T 28-03-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 SUPERFAMILY SSF46894 147 204 8.16E-15 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.6E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.6E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.6E-8 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 SMART SM00421 149 206 3.8E-16 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 6.2E-15 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01895 598891816fd2ba9c7eb4d9d873f3eb9e 225 Gene3D G3DSA:1.10.10.10 47 212 2.6E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 SUPERFAMILY SSF53850 91 293 1.23E-18 T 28-03-2018 AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 Gene3D G3DSA:3.40.190.10 92 183 1.9E-5 T 28-03-2018 AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 Gene3D G3DSA:1.10.10.10 2 87 2.3E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 Pfam PF03466 LysR substrate binding domain 91 280 2.3E-18 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 Gene3D G3DSA:3.40.190.10 184 270 6.6E-5 T 28-03-2018 AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 9.3E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09580 0edd8933dee77290e32b68dc58babb4a 309 SUPERFAMILY SSF46785 8 90 9.09E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS00540 4bbf43e1080aa6dffe8fbe5fc6e74c63 155 SUPERFAMILY SSF53098 4 141 7.33E-58 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS00540 4bbf43e1080aa6dffe8fbe5fc6e74c63 155 Gene3D G3DSA:3.30.420.10 1 155 1.9E-53 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS00540 4bbf43e1080aa6dffe8fbe5fc6e74c63 155 Pfam PF00075 RNase H 3 141 6.5E-54 T 28-03-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 AM348_RS00540 4bbf43e1080aa6dffe8fbe5fc6e74c63 155 Hamap MF_00042 Ribonuclease H [rnhA]. 2 150 39.473 T 28-03-2018 IPR022892 Ribonuclease HI GO:0004523 AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 Pfam PF00083 Sugar (and other) transporter 28 225 5.7E-18 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 Gene3D G3DSA:1.20.1250.20 236 438 5.4E-18 T 28-03-2018 AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 SUPERFAMILY SSF103473 19 436 9.29E-59 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 Pfam PF07690 Major Facilitator Superfamily 264 432 4.3E-10 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 30 425 6.5E-149 T 28-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM348_RS19765 5593dbe6268dde6e2172b232fcb13bef 438 Gene3D G3DSA:1.20.1250.20 12 234 4.0E-22 T 28-03-2018 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 SUPERFAMILY SSF46785 3 77 1.18E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 Gene3D G3DSA:1.10.10.10 5 69 7.3E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 1.7E-22 T 28-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 SUPERFAMILY SSF55252 82 151 1.96E-19 T 28-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 Gene3D G3DSA:3.30.1360.40 76 151 2.7E-26 T 28-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 4.8E-24 T 28-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 4.8E-24 T 28-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 4.8E-24 T 28-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 4.8E-24 T 28-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 9 152 6.7E-48 T 28-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 60.278 T 28-03-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 4.0E-30 T 28-03-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 AM348_RS07780 702c79d70e3120949b03f21597cc5a3e 156 Pfam PF01316 Arginine repressor, DNA binding domain 5 74 2.0E-25 T 28-03-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 AM348_RS07725 ece5b1d1a2d407f84456d05626315b85 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 1.8E-42 T 28-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AM348_RS07725 ece5b1d1a2d407f84456d05626315b85 162 Pfam PF04093 rod shape-determining protein MreD 5 155 9.4E-46 T 28-03-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 AM348_RS07725 ece5b1d1a2d407f84456d05626315b85 162 PIRSF PIRSF018472 2 162 4.2E-57 T 28-03-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type AM348_RS06130 5f4363a79671558dcaf0e8086ec11e2a 157 Gene3D G3DSA:3.30.70.20 112 153 4.4E-6 T 28-03-2018 AM348_RS06130 5f4363a79671558dcaf0e8086ec11e2a 157 Pfam PF13247 4Fe-4S dicluster domain 54 142 4.6E-12 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS06130 5f4363a79671558dcaf0e8086ec11e2a 157 Gene3D G3DSA:3.30.70.20 71 111 8.5E-16 T 28-03-2018 AM348_RS06130 5f4363a79671558dcaf0e8086ec11e2a 157 Gene3D G3DSA:3.30.70.20 2 70 1.6E-11 T 28-03-2018 AM348_RS06130 5f4363a79671558dcaf0e8086ec11e2a 157 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS06130 5f4363a79671558dcaf0e8086ec11e2a 157 SUPERFAMILY SSF54862 2 143 5.23E-38 T 28-03-2018 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Gene3D G3DSA:3.40.50.740 461 794 2.3E-29 T 28-03-2018 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 SUPERFAMILY SSF50692 873 1020 8.82E-24 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Gene3D G3DSA:2.40.40.20 848 1021 1.6E-24 T 28-03-2018 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 SUPERFAMILY SSF53706 137 864 4.23E-112 T 28-03-2018 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 SUPERFAMILY SSF53706 74 110 4.23E-112 T 28-03-2018 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 76 152 3.7E-5 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Pfam PF01568 Molydopterin dinucleotide binding domain 892 992 8.9E-13 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 SMART SM00926 71 153 1.3E-15 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Gene3D G3DSA:3.40.50.740 158 398 8.2E-23 T 28-03-2018 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Pfam PF00384 Molybdopterin oxidoreductase 242 683 1.5E-13 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS18605 8fd6e35fc9519835fcafdd2c1fd2824f 1021 Gene3D G3DSA:2.20.25.90 64 157 7.6E-14 T 28-03-2018 AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 Pfam PF01026 TatD related DNase 6 257 8.9E-70 T 28-03-2018 IPR001130 TatD family GO:0016788 AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 SUPERFAMILY SSF51556 5 257 3.81E-81 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 Gene3D G3DSA:3.20.20.140 3 258 7.4E-77 T 28-03-2018 AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 PIRSF PIRSF005902 1 258 2.1E-76 T 28-03-2018 IPR001130 TatD family GO:0016788 AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 5 13 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS01810 315075e8afeeba9dc2b47a54d0938359 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 193 209 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS06885 1a05418b5973a7b8228c864482b0b676 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 4 191 5.8E-30 T 28-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM348_RS06885 1a05418b5973a7b8228c864482b0b676 197 Pfam PF01914 MarC family integral membrane protein 1 195 2.8E-63 T 28-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 Pfam PF01546 Peptidase family M20/M25/M40 76 377 2.8E-32 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 147 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 Pfam PF07687 Peptidase dimerisation domain 178 288 1.4E-25 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 Gene3D G3DSA:3.30.70.360 183 299 4.9E-21 T 28-03-2018 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 377 3.2E-170 T 28-03-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 Hamap MF_01108 Acetylornithine deacetylase [argE]. 3 382 67.706 T 28-03-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 SUPERFAMILY SSF55031 181 294 5.53E-21 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 SUPERFAMILY SSF53187 305 381 4.86E-59 T 28-03-2018 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 SUPERFAMILY SSF53187 3 180 4.86E-59 T 28-03-2018 AM348_RS04135 a77636f6da5b8b3baa9c3a5c9e649f48 383 Gene3D G3DSA:3.40.630.10 1 182 7.8E-29 T 28-03-2018 AM348_RS12880 6f080c69e20a7e10c0715ae266b1a8fb 165 Gene3D G3DSA:4.10.1230.10 108 162 1.2E-28 T 28-03-2018 IPR027438 Ecotin, C-terminal AM348_RS12880 6f080c69e20a7e10c0715ae266b1a8fb 165 Pfam PF03974 Ecotin 33 155 1.7E-52 T 28-03-2018 IPR023189 Proteinase inhibitor I11, ecotin domain AM348_RS12880 6f080c69e20a7e10c0715ae266b1a8fb 165 Gene3D G3DSA:2.60.40.550 30 102 1.1E-34 T 28-03-2018 AM348_RS12880 6f080c69e20a7e10c0715ae266b1a8fb 165 PIRSF PIRSF006865 1 165 1.2E-66 T 28-03-2018 IPR005658 Proteinase inhibitor I11, ecotin AM348_RS12880 6f080c69e20a7e10c0715ae266b1a8fb 165 SUPERFAMILY SSF49772 29 163 1.57E-56 T 28-03-2018 IPR023189 Proteinase inhibitor I11, ecotin domain AM348_RS12880 6f080c69e20a7e10c0715ae266b1a8fb 165 Hamap MF_00706 Ecotin [eco]. 1 165 41.056 T 28-03-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria AM348_RS11105 0e5d9ffdea2fd725dab89f66fc870032 124 Pfam PF10973 Protein of unknown function (DUF2799) 31 114 7.0E-21 T 28-03-2018 IPR021242 Protein of unknown function DUF2799 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 Gene3D G3DSA:3.40.190.10 129 223 1.4E-23 T 28-03-2018 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 Gene3D G3DSA:3.40.190.10 1 128 3.4E-36 T 28-03-2018 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 Gene3D G3DSA:3.30.70.120 227 298 3.3E-25 T 28-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 2.1E-48 T 28-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 SUPERFAMILY SSF53850 6 224 2.01E-70 T 28-03-2018 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 2.9E-58 T 28-03-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 36.137 T 28-03-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 Pfam PF08029 HisG, C-terminal domain 223 296 1.6E-24 T 28-03-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 SUPERFAMILY SSF54913 226 298 8.0E-22 T 28-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 28-03-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 AM348_RS13895 803f5b4b3cf8b47684037197957dc29f 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 200 298 2.2E-33 T 28-03-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 Gene3D G3DSA:3.40.50.720 1 278 6.4E-105 T 28-03-2018 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 SUPERFAMILY SSF48179 280 483 6.46E-65 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 213 459 8.1E-99 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 215 227 - T 28-03-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 23 185 6.2E-50 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 SUPERFAMILY SSF51735 4 278 8.66E-95 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 Gene3D G3DSA:1.10.1040.10 279 486 2.3E-69 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 PRINTS PR00084 Mannitol dehydrogenase signature 24 34 1.7E-21 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 PRINTS PR00084 Mannitol dehydrogenase signature 245 260 1.7E-21 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 PRINTS PR00084 Mannitol dehydrogenase signature 176 189 1.7E-21 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS17815 601567676332b1e7b5a88e98b8f9059a 488 PRINTS PR00084 Mannitol dehydrogenase signature 215 228 1.7E-21 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS02520 f0117a21e090636385011ca18b6df2f5 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 242 1.0E-123 T 28-03-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM348_RS02520 f0117a21e090636385011ca18b6df2f5 246 SUPERFAMILY SSF51569 51 205 1.25E-6 T 28-03-2018 AM348_RS02520 f0117a21e090636385011ca18b6df2f5 246 Pfam PF07071 KDGP aldolase 8 224 1.3E-111 T 28-03-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 AM348_RS02520 f0117a21e090636385011ca18b6df2f5 246 Gene3D G3DSA:3.20.20.70 4 245 4.2E-119 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS18100 875bddc3c889e9a91f431d1a156a4630 71 SUPERFAMILY SSF68989 1 71 2.48E-22 T 28-03-2018 IPR007985 Haemolysin expression modulating, HHA AM348_RS18100 875bddc3c889e9a91f431d1a156a4630 71 Gene3D G3DSA:1.20.1280.40 1 70 1.5E-28 T 28-03-2018 IPR007985 Haemolysin expression modulating, HHA AM348_RS18100 875bddc3c889e9a91f431d1a156a4630 71 Pfam PF05321 Haemolysin expression modulating protein 8 68 4.6E-28 T 28-03-2018 IPR007985 Haemolysin expression modulating, HHA AM348_RS03725 b6f34a6ff479869bbaaee92925ae407c 135 Pfam PF03610 PTS system fructose IIA component 7 113 2.8E-17 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS03725 b6f34a6ff479869bbaaee92925ae407c 135 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 1 114 3.8E-44 T 28-03-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 AM348_RS03725 b6f34a6ff479869bbaaee92925ae407c 135 Gene3D G3DSA:3.40.50.510 1 134 3.2E-27 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS03725 b6f34a6ff479869bbaaee92925ae407c 135 SUPERFAMILY SSF53062 1 125 1.83E-29 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS02980 7d6de5d3723fe56353c42741f08fbe7a 118 PIRSF PIRSF000179 1 118 2.9E-51 T 28-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM348_RS02980 7d6de5d3723fe56353c42741f08fbe7a 118 Gene3D G3DSA:1.20.1300.10 1 118 7.1E-31 T 28-03-2018 AM348_RS02980 7d6de5d3723fe56353c42741f08fbe7a 118 SUPERFAMILY SSF81343 1 118 2.62E-51 T 28-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS02980 7d6de5d3723fe56353c42741f08fbe7a 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 1 118 8.0E-61 T 28-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM348_RS02980 7d6de5d3723fe56353c42741f08fbe7a 118 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 2 118 27.189 T 28-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM348_RS02980 7d6de5d3723fe56353c42741f08fbe7a 118 Pfam PF02313 Fumarate reductase subunit D 6 115 5.4E-50 T 28-03-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 30 417 2.5E-145 T 28-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 Gene3D G3DSA:1.20.1250.20 16 230 3.1E-25 T 28-03-2018 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 Gene3D G3DSA:1.20.1250.20 231 428 3.3E-19 T 28-03-2018 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 Pfam PF00083 Sugar (and other) transporter 231 428 5.3E-11 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 Pfam PF00083 Sugar (and other) transporter 24 221 1.4E-26 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS11175 adf3acf4c9051a05bcf20e77368b8d46 432 SUPERFAMILY SSF103473 18 430 1.44E-64 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS22390 9a24bfccb3d2f1b641045275552aa9ad 72 Gene3D G3DSA:3.90.820.10 4 63 6.5E-23 T 28-03-2018 AM348_RS22390 9a24bfccb3d2f1b641045275552aa9ad 72 Pfam PF03621 MbtH-like protein 4 54 2.6E-20 T 28-03-2018 IPR005153 MbtH-like protein AM348_RS22390 9a24bfccb3d2f1b641045275552aa9ad 72 SUPERFAMILY SSF160582 3 68 1.31E-22 T 28-03-2018 AM348_RS22390 9a24bfccb3d2f1b641045275552aa9ad 72 SMART SM00923 5 55 5.4E-22 T 28-03-2018 IPR005153 MbtH-like protein AM348_RS05820 7fdf3b4d7dc99bec6aa2f51089f976fe 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 7.2E-44 T 28-03-2018 IPR013527 YicC-like, N-terminal AM348_RS05820 7fdf3b4d7dc99bec6aa2f51089f976fe 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.9E-138 T 28-03-2018 IPR005229 Conserved hypothetical protein CHP00255 AM348_RS05820 7fdf3b4d7dc99bec6aa2f51089f976fe 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.6E-34 T 28-03-2018 IPR013551 Domain of unknown function DUF1732 AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-66 T 28-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 PIRSF PIRSF006246 1 125 1.0E-51 T 28-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 71.332 T 28-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 7.1E-68 T 28-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 Gene3D G3DSA:2.40.40.20 1 117 2.9E-52 T 28-03-2018 AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 SUPERFAMILY SSF50692 1 121 1.74E-47 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS00975 f143cad564dd47211293b3b2d157b134 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.0E-47 T 28-03-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 AM348_RS15405 9f24daab0275e661eebbf5a5d452959b 192 Pfam PF00293 NUDIX domain 30 144 4.3E-14 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS15405 9f24daab0275e661eebbf5a5d452959b 192 Gene3D G3DSA:3.90.79.10 7 189 1.6E-40 T 28-03-2018 AM348_RS15405 9f24daab0275e661eebbf5a5d452959b 192 SUPERFAMILY SSF55811 8 181 1.34E-34 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS15405 9f24daab0275e661eebbf5a5d452959b 192 ProSitePatterns PS01293 Nudix CoA signature. 47 67 - T 28-03-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918 AM348_RS19465 782a5b24d43e8f4863c6b45b32a7533b 399 Pfam PF12704 MacB-like periplasmic core domain 27 208 8.8E-14 T 28-03-2018 IPR025857 MacB-like periplasmic core domain AM348_RS19465 782a5b24d43e8f4863c6b45b32a7533b 399 Pfam PF02687 FtsX-like permease family 296 392 1.1E-12 T 28-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM348_RS19465 782a5b24d43e8f4863c6b45b32a7533b 399 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 399 4.3E-146 T 28-03-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AM348_RS19465 782a5b24d43e8f4863c6b45b32a7533b 399 Gene3D G3DSA:1.10.3720.10 4 382 1.4E-5 T 28-03-2018 AM348_RS07895 ee1a4129f015933ae8870c565c44fe9b 309 SMART SM00729 23 247 1.0E-40 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS07895 ee1a4129f015933ae8870c565c44fe9b 309 Gene3D G3DSA:3.20.20.70 13 296 3.8E-34 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07895 ee1a4129f015933ae8870c565c44fe9b 309 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 301 4.6E-140 T 28-03-2018 IPR005911 Protein YhcC-like GO:0051536 AM348_RS07895 ee1a4129f015933ae8870c565c44fe9b 309 Pfam PF16199 Radical_SAM C-terminal domain 208 287 5.0E-17 T 28-03-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 AM348_RS07895 ee1a4129f015933ae8870c565c44fe9b 309 SUPERFAMILY SSF102114 13 254 1.7E-44 T 28-03-2018 AM348_RS07895 ee1a4129f015933ae8870c565c44fe9b 309 Pfam PF04055 Radical SAM superfamily 43 202 1.4E-15 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS15050 0933283015efb497c4a28631986e5747 383 Gene3D G3DSA:3.40.1690.10 218 353 6.6E-59 T 28-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AM348_RS15050 0933283015efb497c4a28631986e5747 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.4E-43 T 28-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM348_RS15050 0933283015efb497c4a28631986e5747 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.4E-43 T 28-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM348_RS15050 0933283015efb497c4a28631986e5747 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.4E-43 T 28-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM348_RS15050 0933283015efb497c4a28631986e5747 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.4E-43 T 28-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM348_RS15050 0933283015efb497c4a28631986e5747 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.4E-43 T 28-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM348_RS15050 0933283015efb497c4a28631986e5747 383 SUPERFAMILY SSF160544 244 351 1.24E-41 T 28-03-2018 IPR029025 Type III secretion system substrate exporter, C-terminal AM348_RS15050 0933283015efb497c4a28631986e5747 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 4.5E-125 T 28-03-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 AM348_RS15050 0933283015efb497c4a28631986e5747 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 354 1.0E-140 T 28-03-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 AM348_RS15515 4c35ce6fca8d13ce5b7b92ae1a38c676 176 SUPERFAMILY SSF158442 15 160 1.83E-45 T 28-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM348_RS15515 4c35ce6fca8d13ce5b7b92ae1a38c676 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.542 T 28-03-2018 IPR022920 Disulphide bond formation protein DsbB AM348_RS15515 4c35ce6fca8d13ce5b7b92ae1a38c676 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 8.2E-46 T 28-03-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 AM348_RS15515 4c35ce6fca8d13ce5b7b92ae1a38c676 176 Gene3D G3DSA:1.20.1550.10 1 176 2.9E-55 T 28-03-2018 IPR023380 Disulphide bond formation protein DsbB-like domain AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 7.4E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 Pfam PF00072 Response regulator receiver domain 4 112 9.0E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 SMART SM00862 147 223 1.7E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 Gene3D G3DSA:1.10.10.10 121 225 1.3E-29 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 SMART SM00448 2 112 1.1E-39 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 SUPERFAMILY SSF52172 3 177 2.99E-39 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS21865 357a64288bb1fb0999f0f728db22f4ea 225 Gene3D G3DSA:3.40.50.2300 1 120 7.8E-36 T 28-03-2018 AM348_RS18135 3cd585e7cc6a74cc4dfa7d201a41b00e 230 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 1.2E-61 T 28-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM348_RS18135 3cd585e7cc6a74cc4dfa7d201a41b00e 230 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 7 209 3.9E-81 T 28-03-2018 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 AM348_RS18135 3cd585e7cc6a74cc4dfa7d201a41b00e 230 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 210 27.513 T 28-03-2018 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 AM348_RS18135 3cd585e7cc6a74cc4dfa7d201a41b00e 230 PIRSF PIRSF006102 1 219 4.0E-79 T 28-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 Gene3D G3DSA:3.40.190.10 90 171 1.5E-16 T 28-03-2018 AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 Pfam PF03466 LysR substrate binding domain 86 290 2.1E-42 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 SUPERFAMILY SSF46785 1 84 4.44E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 SUPERFAMILY SSF53850 87 292 1.36E-39 T 28-03-2018 AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 Gene3D G3DSA:1.10.10.10 1 89 9.2E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.7E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS11230 1e0f02eb1490c9b47f69f669b09e2f0a 298 Gene3D G3DSA:3.40.190.10 172 262 3.7E-14 T 28-03-2018 AM348_RS05245 8bbefb14f21e4b207639294d454fe7e5 207 SUPERFAMILY SSF53335 4 205 1.67E-43 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS05245 8bbefb14f21e4b207639294d454fe7e5 207 PIRSF PIRSF003078 1 206 8.5E-68 T 28-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM348_RS05245 8bbefb14f21e4b207639294d454fe7e5 207 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 201 28.857 T 28-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM348_RS05245 8bbefb14f21e4b207639294d454fe7e5 207 Pfam PF02527 rRNA small subunit methyltransferase G 20 200 4.0E-67 T 28-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM348_RS05245 8bbefb14f21e4b207639294d454fe7e5 207 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 203 8.3E-62 T 28-03-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 AM348_RS05245 8bbefb14f21e4b207639294d454fe7e5 207 Gene3D G3DSA:3.40.50.150 1 207 5.3E-39 T 28-03-2018 AM348_RS14325 9534fadfa659d71350da919593e74ac0 519 SMART SM00052 264 508 7.7E-63 T 28-03-2018 IPR001633 EAL domain AM348_RS14325 9534fadfa659d71350da919593e74ac0 519 Pfam PF12792 CSS motif domain associated with EAL 38 228 2.7E-18 T 28-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM348_RS14325 9534fadfa659d71350da919593e74ac0 519 Gene3D G3DSA:3.20.20.450 257 518 1.6E-72 T 28-03-2018 IPR001633 EAL domain AM348_RS14325 9534fadfa659d71350da919593e74ac0 519 SUPERFAMILY SSF141868 270 515 7.72E-67 T 28-03-2018 IPR001633 EAL domain AM348_RS14325 9534fadfa659d71350da919593e74ac0 519 Pfam PF00563 EAL domain 271 503 2.7E-56 T 28-03-2018 IPR001633 EAL domain AM348_RS17850 e6e34b4634dd3ed8fff16dc93e803493 102 Pfam PF06649 Protein of unknown function (DUF1161) 27 80 5.7E-22 T 28-03-2018 IPR010595 Protein of unknown function DUF1161 AM348_RS17850 e6e34b4634dd3ed8fff16dc93e803493 102 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 2 80 2.0E-31 T 28-03-2018 IPR010595 Protein of unknown function DUF1161 AM348_RS03750 e41abb732e85fbc77eb236fc670985ca 270 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 118 164 1.3E-5 T 28-03-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase AM348_RS03750 e41abb732e85fbc77eb236fc670985ca 270 SUPERFAMILY SSF53223 3 102 9.78E-28 T 28-03-2018 AM348_RS03750 e41abb732e85fbc77eb236fc670985ca 270 Gene3D G3DSA:3.40.50.720 114 269 1.0E-29 T 28-03-2018 AM348_RS03750 e41abb732e85fbc77eb236fc670985ca 270 Gene3D G3DSA:3.40.50.10860 12 113 9.9E-29 T 28-03-2018 AM348_RS03750 e41abb732e85fbc77eb236fc670985ca 270 SUPERFAMILY SSF51735 103 263 6.85E-36 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03750 e41abb732e85fbc77eb236fc670985ca 270 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 23 90 1.9E-17 T 28-03-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 AM348_RS06505 3d2f9555bc7951cb7eaa2dde210f7258 429 PIRSF PIRSF002808 2 427 2.8E-40 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS06505 3d2f9555bc7951cb7eaa2dde210f7258 429 SUPERFAMILY SSF103473 4 415 1.22E-87 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06505 3d2f9555bc7951cb7eaa2dde210f7258 429 Pfam PF07690 Major Facilitator Superfamily 14 378 8.9E-61 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06505 3d2f9555bc7951cb7eaa2dde210f7258 429 Gene3D G3DSA:1.20.1250.20 219 427 5.8E-30 T 28-03-2018 AM348_RS06505 3d2f9555bc7951cb7eaa2dde210f7258 429 Gene3D G3DSA:1.20.1250.20 2 202 2.7E-44 T 28-03-2018 AM348_RS02365 061c2eafbdc48fb9d7949ea1b7acb10c 360 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 6 358 3.0E-137 T 28-03-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 AM348_RS02365 061c2eafbdc48fb9d7949ea1b7acb10c 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 358 2.6E-74 T 28-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 28-03-2018 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 Pfam PF00814 Glycoprotease family 24 307 1.5E-103 T 28-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 SUPERFAMILY SSF53067 1 309 2.59E-45 T 28-03-2018 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 3.4E-137 T 28-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 Gene3D G3DSA:3.30.420.40 145 288 6.3E-19 T 28-03-2018 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.3E-52 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.3E-52 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.3E-52 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.3E-52 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.3E-52 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.3E-52 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 3.0E-130 T 28-03-2018 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.657 T 28-03-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS08630 ad7a04ec470d130b3a7e5b1057a36088 337 Gene3D G3DSA:3.30.420.40 1 144 1.0E-42 T 28-03-2018 AM348_RS14345 b428a48493653f5afe46eeefdf66e4c0 155 SUPERFAMILY SSF52980 2 153 7.51E-49 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS14345 b428a48493653f5afe46eeefdf66e4c0 155 PIRSF PIRSF018267 1 145 4.2E-49 T 28-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM348_RS14345 b428a48493653f5afe46eeefdf66e4c0 155 Pfam PF03852 DNA mismatch endonuclease Vsr 2 74 6.0E-35 T 28-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM348_RS14345 b428a48493653f5afe46eeefdf66e4c0 155 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 2 118 5.9E-49 T 28-03-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 AM348_RS14345 b428a48493653f5afe46eeefdf66e4c0 155 Gene3D G3DSA:3.40.960.10 21 155 8.1E-30 T 28-03-2018 AM348_RS19060 4d82ec2a13c93337fa26c984dc04ec00 511 SUPERFAMILY SSF161098 7 253 4.91E-18 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19060 4d82ec2a13c93337fa26c984dc04ec00 511 Gene3D G3DSA:1.10.3720.10 285 510 9.8E-14 T 28-03-2018 AM348_RS19060 4d82ec2a13c93337fa26c984dc04ec00 511 SUPERFAMILY SSF161098 296 498 3.14E-18 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19060 4d82ec2a13c93337fa26c984dc04ec00 511 Gene3D G3DSA:1.10.3720.10 2 267 1.1E-16 T 28-03-2018 AM348_RS13825 f95a097d4f581594423f36e1f87ec393 262 Gene3D G3DSA:3.90.550.10 1 262 1.4E-21 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13825 f95a097d4f581594423f36e1f87ec393 262 SUPERFAMILY SSF53448 2 255 1.13E-24 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS09205 a582b7b8561553dccdd4fc886cf4b89c 239 Pfam PF11101 Protein of unknown function (DUF2884) 24 237 3.8E-39 T 28-03-2018 IPR021307 Protein of unknown function DUF2884 AM348_RS18540 c0de6b8e8e296f5cea4bad042220e3c5 261 Gene3D G3DSA:1.10.3720.10 4 238 3.7E-28 T 28-03-2018 AM348_RS18540 c0de6b8e8e296f5cea4bad042220e3c5 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 236 1.7E-10 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS18540 c0de6b8e8e296f5cea4bad042220e3c5 261 SUPERFAMILY SSF161098 17 224 2.09E-29 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS18540 c0de6b8e8e296f5cea4bad042220e3c5 261 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 80 1.9E-14 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS13045 356d0e4afb160d52a2184a85ff334215 189 Gene3D G3DSA:3.90.1720.10 64 189 1.4E-39 T 28-03-2018 AM348_RS13045 356d0e4afb160d52a2184a85ff334215 189 Pfam PF00877 NlpC/P60 family 80 184 1.9E-33 T 28-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM348_RS13045 356d0e4afb160d52a2184a85ff334215 189 SUPERFAMILY SSF54001 68 186 4.12E-40 T 28-03-2018 AM348_RS07635 b89eeed510587ff23e87856ec9edd8fe 54 Pfam PF10831 Protein of unknown function (DUF2556) 1 53 1.4E-36 T 28-03-2018 IPR022540 Protein of unknown function DUF2556 AM348_RS07635 b89eeed510587ff23e87856ec9edd8fe 54 ProDom PD052549 YHDU TRANSMEMBRANE MEMBRANE PERIPLASMIC 1 54 3.0E-13 T 28-03-2018 IPR022540 Protein of unknown function DUF2556 AM348_RS17660 c9f1c7bf2ee86bd3d68ffbabae7dd199 173 SUPERFAMILY SSF55729 1 171 5.42E-39 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS17660 c9f1c7bf2ee86bd3d68ffbabae7dd199 173 Pfam PF13302 Acetyltransferase (GNAT) domain 6 147 5.8E-29 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS17660 c9f1c7bf2ee86bd3d68ffbabae7dd199 173 Gene3D G3DSA:3.40.630.30 1 173 2.3E-25 T 28-03-2018 AM348_RS04530 90a6bf02f5d3a7bda825903060ca2eb6 95 Pfam PF01381 Helix-turn-helix 37 74 1.2E-8 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS04530 90a6bf02f5d3a7bda825903060ca2eb6 95 Gene3D G3DSA:1.10.260.40 35 95 4.3E-14 T 28-03-2018 AM348_RS04530 90a6bf02f5d3a7bda825903060ca2eb6 95 SMART SM00530 36 90 3.1E-7 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS04530 90a6bf02f5d3a7bda825903060ca2eb6 95 SUPERFAMILY SSF47413 36 85 1.9E-11 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS14290 3a2c4c277b94c5e628d49f7af817615a 346 Gene3D G3DSA:3.30.50.20 273 332 1.1E-14 T 28-03-2018 AM348_RS14290 3a2c4c277b94c5e628d49f7af817615a 346 SMART SM00507 263 312 0.0059 T 28-03-2018 IPR003615 HNH nuclease AM348_RS14290 3a2c4c277b94c5e628d49f7af817615a 346 Pfam PF06147 Protein of unknown function (DUF968) 132 343 2.3E-68 T 28-03-2018 IPR010373 Protein of unknown function DUF968 AM348_RS09355 3380f04bebb08fbb13e3a548492e4525 298 Pfam PF03466 LysR substrate binding domain 91 283 1.1E-10 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS09355 3380f04bebb08fbb13e3a548492e4525 298 Gene3D G3DSA:1.10.10.10 5 86 3.3E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09355 3380f04bebb08fbb13e3a548492e4525 298 Gene3D G3DSA:3.40.190.10 88 269 3.6E-6 T 28-03-2018 AM348_RS09355 3380f04bebb08fbb13e3a548492e4525 298 SUPERFAMILY SSF46785 8 88 7.62E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09355 3380f04bebb08fbb13e3a548492e4525 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 9.5E-12 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09355 3380f04bebb08fbb13e3a548492e4525 298 SUPERFAMILY SSF53850 104 283 3.55E-13 T 28-03-2018 AM348_RS23515 80f09fe8af83630f9e278e0aeba39b01 371 SUPERFAMILY SSF55073 215 367 7.38E-44 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS23515 80f09fe8af83630f9e278e0aeba39b01 371 Gene3D G3DSA:3.30.70.270 200 371 1.8E-49 T 28-03-2018 AM348_RS23515 80f09fe8af83630f9e278e0aeba39b01 371 SMART SM00267 199 370 3.6E-62 T 28-03-2018 IPR000160 GGDEF domain AM348_RS23515 80f09fe8af83630f9e278e0aeba39b01 371 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 206 370 4.5E-63 T 28-03-2018 IPR000160 GGDEF domain AM348_RS23515 80f09fe8af83630f9e278e0aeba39b01 371 Pfam PF05230 MASE2 domain 40 128 1.9E-27 T 28-03-2018 IPR007894 MASE2 AM348_RS23515 80f09fe8af83630f9e278e0aeba39b01 371 Pfam PF00990 Diguanylate cyclase, GGDEF domain 211 366 1.4E-46 T 28-03-2018 IPR000160 GGDEF domain AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 SMART SM00487 23 223 1.3E-59 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 28-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 49.716 T 28-03-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 Pfam PF00270 DEAD/DEAH box helicase 28 198 3.9E-47 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 SUPERFAMILY SSF52540 76 358 6.38E-68 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 SMART SM00490 262 343 4.9E-31 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 Gene3D G3DSA:3.40.50.300 226 442 8.8E-47 T 28-03-2018 AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 Gene3D G3DSA:3.40.50.300 1 225 2.9E-59 T 28-03-2018 AM348_RS11235 5461d26ddb53a4ae9e4240a49d1a5c28 442 Pfam PF00271 Helicase conserved C-terminal domain 235 343 5.2E-30 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS21080 94754d825197383e8c1c416612fdd122 262 Pfam PF13427 Domain of unknown function (DUF4111) 153 255 7.6E-26 T 28-03-2018 IPR025184 Domain of unknown function DUF4111 AM348_RS21080 94754d825197383e8c1c416612fdd122 262 SUPERFAMILY SSF81301 11 102 1.18E-10 T 28-03-2018 AM348_RS21080 94754d825197383e8c1c416612fdd122 262 Gene3D G3DSA:3.30.460.10 2 180 1.2E-10 T 28-03-2018 AM348_RS21080 94754d825197383e8c1c416612fdd122 262 Pfam PF01909 Nucleotidyltransferase domain 29 97 2.1E-6 T 28-03-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 AM348_RS21080 94754d825197383e8c1c416612fdd122 262 PIRSF PIRSF000819 9 260 8.5E-59 T 28-03-2018 IPR024172 Streptomycin 3''-adenylyltransferase GO:0009012|GO:0046677 AM348_RS10365 c34ec436a5cb015c92bc88623eb2cfa8 608 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 154 178 1.7E-7 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10365 c34ec436a5cb015c92bc88623eb2cfa8 608 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 373 399 1.7E-7 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10365 c34ec436a5cb015c92bc88623eb2cfa8 608 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 321 340 1.7E-7 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10365 c34ec436a5cb015c92bc88623eb2cfa8 608 Pfam PF00361 Proton-conducting membrane transporter 124 402 8.1E-38 T 28-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12545 90324bab6facc6b32a41ad4d61be9aa8 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 1.6E-58 T 28-03-2018 IPR007334 Uncharacterised protein family UPF0208 AM348_RS12545 90324bab6facc6b32a41ad4d61be9aa8 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 36.906 T 28-03-2018 IPR007334 Uncharacterised protein family UPF0208 AM348_RS18580 f67e5d244b8e05b96660e014d799a3a7 69 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 67 3.0E-29 T 28-03-2018 AM348_RS18580 f67e5d244b8e05b96660e014d799a3a7 69 Pfam PF10965 Protein of unknown function (DUF2767) 1 67 2.6E-32 T 28-03-2018 IPR024493 Fumarase D AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 Gene3D G3DSA:3.40.50.2300 174 304 4.6E-23 T 28-03-2018 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.2E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.2E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 Pfam PF13377 Periplasmic binding protein-like domain 168 313 3.3E-19 T 28-03-2018 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 4.4E-21 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 314 1.4E-170 T 28-03-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 Gene3D G3DSA:1.10.260.40 5 56 1.7E-21 T 28-03-2018 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 Gene3D G3DSA:3.40.50.2300 57 173 9.0E-19 T 28-03-2018 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 SUPERFAMILY SSF53822 63 314 1.16E-60 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 SUPERFAMILY SSF47413 3 60 1.33E-16 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 28-03-2018 AM348_RS02490 cbef2ce5c803b4073c9bc8885c83db2a 315 SMART SM00354 4 74 3.5E-33 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 SUPERFAMILY SSF101801 54 135 4.32E-27 T 28-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 53 128 8.6E-34 T 28-03-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 117 1.8E-30 T 28-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 56 72 1.8E-30 T 28-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 73 89 1.8E-30 T 28-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 89 102 1.8E-30 T 28-03-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 49 6.5E-20 T 28-03-2018 IPR031576 Flagellar motor switch protein FliN, N-terminal AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 Gene3D G3DSA:2.30.330.10 44 137 8.9E-31 T 28-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM348_RS14400 08b6df09487bcd6951b8cf549c48cc90 137 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 56 126 3.5E-26 T 28-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 SUPERFAMILY SSF89360 1 97 6.67E-21 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 1.0E-27 T 28-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.233 T 28-03-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 99 4.5E-13 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 Gene3D G3DSA:2.60.300.12 1 101 2.7E-16 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 Gene3D G3DSA:3.30.300.130 102 187 1.6E-25 T 28-03-2018 IPR034904 Fe-S cluster assembly domain AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 5.5E-100 T 28-03-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 Pfam PF01106 NifU-like domain 111 177 2.9E-20 T 28-03-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 AM348_RS06960 62ab5b19bfd36d189bd136e317704027 191 SUPERFAMILY SSF117916 95 184 7.63E-25 T 28-03-2018 IPR034904 Fe-S cluster assembly domain AM348_RS01595 315093fde52356b0718c1401cb664dc9 456 SUPERFAMILY SSF103473 39 442 1.09E-30 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS01595 315093fde52356b0718c1401cb664dc9 456 Gene3D G3DSA:1.20.1250.20 236 454 5.0E-12 T 28-03-2018 AM348_RS01595 315093fde52356b0718c1401cb664dc9 456 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 21 453 4.4E-109 T 28-03-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 AM348_RS01595 315093fde52356b0718c1401cb664dc9 456 Pfam PF13347 MFS/sugar transport protein 23 439 4.7E-80 T 28-03-2018 AM348_RS01595 315093fde52356b0718c1401cb664dc9 456 Gene3D G3DSA:1.20.1250.20 23 226 1.2E-12 T 28-03-2018 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 SUPERFAMILY SSF54862 23 99 4.0E-6 T 28-03-2018 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 PIRSF PIRSF000371 15 83 1.5E-26 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 PIRSF PIRSF000371 64 292 7.8E-69 T 28-03-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 ProSitePatterns PS01087 Radical activating enzymes signature. 35 56 - T 28-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 SUPERFAMILY SSF102114 74 259 5.3E-13 T 28-03-2018 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 Gene3D G3DSA:3.20.20.70 11 286 5.2E-28 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 Pfam PF13353 4Fe-4S single cluster domain 34 146 4.2E-11 T 28-03-2018 AM348_RS04160 e7e920792823c3afa55e37da92515410 292 Pfam PF04055 Radical SAM superfamily 41 222 1.0E-22 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS16585 190cfac963a4c3c79c4f8bc7843925cf 547 PIRSF PIRSF002741 1 543 7.4E-93 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS16585 190cfac963a4c3c79c4f8bc7843925cf 547 Gene3D G3DSA:3.90.76.10 45 209 8.1E-35 T 28-03-2018 AM348_RS16585 190cfac963a4c3c79c4f8bc7843925cf 547 Gene3D G3DSA:3.40.190.10 210 304 4.2E-22 T 28-03-2018 AM348_RS16585 190cfac963a4c3c79c4f8bc7843925cf 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 79 458 7.9E-83 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS16585 190cfac963a4c3c79c4f8bc7843925cf 547 Gene3D G3DSA:3.10.105.10 305 510 4.5E-53 T 28-03-2018 AM348_RS16585 190cfac963a4c3c79c4f8bc7843925cf 547 SUPERFAMILY SSF53850 36 537 1.09E-132 T 28-03-2018 AM348_RS00980 e4483aeebcb7895943292290046abe2f 409 Pfam PF01522 Polysaccharide deacetylase 228 366 1.5E-17 T 28-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AM348_RS00980 e4483aeebcb7895943292290046abe2f 409 Gene3D G3DSA:3.20.20.370 171 406 4.0E-34 T 28-03-2018 AM348_RS00980 e4483aeebcb7895943292290046abe2f 409 SUPERFAMILY SSF88713 191 379 3.34E-27 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS09395 28966b356de7850464af1a98107e290f 198 Gene3D G3DSA:3.40.50.10420 4 198 3.1E-59 T 28-03-2018 AM348_RS09395 28966b356de7850464af1a98107e290f 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 12 192 4.3E-45 T 28-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AM348_RS09395 28966b356de7850464af1a98107e290f 198 SUPERFAMILY SSF100950 10 198 2.51E-56 T 28-03-2018 AM348_RS09395 28966b356de7850464af1a98107e290f 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 2.5E-53 T 28-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AM348_RS09395 28966b356de7850464af1a98107e290f 198 PIRSF PIRSF006806 8 195 1.2E-35 T 28-03-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase AM348_RS22395 e3b9c3c9f172e3adb14aaff2b806f7da 405 Pfam PF11806 Domain of unknown function (DUF3327) 31 161 1.9E-42 T 28-03-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 AM348_RS22395 e3b9c3c9f172e3adb14aaff2b806f7da 405 Gene3D G3DSA:2.60.40.10 6 148 6.4E-44 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS22395 e3b9c3c9f172e3adb14aaff2b806f7da 405 SUPERFAMILY SSF81296 7 156 1.82E-47 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS22395 e3b9c3c9f172e3adb14aaff2b806f7da 405 Pfam PF00756 Putative esterase 178 396 2.7E-41 T 28-03-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 AM348_RS22395 e3b9c3c9f172e3adb14aaff2b806f7da 405 Gene3D G3DSA:3.40.50.1820 151 405 1.3E-36 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22395 e3b9c3c9f172e3adb14aaff2b806f7da 405 SUPERFAMILY SSF53474 163 399 7.44E-47 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS05900 7484da398e373d8b3812ee694c2ece53 266 SUPERFAMILY SSF56112 71 195 2.28E-5 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS05900 7484da398e373d8b3812ee694c2ece53 266 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 21 231 1.4E-61 T 28-03-2018 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 AM348_RS05900 7484da398e373d8b3812ee694c2ece53 266 PIRSF PIRSF037318 1 266 7.0E-141 T 28-03-2018 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP GO:0009103|GO:0016301 AM348_RS01685 22533fdd27155770b06308b7ecece572 228 PIRSF PIRSF004808 1 228 1.1E-61 T 28-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS01685 22533fdd27155770b06308b7ecece572 228 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 2 226 3.5E-75 T 28-03-2018 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 AM348_RS01685 22533fdd27155770b06308b7ecece572 228 Gene3D G3DSA:3.40.1280.10 2 161 2.2E-33 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS01685 22533fdd27155770b06308b7ecece572 228 SUPERFAMILY SSF75217 2 156 1.05E-30 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS01685 22533fdd27155770b06308b7ecece572 228 Pfam PF00588 SpoU rRNA Methylase family 3 153 5.9E-33 T 28-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 SUPERFAMILY SSF46785 3 86 5.31E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 Gene3D G3DSA:1.10.10.10 1 86 1.2E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.6E-20 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 SUPERFAMILY SSF53850 93 271 3.26E-12 T 28-03-2018 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.0E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.0E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.0E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 5 279 49.42 T 28-03-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 Pfam PF03466 LysR substrate binding domain 92 270 4.1E-10 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS05135 e963a54b0610e6a81ee82710f746efa4 281 Gene3D G3DSA:3.40.190.10 87 255 2.0E-9 T 28-03-2018 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 PIRSF PIRSF000243 21 478 4.4E-127 T 28-03-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 Gene3D G3DSA:1.10.468.10 215 304 4.9E-25 T 28-03-2018 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 Gene3D G3DSA:3.90.10.10 25 214 7.9E-8 T 28-03-2018 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 Hamap MF_01182 Cytochrome c-552 [nrfA]. 1 477 59.114 T 28-03-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 38 475 8.2E-253 T 28-03-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 Gene3D G3DSA:1.20.140.10 305 444 4.1E-44 T 28-03-2018 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 Pfam PF02335 Cytochrome c552 43 472 1.1E-177 T 28-03-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 AM348_RS03415 f0d233ded266e0a30377e422e85aed28 478 SUPERFAMILY SSF48695 38 472 2.15E-164 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 Gene3D G3DSA:1.10.10.10 1 70 4.9E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 Pfam PF00455 DeoR C terminal sensor domain 85 236 1.4E-28 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 Pfam PF08220 DeoR-like helix-turn-helix domain 8 51 4.8E-9 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 SMART SM00420 8 59 5.2E-4 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 SMART SM01134 76 237 4.2E-36 T 28-03-2018 AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 Gene3D G3DSA:3.40.50.1360 84 241 1.9E-15 T 28-03-2018 AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 SUPERFAMILY SSF100950 85 237 1.15E-11 T 28-03-2018 AM348_RS05525 d4fd0f5e6b009ea086aad42cbd35850d 261 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS21030 381e4c6e1d9574f6019d527780afe459 127 ProDom PD079626 YLIH RECEPTOR STY0893 CYTOPLASMIC 1 107 1.0E-39 T 28-03-2018 IPR020359 Biofilm regulator BssR AM348_RS21030 381e4c6e1d9574f6019d527780afe459 127 Pfam PF10799 Biofilm formation protein (YliH/bssR) 1 126 2.3E-68 T 28-03-2018 IPR020359 Biofilm regulator BssR AM348_RS08085 811bca9225ca9203453351138400d4fe 377 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 2 377 5.5E-109 T 28-03-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 Gene3D G3DSA:3.20.20.140 69 318 3.0E-105 T 28-03-2018 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 PIRSF PIRSF001238 1 377 1.8E-132 T 28-03-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 SUPERFAMILY SSF51338 1 54 2.21E-17 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 SUPERFAMILY SSF51338 335 375 2.21E-17 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 SUPERFAMILY SSF51556 55 333 8.35E-71 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS08085 811bca9225ca9203453351138400d4fe 377 Gene3D G3DSA:2.30.40.10 2 68 9.4E-16 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 Pfam PF01979 Amidohydrolase family 51 361 6.1E-15 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS08085 811bca9225ca9203453351138400d4fe 377 Gene3D G3DSA:2.30.40.10 319 367 0.0011 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 Gene3D G3DSA:3.90.1150.10 284 401 3.7E-38 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 Hamap MF_01831 Cysteine desulfurase [sufS]. 1 406 74.844 T 28-03-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 7 405 3.4E-185 T 28-03-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 217 236 - T 28-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 Pfam PF00266 Aminotransferase class-V 26 394 6.3E-154 T 28-03-2018 IPR000192 Aminotransferase class V domain AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 Gene3D G3DSA:3.40.640.10 34 283 1.0E-57 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS18650 44ba7b50dc284dc27ffefcfec50c4e3a 406 SUPERFAMILY SSF53383 4 401 1.65E-125 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS05885 5a4d5dbb2f14cc393238b446a6256eed 425 Gene3D G3DSA:3.40.50.2000 50 218 7.7E-4 T 28-03-2018 AM348_RS05885 5a4d5dbb2f14cc393238b446a6256eed 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 211 3.6E-66 T 28-03-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 AM348_RS05885 5a4d5dbb2f14cc393238b446a6256eed 425 SUPERFAMILY SSF53756 57 420 8.37E-20 T 28-03-2018 AM348_RS05885 5a4d5dbb2f14cc393238b446a6256eed 425 Pfam PF00534 Glycosyl transferases group 1 235 398 1.5E-12 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS05885 5a4d5dbb2f14cc393238b446a6256eed 425 Gene3D G3DSA:3.40.50.2000 219 402 2.0E-14 T 28-03-2018 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 SMART SM01209 103 296 4.1E-143 T 28-03-2018 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Gene3D G3DSA:3.90.600.10 330 425 6.2E-33 T 28-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 28-03-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 SUPERFAMILY SSF56059 104 325 2.65E-69 T 28-03-2018 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 SUPERFAMILY SSF51246 329 424 1.65E-31 T 28-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 1.1E-35 T 28-03-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 SUPERFAMILY SSF52440 1 103 1.73E-37 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Gene3D G3DSA:3.30.1490.20 135 189 5.9E-23 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Gene3D G3DSA:3.40.50.20 2 95 2.5E-37 T 28-03-2018 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 425 3.2E-187 T 28-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 SMART SM01210 330 424 8.0E-52 T 28-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 422 8.3E-28 T 28-03-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 44.334 T 28-03-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 6.3E-84 T 28-03-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS03870 489e21088315485a9e0dac97d2ff22a3 429 Gene3D G3DSA:3.30.470.20 191 329 1.0E-62 T 28-03-2018 AM348_RS16510 3ef916049b70bf7973500c1ba5e99837 108 SUPERFAMILY SSF55159 5 104 7.46E-26 T 28-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 AM348_RS16510 3ef916049b70bf7973500c1ba5e99837 108 Gene3D G3DSA:3.30.780.10 16 106 8.2E-21 T 28-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 AM348_RS16510 3ef916049b70bf7973500c1ba5e99837 108 Pfam PF01253 Translation initiation factor SUI1 32 101 9.5E-19 T 28-03-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 AM348_RS16510 3ef916049b70bf7973500c1ba5e99837 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 2.1E-39 T 28-03-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 AM348_RS16510 3ef916049b70bf7973500c1ba5e99837 108 PIRSF PIRSF037511 1 108 3.2E-36 T 28-03-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 6.4E-132 T 28-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 Pfam PF01380 SIS domain 46 177 3.2E-34 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 Gene3D G3DSA:3.10.580.10 205 326 3.6E-18 T 28-03-2018 AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 Gene3D G3DSA:3.40.50.10490 11 204 9.9E-56 T 28-03-2018 AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 Pfam PF00571 CBS domain 206 261 5.1E-5 T 28-03-2018 IPR000644 CBS domain AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 Pfam PF00571 CBS domain 274 325 3.8E-5 T 28-03-2018 IPR000644 CBS domain AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 SUPERFAMILY SSF53697 14 326 3.34E-67 T 28-03-2018 AM348_RS07960 5e80f156927e2a9fc28dc399ae74d328 328 PIRSF PIRSF004692 1 328 1.4E-134 T 28-03-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 SMART SM00420 6 58 4.5E-20 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 6.1E-18 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 Gene3D G3DSA:1.10.10.10 2 74 1.0E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 SUPERFAMILY SSF46785 5 75 2.44E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 Gene3D G3DSA:3.40.50.1360 75 238 9.0E-34 T 28-03-2018 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 SMART SM01134 73 233 1.3E-65 T 28-03-2018 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 Pfam PF00455 DeoR C terminal sensor domain 76 231 3.5E-48 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.3E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.3E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS01030 19263f10b87f58b347891096c6d2d68a 255 SUPERFAMILY SSF100950 77 234 1.15E-26 T 28-03-2018 AM348_RS00965 c9c9a747e2b5dfe44b6e4909aa0cd4e7 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 5 263 41.653 T 28-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM348_RS00965 c9c9a747e2b5dfe44b6e4909aa0cd4e7 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 5 258 2.6E-103 T 28-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM348_RS00965 c9c9a747e2b5dfe44b6e4909aa0cd4e7 264 PIRSF PIRSF000388 1 264 1.7E-97 T 28-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM348_RS00965 c9c9a747e2b5dfe44b6e4909aa0cd4e7 264 Gene3D G3DSA:3.20.20.60 1 263 1.1E-81 T 28-03-2018 AM348_RS00965 c9c9a747e2b5dfe44b6e4909aa0cd4e7 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 3 264 3.2E-125 T 28-03-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 AM348_RS00965 c9c9a747e2b5dfe44b6e4909aa0cd4e7 264 SUPERFAMILY SSF51621 5 263 4.5E-103 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 262 353 1.1E-17 T 28-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 SUPERFAMILY SSF101790 271 361 2.13E-26 T 28-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Gene3D G3DSA:2.40.30.110 277 364 2.2E-19 T 28-03-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 2.3E-82 T 28-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 44.448 T 28-03-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 SUPERFAMILY SSF103025 3 277 8.41E-89 T 28-03-2018 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 359 3.3E-165 T 28-03-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 PIRSF PIRSF006487 1 363 3.1E-78 T 28-03-2018 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Gene3D G3DSA:3.30.1360.120 2 135 1.3E-32 T 28-03-2018 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Gene3D G3DSA:4.10.1250.10 232 276 5.0E-16 T 28-03-2018 AM348_RS09440 aecbc779f4e8d531fb2a0add284b2ad3 364 Gene3D G3DSA:3.30.1360.120 136 231 1.4E-23 T 28-03-2018 AM348_RS09225 f2a5b0e2f84da8eaa27233c7d017f333 96 SUPERFAMILY SSF69786 3 93 3.01E-31 T 28-03-2018 IPR003746 Protein of unknown function DUF167 AM348_RS09225 f2a5b0e2f84da8eaa27233c7d017f333 96 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 5 91 1.7E-33 T 28-03-2018 IPR005228 Conserved hypothetical protein CHP00251 AM348_RS09225 f2a5b0e2f84da8eaa27233c7d017f333 96 Gene3D G3DSA:3.30.1200.10 1 96 5.2E-31 T 28-03-2018 IPR003746 Protein of unknown function DUF167 AM348_RS09225 f2a5b0e2f84da8eaa27233c7d017f333 96 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 19.907 T 28-03-2018 IPR003746 Protein of unknown function DUF167 AM348_RS09225 f2a5b0e2f84da8eaa27233c7d017f333 96 SMART SM01152 7 83 1.1E-36 T 28-03-2018 IPR003746 Protein of unknown function DUF167 AM348_RS09225 f2a5b0e2f84da8eaa27233c7d017f333 96 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 10 81 2.8E-25 T 28-03-2018 IPR003746 Protein of unknown function DUF167 AM348_RS18765 8a4240b798b06a6872e7b2a6df3dd6a8 97 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 65 76 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS18765 8a4240b798b06a6872e7b2a6df3dd6a8 97 SUPERFAMILY SSF54862 43 92 1.4E-8 T 28-03-2018 AM348_RS18765 8a4240b798b06a6872e7b2a6df3dd6a8 97 Gene3D G3DSA:3.30.70.20 40 85 1.7E-5 T 28-03-2018 AM348_RS18765 8a4240b798b06a6872e7b2a6df3dd6a8 97 PIRSF PIRSF036548 3 97 4.6E-37 T 28-03-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 Pfam PF01479 S4 domain 97 143 7.3E-19 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 SMART SM01390 3 95 4.7E-49 T 28-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 3.4E-87 T 28-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 Gene3D G3DSA:1.10.1050.10 145 206 4.2E-18 T 28-03-2018 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 SUPERFAMILY SSF55174 3 206 2.36E-73 T 28-03-2018 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 Gene3D G3DSA:1.10.1050.10 1 101 4.4E-41 T 28-03-2018 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.391 T 28-03-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 SMART SM00363 96 160 8.2E-21 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 3.8E-32 T 28-03-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 28-03-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07460 ab9fd1a3129e767290b3bc1de6b22f16 206 Gene3D G3DSA:3.10.290.10 102 144 1.3E-15 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS03010 f861dd9ad2d603e400784c64ff3e2766 48 Pfam PF08085 Entericidin EcnA/B family 23 43 1.3E-8 T 28-03-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 313 2.8E-103 T 28-03-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 3.4E-165 T 28-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 Hamap MF_00492 Transaldolase [tal]. 2 317 52.056 T 28-03-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 SUPERFAMILY SSF51569 1 316 2.51E-118 T 28-03-2018 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 28-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 Gene3D G3DSA:3.20.20.70 2 316 1.2E-125 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS01650 c30541e2481c92ba87269c179ac19fa4 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 28-03-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-71336 AM348_RS23345 f4bf17513934e1d8770408247e5638b0 230 Gene3D G3DSA:1.10.10.10 1 64 1.5E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23345 f4bf17513934e1d8770408247e5638b0 230 Pfam PF08279 HTH domain 7 60 1.6E-16 T 28-03-2018 IPR013196 Helix-turn-helix, type 11 AM348_RS23345 f4bf17513934e1d8770408247e5638b0 230 SUPERFAMILY SSF46785 5 62 6.02E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23345 f4bf17513934e1d8770408247e5638b0 230 Pfam PF13280 WYL domain 138 223 1.3E-18 T 28-03-2018 IPR026881 WYL domain AM348_RS06990 8493f50e84d7fb26d68962c2b3b57589 75 SMART SM00899 1 72 1.2E-7 T 28-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AM348_RS06990 8493f50e84d7fb26d68962c2b3b57589 75 Pfam PF04023 FeoA domain 10 71 5.2E-8 T 28-03-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 AM348_RS06990 8493f50e84d7fb26d68962c2b3b57589 75 Gene3D G3DSA:2.30.30.90 1 75 2.4E-13 T 28-03-2018 AM348_RS06990 8493f50e84d7fb26d68962c2b3b57589 75 SUPERFAMILY SSF50037 3 73 1.35E-16 T 28-03-2018 IPR008988 Transcriptional repressor, C-terminal AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 280 3.1E-119 T 28-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 Gene3D G3DSA:3.30.300.20 186 300 1.5E-42 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 SUPERFAMILY SSF54814 182 297 1.18E-40 T 28-03-2018 IPR009019 K homology domain, prokaryotic type GO:0003723 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 Pfam PF07650 KH domain 209 285 3.2E-19 T 28-03-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 Hamap MF_00367 GTPase Era [era]. 6 297 35.247 T 28-03-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 171 7.8E-42 T 28-03-2018 IPR005225 Small GTP-binding protein domain GO:0005525 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 Pfam PF01926 50S ribosome-binding GTPase 11 125 2.0E-23 T 28-03-2018 IPR006073 GTP binding domain GO:0005525 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 SUPERFAMILY SSF52540 11 205 5.06E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 Gene3D G3DSA:3.40.50.300 26 179 7.9E-27 T 28-03-2018 AM348_RS11295 ab6b3918add2bd362611b714fd66ec8f 301 Gene3D G3DSA:3.40.50.300 9 25 0.005 T 28-03-2018 AM348_RS02735 91c48fc4e7d0a8aba2f86db372b6529b 219 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 130 216 4.3E-28 T 28-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM348_RS02735 91c48fc4e7d0a8aba2f86db372b6529b 219 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 13 121 1.3E-22 T 28-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM348_RS02735 91c48fc4e7d0a8aba2f86db372b6529b 219 Gene3D G3DSA:3.10.50.40 104 219 2.3E-41 T 28-03-2018 AM348_RS02735 91c48fc4e7d0a8aba2f86db372b6529b 219 SUPERFAMILY SSF54534 21 218 4.12E-56 T 28-03-2018 AM348_RS02735 91c48fc4e7d0a8aba2f86db372b6529b 219 Gene3D G3DSA:1.10.287.460 9 103 5.9E-18 T 28-03-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 Gene3D G3DSA:3.30.70.1400 27 240 4.1E-24 T 28-03-2018 AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 SUPERFAMILY SSF103025 4 242 8.01E-67 T 28-03-2018 AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 321 48.249 T 28-03-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 187 251 3.3E-26 T 28-03-2018 IPR017703 YgfZ/GcvT conserved site AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 SUPERFAMILY SSF101790 244 325 1.11E-25 T 28-03-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 PIRSF PIRSF006487 2 323 1.4E-10 T 28-03-2018 AM348_RS09480 e787dabb120579d40c4100394b41f5d7 327 Pfam PF01571 Aminomethyltransferase folate-binding domain 31 135 7.4E-8 T 28-03-2018 IPR006222 Glycine cleavage T-protein-like, N-terminal AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 SUPERFAMILY SSF53067 5 252 7.66E-63 T 28-03-2018 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 Hamap MF_00986 L-fuculokinase [fucK]. 3 464 62.533 T 28-03-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 435 1.5E-20 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 Gene3D G3DSA:3.30.420.40 247 468 6.7E-38 T 28-03-2018 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 249 8.6E-87 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 PIRSF PIRSF000538 3 471 4.2E-83 T 28-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 Gene3D G3DSA:3.30.420.40 1 246 7.6E-62 T 28-03-2018 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 TIGRFAM TIGR02628 fuculo_kin_coli: L-fuculokinase 4 463 6.9E-235 T 28-03-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 351 371 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS09880 cfe665dc9ce70e5c891c149da0245862 472 SUPERFAMILY SSF53067 255 466 2.64E-39 T 28-03-2018 AM348_RS22200 5ca20a802bc4a9270a7c546f35ac5955 302 PIRSF PIRSF015582 2 302 2.4E-74 T 28-03-2018 IPR011206 Citrate lyase beta subunit-like AM348_RS22200 5ca20a802bc4a9270a7c546f35ac5955 302 Gene3D G3DSA:3.20.20.360 2 269 1.2E-51 T 28-03-2018 AM348_RS22200 5ca20a802bc4a9270a7c546f35ac5955 302 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 15 234 9.7E-83 T 28-03-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 AM348_RS22200 5ca20a802bc4a9270a7c546f35ac5955 302 SUPERFAMILY SSF51621 11 244 9.07E-62 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 Gene3D G3DSA:3.40.50.2300 176 350 8.8E-22 T 28-03-2018 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 Gene3D G3DSA:3.40.50.2300 22 175 1.2E-37 T 28-03-2018 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 Pfam PF13458 Periplasmic binding protein 26 362 1.5E-61 T 28-03-2018 IPR028081 Leucine-binding protein domain AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 SUPERFAMILY SSF53822 24 365 8.83E-91 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 329 344 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 254 272 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06760 25ca56b1decc313ece6b353d6adc9651 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 88 98 3.3E-67 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS09845 23c71d38214f00af8ec2ddbe8b25f6eb 401 SUPERFAMILY SSF53383 5 397 7.31E-111 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS09845 23c71d38214f00af8ec2ddbe8b25f6eb 401 Gene3D G3DSA:3.40.640.10 31 278 8.1E-58 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS09845 23c71d38214f00af8ec2ddbe8b25f6eb 401 Pfam PF00266 Aminotransferase class-V 21 388 1.2E-141 T 28-03-2018 IPR000192 Aminotransferase class V domain AM348_RS09845 23c71d38214f00af8ec2ddbe8b25f6eb 401 Gene3D G3DSA:3.90.1150.10 279 395 4.7E-35 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS09845 23c71d38214f00af8ec2ddbe8b25f6eb 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 2.1E-228 T 28-03-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 AM348_RS09845 23c71d38214f00af8ec2ddbe8b25f6eb 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 28-03-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SMART SM00248 176 201 290.0 T 28-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SMART SM00248 138 172 0.1 T 28-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SMART SM00248 71 100 230.0 T 28-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SMART SM00248 5 34 190.0 T 28-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SMART SM00248 38 67 1.3E-4 T 28-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SMART SM00248 107 134 3800.0 T 28-03-2018 IPR002110 Ankyrin repeat GO:0005515 AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 Pfam PF12796 Ankyrin repeats (3 copies) 112 200 5.5E-12 T 28-03-2018 IPR020683 Ankyrin repeat-containing domain AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 SUPERFAMILY SSF48403 7 199 1.54E-45 T 28-03-2018 IPR020683 Ankyrin repeat-containing domain AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 Gene3D G3DSA:1.25.40.20 1 118 1.1E-23 T 28-03-2018 IPR020683 Ankyrin repeat-containing domain AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 Gene3D G3DSA:1.25.40.20 119 201 1.9E-21 T 28-03-2018 IPR020683 Ankyrin repeat-containing domain AM348_RS09585 c1119c61a851c74a17a53470ca95cdf1 201 Pfam PF13637 Ankyrin repeats (many copies) 13 59 6.0E-10 T 28-03-2018 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 Gene3D G3DSA:3.40.640.10 182 310 2.1E-46 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 4.4E-205 T 28-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 108.83 T 28-03-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 SUPERFAMILY SSF53383 2 425 1.87E-138 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 Pfam PF00202 Aminotransferase class-III 32 395 2.6E-80 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 Gene3D G3DSA:3.90.1150.10 1 181 3.2E-38 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS00845 853b5c09c4349d3f6bfa9db7cf7a0a95 426 Gene3D G3DSA:3.90.1150.10 311 426 9.6E-22 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS12750 9681f387217b7d50278584aa7c9959eb 317 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 310 4.0E-52 T 28-03-2018 IPR010106 Recombination-promoting nuclease RpnA AM348_RS12750 9681f387217b7d50278584aa7c9959eb 317 Pfam PF04754 Putative transposase, YhgA-like 8 209 2.7E-86 T 28-03-2018 IPR006842 Transposase (putative), YhgA-like AM348_RS19975 0883b13d53c761084939fed97efc2b19 186 Pfam PF07273 Protein of unknown function (DUF1439) 27 178 2.4E-54 T 28-03-2018 IPR010835 Protein of unknown function DUF1439 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 Hamap MF_01932 AMP nucleosidase [amn]. 3 484 59.894 T 28-03-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 Gene3D G3DSA:3.30.1730.10 6 170 2.1E-52 T 28-03-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 11 484 4.4E-246 T 28-03-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 SUPERFAMILY SSF53167 9 484 5.19E-162 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 Pfam PF01048 Phosphorylase superfamily 267 431 1.5E-19 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 Gene3D G3DSA:3.40.50.1580 174 467 6.8E-71 T 28-03-2018 AM348_RS19770 51966ad210e972b8d1873f6e235a9bf8 484 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 12 167 1.2E-52 T 28-03-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 AM348_RS07470 e2bc1fde82f0d782c85bad88b790a3f9 127 SUPERFAMILY SSF64263 1 118 3.4E-51 T 28-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07470 e2bc1fde82f0d782c85bad88b790a3f9 127 Pfam PF01196 Ribosomal protein L17 20 116 1.3E-34 T 28-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07470 e2bc1fde82f0d782c85bad88b790a3f9 127 Gene3D G3DSA:3.90.1030.10 1 117 3.1E-50 T 28-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07470 e2bc1fde82f0d782c85bad88b790a3f9 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 28-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07470 e2bc1fde82f0d782c85bad88b790a3f9 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 28-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07470 e2bc1fde82f0d782c85bad88b790a3f9 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 6.7E-51 T 28-03-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS19965 2d9a4485e21852c0cf798654bcb7ea58 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 7.0E-19 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS19965 2d9a4485e21852c0cf798654bcb7ea58 194 SUPERFAMILY SSF55729 12 185 2.8E-42 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS19965 2d9a4485e21852c0cf798654bcb7ea58 194 Gene3D G3DSA:3.40.630.30 9 192 7.7E-31 T 28-03-2018 AM348_RS23060 fa23be7a4afcf05af7c5baa045222c07 46 SUPERFAMILY SSF57840 7 41 6.54E-14 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS23060 fa23be7a4afcf05af7c5baa045222c07 46 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 7.9E-9 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS23060 fa23be7a4afcf05af7c5baa045222c07 46 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.419 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS23060 fa23be7a4afcf05af7c5baa045222c07 46 Pfam PF00444 Ribosomal protein L36 1 41 2.3E-16 T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS23060 fa23be7a4afcf05af7c5baa045222c07 46 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 28-03-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 265 280 - T 28-03-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 Gene3D G3DSA:3.90.228.20 228 307 1.2E-28 T 28-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 Gene3D G3DSA:3.90.228.20 308 538 1.3E-93 T 28-03-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 4 540 5.3E-291 T 28-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 Pfam PF01293 Phosphoenolpyruvate carboxykinase 22 491 6.8E-210 T 28-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 16 538 55.836 T 28-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 PIRSF PIRSF006294 2 540 8.2E-232 T 28-03-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 Gene3D G3DSA:3.40.449.10 23 227 8.5E-77 T 28-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 SUPERFAMILY SSF68923 9 227 1.74E-90 T 28-03-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 AM348_RS07015 c829f243fcc2adfdb58b98d427d3fecc 540 SUPERFAMILY SSF53795 229 540 5.49E-130 T 28-03-2018 AM348_RS12595 9b0b62f90c2d7611160e7eca2200f74d 166 Gene3D G3DSA:3.40.30.10 84 166 2.7E-14 T 28-03-2018 AM348_RS12595 9b0b62f90c2d7611160e7eca2200f74d 166 SUPERFAMILY SSF52833 16 165 9.95E-51 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS12595 9b0b62f90c2d7611160e7eca2200f74d 166 PIRSF PIRSF000216 1 166 2.0E-53 T 28-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12595 9b0b62f90c2d7611160e7eca2200f74d 166 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 24 166 2.3E-50 T 28-03-2018 AM348_RS12595 9b0b62f90c2d7611160e7eca2200f74d 166 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 22 166 2.7E-52 T 28-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12595 9b0b62f90c2d7611160e7eca2200f74d 166 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 123 141 - T 28-03-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 Gene3D G3DSA:3.40.190.10 193 263 1.4E-9 T 28-03-2018 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.4E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 SUPERFAMILY SSF46785 2 85 4.67E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 Pfam PF03466 LysR substrate binding domain 92 269 3.0E-16 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 Gene3D G3DSA:3.40.190.10 91 192 1.6E-5 T 28-03-2018 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-9 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 SUPERFAMILY SSF53850 92 293 1.48E-19 T 28-03-2018 AM348_RS08090 df0c272e9eb47c6a8f841e7cb6e9da39 297 Gene3D G3DSA:1.10.10.10 1 83 1.8E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07045 48174941312db1e8485d0798f606d6f3 186 SUPERFAMILY SSF55811 3 182 2.98E-39 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS07045 48174941312db1e8485d0798f606d6f3 186 Gene3D G3DSA:3.90.79.10 8 186 2.4E-34 T 28-03-2018 AM348_RS07045 48174941312db1e8485d0798f606d6f3 186 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS07045 48174941312db1e8485d0798f606d6f3 186 Pfam PF00293 NUDIX domain 47 150 7.3E-13 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 106 128 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 216 244 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 318 337 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 287 313 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 263 284 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 349 369 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 148 166 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 PRINTS PR00174 LacY proton/sugar symporter family signature 71 100 4.0E-84 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 Pfam PF01306 LacY proton/sugar symporter 6 410 6.7E-153 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 SUPERFAMILY SSF103473 18 408 4.01E-44 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 9 404 3.4E-149 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 Gene3D G3DSA:1.20.1250.20 6 207 5.0E-18 T 28-03-2018 AM348_RS15680 2cc9f0a6e3785172efab47e87e81c075 419 Gene3D G3DSA:1.20.1250.20 208 416 6.3E-24 T 28-03-2018 AM348_RS02180 da9aae153a04f1c18f18b7704000ac2a 84 Gene3D G3DSA:3.10.20.30 1 73 3.6E-11 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS02180 da9aae153a04f1c18f18b7704000ac2a 84 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 80 1.6E-18 T 28-03-2018 AM348_RS02180 da9aae153a04f1c18f18b7704000ac2a 84 SUPERFAMILY SSF54292 5 79 7.21E-15 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS16100 00c6b809cf80918c48e8fc213076f08d 249 SMART SM00382 101 226 2.0E-4 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS16100 00c6b809cf80918c48e8fc213076f08d 249 Pfam PF01695 IstB-like ATP binding protein 68 208 7.7E-18 T 28-03-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AM348_RS16100 00c6b809cf80918c48e8fc213076f08d 249 PIRSF PIRSF003073 4 249 1.1E-34 T 28-03-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein AM348_RS16100 00c6b809cf80918c48e8fc213076f08d 249 Gene3D G3DSA:3.40.50.300 51 226 3.7E-15 T 28-03-2018 AM348_RS16100 00c6b809cf80918c48e8fc213076f08d 249 SUPERFAMILY SSF52540 68 232 7.41E-18 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15615 ac28bad064a24cd9098b0866af138b12 210 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 205 9.0E-81 T 28-03-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 AM348_RS15615 ac28bad064a24cd9098b0866af138b12 210 SUPERFAMILY SSF101473 2 206 5.1E-58 T 28-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS15615 ac28bad064a24cd9098b0866af138b12 210 SMART SM01120 32 206 3.2E-79 T 28-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS15615 ac28bad064a24cd9098b0866af138b12 210 Pfam PF02734 DAK2 domain 32 205 6.1E-56 T 28-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS04885 ea5a16acaa7a593fc5c991369ee7d535 297 SUPERFAMILY SSF103481 42 145 6.8E-14 T 28-03-2018 AM348_RS04885 ea5a16acaa7a593fc5c991369ee7d535 297 SUPERFAMILY SSF103481 189 285 1.16E-7 T 28-03-2018 AM348_RS04885 ea5a16acaa7a593fc5c991369ee7d535 297 TIGRFAM TIGR00688 rarD: protein RarD 8 261 1.8E-113 T 28-03-2018 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 AM348_RS04885 ea5a16acaa7a593fc5c991369ee7d535 297 Pfam PF00892 EamA-like transporter family 9 142 2.1E-14 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 28-03-2018 IPR020081 SsrA-binding protein, conserved site AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 5.1E-53 T 28-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 71.229 T 28-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 SUPERFAMILY SSF74982 8 138 9.29E-50 T 28-03-2018 IPR023620 Small protein B AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 Pfam PF01668 SmpB protein 14 157 5.3E-56 T 28-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 Gene3D G3DSA:2.40.280.10 14 133 4.7E-45 T 28-03-2018 IPR023620 Small protein B AM348_RS11015 2f5abd2f9f66567b809c68939a0de9ff 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 3.0E-68 T 28-03-2018 IPR000037 SsrA-binding protein GO:0003723 AM348_RS03425 85854ed0a803a344ba79c35c623036c5 104 Pfam PF04341 Protein of unknown function, DUF485 11 98 2.3E-32 T 28-03-2018 IPR007436 Protein of unknown function DUF485 AM348_RS02715 65418f81f47a3b1419666d76470ba208 321 SUPERFAMILY SSF103481 222 310 1.57E-5 T 28-03-2018 AM348_RS02715 65418f81f47a3b1419666d76470ba208 321 Pfam PF00892 EamA-like transporter family 3 137 1.6E-15 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS02715 65418f81f47a3b1419666d76470ba208 321 SUPERFAMILY SSF103481 43 142 1.22E-8 T 28-03-2018 AM348_RS11735 3410e849d1e88ea1c381460196b177c1 212 PIRSF PIRSF028103 27 202 1.4E-67 T 28-03-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 AM348_RS11735 3410e849d1e88ea1c381460196b177c1 212 Pfam PF13740 ACT domain 29 104 5.1E-25 T 28-03-2018 AM348_RS11735 3410e849d1e88ea1c381460196b177c1 212 SUPERFAMILY SSF55021 28 110 1.64E-16 T 28-03-2018 AM348_RS11735 3410e849d1e88ea1c381460196b177c1 212 Gene3D G3DSA:3.30.70.260 115 202 1.1E-13 T 28-03-2018 AM348_RS11735 3410e849d1e88ea1c381460196b177c1 212 SUPERFAMILY SSF55021 114 201 2.56E-17 T 28-03-2018 AM348_RS11735 3410e849d1e88ea1c381460196b177c1 212 Gene3D G3DSA:3.30.70.260 29 111 3.3E-11 T 28-03-2018 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 Pfam PF01070 FMN-dependent dehydrogenase 13 375 4.8E-124 T 28-03-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 28-03-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 SUPERFAMILY SSF51395 223 375 2.81E-99 T 28-03-2018 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 SUPERFAMILY SSF51395 6 193 2.81E-99 T 28-03-2018 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 Gene3D G3DSA:3.20.20.70 2 379 5.5E-96 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 PIRSF PIRSF000138 2 379 4.1E-121 T 28-03-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 AM348_RS06005 04e9673f6ebfe2388b749b28b27ff87c 396 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 74.125 T 28-03-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 Gene3D G3DSA:3.30.465.10 338 429 1.8E-19 T 28-03-2018 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 SUPERFAMILY SSF54631 192 329 5.68E-22 T 28-03-2018 AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 Pfam PF00571 CBS domain 278 326 1.1E-4 T 28-03-2018 IPR000644 CBS domain AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 Gene3D G3DSA:3.10.580.10 185 337 3.3E-19 T 28-03-2018 AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 Pfam PF01595 Domain of unknown function DUF21 11 184 7.6E-50 T 28-03-2018 IPR002550 Domain of unknown function DUF21 AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 SMART SM01091 342 420 5.1E-25 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 Pfam PF03471 Transporter associated domain 344 418 3.1E-18 T 28-03-2018 IPR005170 Transporter-associated domain AM348_RS11055 67a2dd4a720a85e7ca1525c256ef396f 429 SUPERFAMILY SSF56176 340 423 1.61E-21 T 28-03-2018 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 AM348_RS21435 7017ff62c4464267d09c6da04655a996 257 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 34 253 6.9E-87 T 28-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 AM348_RS21435 7017ff62c4464267d09c6da04655a996 257 Gene3D G3DSA:3.40.190.10 119 218 1.4E-32 T 28-03-2018 AM348_RS21435 7017ff62c4464267d09c6da04655a996 257 Gene3D G3DSA:3.40.190.10 25 118 5.3E-20 T 28-03-2018 AM348_RS21435 7017ff62c4464267d09c6da04655a996 257 Pfam PF13531 Bacterial extracellular solute-binding protein 29 254 7.1E-50 T 28-03-2018 AM348_RS21435 7017ff62c4464267d09c6da04655a996 257 SUPERFAMILY SSF53850 28 255 4.67E-70 T 28-03-2018 AM348_RS21435 7017ff62c4464267d09c6da04655a996 257 PIRSF PIRSF004846 1 257 5.8E-84 T 28-03-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689|GO:0030288 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 1.5E-16 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 1.5E-16 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 1.5E-16 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 253 265 1.5E-16 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 350 367 1.5E-16 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 Gene3D G3DSA:2.40.160.10 10 399 4.6E-52 T 28-03-2018 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 SUPERFAMILY SSF56935 22 399 3.92E-81 T 28-03-2018 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00183 E.coli/Salmonella-type porin signature 297 316 2.1E-70 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00183 E.coli/Salmonella-type porin signature 259 276 2.1E-70 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 2.1E-70 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 2.1E-70 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 2.1E-70 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 2.1E-70 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 350 366 - T 28-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM348_RS14330 6052fb8d127b3ba489297205cc5e28c1 399 Pfam PF00267 Gram-negative porin 27 399 1.4E-155 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 5.4E-64 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 5.4E-64 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 5.4E-64 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 5.4E-64 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 5.4E-64 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 5.4E-64 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 Pfam PF01578 Cytochrome C assembly protein 8 184 1.4E-31 T 28-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM348_RS12930 255f9397cc2a0fc12c91a12908ea99fa 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 3.6E-84 T 28-03-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 SUPERFAMILY SSF53383 12 394 2.02E-126 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 11 398 45.199 T 28-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 Gene3D G3DSA:3.90.1150.10 290 405 7.2E-18 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 Gene3D G3DSA:3.90.1150.10 5 169 4.7E-49 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 220 257 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 Hamap MF_01173 Succinylornithine transaminase [astC]. 1 406 74.467 T 28-03-2018 IPR026330 Succinylornithine transaminase GO:0006527|GO:0006593|GO:0043825 KEGG: 00330+2.6.1.81 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 Pfam PF00202 Aminotransferase class-III 20 394 2.0E-122 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 13 397 1.9E-164 T 28-03-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 5 400 1.6E-223 T 28-03-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 Gene3D G3DSA:3.40.640.10 170 289 7.5E-44 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 PIRSF PIRSF000521 167 400 2.2E-36 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS19020 42eb0f7f008bd2deec1c68c9eafe27fd 406 PIRSF PIRSF000521 26 157 3.3E-6 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 Gene3D G3DSA:3.90.180.10 1 142 6.9E-38 T 28-03-2018 AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 92 1.7E-10 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 Pfam PF00107 Zinc-binding dehydrogenase 158 268 2.2E-21 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 SUPERFAMILY SSF51735 117 278 5.69E-42 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 SMART SM00829 11 327 3.1E-41 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 SUPERFAMILY SSF50129 3 151 4.11E-38 T 28-03-2018 IPR011032 GroES-like AM348_RS17265 38fb2326a25cb21462bfe29c0e11721d 329 Gene3D G3DSA:3.40.50.720 143 313 2.2E-31 T 28-03-2018 AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 1.1E-4 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 323 1.4E-140 T 28-03-2018 IPR014188 Acrylyl-CoA reductase AcuI AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 Gene3D G3DSA:3.40.50.720 154 294 6.3E-14 T 28-03-2018 AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 SMART SM00829 12 321 8.9E-4 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 SUPERFAMILY SSF50129 1 144 1.21E-46 T 28-03-2018 IPR011032 GroES-like AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 Pfam PF00107 Zinc-binding dehydrogenase 158 279 3.5E-14 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 Gene3D G3DSA:3.90.180.10 1 153 6.1E-31 T 28-03-2018 AM348_RS07700 62e2623aacac9e7abb4b4e210d196d9c 324 SUPERFAMILY SSF51735 116 285 1.63E-36 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS19555 1e801fa748e3fc51150c3f7afcc75dfc 311 PIRSF PIRSF020623 1 309 3.7E-130 T 28-03-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 AM348_RS19555 1e801fa748e3fc51150c3f7afcc75dfc 311 Pfam PF08223 PaaX-like protein C-terminal domain 186 284 1.8E-30 T 28-03-2018 IPR013225 PaaX-like, C-terminal AM348_RS19555 1e801fa748e3fc51150c3f7afcc75dfc 311 Pfam PF07848 PaaX-like protein 22 90 5.2E-25 T 28-03-2018 IPR012906 PaaX-like, N-terminal AM348_RS19555 1e801fa748e3fc51150c3f7afcc75dfc 311 Gene3D G3DSA:1.10.10.10 20 103 1.6E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19555 1e801fa748e3fc51150c3f7afcc75dfc 311 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 24 306 2.1E-111 T 28-03-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 AM348_RS11690 094dd2a8422571803037fa354a2ad41c 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 28-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM348_RS11690 094dd2a8422571803037fa354a2ad41c 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 405 8.3E-131 T 28-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM348_RS11690 094dd2a8422571803037fa354a2ad41c 429 Pfam PF00860 Permease family 16 383 2.5E-108 T 28-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SMART SM00316 620 690 3.6E-27 T 28-03-2018 IPR022967 RNA-binding domain, S1 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF00575 S1 RNA binding domain 619 690 2.7E-22 T 28-03-2018 IPR003029 S1 domain GO:0003676 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.496 T 28-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF54211 4 144 1.27E-49 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 2.2E-4 T 28-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 2.8E-14 T 28-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF55666 145 235 7.59E-32 T 28-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 PIRSF PIRSF005499 2 709 4.9E-301 T 28-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM348_RS08145 71c723853780c508060539e6cc88a483 710 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 28-03-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 6.1E-26 T 28-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Gene3D G3DSA:3.30.230.70 317 544 8.6E-58 T 28-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF54211 301 492 2.73E-46 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF54791 554 622 2.81E-17 T 28-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Gene3D G3DSA:2.40.50.140 617 698 1.6E-26 T 28-03-2018 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Gene3D G3DSA:1.10.10.400 249 316 6.4E-20 T 28-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Gene3D G3DSA:3.30.230.70 13 248 2.8E-54 T 28-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SMART SM00322 552 617 4.2E-12 T 28-03-2018 IPR004087 K Homology domain GO:0003676 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF50249 608 693 1.39E-22 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF00013 KH domain 556 614 8.0E-9 T 28-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 2.0E-18 T 28-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 3.0E-21 T 28-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF46915 226 325 1.7E-25 T 28-03-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 AM348_RS08145 71c723853780c508060539e6cc88a483 710 Gene3D G3DSA:3.30.1370.10 554 616 1.6E-13 T 28-03-2018 IPR004088 K Homology domain, type 1 GO:0003723 AM348_RS08145 71c723853780c508060539e6cc88a483 710 SUPERFAMILY SSF55666 450 547 3.65E-27 T 28-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 SUPERFAMILY SSF48008 98 229 3.14E-27 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 Gene3D G3DSA:1.10.10.10 3 73 5.6E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 1.5E-10 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 1.5E-10 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 SMART SM00345 12 71 2.3E-22 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 SUPERFAMILY SSF46785 6 75 1.43E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 Gene3D G3DSA:1.20.120.530 83 244 7.2E-31 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 SMART SM00895 100 224 1.6E-21 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 71 3.9E-21 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS06010 24419ddaa00cf6aa1a218d859a899665 258 Pfam PF07729 FCD domain 100 222 3.1E-24 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 Gene3D G3DSA:3.40.50.10440 12 185 5.3E-68 T 28-03-2018 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 SUPERFAMILY SSF82549 2 331 1.54E-106 T 28-03-2018 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 SMART SM01120 382 548 5.5E-48 T 28-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 SUPERFAMILY SSF101473 349 548 6.93E-51 T 28-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 Gene3D G3DSA:3.30.1180.20 186 331 7.3E-34 T 28-03-2018 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 TIGRFAM TIGR02361 dak_ATP: dihydroxyacetone kinase 3 547 1.3E-193 T 28-03-2018 IPR012734 Dihydroxyacetone kinase GO:0004371|GO:0005524|GO:0006071 KEGG: 00051+2.7.1.28|KEGG: 00561+2.7.1.29|KEGG: 00680+2.7.1.29|MetaCyc: PWY-6131|Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 Pfam PF02733 Dak1 domain 32 324 7.4E-99 T 28-03-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS08535 b4ca156641f229bceaf3b92ef1c96d84 552 Pfam PF02734 DAK2 domain 382 547 1.1E-38 T 28-03-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS09405 4d8a2752847a5483ee55bf1e6c93de87 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 37.158 T 28-03-2018 IPR023771 Cell division protein ZapA, eubacteria AM348_RS09405 4d8a2752847a5483ee55bf1e6c93de87 109 SUPERFAMILY SSF102829 6 94 1.12E-24 T 28-03-2018 IPR007838 Cell division protein ZapA-like AM348_RS09405 4d8a2752847a5483ee55bf1e6c93de87 109 Pfam PF05164 Cell division protein ZapA 6 90 3.9E-20 T 28-03-2018 IPR007838 Cell division protein ZapA-like AM348_RS02640 1dea3344e167cfc79b5abf0d1d8631c6 356 SUPERFAMILY SSF51004 41 335 6.54E-38 T 28-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM348_RS02640 1dea3344e167cfc79b5abf0d1d8631c6 356 Gene3D G3DSA:2.130.10.10 35 338 4.1E-38 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS17180 4a4b22e0d70560d5238787f9b4483e1d 77 Pfam PF10735 Protein of unknown function (DUF2526) 1 77 1.5E-42 T 28-03-2018 IPR019671 Protein of unknown function DUF2526 AM348_RS13960 512b81967ced8268c000ea5f614a0bff 111 PIRSF PIRSF028773 1 111 6.7E-54 T 28-03-2018 IPR007458 Protein of unknown function DUF496 AM348_RS13960 512b81967ced8268c000ea5f614a0bff 111 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 11 98 4.0E-43 T 28-03-2018 IPR007458 Protein of unknown function DUF496 AM348_RS13960 512b81967ced8268c000ea5f614a0bff 111 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 8 102 25.672 T 28-03-2018 IPR007458 Protein of unknown function DUF496 AM348_RS13960 512b81967ced8268c000ea5f614a0bff 111 Pfam PF04363 Protein of unknown function (DUF496) 8 99 6.1E-46 T 28-03-2018 IPR007458 Protein of unknown function DUF496 AM348_RS21460 b475f4be092a39fbf9d75749635ef693 338 SUPERFAMILY SSF51735 1 336 8.89E-102 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS21460 b475f4be092a39fbf9d75749635ef693 338 Gene3D G3DSA:3.40.50.720 1 207 2.0E-45 T 28-03-2018 AM348_RS21460 b475f4be092a39fbf9d75749635ef693 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 2.9E-66 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS21460 b475f4be092a39fbf9d75749635ef693 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 6.7E-150 T 28-03-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-70370 AM348_RS21460 b475f4be092a39fbf9d75749635ef693 338 Gene3D G3DSA:3.90.25.10 254 337 1.0E-19 T 28-03-2018 AM348_RS21460 b475f4be092a39fbf9d75749635ef693 338 Gene3D G3DSA:3.90.25.10 208 253 2.2E-12 T 28-03-2018 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 SUPERFAMILY SSF53850 101 305 3.02E-32 T 28-03-2018 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 Gene3D G3DSA:1.10.10.10 6 93 4.4E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ 9 304 1.3E-91 T 28-03-2018 IPR012787 Pca transcription factor PcaQ GO:0003677|GO:0019619|GO:0045893 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.3E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.3E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.3E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 SUPERFAMILY SSF46785 10 120 2.49E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 Pfam PF03466 LysR substrate binding domain 99 304 4.0E-33 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 Gene3D G3DSA:3.40.190.10 98 186 2.9E-16 T 28-03-2018 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 7.2E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS17000 7ff4184bc5e77663c036ec89eee89585 307 Gene3D G3DSA:3.40.190.10 187 275 4.5E-13 T 28-03-2018 AM348_RS08715 8c5075b0f23bb5ac7a3da069b2d13e1c 206 Gene3D G3DSA:2.30.30.410 14 90 7.5E-10 T 28-03-2018 AM348_RS08715 8c5075b0f23bb5ac7a3da069b2d13e1c 206 Pfam PF08239 Bacterial SH3 domain 35 83 1.8E-9 T 28-03-2018 IPR003646 SH3-like domain, bacterial-type AM348_RS08715 8c5075b0f23bb5ac7a3da069b2d13e1c 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 2.7E-51 T 28-03-2018 IPR016476 SH3 domain protein AM348_RS08715 8c5075b0f23bb5ac7a3da069b2d13e1c 206 Gene3D G3DSA:1.20.5.50 91 170 1.3E-6 T 28-03-2018 AM348_RS08715 8c5075b0f23bb5ac7a3da069b2d13e1c 206 PIRSF PIRSF006158 1 205 7.4E-70 T 28-03-2018 IPR016476 SH3 domain protein AM348_RS08715 8c5075b0f23bb5ac7a3da069b2d13e1c 206 SMART SM00287 23 88 1.4E-10 T 28-03-2018 IPR003646 SH3-like domain, bacterial-type AM348_RS17195 9b377bc2d378992a5f1a774f1012cdeb 191 Pfam PF01381 Helix-turn-helix 16 69 5.1E-15 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17195 9b377bc2d378992a5f1a774f1012cdeb 191 SUPERFAMILY SSF51182 56 184 5.48E-15 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS17195 9b377bc2d378992a5f1a774f1012cdeb 191 Gene3D G3DSA:1.10.260.40 1 74 9.2E-19 T 28-03-2018 AM348_RS17195 9b377bc2d378992a5f1a774f1012cdeb 191 Gene3D G3DSA:2.60.120.10 75 188 2.7E-10 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS17195 9b377bc2d378992a5f1a774f1012cdeb 191 SMART SM00530 15 70 2.0E-16 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17195 9b377bc2d378992a5f1a774f1012cdeb 191 SUPERFAMILY SSF47413 8 74 6.44E-18 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS09010 1619d8305a41e30f6b7e7a44e76384be 113 PIRSF PIRSF004761 1 113 5.1E-38 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS09010 1619d8305a41e30f6b7e7a44e76384be 113 Hamap MF_00213 Probable hydrogenase nickel incorporation protein HypA [hypA]. 1 113 24.596 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS09010 1619d8305a41e30f6b7e7a44e76384be 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 28-03-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site AM348_RS09010 1619d8305a41e30f6b7e7a44e76384be 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 4.3E-44 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS09010 1619d8305a41e30f6b7e7a44e76384be 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 2.3E-32 T 28-03-2018 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 AM348_RS20980 2583be41cc48ab9ec49309378a8da638 186 SUPERFAMILY SSF48498 97 175 5.16E-6 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS20980 2583be41cc48ab9ec49309378a8da638 186 SUPERFAMILY SSF46689 2 80 1.39E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS20980 2583be41cc48ab9ec49309378a8da638 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 6.2E-6 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS20980 2583be41cc48ab9ec49309378a8da638 186 Gene3D G3DSA:1.10.357.10 1 179 1.6E-28 T 28-03-2018 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 4 101 1.0E-28 T 28-03-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 2 471 64.355 T 28-03-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 Gene3D G3DSA:3.30.70.1170 25 96 7.1E-21 T 28-03-2018 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 87 101 6.4E-28 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 185 197 6.4E-28 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 235 251 6.4E-28 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 289 306 6.4E-28 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 118 128 6.4E-28 T 28-03-2018 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 Pfam PF01189 16S rRNA methyltransferase RsmB/F 114 305 8.9E-46 T 28-03-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 SUPERFAMILY SSF53335 3 307 7.29E-67 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 417 466 1.1E-8 T 28-03-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 37 306 1.7E-109 T 28-03-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 184 195 - T 28-03-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS15270 705f5848fc9f1da25482f74c949e30b4 472 Gene3D G3DSA:3.40.50.150 97 313 9.9E-61 T 28-03-2018 AM348_RS13705 3d5acc2c50c3c75a93c51588f645f34a 162 PIRSF PIRSF000441 3 161 4.4E-45 T 28-03-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 AM348_RS13705 3d5acc2c50c3c75a93c51588f645f34a 162 SUPERFAMILY SSF51161 14 158 2.63E-31 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS13705 3d5acc2c50c3c75a93c51588f645f34a 162 TIGRFAM TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB 17 162 4.2E-87 T 28-03-2018 IPR024027 Colanic acid biosynthesis, acetyltransferase, WcaB GO:0016747 AM348_RS13705 3d5acc2c50c3c75a93c51588f645f34a 162 Gene3D G3DSA:2.160.10.10 22 160 1.1E-24 T 28-03-2018 AM348_RS13705 3d5acc2c50c3c75a93c51588f645f34a 162 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS13705 3d5acc2c50c3c75a93c51588f645f34a 162 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 141 4.7E-9 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 SMART SM00448 3 113 2.6E-34 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 SMART SM00862 153 225 3.0E-17 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 Gene3D G3DSA:3.40.50.2300 1 127 3.6E-32 T 28-03-2018 AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 Gene3D G3DSA:1.10.10.10 128 230 7.1E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 225 2.9E-16 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 SUPERFAMILY SSF52172 3 190 5.55E-36 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS22665 93deb916cf0a7161d8ea688458694722 230 Pfam PF00072 Response regulator receiver domain 5 113 3.2E-27 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 341 2.0E-39 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 Gene3D G3DSA:3.30.1330.10 31 161 6.9E-53 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 SUPERFAMILY SSF55326 7 170 4.19E-53 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 Gene3D G3DSA:3.90.650.10 171 345 2.4E-62 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 SUPERFAMILY SSF56042 171 342 2.69E-64 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 47.163 T 28-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 335 2.3E-155 T 28-03-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 AM348_RS11675 afa5b01c147ed7f784148d29ebf9e797 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 164 3.1E-15 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS03920 a80b278189e1cf4bfa1155edb4042333 162 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 147 2.2E-51 T 28-03-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 AM348_RS03920 a80b278189e1cf4bfa1155edb4042333 162 Hamap MF_01181 Regulator of sigma D [rsd]. 1 151 40.581 T 28-03-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd AM348_RS03920 a80b278189e1cf4bfa1155edb4042333 162 PIRSF PIRSF016548 1 159 2.7E-58 T 28-03-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 AM348_RS08565 abffb4bc5d7d84d270918960a0217325 387 Gene3D G3DSA:1.20.1090.10 189 387 5.8E-70 T 28-03-2018 AM348_RS08565 abffb4bc5d7d84d270918960a0217325 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 177 205 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS08565 abffb4bc5d7d84d270918960a0217325 387 SUPERFAMILY SSF56796 4 386 2.75E-134 T 28-03-2018 AM348_RS08565 abffb4bc5d7d84d270918960a0217325 387 Gene3D G3DSA:3.40.50.1970 11 186 5.9E-43 T 28-03-2018 AM348_RS08565 abffb4bc5d7d84d270918960a0217325 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS08565 abffb4bc5d7d84d270918960a0217325 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 379 8.3E-128 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS05750 040190674c07f94fe9fa97a6e02a0376 363 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 9 335 7.1E-94 T 28-03-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AM348_RS05750 040190674c07f94fe9fa97a6e02a0376 363 Pfam PF02378 Phosphotransferase system, EIIC 19 238 2.1E-9 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 SUPERFAMILY SSF56801 16 401 5.23E-62 T 28-03-2018 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 12 433 4.1E-234 T 28-03-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 Pfam PF00501 AMP-binding enzyme 79 290 6.3E-15 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 Gene3D G3DSA:3.40.50.980 97 259 7.1E-22 T 28-03-2018 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 PIRSF PIRSF006444 1 435 5.3E-207 T 28-03-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 Gene3D G3DSA:3.40.50.980 9 96 0.37 T 28-03-2018 AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 Pfam PF14535 AMP-binding enzyme C-terminal domain 337 433 4.1E-27 T 28-03-2018 IPR028154 AMP-dependent ligase, C-terminal AM348_RS19560 8cf16a1cab25778f4aa0862d158f9ddf 439 Gene3D G3DSA:3.30.300.30 327 434 6.2E-9 T 28-03-2018 AM348_RS09565 16bdd84ff82e8ddccaf83f8837c739e2 168 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 4 134 5.7E-28 T 28-03-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0042710 AM348_RS09565 16bdd84ff82e8ddccaf83f8837c739e2 168 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 130 4.0E-25 T 28-03-2018 AM348_RS09565 16bdd84ff82e8ddccaf83f8837c739e2 168 Pfam PF13994 PgaD-like protein 5 131 1.5E-30 T 28-03-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0042710 AM348_RS10220 1658b5b9bc82348b1e3198cf7dbdce2a 232 SUPERFAMILY SSF54001 56 134 8.44E-9 T 28-03-2018 AM348_RS10220 1658b5b9bc82348b1e3198cf7dbdce2a 232 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 71 181 1.8E-17 T 28-03-2018 IPR010319 Transglutaminase-like cysteine peptidase, predicted AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 41.363 T 28-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Gene3D G3DSA:3.40.50.10490 243 454 7.4E-59 T 28-03-2018 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 3.8E-269 T 28-03-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Gene3D G3DSA:3.60.20.10 2 242 4.2E-68 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 SUPERFAMILY SSF53697 245 609 8.44E-114 T 28-03-2018 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Gene3D G3DSA:3.40.50.10490 455 607 2.8E-51 T 28-03-2018 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Pfam PF01380 SIS domain 462 591 6.1E-31 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Pfam PF01380 SIS domain 289 418 2.8E-34 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 Pfam PF13522 Glutamine amidotransferase domain 65 182 5.4E-21 T 28-03-2018 AM348_RS05300 880db96c8ec0f8e937dae3a9d4c0e9de 609 SUPERFAMILY SSF56235 2 232 2.32E-74 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 Gene3D G3DSA:3.20.20.140 72 475 1.1E-35 T 28-03-2018 AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 Gene3D G3DSA:2.30.40.10 2 71 1.7E-18 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 SUPERFAMILY SSF51338 2 64 2.25E-20 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 SUPERFAMILY SSF51338 495 545 2.25E-20 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 Gene3D G3DSA:2.30.40.10 476 541 9.4E-5 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 SUPERFAMILY SSF51556 63 125 6.5E-45 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 SUPERFAMILY SSF51556 205 496 6.5E-45 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS23390 465e168d696b9c9eb63e72c4028d2b03 622 Pfam PF07969 Amidohydrolase family 52 536 6.1E-125 T 28-03-2018 IPR013108 Amidohydrolase 3 AM348_RS11135 a93e44bed9189ae46822b1df815a2135 245 Pfam PF13525 Outer membrane lipoprotein 28 236 4.4E-85 T 28-03-2018 AM348_RS11135 a93e44bed9189ae46822b1df815a2135 245 Gene3D G3DSA:1.25.20.10 30 243 2.3E-15 T 28-03-2018 AM348_RS11135 a93e44bed9189ae46822b1df815a2135 245 SUPERFAMILY SSF48452 27 121 1.92E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS11135 a93e44bed9189ae46822b1df815a2135 245 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 243 4.4E-88 T 28-03-2018 IPR017689 Outer membrane protein assembly factor BamD AM348_RS11135 a93e44bed9189ae46822b1df815a2135 245 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 39.121 T 28-03-2018 IPR017689 Outer membrane protein assembly factor BamD AM348_RS23335 5481246b7fe8138989393f7b38f66736 179 Pfam PF11622 Protein of unknown function (DUF3251) 20 177 3.6E-78 T 28-03-2018 IPR021658 Domain of unknown function DUF3251 AM348_RS23335 5481246b7fe8138989393f7b38f66736 179 Gene3D G3DSA:2.60.40.1620 43 175 8.3E-56 T 28-03-2018 IPR021658 Domain of unknown function DUF3251 AM348_RS14165 6a8ff522585ae3e5f84ee7206237c82b 181 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 3 180 4.4E-64 T 28-03-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14165 6a8ff522585ae3e5f84ee7206237c82b 181 PIRSF PIRSF006135 1 181 6.1E-64 T 28-03-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14165 6a8ff522585ae3e5f84ee7206237c82b 181 SUPERFAMILY SSF52540 2 181 2.84E-58 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14165 6a8ff522585ae3e5f84ee7206237c82b 181 Gene3D G3DSA:3.40.50.300 2 181 6.9E-64 T 28-03-2018 AM348_RS01035 1425992feff18733b9d66b8a342c1718 327 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 36 323 1.9E-102 T 28-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM348_RS01035 1425992feff18733b9d66b8a342c1718 327 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 327 1.7E-112 T 28-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM348_RS01035 1425992feff18733b9d66b8a342c1718 327 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 327 35.832 T 28-03-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 AM348_RS01035 1425992feff18733b9d66b8a342c1718 327 SUPERFAMILY SSF53659 4 327 5.31E-107 T 28-03-2018 AM348_RS01035 1425992feff18733b9d66b8a342c1718 327 Gene3D G3DSA:3.40.718.10 2 327 8.3E-127 T 28-03-2018 AM348_RS14690 fa8464fb0b44a549543d28c4ebab2df9 329 Pfam PF06147 Protein of unknown function (DUF968) 129 326 3.9E-81 T 28-03-2018 IPR010373 Protein of unknown function DUF968 AM348_RS14690 fa8464fb0b44a549543d28c4ebab2df9 329 Gene3D G3DSA:3.30.50.20 256 324 3.1E-15 T 28-03-2018 AM348_RS14690 fa8464fb0b44a549543d28c4ebab2df9 329 SMART SM00507 246 295 6.9E-4 T 28-03-2018 IPR003615 HNH nuclease AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 SUPERFAMILY SSF46785 1 85 2.69E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 SUPERFAMILY SSF53850 91 322 1.02E-45 T 28-03-2018 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 Gene3D G3DSA:3.40.190.10 255 324 0.023 T 28-03-2018 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 Pfam PF03466 LysR substrate binding domain 92 292 1.2E-41 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 Gene3D G3DSA:3.40.190.10 91 180 7.1E-21 T 28-03-2018 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 6.0E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 Gene3D G3DSA:1.10.10.10 1 85 2.9E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS16470 6e1974038da71880aadf16c6f260d09e 324 Gene3D G3DSA:3.40.190.10 181 254 1.6E-23 T 28-03-2018 AM348_RS19460 9c5a9eea67b7616725f4a8ac7746e6eb 233 Gene3D G3DSA:3.40.50.300 1 231 1.0E-66 T 28-03-2018 AM348_RS19460 9c5a9eea67b7616725f4a8ac7746e6eb 233 SMART SM00382 34 222 1.0E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS19460 9c5a9eea67b7616725f4a8ac7746e6eb 233 Pfam PF00005 ABC transporter 25 173 9.5E-36 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS19460 9c5a9eea67b7616725f4a8ac7746e6eb 233 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 224 1.5E-111 T 28-03-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 AM348_RS19460 9c5a9eea67b7616725f4a8ac7746e6eb 233 SUPERFAMILY SSF52540 5 224 2.28E-70 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19460 9c5a9eea67b7616725f4a8ac7746e6eb 233 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 Pfam PF00005 ABC transporter 18 184 3.8E-20 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 Pfam PF00005 ABC transporter 336 467 1.6E-23 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 Pfam PF12848 ABC transporter 224 309 8.4E-21 T 28-03-2018 IPR032781 ABC-transporter extension domain AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 Gene3D G3DSA:3.40.50.300 3 282 4.5E-52 T 28-03-2018 AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 SUPERFAMILY SSF52540 298 523 2.1E-44 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 Gene3D G3DSA:3.40.50.300 283 530 3.5E-48 T 28-03-2018 AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 SMART SM00382 344 512 1.9E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 SMART SM00382 26 228 4.7E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21125 34e341989df1b3247002fd8d9b717c95 530 SUPERFAMILY SSF52540 6 237 2.99E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21500 d688a13ca41601c67dfe21faa40293f9 239 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 231 6.8E-72 T 28-03-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AM348_RS21500 d688a13ca41601c67dfe21faa40293f9 239 Pfam PF04973 Nicotinamide mononucleotide transporter 23 226 1.4E-50 T 28-03-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 AM348_RS16560 fc8863e0dc411c65f39c196cd68566c9 230 Pfam PF00563 EAL domain 10 210 8.0E-9 T 28-03-2018 IPR001633 EAL domain AM348_RS16560 fc8863e0dc411c65f39c196cd68566c9 230 Gene3D G3DSA:3.20.20.450 1 225 1.2E-11 T 28-03-2018 IPR001633 EAL domain AM348_RS16560 fc8863e0dc411c65f39c196cd68566c9 230 SUPERFAMILY SSF141868 6 222 1.57E-17 T 28-03-2018 IPR001633 EAL domain AM348_RS13285 65bdf5d2574920cb4a52b09b1a7cc128 244 Pfam PF08241 Methyltransferase domain 47 141 1.3E-22 T 28-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM348_RS13285 65bdf5d2574920cb4a52b09b1a7cc128 244 Gene3D G3DSA:3.40.50.150 26 242 3.6E-43 T 28-03-2018 AM348_RS13285 65bdf5d2574920cb4a52b09b1a7cc128 244 SUPERFAMILY SSF53335 17 243 2.92E-40 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS23170 4795323c5ccce64bc66ec1154cbdbf25 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 219 53.501 T 28-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM348_RS23170 4795323c5ccce64bc66ec1154cbdbf25 231 Pfam PF06508 Queuosine biosynthesis protein QueC 3 213 2.2E-84 T 28-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM348_RS23170 4795323c5ccce64bc66ec1154cbdbf25 231 PIRSF PIRSF006293 1 226 3.1E-87 T 28-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM348_RS23170 4795323c5ccce64bc66ec1154cbdbf25 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 206 5.5E-87 T 28-03-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 AM348_RS23170 4795323c5ccce64bc66ec1154cbdbf25 231 Gene3D G3DSA:3.40.50.620 1 231 6.0E-56 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS23170 4795323c5ccce64bc66ec1154cbdbf25 231 SUPERFAMILY SSF52402 1 221 8.82E-71 T 28-03-2018 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 SUPERFAMILY SSF51703 1 481 3.06E-200 T 28-03-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 TIGRFAM TIGR01503 MthylAspMut_E: methylaspartate mutase, E subunit 3 481 6.8E-253 T 28-03-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 Hamap MF_01923 Glutamate mutase epsilon subunit [glmE]. 2 481 54.699 T 28-03-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 Gene3D G3DSA:3.20.20.240 1 416 1.3E-111 T 28-03-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 PIRSF PIRSF001495 1 481 2.2E-242 T 28-03-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 Gene3D G3DSA:3.90.970.10 417 481 4.8E-28 T 28-03-2018 IPR014714 Glutamate mutase E subunit, C-terminal domain GO:0016866|GO:0019670|GO:0031419 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS21605 6d326f46f59397710da1d1d207ebf90f 481 Pfam PF06368 Methylaspartate mutase E chain (MutE) 43 481 6.1E-216 T 28-03-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 156 9.0E-70 T 28-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 SUPERFAMILY SSF51230 81 156 1.13E-25 T 28-03-2018 IPR011053 Single hybrid motif AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 112 129 - T 28-03-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 Gene3D G3DSA:2.40.50.100 4 156 6.0E-22 T 28-03-2018 AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 Pfam PF00364 Biotin-requiring enzyme 83 155 1.5E-24 T 28-03-2018 IPR000089 Biotin/lipoyl attachment AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 102 116 2.8E-18 T 28-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 117 130 2.8E-18 T 28-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM348_RS07680 16fed785771d7db415ee5fa72afcb391 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 98 2.8E-18 T 28-03-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 AM348_RS00280 d89ac29a76e42d336e8ab86bfe3ca983 514 PIRSF PIRSF006446 356 514 2.1E-34 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS00280 d89ac29a76e42d336e8ab86bfe3ca983 514 PIRSF PIRSF006446 1 332 2.0E-118 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS00280 d89ac29a76e42d336e8ab86bfe3ca983 514 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 2.0E-174 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS07230 89349cf8959a623eb9bdadefb2bd6c55 496 SUPERFAMILY SSF51690 184 494 4.12E-35 T 28-03-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 AM348_RS07230 89349cf8959a623eb9bdadefb2bd6c55 496 PIRSF PIRSF005943 1 496 1.1E-167 T 28-03-2018 IPR016471 Nicotinamide phosphoribosyl transferase Reactome: R-HSA-1368108|Reactome: R-HSA-197264 AM348_RS07230 89349cf8959a623eb9bdadefb2bd6c55 496 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 185 461 3.9E-45 T 28-03-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 AM348_RS07230 89349cf8959a623eb9bdadefb2bd6c55 496 Gene3D G3DSA:3.20.140.10 1 471 1.3E-88 T 28-03-2018 AM348_RS21180 8e035f20bb6952d33db664a9cb13764a 240 Gene3D G3DSA:3.40.50.300 1 240 1.1E-76 T 28-03-2018 AM348_RS21180 8e035f20bb6952d33db664a9cb13764a 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS21180 8e035f20bb6952d33db664a9cb13764a 240 Pfam PF00005 ABC transporter 17 165 2.8E-37 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21180 8e035f20bb6952d33db664a9cb13764a 240 SUPERFAMILY SSF52540 1 235 3.16E-80 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21180 8e035f20bb6952d33db664a9cb13764a 240 PIRSF PIRSF039085 1 240 4.4E-109 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS21180 8e035f20bb6952d33db664a9cb13764a 240 SMART SM00382 26 213 1.7E-16 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 SUPERFAMILY SSF64288 63 240 7.22E-36 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 SMART SM00866 96 236 4.2E-23 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 Pfam PF07702 UTRA domain 96 235 8.7E-28 T 28-03-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 4.8E-8 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 4.8E-8 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 6 241 2.5E-97 T 28-03-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 Gene3D G3DSA:3.40.1410.10 80 241 1.0E-30 T 28-03-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 SUPERFAMILY SSF46785 8 83 9.33E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 Gene3D G3DSA:1.10.10.10 1 76 2.1E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 2.2E-21 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS03260 6b571a507f7f069f1c0252eda4807d3d 241 SMART SM00345 17 75 4.3E-24 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 Pfam PF03466 LysR substrate binding domain 88 290 1.7E-25 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 SUPERFAMILY SSF53850 88 290 1.01E-27 T 28-03-2018 AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 Gene3D G3DSA:3.40.190.10 179 265 9.2E-9 T 28-03-2018 AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 Gene3D G3DSA:1.10.10.10 4 84 8.5E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 SUPERFAMILY SSF46785 6 88 1.74E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.4E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18280 fddbef8cd183ef60d3645cb2ed234d7b 310 Gene3D G3DSA:3.40.190.10 89 178 2.5E-7 T 28-03-2018 AM348_RS04200 46e8b9a65d66fbf56e7c5e8482f67385 295 Gene3D G3DSA:3.20.20.220 1 295 9.3E-101 T 28-03-2018 IPR029041 FAD-linked oxidoreductase-like AM348_RS04200 46e8b9a65d66fbf56e7c5e8482f67385 295 Pfam PF02219 Methylenetetrahydrofolate reductase 16 291 3.5E-108 T 28-03-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 AM348_RS04200 46e8b9a65d66fbf56e7c5e8482f67385 295 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 5.3E-107 T 28-03-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 AM348_RS04200 46e8b9a65d66fbf56e7c5e8482f67385 295 SUPERFAMILY SSF51730 22 294 6.47E-98 T 28-03-2018 IPR029041 FAD-linked oxidoreductase-like AM348_RS06535 d9c429383d8208f8fa7d0c62314c2760 104 Gene3D G3DSA:3.30.70.100 1 97 1.9E-17 T 28-03-2018 AM348_RS06535 d9c429383d8208f8fa7d0c62314c2760 104 SUPERFAMILY SSF54909 3 93 2.19E-19 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS06535 d9c429383d8208f8fa7d0c62314c2760 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 77 7.1E-12 T 28-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Gene3D G3DSA:3.40.50.620 119 230 5.4E-28 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 SUPERFAMILY SSF52374 3 298 2.49E-112 T 28-03-2018 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Gene3D G3DSA:1.10.10.350 366 471 5.3E-24 T 28-03-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.67 T 28-03-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Gene3D G3DSA:1.10.1160.10 232 314 1.1E-34 T 28-03-2018 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 SUPERFAMILY SSF48163 299 461 2.62E-43 T 28-03-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 5.9E-28 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 5.9E-28 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 5.9E-28 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 5.9E-28 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 5.9E-28 T 28-03-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 5.7E-121 T 28-03-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Gene3D G3DSA:3.40.50.620 3 118 1.9E-41 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 463 1.2E-207 T 28-03-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 AM348_RS12100 e66b80b3da9a05ef9a968e2f7246f563 471 Gene3D G3DSA:1.10.8.70 317 360 1.2E-10 T 28-03-2018 IPR020752 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 1 GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 145 1.1E-32 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 168 232 3.5E-14 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 SUPERFAMILY SSF49584 148 233 3.14E-20 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 Gene3D G3DSA:2.60.40.10 24 146 7.0E-29 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 SUPERFAMILY SSF49354 20 145 6.02E-32 T 28-03-2018 IPR008962 PapD-like AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 Gene3D G3DSA:2.60.40.10 148 239 7.9E-22 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 PRINTS PR00969 Pili chaperone signature 163 178 1.5E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 PRINTS PR00969 Pili chaperone signature 101 118 1.5E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 PRINTS PR00969 Pili chaperone signature 25 34 1.5E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 PRINTS PR00969 Pili chaperone signature 71 92 1.5E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS23460 a7ae1ff8da0a3c252f1a979753a4b711 239 PRINTS PR00969 Pili chaperone signature 127 142 1.5E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS23545 60145ced066aa3004c423e208b0aa0bc 72 ProDom PD073772 MEMBRANE TRANSMEMBRANE YAIZ INNER ECS0430 GENOME 1 72 1.0E-29 T 28-03-2018 IPR020490 Uncharacterised protein family YaiZ AM348_RS23545 60145ced066aa3004c423e208b0aa0bc 72 Pfam PF10953 Protein of unknown function (DUF2754) 1 68 7.1E-44 T 28-03-2018 IPR020490 Uncharacterised protein family YaiZ AM348_RS05790 8d5584f5f0a32d67b9b477bfe6c72419 229 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 8.5E-25 T 28-03-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 AM348_RS05790 8d5584f5f0a32d67b9b477bfe6c72419 229 Gene3D G3DSA:3.40.1280.10 1 190 5.6E-49 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS05790 8d5584f5f0a32d67b9b477bfe6c72419 229 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 37.188 T 28-03-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 AM348_RS05790 8d5584f5f0a32d67b9b477bfe6c72419 229 SUPERFAMILY SSF75217 4 184 4.25E-49 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS05790 8d5584f5f0a32d67b9b477bfe6c72419 229 Pfam PF00588 SpoU rRNA Methylase family 20 159 3.2E-36 T 28-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM348_RS20875 ad01083f26d918531bc6daa400d050ad 234 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 35 202 6.5E-71 T 28-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AM348_RS20875 ad01083f26d918531bc6daa400d050ad 234 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 234 97.739 T 28-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AM348_RS20875 ad01083f26d918531bc6daa400d050ad 234 SUPERFAMILY SSF55729 2 229 2.01E-93 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS20875 ad01083f26d918531bc6daa400d050ad 234 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 32 218 3.5E-88 T 28-03-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 AM348_RS08060 1aadc4f477a700386eed2f1cb91e460b 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.765 T 28-03-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AM348_RS08060 1aadc4f477a700386eed2f1cb91e460b 209 Gene3D G3DSA:3.40.50.150 1 209 9.8E-58 T 28-03-2018 AM348_RS08060 1aadc4f477a700386eed2f1cb91e460b 209 PIRSF PIRSF005461 1 209 4.9E-81 T 28-03-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 AM348_RS08060 1aadc4f477a700386eed2f1cb91e460b 209 Pfam PF01728 FtsJ-like methyltransferase 31 206 1.1E-56 T 28-03-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 AM348_RS08060 1aadc4f477a700386eed2f1cb91e460b 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 7.5E-94 T 28-03-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 KEGG: 00564+2.1.1.16 AM348_RS08060 1aadc4f477a700386eed2f1cb91e460b 209 SUPERFAMILY SSF53335 31 208 2.27E-43 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS07600 05765f8d42454ab62270a6c7f6a4fa22 367 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 174 360 1.3E-26 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS07600 05765f8d42454ab62270a6c7f6a4fa22 367 Gene3D G3DSA:1.10.3720.10 34 365 6.4E-33 T 28-03-2018 AM348_RS07600 05765f8d42454ab62270a6c7f6a4fa22 367 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 156 252 6.2E-20 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS07600 05765f8d42454ab62270a6c7f6a4fa22 367 SUPERFAMILY SSF161098 154 346 3.53E-35 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS14940 f3e5138643338a75b570352fd14e0527 185 SUPERFAMILY SSF52317 1 178 1.9E-41 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS14940 f3e5138643338a75b570352fd14e0527 185 Gene3D G3DSA:3.40.50.880 1 185 9.8E-37 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS14940 f3e5138643338a75b570352fd14e0527 185 Pfam PF01965 DJ-1/PfpI family 2 164 3.8E-32 T 28-03-2018 IPR002818 DJ-1/PfpI AM348_RS06365 3c76347b07e66c3edef0278bcfe567db 309 Gene3D G3DSA:3.40.1190.20 1 309 5.9E-59 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS06365 3c76347b07e66c3edef0278bcfe567db 309 Pfam PF00294 pfkB family carbohydrate kinase 3 304 1.8E-73 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS06365 3c76347b07e66c3edef0278bcfe567db 309 SUPERFAMILY SSF53613 2 303 1.34E-73 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS06365 3c76347b07e66c3edef0278bcfe567db 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 258 271 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS23415 82ce55609d62512d5320b58da1a3d625 457 Pfam PF00324 Amino acid permease 15 451 1.5E-107 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS23415 82ce55609d62512d5320b58da1a3d625 457 PIRSF PIRSF006060 1 455 1.7E-77 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS23415 82ce55609d62512d5320b58da1a3d625 457 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS04725 a420919c9a4ffeb65135b21b13b66e3f 181 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 28-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM348_RS04725 a420919c9a4ffeb65135b21b13b66e3f 181 Pfam PF12724 Flavodoxin domain 4 152 1.1E-50 T 28-03-2018 IPR026816 Flavodoxin domain AM348_RS04725 a420919c9a4ffeb65135b21b13b66e3f 181 SUPERFAMILY SSF52218 2 173 6.37E-31 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS04725 a420919c9a4ffeb65135b21b13b66e3f 181 Gene3D G3DSA:3.40.50.360 2 174 5.3E-21 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 Pfam PF00107 Zinc-binding dehydrogenase 173 299 9.7E-25 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 28-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 Gene3D G3DSA:3.40.50.720 148 326 1.5E-31 T 28-03-2018 AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 SMART SM00829 10 310 8.0E-4 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 132 6.9E-33 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 Gene3D G3DSA:3.90.180.10 1 147 6.2E-46 T 28-03-2018 AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 SUPERFAMILY SSF50129 3 172 5.17E-50 T 28-03-2018 IPR011032 GroES-like AM348_RS01940 a24091e5b21e29efabef2841b22a7d64 340 SUPERFAMILY SSF51735 139 304 2.75E-35 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03735 e0c23bf08e1303d36ac952a6b33e252a 265 Pfam PF03609 PTS system sorbose-specific iic component 6 237 3.0E-73 T 28-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM348_RS03735 e0c23bf08e1303d36ac952a6b33e252a 265 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 264 5.5E-129 T 28-03-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 Pfam PF00672 HAMP domain 180 232 1.1E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 Gene3D G3DSA:3.20.20.450 410 657 5.3E-85 T 28-03-2018 IPR001633 EAL domain AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 SUPERFAMILY SSF141868 413 659 1.44E-76 T 28-03-2018 IPR001633 EAL domain AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 Gene3D G3DSA:3.30.70.270 242 409 1.8E-19 T 28-03-2018 AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 Pfam PF00990 Diguanylate cyclase, GGDEF domain 247 394 1.1E-9 T 28-03-2018 IPR000160 GGDEF domain AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 SMART SM00052 408 653 4.6E-111 T 28-03-2018 IPR001633 EAL domain AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 SMART SM00267 231 398 5.7E-26 T 28-03-2018 IPR000160 GGDEF domain AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 Pfam PF00563 EAL domain 414 648 8.1E-64 T 28-03-2018 IPR001633 EAL domain AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 SUPERFAMILY SSF55073 249 400 4.24E-15 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS06340 eea49806144fe1df7236c2f223bf259b 668 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 36 155 3.8E-51 T 28-03-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 AM348_RS16805 63688bbd37b5f0a503bfe2935debb78a 88 Pfam PF03891 Domain of unknown function (DUF333) 38 83 1.6E-15 T 28-03-2018 IPR005590 Protein of unknown function DUF333 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 SUPERFAMILY SSF46785 5 87 3.86E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 1.7E-16 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 Gene3D G3DSA:3.40.190.10 182 266 1.5E-8 T 28-03-2018 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 Gene3D G3DSA:3.40.190.10 94 181 8.8E-4 T 28-03-2018 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 SUPERFAMILY SSF53850 95 298 1.03E-21 T 28-03-2018 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 Gene3D G3DSA:1.10.10.10 1 86 1.2E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 Pfam PF03466 LysR substrate binding domain 96 293 1.0E-21 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.0E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.0E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13145 3c32ac956fba6ac4f67dd2157c42f79b 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.0E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS07515 834b08ec54b751897fd2bc21b298c974 374 Pfam PF02481 DNA recombination-mediator protein A 67 274 3.5E-72 T 28-03-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AM348_RS07515 834b08ec54b751897fd2bc21b298c974 374 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 65 283 1.8E-85 T 28-03-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 AM348_RS07515 834b08ec54b751897fd2bc21b298c974 374 SUPERFAMILY SSF102405 77 283 1.98E-40 T 28-03-2018 AM348_RS07515 834b08ec54b751897fd2bc21b298c974 374 Gene3D G3DSA:1.10.10.10 274 362 8.5E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07515 834b08ec54b751897fd2bc21b298c974 374 Gene3D G3DSA:3.40.50.450 108 251 2.4E-33 T 28-03-2018 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 Gene3D G3DSA:3.30.1330.60 220 348 4.5E-26 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 Pfam PF00691 OmpA family 233 322 3.8E-15 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 SUPERFAMILY SSF103088 221 344 1.07E-24 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01021 OMPA domain signature 266 281 3.6E-12 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01021 OMPA domain signature 234 256 3.6E-12 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01021 OMPA domain signature 281 297 3.6E-12 T 28-03-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 SUPERFAMILY SSF56925 22 204 2.12E-33 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 Gene3D G3DSA:2.40.160.20 10 219 5.3E-41 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 189 203 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 251 270 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 118 134 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 323 336 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 222 237 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 290 309 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 PRINTS PR01022 Outer membrane protein A signature 175 189 1.1E-25 T 28-03-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 AM348_RS16895 c9d1f172587b5bff9b74a49b097d3936 348 Pfam PF01389 OmpA-like transmembrane domain 24 204 7.0E-47 T 28-03-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 AM348_RS18325 96a9ff8351285c15f72cad7db5850bfd 322 Gene3D G3DSA:3.40.50.1100 120 322 2.5E-50 T 28-03-2018 AM348_RS18325 96a9ff8351285c15f72cad7db5850bfd 322 Gene3D G3DSA:3.40.50.1100 1 119 5.3E-24 T 28-03-2018 AM348_RS18325 96a9ff8351285c15f72cad7db5850bfd 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 308 1.1E-76 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS18325 96a9ff8351285c15f72cad7db5850bfd 322 SUPERFAMILY SSF53686 8 317 2.49E-96 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS12515 cfeb5d7aec1a485c13df265aeab08970 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 86 1.2E-10 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS12515 cfeb5d7aec1a485c13df265aeab08970 214 Pfam PF14834 Glutathione S-transferase, C-terminal domain 95 211 1.6E-66 T 28-03-2018 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 AM348_RS12515 cfeb5d7aec1a485c13df265aeab08970 214 Gene3D G3DSA:3.40.30.10 1 103 1.8E-22 T 28-03-2018 AM348_RS12515 cfeb5d7aec1a485c13df265aeab08970 214 Gene3D G3DSA:1.20.1050.10 104 200 1.9E-14 T 28-03-2018 AM348_RS12515 cfeb5d7aec1a485c13df265aeab08970 214 SUPERFAMILY SSF52833 14 88 1.06E-15 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS12515 cfeb5d7aec1a485c13df265aeab08970 214 SUPERFAMILY SSF47616 91 207 6.52E-10 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 48 372 2.0E-167 T 28-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 Pfam PF08402 TOBE domain 292 372 1.1E-7 T 28-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 SMART SM00382 42 225 1.8E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 Gene3D G3DSA:3.40.50.300 14 272 3.2E-74 T 28-03-2018 AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 Pfam PF00005 ABC transporter 35 174 1.1E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 SUPERFAMILY SSF52540 17 258 5.18E-88 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19420 e40e599b09741c4ca5c8e2a6793d1cad 378 SUPERFAMILY SSF50331 250 364 1.02E-7 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS23385 3f6dbf29caf0c5df67f08ba973f0febc 200 PIRSF PIRSF000239 1 198 1.3E-58 T 28-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS23385 3f6dbf29caf0c5df67f08ba973f0febc 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 1.8E-11 T 28-03-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS23385 3f6dbf29caf0c5df67f08ba973f0febc 200 Gene3D G3DSA:3.40.30.10 3 161 5.7E-39 T 28-03-2018 AM348_RS23385 3f6dbf29caf0c5df67f08ba973f0febc 200 SUPERFAMILY SSF52833 1 193 1.36E-64 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS23385 3f6dbf29caf0c5df67f08ba973f0febc 200 Gene3D G3DSA:3.30.1020.10 162 198 5.9E-14 T 28-03-2018 AM348_RS23385 3f6dbf29caf0c5df67f08ba973f0febc 200 Pfam PF00578 AhpC/TSA family 5 139 8.3E-34 T 28-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 Gene3D G3DSA:3.40.50.740 109 195 1.4E-13 T 28-03-2018 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 SUPERFAMILY SSF53706 36 195 2.22E-56 T 28-03-2018 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 SMART SM00926 43 104 1.5E-22 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 104 4.8E-20 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 Pfam PF00384 Molybdopterin oxidoreductase 107 140 1.2E-6 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS17375 8794612c5f42e5e7645681161d936c68 195 Gene3D G3DSA:2.20.25.90 37 108 2.1E-20 T 28-03-2018 AM348_RS09770 cfeafc248e66fd03e43e6d8bdac37790 187 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 26 2.4E-8 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09770 cfeafc248e66fd03e43e6d8bdac37790 187 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 25 1.6E-7 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09770 cfeafc248e66fd03e43e6d8bdac37790 187 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09770 cfeafc248e66fd03e43e6d8bdac37790 187 PIRSF PIRSF004525 1 187 3.6E-59 T 28-03-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted AM348_RS00365 5b2cb90b510f73a5b0cfa335dd6b3bcc 482 SUPERFAMILY SSF141868 221 467 1.31E-64 T 28-03-2018 IPR001633 EAL domain AM348_RS00365 5b2cb90b510f73a5b0cfa335dd6b3bcc 482 SMART SM00052 215 460 3.2E-61 T 28-03-2018 IPR001633 EAL domain AM348_RS00365 5b2cb90b510f73a5b0cfa335dd6b3bcc 482 Pfam PF00563 EAL domain 222 455 1.7E-53 T 28-03-2018 IPR001633 EAL domain AM348_RS00365 5b2cb90b510f73a5b0cfa335dd6b3bcc 482 Gene3D G3DSA:3.20.20.450 217 473 7.6E-64 T 28-03-2018 IPR001633 EAL domain AM348_RS21095 eb89eb49ca46001b732db31f87a66a7e 249 Gene3D G3DSA:3.40.50.720 1 249 5.2E-77 T 28-03-2018 AM348_RS21095 eb89eb49ca46001b732db31f87a66a7e 249 Pfam PF00899 ThiF family 12 244 6.7E-63 T 28-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM348_RS21095 eb89eb49ca46001b732db31f87a66a7e 249 SUPERFAMILY SSF69572 3 248 7.85E-87 T 28-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM348_RS21095 eb89eb49ca46001b732db31f87a66a7e 249 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 8 247 1.2E-132 T 28-03-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 Gene3D G3DSA:1.10.10.10 8 63 6.1E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 SUPERFAMILY SSF54909 74 157 4.29E-22 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 SUPERFAMILY SSF46785 12 70 4.01E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 2.8E-21 T 28-03-2018 AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 1.2E-24 T 28-03-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 28-03-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 SMART SM00344 12 121 3.6E-55 T 28-03-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 Gene3D G3DSA:3.30.70.920 64 158 2.0E-27 T 28-03-2018 AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS20850 bea9bb00dab424e8c87ceec721a586ac 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 28-03-2018 IPR000485 AsnC-type HTH domain GO:0043565 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 SMART SM00882 15 253 2.0E-46 T 28-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 SUPERFAMILY SSF100950 284 523 6.09E-68 T 28-03-2018 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 SUPERFAMILY SSF100950 15 264 1.81E-78 T 28-03-2018 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 Gene3D G3DSA:3.40.1080.10 283 531 5.3E-54 T 28-03-2018 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 Gene3D G3DSA:3.40.1080.10 2 276 2.5E-63 T 28-03-2018 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 PIRSF PIRSF000858 11 529 1.7E-204 T 28-03-2018 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 Reactome: R-HSA-77108 AM348_RS18735 8e20a6d9b322b7c23041722d3c4b9b1a 531 Pfam PF01144 Coenzyme A transferase 16 252 3.3E-53 T 28-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS03510 0c052bc102bda2e5fa629f84f8dd1933 326 Pfam PF01548 Transposase 8 154 4.3E-27 T 28-03-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 AM348_RS03510 0c052bc102bda2e5fa629f84f8dd1933 326 Gene3D G3DSA:1.10.150.20 204 305 0.0011 T 28-03-2018 AM348_RS03510 0c052bc102bda2e5fa629f84f8dd1933 326 Pfam PF02371 Transposase IS116/IS110/IS902 family 196 280 3.4E-26 T 28-03-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 AM348_RS03510 0c052bc102bda2e5fa629f84f8dd1933 326 Gene3D G3DSA:1.10.150.20 122 203 0.034 T 28-03-2018 AM348_RS00150 a38324c3015621735f0c16440890ce2c 702 Gene3D G3DSA:2.40.170.20 175 702 7.5E-89 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS00150 a38324c3015621735f0c16440890ce2c 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 162 4.6E-24 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS00150 a38324c3015621735f0c16440890ce2c 702 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 58 702 1.7E-138 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS00150 a38324c3015621735f0c16440890ce2c 702 SUPERFAMILY SSF56935 29 702 6.41E-149 T 28-03-2018 AM348_RS00150 a38324c3015621735f0c16440890ce2c 702 Pfam PF00593 TonB dependent receptor 249 701 1.4E-65 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS00150 a38324c3015621735f0c16440890ce2c 702 Gene3D G3DSA:2.170.130.10 27 169 6.2E-29 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS00705 936ec80acf4e613056722e4c2c5cee1f 382 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 1 380 2.1E-187 T 28-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS00705 936ec80acf4e613056722e4c2c5cee1f 382 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 6 382 43.351 T 28-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS00705 936ec80acf4e613056722e4c2c5cee1f 382 SUPERFAMILY SSF53756 9 361 9.42E-28 T 28-03-2018 AM348_RS00705 936ec80acf4e613056722e4c2c5cee1f 382 Gene3D G3DSA:3.40.50.2000 185 367 1.6E-13 T 28-03-2018 AM348_RS00705 936ec80acf4e613056722e4c2c5cee1f 382 Pfam PF02684 Lipid-A-disaccharide synthetase 9 377 2.9E-154 T 28-03-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS00705 936ec80acf4e613056722e4c2c5cee1f 382 Gene3D G3DSA:3.40.50.2000 1 184 2.8E-4 T 28-03-2018 AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 8.7E-31 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 8.7E-31 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 8.7E-31 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 8.7E-31 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 8.7E-31 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 8.7E-31 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.6E-6 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.6E-6 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.6E-6 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 8.9E-51 T 28-03-2018 AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 Gene3D G3DSA:3.40.50.720 38 252 4.7E-56 T 28-03-2018 AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 Gene3D G3DSA:3.40.50.720 1 37 2.1E-5 T 28-03-2018 AM348_RS06395 dd72e5ef82f1a7ce222c3687fc75a8c5 252 SUPERFAMILY SSF51735 4 251 4.06E-67 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS12490 936c8564ce48f5fd75693a1a8ccf6474 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS12490 936c8564ce48f5fd75693a1a8ccf6474 257 SUPERFAMILY SSF52540 6 251 6.86E-75 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12490 936c8564ce48f5fd75693a1a8ccf6474 257 PIRSF PIRSF039085 2 257 5.1E-122 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS12490 936c8564ce48f5fd75693a1a8ccf6474 257 SMART SM00382 30 229 1.5E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS12490 936c8564ce48f5fd75693a1a8ccf6474 257 Gene3D G3DSA:3.40.50.300 1 256 8.3E-72 T 28-03-2018 AM348_RS12490 936c8564ce48f5fd75693a1a8ccf6474 257 Pfam PF00005 ABC transporter 21 181 1.7E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS08360 56bc079f8ed2d503aec4615d3fdc4586 233 PIRSF PIRSF006232 1 230 6.6E-33 T 28-03-2018 IPR012093 Pirin Reactome: R-HSA-8935690 AM348_RS08360 56bc079f8ed2d503aec4615d3fdc4586 233 Gene3D G3DSA:2.60.120.10 134 233 3.0E-21 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS08360 56bc079f8ed2d503aec4615d3fdc4586 233 Gene3D G3DSA:2.60.120.10 12 133 4.3E-23 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS08360 56bc079f8ed2d503aec4615d3fdc4586 233 Pfam PF02678 Pirin 5 119 2.1E-24 T 28-03-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 AM348_RS08360 56bc079f8ed2d503aec4615d3fdc4586 233 SUPERFAMILY SSF51182 1 231 7.62E-46 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS02360 bd177c3d30bcfbaf2eae2ffdd0b26100 500 SUPERFAMILY SSF52540 13 369 4.88E-55 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02360 bd177c3d30bcfbaf2eae2ffdd0b26100 500 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 500 1.3E-248 T 28-03-2018 IPR033186 Helicase HerA-like C-terminal AM348_RS02360 bd177c3d30bcfbaf2eae2ffdd0b26100 500 Gene3D G3DSA:3.40.50.300 14 432 1.2E-29 T 28-03-2018 AM348_RS17945 31e83746d8ccc1cf9f3d79e6feccdc3d 120 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 120 30.162 T 28-03-2018 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 AM348_RS17945 31e83746d8ccc1cf9f3d79e6feccdc3d 120 SUPERFAMILY SSF103481 7 106 6.28E-16 T 28-03-2018 AM348_RS17945 31e83746d8ccc1cf9f3d79e6feccdc3d 120 Pfam PF00893 Small Multidrug Resistance protein 3 92 1.1E-24 T 28-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM348_RS04560 b216ad8f0661162fa2e653041bae0214 145 SUPERFAMILY SSF69500 1 144 1.31E-56 T 28-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain AM348_RS04560 b216ad8f0661162fa2e653041bae0214 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 4.5E-75 T 28-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AM348_RS04560 b216ad8f0661162fa2e653041bae0214 145 Gene3D G3DSA:3.50.80.10 1 145 2.7E-55 T 28-03-2018 IPR023509 D-Tyr tRNAtyr deacylase-like domain AM348_RS04560 b216ad8f0661162fa2e653041bae0214 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 35.205 T 28-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AM348_RS04560 b216ad8f0661162fa2e653041bae0214 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 3.9E-54 T 28-03-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 3.8E-229 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 PIRSF PIRSF016049 1 391 1.2E-180 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 Gene3D G3DSA:3.20.20.150 174 391 1.5E-45 T 28-03-2018 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 Gene3D G3DSA:3.20.20.150 1 173 2.6E-65 T 28-03-2018 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 Pfam PF06628 Catalase-related immune-responsive 152 205 7.7E-5 T 28-03-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 393 222.482 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 SUPERFAMILY SSF51658 1 133 2.33E-78 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 SUPERFAMILY SSF51658 163 383 2.33E-78 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS06495 89b3b15b2c166a2ece34996703466ccf 393 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 3.2E-164 T 28-03-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 2 391 48.998 T 28-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 PIRSF PIRSF001413 1 397 1.2E-171 T 28-03-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 SUPERFAMILY SSF53686 5 390 6.81E-142 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 80 94 - T 28-03-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 Gene3D G3DSA:3.40.50.1100 197 397 4.5E-36 T 28-03-2018 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 Gene3D G3DSA:3.40.50.1100 9 196 1.2E-44 T 28-03-2018 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 8 389 7.0E-188 T 28-03-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 AM348_RS16405 a870fa0f3f691f9a5c4852a4ccbb22c0 397 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 52 375 8.0E-49 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 Gene3D G3DSA:1.10.10.10 1 96 2.2E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 5.7E-10 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 5.7E-10 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 5.7E-10 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 SUPERFAMILY SSF46785 11 98 1.59E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 SMART SM00418 16 95 3.0E-25 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS10670 cb9e351ce7778b8d8148c79b4ad0a94e 99 Pfam PF01022 Bacterial regulatory protein, arsR family 23 70 8.2E-16 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS13055 937a650c96baf8f70b8c0c49a930af1d 237 SMART SM00014 94 210 1.9E-19 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS13055 937a650c96baf8f70b8c0c49a930af1d 237 SUPERFAMILY SSF48317 4 222 9.48E-31 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS13055 937a650c96baf8f70b8c0c49a930af1d 237 Gene3D G3DSA:1.20.144.10 16 221 6.4E-11 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS13055 937a650c96baf8f70b8c0c49a930af1d 237 Pfam PF01569 PAP2 superfamily 135 210 9.4E-9 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS13055 937a650c96baf8f70b8c0c49a930af1d 237 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 1 233 40.802 T 28-03-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 Gene3D G3DSA:1.10.1200.20 1 91 9.3E-34 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 Pfam PF01320 Colicin immunity protein / pyocin immunity protein 5 90 2.1E-31 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 46 62 2.3E-19 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 69 90 2.3E-19 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 5 23 2.3E-19 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 SUPERFAMILY SSF47345 4 91 2.22E-29 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS21760 5ad6ada0ab0fa85dca9a93760ffc9806 93 ProDom PD007225 IMMUNITY COLICIN BACTERIOCIN PLASMID PROTEIN/PYOCIN ORFU3 ORFU1 PYOCIN 3D-STRUCTURE GENES 10 90 7.0E-19 T 28-03-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 AM348_RS06095 bafe0c228b42ca7b8e642f311d346557 107 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 2.0E-41 T 28-03-2018 IPR011223 Uncharacterised conserved protein UCP028770 AM348_RS06095 bafe0c228b42ca7b8e642f311d346557 107 PIRSF PIRSF028770 1 107 1.0E-59 T 28-03-2018 IPR011223 Uncharacterised conserved protein UCP028770 AM348_RS02770 83ad168338a1366b25a510654115f80f 254 Pfam PF01925 Sulfite exporter TauE/SafE 15 249 2.9E-40 T 28-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM348_RS13510 32b8df039ebbb4e088a064b416c157a5 337 SUPERFAMILY SSF51735 298 335 4.18E-60 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13510 32b8df039ebbb4e088a064b416c157a5 337 SUPERFAMILY SSF51735 1 270 4.18E-60 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13510 32b8df039ebbb4e088a064b416c157a5 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 234 1.6E-26 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS13510 32b8df039ebbb4e088a064b416c157a5 337 Gene3D G3DSA:3.90.25.10 181 335 1.0E-25 T 28-03-2018 AM348_RS13510 32b8df039ebbb4e088a064b416c157a5 337 Gene3D G3DSA:3.40.50.720 1 180 8.0E-27 T 28-03-2018 AM348_RS04355 4870a60daaf3ab304bc4f9e4eab7125e 249 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 29 247 2.5E-91 T 28-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM348_RS04355 4870a60daaf3ab304bc4f9e4eab7125e 249 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 1 249 51.289 T 28-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM348_RS04355 4870a60daaf3ab304bc4f9e4eab7125e 249 PIRSF PIRSF001273 1 249 6.4E-102 T 28-03-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM348_RS04355 4870a60daaf3ab304bc4f9e4eab7125e 249 TIGRFAM TIGR00672 cdh: CDP-diacylglycerol diphosphatase 1 249 1.3E-145 T 28-03-2018 IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 AM348_RS04355 4870a60daaf3ab304bc4f9e4eab7125e 249 SUPERFAMILY SSF54197 29 247 2.32E-89 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS04355 4870a60daaf3ab304bc4f9e4eab7125e 249 Gene3D G3DSA:3.30.428.30 27 247 1.5E-91 T 28-03-2018 AM348_RS12000 0eb598ec74438087163fc27017f28d66 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 1.7E-49 T 28-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM348_RS12000 0eb598ec74438087163fc27017f28d66 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 4.5E-51 T 28-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM348_RS12000 0eb598ec74438087163fc27017f28d66 169 SUPERFAMILY SSF51261 12 167 2.09E-56 T 28-03-2018 IPR011055 Duplicated hybrid motif AM348_RS12000 0eb598ec74438087163fc27017f28d66 169 Gene3D G3DSA:2.70.70.10 9 169 2.8E-59 T 28-03-2018 AM348_RS12000 0eb598ec74438087163fc27017f28d66 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 28-03-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 Gene3D G3DSA:3.40.50.620 1 128 1.4E-31 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 323 335 - T 28-03-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 Pfam PF00875 DNA photolyase 5 168 1.1E-45 T 28-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 Gene3D G3DSA:1.25.40.80 132 290 2.1E-35 T 28-03-2018 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 Gene3D G3DSA:1.10.579.10 293 471 7.7E-75 T 28-03-2018 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 Pfam PF03441 FAD binding domain of DNA photolyase 273 467 2.6E-84 T 28-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 343 362 - T 28-03-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 SUPERFAMILY SSF48173 204 470 5.23E-105 T 28-03-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 PRINTS PR00147 DNA photolyase signature 323 339 1.8E-32 T 28-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 PRINTS PR00147 DNA photolyase signature 382 396 1.8E-32 T 28-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 PRINTS PR00147 DNA photolyase signature 343 361 1.8E-32 T 28-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 PRINTS PR00147 DNA photolyase signature 143 159 1.8E-32 T 28-03-2018 IPR002081 Cryptochrome/DNA photolyase class 1 AM348_RS21825 cc1f7edcdd926662a1723cd19a79e52a 472 SUPERFAMILY SSF52425 3 198 5.36E-52 T 28-03-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 AM348_RS01395 d061b87a9bec16e0c23921b5fcbbde35 219 Pfam PF00849 RNA pseudouridylate synthase 22 169 1.1E-29 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS01395 d061b87a9bec16e0c23921b5fcbbde35 219 SUPERFAMILY SSF55120 8 216 2.08E-62 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS01395 d061b87a9bec16e0c23921b5fcbbde35 219 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 7 217 1.3E-58 T 28-03-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS01395 d061b87a9bec16e0c23921b5fcbbde35 219 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 28-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS01395 d061b87a9bec16e0c23921b5fcbbde35 219 Gene3D G3DSA:3.30.2350.10 14 218 5.4E-59 T 28-03-2018 AM348_RS08805 5ea3cb1a595dadf4c5159057dab14136 210 SUPERFAMILY SSF55811 3 207 1.03E-52 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS08805 5ea3cb1a595dadf4c5159057dab14136 210 Gene3D G3DSA:3.90.79.10 1 209 1.5E-45 T 28-03-2018 AM348_RS08805 5ea3cb1a595dadf4c5159057dab14136 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 199 4.5E-82 T 28-03-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 AM348_RS08805 5ea3cb1a595dadf4c5159057dab14136 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS08805 5ea3cb1a595dadf4c5159057dab14136 210 Pfam PF00293 NUDIX domain 59 179 1.8E-13 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 636 37.038 T 28-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 SUPERFAMILY SSF53067 187 382 7.78E-68 T 28-03-2018 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 Gene3D G3DSA:1.20.1270.10 532 618 7.4E-21 T 28-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 Gene3D G3DSA:3.30.420.40 1 196 4.9E-81 T 28-03-2018 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 198 208 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 469 485 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 138 158 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 54 62 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 365 385 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 334 350 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 PRINTS PR00301 70kDa heat shock protein signature 388 407 1.7E-80 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 Gene3D G3DSA:3.30.420.40 197 366 2.2E-45 T 28-03-2018 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 SUPERFAMILY SSF53067 4 183 3.13E-65 T 28-03-2018 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 Pfam PF00012 Hsp70 protein 4 602 1.1E-267 T 28-03-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 SUPERFAMILY SSF100934 507 602 6.54E-29 T 28-03-2018 IPR029048 Heat shock protein 70kD, C-terminal domain AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 SUPERFAMILY SSF100920 384 539 5.36E-61 T 28-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 28-03-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 Gene3D G3DSA:2.60.34.10 390 531 3.7E-65 T 28-03-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 AM348_RS01620 f6f9a3d67c878a43d2d47b254195eadf 640 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 6.2E-292 T 28-03-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613 AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Gene3D G3DSA:2.160.10.10 322 440 4.3E-33 T 28-03-2018 AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Gene3D G3DSA:3.90.550.10 3 244 2.9E-52 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Gene3D G3DSA:2.160.10.10 245 321 2.5E-18 T 28-03-2018 AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Pfam PF12804 MobA-like NTP transferase domain 8 123 1.2E-20 T 28-03-2018 IPR025877 MobA-like NTP transferase AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 6.9E-7 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 1.2E-7 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 318 350 0.003 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 353 382 0.003 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 SUPERFAMILY SSF53448 5 252 3.55E-68 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 1.7E-205 T 28-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 42.997 T 28-03-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 SUPERFAMILY SSF51161 255 439 6.8E-53 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS05295 8d7efce1a09316781e17d44a6716f379 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 Gene3D G3DSA:3.40.50.2300 168 330 4.2E-43 T 28-03-2018 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 SMART SM00354 1 71 3.9E-30 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.5E-7 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.5E-7 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 SUPERFAMILY SSF47413 1 56 7.13E-17 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 Pfam PF13377 Periplasmic binding protein-like domain 170 329 5.7E-34 T 28-03-2018 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 SUPERFAMILY SSF53822 61 332 1.1E-79 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 Gene3D G3DSA:1.10.260.40 2 57 6.3E-21 T 28-03-2018 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.4E-21 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS00310 520eb210c435227b9b9ab5bdb21bc4d6 334 Gene3D G3DSA:3.40.50.2300 58 167 2.6E-22 T 28-03-2018 AM348_RS03000 af3c6d0f564bd648d4adf535531c0249 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 6.8E-32 T 28-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM348_RS03000 af3c6d0f564bd648d4adf535531c0249 105 SUPERFAMILY SSF103481 5 103 2.09E-20 T 28-03-2018 AM348_RS20225 b52684d41645820f7625773d49d5dfaa 207 SUPERFAMILY SSF52833 36 198 7.26E-39 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS20225 b52684d41645820f7625773d49d5dfaa 207 Pfam PF01323 DSBA-like thioredoxin domain 57 196 9.7E-23 T 28-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM348_RS20225 b52684d41645820f7625773d49d5dfaa 207 Gene3D G3DSA:3.40.30.10 35 207 6.7E-38 T 28-03-2018 AM348_RS20225 b52684d41645820f7625773d49d5dfaa 207 ProSitePatterns PS00194 Thioredoxin family active site. 58 76 - T 28-03-2018 IPR017937 Thioredoxin, conserved site GO:0045454 AM348_RS14090 5084c9d844b41a6b6ca594fe8b074b4b 210 Pfam PF02570 Precorrin-8X methylmutase 10 204 1.6E-66 T 28-03-2018 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 AM348_RS14090 5084c9d844b41a6b6ca594fe8b074b4b 210 SUPERFAMILY SSF63965 9 207 1.06E-63 T 28-03-2018 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 AM348_RS14090 5084c9d844b41a6b6ca594fe8b074b4b 210 Gene3D G3DSA:3.40.50.10230 3 210 6.5E-75 T 28-03-2018 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 AM348_RS20015 6149abf17e393d6d0f10905027423c40 350 Pfam PF00581 Rhodanese-like domain 138 233 1.8E-13 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS20015 6149abf17e393d6d0f10905027423c40 350 Gene3D G3DSA:3.40.250.10 130 243 9.4E-28 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS20015 6149abf17e393d6d0f10905027423c40 350 Pfam PF12368 Rhodanase C-terminal 246 307 4.0E-19 T 28-03-2018 IPR022111 Rhodanase, C-terminal AM348_RS20015 6149abf17e393d6d0f10905027423c40 350 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 276 39.668 T 28-03-2018 IPR020936 Uncharacterised protein family UPF0176 AM348_RS20015 6149abf17e393d6d0f10905027423c40 350 SUPERFAMILY SSF52821 128 269 5.89E-31 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS20015 6149abf17e393d6d0f10905027423c40 350 SMART SM00450 136 237 5.1E-25 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS16605 fd2e59124a9cdeb79299d29993c2ef2e 222 Gene3D G3DSA:1.20.1170.10 4 222 5.1E-5 T 28-03-2018 AM348_RS16605 fd2e59124a9cdeb79299d29993c2ef2e 222 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 3.2E-92 T 28-03-2018 IPR014319 Phage shock protein, PspA AM348_RS16605 fd2e59124a9cdeb79299d29993c2ef2e 222 Pfam PF04012 PspA/IM30 family 2 216 7.5E-49 T 28-03-2018 IPR007157 PspA/IM30 AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 Pfam PF02355 Protein export membrane protein 118 301 2.9E-69 T 28-03-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 SUPERFAMILY SSF82866 83 303 1.05E-37 T 28-03-2018 AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 1.3E-30 T 28-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 PRINTS PR01755 Bacterial translocase SecF protein signature 208 226 1.3E-30 T 28-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 PRINTS PR01755 Bacterial translocase SecF protein signature 160 174 1.3E-30 T 28-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 PRINTS PR01755 Bacterial translocase SecF protein signature 240 255 1.3E-30 T 28-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 Pfam PF07549 SecD/SecF GG Motif 40 66 2.3E-11 T 28-03-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 Gene3D G3DSA:1.20.1640.10 109 313 2.5E-30 T 28-03-2018 AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 292 9.2E-86 T 28-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 303 27.594 T 28-03-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 AM348_RS23355 f61a7b782bc8c325e9c3a149765e63b7 323 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 126 289 1.4E-53 T 28-03-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial AM348_RS12955 5ce20b5f4a0f2adb3fd6b566c28528cc 349 SUPERFAMILY SSF48452 218 327 7.82E-19 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS12955 5ce20b5f4a0f2adb3fd6b566c28528cc 349 Pfam PF03918 Cytochrome C biogenesis protein 7 130 4.5E-51 T 28-03-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family AM348_RS12955 5ce20b5f4a0f2adb3fd6b566c28528cc 349 Gene3D G3DSA:1.25.40.10 248 346 8.4E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS12955 5ce20b5f4a0f2adb3fd6b566c28528cc 349 Gene3D G3DSA:1.25.40.10 23 247 1.7E-6 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS12955 5ce20b5f4a0f2adb3fd6b566c28528cc 349 Pfam PF14559 Tetratricopeptide repeat 236 274 1.8E-6 T 28-03-2018 AM348_RS15430 538a131348aadced9f4b5236d1177770 231 SUPERFAMILY SSF53067 108 217 6.21E-30 T 28-03-2018 AM348_RS15430 538a131348aadced9f4b5236d1177770 231 Pfam PF00814 Glycoprotease family 28 129 9.3E-29 T 28-03-2018 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7053|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 AM348_RS15430 538a131348aadced9f4b5236d1177770 231 Gene3D G3DSA:3.30.420.40 1 139 2.5E-40 T 28-03-2018 AM348_RS15430 538a131348aadced9f4b5236d1177770 231 Gene3D G3DSA:3.30.420.40 140 231 0.0031 T 28-03-2018 AM348_RS15430 538a131348aadced9f4b5236d1177770 231 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 219 1.7E-71 T 28-03-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 AM348_RS15430 538a131348aadced9f4b5236d1177770 231 SUPERFAMILY SSF53067 3 105 3.5E-31 T 28-03-2018 AM348_RS16635 b5559c5badc4a4afbcfd39a16e13334b 465 PIRSF PIRSF019381 1 465 5.7E-217 T 28-03-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AM348_RS16635 b5559c5badc4a4afbcfd39a16e13334b 465 Pfam PF04317 YcjX-like family, DUF463 20 464 2.5E-183 T 28-03-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein AM348_RS16635 b5559c5badc4a4afbcfd39a16e13334b 465 Gene3D G3DSA:3.40.50.300 14 394 9.4E-16 T 28-03-2018 AM348_RS13780 61c6bba9a7208502f28394217545ad03 464 SUPERFAMILY SSF51126 44 349 1.09E-22 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS13780 61c6bba9a7208502f28394217545ad03 464 Gene3D G3DSA:2.160.20.10 277 439 1.4E-6 T 28-03-2018 IPR012334 Pectin lyase fold AM348_RS13780 61c6bba9a7208502f28394217545ad03 464 Gene3D G3DSA:2.160.20.10 39 276 1.5E-13 T 28-03-2018 IPR012334 Pectin lyase fold AM348_RS13780 61c6bba9a7208502f28394217545ad03 464 TIGRFAM TIGR04004 WcaM: colanic acid biosynthesis protein WcaM 3 460 3.3E-279 T 28-03-2018 IPR023882 Colanic acid biosynthesis WcaM AM348_RS11535 223ea522e1b79151904661f3ea064118 111 SUPERFAMILY SSF54292 4 109 4.14E-35 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 92 2.0E-15 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 28-03-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 7.0E-62 T 28-03-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 PRINTS PR00355 Adrenodoxin signature 42 52 6.0E-11 T 28-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 PRINTS PR00355 Adrenodoxin signature 60 74 6.0E-11 T 28-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 PRINTS PR00355 Adrenodoxin signature 83 91 6.0E-11 T 28-03-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 AM348_RS11535 223ea522e1b79151904661f3ea064118 111 Gene3D G3DSA:3.10.20.30 8 111 3.1E-34 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS09595 73d840a7b88057ad620cabffc7e1b737 515 SUPERFAMILY SSF52210 349 507 7.33E-8 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS09595 73d840a7b88057ad620cabffc7e1b737 515 Pfam PF00549 CoA-ligase 346 503 7.1E-43 T 28-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS09595 73d840a7b88057ad620cabffc7e1b737 515 Gene3D G3DSA:3.40.50.261 167 515 1.3E-35 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS09595 73d840a7b88057ad620cabffc7e1b737 515 Gene3D G3DSA:3.40.50.720 39 166 4.4E-6 T 28-03-2018 AM348_RS09595 73d840a7b88057ad620cabffc7e1b737 515 Pfam PF02629 CoA binding domain 189 283 1.9E-15 T 28-03-2018 IPR003781 CoA-binding GO:0048037 AM348_RS09595 73d840a7b88057ad620cabffc7e1b737 515 SUPERFAMILY SSF52210 180 288 2.09E-19 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS02700 86d4cfee6e14efe762c5c83a83ad0010 126 Gene3D G3DSA:1.10.10.10 1 126 1.6E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02700 86d4cfee6e14efe762c5c83a83ad0010 126 SUPERFAMILY SSF46785 14 118 3.36E-32 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02700 86d4cfee6e14efe762c5c83a83ad0010 126 Pfam PF01638 HxlR-like helix-turn-helix 29 116 3.8E-32 T 28-03-2018 IPR002577 Helix-turn-helix, HxlR type AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 100 260 2.1E-60 T 28-03-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 Gene3D G3DSA:3.10.650.10 197 269 6.4E-28 T 28-03-2018 AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 Gene3D G3DSA:2.40.430.10 119 196 5.7E-30 T 28-03-2018 AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 Gene3D G3DSA:1.20.58.370 4 95 3.0E-32 T 28-03-2018 IPR035277 Maltose transport system permease protein MalF N-terminal domain AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 SUPERFAMILY SSF161098 261 503 2.22E-61 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 297 501 3.7E-22 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 SUPERFAMILY SSF160964 15 260 2.22E-89 T 28-03-2018 AM348_RS03625 dd313f56b9fce2f5bcdbdd8f42652238 514 Gene3D G3DSA:1.10.3720.10 270 514 5.2E-43 T 28-03-2018 AM348_RS16455 23b55cafceaa1165085e1feea43a282e 348 Gene3D G3DSA:3.90.226.10 57 305 1.7E-31 T 28-03-2018 AM348_RS16455 23b55cafceaa1165085e1feea43a282e 348 SUPERFAMILY SSF52096 239 298 4.33E-32 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS16455 23b55cafceaa1165085e1feea43a282e 348 SUPERFAMILY SSF52096 97 208 4.33E-32 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS16455 23b55cafceaa1165085e1feea43a282e 348 Pfam PF01343 Peptidase family S49 160 309 3.9E-48 T 28-03-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 AM348_RS16455 23b55cafceaa1165085e1feea43a282e 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 6.7E-60 T 28-03-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 PRINTS PR00050 Cold shock protein signature 25 34 2.8E-16 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 PRINTS PR00050 Cold shock protein signature 4 19 2.8E-16 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 PRINTS PR00050 Cold shock protein signature 40 58 2.8E-16 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 SMART SM00357 3 67 4.2E-29 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 SUPERFAMILY SSF50249 1 65 5.63E-23 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 28-03-2018 IPR019844 Cold-shock conserved site AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 4.8E-29 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 Gene3D G3DSA:2.40.50.140 1 67 2.7E-26 T 28-03-2018 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 PIRSF PIRSF002599 1 74 5.7E-23 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS13580 557c01c68756b831e3bc42e9cf83eb87 74 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 67 5.3E-43 T 28-03-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 AM348_RS20615 fe69a9a177a744263d5aa9d6f8915453 324 SMART SM00062 33 254 1.9E-32 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS20615 fe69a9a177a744263d5aa9d6f8915453 324 Pfam PF09084 NMT1/THI5 like 72 188 8.7E-11 T 28-03-2018 IPR015168 SsuA/THI5-like AM348_RS20615 fe69a9a177a744263d5aa9d6f8915453 324 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 34 314 3.4E-82 T 28-03-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 AM348_RS20615 fe69a9a177a744263d5aa9d6f8915453 324 Gene3D G3DSA:3.40.190.10 134 321 3.9E-31 T 28-03-2018 AM348_RS20615 fe69a9a177a744263d5aa9d6f8915453 324 SUPERFAMILY SSF53850 31 263 1.99E-48 T 28-03-2018 AM348_RS20615 fe69a9a177a744263d5aa9d6f8915453 324 Gene3D G3DSA:3.40.190.10 29 133 1.0E-16 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 SUPERFAMILY SSF81597 246 290 2.35E-13 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 9.7E-19 T 28-03-2018 IPR015246 Formate dehydrogenase, transmembrane AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 SUPERFAMILY SSF54862 26 258 3.14E-71 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Gene3D G3DSA:1.20.5.480 256 291 4.3E-22 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Gene3D G3DSA:3.30.70.20 153 255 4.2E-23 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 290 5.3E-145 T 28-03-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Gene3D G3DSA:3.30.70.20 9 42 0.0045 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Gene3D G3DSA:3.30.70.20 114 152 1.6E-16 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 PIRSF PIRSF036298 1 294 1.1E-162 T 28-03-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Gene3D G3DSA:3.30.70.20 43 113 1.1E-20 T 28-03-2018 AM348_RS17385 bec6d12c1544e6523718057b5b67a714 294 Pfam PF13247 4Fe-4S dicluster domain 92 188 1.3E-25 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 SUPERFAMILY SSF52151 190 307 3.92E-82 T 28-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 SUPERFAMILY SSF52151 4 122 3.92E-82 T 28-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 1.3E-134 T 28-03-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 Pfam PF00698 Acyl transferase domain 6 281 2.0E-38 T 28-03-2018 IPR014043 Acyl transferase AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 Gene3D G3DSA:3.40.366.10 185 309 4.7E-31 T 28-03-2018 AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 307 7.4E-42 T 28-03-2018 IPR020801 Polyketide synthase, acyl transferase domain AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 Gene3D G3DSA:3.40.366.10 1 184 1.5E-52 T 28-03-2018 AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 SUPERFAMILY SSF55048 128 197 1.44E-17 T 28-03-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 AM348_RS19825 a2325efcbf50d04549f9cb8eeb075447 309 PIRSF PIRSF000446 1 309 1.1E-144 T 28-03-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 AM348_RS20185 d4e53e803626d46b5d714e4d9155e0b0 304 SUPERFAMILY SSF103481 48 146 1.24E-10 T 28-03-2018 AM348_RS20185 d4e53e803626d46b5d714e4d9155e0b0 304 Pfam PF00892 EamA-like transporter family 17 142 3.6E-14 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS20185 d4e53e803626d46b5d714e4d9155e0b0 304 Pfam PF00892 EamA-like transporter family 155 284 1.4E-11 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS20185 d4e53e803626d46b5d714e4d9155e0b0 304 SUPERFAMILY SSF103481 208 285 1.7E-9 T 28-03-2018 AM348_RS23625 899a6651b7b4c1250fd2c09ad5155a44 692 Gene3D G3DSA:1.10.3720.10 425 687 9.2E-35 T 28-03-2018 AM348_RS23625 899a6651b7b4c1250fd2c09ad5155a44 692 Gene3D G3DSA:1.10.3720.10 140 407 4.5E-34 T 28-03-2018 AM348_RS23625 899a6651b7b4c1250fd2c09ad5155a44 692 SUPERFAMILY SSF161098 434 674 7.48E-44 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS23625 899a6651b7b4c1250fd2c09ad5155a44 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 500 677 1.7E-11 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS23625 899a6651b7b4c1250fd2c09ad5155a44 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 210 402 4.5E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS23625 899a6651b7b4c1250fd2c09ad5155a44 692 SUPERFAMILY SSF161098 140 405 5.45E-41 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS07225 c4f80f54e4d774ea0af1083f3567a023 286 Gene3D G3DSA:3.40.50.2020 8 142 4.3E-11 T 28-03-2018 AM348_RS07225 c4f80f54e4d774ea0af1083f3567a023 286 SUPERFAMILY SSF53271 76 127 5.1E-6 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS07225 c4f80f54e4d774ea0af1083f3567a023 286 SUPERFAMILY SSF53271 152 270 5.64E-23 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS07225 c4f80f54e4d774ea0af1083f3567a023 286 Gene3D G3DSA:3.40.50.2020 143 278 6.9E-21 T 28-03-2018 AM348_RS07225 c4f80f54e4d774ea0af1083f3567a023 286 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 11 280 3.3E-36 T 28-03-2018 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 AM348_RS07225 c4f80f54e4d774ea0af1083f3567a023 286 Pfam PF00156 Phosphoribosyl transferase domain 144 241 6.8E-10 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 Gene3D G3DSA:1.10.1040.10 283 490 1.0E-66 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 SUPERFAMILY SSF48179 284 487 5.78E-68 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 Gene3D G3DSA:3.40.50.720 1 282 1.8E-105 T 28-03-2018 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 218 464 4.7E-97 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 PRINTS PR00084 Mannitol dehydrogenase signature 180 193 9.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 PRINTS PR00084 Mannitol dehydrogenase signature 219 232 9.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 PRINTS PR00084 Mannitol dehydrogenase signature 26 36 9.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 PRINTS PR00084 Mannitol dehydrogenase signature 249 264 9.6E-20 T 28-03-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 25 189 4.8E-51 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS02090 7d6bb063a5bd793298cac17e41037827 491 SUPERFAMILY SSF51735 9 282 5.51E-95 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 SUPERFAMILY SSF49493 113 167 3.66E-21 T 28-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 SUPERFAMILY SSF49493 211 261 3.66E-21 T 28-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Gene3D G3DSA:2.60.260.20 253 363 7.0E-27 T 28-03-2018 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 SUPERFAMILY SSF57938 132 209 5.62E-24 T 28-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Pfam PF01556 DnaJ C terminal domain 119 331 1.8E-46 T 28-03-2018 IPR002939 Chaperone DnaJ, C-terminal AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Gene3D G3DSA:2.10.230.10 142 201 3.2E-21 T 28-03-2018 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 347 8.9E-143 T 28-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Gene3D G3DSA:1.10.287.110 1 116 3.0E-37 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 SUPERFAMILY SSF46565 1 107 8.11E-36 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Pfam PF00684 DnaJ central domain 145 205 8.8E-16 T 28-03-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 28-03-2018 IPR018253 DnaJ domain, conserved site AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Pfam PF00226 DnaJ domain 5 67 5.4E-28 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 PRINTS PR00625 DnaJ domain signature 25 40 3.0E-33 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 PRINTS PR00625 DnaJ domain signature 7 25 3.0E-33 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 PRINTS PR00625 DnaJ domain signature 42 62 3.0E-33 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 PRINTS PR00625 DnaJ domain signature 62 81 3.0E-33 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 371 42.713 T 28-03-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 Gene3D G3DSA:2.60.260.20 202 252 7.8E-12 T 28-03-2018 AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 SMART SM00271 4 62 3.0E-30 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01615 29c50abac116253c1c3c4856447d2b80 377 SUPERFAMILY SSF49493 257 342 3.4E-21 T 28-03-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 AM348_RS22440 9b0573a59edd82b0c3d16a091eff444d 206 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 8 201 4.4E-49 T 28-03-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein AM348_RS22440 9b0573a59edd82b0c3d16a091eff444d 206 SUPERFAMILY SSF141318 41 184 1.7E-13 T 28-03-2018 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein AM348_RS22440 9b0573a59edd82b0c3d16a091eff444d 206 Gene3D G3DSA:2.40.50.140 36 203 2.6E-4 T 28-03-2018 AM348_RS12940 ba4ad1e0f9c44a32316e8b4ff94a5e54 159 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 31.79 T 28-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AM348_RS12940 ba4ad1e0f9c44a32316e8b4ff94a5e54 159 SUPERFAMILY SSF82093 30 143 1.44E-40 T 28-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AM348_RS12940 ba4ad1e0f9c44a32316e8b4ff94a5e54 159 Pfam PF03100 CcmE 4 137 4.2E-46 T 28-03-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 AM348_RS12940 ba4ad1e0f9c44a32316e8b4ff94a5e54 159 Gene3D G3DSA:2.40.50.140 27 131 1.5E-33 T 28-03-2018 AM348_RS19945 4d5fe24154c2cf19152a879bd71fb648 140 SUPERFAMILY SSF140566 1 113 3.92E-16 T 28-03-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 AM348_RS19945 4d5fe24154c2cf19152a879bd71fb648 140 Gene3D G3DSA:1.20.58.300 1 114 9.9E-20 T 28-03-2018 AM348_RS19945 4d5fe24154c2cf19152a879bd71fb648 140 Pfam PF05130 FlgN protein 1 129 1.5E-19 T 28-03-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.545 T 28-03-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 Gene3D G3DSA:3.40.630.10 296 375 2.2E-4 T 28-03-2018 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 Gene3D G3DSA:3.40.630.10 1 280 1.6E-63 T 28-03-2018 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 3.9E-44 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 SUPERFAMILY SSF55031 179 286 8.37E-30 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 1.2E-175 T 28-03-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 SUPERFAMILY SSF53187 292 373 1.15E-65 T 28-03-2018 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 SUPERFAMILY SSF53187 5 178 1.15E-65 T 28-03-2018 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 136 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 Pfam PF07687 Peptidase dimerisation domain 175 282 1.5E-24 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS11775 f5c6a260d128926edd609cc3e3699807 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 Gene3D G3DSA:1.10.760.10 21 232 2.8E-50 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 Pfam PF02167 Cytochrome C1 family 32 259 1.3E-67 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 Gene3D G3DSA:1.20.5.100 235 259 4.3E-4 T 28-03-2018 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 50 69 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 97 117 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 213 232 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 30 49 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 180 191 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 130 154 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 PRINTS PR00603 Cytochrome C1 signature 232 247 4.1E-36 T 28-03-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 AM348_RS20315 d11fdc247cf2f8637085339c018c7215 267 SUPERFAMILY SSF46626 26 230 9.58E-42 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS18980 cfc1cc1adb975875396d18541bb5dc80 276 TIGRFAM TIGR00552 nadE: NAD+ synthetase 17 275 9.4E-85 T 28-03-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 AM348_RS18980 cfc1cc1adb975875396d18541bb5dc80 276 SUPERFAMILY SSF52402 3 273 2.35E-85 T 28-03-2018 AM348_RS18980 cfc1cc1adb975875396d18541bb5dc80 276 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 17 268 31.48 T 28-03-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 AM348_RS18980 cfc1cc1adb975875396d18541bb5dc80 276 Gene3D G3DSA:3.40.50.620 2 274 6.8E-58 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS18980 cfc1cc1adb975875396d18541bb5dc80 276 Pfam PF02540 NAD synthase 23 265 8.1E-79 T 28-03-2018 IPR022310 NAD/GMP synthase AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 28-03-2018 IPR027486 Ribosomal protein S10 domain AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 28-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 28-03-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 28-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 28-03-2018 IPR027486 Ribosomal protein S10 domain AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 28-03-2018 IPR027486 Ribosomal protein S10 domain AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 28-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 28-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 28-03-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07335 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 3 102 1.4E-35 T 28-03-2018 IPR027486 Ribosomal protein S10 domain AM348_RS15930 1e8100f1bb600c3374293d742b9cb8c5 302 SUPERFAMILY SSF53448 9 289 7.66E-63 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS15930 1e8100f1bb600c3374293d742b9cb8c5 302 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 275 2.7E-116 T 28-03-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AM348_RS15930 1e8100f1bb600c3374293d742b9cb8c5 302 Gene3D G3DSA:3.90.550.10 1 302 1.5E-59 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS15930 1e8100f1bb600c3374293d742b9cb8c5 302 Pfam PF00483 Nucleotidyl transferase 10 276 4.5E-26 T 28-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM348_RS05435 185e9c5ab68a302ba7448eadd0e67fdc 408 Pfam PF12566 Protein of unknown function (DUF3748) 63 179 2.6E-54 T 28-03-2018 IPR022223 Protein of unknown function DUF3748 AM348_RS05435 185e9c5ab68a302ba7448eadd0e67fdc 408 SUPERFAMILY SSF69304 18 147 1.31E-19 T 28-03-2018 AM348_RS05435 185e9c5ab68a302ba7448eadd0e67fdc 408 SUPERFAMILY SSF69304 307 404 1.31E-19 T 28-03-2018 AM348_RS05435 185e9c5ab68a302ba7448eadd0e67fdc 408 Gene3D G3DSA:2.140.10.30 197 403 1.1E-15 T 28-03-2018 AM348_RS05435 185e9c5ab68a302ba7448eadd0e67fdc 408 Gene3D G3DSA:2.140.10.30 2 161 3.6E-8 T 28-03-2018 AM348_RS05435 185e9c5ab68a302ba7448eadd0e67fdc 408 Pfam PF07676 WD40-like Beta Propeller Repeat 377 403 0.026 T 28-03-2018 IPR011659 WD40-like Beta Propeller AM348_RS11030 f3c4153aa9c3133d8d02a3780a014086 114 Gene3D G3DSA:3.30.1450.10 35 107 1.2E-9 T 28-03-2018 AM348_RS11030 f3c4153aa9c3133d8d02a3780a014086 114 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 33.701 T 28-03-2018 IPR026592 Outer membrane protein assembly factor BamE AM348_RS11030 f3c4153aa9c3133d8d02a3780a014086 114 Pfam PF04355 SmpA / OmlA family 35 104 3.5E-27 T 28-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AM348_RS21020 ef1d774d6e8e5dfa65fa3ff645020333 208 SUPERFAMILY SSF47616 83 203 1.53E-28 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS21020 ef1d774d6e8e5dfa65fa3ff645020333 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 82 1.9E-14 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS21020 ef1d774d6e8e5dfa65fa3ff645020333 208 Pfam PF13410 Glutathione S-transferase, C-terminal domain 128 191 3.5E-10 T 28-03-2018 AM348_RS21020 ef1d774d6e8e5dfa65fa3ff645020333 208 SUPERFAMILY SSF52833 1 85 2.84E-23 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS21020 ef1d774d6e8e5dfa65fa3ff645020333 208 Gene3D G3DSA:1.20.1050.10 100 203 1.1E-26 T 28-03-2018 AM348_RS21020 ef1d774d6e8e5dfa65fa3ff645020333 208 Gene3D G3DSA:3.40.30.10 1 99 2.9E-27 T 28-03-2018 AM348_RS12715 eac2e58cff309c6e75b133af36e4ba43 300 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 295 64.607 T 28-03-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 AM348_RS12715 eac2e58cff309c6e75b133af36e4ba43 300 SUPERFAMILY SSF88713 4 38 5.84E-22 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS12715 eac2e58cff309c6e75b133af36e4ba43 300 SUPERFAMILY SSF88713 82 280 5.84E-22 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS12715 eac2e58cff309c6e75b133af36e4ba43 300 Pfam PF01522 Polysaccharide deacetylase 15 163 4.1E-9 T 28-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AM348_RS12715 eac2e58cff309c6e75b133af36e4ba43 300 Gene3D G3DSA:3.20.20.370 3 275 2.1E-21 T 28-03-2018 AM348_RS13820 722399e5ccefeb10d7dcf441f0329e88 260 Pfam PF00535 Glycosyl transferase family 2 7 166 1.2E-18 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS13820 722399e5ccefeb10d7dcf441f0329e88 260 SUPERFAMILY SSF53448 3 212 4.13E-48 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13820 722399e5ccefeb10d7dcf441f0329e88 260 Gene3D G3DSA:3.90.550.10 3 241 6.1E-41 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS15805 966d197c8d75ce90e01dd5f15ba0a046 231 SUPERFAMILY SSF110857 47 160 3.4E-10 T 28-03-2018 IPR013024 Gamma-glutamyl cyclotransferase-like AM348_RS15805 966d197c8d75ce90e01dd5f15ba0a046 231 Gene3D G3DSA:3.10.490.10 32 220 3.6E-33 T 28-03-2018 AM348_RS15805 966d197c8d75ce90e01dd5f15ba0a046 231 Pfam PF04752 ChaC-like protein 47 215 1.0E-52 T 28-03-2018 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase GO:0003839|GO:0006751 Reactome: R-HSA-174403 AM348_RS05110 ecdb3beeeb2146081faf7e333fd2a07a 87 SUPERFAMILY SSF55021 3 75 1.05E-11 T 28-03-2018 AM348_RS05110 ecdb3beeeb2146081faf7e333fd2a07a 87 Gene3D G3DSA:3.30.70.260 1 79 1.3E-7 T 28-03-2018 AM348_RS05110 ecdb3beeeb2146081faf7e333fd2a07a 87 Pfam PF13710 ACT domain 13 73 6.8E-27 T 28-03-2018 AM348_RS13995 cfe589d720bd7c5ed7cf950c2c9a2e00 370 SUPERFAMILY SSF56796 3 368 1.44E-103 T 28-03-2018 AM348_RS13995 cfe589d720bd7c5ed7cf950c2c9a2e00 370 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 154 182 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS13995 cfe589d720bd7c5ed7cf950c2c9a2e00 370 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 361 7.5E-104 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS13995 cfe589d720bd7c5ed7cf950c2c9a2e00 370 Gene3D G3DSA:1.20.1090.10 166 349 4.5E-54 T 28-03-2018 AM348_RS13995 cfe589d720bd7c5ed7cf950c2c9a2e00 370 Gene3D G3DSA:3.40.50.1970 1 163 3.2E-37 T 28-03-2018 AM348_RS08310 4e1afa952e8c4e620ef46ed831bf5456 329 Gene3D G3DSA:3.40.50.1100 139 327 3.3E-45 T 28-03-2018 AM348_RS08310 4e1afa952e8c4e620ef46ed831bf5456 329 SUPERFAMILY SSF53686 11 320 3.67E-94 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS08310 4e1afa952e8c4e620ef46ed831bf5456 329 Gene3D G3DSA:3.40.50.1100 36 138 5.9E-29 T 28-03-2018 AM348_RS08310 4e1afa952e8c4e620ef46ed831bf5456 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 312 1.2E-79 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS08310 4e1afa952e8c4e620ef46ed831bf5456 329 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 28 323 1.4E-115 T 28-03-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 AM348_RS08310 4e1afa952e8c4e620ef46ed831bf5456 329 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 28-03-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 AM348_RS07970 0339ab6bdc5543b234d9ef0a6ba0c640 270 SUPERFAMILY SSF52540 8 236 4.11E-63 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07970 0339ab6bdc5543b234d9ef0a6ba0c640 270 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS07970 0339ab6bdc5543b234d9ef0a6ba0c640 270 Pfam PF00005 ABC transporter 25 172 2.2E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS07970 0339ab6bdc5543b234d9ef0a6ba0c640 270 Gene3D G3DSA:3.40.50.300 5 251 1.1E-61 T 28-03-2018 AM348_RS07970 0339ab6bdc5543b234d9ef0a6ba0c640 270 SMART SM00382 33 229 1.1E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS08675 0c5b9a2e5073234e8636b2b22d65cc05 201 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 12 176 5.5E-76 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS08675 0c5b9a2e5073234e8636b2b22d65cc05 201 Pfam PF05683 Fumarase C-terminus 9 175 2.5E-39 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS08675 0c5b9a2e5073234e8636b2b22d65cc05 201 SUPERFAMILY SSF117457 3 174 2.75E-56 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS08675 0c5b9a2e5073234e8636b2b22d65cc05 201 Gene3D G3DSA:3.20.130.10 1 176 6.0E-61 T 28-03-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 321 5.0E-16 T 28-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 Gene3D G3DSA:3.40.1550.10 46 234 1.7E-37 T 28-03-2018 IPR028976 CheC-like domain AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 SUPERFAMILY SSF101801 249 323 1.7E-12 T 28-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 Gene3D G3DSA:2.30.330.10 239 329 1.1E-15 T 28-03-2018 IPR001543 Surface presentation of antigen (SpoA) AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 Pfam PF02154 Flagellar motor switch protein FliM 38 231 8.3E-80 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 2.9E-32 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 2.9E-32 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 2.9E-32 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 213 231 2.9E-32 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 SUPERFAMILY SSF103039 49 231 2.88E-18 T 28-03-2018 IPR028976 CheC-like domain AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 321 1.4E-117 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS14405 20f17b62bd3570e30ad175849b773c95 334 PIRSF PIRSF002888 2 331 2.2E-100 T 28-03-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 Gene3D G3DSA:3.30.870.10 2 167 1.5E-30 T 28-03-2018 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 SMART SM00155 285 312 14.0 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 SMART SM00155 108 135 4.8E-7 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 Gene3D G3DSA:3.30.870.10 196 363 3.2E-29 T 28-03-2018 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 SUPERFAMILY SSF56024 4 165 1.55E-40 T 28-03-2018 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 Hamap MF_01917 Cardiolipin synthase B [clsB]. 2 383 52.423 T 28-03-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 Pfam PF13091 PLD-like domain 214 335 5.1E-26 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 Pfam PF13091 PLD-like domain 26 157 3.7E-14 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS21290 0f5215424c2718ace4e947c0e4bbeb21 413 SUPERFAMILY SSF56024 175 357 1.17E-38 T 28-03-2018 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 SMART SM01134 72 233 1.4E-71 T 28-03-2018 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 Gene3D G3DSA:3.40.50.1360 64 239 4.3E-40 T 28-03-2018 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 Gene3D G3DSA:1.10.10.10 1 61 5.7E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 6.6E-13 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 6.6E-13 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 SUPERFAMILY SSF100950 73 233 1.76E-30 T 28-03-2018 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 Pfam PF00455 DeoR C terminal sensor domain 74 231 2.4E-55 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 SUPERFAMILY SSF46785 3 76 2.67E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 SMART SM00420 6 58 7.9E-27 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS06935 5905a29779643935f7d41d742cefd43d 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 2.2E-24 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 103 4.0E-19 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 Pfam PF00384 Molybdopterin oxidoreductase 107 155 1.4E-6 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 Gene3D G3DSA:2.20.25.90 37 108 7.6E-21 T 28-03-2018 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 28-03-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 Gene3D G3DSA:3.40.50.740 109 195 2.5E-13 T 28-03-2018 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 SUPERFAMILY SSF53706 35 195 8.38E-58 T 28-03-2018 AM348_RS04505 0870928c89958c3de9ad1b7675d4b98a 195 SMART SM00926 43 104 4.9E-22 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS09555 6c943b0760945cf210047d7843aec4c5 673 Pfam PF01522 Polysaccharide deacetylase 107 272 7.1E-30 T 28-03-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 AM348_RS09555 6c943b0760945cf210047d7843aec4c5 673 SUPERFAMILY SSF88713 68 198 2.03E-36 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS09555 6c943b0760945cf210047d7843aec4c5 673 SUPERFAMILY SSF88713 226 328 2.03E-36 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS09555 6c943b0760945cf210047d7843aec4c5 673 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 320 647 1.4E-151 T 28-03-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal AM348_RS09555 6c943b0760945cf210047d7843aec4c5 673 Gene3D G3DSA:3.20.20.370 71 492 1.3E-47 T 28-03-2018 AM348_RS09555 6c943b0760945cf210047d7843aec4c5 673 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 51 667 4.8E-276 T 28-03-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0042710 AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 SUPERFAMILY SSF51735 2 258 6.25E-64 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.2E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.2E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 2.2E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.2E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.2E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 Gene3D G3DSA:3.40.50.720 1 259 2.5E-53 T 28-03-2018 AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.6E-9 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.6E-9 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.6E-9 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS10465 c366a47d71cf74db1feffb6ef031a560 259 Pfam PF00106 short chain dehydrogenase 3 197 6.2E-49 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS21660 107f09143be9e6f1c3b65e374a5a7ebb 418 SUPERFAMILY SSF142764 6 415 1.83E-124 T 28-03-2018 AM348_RS21660 107f09143be9e6f1c3b65e374a5a7ebb 418 Gene3D G3DSA:3.40.50.10840 5 241 6.8E-77 T 28-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM348_RS21660 107f09143be9e6f1c3b65e374a5a7ebb 418 Pfam PF07005 Putative sugar-binding N-terminal domain 6 232 1.7E-70 T 28-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM348_RS21660 107f09143be9e6f1c3b65e374a5a7ebb 418 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 256 410 2.3E-37 T 28-03-2018 IPR031475 Putative nucleotide-binding C-terminal domain AM348_RS14260 927ae83be60fb76c5dd0254e467e352b 98 Pfam PF12840 Helix-turn-helix domain 5 69 3.1E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14260 927ae83be60fb76c5dd0254e467e352b 98 SUPERFAMILY SSF46785 2 93 1.29E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14260 927ae83be60fb76c5dd0254e467e352b 98 Gene3D G3DSA:1.10.10.10 1 96 1.0E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14260 927ae83be60fb76c5dd0254e467e352b 98 SMART SM00418 8 89 7.7E-8 T 28-03-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 SUPERFAMILY SSF55261 288 419 9.16E-47 T 28-03-2018 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 SUPERFAMILY SSF55681 108 287 2.49E-106 T 28-03-2018 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 SUPERFAMILY SSF55681 420 584 2.49E-106 T 28-03-2018 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 1.2E-26 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 1.2E-26 T 28-03-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 SUPERFAMILY SSF50249 1 105 3.62E-34 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.44 T 28-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 Gene3D G3DSA:3.30.930.10 131 586 3.5E-102 T 28-03-2018 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 Gene3D G3DSA:2.40.50.140 1 108 5.4E-27 T 28-03-2018 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 586 5.1E-277 T 28-03-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 7.9E-17 T 28-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 Pfam PF00152 tRNA synthetases class II (D, K and N) 118 558 1.2E-106 T 28-03-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS15115 d36218b5821f8f476d246131585cb0c3 590 Pfam PF02938 GAD domain 307 406 1.7E-31 T 28-03-2018 IPR029351 GAD domain Reactome: R-HSA-379726 AM348_RS01325 ea5b84e018143f0e6fe04e397702d5bc 392 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 17 391 1.7E-171 T 28-03-2018 IPR004750 Sugar efflux GO:0008643|GO:0015542|GO:0016021 AM348_RS01325 ea5b84e018143f0e6fe04e397702d5bc 392 SUPERFAMILY SSF103473 13 387 3.14E-45 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS01325 ea5b84e018143f0e6fe04e397702d5bc 392 Gene3D G3DSA:1.20.1250.20 210 390 2.4E-22 T 28-03-2018 AM348_RS01325 ea5b84e018143f0e6fe04e397702d5bc 392 Gene3D G3DSA:1.20.1250.20 11 201 4.3E-16 T 28-03-2018 AM348_RS01325 ea5b84e018143f0e6fe04e397702d5bc 392 Pfam PF07690 Major Facilitator Superfamily 19 344 1.0E-26 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS01175 424bd8a0b02e37507bafe22931952361 168 PIRSF PIRSF004572 1 168 1.9E-82 T 28-03-2018 IPR009502 Secretion monitor GO:0045182 AM348_RS01175 424bd8a0b02e37507bafe22931952361 168 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 168 8.0E-75 T 28-03-2018 IPR009502 Secretion monitor GO:0045182 AM348_RS01175 424bd8a0b02e37507bafe22931952361 168 Pfam PF06558 Secretion monitor precursor protein (SecM) 24 165 4.2E-55 T 28-03-2018 IPR009502 Secretion monitor GO:0045182 AM348_RS01175 424bd8a0b02e37507bafe22931952361 168 Hamap MF_01332 Secretion monitor [secM]. 1 168 40.858 T 28-03-2018 IPR009502 Secretion monitor GO:0045182 AM348_RS13550 422fc1bf8cf305c559a1e3c2b27f57e3 299 Pfam PF03956 Lysine exporter LysO 113 297 1.5E-56 T 28-03-2018 IPR005642 Lysine exporter LysO AM348_RS13550 422fc1bf8cf305c559a1e3c2b27f57e3 299 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 135 296 2.0E-72 T 28-03-2018 IPR005642 Lysine exporter LysO AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 5.7E-161 T 28-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 SMART SM00116 96 144 2.7E-11 T 28-03-2018 IPR000644 CBS domain AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 SMART SM00116 158 206 4.9E-7 T 28-03-2018 IPR000644 CBS domain AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 SUPERFAMILY SSF54631 94 203 3.16E-24 T 28-03-2018 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 Gene3D G3DSA:3.20.20.70 1 482 3.6E-114 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 PIRSF PIRSF000130 1 488 7.9E-196 T 28-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 84.657 T 28-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 2.0E-199 T 28-03-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 SUPERFAMILY SSF51412 217 477 9.55E-126 T 28-03-2018 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 SUPERFAMILY SSF51412 1 90 9.55E-126 T 28-03-2018 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 28-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 SMART SM01240 7 473 0.0 T 28-03-2018 AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 Pfam PF00571 CBS domain 153 202 0.0029 T 28-03-2018 IPR000644 CBS domain AM348_RS11635 431c0c342f399386d3f7c917a6995a5d 488 Pfam PF00571 CBS domain 95 140 3.1E-9 T 28-03-2018 IPR000644 CBS domain AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 32 266 7.8E-101 T 28-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 285 376 6.8E-24 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 Gene3D G3DSA:3.40.710.10 21 302 1.5E-52 T 28-03-2018 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 65 76 1.4E-18 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 164 1.4E-18 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 124 141 1.4E-18 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 SUPERFAMILY SSF56601 10 285 2.32E-84 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 Gene3D G3DSA:2.60.410.10 303 376 6.6E-19 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 SMART SM00936 285 376 1.4E-34 T 28-03-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS21015 99781bf390569f85c246a0d8b162d18b 400 SUPERFAMILY SSF69189 285 378 3.34E-25 T 28-03-2018 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 AM348_RS00480 1c83b610777d0e9d26f39a3e3a344d96 555 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 366 538 9.6E-10 T 28-03-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal AM348_RS00480 1c83b610777d0e9d26f39a3e3a344d96 555 Pfam PF04932 O-Antigen ligase 206 342 1.1E-13 T 28-03-2018 IPR007016 O-antigen ligase-related AM348_RS01305 b98003391286739189cf15d5675e9e50 201 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 2 200 44.691 T 28-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AM348_RS01305 b98003391286739189cf15d5675e9e50 201 SUPERFAMILY SSF52016 3 193 2.94E-61 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS01305 b98003391286739189cf15d5675e9e50 201 Pfam PF00694 Aconitase C-terminal domain 3 126 9.9E-40 T 28-03-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01305 b98003391286739189cf15d5675e9e50 201 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 3 189 2.4E-100 T 28-03-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 AM348_RS01305 b98003391286739189cf15d5675e9e50 201 Gene3D G3DSA:3.20.19.10 1 177 3.0E-51 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS13110 e5ceca51fb711157a57a856f3192ce95 393 Pfam PF07690 Major Facilitator Superfamily 21 356 1.6E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS13110 e5ceca51fb711157a57a856f3192ce95 393 SUPERFAMILY SSF103473 19 390 4.32E-48 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS13110 e5ceca51fb711157a57a856f3192ce95 393 Gene3D G3DSA:1.20.1250.20 17 195 5.6E-18 T 28-03-2018 AM348_RS13110 e5ceca51fb711157a57a856f3192ce95 393 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 19 392 7.9E-191 T 28-03-2018 IPR004750 Sugar efflux GO:0008643|GO:0015542|GO:0016021 AM348_RS13110 e5ceca51fb711157a57a856f3192ce95 393 Gene3D G3DSA:1.20.1250.20 212 392 3.3E-24 T 28-03-2018 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.5E-73 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.5E-73 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 244 261 1.5E-73 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 94 116 1.5E-73 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 148 170 1.5E-73 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00183 E.coli/Salmonella-type porin signature 273 292 1.5E-73 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 Pfam PF00267 Gram-negative porin 27 366 3.5E-151 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 SUPERFAMILY SSF56935 22 366 1.52E-80 T 28-03-2018 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 238 250 2.0E-19 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 318 335 2.0E-19 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 94 104 2.0E-19 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 2.0E-19 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 150 161 2.0E-19 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 318 334 - T 28-03-2018 IPR013793 Porin, Gram-negative type, conserved site AM348_RS12835 56b0ebacab0b4fedf31947b872348ca5 366 Gene3D G3DSA:2.40.160.10 10 366 3.5E-51 T 28-03-2018 AM348_RS23150 9c311925ec6ac3c336153c42296629a9 350 Gene3D G3DSA:3.40.50.1100 29 140 2.0E-22 T 28-03-2018 AM348_RS23150 9c311925ec6ac3c336153c42296629a9 350 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 314 2.6E-42 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS23150 9c311925ec6ac3c336153c42296629a9 350 Gene3D G3DSA:3.40.50.1100 141 329 6.7E-39 T 28-03-2018 AM348_RS23150 9c311925ec6ac3c336153c42296629a9 350 SUPERFAMILY SSF53686 15 332 5.11E-70 T 28-03-2018 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme AM348_RS15190 1e05115ab849f9c152e9c11dbba7a72a 603 Pfam PF00920 Dehydratase family 66 598 1.7E-158 T 28-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS15190 1e05115ab849f9c152e9c11dbba7a72a 603 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 28-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS15190 1e05115ab849f9c152e9c11dbba7a72a 603 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 602 0.0 T 28-03-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 AM348_RS15190 1e05115ab849f9c152e9c11dbba7a72a 603 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 505 516 - T 28-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS15190 1e05115ab849f9c152e9c11dbba7a72a 603 SUPERFAMILY SSF143975 1 418 4.71E-146 T 28-03-2018 AM348_RS15190 1e05115ab849f9c152e9c11dbba7a72a 603 SUPERFAMILY SSF52016 419 600 8.63E-58 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS14315 e9e643761fcc43d3a7009768ab4dca13 177 Pfam PF13884 Chaperone of endosialidase 43 93 5.2E-9 T 28-03-2018 IPR030392 Intramolecular chaperone auto-processing domain AM348_RS14315 e9e643761fcc43d3a7009768ab4dca13 177 Gene3D G3DSA:1.10.10.10 33 177 2.1E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23610 cb6c99e7c322f32bd722fdb7f17b24ce 513 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 506 1.0E-7 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23610 cb6c99e7c322f32bd722fdb7f17b24ce 513 Gene3D G3DSA:3.30.565.10 276 507 9.9E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23610 cb6c99e7c322f32bd722fdb7f17b24ce 513 SUPERFAMILY SSF55874 395 505 7.53E-19 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23610 cb6c99e7c322f32bd722fdb7f17b24ce 513 Pfam PF05231 MASE1 11 281 1.3E-43 T 28-03-2018 IPR007895 MASE1 AM348_RS23610 cb6c99e7c322f32bd722fdb7f17b24ce 513 SMART SM00387 419 508 1.1E-8 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23610 cb6c99e7c322f32bd722fdb7f17b24ce 513 Pfam PF07730 Histidine kinase 316 380 1.3E-13 T 28-03-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 AM348_RS17785 7d9ba789e7a4bbc65d4d957e8a34f48c 308 SMART SM00267 118 287 9.1E-51 T 28-03-2018 IPR000160 GGDEF domain AM348_RS17785 7d9ba789e7a4bbc65d4d957e8a34f48c 308 Pfam PF13682 Chemoreceptor zinc-binding domain 22 89 6.8E-7 T 28-03-2018 IPR025991 Chemoreceptor zinc-binding domain AM348_RS17785 7d9ba789e7a4bbc65d4d957e8a34f48c 308 Pfam PF00990 Diguanylate cyclase, GGDEF domain 130 283 2.8E-42 T 28-03-2018 IPR000160 GGDEF domain AM348_RS17785 7d9ba789e7a4bbc65d4d957e8a34f48c 308 SUPERFAMILY SSF55073 134 289 6.28E-40 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS17785 7d9ba789e7a4bbc65d4d957e8a34f48c 308 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 127 285 5.9E-38 T 28-03-2018 IPR000160 GGDEF domain AM348_RS17785 7d9ba789e7a4bbc65d4d957e8a34f48c 308 Gene3D G3DSA:3.30.70.270 126 300 2.6E-46 T 28-03-2018 AM348_RS21930 811c9751bfa3f223538d0adc0d1c5dc0 468 Pfam PF03573 outer membrane porin, OprD family 33 433 6.5E-25 T 28-03-2018 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 AM348_RS21930 811c9751bfa3f223538d0adc0d1c5dc0 468 Gene3D G3DSA:2.40.160.10 2 468 2.2E-96 T 28-03-2018 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 Pfam PF00245 Alkaline phosphatase 64 430 6.5E-131 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 Gene3D G3DSA:3.40.720.10 22 471 3.8E-130 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 SUPERFAMILY SSF53649 35 470 1.27E-139 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 ProSitePatterns PS00123 Alkaline phosphatase active site. 121 129 - T 28-03-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 PRINTS PR00113 Alkaline phosphatase signature 121 136 1.3E-49 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 PRINTS PR00113 Alkaline phosphatase signature 64 84 1.3E-49 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 PRINTS PR00113 Alkaline phosphatase signature 320 349 1.3E-49 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 PRINTS PR00113 Alkaline phosphatase signature 221 231 1.3E-49 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 PRINTS PR00113 Alkaline phosphatase signature 158 178 1.3E-49 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS23525 aa3ff7ac60df9484747d7930822f124d 471 SMART SM00098 65 471 2.7E-229 T 28-03-2018 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 AM348_RS16365 51df70c75af9de4fff38add806a9edef 133 Pfam PF03061 Thioesterase superfamily 26 97 9.2E-18 T 28-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM348_RS16365 51df70c75af9de4fff38add806a9edef 133 SUPERFAMILY SSF54637 8 132 3.2E-39 T 28-03-2018 IPR029069 HotDog domain AM348_RS16365 51df70c75af9de4fff38add806a9edef 133 Gene3D G3DSA:3.10.129.10 1 133 1.3E-34 T 28-03-2018 AM348_RS09875 3181f8792b6cf2c303c3920db60abb83 140 Gene3D G3DSA:3.40.1650.10 1 140 2.2E-45 T 28-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM348_RS09875 3181f8792b6cf2c303c3920db60abb83 140 Hamap MF_01662 L-fucose mutarotase [fucU]. 1 140 46.195 T 28-03-2018 IPR023751 L-fucose mutarotase GO:0016854|GO:0042354|GO:0042806 AM348_RS09875 3181f8792b6cf2c303c3920db60abb83 140 SUPERFAMILY SSF102546 1 139 9.55E-38 T 28-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM348_RS09875 3181f8792b6cf2c303c3920db60abb83 140 Pfam PF05025 RbsD / FucU transport protein family 3 139 1.1E-33 T 28-03-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM348_RS17425 7ed63c9542cb998fd419c47754ff8429 143 Gene3D G3DSA:3.30.300.20 2 143 1.9E-30 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS17425 7ed63c9542cb998fd419c47754ff8429 143 Pfam PF02566 OsmC-like protein 43 138 1.1E-18 T 28-03-2018 IPR003718 OsmC/Ohr family AM348_RS17425 7ed63c9542cb998fd419c47754ff8429 143 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 5 138 3.2E-61 T 28-03-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 AM348_RS17425 7ed63c9542cb998fd419c47754ff8429 143 SUPERFAMILY SSF82784 1 141 1.44E-41 T 28-03-2018 IPR003718 OsmC/Ohr family AM348_RS20020 d2b7c987b18da43de5c4147c821fd450 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 51.508 T 28-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM348_RS20020 d2b7c987b18da43de5c4147c821fd450 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 1.6E-119 T 28-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM348_RS20020 d2b7c987b18da43de5c4147c821fd450 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 5 306 3.6E-149 T 28-03-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 AM348_RS20020 d2b7c987b18da43de5c4147c821fd450 306 PIRSF PIRSF026649 2 306 1.8E-109 T 28-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM348_RS01005 b87f8c827771863e620579cd396ad3e5 178 Gene3D G3DSA:3.40.50.2020 1 175 4.7E-41 T 28-03-2018 AM348_RS01005 b87f8c827771863e620579cd396ad3e5 178 SUPERFAMILY SSF53271 3 174 2.1E-53 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS01005 b87f8c827771863e620579cd396ad3e5 178 Pfam PF00156 Phosphoribosyl transferase domain 13 160 8.6E-24 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS01005 b87f8c827771863e620579cd396ad3e5 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 1.5E-73 T 28-03-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 AM348_RS15165 af884c2c816ca28471cad15d17bf5ffa 323 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 12 305 1.2E-107 T 28-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM348_RS15165 af884c2c816ca28471cad15d17bf5ffa 323 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 4 310 53.097 T 28-03-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 AM348_RS15165 af884c2c816ca28471cad15d17bf5ffa 323 PIRSF PIRSF026649 9 314 3.0E-102 T 28-03-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 AM348_RS15165 af884c2c816ca28471cad15d17bf5ffa 323 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 10 314 1.6E-152 T 28-03-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 AM348_RS06105 03df111cb97724605a131b2f9ad29f9c 316 SUPERFAMILY SSF46785 4 115 1.03E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06105 03df111cb97724605a131b2f9ad29f9c 316 SUPERFAMILY SSF53850 94 308 8.32E-20 T 28-03-2018 AM348_RS06105 03df111cb97724605a131b2f9ad29f9c 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.8E-12 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS06105 03df111cb97724605a131b2f9ad29f9c 316 Gene3D G3DSA:3.40.190.10 171 275 2.9E-14 T 28-03-2018 AM348_RS06105 03df111cb97724605a131b2f9ad29f9c 316 Gene3D G3DSA:1.10.10.10 1 88 6.0E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06105 03df111cb97724605a131b2f9ad29f9c 316 Pfam PF03466 LysR substrate binding domain 147 303 1.9E-14 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS15145 915ffbd359afe9fd17f193e48c897089 261 SUPERFAMILY SSF81345 3 257 1.12E-41 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS15145 915ffbd359afe9fd17f193e48c897089 261 Pfam PF00950 ABC 3 transport family 1 257 6.2E-89 T 28-03-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 AM348_RS15145 915ffbd359afe9fd17f193e48c897089 261 Gene3D G3DSA:1.10.3470.10 1 261 4.1E-26 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS22660 ab3ad0b0e58e8d7ba223781328375e08 392 Gene3D G3DSA:1.10.468.10 40 203 1.2E-29 T 28-03-2018 AM348_RS22660 ab3ad0b0e58e8d7ba223781328375e08 392 TIGRFAM TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC 2 381 5.8E-192 T 28-03-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 AM348_RS22660 ab3ad0b0e58e8d7ba223781328375e08 392 SUPERFAMILY SSF48695 9 185 2.1E-51 T 28-03-2018 IPR011031 Multihaem cytochrome AM348_RS22660 ab3ad0b0e58e8d7ba223781328375e08 392 PIRSF PIRSF000014 1 383 1.6E-179 T 28-03-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 AM348_RS22660 ab3ad0b0e58e8d7ba223781328375e08 392 Gene3D G3DSA:1.10.760.10 275 386 0.32 T 28-03-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 AM348_RS22660 ab3ad0b0e58e8d7ba223781328375e08 392 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 184 4.7E-68 T 28-03-2018 IPR005126 NapC/NirT cytochrome c, N-terminal AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 8 280 1.6E-131 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 Pfam PF01842 ACT domain 8 68 1.6E-7 T 28-03-2018 IPR002912 ACT domain AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 SUPERFAMILY SSF55021 6 56 7.5E-9 T 28-03-2018 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 Pfam PF00551 Formyl transferase 86 262 1.6E-54 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 SUPERFAMILY SSF53328 86 279 5.23E-60 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 41 53 5.7E-70 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 86 108 5.7E-70 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 108 135 5.7E-70 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 9 35 5.7E-70 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 254 279 5.7E-70 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 232 254 5.7E-70 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 Gene3D G3DSA:3.30.70.260 5 79 2.6E-8 T 28-03-2018 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 Gene3D G3DSA:3.40.50.170 80 277 9.8E-53 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 PIRSF PIRSF036480 4 280 1.1E-113 T 28-03-2018 AM348_RS15910 b4f55953e3150e09811b046eff76072e 280 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 4 280 46.083 T 28-03-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 AM348_RS21595 f554300c471f3a6f96e8de79d4142ae4 149 Pfam PF02310 B12 binding domain 6 95 6.5E-14 T 28-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM348_RS21595 f554300c471f3a6f96e8de79d4142ae4 149 Gene3D G3DSA:3.40.50.280 1 148 1.0E-26 T 28-03-2018 AM348_RS21595 f554300c471f3a6f96e8de79d4142ae4 149 TIGRFAM TIGR01501 MthylAspMutase: methylaspartate mutase, S subunit 3 135 3.2E-70 T 28-03-2018 IPR006394 Glutamate mutase sigma subunit GO:0016866|GO:0019670 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS21595 f554300c471f3a6f96e8de79d4142ae4 149 Hamap MF_00526 Glutamate mutase sigma subunit [glmS]. 1 137 37.08 T 28-03-2018 IPR006394 Glutamate mutase sigma subunit GO:0016866|GO:0019670 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 AM348_RS21595 f554300c471f3a6f96e8de79d4142ae4 149 SUPERFAMILY SSF52242 4 137 5.36E-33 T 28-03-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 AM348_RS09090 f8de0cde0a917e42c6cc23d734e31f47 276 Pfam PF13988 Protein of unknown function (DUF4225) 82 248 3.7E-43 T 28-03-2018 IPR025320 Protein of unknown function DUF4225 AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 508 711 2.0E-47 T 28-03-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 Pfam PF13614 AAA domain 538 654 1.6E-11 T 28-03-2018 IPR025669 AAA domain AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 Pfam PF02706 Chain length determinant protein 16 107 1.3E-20 T 28-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 Gene3D G3DSA:3.40.50.300 496 715 2.9E-30 T 28-03-2018 AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 Pfam PF13807 G-rich domain on putative tyrosine kinase 367 447 5.1E-30 T 28-03-2018 IPR032807 Tyrosine kinase, G-rich domain AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 Gene3D G3DSA:3.30.1890.10 46 423 1.5E-66 T 28-03-2018 AM348_RS13695 e2ac399434d0f03c14d08c07bedbf4a4 720 SUPERFAMILY SSF52540 527 707 4.34E-36 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05620 e58dd262e1b72bd18eaffa1aaf4666b6 138 SUPERFAMILY SSF55729 9 126 3.55E-20 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS05620 e58dd262e1b72bd18eaffa1aaf4666b6 138 Pfam PF00583 Acetyltransferase (GNAT) family 26 115 3.2E-10 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS05620 e58dd262e1b72bd18eaffa1aaf4666b6 138 Gene3D G3DSA:3.40.630.30 7 137 2.9E-15 T 28-03-2018 AM348_RS11730 f6e74e35e4893c50ed1c11e65bd48ccd 156 Gene3D G3DSA:3.40.30.10 1 154 4.9E-42 T 28-03-2018 AM348_RS11730 f6e74e35e4893c50ed1c11e65bd48ccd 156 PIRSF PIRSF000239 1 151 6.1E-18 T 28-03-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS11730 f6e74e35e4893c50ed1c11e65bd48ccd 156 Pfam PF00578 AhpC/TSA family 7 134 1.9E-39 T 28-03-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 AM348_RS11730 f6e74e35e4893c50ed1c11e65bd48ccd 156 SUPERFAMILY SSF52833 3 154 1.04E-49 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.112 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 9.5E-39 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 9.5E-39 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 9.5E-39 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 28-03-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 Gene3D G3DSA:2.40.50.100 20 84 3.4E-31 T 28-03-2018 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-17 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 7.9E-44 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.8E-39 T 28-03-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08020 5eb45bdea8263d4e3bcc37cd53c6dadc 85 SUPERFAMILY SSF110324 2 81 3.14E-34 T 28-03-2018 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 SUPERFAMILY SSF46689 238 282 4.93E-8 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 Pfam PF12833 Helix-turn-helix domain 207 282 6.4E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 Gene3D G3DSA:1.10.10.60 196 240 7.0E-13 T 28-03-2018 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 SUPERFAMILY SSF51182 43 222 1.42E-13 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 SMART SM00342 201 282 3.7E-20 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 Gene3D G3DSA:2.60.120.10 21 195 4.7E-7 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 236 279 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 Gene3D G3DSA:1.10.10.60 241 282 2.4E-10 T 28-03-2018 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 267 3.1E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 282 3.1E-6 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS08525 0009b2fd4a71b10f665a254d357aea5a 282 Pfam PF02311 AraC-like ligand binding domain 53 128 1.8E-6 T 28-03-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 AM348_RS16590 760729604a1f881eb064690b19b91347 150 Gene3D G3DSA:3.10.450.50 20 150 5.2E-16 T 28-03-2018 AM348_RS16590 760729604a1f881eb064690b19b91347 150 Pfam PF08332 Calcium/calmodulin dependent protein kinase II association domain 31 148 1.8E-15 T 28-03-2018 IPR013543 Calcium/calmodulin-dependent protein kinase II, association-domain GO:0004683|GO:0005516|GO:0006468 Reactome: R-HSA-3371571|Reactome: R-HSA-399719|Reactome: R-HSA-438066|Reactome: R-HSA-442729|Reactome: R-HSA-442742|Reactome: R-HSA-442982|Reactome: R-HSA-5576892|Reactome: R-HSA-5578775|Reactome: R-HSA-5673001|Reactome: R-HSA-877300|Reactome: R-HSA-936837 AM348_RS16590 760729604a1f881eb064690b19b91347 150 PIRSF PIRSF028470 1 150 3.0E-57 T 28-03-2018 IPR016887 Uncharacterised conserved protein UCP028470, steroid isomerase-related AM348_RS16590 760729604a1f881eb064690b19b91347 150 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 32 148 4.8E-11 T 28-03-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 AM348_RS16590 760729604a1f881eb064690b19b91347 150 SUPERFAMILY SSF54427 30 145 5.93E-23 T 28-03-2018 IPR032710 NTF2-like domain AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 40.236 T 28-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 Gene3D G3DSA:1.10.3190.10 54 164 2.1E-43 T 28-03-2018 IPR023146 YfbU, alpha-helical bundle domain AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 SUPERFAMILY SSF116960 1 164 1.2E-70 T 28-03-2018 AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 PIRSF PIRSF006272 1 164 2.0E-80 T 28-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 Pfam PF03887 YfbU domain 1 164 4.6E-69 T 28-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 5.0E-94 T 28-03-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU AM348_RS12550 996b230742a2c7ac3e2af9a014a287b8 164 Gene3D G3DSA:1.10.287.680 1 47 5.4E-26 T 28-03-2018 IPR023145 YfbU, helix-hairpin domain AM348_RS22245 859d52c1984f43ba6b353ed8e5144c97 142 Gene3D G3DSA:3.40.50.620 2 142 6.5E-25 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22245 859d52c1984f43ba6b353ed8e5144c97 142 SUPERFAMILY SSF52402 1 142 5.53E-25 T 28-03-2018 AM348_RS22245 859d52c1984f43ba6b353ed8e5144c97 142 PRINTS PR01438 Universal stress protein signature 120 142 7.6E-14 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS22245 859d52c1984f43ba6b353ed8e5144c97 142 PRINTS PR01438 Universal stress protein signature 2 20 7.6E-14 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS22245 859d52c1984f43ba6b353ed8e5144c97 142 PRINTS PR01438 Universal stress protein signature 103 115 7.6E-14 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS22245 859d52c1984f43ba6b353ed8e5144c97 142 Pfam PF00582 Universal stress protein family 1 142 1.8E-24 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS11450 96bef3576681ac79cd521afc54f99118 199 SUPERFAMILY SSF53697 11 192 3.18E-33 T 28-03-2018 AM348_RS11450 96bef3576681ac79cd521afc54f99118 199 Gene3D G3DSA:3.40.50.10490 2 198 5.3E-38 T 28-03-2018 AM348_RS11450 96bef3576681ac79cd521afc54f99118 199 Pfam PF01380 SIS domain 41 167 8.5E-20 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS07670 ab9283486494acf80d202d7621abb7d2 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 80 1.0E-24 T 28-03-2018 IPR010398 Protein of unknown function DUF997 AM348_RS07670 ab9283486494acf80d202d7621abb7d2 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 1.0E-30 T 28-03-2018 IPR010398 Protein of unknown function DUF997 AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 SMART SM00448 5 116 8.7E-41 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 SMART SM00862 155 231 3.1E-30 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 Gene3D G3DSA:3.40.50.2300 2 127 1.3E-35 T 28-03-2018 AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 3.3E-28 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 SUPERFAMILY SSF46894 131 231 1.28E-31 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 Gene3D G3DSA:1.10.10.10 128 238 2.4E-35 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 SUPERFAMILY SSF52172 4 132 3.84E-40 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS17910 0c7354defa81dc9c96d95c72db002c01 240 Pfam PF00072 Response regulator receiver domain 7 116 6.2E-28 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 SUPERFAMILY SSF51735 113 274 8.69E-48 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 Gene3D G3DSA:3.40.50.720 144 255 1.1E-20 T 28-03-2018 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 7.2E-10 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 SMART SM00829 11 325 3.3E-27 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 Gene3D G3DSA:3.90.180.10 1 143 4.1E-35 T 28-03-2018 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 28-03-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 SUPERFAMILY SSF50129 5 142 4.56E-33 T 28-03-2018 IPR011032 GroES-like AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 Pfam PF00107 Zinc-binding dehydrogenase 152 257 9.4E-30 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS03545 fcfa414f5ceed0a6f70157411308f03a 327 Gene3D G3DSA:3.90.180.10 256 326 0.015 T 28-03-2018 AM348_RS13015 702c1f3b49893bb8318c64f5602c984a 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 3 114 3.0E-59 T 28-03-2018 IPR020489 Uncharacterised protein family YejG AM348_RS13015 702c1f3b49893bb8318c64f5602c984a 114 Pfam PF13989 YejG-like protein 4 108 6.5E-51 T 28-03-2018 IPR020489 Uncharacterised protein family YejG AM348_RS19280 235e975046e006f5aaa3ac27cb7580b0 60 SUPERFAMILY SSF103063 1 60 2.48E-31 T 28-03-2018 IPR015051 Protein YoaG AM348_RS19280 235e975046e006f5aaa3ac27cb7580b0 60 Gene3D G3DSA:3.30.160.220 3 55 2.0E-28 T 28-03-2018 IPR015051 Protein YoaG AM348_RS19280 235e975046e006f5aaa3ac27cb7580b0 60 Pfam PF08956 Domain of unknown function (DUF1869) 3 60 1.9E-31 T 28-03-2018 IPR015051 Protein YoaG AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 28.664 T 28-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 4.4E-60 T 28-03-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 6.9E-55 T 28-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 28-03-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 SMART SM01374 1 123 3.9E-86 T 28-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 Gene3D G3DSA:2.40.150.20 1 123 2.9E-53 T 28-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM348_RS07390 085432ff5f62d9b40e7465024b6fef37 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 28-03-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 SUPERFAMILY SSF52833 4 82 2.78E-21 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 2.3E-51 T 28-03-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 Gene3D G3DSA:3.40.30.10 1 85 5.2E-22 T 28-03-2018 AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 PRINTS PR00160 Glutaredoxin signature 3 21 6.5E-12 T 28-03-2018 IPR014025 Glutaredoxin subgroup AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 PRINTS PR00160 Glutaredoxin signature 66 79 6.5E-12 T 28-03-2018 IPR014025 Glutaredoxin subgroup AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 PRINTS PR00160 Glutaredoxin signature 52 65 6.5E-12 T 28-03-2018 IPR014025 Glutaredoxin subgroup AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 28-03-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 AM348_RS20960 c952751c08c77292e7f5aeda402ed8c6 87 Pfam PF00462 Glutaredoxin 4 69 6.4E-17 T 28-03-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 SMART SM00729 52 272 2.3E-57 T 28-03-2018 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 PIRSF PIRSF000167 2 454 3.5E-179 T 28-03-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 457 9.7E-238 T 28-03-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 Gene3D G3DSA:3.20.20.70 36 353 1.7E-47 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 Pfam PF06969 HemN C-terminal domain 363 431 8.5E-10 T 28-03-2018 IPR010723 HemN, C-terminal AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 SUPERFAMILY SSF102114 6 444 3.14E-147 T 28-03-2018 AM348_RS04645 3e43b2cfa96cb4098e93b8b99dac8e2b 457 Pfam PF04055 Radical SAM superfamily 57 226 1.4E-17 T 28-03-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 AM348_RS18640 38e7330691f96ebee11164792710dc98 334 SUPERFAMILY SSF141523 95 232 1.24E-28 T 28-03-2018 AM348_RS18640 38e7330691f96ebee11164792710dc98 334 Gene3D G3DSA:2.40.440.10 91 234 1.1E-29 T 28-03-2018 AM348_RS18640 38e7330691f96ebee11164792710dc98 334 SMART SM00257 41 85 4.7E-7 T 28-03-2018 IPR018392 LysM domain AM348_RS18640 38e7330691f96ebee11164792710dc98 334 Gene3D G3DSA:3.10.350.10 38 87 5.3E-9 T 28-03-2018 AM348_RS18640 38e7330691f96ebee11164792710dc98 334 Pfam PF01476 LysM domain 42 85 7.6E-9 T 28-03-2018 IPR018392 LysM domain AM348_RS18640 38e7330691f96ebee11164792710dc98 334 Pfam PF03734 L,D-transpeptidase catalytic domain 97 232 1.7E-21 T 28-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 SMART SM00448 6 117 2.1E-28 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Gene3D G3DSA:3.40.50.300 140 284 2.5E-10 T 28-03-2018 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Gene3D G3DSA:1.10.8.60 285 366 3.4E-14 T 28-03-2018 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Gene3D G3DSA:3.40.50.2300 2 139 3.3E-29 T 28-03-2018 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Pfam PF14532 Sigma-54 interaction domain 143 277 1.8E-17 T 28-03-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 SUPERFAMILY SSF52540 141 341 4.37E-26 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Gene3D G3DSA:1.10.10.60 367 410 2.8E-14 T 28-03-2018 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Pfam PF00072 Response regulator receiver domain 8 116 1.1E-26 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 SUPERFAMILY SSF46689 355 409 3.41E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 SUPERFAMILY SSF52172 5 185 5.27E-38 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12225 71c983948fac1ca18a4f28b7655e7d87 415 Pfam PF02954 Bacterial regulatory protein, Fis family 367 406 2.7E-9 T 28-03-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 AM348_RS02800 b776c49156f0ceb1a747fc91cfd1f01d 101 Gene3D G3DSA:3.40.50.2300 1 97 2.5E-17 T 28-03-2018 AM348_RS02800 b776c49156f0ceb1a747fc91cfd1f01d 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 4 79 1.5E-13 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS02800 b776c49156f0ceb1a747fc91cfd1f01d 101 SUPERFAMILY SSF52794 3 95 1.44E-17 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS01135 92f6f9c41743c186dbfae3ea60fc3c75 461 Gene3D G3DSA:3.30.450.90 51 186 1.4E-39 T 28-03-2018 AM348_RS01135 92f6f9c41743c186dbfae3ea60fc3c75 461 Pfam PF00437 Type II/IV secretion system protein 89 353 1.7E-84 T 28-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM348_RS01135 92f6f9c41743c186dbfae3ea60fc3c75 461 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 8 60 3.5E-6 T 28-03-2018 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 AM348_RS01135 92f6f9c41743c186dbfae3ea60fc3c75 461 SUPERFAMILY SSF52540 81 454 5.81E-87 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01135 92f6f9c41743c186dbfae3ea60fc3c75 461 Gene3D G3DSA:3.40.50.300 187 460 7.6E-53 T 28-03-2018 AM348_RS01135 92f6f9c41743c186dbfae3ea60fc3c75 461 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 281 295 - T 28-03-2018 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 AM348_RS23030 834dc352c542cd0c3c1b9d96551b8e95 397 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 375 1.3E-84 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS23030 834dc352c542cd0c3c1b9d96551b8e95 397 SUPERFAMILY SSF111369 52 300 2.75E-89 T 28-03-2018 AM348_RS23030 834dc352c542cd0c3c1b9d96551b8e95 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 293 2.7E-12 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS23030 834dc352c542cd0c3c1b9d96551b8e95 397 Pfam PF00529 HlyD membrane-fusion protein of T1SS 121 360 2.5E-8 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS23030 834dc352c542cd0c3c1b9d96551b8e95 397 Gene3D G3DSA:1.20.1600.10 50 385 6.9E-36 T 28-03-2018 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 352 5.8E-179 T 28-03-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 SMART SM00228 257 339 1.5E-13 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 PRINTS PR00834 HtrA/DegQ protease family signature 151 175 9.3E-48 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 PRINTS PR00834 HtrA/DegQ protease family signature 208 225 9.3E-48 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 PRINTS PR00834 HtrA/DegQ protease family signature 110 130 9.3E-48 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 PRINTS PR00834 HtrA/DegQ protease family signature 186 203 9.3E-48 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 PRINTS PR00834 HtrA/DegQ protease family signature 297 309 9.3E-48 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 PRINTS PR00834 HtrA/DegQ protease family signature 89 101 9.3E-48 T 28-03-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 Gene3D G3DSA:2.40.10.10 152 258 1.2E-31 T 28-03-2018 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 Gene3D G3DSA:2.30.42.10 259 355 1.2E-23 T 28-03-2018 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 SUPERFAMILY SSF50494 44 254 1.11E-61 T 28-03-2018 IPR009003 Peptidase S1, PA clan AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 SUPERFAMILY SSF50156 256 352 1.45E-21 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 Pfam PF13180 PDZ domain 258 347 7.5E-14 T 28-03-2018 IPR001478 PDZ domain GO:0005515 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 Pfam PF13365 Trypsin-like peptidase domain 80 215 1.8E-29 T 28-03-2018 AM348_RS07795 f1bb726ce1f19493d74684e209dbbcd9 355 Gene3D G3DSA:2.40.10.10 42 151 3.6E-32 T 28-03-2018 AM348_RS15620 49c1e90ce02c2ec709edd15b7af8b026 356 Gene3D G3DSA:3.30.1180.20 184 356 4.5E-53 T 28-03-2018 AM348_RS15620 49c1e90ce02c2ec709edd15b7af8b026 356 Gene3D G3DSA:3.40.50.10440 11 183 1.7E-65 T 28-03-2018 AM348_RS15620 49c1e90ce02c2ec709edd15b7af8b026 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 1.1E-152 T 28-03-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 AM348_RS15620 49c1e90ce02c2ec709edd15b7af8b026 356 Pfam PF02733 Dak1 domain 18 351 8.9E-125 T 28-03-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 AM348_RS15620 49c1e90ce02c2ec709edd15b7af8b026 356 SUPERFAMILY SSF82549 10 355 6.28E-124 T 28-03-2018 AM348_RS08350 f320a1281e6f734d76471daaaebac997 436 Pfam PF03313 Serine dehydratase alpha chain 193 428 4.9E-47 T 28-03-2018 IPR005130 Serine dehydratase-like, alpha subunit AM348_RS08350 f320a1281e6f734d76471daaaebac997 436 PIRSF PIRSF006054 5 435 1.0E-173 T 28-03-2018 IPR021144 Uncharacterised protein family UPF0597 AM348_RS08350 f320a1281e6f734d76471daaaebac997 436 Gene3D G3DSA:1.10.4100.10 264 411 5.0E-8 T 28-03-2018 AM348_RS08350 f320a1281e6f734d76471daaaebac997 436 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 9 433 34.803 T 28-03-2018 IPR021144 Uncharacterised protein family UPF0597 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 SUPERFAMILY SSF55681 116 424 1.55E-99 T 28-03-2018 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 41.637 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 PIRSF PIRSF001529 1 430 1.9E-186 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 5.0E-185 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 SUPERFAMILY SSF46589 1 112 4.55E-33 T 28-03-2018 IPR010978 tRNA-binding arm GO:0000166 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 8.6E-34 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 8.6E-34 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 8.6E-34 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 8.6E-34 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 8.6E-34 T 28-03-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 Gene3D G3DSA:3.30.930.10 105 430 5.8E-96 T 28-03-2018 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 229 406 4.4E-37 T 28-03-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 Gene3D G3DSA:1.10.287.40 2 104 6.1E-27 T 28-03-2018 AM348_RS20830 779cba2446e03cd66489de8ad77dad3e 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 6.0E-34 T 28-03-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 AM348_RS17715 8c45b4429cbced362d766c58acae5551 398 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 1 390 29.591 T 28-03-2018 IPR023495 Sugar efflux transporter, putative AM348_RS17715 8c45b4429cbced362d766c58acae5551 398 SUPERFAMILY SSF103473 5 386 8.63E-55 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17715 8c45b4429cbced362d766c58acae5551 398 Gene3D G3DSA:1.20.1250.20 199 398 1.1E-16 T 28-03-2018 AM348_RS17715 8c45b4429cbced362d766c58acae5551 398 Pfam PF07690 Major Facilitator Superfamily 18 349 1.7E-32 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17715 8c45b4429cbced362d766c58acae5551 398 Gene3D G3DSA:1.20.1250.20 2 198 1.8E-26 T 28-03-2018 AM348_RS11345 6c275b378b945d68243326687110fc81 516 Gene3D G3DSA:3.40.190.10 171 271 4.1E-5 T 28-03-2018 AM348_RS11345 6c275b378b945d68243326687110fc81 516 SUPERFAMILY SSF53955 245 398 2.61E-33 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS11345 6c275b378b945d68243326687110fc81 516 SMART SM00062 44 269 2.2E-42 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS11345 6c275b378b945d68243326687110fc81 516 Gene3D G3DSA:1.10.530.10 273 451 2.1E-34 T 28-03-2018 AM348_RS11345 6c275b378b945d68243326687110fc81 516 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 310 338 - T 28-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM348_RS11345 6c275b378b945d68243326687110fc81 516 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 268 4.2E-29 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS11345 6c275b378b945d68243326687110fc81 516 Pfam PF01464 Transglycosylase SLT domain 297 399 1.2E-21 T 28-03-2018 IPR008258 Transglycosylase SLT domain 1 AM348_RS11345 6c275b378b945d68243326687110fc81 516 SUPERFAMILY SSF53850 40 268 6.23E-35 T 28-03-2018 AM348_RS11345 6c275b378b945d68243326687110fc81 516 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 472 46.799 T 28-03-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 AM348_RS11345 6c275b378b945d68243326687110fc81 516 Gene3D G3DSA:3.40.190.10 30 170 7.3E-16 T 28-03-2018 AM348_RS06810 169fe8ce94ade521c7da10ce5ba5ceda 247 SUPERFAMILY SSF51695 5 239 1.88E-63 T 28-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM348_RS06810 169fe8ce94ade521c7da10ce5ba5ceda 247 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 12 239 3.0E-40 T 28-03-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 AM348_RS06810 169fe8ce94ade521c7da10ce5ba5ceda 247 Gene3D G3DSA:3.20.20.190 2 242 8.0E-60 T 28-03-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 Gene3D G3DSA:3.40.190.10 94 177 1.4E-11 T 28-03-2018 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 Pfam PF03466 LysR substrate binding domain 91 286 1.0E-32 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 Gene3D G3DSA:1.10.10.10 1 91 4.9E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 SUPERFAMILY SSF46785 2 85 1.24E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 Gene3D G3DSA:3.40.190.10 178 259 1.9E-17 T 28-03-2018 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.1E-20 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-7 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS02985 db6d99952f5f1fa688b5e6df905cfcf3 291 SUPERFAMILY SSF53850 90 289 3.8E-33 T 28-03-2018 AM348_RS04820 2c3007776c53d46cd60e438a8d169611 253 Pfam PF01048 Phosphorylase superfamily 21 245 1.1E-40 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS04820 2c3007776c53d46cd60e438a8d169611 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 28-03-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 AM348_RS04820 2c3007776c53d46cd60e438a8d169611 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 3.4E-130 T 28-03-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 AM348_RS04820 2c3007776c53d46cd60e438a8d169611 253 SUPERFAMILY SSF53167 6 250 6.28E-73 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS04820 2c3007776c53d46cd60e438a8d169611 253 Gene3D G3DSA:3.40.50.1580 3 253 5.8E-56 T 28-03-2018 AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 Gene3D G3DSA:3.60.15.10 1 251 9.3E-69 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 Pfam PF00753 Metallo-beta-lactamase superfamily 14 165 1.4E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 6.4E-103 T 28-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 SMART SM00849 11 165 3.1E-36 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 45.015 T 28-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 PIRSF PIRSF005457 1 251 1.8E-89 T 28-03-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 SUPERFAMILY SSF56281 1 250 8.8E-67 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS00550 2d7a9904676235b0c64459d994fe19af 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 1.4E-19 T 28-03-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 AM348_RS17695 eda10205ad2630f1e88d5aed667d6825 308 Pfam PF04960 Glutaminase 24 308 8.7E-114 T 28-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM348_RS17695 eda10205ad2630f1e88d5aed667d6825 308 SUPERFAMILY SSF56601 8 308 6.94E-115 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS17695 eda10205ad2630f1e88d5aed667d6825 308 Gene3D G3DSA:3.40.710.10 3 308 9.3E-125 T 28-03-2018 AM348_RS17695 eda10205ad2630f1e88d5aed667d6825 308 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 308 2.3E-131 T 28-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM348_RS17695 eda10205ad2630f1e88d5aed667d6825 308 Hamap MF_00313 Glutaminase [glsA]. 6 308 46.968 T 28-03-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 AM348_RS06840 18166d0c598356866b1d18749b012914 162 Gene3D G3DSA:3.40.630.30 1 162 1.2E-34 T 28-03-2018 AM348_RS06840 18166d0c598356866b1d18749b012914 162 SUPERFAMILY SSF55729 4 161 5.06E-37 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS06840 18166d0c598356866b1d18749b012914 162 Pfam PF13420 Acetyltransferase (GNAT) domain 6 155 4.9E-14 T 28-03-2018 AM348_RS10930 3d6654e0eac93318f241b260cdedd231 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 484 6.2E-206 T 28-03-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 AM348_RS10930 3d6654e0eac93318f241b260cdedd231 501 SUPERFAMILY SSF53720 2 487 6.28E-150 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS10930 3d6654e0eac93318f241b260cdedd231 501 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS10930 3d6654e0eac93318f241b260cdedd231 501 Gene3D G3DSA:3.40.605.10 1 262 8.2E-84 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS10930 3d6654e0eac93318f241b260cdedd231 501 Pfam PF00171 Aldehyde dehydrogenase family 18 480 1.3E-138 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS10930 3d6654e0eac93318f241b260cdedd231 501 Gene3D G3DSA:3.40.309.10 263 462 2.2E-64 T 28-03-2018 AM348_RS09600 1a471912bbcf126d8f9c5cdd700f82f6 472 Gene3D G3DSA:3.90.1700.10 305 467 3.7E-71 T 28-03-2018 AM348_RS09600 1a471912bbcf126d8f9c5cdd700f82f6 472 Gene3D G3DSA:3.90.1710.10 161 302 1.4E-60 T 28-03-2018 AM348_RS09600 1a471912bbcf126d8f9c5cdd700f82f6 472 Pfam PF06545 Protein of unknown function (DUF1116) 143 357 1.1E-89 T 28-03-2018 IPR009499 Protein of unknown function DUF1116 AM348_RS09600 1a471912bbcf126d8f9c5cdd700f82f6 472 Gene3D G3DSA:1.10.10.660 96 160 1.8E-32 T 28-03-2018 IPR024033 Uncharacterised domain, YlbE AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 PRINTS PR00171 Sugar transporter signature 26 36 2.3E-23 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 PRINTS PR00171 Sugar transporter signature 262 272 2.3E-23 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 PRINTS PR00171 Sugar transporter signature 352 373 2.3E-23 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 PRINTS PR00171 Sugar transporter signature 375 387 2.3E-23 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 PRINTS PR00171 Sugar transporter signature 109 128 2.3E-23 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 ProSitePatterns PS00216 Sugar transport proteins signature 1. 307 323 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 Pfam PF00083 Sugar (and other) transporter 18 450 4.9E-139 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 7 447 3.0E-150 T 28-03-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 Gene3D G3DSA:1.20.1250.20 232 463 1.4E-41 T 28-03-2018 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 Gene3D G3DSA:1.20.1250.20 3 231 3.6E-37 T 28-03-2018 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 ProSitePatterns PS00217 Sugar transport proteins signature 2. 114 139 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS09275 08ef3912e055f23a02c643ca6664ede2 464 SUPERFAMILY SSF103473 13 448 1.44E-77 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 SUPERFAMILY SSF53383 5 381 2.5E-118 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 380 4.5E-141 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 190 204 - T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 Gene3D G3DSA:3.90.1150.10 248 386 1.1E-48 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 382 1.7E-212 T 28-03-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 PIRSF PIRSF001434 1 384 1.5E-130 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS04235 b06934c95a776d0479315ab3aa202af9 386 Gene3D G3DSA:3.40.640.10 1 247 1.4E-55 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 3.8E-27 T 28-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 28-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 54.678 T 28-03-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 Gene3D G3DSA:1.10.287.180 3 75 7.6E-30 T 28-03-2018 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 SUPERFAMILY SSF54534 80 155 7.98E-21 T 28-03-2018 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 SUPERFAMILY SSF46557 3 78 2.09E-28 T 28-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 Gene3D G3DSA:3.10.50.30 76 157 3.6E-22 T 28-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 PIRSF PIRSF006092 1 157 4.7E-46 T 28-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 2 157 5.8E-87 T 28-03-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 29.149 T 28-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 28-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM348_RS07000 1fbef7bfda211d9c69f6d179d8dea83a 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 3.1E-23 T 28-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM348_RS14025 646ceb7c7b32ed0e8973df6bcadd5618 154 Pfam PF00936 BMC domain 4 80 3.5E-20 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14025 646ceb7c7b32ed0e8973df6bcadd5618 154 SMART SM00877 3 80 1.2E-24 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14025 646ceb7c7b32ed0e8973df6bcadd5618 154 SUPERFAMILY SSF143414 3 90 1.11E-22 T 28-03-2018 AM348_RS14025 646ceb7c7b32ed0e8973df6bcadd5618 154 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 3 66 2.0E-22 T 28-03-2018 AM348_RS19490 9f617858cf9edc21346b8559e283e608 85 SUPERFAMILY SSF159871 3 85 1.57E-24 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS19490 9f617858cf9edc21346b8559e283e608 85 Pfam PF07338 Protein of unknown function (DUF1471) 34 85 2.0E-19 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS19490 9f617858cf9edc21346b8559e283e608 85 Gene3D G3DSA:3.30.1660.10 21 85 2.2E-21 T 28-03-2018 IPR025543 Dodecin-like AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 Gene3D G3DSA:3.40.640.10 4 259 5.9E-41 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 394 1.4E-169 T 28-03-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 391 7.1E-120 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 Gene3D G3DSA:3.90.1150.10 260 395 1.5E-37 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 PIRSF PIRSF001434 1 395 1.2E-117 T 28-03-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 AM348_RS08925 7ba26e7734287ca33f6866a4fc14570c 395 SUPERFAMILY SSF53383 24 392 3.99E-90 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS11780 583f708d9616ba7356b658ba63bd043e 118 SUPERFAMILY SSF52833 1 114 1.98E-31 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS11780 583f708d9616ba7356b658ba63bd043e 118 Gene3D G3DSA:3.40.30.10 1 116 3.3E-36 T 28-03-2018 AM348_RS11780 583f708d9616ba7356b658ba63bd043e 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 114 9.8E-35 T 28-03-2018 IPR006504 Transcriptional regulator Spx/MgsR AM348_RS11780 583f708d9616ba7356b658ba63bd043e 118 Pfam PF03960 ArsC family 5 111 2.9E-16 T 28-03-2018 IPR006660 Arsenate reductase-like AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 Gene3D G3DSA:3.30.420.40 1 237 2.2E-77 T 28-03-2018 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 7.6E-85 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 TIGRFAM TIGR01312 XylB: xylulokinase 3 477 4.2E-192 T 28-03-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 PIRSF PIRSF000538 1 484 9.4E-138 T 28-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 347 367 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 SUPERFAMILY SSF53067 242 483 5.01E-65 T 28-03-2018 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 SUPERFAMILY SSF53067 2 242 3.48E-72 T 28-03-2018 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 249 436 1.9E-31 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS06165 7c42480e472d2d75a3cb8f80ccf815f9 484 Gene3D G3DSA:3.30.420.40 238 483 4.6E-59 T 28-03-2018 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 Gene3D G3DSA:3.40.190.10 214 300 5.6E-23 T 28-03-2018 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 Pfam PF03466 LysR substrate binding domain 124 328 4.2E-39 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 Gene3D G3DSA:1.10.10.10 18 123 1.7E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 41 99 1.3E-19 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 76 87 8.5E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 66 76 8.5E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 55 66 8.5E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 SUPERFAMILY SSF53850 124 332 9.59E-42 T 28-03-2018 AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 SUPERFAMILY SSF46785 32 146 1.86E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19870 9992cab328f6cf08d077dfce4f0f9311 341 Gene3D G3DSA:3.40.190.10 127 213 1.2E-9 T 28-03-2018 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 SUPERFAMILY SSF51569 5 290 4.19E-82 T 28-03-2018 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 SMART SM01130 4 293 3.5E-86 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 TIGRFAM TIGR00683 nanA: N-acetylneuraminate lyase 5 296 8.8E-160 T 28-03-2018 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581|Reactome: R-HSA-4085001 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 Pfam PF00701 Dihydrodipicolinate synthetase family 5 291 6.2E-107 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 2.6E-20 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 2.6E-20 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 2.6E-20 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 2.6E-20 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 PIRSF PIRSF001365 1 297 1.0E-81 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 Gene3D G3DSA:3.20.20.70 3 297 5.3E-81 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 Hamap MF_01237 N-acetylneuraminate lyase [nanA]. 5 294 50.888 T 28-03-2018 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581|Reactome: R-HSA-4085001 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 137 167 - T 28-03-2018 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 AM348_RS07850 10c34b5bbccb21e4d2ea4f2a960413f8 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 41 58 - T 28-03-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 Gene3D G3DSA:3.40.190.10 90 179 8.0E-11 T 28-03-2018 AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 Pfam PF03466 LysR substrate binding domain 90 291 9.8E-22 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 SUPERFAMILY SSF46785 3 89 4.36E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 Gene3D G3DSA:1.10.10.10 1 85 1.5E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 SUPERFAMILY SSF53850 90 292 8.87E-26 T 28-03-2018 AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 Gene3D G3DSA:3.40.190.10 180 260 3.3E-9 T 28-03-2018 AM348_RS23405 19bac956f81451daed3b3e09e9c56cbb 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 1.7E-14 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 SUPERFAMILY SSF48179 614 706 6.04E-24 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 492 586 2.6E-28 T 28-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 204 1.1E-43 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Gene3D G3DSA:3.90.226.10 2 206 2.7E-60 T 28-03-2018 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Gene3D G3DSA:1.10.1040.10 491 591 7.9E-25 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 SUPERFAMILY SSF52096 7 300 2.41E-72 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 1 706 53.386 T 28-03-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 6 706 0.0 T 28-03-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 489 513 - T 28-03-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 311 489 3.4E-59 T 28-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Gene3D G3DSA:3.40.50.720 253 490 7.3E-55 T 28-03-2018 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 Gene3D G3DSA:1.10.1040.10 616 710 7.9E-18 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 SUPERFAMILY SSF48179 492 595 1.19E-28 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS12355 a0140d90270ab38389c2741ac061da94 715 SUPERFAMILY SSF51735 309 489 1.04E-51 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 Gene3D G3DSA:2.30.110.10 17 218 4.6E-70 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 SUPERFAMILY SSF50475 21 218 6.73E-68 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 42 122 6.8E-25 T 28-03-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 PIRSF PIRSF000190 1 218 5.6E-86 T 28-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 188 201 - T 28-03-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 16 218 38.742 T 28-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 178 218 2.6E-19 T 28-03-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM348_RS18170 a430669a5e21e19a5b68c56a279c2df3 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 218 4.1E-101 T 28-03-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 Pfam PF00155 Aminotransferase class I and II 118 461 3.3E-35 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 SUPERFAMILY SSF46785 1 70 9.99E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 Gene3D G3DSA:3.40.640.10 123 371 1.2E-49 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 SUPERFAMILY SSF53383 80 466 3.16E-94 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 Gene3D G3DSA:1.10.10.10 1 74 7.2E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 3.1E-16 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 SMART SM00345 7 66 5.5E-23 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS02000 3ebba400cd1d13051604ed2ff27bfb48 470 Gene3D G3DSA:3.90.1150.10 372 469 6.7E-24 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 4.4E-111 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 Gene3D G3DSA:1.10.3860.10 1 408 3.2E-114 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 4.8E-30 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.8E-30 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.8E-30 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 4.8E-30 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 4.8E-30 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 4.8E-30 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 28-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 SUPERFAMILY SSF118215 9 401 2.75E-121 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 28-03-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site AM348_RS06350 32a39771c5a619bab3ff342621a7e069 428 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.994 T 28-03-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 SMART SM00859 6 121 2.9E-32 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 317 1.9E-36 T 28-03-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 SUPERFAMILY SSF55347 131 319 5.57E-49 T 28-03-2018 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 PIRSF PIRSF000148 4 337 1.4E-94 T 28-03-2018 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 Gene3D G3DSA:3.30.360.10 144 314 1.3E-41 T 28-03-2018 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 SUPERFAMILY SSF51735 5 157 6.2E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 118 1.9E-24 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS12425 7b54ff44cac0962c3e38e15ae8d2da90 337 Gene3D G3DSA:3.40.50.720 1 143 1.3E-29 T 28-03-2018 AM348_RS11945 e7dd6968a9e3714a08802845be5fdb77 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 295 1.0E-88 T 28-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM348_RS11945 e7dd6968a9e3714a08802845be5fdb77 299 Pfam PF04261 Dyp-type peroxidase family 5 295 2.8E-96 T 28-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM348_RS11945 e7dd6968a9e3714a08802845be5fdb77 299 SUPERFAMILY SSF54909 1 296 2.86E-90 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 Gene3D G3DSA:1.10.10.10 6 90 7.4E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 Gene3D G3DSA:3.40.190.10 179 267 9.4E-25 T 28-03-2018 AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.9E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 Gene3D G3DSA:3.40.190.10 92 178 1.5E-10 T 28-03-2018 AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 Pfam PF03466 LysR substrate binding domain 93 292 4.9E-34 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 SUPERFAMILY SSF46785 7 90 8.88E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS15475 0c5ca271d445970b2de81709a2d6776f 305 SUPERFAMILY SSF53850 93 298 1.76E-38 T 28-03-2018 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 48 60 - T 28-03-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 Gene3D G3DSA:3.40.190.10 247 329 2.7E-27 T 28-03-2018 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 Gene3D G3DSA:3.40.190.10 126 246 7.2E-28 T 28-03-2018 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 12 326 6.2E-192 T 28-03-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 Gene3D G3DSA:3.40.190.10 20 125 1.7E-25 T 28-03-2018 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 28-03-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 Pfam PF13531 Bacterial extracellular solute-binding protein 32 280 2.6E-46 T 28-03-2018 AM348_RS04360 b749ff279cc4d1d8065db81885b7839c 329 SUPERFAMILY SSF53850 21 326 8.7E-94 T 28-03-2018 AM348_RS14175 edfbdfc683184dfd4c65d0453e4cb833 354 Gene3D G3DSA:1.10.1610.10 5 72 1.6E-27 T 28-03-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14175 edfbdfc683184dfd4c65d0453e4cb833 354 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 345 2.5E-115 T 28-03-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14175 edfbdfc683184dfd4c65d0453e4cb833 354 Pfam PF02277 Phosphoribosyltransferase 11 344 1.8E-117 T 28-03-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14175 edfbdfc683184dfd4c65d0453e4cb833 354 Gene3D G3DSA:3.40.50.10210 73 329 6.8E-92 T 28-03-2018 AM348_RS14175 edfbdfc683184dfd4c65d0453e4cb833 354 SUPERFAMILY SSF52733 5 343 6.67E-111 T 28-03-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14175 edfbdfc683184dfd4c65d0453e4cb833 354 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 348 33.132 T 28-03-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS05535 2372a12d20025b4340ddfba6d68d2da6 438 Pfam PF07690 Major Facilitator Superfamily 45 374 4.1E-19 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05535 2372a12d20025b4340ddfba6d68d2da6 438 Gene3D G3DSA:1.20.1250.20 15 239 2.4E-18 T 28-03-2018 AM348_RS05535 2372a12d20025b4340ddfba6d68d2da6 438 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 21 424 5.9E-98 T 28-03-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 AM348_RS05535 2372a12d20025b4340ddfba6d68d2da6 438 Gene3D G3DSA:1.20.1250.20 240 430 9.4E-22 T 28-03-2018 AM348_RS05535 2372a12d20025b4340ddfba6d68d2da6 438 SUPERFAMILY SSF103473 22 171 5.23E-38 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05535 2372a12d20025b4340ddfba6d68d2da6 438 SUPERFAMILY SSF103473 205 425 5.23E-38 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00960 0312eac5f600ee52c67790390c2492d8 406 Gene3D G3DSA:2.60.40.1090 249 406 1.3E-20 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00960 0312eac5f600ee52c67790390c2492d8 406 Pfam PF00419 Fimbrial protein 246 405 7.0E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00960 0312eac5f600ee52c67790390c2492d8 406 SUPERFAMILY SSF49401 250 406 9.94E-17 T 28-03-2018 IPR008966 Adhesion domain AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 1.0E-40 T 28-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.132 T 28-03-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 Gene3D G3DSA:1.10.287.10 2 89 6.6E-37 T 28-03-2018 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 7.0E-40 T 28-03-2018 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 Pfam PF00312 Ribosomal protein S15 9 88 1.5E-37 T 28-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 28-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 SMART SM01387 8 88 6.6E-52 T 28-03-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS08140 f0c95edb037e280ed1c68ea87612755d 89 SUPERFAMILY SSF47060 3 89 5.3E-35 T 28-03-2018 IPR009068 S15/NS1, RNA-binding AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 Pfam PF00210 Ferritin-like domain 8 143 8.8E-39 T 28-03-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 SUPERFAMILY SSF47240 1 154 3.75E-53 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 Gene3D G3DSA:1.20.1260.10 2 150 3.6E-39 T 28-03-2018 IPR012347 Ferritin-related AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.0E-76 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 3.5E-81 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS07325 f31917562e9691eba68e570e9cf6afde 158 PIRSF PIRSF002560 1 157 1.7E-71 T 28-03-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 AM348_RS11020 2d6ec67727adff18ad5e3ae76d9e6fb4 151 Gene3D G3DSA:3.30.530.20 5 148 2.8E-32 T 28-03-2018 IPR023393 START-like domain AM348_RS11020 2d6ec67727adff18ad5e3ae76d9e6fb4 151 SUPERFAMILY SSF55961 5 146 2.75E-34 T 28-03-2018 AM348_RS11020 2d6ec67727adff18ad5e3ae76d9e6fb4 151 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 14 139 7.2E-32 T 28-03-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 AM348_RS02050 7469108080b2f8eee867c851bb0750c9 383 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 40 383 4.2E-81 T 28-03-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit AM348_RS12980 9b74c524644c50f672d01c8a1cb6b2b7 335 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 46.969 T 28-03-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 AM348_RS12980 9b74c524644c50f672d01c8a1cb6b2b7 335 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 3.7E-96 T 28-03-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 AM348_RS17500 76fbd13b2b6b448e76f3ce156bcf7215 109 Pfam PF06411 HdeA/HdeB family 12 97 1.6E-21 T 28-03-2018 IPR010486 HNS-dependent expression A/B AM348_RS17500 76fbd13b2b6b448e76f3ce156bcf7215 109 Gene3D G3DSA:1.10.890.10 28 101 1.3E-19 T 28-03-2018 AM348_RS17500 76fbd13b2b6b448e76f3ce156bcf7215 109 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 1 107 6.0E-51 T 28-03-2018 AM348_RS17500 76fbd13b2b6b448e76f3ce156bcf7215 109 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 2 104 28.089 T 28-03-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 AM348_RS04040 2f55e4082c904c877e74b8ee3dd66033 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 11 316 1.5E-179 T 28-03-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AM348_RS04040 2f55e4082c904c877e74b8ee3dd66033 316 PIRSF PIRSF000545 1 316 9.8E-149 T 28-03-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AM348_RS04040 2f55e4082c904c877e74b8ee3dd66033 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 244 8.2E-14 T 28-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 AM348_RS04040 2f55e4082c904c877e74b8ee3dd66033 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 189.349 T 28-03-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 AM348_RS04040 2f55e4082c904c877e74b8ee3dd66033 316 Gene3D G3DSA:3.40.50.300 9 316 8.1E-55 T 28-03-2018 AM348_RS04040 2f55e4082c904c877e74b8ee3dd66033 316 SUPERFAMILY SSF52540 10 316 3.27E-78 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 Gene3D G3DSA:1.20.1250.20 231 430 1.9E-22 T 28-03-2018 AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 Gene3D G3DSA:1.20.1250.20 10 225 6.7E-26 T 28-03-2018 AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 20 410 5.6E-142 T 28-03-2018 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 Pfam PF07690 Major Facilitator Superfamily 19 376 2.0E-31 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 291 308 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 SUPERFAMILY SSF103473 14 422 1.83E-67 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS21920 c6ad603a7b4d2c07d939c17cf65b64e9 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 SMART SM00363 7 63 1.7E-12 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 Pfam PF01479 S4 domain 8 52 2.2E-12 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 28-03-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 Gene3D G3DSA:3.10.290.10 4 65 8.4E-18 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 SUPERFAMILY SSF55174 7 62 1.46E-13 T 28-03-2018 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 Gene3D G3DSA:3.30.70.1560 146 207 5.7E-23 T 28-03-2018 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 Gene3D G3DSA:3.30.70.580 66 145 2.2E-17 T 28-03-2018 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 226 1.2E-53 T 28-03-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 SUPERFAMILY SSF55120 69 229 2.4E-38 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS03710 058413de42dd80c9aad3759dcfdfa496 291 Pfam PF00849 RNA pseudouridylate synthase 69 195 2.8E-15 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS16375 db5291c67798f82456346ba1e8e329e4 247 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 244 4.6E-98 T 28-03-2018 IPR009627 Uncharacterised protein family UPF0259 AM348_RS16375 db5291c67798f82456346ba1e8e329e4 247 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 246 21.92 T 28-03-2018 IPR009627 Uncharacterised protein family UPF0259 AM348_RS14800 6c0bb6b150aa978a3dfc38514bac0db4 96 Pfam PF13227 Protein of unknown function (DUF4035) 32 82 2.8E-19 T 28-03-2018 IPR025116 Protein of unknown function DUF4035 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 SUPERFAMILY SSF55021 665 741 3.07E-14 T 28-03-2018 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 2.0E-185 T 28-03-2018 IPR004811 RelA/SpoT family GO:0015969 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 SUPERFAMILY SSF81301 196 410 4.9E-63 T 28-03-2018 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Pfam PF13291 ACT domain 664 740 4.7E-18 T 28-03-2018 IPR002912 ACT domain AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 SUPERFAMILY SSF109604 26 207 4.08E-44 T 28-03-2018 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 SMART SM00954 251 361 4.1E-65 T 28-03-2018 IPR007685 RelA/SpoT GO:0015969 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 SUPERFAMILY SSF81271 399 465 5.07E-22 T 28-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Pfam PF13328 HD domain 46 191 2.7E-38 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Gene3D G3DSA:3.30.460.10 208 341 1.9E-42 T 28-03-2018 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Gene3D G3DSA:3.30.70.260 660 741 2.0E-11 T 28-03-2018 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Pfam PF02824 TGS domain 406 465 4.5E-21 T 28-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 3.0E-36 T 28-03-2018 IPR007685 RelA/SpoT GO:0015969 AM348_RS09995 3dabaf1dfaf16d53fc4de67e6a6891e7 744 Gene3D G3DSA:3.10.20.30 400 475 9.6E-25 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 Pfam PF00588 SpoU rRNA Methylase family 96 236 1.7E-40 T 28-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.05 T 28-03-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 SUPERFAMILY SSF55315 2 76 2.47E-20 T 28-03-2018 IPR029064 50S ribosomal protein L30e-like AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 SUPERFAMILY SSF75217 69 243 2.16E-49 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 SMART SM00967 4 80 8.8E-21 T 28-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 Gene3D G3DSA:3.40.1280.10 77 243 2.4E-49 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 77 3.6E-18 T 28-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 Gene3D G3DSA:3.30.1330.30 1 76 1.2E-17 T 28-03-2018 IPR029064 50S ribosomal protein L30e-like AM348_RS02840 55454343a70227e1461bca0ee6a9563c 243 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 1.9E-93 T 28-03-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 AM348_RS19235 4d84d522af5c6d1e68dc5fc277662a2f 235 SUPERFAMILY SSF52317 9 234 4.92E-41 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS19235 4d84d522af5c6d1e68dc5fc277662a2f 235 Gene3D G3DSA:3.40.50.880 6 235 9.3E-31 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS19235 4d84d522af5c6d1e68dc5fc277662a2f 235 Pfam PF00117 Glutamine amidotransferase class-I 33 209 4.5E-16 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Gene3D G3DSA:1.10.8.60 491 584 3.1E-33 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 SUPERFAMILY SSF54211 595 771 2.2E-59 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 1.8E-42 T 28-03-2018 IPR003111 Lon, substrate-binding domain AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 28-03-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 SUPERFAMILY SSF88697 10 201 5.22E-52 T 28-03-2018 IPR015947 PUA-like domain AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 PIRSF PIRSF001174 1 775 0.0 T 28-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 SMART SM00382 348 492 3.4E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Gene3D G3DSA:1.10.4060.10 122 211 2.1E-31 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 SUPERFAMILY SSF52540 313 587 2.89E-51 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Gene3D G3DSA:2.30.130.40 1 118 2.1E-31 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 771 0.0 T 28-03-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Gene3D G3DSA:3.30.230.10 585 772 3.3E-70 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 SMART SM00464 10 202 2.8E-87 T 28-03-2018 IPR003111 Lon, substrate-binding domain AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.522 T 28-03-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 2.9E-98 T 28-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 1.5E-17 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 Gene3D G3DSA:3.40.50.300 313 490 4.6E-30 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 2.5E-57 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 2.5E-57 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 2.5E-57 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 2.5E-57 T 28-03-2018 AM348_RS23195 ab4b7752b35c0558b7c9caa1d546be13 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 2.5E-57 T 28-03-2018 AM348_RS08725 ef807546c2499aafee7e6b0d5e7cd725 433 Gene3D G3DSA:2.40.320.10 1 212 7.7E-47 T 28-03-2018 AM348_RS08725 ef807546c2499aafee7e6b0d5e7cd725 433 Pfam PF01928 CYTH domain 3 196 5.4E-37 T 28-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AM348_RS08725 ef807546c2499aafee7e6b0d5e7cd725 433 SUPERFAMILY SSF55154 1 219 3.6E-53 T 28-03-2018 IPR033469 CYTH-like domain Reactome: R-HSA-196819 AM348_RS08725 ef807546c2499aafee7e6b0d5e7cd725 433 SMART SM01118 2 202 3.6E-40 T 28-03-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 SUPERFAMILY SSF54368 26 132 1.57E-8 T 28-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 Pfam PF00120 Glutamine synthetase, catalytic domain 134 467 2.6E-101 T 28-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 Gene3D G3DSA:3.30.590.10 133 472 1.2E-89 T 28-03-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 SUPERFAMILY SSF55931 134 469 1.11E-96 T 28-03-2018 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 SMART SM01230 133 390 5.1E-95 T 28-03-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 Gene3D G3DSA:3.10.20.70 21 132 1.1E-14 T 28-03-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 AM348_RS00225 39c8388ceabf07a956a9ecdf5223bb74 472 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 271 286 - T 28-03-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 AM348_RS04345 756a19237b60ed7312dd765c82c8449a 490 PIRSF PIRSF002457 2 490 3.6E-127 T 28-03-2018 IPR030676 Citrate carrier CitT-related AM348_RS04345 756a19237b60ed7312dd765c82c8449a 490 Pfam PF00939 Sodium:sulfate symporter transmembrane region 9 490 8.4E-128 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS04345 756a19237b60ed7312dd765c82c8449a 490 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 27 484 1.3E-106 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 Gene3D G3DSA:3.30.360.10 165 318 2.0E-53 T 28-03-2018 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 SUPERFAMILY SSF51735 1 179 3.39E-56 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 Gene3D G3DSA:3.40.50.720 1 164 2.3E-66 T 28-03-2018 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 PIRSF PIRSF000149 1 337 2.0E-134 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 105 2.5E-34 T 28-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 SMART SM00846 3 155 7.3E-81 T 28-03-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 66.187 T 28-03-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 28-03-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 5.6E-30 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 5.6E-30 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 5.6E-30 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 5.6E-30 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 5.6E-30 T 28-03-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 3.4E-55 T 28-03-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 2.9E-195 T 28-03-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 AM348_RS09325 7e15ac37a1828187fca2890d74ecff59 342 SUPERFAMILY SSF55347 155 317 1.1E-58 T 28-03-2018 AM348_RS00900 8350d61fbf46f529b0e54914e2df1f71 176 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 174 22.319 T 28-03-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AM348_RS00900 8350d61fbf46f529b0e54914e2df1f71 176 Gene3D G3DSA:3.90.1140.10 1 176 5.8E-31 T 28-03-2018 AM348_RS00900 8350d61fbf46f529b0e54914e2df1f71 176 Pfam PF02834 LigT like Phosphoesterase 11 89 9.5E-12 T 28-03-2018 IPR014051 Phosphoesterase, HXTX AM348_RS00900 8350d61fbf46f529b0e54914e2df1f71 176 Pfam PF02834 LigT like Phosphoesterase 92 166 7.2E-8 T 28-03-2018 IPR014051 Phosphoesterase, HXTX AM348_RS00900 8350d61fbf46f529b0e54914e2df1f71 176 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 174 4.5E-41 T 28-03-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 AM348_RS00900 8350d61fbf46f529b0e54914e2df1f71 176 SUPERFAMILY SSF55144 5 174 3.92E-45 T 28-03-2018 IPR009097 Cyclic phosphodiesterase AM348_RS21160 df1946a302c57a208470aa3a5a7a7a8f 295 SUPERFAMILY SSF103481 46 136 8.11E-7 T 28-03-2018 AM348_RS21160 df1946a302c57a208470aa3a5a7a7a8f 295 SUPERFAMILY SSF103481 185 278 2.16E-9 T 28-03-2018 AM348_RS21160 df1946a302c57a208470aa3a5a7a7a8f 295 Pfam PF00892 EamA-like transporter family 148 277 2.0E-17 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS08460 a81ab67a7b62eb7dcfd1346b18a15550 378 PIRSF PIRSF037565 1 374 1.4E-160 T 28-03-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS08460 a81ab67a7b62eb7dcfd1346b18a15550 378 Pfam PF05175 Methyltransferase small domain 199 370 1.9E-58 T 28-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM348_RS08460 a81ab67a7b62eb7dcfd1346b18a15550 378 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 302 308 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS08460 a81ab67a7b62eb7dcfd1346b18a15550 378 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 373 49.172 T 28-03-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS08460 a81ab67a7b62eb7dcfd1346b18a15550 378 SUPERFAMILY SSF53335 191 373 7.02E-29 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS08460 a81ab67a7b62eb7dcfd1346b18a15550 378 Gene3D G3DSA:3.40.50.150 183 378 1.2E-36 T 28-03-2018 AM348_RS05445 74e0b4abbf454426f2fe65c15fdbd560 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 3.9E-22 T 28-03-2018 IPR002068 Alpha crystallin/Hsp20 domain AM348_RS05445 74e0b4abbf454426f2fe65c15fdbd560 137 SUPERFAMILY SSF49764 31 137 9.42E-20 T 28-03-2018 IPR008978 HSP20-like chaperone AM348_RS05445 74e0b4abbf454426f2fe65c15fdbd560 137 Gene3D G3DSA:2.60.40.790 5 137 2.9E-20 T 28-03-2018 IPR008978 HSP20-like chaperone AM348_RS05445 74e0b4abbf454426f2fe65c15fdbd560 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 49.826 T 28-03-2018 IPR023728 Small heat shock protein IbpA AM348_RS10495 42d021eb8198de18698767a025c7143e 354 Pfam PF00154 recA bacterial DNA recombination protein 9 270 4.2E-142 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 PRINTS PR00142 RecA protein signature 129 158 8.1E-84 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 PRINTS PR00142 RecA protein signature 95 124 8.1E-84 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 PRINTS PR00142 RecA protein signature 167 196 8.1E-84 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 PRINTS PR00142 RecA protein signature 212 240 8.1E-84 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 PRINTS PR00142 RecA protein signature 299 316 8.1E-84 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 PRINTS PR00142 RecA protein signature 245 274 8.1E-84 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 3.9E-173 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 SMART SM00382 59 230 4.5E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10495 42d021eb8198de18698767a025c7143e 354 Gene3D G3DSA:3.30.250.10 272 328 4.1E-25 T 28-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AM348_RS10495 42d021eb8198de18698767a025c7143e 354 ProSitePatterns PS00321 recA signature. 215 223 - T 28-03-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 Hamap MF_00268 Protein RecA [recA]. 7 331 51.089 T 28-03-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 Gene3D G3DSA:3.40.50.300 28 270 9.8E-47 T 28-03-2018 AM348_RS10495 42d021eb8198de18698767a025c7143e 354 SUPERFAMILY SSF52540 6 269 4.59E-66 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10495 42d021eb8198de18698767a025c7143e 354 SUPERFAMILY SSF54752 272 326 8.63E-21 T 28-03-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal AM348_RS09840 d6cdc2fc4b90352114516ad38e3c0fe7 148 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 7 144 5.2E-70 T 28-03-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE AM348_RS09840 d6cdc2fc4b90352114516ad38e3c0fe7 148 Gene3D G3DSA:3.90.1010.10 1 147 2.7E-43 T 28-03-2018 AM348_RS09840 d6cdc2fc4b90352114516ad38e3c0fe7 148 SUPERFAMILY SSF82649 3 144 1.02E-43 T 28-03-2018 AM348_RS09840 d6cdc2fc4b90352114516ad38e3c0fe7 148 Pfam PF02657 Fe-S metabolism associated domain 24 140 1.4E-37 T 28-03-2018 IPR003808 Fe-S metabolism associated domain, SufE-like AM348_RS21135 3dea083f94069805aa362bd7ec9847f3 369 Pfam PF03600 Citrate transporter 23 304 1.7E-27 T 28-03-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 AM348_RS06070 3dd0cbd60cf069b44e7bf5ac3648daf9 202 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 71 2.5E-15 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS06070 3dd0cbd60cf069b44e7bf5ac3648daf9 202 SUPERFAMILY SSF52833 1 100 7.77E-19 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS06070 3dd0cbd60cf069b44e7bf5ac3648daf9 202 Gene3D G3DSA:1.20.1050.10 87 202 7.2E-14 T 28-03-2018 AM348_RS06070 3dd0cbd60cf069b44e7bf5ac3648daf9 202 SUPERFAMILY SSF47616 73 199 1.99E-16 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS06070 3dd0cbd60cf069b44e7bf5ac3648daf9 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 97 192 1.4E-10 T 28-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM348_RS06070 3dd0cbd60cf069b44e7bf5ac3648daf9 202 Gene3D G3DSA:3.40.30.10 1 86 4.2E-17 T 28-03-2018 AM348_RS18110 b93d3c65b76edd740a4fc5ac851d7d67 193 PIRSF PIRSF006102 1 193 2.2E-61 T 28-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM348_RS18110 b93d3c65b76edd740a4fc5ac851d7d67 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 191 26.612 T 28-03-2018 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 AM348_RS18110 b93d3c65b76edd740a4fc5ac851d7d67 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 8.2E-61 T 28-03-2018 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 AM348_RS18110 b93d3c65b76edd740a4fc5ac851d7d67 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 1.6E-92 T 28-03-2018 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 SUPERFAMILY SSF50331 1 71 3.4E-21 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 Gene3D G3DSA:2.40.50.100 65 132 7.3E-21 T 28-03-2018 AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 73 140 6.1E-19 T 28-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 2 69 6.4E-24 T 28-03-2018 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 SUPERFAMILY SSF50331 73 140 5.35E-19 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 Gene3D G3DSA:2.40.50.100 1 64 3.4E-20 T 28-03-2018 AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 Pfam PF03459 TOBE domain 4 66 2.2E-16 T 28-03-2018 IPR005116 Transport-associated OB, type 1 AM348_RS10320 0c242dd851bc351fb33bdcfb9e53ddf4 142 Pfam PF03459 TOBE domain 76 136 5.0E-15 T 28-03-2018 IPR005116 Transport-associated OB, type 1 AM348_RS20775 5841e5fdb0a28fb2223dca6c75bf27ee 586 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 2.8E-80 T 28-03-2018 IPR003776 YcaO-like domain AM348_RS20775 5841e5fdb0a28fb2223dca6c75bf27ee 586 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 8.1E-169 T 28-03-2018 IPR003776 YcaO-like domain AM348_RS20220 7cbe7f6f95aeaa546e3b8d3d27fbe0e3 168 SUPERFAMILY SSF52833 32 158 1.07E-27 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS20220 7cbe7f6f95aeaa546e3b8d3d27fbe0e3 168 Pfam PF08534 Redoxin 42 146 1.1E-14 T 28-03-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 AM348_RS20220 7cbe7f6f95aeaa546e3b8d3d27fbe0e3 168 Gene3D G3DSA:3.40.30.10 29 156 5.1E-24 T 28-03-2018 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 Gene3D G3DSA:1.10.287.180 3 75 4.9E-33 T 28-03-2018 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 PIRSF PIRSF006092 1 158 1.6E-55 T 28-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 1.2E-59 T 28-03-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 28-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.827 T 28-03-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 SUPERFAMILY SSF46557 3 78 2.35E-29 T 28-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 SUPERFAMILY SSF54534 81 157 6.28E-25 T 28-03-2018 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 28-03-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 3.0E-29 T 28-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 Gene3D G3DSA:3.10.50.30 76 158 2.4E-28 T 28-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM348_RS08045 ed9e7612bfb06902b41e0ef602d6adf9 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 5.0E-32 T 28-03-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 AM348_RS04250 001bfbbf590caf25e1dd44f33e63d9ca 226 Gene3D G3DSA:2.40.160.40 21 226 1.8E-20 T 28-03-2018 AM348_RS04250 001bfbbf590caf25e1dd44f33e63d9ca 226 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 13 226 4.5E-61 T 28-03-2018 IPR009331 Oligogalacturonate-specific porin AM348_RS21600 09001b176c49d0a8b39cebbdffdd2599 462 TIGRFAM TIGR01319 glmL_fam: conserved hypothetical protein 6 461 3.4E-237 T 28-03-2018 IPR006230 Protein MutL AM348_RS21600 09001b176c49d0a8b39cebbdffdd2599 462 Pfam PF13941 MutL protein 4 456 1.7E-130 T 28-03-2018 IPR006230 Protein MutL AM348_RS21600 09001b176c49d0a8b39cebbdffdd2599 462 Gene3D G3DSA:3.30.420.40 1 274 3.1E-5 T 28-03-2018 AM348_RS21600 09001b176c49d0a8b39cebbdffdd2599 462 PIRSF PIRSF004729 1 462 1.0E-199 T 28-03-2018 IPR006230 Protein MutL AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 SUPERFAMILY SSF54637 171 313 2.04E-40 T 28-03-2018 IPR029069 HotDog domain AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 Gene3D G3DSA:3.40.630.30 15 161 8.6E-24 T 28-03-2018 AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 181 314 2.9E-48 T 28-03-2018 IPR012660 Thioesterase, putative AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 174 313 2.1E-48 T 28-03-2018 IPR012660 Thioesterase, putative AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 Pfam PF00583 Acetyltransferase (GNAT) family 43 138 8.2E-14 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 Gene3D G3DSA:3.10.129.10 162 316 3.4E-19 T 28-03-2018 AM348_RS04555 e43f5dd95776e8c967a9aa1631b2c8c3 329 SUPERFAMILY SSF55729 14 162 1.05E-28 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS04900 d5149374c0b661d3f307849c37a1a2a8 238 Gene3D G3DSA:3.40.50.1000 1 238 5.8E-23 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04900 d5149374c0b661d3f307849c37a1a2a8 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 106 201 5.8E-11 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS04900 d5149374c0b661d3f307849c37a1a2a8 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 15 207 5.7E-14 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04900 d5149374c0b661d3f307849c37a1a2a8 238 SUPERFAMILY SSF56784 10 238 3.44E-40 T 28-03-2018 IPR023214 HAD-like domain AM348_RS13925 34fea6021fcd34696aa7680f050071b0 474 PIRSF PIRSF000977 2 474 1.3E-199 T 28-03-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 AM348_RS13925 34fea6021fcd34696aa7680f050071b0 474 Gene3D G3DSA:3.30.420.10 1 200 2.5E-27 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS13925 34fea6021fcd34696aa7680f050071b0 474 Pfam PF08411 Exonuclease C-terminal 211 471 1.2E-101 T 28-03-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 AM348_RS13925 34fea6021fcd34696aa7680f050071b0 474 SMART SM00479 9 202 8.7E-4 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS13925 34fea6021fcd34696aa7680f050071b0 474 Pfam PF00929 Exonuclease 12 187 9.8E-32 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS13925 34fea6021fcd34696aa7680f050071b0 474 SUPERFAMILY SSF53098 9 473 1.3E-136 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS15040 1f31d215a25a05b5b14808b5c6730ff9 129 Gene3D G3DSA:3.40.50.2300 3 128 8.9E-36 T 28-03-2018 AM348_RS15040 1f31d215a25a05b5b14808b5c6730ff9 129 SMART SM00448 6 120 1.1E-34 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS15040 1f31d215a25a05b5b14808b5c6730ff9 129 SUPERFAMILY SSF52172 5 125 1.22E-35 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS15040 1f31d215a25a05b5b14808b5c6730ff9 129 Pfam PF00072 Response regulator receiver domain 9 120 8.0E-32 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS23470 ea3372b3369cc8ed79d79efd60a079b8 390 Gene3D G3DSA:1.20.1250.20 1 189 4.3E-26 T 28-03-2018 AM348_RS23470 ea3372b3369cc8ed79d79efd60a079b8 390 SUPERFAMILY SSF103473 3 380 2.62E-46 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS23470 ea3372b3369cc8ed79d79efd60a079b8 390 Pfam PF07690 Major Facilitator Superfamily 8 340 2.5E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS23470 ea3372b3369cc8ed79d79efd60a079b8 390 Gene3D G3DSA:1.20.1250.20 190 386 2.0E-12 T 28-03-2018 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 6.0E-54 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 6.0E-54 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 6.0E-54 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 6.0E-54 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 6.0E-54 T 28-03-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 Gene3D G3DSA:3.40.220.10 1 157 4.0E-31 T 28-03-2018 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 SUPERFAMILY SSF52949 1 184 3.53E-52 T 28-03-2018 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 6.8E-124 T 28-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 Gene3D G3DSA:3.40.630.10 170 500 1.1E-134 T 28-03-2018 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.492 T 28-03-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 7.7E-34 T 28-03-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 SUPERFAMILY SSF53187 180 496 3.14E-125 T 28-03-2018 AM348_RS02380 8c5b455449b610c136e974b8b681133c 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 28-03-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 AM348_RS19755 dd7468af9e8156ae18add9dffad8f102 191 SUPERFAMILY SSF47413 129 185 2.33E-10 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS19755 dd7468af9e8156ae18add9dffad8f102 191 SMART SM00530 134 189 0.0011 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS19755 dd7468af9e8156ae18add9dffad8f102 191 Pfam PF01381 Helix-turn-helix 142 185 8.4E-6 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS19755 dd7468af9e8156ae18add9dffad8f102 191 Gene3D G3DSA:1.10.260.40 122 188 2.5E-10 T 28-03-2018 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 18 220 8.6E-65 T 28-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 499 23.307 T 28-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 Pfam PF01256 Carbohydrate kinase 258 496 1.5E-78 T 28-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 SUPERFAMILY SSF64153 16 256 8.24E-64 T 28-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 PIRSF PIRSF017184 15 504 1.2E-168 T 28-03-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 438 448 - T 28-03-2018 IPR017953 Carbohydrate kinase, predicted, conserved site AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 22.937 T 28-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 Pfam PF03853 YjeF-related protein N-terminus 40 199 1.2E-43 T 28-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 232 499 3.2E-93 T 28-03-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 323 333 - T 28-03-2018 IPR017953 Carbohydrate kinase, predicted, conserved site AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 SUPERFAMILY SSF53613 232 498 1.33E-75 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 Gene3D G3DSA:3.40.1190.20 233 500 9.5E-52 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS02910 4dbb0df798d4aea9f7cf10538b5d4bf3 515 Gene3D G3DSA:3.40.50.10260 2 232 3.0E-64 T 28-03-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 Gene3D G3DSA:3.20.80.10 122 289 7.6E-21 T 28-03-2018 IPR011256 Regulatory factor, effector binding domain AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 SUPERFAMILY SSF55136 122 288 1.6E-50 T 28-03-2018 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 SMART SM00871 126 288 5.0E-11 T 28-03-2018 IPR010499 Bacterial transcription activator, effector binding AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 SUPERFAMILY SSF46689 57 109 2.42E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 Pfam PF12833 Helix-turn-helix domain 27 105 1.6E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 Pfam PF06445 GyrI-like small molecule binding domain 128 288 3.7E-19 T 28-03-2018 IPR029442 GyrI-like small molecule binding domain AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 Gene3D G3DSA:1.10.10.60 6 59 6.2E-13 T 28-03-2018 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 SUPERFAMILY SSF46689 6 55 1.04E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 3.4E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 3.4E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 SMART SM00342 21 104 1.9E-31 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS01720 96511f801ecb68d21399056e9db58c08 289 Gene3D G3DSA:1.10.10.60 60 121 2.6E-12 T 28-03-2018 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 Pfam PF00924 Mechanosensitive ion channel 72 267 4.8E-54 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 Gene3D G3DSA:3.30.70.100 179 273 2.3E-25 T 28-03-2018 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 28-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 SUPERFAMILY SSF82689 180 279 1.26E-28 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 Gene3D G3DSA:2.30.30.60 129 178 1.5E-15 T 28-03-2018 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 SUPERFAMILY SSF82861 28 112 1.96E-18 T 28-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 SUPERFAMILY SSF50182 114 179 2.48E-16 T 28-03-2018 IPR010920 LSM domain AM348_RS11645 2de3255539bc70ca6f77facc4ad54b0a 292 Pfam PF05552 Conserved TM helix 17 64 1.8E-11 T 28-03-2018 IPR008910 Conserved TM helix AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 SUPERFAMILY SSF46548 139 256 4.39E-19 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 315 51.088 T 28-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 Pfam PF13484 4Fe-4S double cluster binding domain 193 256 2.5E-19 T 28-03-2018 AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 Pfam PF08331 Domain of unknown function (DUF1730) 62 140 4.3E-23 T 28-03-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 Gene3D G3DSA:3.30.70.20 70 199 3.1E-4 T 28-03-2018 AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 348 7.0E-154 T 28-03-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 AM348_RS02915 75286cdc1be829fdd260deac04109ac6 379 Gene3D G3DSA:3.30.70.20 200 364 1.4E-10 T 28-03-2018 AM348_RS04675 34f1004a2b435e4b856126db410dc3e6 328 SUPERFAMILY SSF56112 6 327 1.9E-89 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS04675 34f1004a2b435e4b856126db410dc3e6 328 Pfam PF01636 Phosphotransferase enzyme family 32 256 6.0E-42 T 28-03-2018 IPR002575 Aminoglycoside phosphotransferase AM348_RS04675 34f1004a2b435e4b856126db410dc3e6 328 Gene3D G3DSA:3.90.1200.10 112 321 3.5E-18 T 28-03-2018 AM348_RS04675 34f1004a2b435e4b856126db410dc3e6 328 Gene3D G3DSA:3.30.200.20 5 107 1.3E-17 T 28-03-2018 AM348_RS04675 34f1004a2b435e4b856126db410dc3e6 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 45.203 T 28-03-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 AM348_RS06225 4396891b4e057f12203d1aed06248c40 312 Pfam PF00294 pfkB family carbohydrate kinase 6 306 9.7E-65 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS06225 4396891b4e057f12203d1aed06248c40 312 SUPERFAMILY SSF53613 5 310 1.06E-84 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS06225 4396891b4e057f12203d1aed06248c40 312 Gene3D G3DSA:3.40.1190.20 5 312 7.5E-67 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS06225 4396891b4e057f12203d1aed06248c40 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 258 271 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS21335 f0950c905956005193153a40f35d8bee 302 SUPERFAMILY SSF142338 11 295 3.4E-84 T 28-03-2018 AM348_RS21335 f0950c905956005193153a40f35d8bee 302 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 269 2.5E-98 T 28-03-2018 IPR010119 Gluconeogenesis factor AM348_RS21335 f0950c905956005193153a40f35d8bee 302 Gene3D G3DSA:3.40.50.10680 89 301 1.1E-39 T 28-03-2018 AM348_RS21335 f0950c905956005193153a40f35d8bee 302 Pfam PF01933 Uncharacterised protein family UPF0052 12 289 3.6E-76 T 28-03-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 AM348_RS21335 f0950c905956005193153a40f35d8bee 302 Hamap MF_00973 Gluconeogenesis factor. 8 300 32.102 T 28-03-2018 IPR010119 Gluconeogenesis factor AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 3.8E-10 T 28-03-2018 AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 Gene3D G3DSA:3.10.20.30 1 106 5.1E-32 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 SUPERFAMILY SSF46548 107 236 1.13E-39 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 4.6E-92 T 28-03-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 Gene3D G3DSA:1.10.1060.10 107 238 2.4E-29 T 28-03-2018 AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 1.2E-31 T 28-03-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21720 b268e863f8c7e7a85f438a087acb1b19 238 SUPERFAMILY SSF54292 1 106 6.35E-30 T 28-03-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Pfam PF00384 Molybdopterin oxidoreductase 107 533 3.6E-66 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 668 695 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 SUPERFAMILY SSF53706 50 623 4.32E-156 T 28-03-2018 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Gene3D G3DSA:2.40.40.20 624 739 1.4E-23 T 28-03-2018 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Gene3D G3DSA:3.40.228.10 190 394 2.2E-63 T 28-03-2018 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 SMART SM00926 49 104 2.8E-14 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 SUPERFAMILY SSF50692 595 709 4.52E-29 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Gene3D G3DSA:2.20.25.90 42 108 2.6E-17 T 28-03-2018 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Gene3D G3DSA:3.40.228.10 436 623 6.6E-8 T 28-03-2018 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Gene3D G3DSA:3.40.50.740 109 189 9.7E-13 T 28-03-2018 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 50 104 5.3E-10 T 28-03-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS22260 c35d16bab61a89b25992e51bafa0ead0 756 Pfam PF01568 Molydopterin dinucleotide binding domain 631 717 5.2E-18 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS16810 b10a6d156c716c5871e31d4b1877f80c 139 Pfam PF03724 META domain 28 131 6.3E-23 T 28-03-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ AM348_RS00080 e2511cef3c6d726c20e7bd5525f106bd 220 SUPERFAMILY SSF53335 23 207 5.84E-28 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS00080 e2511cef3c6d726c20e7bd5525f106bd 220 Pfam PF13649 Methyltransferase domain 65 154 4.0E-13 T 28-03-2018 AM348_RS00080 e2511cef3c6d726c20e7bd5525f106bd 220 Gene3D G3DSA:3.40.50.150 4 218 1.4E-24 T 28-03-2018 AM348_RS02975 7b7de3fc4f9ce35e1ef017cf69653837 131 Pfam PF02300 Fumarate reductase subunit C 3 128 2.2E-55 T 28-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM348_RS02975 7b7de3fc4f9ce35e1ef017cf69653837 131 PIRSF PIRSF000180 2 130 1.1E-60 T 28-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM348_RS02975 7b7de3fc4f9ce35e1ef017cf69653837 131 Gene3D G3DSA:1.20.1300.10 3 128 1.3E-56 T 28-03-2018 AM348_RS02975 7b7de3fc4f9ce35e1ef017cf69653837 131 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 29.61 T 28-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM348_RS02975 7b7de3fc4f9ce35e1ef017cf69653837 131 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 114 1.0E-48 T 28-03-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 AM348_RS02975 7b7de3fc4f9ce35e1ef017cf69653837 131 SUPERFAMILY SSF81343 2 131 3.05E-57 T 28-03-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS17040 082d7a3eebf5faa814cc9d64f93aa0c1 326 Gene3D G3DSA:2.160.10.10 46 144 2.0E-13 T 28-03-2018 AM348_RS17040 082d7a3eebf5faa814cc9d64f93aa0c1 326 Gene3D G3DSA:2.160.10.10 145 303 5.1E-11 T 28-03-2018 AM348_RS17040 082d7a3eebf5faa814cc9d64f93aa0c1 326 SUPERFAMILY SSF51161 5 313 6.74E-57 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS17040 082d7a3eebf5faa814cc9d64f93aa0c1 326 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 89 120 0.0022 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS06090 513e8ea0132e42f7d3e54b4b898a4521 512 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 300 311 - T 28-03-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 AM348_RS06090 513e8ea0132e42f7d3e54b4b898a4521 512 Gene3D G3DSA:3.40.605.10 17 284 1.2E-96 T 28-03-2018 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 AM348_RS06090 513e8ea0132e42f7d3e54b4b898a4521 512 Pfam PF00171 Aldehyde dehydrogenase family 33 498 7.0E-166 T 28-03-2018 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 AM348_RS06090 513e8ea0132e42f7d3e54b4b898a4521 512 Gene3D G3DSA:3.40.309.10 285 486 1.6E-65 T 28-03-2018 AM348_RS06090 513e8ea0132e42f7d3e54b4b898a4521 512 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 28-03-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 AM348_RS06090 513e8ea0132e42f7d3e54b4b898a4521 512 SUPERFAMILY SSF53720 20 505 2.75E-162 T 28-03-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 AM348_RS03525 bd5aa0d8246a3ad7206808406ece4f35 237 Gene3D G3DSA:3.40.50.1000 27 237 9.4E-42 T 28-03-2018 IPR023214 HAD-like domain AM348_RS03525 bd5aa0d8246a3ad7206808406ece4f35 237 TIGRFAM TIGR01672 AphA: HAD phosphatase, family IIIB 1 237 3.8E-122 T 28-03-2018 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM348_RS03525 bd5aa0d8246a3ad7206808406ece4f35 237 SUPERFAMILY SSF56784 31 237 1.45E-75 T 28-03-2018 IPR023214 HAD-like domain AM348_RS03525 bd5aa0d8246a3ad7206808406ece4f35 237 PIRSF PIRSF017818 1 237 3.3E-123 T 28-03-2018 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA GO:0003993|GO:0030288 KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 AM348_RS03525 bd5aa0d8246a3ad7206808406ece4f35 237 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 11 220 4.3E-51 T 28-03-2018 IPR005519 Acid phosphatase, class B-like AM348_RS12190 9822be2443b3b5b9f28e0519a405d871 204 Pfam PF07007 Lysozyme inhibitor LprI 128 197 3.2E-6 T 28-03-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AM348_RS23505 b2eb085131355348e394d6ac10020237 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 32.769 T 28-03-2018 IPR003791 Protein of unknown function UPF0178 AM348_RS23505 b2eb085131355348e394d6ac10020237 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 143 1.0E-49 T 28-03-2018 IPR003791 Protein of unknown function UPF0178 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 Gene3D G3DSA:3.40.50.720 1 144 6.0E-15 T 28-03-2018 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 PIRSF PIRSF015689 1 315 1.7E-133 T 28-03-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 SUPERFAMILY SSF55347 131 284 1.57E-65 T 28-03-2018 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 131 284 3.5E-62 T 28-03-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 Gene3D G3DSA:3.30.360.10 145 284 1.2E-66 T 28-03-2018 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 SMART SM00859 5 123 2.7E-15 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 308 3.8E-140 T 28-03-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 118 1.0E-12 T 28-03-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 316 145.088 T 28-03-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 AM348_RS00020 cfdee767e819bcaa1dd1ece642b075f5 316 SUPERFAMILY SSF51735 1 155 9.07E-30 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS18800 20f84b680b829d9b7e36d4d007e67113 343 SUPERFAMILY SSF144064 4 337 4.22E-127 T 28-03-2018 AM348_RS18800 20f84b680b829d9b7e36d4d007e67113 343 Pfam PF05171 Haemin-degrading HemS.ChuX domain 205 336 5.5E-40 T 28-03-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 AM348_RS18800 20f84b680b829d9b7e36d4d007e67113 343 Pfam PF05171 Haemin-degrading HemS.ChuX domain 27 155 9.5E-40 T 28-03-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 AM348_RS18800 20f84b680b829d9b7e36d4d007e67113 343 Gene3D G3DSA:3.40.1570.10 1 178 5.5E-50 T 28-03-2018 AM348_RS18800 20f84b680b829d9b7e36d4d007e67113 343 Gene3D G3DSA:3.40.1570.10 180 340 1.0E-52 T 28-03-2018 AM348_RS16885 0e86053ca0b65c3a71feef8a702ba962 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 63 74 1.9E-8 T 28-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM348_RS16885 0e86053ca0b65c3a71feef8a702ba962 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 52 62 1.9E-8 T 28-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM348_RS16885 0e86053ca0b65c3a71feef8a702ba962 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 91 103 1.9E-8 T 28-03-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 AM348_RS16885 0e86053ca0b65c3a71feef8a702ba962 139 Pfam PF00717 Peptidase S24-like 58 119 3.3E-11 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS16885 0e86053ca0b65c3a71feef8a702ba962 139 Gene3D G3DSA:2.10.109.10 25 139 1.8E-23 T 28-03-2018 AM348_RS16885 0e86053ca0b65c3a71feef8a702ba962 139 SUPERFAMILY SSF51306 15 136 3.14E-30 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS19045 b05c30a3d66660c4f048d901b65aa460 186 Pfam PF09335 SNARE associated Golgi protein 19 135 4.0E-26 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS05775 3e37d3f4600ea155d92ee8a27febab3b 463 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 375 395 - T 28-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM348_RS05775 3e37d3f4600ea155d92ee8a27febab3b 463 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 29 457 4.3E-140 T 28-03-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 AM348_RS05775 3e37d3f4600ea155d92ee8a27febab3b 463 Pfam PF00860 Permease family 34 426 1.4E-109 T 28-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS18010 9785a6d10c75a84baa4e958b963bc0dd 280 Gene3D G3DSA:3.90.1200.10 83 273 2.2E-9 T 28-03-2018 AM348_RS18010 9785a6d10c75a84baa4e958b963bc0dd 280 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 12 256 1.4E-74 T 28-03-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 AM348_RS18010 9785a6d10c75a84baa4e958b963bc0dd 280 SUPERFAMILY SSF56112 7 256 1.01E-28 T 28-03-2018 IPR011009 Protein kinase-like domain AM348_RS02065 f271c86d2e5e054457aaf5c883fb1c0c 395 SUPERFAMILY SSF103473 15 386 1.28E-28 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS02065 f271c86d2e5e054457aaf5c883fb1c0c 395 Gene3D G3DSA:1.20.1250.20 210 394 2.3E-13 T 28-03-2018 AM348_RS02065 f271c86d2e5e054457aaf5c883fb1c0c 395 Gene3D G3DSA:1.20.1250.20 10 199 7.2E-10 T 28-03-2018 AM348_RS02065 f271c86d2e5e054457aaf5c883fb1c0c 395 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 23 380 8.7E-126 T 28-03-2018 IPR010645 Uncharacterised MFS-type transporter YbfB AM348_RS05905 07393d3636d1f6db0f85158038f3fc58 461 Pfam PF04932 O-Antigen ligase 214 388 3.0E-9 T 28-03-2018 IPR007016 O-antigen ligase-related AM348_RS10400 cce08c447a581779de88561bd9b39c20 79 Gene3D G3DSA:2.10.260.10 28 79 5.4E-4 T 28-03-2018 AM348_RS10400 cce08c447a581779de88561bd9b39c20 79 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 17 75 1.4E-18 T 28-03-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Gene3D G3DSA:3.40.228.10 182 439 7.3E-52 T 28-03-2018 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 49 824 0.0 T 28-03-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Gene3D G3DSA:2.40.40.20 662 818 3.0E-30 T 28-03-2018 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Gene3D G3DSA:3.40.228.10 609 661 7.9E-9 T 28-03-2018 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Pfam PF01568 Molydopterin dinucleotide binding domain 680 801 9.9E-20 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Pfam PF00384 Molybdopterin oxidoreductase 92 564 4.7E-85 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 SUPERFAMILY SSF53706 51 665 2.22E-160 T 28-03-2018 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 506 523 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 SUPERFAMILY SSF50692 673 824 1.04E-40 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Gene3D G3DSA:3.90.55.10 529 608 2.0E-18 T 28-03-2018 AM348_RS13085 0afc3b3ced89eae695aec8dac47c8c39 832 Gene3D G3DSA:3.90.55.10 43 129 1.4E-14 T 28-03-2018 AM348_RS13570 495f18cf74cdb11ebe67860c8bc2beec 371 Gene3D G3DSA:1.20.1600.10 35 327 1.0E-34 T 28-03-2018 AM348_RS13570 495f18cf74cdb11ebe67860c8bc2beec 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 294 4.5E-17 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS13570 495f18cf74cdb11ebe67860c8bc2beec 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 362 8.1E-57 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS13570 495f18cf74cdb11ebe67860c8bc2beec 371 SUPERFAMILY SSF111369 52 299 5.1E-28 T 28-03-2018 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 SMART SM00535 21 149 1.1E-59 T 28-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 5.4E-74 T 28-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 1.1E-13 T 28-03-2018 IPR014720 Double-stranded RNA-binding domain AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 28-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 Gene3D G3DSA:1.10.1520.10 5 148 2.1E-44 T 28-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 SMART SM00358 156 224 1.6E-21 T 28-03-2018 IPR014720 Double-stranded RNA-binding domain AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.323 T 28-03-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 Gene3D G3DSA:3.30.160.20 149 226 8.1E-20 T 28-03-2018 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 Pfam PF14622 Ribonuclease-III-like 20 141 9.8E-34 T 28-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 SUPERFAMILY SSF69065 5 159 2.79E-50 T 28-03-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 AM348_RS11290 5b4e9b4bd793a9f3720823cc7317d79f 226 SUPERFAMILY SSF54768 109 223 2.04E-26 T 28-03-2018 AM348_RS11960 50f66ddf2afbdb768b52b24e22e1279c 277 SUPERFAMILY SSF161098 16 264 7.29E-58 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS11960 50f66ddf2afbdb768b52b24e22e1279c 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 271 1.4E-113 T 28-03-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 AM348_RS11960 50f66ddf2afbdb768b52b24e22e1279c 277 Gene3D G3DSA:1.10.3720.10 12 275 2.7E-47 T 28-03-2018 AM348_RS11960 50f66ddf2afbdb768b52b24e22e1279c 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 269 7.9E-115 T 28-03-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 AM348_RS11960 50f66ddf2afbdb768b52b24e22e1279c 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 2.0E-33 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS12060 5d9c610b8e46a3baa93814150b99eee0 89 SUPERFAMILY SSF159871 3 88 4.84E-18 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS12060 5d9c610b8e46a3baa93814150b99eee0 89 Pfam PF07338 Protein of unknown function (DUF1471) 34 88 2.7E-9 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS12060 5d9c610b8e46a3baa93814150b99eee0 89 Gene3D G3DSA:3.30.1660.10 22 88 2.0E-15 T 28-03-2018 IPR025543 Dodecin-like AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.4E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 SUPERFAMILY SSF46894 119 216 3.12E-26 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 SUPERFAMILY SSF52172 1 118 2.42E-34 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-21 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 Gene3D G3DSA:3.40.50.2300 1 120 6.2E-30 T 28-03-2018 AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 SMART SM00448 1 112 3.1E-37 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 SMART SM00862 145 216 4.6E-24 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS08845 685d40bf3d47f29065ce4ae253edd5b3 219 Gene3D G3DSA:1.10.10.10 121 219 2.0E-25 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07665 01688f1a24344965b9d765e3ef2884f0 483 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 5.9E-113 T 28-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS07665 01688f1a24344965b9d765e3ef2884f0 483 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 414 434 - T 28-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS07665 01688f1a24344965b9d765e3ef2884f0 483 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 471 1.5E-226 T 28-03-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0031402|GO:0071436 AM348_RS07665 01688f1a24344965b9d765e3ef2884f0 483 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 28-03-2018 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 AM348_RS07665 01688f1a24344965b9d765e3ef2884f0 483 Pfam PF00474 Sodium:solute symporter family 36 432 2.1E-139 T 28-03-2018 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS08690 52eb8e3c05e04d9ce993dac68ff0b409 205 SMART SM01207 10 185 1.9E-85 T 28-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM348_RS08690 52eb8e3c05e04d9ce993dac68ff0b409 205 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 5.3E-50 T 28-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM348_RS08690 52eb8e3c05e04d9ce993dac68ff0b409 205 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 195 3.7E-82 T 28-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM348_RS08690 52eb8e3c05e04d9ce993dac68ff0b409 205 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.472 T 28-03-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 Pfam PF13091 PLD-like domain 134 244 4.0E-11 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 Pfam PF13091 PLD-like domain 331 442 8.7E-23 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 SUPERFAMILY SSF56024 274 473 1.82E-47 T 28-03-2018 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 51.625 T 28-03-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 3.3E-221 T 28-03-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 22 59 1.1E-6 T 28-03-2018 IPR027379 Cardiolipin synthase N-terminal AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 SUPERFAMILY SSF56024 66 315 1.19E-44 T 28-03-2018 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 SMART SM00155 399 426 8.2E-6 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 SMART SM00155 219 246 2.1E-4 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 Gene3D G3DSA:3.30.870.10 316 476 2.5E-27 T 28-03-2018 AM348_RS16010 dae25a357c907cc992acb84799736fc9 486 Gene3D G3DSA:3.30.870.10 99 288 2.6E-26 T 28-03-2018 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 SUPERFAMILY SSF56024 261 459 6.28E-34 T 28-03-2018 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 SUPERFAMILY SSF56024 31 208 3.14E-37 T 28-03-2018 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 Gene3D G3DSA:3.30.870.10 14 221 1.5E-26 T 28-03-2018 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 SMART SM00155 386 413 5.3E-5 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 SMART SM00155 147 174 0.19 T 28-03-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 Pfam PF13091 PLD-like domain 62 206 2.3E-12 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 Pfam PF13091 PLD-like domain 296 438 1.4E-25 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 Hamap MF_01918 Cardiolipin synthase C [clsC]. 62 495 76.019 T 28-03-2018 IPR030871 Cardiolipin synthase C GO:0032049|GO:0090483 AM348_RS20060 f6bb942e549c5c767ba1bfb60508c8f6 495 Gene3D G3DSA:3.30.870.10 282 480 1.1E-24 T 28-03-2018 AM348_RS08000 67adc769566f7273a5fcf7e53ddbb2b7 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 44.362 T 28-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS08000 67adc769566f7273a5fcf7e53ddbb2b7 419 SUPERFAMILY SSF55205 1 418 2.94E-147 T 28-03-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 AM348_RS08000 67adc769566f7273a5fcf7e53ddbb2b7 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 7.4E-185 T 28-03-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS08000 67adc769566f7273a5fcf7e53ddbb2b7 419 Gene3D G3DSA:3.65.10.10 220 418 5.9E-49 T 28-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM348_RS08000 67adc769566f7273a5fcf7e53ddbb2b7 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 6.4E-131 T 28-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM348_RS08000 67adc769566f7273a5fcf7e53ddbb2b7 419 Gene3D G3DSA:3.65.10.10 21 219 1.2E-51 T 28-03-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 AM348_RS20055 21cb1e5d853240ccce5b8b72be33a753 386 Pfam PF01757 Acyltransferase family 10 357 1.3E-31 T 28-03-2018 IPR002656 Acyltransferase 3 GO:0016747 AM348_RS20055 21cb1e5d853240ccce5b8b72be33a753 386 Hamap MF_01066 Glucans biosynthesis protein C [mdoC]. 2 375 38.034 T 28-03-2018 IPR023723 Glucan biosynthesis protein C GO:0016741 AM348_RS17915 8c88b3920637c37ae745fc134dcaff12 334 Pfam PF00174 Oxidoreductase molybdopterin binding domain 108 267 7.1E-29 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS17915 8c88b3920637c37ae745fc134dcaff12 334 SUPERFAMILY SSF56524 76 330 3.4E-94 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS17915 8c88b3920637c37ae745fc134dcaff12 334 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 5 334 54.894 T 28-03-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 AM348_RS17915 8c88b3920637c37ae745fc134dcaff12 334 Gene3D G3DSA:3.90.420.10 64 334 7.3E-63 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 Gene3D G3DSA:3.20.20.450 466 725 5.0E-84 T 28-03-2018 IPR001633 EAL domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 296 458 2.5E-41 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 Pfam PF00990 Diguanylate cyclase, GGDEF domain 300 457 1.0E-48 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 Gene3D G3DSA:3.30.70.270 293 465 1.2E-58 T 28-03-2018 AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 SUPERFAMILY SSF141868 478 718 7.06E-79 T 28-03-2018 IPR001633 EAL domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 SMART SM00052 472 713 1.7E-90 T 28-03-2018 IPR001633 EAL domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 SMART SM00267 289 462 2.5E-58 T 28-03-2018 IPR000160 GGDEF domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 SUPERFAMILY SSF55073 305 464 1.1E-47 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 Pfam PF00563 EAL domain 478 708 2.8E-66 T 28-03-2018 IPR001633 EAL domain AM348_RS10235 f26bf103ee28d756e8697c97974dad29 730 SUPERFAMILY SSF158472 232 282 9.68E-6 T 28-03-2018 AM348_RS03240 eb175b299bb607d15f1c91dab829729c 149 SUPERFAMILY SSF54593 2 139 2.21E-29 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS03240 eb175b299bb607d15f1c91dab829729c 149 Gene3D G3DSA:3.10.180.10 2 149 1.9E-21 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS03240 eb175b299bb607d15f1c91dab829729c 149 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 138 3.3E-6 T 28-03-2018 IPR028973 PhnB-like AM348_RS11420 85e69f349f8567c05c0c8e94580487bc 831 Pfam PF13953 PapC C-terminal domain 751 815 8.8E-18 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS11420 85e69f349f8567c05c0c8e94580487bc 831 SUPERFAMILY SSF141729 63 175 2.49E-30 T 28-03-2018 AM348_RS11420 85e69f349f8567c05c0c8e94580487bc 831 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 310 320 - T 28-03-2018 IPR018030 Fimbrial membrane usher, conserved site AM348_RS11420 85e69f349f8567c05c0c8e94580487bc 831 Pfam PF13954 PapC N-terminal domain 38 185 1.0E-42 T 28-03-2018 IPR025885 PapC, N-terminal domain GO:0005515 AM348_RS11420 85e69f349f8567c05c0c8e94580487bc 831 Pfam PF00577 Outer membrane usher protein 199 742 7.7E-195 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS18690 bd4e8fe8335c72d376d306dd0255cf7a 136 Pfam PF03061 Thioesterase superfamily 50 127 7.6E-16 T 28-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM348_RS18690 bd4e8fe8335c72d376d306dd0255cf7a 136 Gene3D G3DSA:3.10.129.10 1 136 1.2E-28 T 28-03-2018 AM348_RS18690 bd4e8fe8335c72d376d306dd0255cf7a 136 SUPERFAMILY SSF54637 1 133 1.57E-30 T 28-03-2018 IPR029069 HotDog domain AM348_RS18690 bd4e8fe8335c72d376d306dd0255cf7a 136 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 134 1.1E-45 T 28-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM348_RS18690 bd4e8fe8335c72d376d306dd0255cf7a 136 Hamap MF_01936 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [menI]. 1 136 47.187 T 28-03-2018 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI GO:0009234|GO:0061522 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 Pfam PF13500 AAA domain 5 229 1.4E-48 T 28-03-2018 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 Gene3D G3DSA:3.40.50.10750 529 682 2.8E-64 T 28-03-2018 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 Pfam PF07085 DRTGG domain 233 344 9.5E-30 T 28-03-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 1.5E-127 T 28-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 SUPERFAMILY SSF53659 392 709 6.17E-94 T 28-03-2018 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 Gene3D G3DSA:3.40.1390.20 231 366 3.8E-28 T 28-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 SUPERFAMILY SSF52540 4 240 3.03E-27 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 2.4E-137 T 28-03-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 PIRSF PIRSF006107 1 713 0.0 T 28-03-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 Gene3D G3DSA:3.40.50.300 1 230 1.0E-27 T 28-03-2018 AM348_RS12535 830bb32023a8d1ee53138116a6a3aadc 713 SUPERFAMILY SSF75138 229 353 1.7E-25 T 28-03-2018 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 449 1.7E-138 T 28-03-2018 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 Gene3D G3DSA:3.30.70.260 285 365 7.0E-20 T 28-03-2018 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 Gene3D G3DSA:3.40.1160.10 1 284 3.5E-63 T 28-03-2018 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 Pfam PF00696 Amino acid kinase family 4 277 1.4E-48 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 Gene3D G3DSA:3.30.70.260 369 449 7.8E-14 T 28-03-2018 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 28-03-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 PIRSF PIRSF000726 2 449 4.1E-163 T 28-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 SUPERFAMILY SSF55021 297 393 1.83E-16 T 28-03-2018 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 Pfam PF01842 ACT domain 323 378 2.2E-6 T 28-03-2018 IPR002912 ACT domain AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 SUPERFAMILY SSF53633 4 292 7.07E-76 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 449 6.1E-149 T 28-03-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 AM348_RS03675 6dbb63788dc6813bf039cf21f8c8862d 449 SUPERFAMILY SSF55021 372 448 2.92E-13 T 28-03-2018 AM348_RS14975 ee0acb71b28c274a004e87759612924b 142 Pfam PF00582 Universal stress protein family 3 138 1.1E-17 T 28-03-2018 IPR006016 UspA GO:0006950 AM348_RS14975 ee0acb71b28c274a004e87759612924b 142 PIRSF PIRSF006276 1 141 4.2E-45 T 28-03-2018 IPR006015 Universal stress protein A AM348_RS14975 ee0acb71b28c274a004e87759612924b 142 SUPERFAMILY SSF52402 3 138 2.26E-26 T 28-03-2018 AM348_RS14975 ee0acb71b28c274a004e87759612924b 142 Gene3D G3DSA:3.40.50.620 2 142 1.1E-20 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS18940 6c87e499381f1c65b5c3e306322c1394 252 Gene3D G3DSA:3.20.20.370 1 252 3.7E-77 T 28-03-2018 AM348_RS18940 6c87e499381f1c65b5c3e306322c1394 252 SUPERFAMILY SSF88713 1 251 3.78E-74 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS18940 6c87e499381f1c65b5c3e306322c1394 252 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 249 40.214 T 28-03-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 AM348_RS18940 6c87e499381f1c65b5c3e306322c1394 252 Pfam PF04794 YdjC-like protein 5 240 1.6E-58 T 28-03-2018 IPR006879 Carbohydrate deacetylase YdjC-like AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 1.9E-51 T 28-03-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 Pfam PF03061 Thioesterase superfamily 20 103 9.4E-19 T 28-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 1.7E-49 T 28-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 SUPERFAMILY SSF54637 2 133 3.81E-40 T 28-03-2018 IPR029069 HotDog domain AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 PIRSF PIRSF003230 1 134 8.0E-49 T 28-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 11 28 - T 28-03-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 AM348_RS21565 6e6da3b9a02cc461e60ed255e774bcea 134 Gene3D G3DSA:3.10.129.10 1 134 2.5E-37 T 28-03-2018 AM348_RS02255 7a377e44bed35054dcbe8265908b1f0b 76 Pfam PF01381 Helix-turn-helix 15 65 1.8E-16 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS02255 7a377e44bed35054dcbe8265908b1f0b 76 Gene3D G3DSA:1.10.260.40 1 74 2.3E-19 T 28-03-2018 AM348_RS02255 7a377e44bed35054dcbe8265908b1f0b 76 SMART SM00530 14 69 2.7E-13 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS02255 7a377e44bed35054dcbe8265908b1f0b 76 SUPERFAMILY SSF47413 5 72 2.28E-17 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 Pfam PF00196 Bacterial regulatory proteins, luxR family 835 890 1.5E-19 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 SMART SM00421 833 890 5.3E-21 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 Gene3D G3DSA:3.40.50.300 17 304 4.1E-5 T 28-03-2018 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 ProSitePatterns PS00622 LuxR-type HTH domain signature. 850 877 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 Gene3D G3DSA:1.25.40.10 436 808 1.4E-44 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 899 40.16 T 28-03-2018 IPR023768 Transcriptional regulator HTH-type, MalT AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 SUPERFAMILY SSF52540 6 226 2.84E-7 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 836 850 1.2E-10 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 850 866 1.2E-10 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 866 878 1.2E-10 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 Gene3D G3DSA:1.10.10.10 833 893 4.0E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 SUPERFAMILY SSF46894 827 892 8.84E-17 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS06940 6c63e6701cd5afbb2a046b0731b1855e 901 SUPERFAMILY SSF48452 443 803 5.69E-152 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS00660 044876342d040759427d53fa76149178 181 PIRSF PIRSF011484 1 180 1.0E-66 T 28-03-2018 IPR009822 YaeQ AM348_RS00660 044876342d040759427d53fa76149178 181 SMART SM01322 1 176 1.1E-110 T 28-03-2018 IPR009822 YaeQ AM348_RS00660 044876342d040759427d53fa76149178 181 Gene3D G3DSA:3.10.640.10 2 177 2.7E-74 T 28-03-2018 AM348_RS00660 044876342d040759427d53fa76149178 181 Pfam PF07152 YaeQ protein 1 173 1.6E-71 T 28-03-2018 IPR009822 YaeQ AM348_RS00660 044876342d040759427d53fa76149178 181 SUPERFAMILY SSF52980 4 178 4.02E-69 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS07150 115220a710e70e0f430fbf130459986b 393 Hamap MF_01044 Protein TsgA [tsgA]. 1 388 30.386 T 28-03-2018 IPR023528 Major facilitator superfamily transporter, TsgA AM348_RS07150 115220a710e70e0f430fbf130459986b 393 Gene3D G3DSA:1.20.1250.20 1 198 1.2E-20 T 28-03-2018 AM348_RS07150 115220a710e70e0f430fbf130459986b 393 SUPERFAMILY SSF103473 4 386 4.05E-39 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS07150 115220a710e70e0f430fbf130459986b 393 Pfam PF07690 Major Facilitator Superfamily 14 320 2.8E-22 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS07150 115220a710e70e0f430fbf130459986b 393 Gene3D G3DSA:1.20.1250.20 199 388 6.8E-15 T 28-03-2018 AM348_RS14775 7f6a319cf46aaf0aeb22c90d25394597 112 Pfam PF05521 Phage head-tail joining protein 7 106 8.7E-22 T 28-03-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor AM348_RS14775 7f6a319cf46aaf0aeb22c90d25394597 112 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 7 107 2.7E-14 T 28-03-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 Pfam PF00459 Inositol monophosphatase family 2 233 1.5E-48 T 28-03-2018 IPR000760 Inositol monophosphatase-like GO:0046854 AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 Gene3D G3DSA:3.40.190.80 149 245 3.4E-35 T 28-03-2018 AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 244 4.3E-111 T 28-03-2018 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 Gene3D G3DSA:3.30.540.10 1 148 9.1E-40 T 28-03-2018 AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 28-03-2018 IPR020583 Inositol monophosphatase, metal-binding site AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 204 218 - T 28-03-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 AM348_RS02690 6ea22ad1d0da1da6b773ffd907130b1b 246 SUPERFAMILY SSF56655 1 243 4.84E-75 T 28-03-2018 AM348_RS04545 3e668ac5f3ffbdcc015b7244c8fa532e 103 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 22 93 1.1E-20 T 28-03-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 Gene3D G3DSA:3.30.428.10 45 164 1.1E-50 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 Gene3D G3DSA:3.30.428.10 165 345 7.7E-60 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 176 8.0E-70 T 28-03-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 PIRSF PIRSF000808 1 341 8.8E-128 T 28-03-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 SUPERFAMILY SSF54197 179 345 3.4E-59 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 345 1.7E-72 T 28-03-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 SUPERFAMILY SSF54197 3 177 5.27E-72 T 28-03-2018 IPR011146 HIT-like domain GO:0003824 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 347 1.3E-211 T 28-03-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM348_RS21465 302f75d7b64bacc6e9529c5a9d78284a 348 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 28-03-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-70370 AM348_RS08450 98fb4319b266bd267951486ca4136026 332 Gene3D G3DSA:3.40.50.720 1 147 2.7E-37 T 28-03-2018 AM348_RS08450 98fb4319b266bd267951486ca4136026 332 SUPERFAMILY SSF55347 127 291 3.27E-24 T 28-03-2018 AM348_RS08450 98fb4319b266bd267951486ca4136026 332 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 1.2E-27 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS08450 98fb4319b266bd267951486ca4136026 332 SUPERFAMILY SSF51735 2 152 1.21E-44 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS08450 98fb4319b266bd267951486ca4136026 332 Gene3D G3DSA:3.30.360.10 148 325 7.2E-27 T 28-03-2018 AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 SUPERFAMILY SSF52518 2 177 1.97E-43 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 Gene3D G3DSA:3.40.50.970 1 189 7.3E-43 T 28-03-2018 AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 3.2E-41 T 28-03-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 SUPERFAMILY SSF52467 182 352 6.41E-44 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 Gene3D G3DSA:3.40.50.1220 190 338 1.6E-34 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 3.6E-40 T 28-03-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 Gene3D G3DSA:3.40.50.970 339 533 6.4E-42 T 28-03-2018 AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 SUPERFAMILY SSF52518 357 557 2.68E-59 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 319 2.7E-30 T 28-03-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 AM348_RS13525 503999de86b80d145f8b6a724ff30d95 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 28-03-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.172 T 28-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 SUPERFAMILY SSF56059 1 238 1.17E-80 T 28-03-2018 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 28-03-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 Gene3D G3DSA:3.30.470.20 96 239 1.6E-51 T 28-03-2018 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 Gene3D G3DSA:3.30.1490.20 21 95 7.4E-25 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 Gene3D G3DSA:3.40.50.261 240 385 2.5E-42 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 Pfam PF00549 CoA-ligase 262 382 1.1E-24 T 28-03-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 PIRSF PIRSF001554 1 388 2.2E-153 T 28-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.6E-182 T 28-03-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 Pfam PF08442 ATP-grasp domain 2 203 2.1E-82 T 28-03-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 AM348_RS21705 91df8590d2cfcddc11777ba4738cb997 388 SUPERFAMILY SSF52210 239 385 3.66E-53 T 28-03-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.3E-37 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.3E-37 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.3E-37 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.3E-37 T 28-03-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 Pfam PF00155 Aminotransferase class I and II 27 392 4.2E-85 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 Gene3D G3DSA:3.90.1150.10 1 74 1.3E-11 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 Gene3D G3DSA:3.90.1150.10 286 397 1.4E-26 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 28-03-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 Gene3D G3DSA:3.40.640.10 75 285 2.4E-29 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS03530 ae207362e80a9cf0e829e22d1702227f 397 SUPERFAMILY SSF53383 2 396 1.56E-117 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS19410 f584d94bb1b3cb458265f2095563f1ac 373 SMART SM00558 92 215 4.2E-11 T 28-03-2018 IPR003347 JmjC domain AM348_RS19410 f584d94bb1b3cb458265f2095563f1ac 373 Pfam PF08007 Cupin superfamily protein 10 310 3.5E-104 T 28-03-2018 IPR003347 JmjC domain AM348_RS19410 f584d94bb1b3cb458265f2095563f1ac 373 Gene3D G3DSA:2.60.120.650 2 209 1.2E-28 T 28-03-2018 AM348_RS19410 f584d94bb1b3cb458265f2095563f1ac 373 SUPERFAMILY SSF51197 7 292 8.1E-75 T 28-03-2018 AM348_RS03550 d6e1df9cdc729cc4e3c7943ca4889248 80 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 64 2.7E-27 T 28-03-2018 IPR014318 Phage shock protein, PspG AM348_RS03550 d6e1df9cdc729cc4e3c7943ca4889248 80 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 63 3.1E-26 T 28-03-2018 IPR014318 Phage shock protein, PspG AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 SUPERFAMILY SSF51395 446 1203 3.71E-251 T 28-03-2018 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Pfam PF01645 Conserved region in glutamate synthase 805 1168 2.3E-158 T 28-03-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Gene3D G3DSA:3.20.20.70 791 1220 3.0E-146 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Gene3D G3DSA:2.160.20.60 1223 1497 8.7E-96 T 28-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Gene3D G3DSA:3.60.20.10 24 449 1.2E-143 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Pfam PF01493 GXGXG motif 1248 1431 3.0E-75 T 28-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Pfam PF00310 Glutamine amidotransferases class-II 24 437 6.8E-177 T 28-03-2018 IPR017932 Glutamine amidotransferase type 2 domain AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 SUPERFAMILY SSF56235 24 441 2.57E-149 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Gene3D G3DSA:3.20.20.70 450 790 2.7E-82 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 Pfam PF04898 Glutamate synthase central domain 469 749 3.5E-105 T 28-03-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 AM348_RS07885 e2cc2c076effea6e1b9949723157366d 1498 SUPERFAMILY SSF69336 1223 1477 9.29E-88 T 28-03-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 AM348_RS13955 3ef15fc893ccbd4adb2f3fe627865063 352 Pfam PF04632 Fusaric acid resistance protein family 20 338 5.6E-17 T 28-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 AM348_RS01885 20e34459c686114c58fd71b14cd2098d 447 Pfam PF02378 Phosphotransferase system, EIIC 36 359 7.3E-56 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS01885 20e34459c686114c58fd71b14cd2098d 447 PIRSF PIRSF006351 9 444 5.1E-140 T 28-03-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS01885 20e34459c686114c58fd71b14cd2098d 447 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 20 434 2.5E-111 T 28-03-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 AM348_RS02795 8d49ada5485ba1b30e7455cf837986ea 155 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 53 69 - T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS02795 8d49ada5485ba1b30e7455cf837986ea 155 Gene3D G3DSA:3.40.930.10 2 151 9.2E-35 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS02795 8d49ada5485ba1b30e7455cf837986ea 155 SUPERFAMILY SSF55804 6 149 7.46E-37 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS02795 8d49ada5485ba1b30e7455cf837986ea 155 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 149 4.8E-33 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS14785 e21a3fc67ee92edf80d789e42edeb644 115 Pfam PF11367 Protein of unknown function (DUF3168) 11 90 5.4E-7 T 28-03-2018 IPR021508 Tail completion protein AM348_RS17185 b5c3cb1ffc04f0b2cc32c3a8520bfd94 149 Pfam PF04657 Putative inner membrane exporter, YdcZ 7 143 1.6E-20 T 28-03-2018 IPR006750 Putative inner membrane exporter, YdcZ AM348_RS22315 2e55d067219d7d7e0dddb1c610a02ee7 65 Pfam PF04328 Selenoprotein, putative 5 65 1.1E-30 T 28-03-2018 IPR007423 Selenoprotein, putative AM348_RS17210 203d9b1963d08e2694af3d4850d17d63 353 Pfam PF13360 PQQ-like domain 192 303 3.4E-4 T 28-03-2018 IPR002372 Pyrrolo-quinoline quinone repeat AM348_RS17210 203d9b1963d08e2694af3d4850d17d63 353 SUPERFAMILY SSF51004 33 337 3.66E-39 T 28-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM348_RS17210 203d9b1963d08e2694af3d4850d17d63 353 Gene3D G3DSA:2.130.10.10 31 353 4.5E-52 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS15825 eb0c41cdf7fcc7cb6f7da068c777c0e0 419 Gene3D G3DSA:3.40.190.10 159 371 2.7E-40 T 28-03-2018 AM348_RS15825 eb0c41cdf7fcc7cb6f7da068c777c0e0 419 SUPERFAMILY SSF53850 44 277 4.07E-32 T 28-03-2018 AM348_RS15825 eb0c41cdf7fcc7cb6f7da068c777c0e0 419 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 8 26 6.2E-4 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS15825 eb0c41cdf7fcc7cb6f7da068c777c0e0 419 Gene3D G3DSA:3.40.190.10 41 153 2.5E-9 T 28-03-2018 AM348_RS15825 eb0c41cdf7fcc7cb6f7da068c777c0e0 419 Pfam PF13379 NMT1-like family 40 290 3.8E-104 T 28-03-2018 AM348_RS14915 91cbb79b967521933ef1dab750a96947 111 Pfam PF13992 YecR-like lipoprotein 26 98 8.6E-27 T 28-03-2018 IPR025731 YecR-like lipoprotein AM348_RS04585 24b3985ef8114d03fd39a09b8bfd1379 477 Gene3D G3DSA:1.20.1250.20 27 232 7.2E-24 T 28-03-2018 AM348_RS04585 24b3985ef8114d03fd39a09b8bfd1379 477 SUPERFAMILY SSF103473 32 465 1.29E-52 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS04585 24b3985ef8114d03fd39a09b8bfd1379 477 Pfam PF00083 Sugar (and other) transporter 73 452 1.7E-29 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS04585 24b3985ef8114d03fd39a09b8bfd1379 477 Gene3D G3DSA:1.20.1250.20 251 475 3.9E-17 T 28-03-2018 AM348_RS05860 13b81d616a45d33a55bc4000f8d3d685 221 TIGRFAM TIGR00608 radc: DNA repair protein RadC 8 221 1.8E-90 T 28-03-2018 IPR001405 RadC protein AM348_RS05860 13b81d616a45d33a55bc4000f8d3d685 221 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 170 175 - T 28-03-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site AM348_RS05860 13b81d616a45d33a55bc4000f8d3d685 221 Hamap MF_00018 UPF0758 protein YicR [yicR]. 1 221 53.072 T 28-03-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily AM348_RS05860 13b81d616a45d33a55bc4000f8d3d685 221 Gene3D G3DSA:3.40.140.10 96 221 1.3E-47 T 28-03-2018 AM348_RS05860 13b81d616a45d33a55bc4000f8d3d685 221 SUPERFAMILY SSF47781 13 84 3.02E-8 T 28-03-2018 IPR010994 RuvA domain 2-like AM348_RS05860 13b81d616a45d33a55bc4000f8d3d685 221 Pfam PF04002 RadC-like JAB domain 102 219 9.1E-45 T 28-03-2018 IPR025657 RadC-like JAB domain AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 2.7E-75 T 28-03-2018 IPR010650 PrkA C-terminal domain AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 SUPERFAMILY SSF52540 75 145 7.6E-16 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 SUPERFAMILY SSF52540 241 353 7.6E-16 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 Pfam PF08298 PrkA AAA domain 20 380 2.2E-178 T 28-03-2018 IPR013153 PrkA AAA domain AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 PIRSF PIRSF000549 1 644 2.2E-291 T 28-03-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 Gene3D G3DSA:3.40.50.300 64 355 2.4E-13 T 28-03-2018 AM348_RS19195 55ebff05a3e387838d56e1bcf1db4ef2 644 SMART SM00763 19 380 1.4E-215 T 28-03-2018 IPR013153 PrkA AAA domain AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 Pfam PF07690 Major Facilitator Superfamily 22 412 3.1E-51 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 Gene3D G3DSA:1.20.1250.20 262 456 2.3E-24 T 28-03-2018 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 5.6E-9 T 28-03-2018 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 5.6E-9 T 28-03-2018 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 5.6E-9 T 28-03-2018 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 5.6E-9 T 28-03-2018 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 5.6E-9 T 28-03-2018 AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 SUPERFAMILY SSF103473 251 448 1.7E-63 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 SUPERFAMILY SSF103473 8 195 1.7E-63 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS15305 9430849e0ea76246ed69506d820b34a3 457 Gene3D G3DSA:1.20.1250.20 13 202 6.8E-29 T 28-03-2018 AM348_RS22850 f5d03c57465d51d54b002bf58057052c 152 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 149 5.5E-24 T 28-03-2018 IPR002810 NfeD-like, C-terminal domain AM348_RS22850 f5d03c57465d51d54b002bf58057052c 152 Gene3D G3DSA:2.40.50.140 81 152 7.7E-13 T 28-03-2018 AM348_RS22850 f5d03c57465d51d54b002bf58057052c 152 SUPERFAMILY SSF141322 95 150 3.92E-6 T 28-03-2018 AM348_RS22105 2ee1c8550755a4301fa4076b1789cca0 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 1.7E-37 T 28-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AM348_RS22105 2ee1c8550755a4301fa4076b1789cca0 105 SUPERFAMILY SSF81301 4 105 7.52E-37 T 28-03-2018 AM348_RS22105 2ee1c8550755a4301fa4076b1789cca0 105 Gene3D G3DSA:3.30.460.10 1 105 5.3E-34 T 28-03-2018 AM348_RS22105 2ee1c8550755a4301fa4076b1789cca0 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.504 T 28-03-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS AM348_RS22105 2ee1c8550755a4301fa4076b1789cca0 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.3E-27 T 28-03-2018 AM348_RS15555 985b80c2edfb8c1a83bfe9b6b186775e 203 Hamap MF_01381 Endo-type membrane-bound lytic murein transglycosylase A [emtA]. 1 203 63.785 T 28-03-2018 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A GO:0008932|GO:0009279|GO:0016837|GO:0016998 AM348_RS15555 985b80c2edfb8c1a83bfe9b6b186775e 203 SUPERFAMILY SSF53955 37 198 2.76E-26 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS15555 985b80c2edfb8c1a83bfe9b6b186775e 203 Pfam PF01464 Transglycosylase SLT domain 43 168 2.3E-28 T 28-03-2018 IPR008258 Transglycosylase SLT domain 1 AM348_RS15555 985b80c2edfb8c1a83bfe9b6b186775e 203 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 60 88 - T 28-03-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 AM348_RS15555 985b80c2edfb8c1a83bfe9b6b186775e 203 Gene3D G3DSA:1.10.530.10 21 203 5.5E-28 T 28-03-2018 AM348_RS01565 7b5a78481ff652ec6dcc0ee9dd59b530 149 SUPERFAMILY SSF54534 5 143 1.14E-36 T 28-03-2018 AM348_RS01565 7b5a78481ff652ec6dcc0ee9dd59b530 149 Gene3D G3DSA:3.10.50.40 2 149 1.4E-21 T 28-03-2018 AM348_RS01565 7b5a78481ff652ec6dcc0ee9dd59b530 149 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 141 1.0E-14 T 28-03-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain AM348_RS13390 7c4746601264bac705036f7e071119c6 93 ProDom PD064930 YEHE MEMBRANE OUTER STY2382 PRECURSOR ECS2918 SIGNAL 1 83 6.0E-23 T 28-03-2018 IPR020386 Uncharacterised protein family YehE AM348_RS13390 7c4746601264bac705036f7e071119c6 93 Pfam PF10836 Protein of unknown function (DUF2574) 1 93 7.6E-43 T 28-03-2018 IPR020386 Uncharacterised protein family YehE AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 Gene3D G3DSA:2.40.50.40 135 200 4.0E-7 T 28-03-2018 AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 SMART SM00850 143 238 2.3E-27 T 28-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 SUPERFAMILY SSF52172 1 123 5.41E-32 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 SMART SM00448 2 112 4.6E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 Gene3D G3DSA:3.40.50.2300 1 134 1.8E-30 T 28-03-2018 AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 Pfam PF04397 LytTr DNA-binding domain 144 237 2.4E-24 T 28-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 Gene3D G3DSA:2.20.25.10 203 238 7.1E-10 T 28-03-2018 AM348_RS13365 0e266d0a3361f726e729e6688de9f71a 239 Pfam PF00072 Response regulator receiver domain 4 112 5.4E-26 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10715 ab71974d83bc4561c3c4bcbc8fcb3a12 325 Gene3D G3DSA:3.60.130.10 15 325 2.8E-63 T 28-03-2018 AM348_RS10715 ab71974d83bc4561c3c4bcbc8fcb3a12 325 SUPERFAMILY SSF51197 17 321 1.47E-91 T 28-03-2018 AM348_RS10715 ab71974d83bc4561c3c4bcbc8fcb3a12 325 ProDom PD135861 METAL-BINDING IRON CSID GAB CYTOPLASMIC 3D-STRUCTURE HOMOLOG DIRECT SEQUENCING 16 314 5.0E-147 T 28-03-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 AM348_RS10715 ab71974d83bc4561c3c4bcbc8fcb3a12 325 Pfam PF08943 CsiD 21 314 4.2E-148 T 28-03-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 AM348_RS10715 ab71974d83bc4561c3c4bcbc8fcb3a12 325 Hamap MF_01083 Protein CsiD [csiD]. 1 325 74.481 T 28-03-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 AM348_RS09715 7982310ecf9f4f9c7235437219acabc7 397 SUPERFAMILY SSF103473 16 396 1.96E-23 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS09715 7982310ecf9f4f9c7235437219acabc7 397 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 1 397 38.983 T 28-03-2018 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 AM348_RS09715 7982310ecf9f4f9c7235437219acabc7 397 Gene3D G3DSA:1.20.1250.20 2 194 4.5E-14 T 28-03-2018 AM348_RS09715 7982310ecf9f4f9c7235437219acabc7 397 Pfam PF07690 Major Facilitator Superfamily 20 352 8.8E-16 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS09715 7982310ecf9f4f9c7235437219acabc7 397 Gene3D G3DSA:1.20.1250.20 202 397 4.0E-5 T 28-03-2018 AM348_RS14395 4b07af642cabb82344372ccc822505c5 125 Pfam PF04347 Flagellar biosynthesis protein, FliO 38 120 8.3E-22 T 28-03-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AM348_RS14395 4b07af642cabb82344372ccc822505c5 125 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 26 94 5.5E-24 T 28-03-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 AM348_RS20010 c6cb09d7a2fcd1ce88c14b45d413960f 191 Pfam PF04264 YceI-like domain 25 186 2.0E-43 T 28-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM348_RS20010 c6cb09d7a2fcd1ce88c14b45d413960f 191 SMART SM00867 24 188 2.0E-74 T 28-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM348_RS20010 c6cb09d7a2fcd1ce88c14b45d413960f 191 SUPERFAMILY SSF101874 22 190 8.37E-58 T 28-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM348_RS20010 c6cb09d7a2fcd1ce88c14b45d413960f 191 Gene3D G3DSA:2.40.128.110 17 187 4.8E-52 T 28-03-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like AM348_RS20010 c6cb09d7a2fcd1ce88c14b45d413960f 191 Hamap MF_00780 Protein YceI [yceI]. 1 191 47.393 T 28-03-2018 IPR023480 Uncharacterised protein family UPF0312/YceI AM348_RS18215 0ff13ba1e4be1fde4aee22bbd968ff55 298 Pfam PF00248 Aldo/keto reductase family 18 291 1.2E-59 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS18215 0ff13ba1e4be1fde4aee22bbd968ff55 298 Gene3D G3DSA:3.20.20.100 1 298 2.0E-62 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS18215 0ff13ba1e4be1fde4aee22bbd968ff55 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 6.1E-7 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS18215 0ff13ba1e4be1fde4aee22bbd968ff55 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 6.1E-7 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS18215 0ff13ba1e4be1fde4aee22bbd968ff55 298 SUPERFAMILY SSF51430 4 295 2.75E-72 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS22540 e57c97d27cfc66097df187e82d512ce7 391 SUPERFAMILY SSF46565 251 290 1.83E-5 T 28-03-2018 IPR001623 DnaJ domain AM348_RS22540 e57c97d27cfc66097df187e82d512ce7 391 Gene3D G3DSA:1.10.287.110 242 291 4.1E-4 T 28-03-2018 IPR001623 DnaJ domain AM348_RS22540 e57c97d27cfc66097df187e82d512ce7 391 Gene3D G3DSA:1.20.5.190 317 388 0.0098 T 28-03-2018 AM348_RS11095 7b95565c528af6de71f5bf44a102d893 408 Pfam PF17152 Periplasmic sensor domain 44 144 5.1E-30 T 28-03-2018 IPR033417 Periplasmic sensor domain CHASE8 AM348_RS11095 7b95565c528af6de71f5bf44a102d893 408 SUPERFAMILY SSF55073 253 405 6.36E-36 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS11095 7b95565c528af6de71f5bf44a102d893 408 Pfam PF00990 Diguanylate cyclase, GGDEF domain 248 401 7.9E-42 T 28-03-2018 IPR000160 GGDEF domain AM348_RS11095 7b95565c528af6de71f5bf44a102d893 408 Gene3D G3DSA:3.30.70.270 237 406 3.9E-45 T 28-03-2018 AM348_RS11095 7b95565c528af6de71f5bf44a102d893 408 SMART SM00267 237 408 6.4E-53 T 28-03-2018 IPR000160 GGDEF domain AM348_RS11095 7b95565c528af6de71f5bf44a102d893 408 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 405 8.1E-33 T 28-03-2018 IPR000160 GGDEF domain AM348_RS21130 51f27432887f509d0a9e78fefc71ca95 306 SUPERFAMILY SSF141523 177 233 4.32E-26 T 28-03-2018 AM348_RS21130 51f27432887f509d0a9e78fefc71ca95 306 SUPERFAMILY SSF141523 99 149 4.32E-26 T 28-03-2018 AM348_RS21130 51f27432887f509d0a9e78fefc71ca95 306 Pfam PF03734 L,D-transpeptidase catalytic domain 101 231 8.8E-17 T 28-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM348_RS21130 51f27432887f509d0a9e78fefc71ca95 306 Gene3D G3DSA:2.40.440.10 94 233 8.6E-28 T 28-03-2018 AM348_RS14020 96535afb1adaf1b22b5f959eef33ee6a 210 Pfam PF06130 Phosphate propanoyltransferase 23 101 2.7E-25 T 28-03-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 AM348_RS14020 96535afb1adaf1b22b5f959eef33ee6a 210 Pfam PF06130 Phosphate propanoyltransferase 131 196 1.2E-18 T 28-03-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 AM348_RS14020 96535afb1adaf1b22b5f959eef33ee6a 210 PIRSF PIRSF010130 1 210 7.6E-87 T 28-03-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 AM348_RS14020 96535afb1adaf1b22b5f959eef33ee6a 210 Gene3D G3DSA:2.40.40.20 70 187 0.04 T 28-03-2018 AM348_RS22065 c65e22734c666ad4f246f34f0ff8a2f7 311 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 300 5.4E-92 T 28-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM348_RS22065 c65e22734c666ad4f246f34f0ff8a2f7 311 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 8 18 - T 28-03-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 AM348_RS22065 c65e22734c666ad4f246f34f0ff8a2f7 311 Hamap MF_01431 Pyrimidine-specific ribonucleoside hydrolase RihA [rihA]. 1 311 80.251 T 28-03-2018 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA GO:0005737|GO:0006206|GO:0008152|GO:0015949|GO:0016787|GO:0016798|GO:0045437 AM348_RS22065 c65e22734c666ad4f246f34f0ff8a2f7 311 Gene3D G3DSA:3.90.245.10 2 311 3.3E-116 T 28-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM348_RS22065 c65e22734c666ad4f246f34f0ff8a2f7 311 SUPERFAMILY SSF53590 4 309 1.28E-107 T 28-03-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain AM348_RS04340 d37b4d40cf745acd2f49f33dfb7e3777 255 SUPERFAMILY SSF51351 1 248 2.75E-91 T 28-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS04340 d37b4d40cf745acd2f49f33dfb7e3777 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 28-03-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS04340 d37b4d40cf745acd2f49f33dfb7e3777 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 1.8E-105 T 28-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS04340 d37b4d40cf745acd2f49f33dfb7e3777 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 40.688 T 28-03-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS04340 d37b4d40cf745acd2f49f33dfb7e3777 255 Pfam PF00121 Triosephosphate isomerase 5 246 1.5E-93 T 28-03-2018 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS04340 d37b4d40cf745acd2f49f33dfb7e3777 255 Gene3D G3DSA:3.20.20.70 1 255 2.0E-100 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS05505 1628bec73ab4c2ec629657f9192404b3 29 TIGRFAM TIGR04459 TisB_tox: type I toxin-antitoxin system toxin TisB 1 29 6.1E-17 T 28-03-2018 IPR025211 Toxin TisB, type I toxin-antitoxin system GO:0005253|GO:0005887|GO:0009432|GO:0022611 AM348_RS05505 1628bec73ab4c2ec629657f9192404b3 29 Pfam PF13939 Toxin TisB, type I toxin-antitoxin system 1 28 3.7E-15 T 28-03-2018 IPR025211 Toxin TisB, type I toxin-antitoxin system GO:0005253|GO:0005887|GO:0009432|GO:0022611 AM348_RS23595 f0438b672634a1830e9113874b97a409 255 Gene3D G3DSA:3.40.50.300 1 219 2.4E-60 T 28-03-2018 AM348_RS23595 f0438b672634a1830e9113874b97a409 255 Pfam PF00005 ABC transporter 17 156 1.2E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS23595 f0438b672634a1830e9113874b97a409 255 SUPERFAMILY SSF52540 1 212 4.28E-67 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23595 f0438b672634a1830e9113874b97a409 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS23595 f0438b672634a1830e9113874b97a409 255 SMART SM00382 26 205 1.0E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS16300 1a8234b4e59e69b11f70d957d38f0f2f 234 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 13 232 7.4E-70 T 28-03-2018 IPR006487 Bacteriophage lambda, GpL, minor tail AM348_RS16300 1a8234b4e59e69b11f70d957d38f0f2f 234 Pfam PF05100 Phage minor tail protein L 31 232 2.3E-72 T 28-03-2018 IPR006487 Bacteriophage lambda, GpL, minor tail AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 5.4E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 5.4E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 5.4E-11 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 PIRSF PIRSF001365 3 303 6.6E-78 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 Pfam PF00701 Dihydrodipicolinate synthetase family 9 293 8.1E-61 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 SMART SM01130 7 295 6.3E-89 T 28-03-2018 IPR002220 DapA-like GO:0008152|GO:0016829 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 SUPERFAMILY SSF51569 5 293 1.78E-82 T 28-03-2018 AM348_RS02155 c81f9e6bc31cba96946a21e1311f7bdd 306 Gene3D G3DSA:3.20.20.70 1 302 4.0E-80 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS14770 2dc35643d3f6152374fbe6f2f7110a37 106 Pfam PF05135 Phage gp6-like head-tail connector protein 4 102 2.1E-19 T 28-03-2018 IPR021146 Phage gp6-like head-tail connector protein AM348_RS14770 2dc35643d3f6152374fbe6f2f7110a37 106 Gene3D G3DSA:1.10.3230.10 3 90 4.4E-4 T 28-03-2018 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 Pfam PF01145 SPFH domain / Band 7 family 22 203 7.2E-34 T 28-03-2018 IPR001107 Band 7 domain AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 PRINTS PR00721 Stomatin signature 152 170 1.5E-27 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 PRINTS PR00721 Stomatin signature 171 192 1.5E-27 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 PRINTS PR00721 Stomatin signature 73 94 1.5E-27 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 PRINTS PR00721 Stomatin signature 108 125 1.5E-27 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 PRINTS PR00721 Stomatin signature 128 151 1.5E-27 T 28-03-2018 IPR001972 Stomatin family GO:0016020 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 28-03-2018 IPR018080 Band 7/stomatin-like, conserved site AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 SUPERFAMILY SSF117892 49 183 7.19E-42 T 28-03-2018 IPR001107 Band 7 domain AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 Pfam PF16200 C-terminal region of band_7 237 297 5.1E-7 T 28-03-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 AM348_RS22845 d5b78142d35bd7045590531f33c25381 305 SMART SM00244 18 176 5.8E-61 T 28-03-2018 IPR001107 Band 7 domain AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 Pfam PF01259 SAICAR synthetase 7 230 3.0E-59 T 28-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 Gene3D G3DSA:3.30.200.20 1 93 2.7E-24 T 28-03-2018 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 235 9.1E-85 T 28-03-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 28-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 Gene3D G3DSA:3.30.470.20 94 220 4.8E-46 T 28-03-2018 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 SUPERFAMILY SSF56104 3 232 1.8E-75 T 28-03-2018 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 28-03-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS11750 f56354fa18040ea6ac3e36626ce403ef 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.727 T 28-03-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 Gene3D G3DSA:2.40.40.10 58 169 2.6E-15 T 28-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 Pfam PF05036 Sporulation related domain 295 366 4.3E-15 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 81 180 4.5E-29 T 28-03-2018 IPR012997 Rare lipoprotein A AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 SUPERFAMILY SSF110997 296 365 4.18E-15 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 Gene3D G3DSA:3.30.70.1070 297 368 3.3E-16 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 SUPERFAMILY SSF50685 79 160 2.51E-6 T 28-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 Pfam PF03330 Lytic transglycolase 79 166 1.1E-19 T 28-03-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain AM348_RS22125 07fbe387d6ce86de5f99f2ffff00c7e9 369 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 11 169 20.574 T 28-03-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 SUPERFAMILY SSF46689 243 292 5.82E-11 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 Gene3D G3DSA:1.10.10.60 25 245 5.7E-14 T 28-03-2018 AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 SUPERFAMILY SSF46689 191 241 3.17E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 Gene3D G3DSA:1.10.10.60 246 298 1.5E-12 T 28-03-2018 AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 178 1.3E-38 T 28-03-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 SMART SM00342 207 290 2.1E-28 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS08915 9d83d964715289465a90bd8384ff7c1e 299 Pfam PF12833 Helix-turn-helix domain 213 288 3.2E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS02660 25366da4a9f9302d06950e9b53c9f661 577 Pfam PF17243 POTRA domain TamA domain 1 26 100 4.1E-20 T 28-03-2018 IPR035243 TamA, POTRA domain 1 AM348_RS02660 25366da4a9f9302d06950e9b53c9f661 577 Pfam PF01103 Surface antigen 281 574 1.3E-29 T 28-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM348_RS02660 25366da4a9f9302d06950e9b53c9f661 577 Gene3D G3DSA:3.10.20.310 103 188 2.3E-9 T 28-03-2018 AM348_RS02660 25366da4a9f9302d06950e9b53c9f661 577 Gene3D G3DSA:2.40.160.50 220 576 4.7E-59 T 28-03-2018 AM348_RS02660 25366da4a9f9302d06950e9b53c9f661 577 Gene3D G3DSA:3.10.20.310 25 102 0.51 T 28-03-2018 AM348_RS02660 25366da4a9f9302d06950e9b53c9f661 577 Pfam PF07244 Surface antigen variable number repeat 189 246 1.6E-7 T 28-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM348_RS04300 070fe21d67bbaf275cfbd11e4b62bc82 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 4.1E-62 T 28-03-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 AM348_RS04300 070fe21d67bbaf275cfbd11e4b62bc82 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 4.5E-90 T 28-03-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 AM348_RS04300 070fe21d67bbaf275cfbd11e4b62bc82 161 Pfam PF03737 Aldolase/RraA 5 152 3.0E-35 T 28-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AM348_RS04300 070fe21d67bbaf275cfbd11e4b62bc82 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 47.073 T 28-03-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 AM348_RS04300 070fe21d67bbaf275cfbd11e4b62bc82 161 Gene3D G3DSA:3.50.30.40 1 159 1.5E-35 T 28-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AM348_RS04300 070fe21d67bbaf275cfbd11e4b62bc82 161 SUPERFAMILY SSF89562 2 158 1.57E-43 T 28-03-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein AM348_RS01890 ef5fbbd84cf4ecef203b7fc744b2788d 152 Pfam PF04073 Aminoacyl-tRNA editing domain 25 139 6.6E-27 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS01890 ef5fbbd84cf4ecef203b7fc744b2788d 152 SUPERFAMILY SSF55826 4 152 1.96E-40 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS01890 ef5fbbd84cf4ecef203b7fc744b2788d 152 Gene3D G3DSA:3.90.960.10 2 152 2.3E-38 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS00105 9f3db3def7f254470bdc25b2ca918d4f 483 Gene3D G3DSA:1.10.4100.10 1 331 2.0E-103 T 28-03-2018 AM348_RS00105 9f3db3def7f254470bdc25b2ca918d4f 483 Pfam PF03972 MmgE/PrpD family 18 463 4.1E-159 T 28-03-2018 IPR005656 MmgE/PrpD GO:0016829 AM348_RS00105 9f3db3def7f254470bdc25b2ca918d4f 483 SUPERFAMILY SSF103378 13 482 9.02E-161 T 28-03-2018 IPR005656 MmgE/PrpD GO:0016829 AM348_RS00105 9f3db3def7f254470bdc25b2ca918d4f 483 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 13 483 2.9E-276 T 28-03-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 AM348_RS00105 9f3db3def7f254470bdc25b2ca918d4f 483 Gene3D G3DSA:1.10.4100.10 387 483 3.4E-13 T 28-03-2018 AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 95 150 9.5E-15 T 28-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 SMART SM00529 56 154 9.9E-40 T 28-03-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 Gene3D G3DSA:1.10.10.10 25 102 2.0E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 SUPERFAMILY SSF46785 35 93 5.54E-12 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 SUPERFAMILY SSF47979 95 150 1.88E-14 T 28-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 Gene3D G3DSA:1.10.60.10 103 149 1.2E-20 T 28-03-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 AM348_RS21140 88cb0b99a316b64b7ed7957db3e57091 157 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 38 92 3.5E-9 T 28-03-2018 IPR022687 DTXR-type HTH domain GO:0003677 AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 Gene3D G3DSA:2.60.120.10 87 245 1.1E-15 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 Pfam PF12833 Helix-turn-helix domain 214 292 3.8E-17 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 Pfam PF10114 Sensory domain found in PocR 11 161 1.8E-30 T 28-03-2018 IPR018771 PocR domain AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 SUPERFAMILY SSF46689 192 242 8.51E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 SMART SM00342 208 291 1.7E-22 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 SUPERFAMILY SSF46689 245 292 3.09E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS21655 ed12acd86007c7e1267dd2137151dd31 297 Gene3D G3DSA:1.10.10.60 246 297 2.3E-10 T 28-03-2018 AM348_RS16495 dfc96d2f93537116eebd9289be108f25 102 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 22.859 T 28-03-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 AM348_RS16495 dfc96d2f93537116eebd9289be108f25 102 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 85 5.0E-21 T 28-03-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 AM348_RS22090 dee3878558ba3db5b1bbc49c40e1e2fc 213 Gene3D G3DSA:3.40.50.620 2 213 8.4E-57 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22090 dee3878558ba3db5b1bbc49c40e1e2fc 213 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 3 213 29.792 T 28-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AM348_RS22090 dee3878558ba3db5b1bbc49c40e1e2fc 213 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 7 212 6.6E-60 T 28-03-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 AM348_RS22090 dee3878558ba3db5b1bbc49c40e1e2fc 213 SUPERFAMILY SSF52374 3 213 1.72E-57 T 28-03-2018 AM348_RS22090 dee3878558ba3db5b1bbc49c40e1e2fc 213 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 68 1.0E-12 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS22090 dee3878558ba3db5b1bbc49c40e1e2fc 213 Pfam PF01467 Cytidylyltransferase-like 7 187 4.2E-37 T 28-03-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 AM348_RS06075 558c981f880bc9bc730a3bbd450074e2 463 Gene3D G3DSA:3.40.640.10 102 347 7.7E-31 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS06075 558c981f880bc9bc730a3bbd450074e2 463 Pfam PF12390 Selenocysteine synthase N terminal 9 48 1.4E-9 T 28-03-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM348_RS06075 558c981f880bc9bc730a3bbd450074e2 463 SUPERFAMILY SSF53383 75 461 7.36E-47 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS06075 558c981f880bc9bc730a3bbd450074e2 463 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 460 3.4E-189 T 28-03-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM348_RS06075 558c981f880bc9bc730a3bbd450074e2 463 Pfam PF03841 L-seryl-tRNA selenium transferase 83 451 6.1E-177 T 28-03-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM348_RS06075 558c981f880bc9bc730a3bbd450074e2 463 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 463 254.642 T 28-03-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 AM348_RS01935 e073d861f7160548a707250acd28da20 481 SUPERFAMILY SSF48179 273 479 5.1E-49 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS01935 e073d861f7160548a707250acd28da20 481 SUPERFAMILY SSF51735 2 256 6.3E-69 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS01935 e073d861f7160548a707250acd28da20 481 Gene3D G3DSA:1.10.1040.10 272 480 1.4E-59 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS01935 e073d861f7160548a707250acd28da20 481 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 204 454 1.9E-69 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS01935 e073d861f7160548a707250acd28da20 481 Gene3D G3DSA:3.40.50.720 1 268 4.6E-63 T 28-03-2018 AM348_RS01935 e073d861f7160548a707250acd28da20 481 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 1.6E-31 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS04840 91af669749df41c8ac6025bf12bc5fbd 299 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 2.1E-89 T 28-03-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 AM348_RS04840 91af669749df41c8ac6025bf12bc5fbd 299 Pfam PF00892 EamA-like transporter family 2 128 4.8E-8 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS04840 91af669749df41c8ac6025bf12bc5fbd 299 Pfam PF00892 EamA-like transporter family 139 274 1.8E-10 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS04840 91af669749df41c8ac6025bf12bc5fbd 299 SUPERFAMILY SSF103481 198 276 4.97E-8 T 28-03-2018 AM348_RS04840 91af669749df41c8ac6025bf12bc5fbd 299 SUPERFAMILY SSF103481 35 130 1.7E-6 T 28-03-2018 AM348_RS08900 1631d765fcfeef1c4af91d6c145e3ecb 484 PIRSF PIRSF002457 1 484 1.2E-152 T 28-03-2018 IPR030676 Citrate carrier CitT-related AM348_RS08900 1631d765fcfeef1c4af91d6c145e3ecb 484 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 30 478 7.2E-117 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS08900 1631d765fcfeef1c4af91d6c145e3ecb 484 Pfam PF00939 Sodium:sulfate symporter transmembrane region 10 483 3.1E-134 T 28-03-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 77 90 - T 28-03-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 8 167 1.4E-41 T 28-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 188 337 1.7E-19 T 28-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 Gene3D G3DSA:3.30.2340.10 167 302 1.6E-28 T 28-03-2018 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 4 341 1.7E-96 T 28-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 5 342 28.587 T 28-03-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS10125 411ffd70efa2e29433b5a481b6d4883b 349 SUPERFAMILY SSF55120 5 339 3.31E-102 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 28-03-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 Gene3D G3DSA:3.40.50.720 189 310 1.1E-24 T 28-03-2018 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 SUPERFAMILY SSF51735 160 334 3.4E-46 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 SMART SM00829 12 367 0.0015 T 28-03-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 Pfam PF00107 Zinc-binding dehydrogenase 197 330 2.0E-23 T 28-03-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 SUPERFAMILY SSF50129 318 369 3.25E-12 T 28-03-2018 IPR011032 GroES-like AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 Gene3D G3DSA:3.90.180.10 1 188 2.3E-60 T 28-03-2018 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 SUPERFAMILY SSF50129 1 186 1.17E-72 T 28-03-2018 IPR011032 GroES-like AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 3.6E-223 T 28-03-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 AM348_RS16985 21f7ce507d0485a265267d466ccba79f 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 151 8.9E-26 T 28-03-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 Gene3D G3DSA:3.40.630.10 1 408 2.0E-48 T 28-03-2018 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 Pfam PF07687 Peptidase dimerisation domain 206 303 1.8E-11 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 407 2.7E-158 T 28-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 SUPERFAMILY SSF53187 322 405 2.38E-84 T 28-03-2018 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 SUPERFAMILY SSF53187 1 209 2.38E-84 T 28-03-2018 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 SUPERFAMILY SSF55031 208 320 8.37E-43 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 Hamap MF_00550 Peptidase T [pepT]. 1 404 56.399 T 28-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 Pfam PF01546 Peptidase family M20/M25/M40 139 402 6.7E-16 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 PIRSF PIRSF037215 1 408 7.5E-184 T 28-03-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 AM348_RS19415 f290ce400179e852cd0d3d46c84aac41 408 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 28-03-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 AM348_RS12365 70d628fbd804ce30a830e1b94657f984 183 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 42.728 T 28-03-2018 IPR022990 Uncharacterised protein family UPF0115 AM348_RS12365 70d628fbd804ce30a830e1b94657f984 183 SMART SM00463 95 173 5.8E-23 T 28-03-2018 IPR002625 Smr domain AM348_RS12365 70d628fbd804ce30a830e1b94657f984 183 Pfam PF01713 Smr domain 98 172 2.6E-18 T 28-03-2018 IPR002625 Smr domain AM348_RS12365 70d628fbd804ce30a830e1b94657f984 183 SUPERFAMILY SSF160443 96 170 5.36E-10 T 28-03-2018 IPR002625 Smr domain AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 SUPERFAMILY SSF54534 49 127 1.57E-18 T 28-03-2018 AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.908 T 28-03-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0065007|GO:0070063 AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 Pfam PF14760 Rnk N-terminus 4 42 2.3E-11 T 28-03-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 PIRSF PIRSF006092 30 128 5.9E-23 T 28-03-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 Gene3D G3DSA:1.10.286.20 3 43 2.3E-12 T 28-03-2018 AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 126 8.0E-21 T 28-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM348_RS22240 726e3b18ba2c028c3bec792cbad43d12 136 Gene3D G3DSA:3.10.50.30 45 136 1.0E-23 T 28-03-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 AM348_RS22895 a51ba9e6c15185d9d2b66373d6edb25e 330 SUPERFAMILY SSF81345 10 325 1.1E-86 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS22895 a51ba9e6c15185d9d2b66373d6edb25e 330 Pfam PF01032 FecCD transport family 18 325 1.6E-93 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS22895 a51ba9e6c15185d9d2b66373d6edb25e 330 Gene3D G3DSA:1.10.3470.10 3 330 2.4E-69 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS20705 4f7e1a1c82cb8d9132c9101f8a91581b 254 Pfam PF02698 DUF218 domain 81 214 1.5E-27 T 28-03-2018 IPR003848 Domain of unknown function DUF218 AM348_RS20705 4f7e1a1c82cb8d9132c9101f8a91581b 254 Gene3D G3DSA:3.40.50.620 71 213 4.0E-28 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 SUPERFAMILY SSF53613 1 302 4.21E-74 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 Pfam PF00294 pfkB family carbohydrate kinase 4 294 6.2E-55 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 PRINTS PR00990 Ribokinase signature 21 40 9.4E-5 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 PRINTS PR00990 Ribokinase signature 173 188 9.4E-5 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 PRINTS PR00990 Ribokinase signature 212 223 9.4E-5 T 28-03-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 Gene3D G3DSA:3.40.1190.20 1 308 4.3E-66 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 241 254 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS15685 5aca28f9812cdc9839ba1fe615230168 315 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 26 50 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS19930 35132fd6a4c572f6a08c0fca0510caa6 138 PIRSF PIRSF002889 1 137 5.9E-42 T 28-03-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AM348_RS19930 35132fd6a4c572f6a08c0fca0510caa6 138 Pfam PF00460 Flagella basal body rod protein 9 39 4.0E-12 T 28-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM348_RS19930 35132fd6a4c572f6a08c0fca0510caa6 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 28-03-2018 IPR019776 Flagellar basal body rod protein, conserved site AM348_RS19930 35132fd6a4c572f6a08c0fca0510caa6 138 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 2.8E-46 T 28-03-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 AM348_RS08860 6434d3b60e2505a917897bf333dc72bb 227 Pfam PF11153 Protein of unknown function (DUF2931) 7 224 1.7E-48 T 28-03-2018 IPR021326 Protein of unknown function DUF2931 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 346 1.2E-16 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 3.3E-146 T 28-03-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 SUPERFAMILY SSF111369 195 270 8.76E-8 T 28-03-2018 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 Gene3D G3DSA:2.40.50.100 60 138 4.1E-13 T 28-03-2018 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 289 5.9E-13 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 Gene3D G3DSA:2.40.50.100 209 384 2.3E-6 T 28-03-2018 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 SUPERFAMILY SSF111369 56 112 5.1E-6 T 28-03-2018 AM348_RS10570 bc9a12151cd437d2d500b01d71cf4872 390 Gene3D G3DSA:1.10.287.470 139 186 1.0E-6 T 28-03-2018 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 ProSitePatterns PS00897 LacY family proton/sugar symporters signature 2. 280 294 - T 28-03-2018 IPR018457 LacY/RafB permease family, conserved site GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 SUPERFAMILY SSF103473 6 404 2.44E-49 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 68 97 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 214 242 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 315 334 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 103 125 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 145 163 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 260 281 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 284 310 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 PRINTS PR00174 LacY proton/sugar symporter family signature 346 366 4.5E-110 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 Pfam PF01306 LacY proton/sugar symporter 2 412 1.6E-214 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 6 401 2.4E-211 T 28-03-2018 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 Gene3D G3DSA:1.20.1250.20 206 417 4.3E-19 T 28-03-2018 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 ProSitePatterns PS00896 LacY family proton/sugar symporters signature 1. 64 78 - T 28-03-2018 IPR018457 LacY/RafB permease family, conserved site GO:0006810|GO:0016020 AM348_RS00095 e0b8ab538e374542a47c04441195aade 417 Gene3D G3DSA:1.20.1250.20 1 201 1.5E-26 T 28-03-2018 AM348_RS08295 3b5ae9c456d6a70f61ab98ba20e6d207 381 Gene3D G3DSA:3.90.1510.10 42 271 1.8E-97 T 28-03-2018 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 AM348_RS08295 3b5ae9c456d6a70f61ab98ba20e6d207 381 SUPERFAMILY SSF110738 1 375 5.36E-142 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS08295 3b5ae9c456d6a70f61ab98ba20e6d207 381 Pfam PF02595 Glycerate kinase family 3 373 1.7E-149 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS08295 3b5ae9c456d6a70f61ab98ba20e6d207 381 Gene3D G3DSA:3.20.20.70 272 365 0.23 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS08295 3b5ae9c456d6a70f61ab98ba20e6d207 381 PIRSF PIRSF006078 1 377 1.1E-141 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS08295 3b5ae9c456d6a70f61ab98ba20e6d207 381 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.0E-170 T 28-03-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 AM348_RS01355 17c4915e2411e574fb85cc4329b2494f 255 Pfam PF09335 SNARE associated Golgi protein 36 159 2.4E-19 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS21855 0cf5ad0bde3ced5200a2986f0737ab2a 188 PIRSF PIRSF001296 1 188 6.1E-72 T 28-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM348_RS21855 0cf5ad0bde3ced5200a2986f0737ab2a 188 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 3 187 2.9E-87 T 28-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM348_RS21855 0cf5ad0bde3ced5200a2986f0737ab2a 188 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 188 32.099 T 28-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM348_RS21855 0cf5ad0bde3ced5200a2986f0737ab2a 188 Pfam PF02669 K+-transporting ATPase, c chain 5 187 1.3E-65 T 28-03-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 AM348_RS02325 f6b2d2744e0220c1cec5ffa4411df389 83 SMART SM00530 12 67 2.6E-9 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS02325 f6b2d2744e0220c1cec5ffa4411df389 83 Gene3D G3DSA:1.10.260.40 1 83 1.7E-14 T 28-03-2018 AM348_RS02325 f6b2d2744e0220c1cec5ffa4411df389 83 SUPERFAMILY SSF47413 6 73 4.61E-19 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS02325 f6b2d2744e0220c1cec5ffa4411df389 83 Pfam PF01381 Helix-turn-helix 13 65 1.3E-11 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS03890 6096eec6175096509d53203cf0a45ce3 230 PIRSF PIRSF006993 1 230 1.1E-112 T 28-03-2018 IPR016500 Uncharacterised conserved protein UCP006993 AM348_RS03890 6096eec6175096509d53203cf0a45ce3 230 Pfam PF07356 Protein of unknown function (DUF1481) 42 226 6.9E-72 T 28-03-2018 IPR010858 Protein of unknown function DUF1481 AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 SUPERFAMILY SSF52540 23 264 3.63E-74 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 SMART SM00382 49 242 1.6E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 Gene3D G3DSA:3.40.50.300 8 331 1.7E-79 T 28-03-2018 AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 311 1.3E-18 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 Pfam PF00005 ABC transporter 41 192 3.0E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS15995 c0ced79d4de97ce388f4cbcf14968edf 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 242 329 1.4E-28 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS02610 413bc03af19a59dd6ffd1bf1dab79920 318 Gene3D G3DSA:3.40.50.2300 141 301 3.4E-31 T 28-03-2018 AM348_RS02610 413bc03af19a59dd6ffd1bf1dab79920 318 SUPERFAMILY SSF53822 23 310 3.53E-71 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS02610 413bc03af19a59dd6ffd1bf1dab79920 318 Pfam PF13407 Periplasmic binding protein domain 26 274 3.4E-44 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS02610 413bc03af19a59dd6ffd1bf1dab79920 318 Gene3D G3DSA:3.40.50.2300 22 140 1.2E-22 T 28-03-2018 AM348_RS12565 f2b807f1b15c271d9f7ee3b97949cd83 199 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 172 2.0E-44 T 28-03-2018 AM348_RS12565 f2b807f1b15c271d9f7ee3b97949cd83 199 Gene3D G3DSA:1.10.3210.10 1 199 6.6E-54 T 28-03-2018 AM348_RS12565 f2b807f1b15c271d9f7ee3b97949cd83 199 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 44.109 T 28-03-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 AM348_RS12565 f2b807f1b15c271d9f7ee3b97949cd83 199 Pfam PF13023 HD domain 11 167 5.0E-17 T 28-03-2018 IPR006674 HD domain AM348_RS12565 f2b807f1b15c271d9f7ee3b97949cd83 199 SMART SM00471 26 151 1.1E-6 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS12565 f2b807f1b15c271d9f7ee3b97949cd83 199 SUPERFAMILY SSF109604 2 193 5.71E-45 T 28-03-2018 AM348_RS18955 c2b2af447e0fdb447da57e26fba2553e 115 PIRSF PIRSF000699 10 115 2.2E-39 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS18955 c2b2af447e0fdb447da57e26fba2553e 115 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 19 112 5.9E-32 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS18955 c2b2af447e0fdb447da57e26fba2553e 115 Gene3D G3DSA:1.20.58.80 15 113 1.4E-34 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS18955 c2b2af447e0fdb447da57e26fba2553e 115 SUPERFAMILY SSF46973 15 113 6.67E-34 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS20145 da32a6b381f8f62e1c4427aaa37fc2b4 427 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 65 414 7.0E-106 T 28-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM348_RS20145 da32a6b381f8f62e1c4427aaa37fc2b4 427 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 12 34 4.7E-5 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS20145 da32a6b381f8f62e1c4427aaa37fc2b4 427 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 6 426 1.2E-182 T 28-03-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 AM348_RS20145 da32a6b381f8f62e1c4427aaa37fc2b4 427 Pfam PF04261 Dyp-type peroxidase family 65 414 4.4E-118 T 28-03-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 AM348_RS20145 da32a6b381f8f62e1c4427aaa37fc2b4 427 SUPERFAMILY SSF54909 58 420 4.11E-98 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS02285 dde3fcd611b2868ea7f23feb300ec447 338 Gene3D G3DSA:3.30.360.10 135 338 4.1E-29 T 28-03-2018 AM348_RS02285 dde3fcd611b2868ea7f23feb300ec447 338 SUPERFAMILY SSF55347 127 274 9.32E-16 T 28-03-2018 AM348_RS02285 dde3fcd611b2868ea7f23feb300ec447 338 Gene3D G3DSA:3.40.50.720 1 134 2.2E-36 T 28-03-2018 AM348_RS02285 dde3fcd611b2868ea7f23feb300ec447 338 SUPERFAMILY SSF51735 3 151 7.18E-43 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS02285 dde3fcd611b2868ea7f23feb300ec447 338 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 122 1.3E-27 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS22690 502005141abbc4a693534ef505c7adb6 197 SMART SM00421 131 188 0.0014 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22690 502005141abbc4a693534ef505c7adb6 197 Gene3D G3DSA:1.10.10.10 51 195 8.8E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22690 502005141abbc4a693534ef505c7adb6 197 Pfam PF00196 Bacterial regulatory proteins, luxR family 135 187 9.2E-7 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS22690 502005141abbc4a693534ef505c7adb6 197 SUPERFAMILY SSF46894 126 190 1.5E-9 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS14765 bd37ab372ffb8c54f40a0c99c82e6178 405 Pfam PF05065 Phage capsid family 124 401 4.4E-71 T 28-03-2018 IPR024455 Phage capsid AM348_RS14765 bd37ab372ffb8c54f40a0c99c82e6178 405 SUPERFAMILY SSF56563 118 404 7.72E-60 T 28-03-2018 AM348_RS14765 bd37ab372ffb8c54f40a0c99c82e6178 405 Gene3D G3DSA:3.30.2400.10 145 290 1.6E-23 T 28-03-2018 AM348_RS14765 bd37ab372ffb8c54f40a0c99c82e6178 405 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 3 401 6.3E-99 T 28-03-2018 IPR024455 Phage capsid AM348_RS14095 83ba23f872c891ff089c7eade8075ac2 378 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 16 366 30.893 T 28-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 AM348_RS14095 83ba23f872c891ff089c7eade8075ac2 378 PIRSF PIRSF026782 12 373 2.0E-131 T 28-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 AM348_RS14095 83ba23f872c891ff089c7eade8075ac2 378 Pfam PF01888 CbiD 16 272 1.4E-93 T 28-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 AM348_RS14095 83ba23f872c891ff089c7eade8075ac2 378 Gene3D G3DSA:3.30.2110.10 18 187 8.1E-57 T 28-03-2018 AM348_RS14095 83ba23f872c891ff089c7eade8075ac2 378 SUPERFAMILY SSF111342 7 290 2.09E-87 T 28-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 AM348_RS14095 83ba23f872c891ff089c7eade8075ac2 378 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 23 366 5.4E-84 T 28-03-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 AM348_RS05030 6b506b0751bde4476b557f6ae6eee65a 348 Gene3D G3DSA:3.30.1890.10 42 202 3.2E-55 T 28-03-2018 AM348_RS05030 6b506b0751bde4476b557f6ae6eee65a 348 Gene3D G3DSA:1.10.287.210 203 294 2.1E-21 T 28-03-2018 AM348_RS05030 6b506b0751bde4476b557f6ae6eee65a 348 SUPERFAMILY SSF160355 54 318 5.1E-84 T 28-03-2018 AM348_RS05030 6b506b0751bde4476b557f6ae6eee65a 348 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 8 347 56.829 T 28-03-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 AM348_RS05030 6b506b0751bde4476b557f6ae6eee65a 348 Pfam PF02706 Chain length determinant protein 15 120 3.6E-14 T 28-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 Gene3D G3DSA:1.20.5.570 463 490 7.8E-19 T 28-03-2018 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 14 434 8.0E-173 T 28-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 SUPERFAMILY SSF50475 6 325 1.73E-128 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 SUPERFAMILY SSF143968 326 489 1.7E-66 T 28-03-2018 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 9 458 6.0E-190 T 28-03-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 Gene3D G3DSA:3.40.1670.10 326 462 3.2E-52 T 28-03-2018 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 ProDom PD024571 NODULATION TRANSFERASE NODZ GLYCOSYLTRANSFERASE PLASMID Z 2.4.1.- PROBABLE FUCOSYLTRANSFERASE PROTEIN 399 487 0.003 T 28-03-2018 AM348_RS04770 41daa042c79d178781797f82eeb02993 497 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 4 490 73.842 T 28-03-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 AM348_RS19740 12e7b6c0f520a26be8fd61b9a900a7da 390 Gene3D G3DSA:1.20.1250.20 195 377 2.1E-15 T 28-03-2018 AM348_RS19740 12e7b6c0f520a26be8fd61b9a900a7da 390 SUPERFAMILY SSF103473 15 382 3.4E-33 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS19740 12e7b6c0f520a26be8fd61b9a900a7da 390 Pfam PF07690 Major Facilitator Superfamily 16 235 3.9E-9 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19740 12e7b6c0f520a26be8fd61b9a900a7da 390 Gene3D G3DSA:1.20.1250.20 6 193 5.9E-11 T 28-03-2018 AM348_RS19875 54f7547ad73a011b958696cca3626cbf 399 SUPERFAMILY SSF103473 5 388 4.32E-47 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS19875 54f7547ad73a011b958696cca3626cbf 399 Gene3D G3DSA:1.20.1250.20 1 192 1.7E-16 T 28-03-2018 AM348_RS19875 54f7547ad73a011b958696cca3626cbf 399 Pfam PF07690 Major Facilitator Superfamily 16 318 3.0E-25 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19875 54f7547ad73a011b958696cca3626cbf 399 Gene3D G3DSA:1.20.1250.20 196 392 8.5E-18 T 28-03-2018 AM348_RS13220 05e1feb202531e1220e092639c2a8cde 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 8.1E-48 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS13220 05e1feb202531e1220e092639c2a8cde 336 Gene3D G3DSA:1.10.3470.10 34 331 2.4E-30 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS19315 e6d5cc50e23378cfcc223e7d25e47a38 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 262 5.6E-18 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19315 e6d5cc50e23378cfcc223e7d25e47a38 270 Gene3D G3DSA:1.10.3720.10 8 268 1.5E-30 T 28-03-2018 AM348_RS19315 e6d5cc50e23378cfcc223e7d25e47a38 270 SUPERFAMILY SSF161098 65 256 4.45E-22 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS23370 5681dabf1dc9c32801ea81e2ed99891e 375 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 1.4E-93 T 28-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM348_RS23370 5681dabf1dc9c32801ea81e2ed99891e 375 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 8.9E-181 T 28-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM348_RS23370 5681dabf1dc9c32801ea81e2ed99891e 375 Gene3D G3DSA:3.20.20.105 1 368 5.9E-160 T 28-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM348_RS23370 5681dabf1dc9c32801ea81e2ed99891e 375 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 3.2E-191 T 28-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM348_RS23370 5681dabf1dc9c32801ea81e2ed99891e 375 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.736 T 28-03-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM348_RS23370 5681dabf1dc9c32801ea81e2ed99891e 375 SUPERFAMILY SSF51713 1 364 1.44E-163 T 28-03-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 AM348_RS17340 feaa6a0cf3b3034ca5f26ff4abb3b299 461 Gene3D G3DSA:1.20.1250.20 242 461 5.6E-21 T 28-03-2018 AM348_RS17340 feaa6a0cf3b3034ca5f26ff4abb3b299 461 Pfam PF07690 Major Facilitator Superfamily 43 419 9.7E-10 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17340 feaa6a0cf3b3034ca5f26ff4abb3b299 461 TIGRFAM TIGR00886 2A0108: nitrite transporter 34 415 5.3E-103 T 28-03-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 AM348_RS17340 feaa6a0cf3b3034ca5f26ff4abb3b299 461 Gene3D G3DSA:1.20.1250.20 19 232 1.7E-15 T 28-03-2018 AM348_RS17340 feaa6a0cf3b3034ca5f26ff4abb3b299 461 SUPERFAMILY SSF103473 18 458 3.27E-37 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00165 628ff7cfa26a6be5ba3d51552e7a9934 209 Pfam PF01810 LysE type translocator 15 194 7.1E-17 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS15925 0486f81a434871de9acd29955c5587f5 337 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 54.565 T 28-03-2018 IPR028616 Regulator of RpoS AM348_RS15925 0486f81a434871de9acd29955c5587f5 337 Gene3D G3DSA:3.40.50.2300 6 296 5.2E-34 T 28-03-2018 AM348_RS15925 0486f81a434871de9acd29955c5587f5 337 Pfam PF00072 Response regulator receiver domain 10 119 1.0E-28 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS15925 0486f81a434871de9acd29955c5587f5 337 SUPERFAMILY SSF52172 8 125 2.56E-32 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS15925 0486f81a434871de9acd29955c5587f5 337 SMART SM00448 8 120 1.2E-30 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS02685 3bd99640f40994eac868778b525cbdef 185 Gene3D G3DSA:3.40.30.10 25 184 8.8E-6 T 28-03-2018 AM348_RS02685 3bd99640f40994eac868778b525cbdef 185 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 183 1.6E-91 T 28-03-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ AM348_RS02685 3bd99640f40994eac868778b525cbdef 185 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 1.1E-76 T 28-03-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ AM348_RS11145 be4049462b4585bc1932c9773995a438 243 SUPERFAMILY SSF64438 4 242 2.38E-91 T 28-03-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic AM348_RS11145 be4049462b4585bc1932c9773995a438 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 242 9.2E-81 T 28-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase AM348_RS11145 be4049462b4585bc1932c9773995a438 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 6.4E-82 T 28-03-2018 IPR003730 Multi-copper polyphenol oxidoreductase AM348_RS11145 be4049462b4585bc1932c9773995a438 243 Gene3D G3DSA:3.60.140.10 1 243 7.0E-97 T 28-03-2018 AM348_RS10335 478167bc6a1098a4c02c5803fb51443e 373 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 371 1.5E-177 T 28-03-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 AM348_RS10335 478167bc6a1098a4c02c5803fb51443e 373 Pfam PF01924 Hydrogenase formation hypA family 19 367 9.5E-153 T 28-03-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 AM348_RS10335 478167bc6a1098a4c02c5803fb51443e 373 PIRSF PIRSF005622 1 372 9.1E-160 T 28-03-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 AM348_RS07540 76bfdfb279a195733e8c4ce15e80eb12 85 Pfam PF07369 Protein of unknown function (DUF1488) 5 84 6.0E-28 T 28-03-2018 IPR009962 Protein of unknown function DUF1488 AM348_RS07540 76bfdfb279a195733e8c4ce15e80eb12 85 SUPERFAMILY SSF160272 1 84 7.32E-32 T 28-03-2018 IPR009962 Protein of unknown function DUF1488 AM348_RS07540 76bfdfb279a195733e8c4ce15e80eb12 85 Gene3D G3DSA:3.30.160.140 5 83 8.2E-32 T 28-03-2018 IPR009962 Protein of unknown function DUF1488 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 Gene3D G3DSA:3.40.50.2300 3 149 4.6E-44 T 28-03-2018 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 41 57 6.3E-29 T 28-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 97 110 6.3E-29 T 28-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 75 90 6.3E-29 T 28-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 6.3E-29 T 28-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 6.3E-29 T 28-03-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 139 1.6E-43 T 28-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 SMART SM00226 3 141 2.1E-63 T 28-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily AM348_RS13690 f66a7ebae469cf69ac7ab2a8c02f4a38 149 SUPERFAMILY SSF52788 1 142 3.79E-44 T 28-03-2018 IPR023485 Phosphotyrosine protein phosphatase I superfamily AM348_RS21275 97f6c879e820ab9bb30b70eebb3b59bd 368 Gene3D G3DSA:3.40.1710.10 38 188 1.6E-24 T 28-03-2018 AM348_RS21275 97f6c879e820ab9bb30b70eebb3b59bd 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 1.1E-5 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS21275 97f6c879e820ab9bb30b70eebb3b59bd 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 1.1E-5 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS21275 97f6c879e820ab9bb30b70eebb3b59bd 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 1.1E-5 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS21275 97f6c879e820ab9bb30b70eebb3b59bd 368 Pfam PF12698 ABC-2 family transporter protein 25 359 8.9E-48 T 28-03-2018 AM348_RS03830 95f31162a3badef4ce045c7e45a3cb4b 145 Gene3D G3DSA:3.40.630.30 1 144 1.3E-28 T 28-03-2018 AM348_RS03830 95f31162a3badef4ce045c7e45a3cb4b 145 SUPERFAMILY SSF55729 1 138 4.29E-27 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS03830 95f31162a3badef4ce045c7e45a3cb4b 145 Pfam PF13673 Acetyltransferase (GNAT) domain 38 132 7.2E-17 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS08520 72bc116a134e46ff5641d7d38ea4bfbc 257 Gene3D G3DSA:3.40.50.80 134 257 6.2E-23 T 28-03-2018 AM348_RS08520 72bc116a134e46ff5641d7d38ea4bfbc 257 Gene3D G3DSA:2.40.30.10 11 133 1.7E-28 T 28-03-2018 AM348_RS08520 72bc116a134e46ff5641d7d38ea4bfbc 257 Pfam PF04954 Siderophore-interacting protein 143 255 2.0E-20 T 28-03-2018 IPR007037 Siderophore-interacting protein AM348_RS08520 72bc116a134e46ff5641d7d38ea4bfbc 257 SUPERFAMILY SSF63380 6 138 1.48E-14 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS08520 72bc116a134e46ff5641d7d38ea4bfbc 257 Pfam PF08021 Siderophore-interacting FAD-binding domain 23 133 1.2E-31 T 28-03-2018 IPR013113 FAD-binding 9, siderophore-interacting AM348_RS03365 e709d87d6eb7318d8c56fed601139112 334 Gene3D G3DSA:3.40.1190.20 6 334 1.1E-50 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS03365 e709d87d6eb7318d8c56fed601139112 334 Pfam PF00294 pfkB family carbohydrate kinase 30 321 5.6E-35 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS03365 e709d87d6eb7318d8c56fed601139112 334 SUPERFAMILY SSF53613 2 311 6.24E-52 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 Gene3D G3DSA:1.10.287.470 110 169 3.1E-10 T 28-03-2018 AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 Gene3D G3DSA:2.40.50.100 42 106 5.1E-16 T 28-03-2018 AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 Hamap MF_01304 UPF0194 membrane protein YbhG [ybhG]. 1 327 50.007 T 28-03-2018 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 SUPERFAMILY SSF111369 41 98 2.09E-8 T 28-03-2018 AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 SUPERFAMILY SSF111369 177 291 3.66E-13 T 28-03-2018 AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 Gene3D G3DSA:1.20.1600.10 175 328 4.6E-17 T 28-03-2018 AM348_RS21260 0cbcf7977c9a537dc2d01f886797dadd 331 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 318 1.7E-16 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS16355 7df05d13a9edeeb1fd613b54049f5021 98 Pfam PF03795 YCII-related domain 2 94 7.2E-28 T 28-03-2018 IPR005545 YCII-related AM348_RS16355 7df05d13a9edeeb1fd613b54049f5021 98 Gene3D G3DSA:3.30.70.1060 1 98 2.9E-28 T 28-03-2018 AM348_RS16355 7df05d13a9edeeb1fd613b54049f5021 98 SUPERFAMILY SSF54909 2 98 4.29E-31 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 SUPERFAMILY SSF54913 1 112 8.9E-42 T 28-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 PIRSF PIRSF039144 1 112 3.4E-52 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 PRINTS PR00340 P-II protein signature 83 103 1.6E-40 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 PRINTS PR00340 P-II protein signature 2 17 1.6E-40 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 PRINTS PR00340 P-II protein signature 23 41 1.6E-40 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 PRINTS PR00340 P-II protein signature 52 75 1.6E-40 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 7.1E-41 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 Gene3D G3DSA:3.30.70.120 1 108 3.9E-45 T 28-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 SMART SM00938 4 105 6.9E-60 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 28-03-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AM348_RS23125 f49b509356427ef805eeaddb7816443c 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 28-03-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AM348_RS14585 a97cc48a1f59f1b90f5965ddcf4489e8 134 Pfam PF04448 Protein of unknown function (DUF551) 65 129 3.9E-14 T 28-03-2018 IPR007539 Domain of unknown function DUF551 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 339 421 2.9E-26 T 28-03-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 SUPERFAMILY SSF142984 248 330 1.44E-20 T 28-03-2018 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 Pfam PF10531 SLBB domain 253 295 1.5E-6 T 28-03-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 54 226 1.4E-49 T 28-03-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 349 360 - T 28-03-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 SUPERFAMILY SSF140490 334 429 1.24E-31 T 28-03-2018 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 SMART SM00928 336 381 2.0E-21 T 28-03-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 SUPERFAMILY SSF142019 16 246 1.31E-85 T 28-03-2018 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 13 423 1.9E-203 T 28-03-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12600 0370cfd0bb9c43ace0aca52d0f68d59d 445 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 174 189 - T 28-03-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS07655 0432042be7897f132c11bced7525e553 258 Gene3D G3DSA:3.10.200.10 22 248 1.0E-69 T 28-03-2018 IPR001148 Alpha carbonic anhydrase AM348_RS07655 0432042be7897f132c11bced7525e553 258 SMART SM01057 25 250 9.3E-86 T 28-03-2018 IPR001148 Alpha carbonic anhydrase AM348_RS07655 0432042be7897f132c11bced7525e553 258 SUPERFAMILY SSF51069 24 246 2.36E-73 T 28-03-2018 IPR001148 Alpha carbonic anhydrase AM348_RS07655 0432042be7897f132c11bced7525e553 258 Pfam PF00194 Eukaryotic-type carbonic anhydrase 25 248 5.1E-49 T 28-03-2018 IPR001148 Alpha carbonic anhydrase AM348_RS09720 b0e8720e0007be29626d553ba8a54ae9 346 Gene3D G3DSA:3.20.20.100 1 346 2.7E-93 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS09720 b0e8720e0007be29626d553ba8a54ae9 346 PRINTS PR00069 Aldo-keto reductase signature 164 181 4.2E-8 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS09720 b0e8720e0007be29626d553ba8a54ae9 346 PRINTS PR00069 Aldo-keto reductase signature 116 134 4.2E-8 T 28-03-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 AM348_RS09720 b0e8720e0007be29626d553ba8a54ae9 346 Pfam PF00248 Aldo/keto reductase family 16 337 5.5E-71 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS09720 b0e8720e0007be29626d553ba8a54ae9 346 SUPERFAMILY SSF51430 1 344 3.14E-105 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS10200 718d6d72176ea9353551955b05ddb24d 447 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 19 421 5.8E-89 T 28-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 AM348_RS10200 718d6d72176ea9353551955b05ddb24d 447 Pfam PF02321 Outer membrane efflux protein 234 404 1.2E-25 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS10200 718d6d72176ea9353551955b05ddb24d 447 Pfam PF02321 Outer membrane efflux protein 22 209 1.1E-23 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS10200 718d6d72176ea9353551955b05ddb24d 447 Gene3D G3DSA:1.20.1600.10 14 428 4.6E-68 T 28-03-2018 AM348_RS10200 718d6d72176ea9353551955b05ddb24d 447 SUPERFAMILY SSF56954 2 420 9.16E-79 T 28-03-2018 AM348_RS11990 39152ef065199ed61c4c5939052bcf9d 288 Gene3D G3DSA:3.40.1190.20 18 276 5.4E-47 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS11990 39152ef065199ed61c4c5939052bcf9d 288 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 21 279 4.3E-52 T 28-03-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS11990 39152ef065199ed61c4c5939052bcf9d 288 Pfam PF08543 Phosphomethylpyrimidine kinase 72 267 7.7E-25 T 28-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS11990 39152ef065199ed61c4c5939052bcf9d 288 SUPERFAMILY SSF53613 23 279 1.09E-59 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS14825 97375bf733d3fa02f3c3dd9f06c1ca8d 194 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 6 155 1.5E-4 T 28-03-2018 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 144 3.5E-30 T 28-03-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 Pfam PF02050 Flagellar FliJ protein 19 141 7.8E-34 T 28-03-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 27 43 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 63 84 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 86 107 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 108 126 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 4 26 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 126 146 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PRINTS PR01004 Flagellar FliJ protein signature 44 61 2.0E-80 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS14420 2a37153a4f99dcb5b99e115ba18db14e 147 PIRSF PIRSF019404 1 147 8.8E-52 T 28-03-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 SUPERFAMILY SSF50692 641 803 7.01E-44 T 28-03-2018 IPR009010 Aspartate decarboxylase-like domain AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 28-03-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 4.5E-16 T 28-03-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 Gene3D G3DSA:3.40.50.740 268 449 6.4E-29 T 28-03-2018 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 Gene3D G3DSA:2.40.40.20 628 803 2.3E-41 T 28-03-2018 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 Gene3D G3DSA:3.40.228.10 1 267 1.2E-69 T 28-03-2018 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 SUPERFAMILY SSF53706 1 638 2.62E-234 T 28-03-2018 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 28-03-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 AM348_RS17380 fc79b62a156117119c9dac3d3d2a7b97 803 Pfam PF00384 Molybdopterin oxidoreductase 2 377 1.7E-22 T 28-03-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 28-03-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 12 282 4.2E-116 T 28-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 SMART SM00861 319 484 1.4E-67 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Pfam PF02779 Transketolase, pyrimidine binding domain 320 480 1.9E-40 T 28-03-2018 IPR005475 Transketolase-like, pyrimidine-binding domain AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 11 620 0.0 T 28-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.395 T 28-03-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Gene3D G3DSA:3.40.50.970 3 296 5.2E-74 T 28-03-2018 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 SUPERFAMILY SSF52922 492 619 5.23E-32 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Gene3D G3DSA:3.40.50.970 297 487 5.8E-63 T 28-03-2018 AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Pfam PF02780 Transketolase, C-terminal domain 495 611 1.7E-26 T 28-03-2018 IPR033248 Transketolase, C-terminal domain AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 SUPERFAMILY SSF52518 10 199 1.65E-74 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 SUPERFAMILY SSF52518 243 381 1.65E-74 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 SUPERFAMILY SSF52518 317 504 9.61E-58 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS23295 1256d5cff2c2ba78a7789b136e452afd 620 Gene3D G3DSA:3.40.50.920 495 620 1.1E-33 T 28-03-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 AM348_RS15290 a8ab9ed33d016f3e3621c5d06a6c0da4 228 Pfam PF04352 ProQ/FINO family 8 115 7.1E-43 T 28-03-2018 IPR016103 ProQ/FinO domain AM348_RS15290 a8ab9ed33d016f3e3621c5d06a6c0da4 228 SMART SM00945 5 119 4.0E-60 T 28-03-2018 IPR016103 ProQ/FinO domain AM348_RS15290 a8ab9ed33d016f3e3621c5d06a6c0da4 228 SUPERFAMILY SSF48657 5 119 6.93E-40 T 28-03-2018 IPR016103 ProQ/FinO domain AM348_RS15290 a8ab9ed33d016f3e3621c5d06a6c0da4 228 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 227 30.518 T 28-03-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 AM348_RS15290 a8ab9ed33d016f3e3621c5d06a6c0da4 228 Pfam PF17516 ProQ C-terminal domain 178 228 4.2E-24 T 28-03-2018 IPR035236 RNA chaperone ProQ, C-terminal AM348_RS15290 a8ab9ed33d016f3e3621c5d06a6c0da4 228 Gene3D G3DSA:1.10.1710.10 1 121 9.8E-41 T 28-03-2018 IPR016103 ProQ/FinO domain AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 202 3.5E-72 T 28-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 7.0E-103 T 28-03-2018 IPR010016 KipI family AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 SUPERFAMILY SSF50891 88 214 7.21E-48 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 Gene3D G3DSA:2.40.100.10 86 216 6.6E-52 T 28-03-2018 IPR029000 Cyclophilin-like domain AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 Gene3D G3DSA:3.30.1360.40 1 82 1.9E-10 T 28-03-2018 IPR024946 Arginine repressor C-terminal-like domain Reactome: R-HSA-4615885 AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 SMART SM00796 4 202 1.5E-98 T 28-03-2018 IPR003833 Carboxyltransferase domain, subdomain C and D AM348_RS21805 34fda4beabb7f158b0c1ce97931830ac 218 SUPERFAMILY SSF160467 5 92 1.83E-10 T 28-03-2018 AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.7E-130 T 28-03-2018 IPR033752 MetA family KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 301 52.51 T 28-03-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 4.0E-144 T 28-03-2018 AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 7.4E-164 T 28-03-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 PIRSF PIRSF000450 1 308 2.8E-145 T 28-03-2018 IPR033752 MetA family KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 Gene3D G3DSA:3.40.50.880 34 301 4.4E-46 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS03825 0602e218fa9803414ec35a6ab89cdc5f 309 SUPERFAMILY SSF52317 17 297 2.14E-98 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS06115 e6c00672e1b2320c5f5c39e9316b919c 651 Gene3D G3DSA:1.50.10.10 55 182 1.6E-10 T 28-03-2018 AM348_RS06115 e6c00672e1b2320c5f5c39e9316b919c 651 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 12 560 8.5E-167 T 28-03-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18 AM348_RS06115 e6c00672e1b2320c5f5c39e9316b919c 651 Gene3D G3DSA:1.50.10.20 183 347 1.5E-32 T 28-03-2018 AM348_RS06115 e6c00672e1b2320c5f5c39e9316b919c 651 SUPERFAMILY SSF48208 15 426 5.05E-40 T 28-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM348_RS02830 76d7bcb6f529810e73e75417de3537bd 95 Pfam PF07338 Protein of unknown function (DUF1471) 39 94 1.2E-19 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS02830 76d7bcb6f529810e73e75417de3537bd 95 Gene3D G3DSA:3.30.1660.10 36 94 5.6E-20 T 28-03-2018 IPR025543 Dodecin-like AM348_RS02830 76d7bcb6f529810e73e75417de3537bd 95 SUPERFAMILY SSF159871 13 94 8.63E-20 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 Pfam PF01039 Carboxyl transferase domain 57 241 6.6E-19 T 28-03-2018 IPR034733 Acetyl-CoA carboxylase KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388|Reactome: R-HSA-196780 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 SUPERFAMILY SSF52096 23 284 5.97E-92 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 249 258 4.7E-39 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 227 238 4.7E-39 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 127 141 4.7E-39 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 161 179 4.7E-39 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 198 215 4.7E-39 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 281 4.9E-152 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 279 39.291 T 28-03-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-6679|MetaCyc: PWY-7388 AM348_RS12440 fb08e123ed330d76eff26105148f92c7 304 Gene3D G3DSA:3.90.226.10 11 288 1.2E-73 T 28-03-2018 AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 SMART SM00849 129 351 1.8E-23 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 Pfam PF14863 Alkyl sulfatase dimerisation 388 526 8.1E-61 T 28-03-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 Gene3D G3DSA:3.60.15.10 103 399 1.3E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 SUPERFAMILY SSF55718 536 658 1.6E-36 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 Gene3D G3DSA:3.30.1050.10 528 658 5.6E-31 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 Pfam PF00753 Metallo-beta-lactamase superfamily 126 351 4.0E-37 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 SUPERFAMILY SSF56281 29 528 1.05E-152 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS17300 9ca35bc1e8f435d191fbb1f2484df8ae 658 Pfam PF14864 Alkyl sulfatase C-terminal 534 658 4.5E-39 T 28-03-2018 IPR029229 Alkyl sulfatase, C-terminal AM348_RS16040 2be798a5ed27c43dcf3807b51b3b7f5d 65 Pfam PF07358 Protein of unknown function (DUF1482) 4 59 6.3E-22 T 28-03-2018 IPR009954 Protein of unknown function DUF1482 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 SUPERFAMILY SSF56801 3 619 4.32E-157 T 28-03-2018 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 TIGRFAM TIGR02316 propion_prpE: propionate--CoA ligase 1 628 0.0 T 28-03-2018 IPR012694 Propionate--CoA ligase GO:0019629|GO:0050218 KEGG: 00640+6.2.1.17|MetaCyc: PWY-3941|MetaCyc: PWY-5104|MetaCyc: PWY-5747 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Gene3D G3DSA:2.30.38.10 399 493 9.0E-11 T 28-03-2018 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Gene3D G3DSA:3.40.50.980 49 239 7.5E-41 T 28-03-2018 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Gene3D G3DSA:3.30.300.30 494 607 2.1E-22 T 28-03-2018 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Gene3D G3DSA:3.40.50.980 240 398 3.5E-34 T 28-03-2018 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 ProSitePatterns PS00455 Putative AMP-binding domain signature. 237 248 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Pfam PF13193 AMP-binding enzyme C-terminal domain 509 592 2.0E-21 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 57 7.0E-24 T 28-03-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 AM348_RS00100 4e20ea52c0cf697ab3a1399c41ef7780 628 Pfam PF00501 AMP-binding enzyme 59 500 1.0E-81 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS11465 c0678393b1d49c8ee95da6d45ade257e 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 4.4E-41 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS11465 c0678393b1d49c8ee95da6d45ade257e 329 Gene3D G3DSA:1.10.3470.10 34 318 1.7E-27 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 Pfam PF13187 4Fe-4S dicluster domain 36 81 7.8E-7 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 Pfam PF12838 4Fe-4S dicluster domain 107 154 1.8E-7 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 SUPERFAMILY SSF54862 32 156 1.59E-16 T 28-03-2018 AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 Gene3D G3DSA:3.30.70.20 94 163 5.0E-11 T 28-03-2018 AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 6 155 1.7E-64 T 28-03-2018 IPR004496 Ferredoxin-type protein NapF GO:0005506|GO:0009055|GO:0055114 AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 Gene3D G3DSA:3.30.70.20 45 83 6.2E-9 T 28-03-2018 AM348_RS12885 e7cec550eef9edeacb2e97aa04f451be 163 Gene3D G3DSA:1.10.1060.10 6 44 0.0085 T 28-03-2018 AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 SUPERFAMILY SSF52540 259 474 1.89E-40 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 Pfam PF00005 ABC transporter 24 163 1.0E-17 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 Pfam PF00005 ABC transporter 276 429 7.7E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 SMART SM00382 285 479 4.3E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 SMART SM00382 28 214 4.3E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 Gene3D G3DSA:3.40.50.300 2 236 8.8E-33 T 28-03-2018 AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 Gene3D G3DSA:3.40.50.300 243 486 5.9E-43 T 28-03-2018 AM348_RS21455 c5e5e863eb05161b150878dc35dbb95f 490 SUPERFAMILY SSF52540 4 225 1.0E-35 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05005 cdee685bac5bb121aec4317ae1e459e1 225 Gene3D G3DSA:3.40.630.30 88 225 7.7E-14 T 28-03-2018 AM348_RS05005 cdee685bac5bb121aec4317ae1e459e1 225 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 44 225 43.111 T 28-03-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315 AM348_RS05005 cdee685bac5bb121aec4317ae1e459e1 225 SUPERFAMILY SSF55729 42 220 7.44E-18 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS05005 cdee685bac5bb121aec4317ae1e459e1 225 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 225 9.8E-91 T 28-03-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Gene3D G3DSA:1.10.8.10 201 243 3.6E-18 T 28-03-2018 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 SMART SM01086 335 434 9.8E-22 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Gene3D G3DSA:1.10.8.60 335 431 3.3E-29 T 28-03-2018 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 SMART SM00382 49 332 2.5E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 SUPERFAMILY SSF52540 3 441 1.24E-94 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.733 T 28-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Gene3D G3DSA:3.40.50.300 46 123 3.7E-5 T 28-03-2018 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 2.1E-5 T 28-03-2018 IPR019489 Clp ATPase, C-terminal AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Gene3D G3DSA:1.10.8.10 124 200 1.6E-29 T 28-03-2018 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 107 5.8E-7 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 188 329 5.3E-43 T 28-03-2018 IPR003959 ATPase, AAA-type, core GO:0005524 AM348_RS04290 7c95da8b8a09903b9862d955fa7f07d6 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 8.3E-236 T 28-03-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 AM348_RS06625 4777beb250685aadd95cf7dc03a22210 563 SUPERFAMILY SSF53448 8 236 9.85E-32 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS06625 4777beb250685aadd95cf7dc03a22210 563 Gene3D G3DSA:3.90.550.10 8 257 1.1E-25 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS06625 4777beb250685aadd95cf7dc03a22210 563 Pfam PF00535 Glycosyl transferase family 2 8 131 2.7E-18 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS15395 6f4b44d9a9aba6f89b871f7f6d9b0544 533 Pfam PF00563 EAL domain 274 501 2.9E-60 T 28-03-2018 IPR001633 EAL domain AM348_RS15395 6f4b44d9a9aba6f89b871f7f6d9b0544 533 Gene3D G3DSA:3.20.20.450 261 516 4.1E-75 T 28-03-2018 IPR001633 EAL domain AM348_RS15395 6f4b44d9a9aba6f89b871f7f6d9b0544 533 Pfam PF12792 CSS motif domain associated with EAL 43 234 1.3E-36 T 28-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM348_RS15395 6f4b44d9a9aba6f89b871f7f6d9b0544 533 SUPERFAMILY SSF141868 273 515 4.32E-73 T 28-03-2018 IPR001633 EAL domain AM348_RS15395 6f4b44d9a9aba6f89b871f7f6d9b0544 533 SMART SM00052 265 506 7.3E-107 T 28-03-2018 IPR001633 EAL domain AM348_RS22300 485d22713ccb2014458f5f64c6a2b015 386 Gene3D G3DSA:3.40.640.10 56 271 1.5E-52 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS22300 485d22713ccb2014458f5f64c6a2b015 386 Pfam PF00155 Aminotransferase class I and II 33 383 2.0E-60 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS22300 485d22713ccb2014458f5f64c6a2b015 386 SUPERFAMILY SSF53383 10 384 7.05E-99 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS22300 485d22713ccb2014458f5f64c6a2b015 386 Gene3D G3DSA:3.90.1150.10 272 386 4.2E-27 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS22300 485d22713ccb2014458f5f64c6a2b015 386 Gene3D G3DSA:3.90.1150.10 3 55 0.097 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 SUPERFAMILY SSF81296 397 510 1.68E-33 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 Gene3D G3DSA:2.70.98.10 23 392 3.8E-169 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 23 507 2.0E-200 T 28-03-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 SUPERFAMILY SSF74650 23 394 5.65E-166 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 6 509 63.373 T 28-03-2018 IPR023704 Glucan biosynthesis protein G AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 PIRSF PIRSF006281 1 511 6.7E-241 T 28-03-2018 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D AM348_RS20050 2140638f7687de0f444612feb1daa0ed 511 Gene3D G3DSA:2.60.40.10 398 511 1.3E-43 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS03310 62f020dda928682742291633482aa6f8 252 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 3 248 2.7E-122 T 28-03-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03310 62f020dda928682742291633482aa6f8 252 Pfam PF12706 Beta-lactamase superfamily domain 73 223 3.3E-14 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS03310 62f020dda928682742291633482aa6f8 252 Gene3D G3DSA:3.60.15.10 1 252 9.0E-46 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS03310 62f020dda928682742291633482aa6f8 252 SUPERFAMILY SSF56281 5 251 2.67E-31 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS18210 207b219943bdb202611205684caaa28a 174 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 162 173 - T 28-03-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM348_RS18210 207b219943bdb202611205684caaa28a 174 SUPERFAMILY SSF49329 24 174 2.49E-45 T 28-03-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM348_RS18210 207b219943bdb202611205684caaa28a 174 Gene3D G3DSA:2.60.40.200 20 174 3.6E-35 T 28-03-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM348_RS18210 207b219943bdb202611205684caaa28a 174 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 35 173 2.6E-30 T 28-03-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 SUPERFAMILY SSF54211 221 392 3.79E-62 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 SUPERFAMILY SSF56719 730 795 1.33E-86 T 28-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 SUPERFAMILY SSF56719 394 560 1.33E-86 T 28-03-2018 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 SMART SM00387 31 175 1.8E-29 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Gene3D G3DSA:3.40.50.670 402 801 1.7E-108 T 28-03-2018 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 793 4.0E-30 T 28-03-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 SUPERFAMILY SSF55874 4 220 5.24E-76 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Gene3D G3DSA:3.30.230.10 221 392 2.4E-66 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Pfam PF01751 Toprim domain 419 531 4.1E-18 T 28-03-2018 IPR006171 TOPRIM domain AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 SMART SM00433 35 797 1.2E-279 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 28-03-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 171 3.4E-21 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.7E-80 T 28-03-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 28-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 114.096 T 28-03-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Gene3D G3DSA:3.30.565.10 17 220 7.2E-75 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 Pfam PF00204 DNA gyrase B 221 390 1.6E-59 T 28-03-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS05405 0fbeaaa657c6dc405fc2219576160421 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 6.7E-71 T 28-03-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 AM348_RS15420 75eaefdd7bd5f2521aefe935dfbe456c 114 Gene3D G3DSA:3.30.1330.40 2 114 1.0E-21 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS15420 75eaefdd7bd5f2521aefe935dfbe456c 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 28-03-2018 IPR019897 RidA, conserved site AM348_RS15420 75eaefdd7bd5f2521aefe935dfbe456c 114 Pfam PF01042 Endoribonuclease L-PSP 4 114 2.4E-28 T 28-03-2018 IPR006175 YjgF/YER057c/UK114 family AM348_RS15420 75eaefdd7bd5f2521aefe935dfbe456c 114 SUPERFAMILY SSF55298 5 114 4.56E-27 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS21210 be9c5e8269fa744bbfc7d92641cd65b9 88 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 9 67 1.0E-18 T 28-03-2018 IPR012783 Zinc finger, C4 DksA/TraR-type AM348_RS21210 be9c5e8269fa744bbfc7d92641cd65b9 88 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 39 63 - T 28-03-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site AM348_RS21210 be9c5e8269fa744bbfc7d92641cd65b9 88 SUPERFAMILY SSF57716 39 71 7.27E-8 T 28-03-2018 AM348_RS21210 be9c5e8269fa744bbfc7d92641cd65b9 88 PRINTS PR00618 DksA/TraR zinc finger signature 39 50 3.2E-6 T 28-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM348_RS21210 be9c5e8269fa744bbfc7d92641cd65b9 88 PRINTS PR00618 DksA/TraR zinc finger signature 51 63 3.2E-6 T 28-03-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria AM348_RS21210 be9c5e8269fa744bbfc7d92641cd65b9 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 35 67 1.4E-13 T 28-03-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 AM348_RS12070 cd2ca11c04d081f0b936749311171df6 418 SUPERFAMILY SSF103473 7 406 4.71E-34 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS12070 cd2ca11c04d081f0b936749311171df6 418 Pfam PF03825 Nucleoside H+ symporter 1 406 9.7E-183 T 28-03-2018 AM348_RS12070 cd2ca11c04d081f0b936749311171df6 418 Gene3D G3DSA:1.20.1250.20 4 194 1.2E-11 T 28-03-2018 AM348_RS12070 cd2ca11c04d081f0b936749311171df6 418 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 415 2.2E-211 T 28-03-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 AM348_RS12070 cd2ca11c04d081f0b936749311171df6 418 Gene3D G3DSA:1.20.1250.20 199 416 2.2E-23 T 28-03-2018 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 Pfam PF03222 Tryptophan/tyrosine permease family 10 402 6.6E-154 T 28-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 45 64 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 90 110 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 18 41 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 9.9E-105 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 25 41 - T 28-03-2018 IPR013061 Tryptophan/tryrosine permease, conserved site AM348_RS08160 cb751fe4b67e97cafe6e41900acce4c7 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 15 395 4.9E-161 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 Pfam PF00361 Proton-conducting membrane transporter 134 430 8.5E-69 T 28-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 499 7.2E-182 T 28-03-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 4.5E-36 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 4.5E-36 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 4.5E-36 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 4.5E-36 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12635 c7b9147b053b220b6c23fc34ebbc6ef8 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 4.5E-36 T 28-03-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 187 5.1E-25 T 28-03-2018 IPR023214 HAD-like domain AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 Gene3D G3DSA:1.10.150.240 30 79 6.0E-16 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 56 187 2.7E-18 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 Gene3D G3DSA:3.40.50.1000 3 29 0.21 T 28-03-2018 IPR023214 HAD-like domain AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 SUPERFAMILY SSF56784 10 208 2.13E-44 T 28-03-2018 IPR023214 HAD-like domain AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 Gene3D G3DSA:3.40.50.1000 80 212 1.1E-26 T 28-03-2018 IPR023214 HAD-like domain AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 1.3E-9 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 101 114 1.3E-9 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 1.3E-9 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS12555 49d7eb45c204f39ff2e39511af1a2274 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 169 1.3E-9 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 3.2E-120 T 28-03-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 2.0E-7 T 28-03-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 Pfam PF00005 ABC transporter 20 166 5.8E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 SUPERFAMILY SSF52540 4 236 1.62E-66 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 Gene3D G3DSA:3.40.50.300 1 236 7.6E-64 T 28-03-2018 AM348_RS07940 e5023e1766d8d3c393617d32fc6f3159 241 SMART SM00382 28 213 6.4E-10 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05500 ffefc24e9e83da42d16468e79acc1857 277 SUPERFAMILY SSF103481 175 276 8.5E-13 T 28-03-2018 AM348_RS05500 ffefc24e9e83da42d16468e79acc1857 277 Pfam PF00892 EamA-like transporter family 140 274 3.7E-13 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS05500 ffefc24e9e83da42d16468e79acc1857 277 SUPERFAMILY SSF103481 40 135 2.22E-12 T 28-03-2018 AM348_RS02615 1755cad9fced9f1663b517d67faac5c8 175 SUPERFAMILY SSF50324 4 175 1.3E-66 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS02615 1755cad9fced9f1663b517d67faac5c8 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 1.3E-54 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS02615 1755cad9fced9f1663b517d67faac5c8 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS02615 1755cad9fced9f1663b517d67faac5c8 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.994 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS02615 1755cad9fced9f1663b517d67faac5c8 175 Gene3D G3DSA:3.90.80.10 3 175 1.6E-53 T 28-03-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 AM348_RS00230 6a5395a683c9d45769e403336b27dc86 254 Gene3D G3DSA:3.40.50.880 4 254 5.3E-41 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS00230 6a5395a683c9d45769e403336b27dc86 254 SUPERFAMILY SSF52317 6 246 1.04E-39 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS00230 6a5395a683c9d45769e403336b27dc86 254 Pfam PF07722 Peptidase C26 8 224 5.6E-67 T 28-03-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 AM348_RS07835 c5889a3980f01cdb2e2be3ebcd83af5f 167 PIRSF PIRSF005276 3 167 1.3E-59 T 28-03-2018 IPR007481 Stringent starvation protein B AM348_RS07835 c5889a3980f01cdb2e2be3ebcd83af5f 167 Pfam PF04386 Stringent starvation protein B 9 167 2.6E-43 T 28-03-2018 IPR007481 Stringent starvation protein B AM348_RS07835 c5889a3980f01cdb2e2be3ebcd83af5f 167 SUPERFAMILY SSF101738 4 112 2.35E-48 T 28-03-2018 IPR007481 Stringent starvation protein B AM348_RS07835 c5889a3980f01cdb2e2be3ebcd83af5f 167 Gene3D G3DSA:2.30.30.220 10 107 1.7E-41 T 28-03-2018 IPR007481 Stringent starvation protein B AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 Gene3D G3DSA:3.90.1150.10 3 169 2.0E-36 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 Gene3D G3DSA:3.40.640.10 175 304 2.6E-43 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 PIRSF PIRSF000521 3 128 2.2E-7 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 PIRSF PIRSF000521 122 420 4.1E-39 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 8 418 2.2E-201 T 28-03-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 SUPERFAMILY SSF53383 23 418 1.33E-126 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 Gene3D G3DSA:3.90.1150.10 305 420 3.8E-29 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 Pfam PF00202 Aminotransferase class-III 24 418 5.5E-126 T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS18475 11286827dd1c527870a9da755cda7be8 420 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 28-03-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 AM348_RS18345 7c5f2f4e91384e3041117e98219de12a 319 PIRSF PIRSF037004 1 318 3.5E-131 T 28-03-2018 IPR017087 Uncharacterised conserved protein UCP037004 AM348_RS18345 7c5f2f4e91384e3041117e98219de12a 319 Pfam PF04463 Protein of unknown function (DUF523) 7 149 1.0E-36 T 28-03-2018 IPR007553 Domain of unknown function DUF523 AM348_RS18345 7c5f2f4e91384e3041117e98219de12a 319 Pfam PF08349 Protein of unknown function (DUF1722) 192 309 7.2E-39 T 28-03-2018 IPR013560 Domain of unknown function DUF1722 AM348_RS02745 87c43c24829e7169756774da69b77d75 307 Pfam PF00892 EamA-like transporter family 16 158 3.1E-17 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS02745 87c43c24829e7169756774da69b77d75 307 Pfam PF00892 EamA-like transporter family 170 303 1.1E-12 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS02745 87c43c24829e7169756774da69b77d75 307 SUPERFAMILY SSF103481 56 161 1.18E-14 T 28-03-2018 AM348_RS02745 87c43c24829e7169756774da69b77d75 307 SUPERFAMILY SSF103481 205 304 8.11E-8 T 28-03-2018 AM348_RS02835 059a29254aea076958cb25292de46134 540 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 398 417 - T 28-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM348_RS02835 059a29254aea076958cb25292de46134 540 SUPERFAMILY SSF47203 283 443 5.96E-43 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS02835 059a29254aea076958cb25292de46134 540 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 439 2.7E-31 T 28-03-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 AM348_RS02835 059a29254aea076958cb25292de46134 540 Gene3D G3DSA:1.20.140.10 276 449 1.1E-36 T 28-03-2018 AM348_RS02835 059a29254aea076958cb25292de46134 540 SUPERFAMILY SSF56645 61 283 1.83E-34 T 28-03-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 AM348_RS02835 059a29254aea076958cb25292de46134 540 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 183 195 - T 28-03-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 AM348_RS02835 059a29254aea076958cb25292de46134 540 Gene3D G3DSA:2.40.110.10 179 275 6.4E-21 T 28-03-2018 AM348_RS02835 059a29254aea076958cb25292de46134 540 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 181 275 6.3E-17 T 28-03-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 AM348_RS20280 956c17aad289c78f1d28067248bdce38 159 Pfam PF00583 Acetyltransferase (GNAT) family 30 138 1.4E-11 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS20280 956c17aad289c78f1d28067248bdce38 159 Gene3D G3DSA:3.40.630.30 1 159 6.2E-19 T 28-03-2018 AM348_RS20280 956c17aad289c78f1d28067248bdce38 159 SUPERFAMILY SSF55729 1 149 1.05E-19 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS07275 2c3a95a9940027bbbeb941eb92d8fe6c 240 Pfam PF13309 HTH domain 171 228 3.3E-19 T 28-03-2018 AM348_RS07275 2c3a95a9940027bbbeb941eb92d8fe6c 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 153 1.0E-68 T 28-03-2018 IPR013559 YheO-like AM348_RS07275 2c3a95a9940027bbbeb941eb92d8fe6c 240 Pfam PF08348 YheO-like PAS domain 29 137 3.6E-36 T 28-03-2018 IPR013559 YheO-like AM348_RS07275 2c3a95a9940027bbbeb941eb92d8fe6c 240 Gene3D G3DSA:1.10.10.60 185 240 3.4E-6 T 28-03-2018 AM348_RS10635 62ea6625bd7c3c000b8abcefcf829388 143 Gene3D G3DSA:1.20.1290.10 3 143 6.9E-35 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS10635 62ea6625bd7c3c000b8abcefcf829388 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 7.2E-20 T 28-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS10635 62ea6625bd7c3c000b8abcefcf829388 143 SUPERFAMILY SSF69118 8 143 2.88E-42 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS10635 62ea6625bd7c3c000b8abcefcf829388 143 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 77 1.6E-15 T 28-03-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS12890 e50801936695c73352317cd66a5ba9b4 87 Gene3D G3DSA:3.55.50.10 5 76 2.3E-4 T 28-03-2018 AM348_RS12890 e50801936695c73352317cd66a5ba9b4 87 Pfam PF03927 NapD protein 5 81 4.1E-26 T 28-03-2018 IPR005623 Chaperone NapD, nitrate reductase assembly AM348_RS08585 0cf4ac07f65f2bd573cb20d2a61240e1 142 SUPERFAMILY SSF47148 6 139 1.57E-59 T 28-03-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS08585 0cf4ac07f65f2bd573cb20d2a61240e1 142 PIRSF PIRSF018505 1 141 1.1E-65 T 28-03-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS08585 0cf4ac07f65f2bd573cb20d2a61240e1 142 Pfam PF02287 Dehydratase small subunit 6 138 2.5E-58 T 28-03-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 SUPERFAMILY SSF46785 3 77 4.46E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 Gene3D G3DSA:1.10.10.10 1 74 5.3E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 SMART SM00895 97 226 4.0E-22 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 7.0E-23 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 SMART SM00345 14 73 7.0E-26 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.5E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.5E-9 T 28-03-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 SUPERFAMILY SSF48008 95 234 4.97E-29 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 Pfam PF07729 FCD domain 97 225 3.4E-21 T 28-03-2018 IPR011711 GntR, C-terminal AM348_RS02085 b83df8bce6e3987be569977b4c60dd64 257 Gene3D G3DSA:1.20.120.530 95 239 9.6E-28 T 28-03-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal AM348_RS14745 df6ecc77f830497bda5a296f561760dd 157 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 37 144 1.3E-31 T 28-03-2018 IPR006448 Putative phage terminase, small subunit, P27 family AM348_RS14745 df6ecc77f830497bda5a296f561760dd 157 Pfam PF05119 Phage terminase, small subunit 46 142 8.1E-24 T 28-03-2018 IPR006448 Putative phage terminase, small subunit, P27 family AM348_RS12335 29d92f25aa61852a0efff57dec0994c8 426 Gene3D G3DSA:2.40.160.60 26 426 5.6E-85 T 28-03-2018 AM348_RS12335 29d92f25aa61852a0efff57dec0994c8 426 SUPERFAMILY SSF56935 26 426 9.61E-107 T 28-03-2018 AM348_RS12335 29d92f25aa61852a0efff57dec0994c8 426 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 426 1.3E-143 T 28-03-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM348_RS18380 7f4c1fd432be27d9fa154e264584d765 781 Pfam PF13953 PapC C-terminal domain 697 762 3.5E-12 T 28-03-2018 IPR025949 PapC-like, C-terminal domain AM348_RS18380 7f4c1fd432be27d9fa154e264584d765 781 Pfam PF00577 Outer membrane usher protein 186 681 3.6E-25 T 28-03-2018 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 AM348_RS07695 54c0b606c858c765bdc5eadb79d2ef97 334 Pfam PF00174 Oxidoreductase molybdopterin binding domain 108 267 1.6E-29 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS07695 54c0b606c858c765bdc5eadb79d2ef97 334 Gene3D G3DSA:3.90.420.10 64 334 1.2E-62 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS07695 54c0b606c858c765bdc5eadb79d2ef97 334 SUPERFAMILY SSF56524 73 330 3.92E-93 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS07695 54c0b606c858c765bdc5eadb79d2ef97 334 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 2 334 54.677 T 28-03-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 AM348_RS01025 34263e03d9774aaf42786ad3d3e30ba6 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 1 115 7.0E-62 T 28-03-2018 AM348_RS01025 34263e03d9774aaf42786ad3d3e30ba6 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 23 106 1.7E-9 T 28-03-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like AM348_RS07770 95ef39e6f3c47306e23434d385c058c2 92 SUPERFAMILY SSF52038 1 89 9.29E-27 T 28-03-2018 IPR000468 Barstar (barnase inhibitor) AM348_RS07770 95ef39e6f3c47306e23434d385c058c2 92 Gene3D G3DSA:3.30.370.10 1 90 2.6E-16 T 28-03-2018 IPR000468 Barstar (barnase inhibitor) AM348_RS06530 bb69a2716f473a8375c79e93068794b9 191 SUPERFAMILY SSF110391 13 186 4.84E-49 T 28-03-2018 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 AM348_RS06530 bb69a2716f473a8375c79e93068794b9 191 PIRSF PIRSF016897 3 190 1.8E-53 T 28-03-2018 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 AM348_RS06530 bb69a2716f473a8375c79e93068794b9 191 Gene3D G3DSA:3.20.20.400 6 186 1.1E-51 T 28-03-2018 AM348_RS06530 bb69a2716f473a8375c79e93068794b9 191 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 14 185 1.1E-50 T 28-03-2018 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 2.6E-15 T 28-03-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 9.2E-28 T 28-03-2018 IPR001498 Impact, N-terminal AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 203 1.8E-84 T 28-03-2018 IPR015796 Impact family, bacterial/archaeal AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 SUPERFAMILY SSF54211 3 131 1.44E-42 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 Gene3D G3DSA:3.30.70.240 136 199 1.4E-19 T 28-03-2018 AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 Gene3D G3DSA:3.30.230.30 6 133 3.5E-38 T 28-03-2018 IPR001498 Impact, N-terminal AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 SUPERFAMILY SSF54980 136 203 6.83E-18 T 28-03-2018 IPR035647 EF-G domain III/V-like AM348_RS04735 7a479fc27542b824fa3bb833c6cfb2ba 204 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 28-03-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site AM348_RS06065 966f26ec300d3f61d5d4e22374de7fcf 378 SUPERFAMILY SSF111369 59 130 2.75E-11 T 28-03-2018 AM348_RS06065 966f26ec300d3f61d5d4e22374de7fcf 378 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 66 301 5.5E-8 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS06065 966f26ec300d3f61d5d4e22374de7fcf 378 Pfam PF00529 HlyD membrane-fusion protein of T1SS 38 367 1.5E-12 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS06065 966f26ec300d3f61d5d4e22374de7fcf 378 Gene3D G3DSA:2.40.50.100 212 356 0.001 T 28-03-2018 AM348_RS06065 966f26ec300d3f61d5d4e22374de7fcf 378 Gene3D G3DSA:2.40.50.100 63 140 9.9E-12 T 28-03-2018 AM348_RS06065 966f26ec300d3f61d5d4e22374de7fcf 378 SUPERFAMILY SSF111369 161 268 3.53E-7 T 28-03-2018 AM348_RS15215 30a6f3669e88609ff0641378c68d84d6 219 Gene3D G3DSA:1.10.3680.10 75 217 4.8E-16 T 28-03-2018 IPR029024 TerB-like AM348_RS15215 30a6f3669e88609ff0641378c68d84d6 219 SUPERFAMILY SSF158682 88 210 4.45E-19 T 28-03-2018 AM348_RS15215 30a6f3669e88609ff0641378c68d84d6 219 Pfam PF04391 Protein of unknown function (DUF533) 33 209 2.3E-49 T 28-03-2018 IPR007486 Inner membrane protein YebE AM348_RS18730 4a0d5e202b19b6e05d72f5dff6c3ebbd 252 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 17 245 6.8E-84 T 28-03-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM348_RS18730 4a0d5e202b19b6e05d72f5dff6c3ebbd 252 Pfam PF01487 Type I 3-dehydroquinase 20 246 4.2E-69 T 28-03-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM348_RS18730 4a0d5e202b19b6e05d72f5dff6c3ebbd 252 ProSitePatterns PS01028 Dehydroquinase class I active site. 114 144 - T 28-03-2018 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM348_RS18730 4a0d5e202b19b6e05d72f5dff6c3ebbd 252 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 17 249 41.637 T 28-03-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 AM348_RS18730 4a0d5e202b19b6e05d72f5dff6c3ebbd 252 SUPERFAMILY SSF51569 1 251 3.19E-82 T 28-03-2018 AM348_RS18730 4a0d5e202b19b6e05d72f5dff6c3ebbd 252 Gene3D G3DSA:3.20.20.70 1 252 8.9E-84 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS18805 61c76e5436cff9728f0e814291b2d965 273 Pfam PF01497 Periplasmic binding protein 23 247 5.0E-30 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS18805 61c76e5436cff9728f0e814291b2d965 273 Gene3D G3DSA:3.40.50.1980 20 126 3.1E-25 T 28-03-2018 AM348_RS18805 61c76e5436cff9728f0e814291b2d965 273 Gene3D G3DSA:3.40.50.1980 127 270 2.9E-24 T 28-03-2018 AM348_RS18805 61c76e5436cff9728f0e814291b2d965 273 SUPERFAMILY SSF53807 19 266 8.63E-50 T 28-03-2018 AM348_RS14880 2869d0400c8838dc4840be50502120a4 380 Gene3D G3DSA:3.90.260.10 204 320 9.0E-7 T 28-03-2018 IPR002931 Transglutaminase-like AM348_RS14880 2869d0400c8838dc4840be50502120a4 380 SUPERFAMILY SSF54001 274 318 9.16E-28 T 28-03-2018 AM348_RS14880 2869d0400c8838dc4840be50502120a4 380 SUPERFAMILY SSF54001 46 244 9.16E-28 T 28-03-2018 AM348_RS14880 2869d0400c8838dc4840be50502120a4 380 SMART SM00460 212 295 1.3E-15 T 28-03-2018 IPR002931 Transglutaminase-like AM348_RS14880 2869d0400c8838dc4840be50502120a4 380 Pfam PF01841 Transglutaminase-like superfamily 167 293 4.5E-27 T 28-03-2018 IPR002931 Transglutaminase-like AM348_RS02555 7e4f7304a3d266c928724fa9626c3dcd 102 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 6 101 2.0E-41 T 28-03-2018 IPR020044 PRD domain protein, EF0829/AHA3910 AM348_RS02555 7e4f7304a3d266c928724fa9626c3dcd 102 SUPERFAMILY SSF63520 29 99 5.36E-7 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS02555 7e4f7304a3d266c928724fa9626c3dcd 102 Gene3D G3DSA:1.10.1790.10 1 102 1.9E-9 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS01470 cb813bd915f19c84e5cdac0ebff9f5df 95 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 37 91 1.2E-4 T 28-03-2018 AM348_RS01470 cb813bd915f19c84e5cdac0ebff9f5df 95 SUPERFAMILY SSF54862 40 90 3.41E-8 T 28-03-2018 AM348_RS01470 cb813bd915f19c84e5cdac0ebff9f5df 95 PIRSF PIRSF036548 1 95 1.1E-37 T 28-03-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 AM348_RS01470 cb813bd915f19c84e5cdac0ebff9f5df 95 Gene3D G3DSA:3.30.70.20 38 71 4.2E-5 T 28-03-2018 AM348_RS16265 b55fc6e3ae671e0edc50666b6fe5cb3c 247 SUPERFAMILY SSF49373 162 246 8.63E-5 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS16265 b55fc6e3ae671e0edc50666b6fe5cb3c 247 SMART SM00635 163 243 1.2E-7 T 28-03-2018 IPR003343 Bacterial Ig-like, group 2 AM348_RS16265 b55fc6e3ae671e0edc50666b6fe5cb3c 247 Pfam PF02368 Bacterial Ig-like domain (group 2) 163 241 1.3E-7 T 28-03-2018 IPR003343 Bacterial Ig-like, group 2 AM348_RS16265 b55fc6e3ae671e0edc50666b6fe5cb3c 247 Gene3D G3DSA:2.60.40.1080 159 247 2.8E-10 T 28-03-2018 AM348_RS04985 c26fb2efd90a83fca3a27b915e60cb7f 451 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 443 1.3E-260 T 28-03-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 AM348_RS04985 c26fb2efd90a83fca3a27b915e60cb7f 451 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 448 41.79 T 28-03-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 AM348_RS07420 56aa23d4e137982cf428a6ee5372d2cc 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 7.7E-44 T 28-03-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07420 56aa23d4e137982cf428a6ee5372d2cc 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 2.9E-47 T 28-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07420 56aa23d4e137982cf428a6ee5372d2cc 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.115 T 28-03-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07420 56aa23d4e137982cf428a6ee5372d2cc 117 SUPERFAMILY SSF53137 3 115 5.45E-54 T 28-03-2018 AM348_RS07420 56aa23d4e137982cf428a6ee5372d2cc 117 Gene3D G3DSA:3.30.420.100 1 117 1.5E-39 T 28-03-2018 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 SMART SM00279 162 197 1.2E-11 T 28-03-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 154 1.5E-27 T 28-03-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 249 4.8E-26 T 28-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 SMART SM00475 3 250 1.1E-105 T 28-03-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 Gene3D G3DSA:3.40.50.1010 3 173 2.7E-39 T 28-03-2018 IPR029060 PIN domain-like AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 SUPERFAMILY SSF47807 160 243 1.5E-24 T 28-03-2018 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 Gene3D G3DSA:1.10.150.20 174 251 4.5E-25 T 28-03-2018 AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 SUPERFAMILY SSF88723 4 159 5.1E-38 T 28-03-2018 IPR029060 PIN domain-like AM348_RS09910 232d677f5d948782880fb13adcfe76e4 251 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 46.034 T 28-03-2018 IPR022895 Flap endonuclease Xni GO:0048256 AM348_RS15775 e78a941c69a6c05c8f40823b5fee9995 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.681 T 28-03-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS15775 e78a941c69a6c05c8f40823b5fee9995 284 Pfam PF00793 DAHP synthetase I family 10 274 3.2E-68 T 28-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS15775 e78a941c69a6c05c8f40823b5fee9995 284 Gene3D G3DSA:3.20.20.70 17 280 5.2E-68 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS15775 e78a941c69a6c05c8f40823b5fee9995 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 3.8E-119 T 28-03-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS15775 e78a941c69a6c05c8f40823b5fee9995 284 SUPERFAMILY SSF51569 3 277 1.19E-103 T 28-03-2018 AM348_RS20480 bd8b8cd234fb02f0719d9d86aca0f6fa 109 PIRSF PIRSF006223 2 109 2.1E-46 T 28-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE AM348_RS20480 bd8b8cd234fb02f0719d9d86aca0f6fa 109 Pfam PF04358 DsrC like protein 4 109 4.7E-46 T 28-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE AM348_RS20480 bd8b8cd234fb02f0719d9d86aca0f6fa 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 4 109 5.9E-50 T 28-03-2018 IPR007453 Sulphur transfer protein DsrC/TusE AM348_RS20480 bd8b8cd234fb02f0719d9d86aca0f6fa 109 Gene3D G3DSA:1.10.10.370 40 108 3.1E-33 T 28-03-2018 AM348_RS20480 bd8b8cd234fb02f0719d9d86aca0f6fa 109 SUPERFAMILY SSF69721 2 109 6.54E-42 T 28-03-2018 IPR025526 DsrC-like domain AM348_RS20480 bd8b8cd234fb02f0719d9d86aca0f6fa 109 Gene3D G3DSA:3.30.1420.10 2 39 3.3E-15 T 28-03-2018 AM348_RS07740 8a1c686a79f8efba364a161027984e8a 1266 Pfam PF13502 AsmA-like C-terminal region 1010 1252 7.5E-62 T 28-03-2018 IPR032712 AsmA-like, C-terminal AM348_RS07740 8a1c686a79f8efba364a161027984e8a 1266 Pfam PF13116 Protein of unknown function 505 788 5.0E-96 T 28-03-2018 IPR025263 Domain of unknown function DUF3971 AM348_RS07740 8a1c686a79f8efba364a161027984e8a 1266 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1262 0.0 T 28-03-2018 IPR011836 Conserved hypothetical protein CHP02099 AM348_RS19305 eb2543895ccb2793b61064d02574c2c1 195 Gene3D G3DSA:3.40.50.300 1 194 2.8E-41 T 28-03-2018 AM348_RS19305 eb2543895ccb2793b61064d02574c2c1 195 SUPERFAMILY SSF52540 2 193 5.22E-41 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19305 eb2543895ccb2793b61064d02574c2c1 195 SMART SM00382 26 194 2.4E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS19305 eb2543895ccb2793b61064d02574c2c1 195 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS19305 eb2543895ccb2793b61064d02574c2c1 195 Pfam PF00005 ABC transporter 18 150 5.4E-19 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06680 c24c4347e7bb82f8894dcc964e7d1e21 405 Pfam PF07690 Major Facilitator Superfamily 25 271 2.3E-15 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06680 c24c4347e7bb82f8894dcc964e7d1e21 405 Hamap MF_01118 UPF0226 membrane protein . 3 394 29.396 T 28-03-2018 IPR023008 Uncharacterised protein family UPF0226, major facilitator superfamily AM348_RS06680 c24c4347e7bb82f8894dcc964e7d1e21 405 Gene3D G3DSA:1.20.1250.20 13 209 6.0E-19 T 28-03-2018 AM348_RS06680 c24c4347e7bb82f8894dcc964e7d1e21 405 Gene3D G3DSA:1.20.1250.20 215 401 1.6E-16 T 28-03-2018 AM348_RS06680 c24c4347e7bb82f8894dcc964e7d1e21 405 SUPERFAMILY SSF103473 17 396 3.27E-47 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS22330 b42920dde1f147fd3dd292370dfcd815 137 Hamap MF_00907 Proofreading thioesterase EntH [entH]. 1 137 55.099 T 28-03-2018 IPR026576 Proofreading thioesterase EntH GO:0009239|GO:0016790 AM348_RS22330 b42920dde1f147fd3dd292370dfcd815 137 Pfam PF03061 Thioesterase superfamily 50 127 1.8E-17 T 28-03-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 AM348_RS22330 b42920dde1f147fd3dd292370dfcd815 137 Gene3D G3DSA:3.10.129.10 1 136 1.2E-27 T 28-03-2018 AM348_RS22330 b42920dde1f147fd3dd292370dfcd815 137 SUPERFAMILY SSF54637 1 135 2.99E-31 T 28-03-2018 IPR029069 HotDog domain AM348_RS22330 b42920dde1f147fd3dd292370dfcd815 137 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 19 134 1.6E-46 T 28-03-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 AM348_RS13585 452ca9365378542f68c8343a3abd6418 106 SUPERFAMILY SSF54736 22 105 1.99E-33 T 28-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM348_RS13585 452ca9365378542f68c8343a3abd6418 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 5.8E-34 T 28-03-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 AM348_RS13585 452ca9365378542f68c8343a3abd6418 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 14 101 28.362 T 28-03-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS AM348_RS13585 452ca9365378542f68c8343a3abd6418 106 Gene3D G3DSA:3.30.1390.10 13 105 2.3E-37 T 28-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM348_RS18535 f739e2eda9e5c45475dc8ad4f43b37f3 272 Pfam PF00005 ABC transporter 39 188 7.0E-37 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS18535 f739e2eda9e5c45475dc8ad4f43b37f3 272 SMART SM00382 48 236 2.7E-20 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS18535 f739e2eda9e5c45475dc8ad4f43b37f3 272 SUPERFAMILY SSF52540 24 258 3.9E-80 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18535 f739e2eda9e5c45475dc8ad4f43b37f3 272 PIRSF PIRSF039085 20 264 7.7E-104 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS18535 f739e2eda9e5c45475dc8ad4f43b37f3 272 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS18535 f739e2eda9e5c45475dc8ad4f43b37f3 272 Gene3D G3DSA:3.40.50.300 20 271 1.3E-79 T 28-03-2018 AM348_RS04680 1eb7b648daae985b4c0013c510b6d2d5 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 1.1E-46 T 28-03-2018 IPR009383 Protein of unknown function DUF1040 AM348_RS04680 1eb7b648daae985b4c0013c510b6d2d5 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 6.0E-44 T 28-03-2018 IPR009383 Protein of unknown function DUF1040 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 Pfam PF03222 Tryptophan/tyrosine permease family 3 390 1.5E-140 T 28-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 384 6.5E-145 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 337 356 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 182 204 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 282 301 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 148 168 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 10 33 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 82 102 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 221 240 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 37 56 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 PRINTS PR00166 Aromatic amino acid permease signature 316 334 2.2E-92 T 28-03-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 AM348_RS14900 e568e4cb53c84b12eddecd8cfffabfac 403 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 28-03-2018 IPR013061 Tryptophan/tryrosine permease, conserved site AM348_RS22490 b6577a2ab9258c87031531608f835b77 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.1E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS22490 b6577a2ab9258c87031531608f835b77 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS22490 b6577a2ab9258c87031531608f835b77 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 1.2E-10 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS22490 b6577a2ab9258c87031531608f835b77 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 28-03-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site AM348_RS22490 b6577a2ab9258c87031531608f835b77 193 SUPERFAMILY SSF46689 3 76 1.8E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS22490 b6577a2ab9258c87031531608f835b77 193 Gene3D G3DSA:1.10.357.10 1 193 1.3E-25 T 28-03-2018 AM348_RS06455 8f4b9fb331d3af4583b5de4997b0f2f7 167 Gene3D G3DSA:1.10.10.10 1 155 6.1E-28 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06455 8f4b9fb331d3af4583b5de4997b0f2f7 167 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 5 143 3.9E-30 T 28-03-2018 IPR000944 Transcription regulator Rrf2-type AM348_RS06455 8f4b9fb331d3af4583b5de4997b0f2f7 167 SUPERFAMILY SSF46785 5 146 3.34E-29 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06455 8f4b9fb331d3af4583b5de4997b0f2f7 167 Pfam PF02082 Transcriptional regulator 4 85 6.0E-25 T 28-03-2018 IPR000944 Transcription regulator Rrf2-type AM348_RS06455 8f4b9fb331d3af4583b5de4997b0f2f7 167 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 51 69 - T 28-03-2018 IPR030489 Transcription regulator Rrf2-type, conserved site AM348_RS03290 bab540a81e050a6b84cc1b59ce81d865 228 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 4 220 1.1E-109 T 28-03-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03290 bab540a81e050a6b84cc1b59ce81d865 228 Pfam PF00005 ABC transporter 26 180 9.1E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03290 bab540a81e050a6b84cc1b59ce81d865 228 Gene3D G3DSA:3.40.50.300 1 227 5.5E-46 T 28-03-2018 AM348_RS03290 bab540a81e050a6b84cc1b59ce81d865 228 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS03290 bab540a81e050a6b84cc1b59ce81d865 228 SMART SM00382 35 218 2.5E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03290 bab540a81e050a6b84cc1b59ce81d865 228 SUPERFAMILY SSF52540 3 225 1.08E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03980 8fb826445a0310387437e96729423678 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.552 T 28-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS03980 8fb826445a0310387437e96729423678 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 1.2E-48 T 28-03-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS03980 8fb826445a0310387437e96729423678 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 4.7E-31 T 28-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS03980 8fb826445a0310387437e96729423678 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 1.0E-27 T 28-03-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS03980 8fb826445a0310387437e96729423678 121 Gene3D G3DSA:3.30.1390.10 51 121 1.5E-30 T 28-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM348_RS03980 8fb826445a0310387437e96729423678 121 SUPERFAMILY SSF48300 3 57 1.57E-16 T 28-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS03980 8fb826445a0310387437e96729423678 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 6.0E-18 T 28-03-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS03980 8fb826445a0310387437e96729423678 121 SUPERFAMILY SSF54736 50 121 5.41E-25 T 28-03-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like AM348_RS03980 8fb826445a0310387437e96729423678 121 Gene3D G3DSA:1.20.5.710 2 50 1.5E-18 T 28-03-2018 AM348_RS18020 8ee4611234f88e2389fac16b934f4a83 114 PIRSF PIRSF002599 8 109 8.7E-16 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS18020 8ee4611234f88e2389fac16b934f4a83 114 Pfam PF06961 Protein of unknown function (DUF1294) 33 87 4.1E-23 T 28-03-2018 IPR010718 Protein of unknown function DUF1294 AM348_RS12325 d100e5c14cd5cc49fb1068760367f8d7 313 Pfam PF01226 Formate/nitrite transporter 43 279 1.9E-39 T 28-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM348_RS12325 d100e5c14cd5cc49fb1068760367f8d7 313 Gene3D G3DSA:1.20.1080.10 34 295 2.0E-49 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 Pfam PF00267 Gram-negative porin 26 335 5.7E-91 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 SUPERFAMILY SSF56935 21 335 1.28E-58 T 28-03-2018 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00183 E.coli/Salmonella-type porin signature 21 37 3.7E-37 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00183 E.coli/Salmonella-type porin signature 147 169 3.7E-37 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00183 E.coli/Salmonella-type porin signature 256 275 3.7E-37 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00183 E.coli/Salmonella-type porin signature 92 114 3.7E-37 T 28-03-2018 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 92 102 1.2E-10 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 226 238 1.2E-10 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 295 312 1.2E-10 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 49 60 1.2E-10 T 28-03-2018 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 AM348_RS02075 072d308b2de4bb39e789f297fe48500d 335 Gene3D G3DSA:2.40.160.10 30 335 5.7E-45 T 28-03-2018 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 3.8E-5 T 28-03-2018 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 3.8E-5 T 28-03-2018 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 SUPERFAMILY SSF51905 283 374 6.32E-43 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 SUPERFAMILY SSF51905 2 182 6.32E-43 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 SUPERFAMILY SSF54373 180 283 1.02E-23 T 28-03-2018 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 Pfam PF01494 FAD binding domain 6 185 2.9E-12 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS18760 68a6b7c50ff7b1eeeee1f5293801bb8c 429 Gene3D G3DSA:3.50.50.60 1 364 7.1E-41 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00970 0cb6c91e0d3950090a42a7a7e3bacdf5 284 Gene3D G3DSA:3.30.1300.10 180 283 1.6E-28 T 28-03-2018 AM348_RS00970 0cb6c91e0d3950090a42a7a7e3bacdf5 284 SUPERFAMILY SSF52374 3 280 2.19E-102 T 28-03-2018 AM348_RS00970 0cb6c91e0d3950090a42a7a7e3bacdf5 284 Gene3D G3DSA:3.40.50.620 1 176 2.1E-75 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS00970 0cb6c91e0d3950090a42a7a7e3bacdf5 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.26 T 28-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AM348_RS00970 0cb6c91e0d3950090a42a7a7e3bacdf5 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 2 280 8.5E-120 T 28-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AM348_RS00970 0cb6c91e0d3950090a42a7a7e3bacdf5 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 4.6E-101 T 28-03-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 AM348_RS19160 a492d99e8fdb1ecd1882d073db432e08 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 3 129 38.655 T 28-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AM348_RS19160 a492d99e8fdb1ecd1882d073db432e08 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 5 135 1.6E-66 T 28-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AM348_RS19160 a492d99e8fdb1ecd1882d073db432e08 137 Gene3D G3DSA:2.170.150.20 1 137 4.3E-60 T 28-03-2018 AM348_RS19160 a492d99e8fdb1ecd1882d073db432e08 137 Pfam PF01641 SelR domain 9 127 2.2E-55 T 28-03-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 AM348_RS19160 a492d99e8fdb1ecd1882d073db432e08 137 SUPERFAMILY SSF51316 5 133 1.95E-60 T 28-03-2018 IPR011057 Mss4-like AM348_RS07690 e603ee96fb758f348875c41dae2955a2 199 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 3 199 21.775 T 28-03-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 AM348_RS07690 e603ee96fb758f348875c41dae2955a2 199 Pfam PF01794 Ferric reductase like transmembrane component 51 161 6.5E-15 T 28-03-2018 IPR013130 Ferric reductase transmembrane component-like domain AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 4.9E-51 T 28-03-2018 IPR023214 HAD-like domain AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 SUPERFAMILY SSF56784 1 262 5.52E-60 T 28-03-2018 IPR023214 HAD-like domain AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 3.7E-56 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 Gene3D G3DSA:3.40.50.1000 1 267 1.2E-29 T 28-03-2018 IPR023214 HAD-like domain AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 272 64.698 T 28-03-2018 IPR023938 HMP-PP phosphatase GO:0016818 AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 4.8E-49 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 28-03-2018 AM348_RS23155 1ea4bd2eb31c8b98105130c5161ea2ee 272 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 28-03-2018 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 Gene3D G3DSA:3.40.190.10 181 269 1.0E-8 T 28-03-2018 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.3E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 Gene3D G3DSA:1.10.10.10 7 89 2.1E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 Pfam PF03466 LysR substrate binding domain 99 296 2.6E-28 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 SUPERFAMILY SSF46785 8 112 1.56E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 Gene3D G3DSA:3.40.190.10 97 180 2.0E-9 T 28-03-2018 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 SUPERFAMILY SSF53850 99 298 1.87E-27 T 28-03-2018 AM348_RS08305 9f370cbf927c6fc4ad68041ccddf73c5 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 7.8E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19720 63ed6bcfd37e7ec847886f7066ff0b96 174 SUPERFAMILY SSF53271 8 173 1.31E-34 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS19720 63ed6bcfd37e7ec847886f7066ff0b96 174 Gene3D G3DSA:3.40.50.2020 2 174 7.7E-26 T 28-03-2018 AM348_RS19720 63ed6bcfd37e7ec847886f7066ff0b96 174 Pfam PF00156 Phosphoribosyl transferase domain 9 140 8.0E-17 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS15255 fb3e304baf1dd52bbd8964a531618cab 213 ProSitePatterns PS00125 Serine/threonine specific protein phosphatases signature. 76 81 - T 28-03-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 AM348_RS15255 fb3e304baf1dd52bbd8964a531618cab 213 SUPERFAMILY SSF56300 17 212 5.94E-42 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS15255 fb3e304baf1dd52bbd8964a531618cab 213 Pfam PF00149 Calcineurin-like phosphoesterase 18 183 5.8E-14 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS15255 fb3e304baf1dd52bbd8964a531618cab 213 Gene3D G3DSA:3.60.21.10 6 213 1.3E-34 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS19795 3fbfcf8c2179ad92ac526fc952e8ad0e 213 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 200 7.4E-69 T 28-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AM348_RS19795 3fbfcf8c2179ad92ac526fc952e8ad0e 213 Pfam PF02223 Thymidylate kinase 8 200 7.9E-60 T 28-03-2018 AM348_RS19795 3fbfcf8c2179ad92ac526fc952e8ad0e 213 ProSitePatterns PS01331 Thymidylate kinase signature. 97 109 - T 28-03-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AM348_RS19795 3fbfcf8c2179ad92ac526fc952e8ad0e 213 Gene3D G3DSA:3.40.50.300 3 211 3.3E-48 T 28-03-2018 AM348_RS19795 3fbfcf8c2179ad92ac526fc952e8ad0e 213 SUPERFAMILY SSF52540 3 210 1.13E-53 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19795 3fbfcf8c2179ad92ac526fc952e8ad0e 213 Hamap MF_00165 Thymidylate kinase [tmk]. 4 208 28.493 T 28-03-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 AM348_RS08485 af20aa442645bc1c7773537e6376fcf6 149 SUPERFAMILY SSF51197 3 142 6.87E-23 T 28-03-2018 AM348_RS08485 af20aa442645bc1c7773537e6376fcf6 149 Pfam PF04074 Domain of unknown function (DUF386) 3 139 1.7E-24 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS08485 af20aa442645bc1c7773537e6376fcf6 149 Gene3D G3DSA:2.60.120.370 2 142 1.4E-23 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 SUPERFAMILY SSF46785 3 133 2.36E-31 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 1.3E-10 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 1.3E-10 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 1.3E-10 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 1.3E-10 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 Pfam PF01047 MarR family 29 85 4.1E-14 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 SMART SM00347 24 122 9.0E-20 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 Gene3D G3DSA:1.10.10.10 1 134 4.3E-26 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10150 cf5af9ed4cf1091166f397105b5c413c 134 ProSitePatterns PS01117 MarR-type HTH domain signature. 61 95 - T 28-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM348_RS18305 bbf659d727121d7df03d499287ebd2b3 232 Gene3D G3DSA:3.30.2350.10 16 231 5.3E-55 T 28-03-2018 AM348_RS18305 bbf659d727121d7df03d499287ebd2b3 232 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 28-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS18305 bbf659d727121d7df03d499287ebd2b3 232 SUPERFAMILY SSF55120 11 226 4.48E-57 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS18305 bbf659d727121d7df03d499287ebd2b3 232 Pfam PF00849 RNA pseudouridylate synthase 25 181 1.1E-28 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS22060 aadc219516e1b3c9fc65f6ee01935808 241 Pfam PF00005 ABC transporter 17 165 3.7E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS22060 aadc219516e1b3c9fc65f6ee01935808 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22060 aadc219516e1b3c9fc65f6ee01935808 241 SMART SM00382 26 213 1.9E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22060 aadc219516e1b3c9fc65f6ee01935808 241 PIRSF PIRSF039085 1 241 6.1E-106 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS22060 aadc219516e1b3c9fc65f6ee01935808 241 SUPERFAMILY SSF52540 1 235 4.06E-77 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22060 aadc219516e1b3c9fc65f6ee01935808 241 Gene3D G3DSA:3.40.50.300 1 241 1.5E-72 T 28-03-2018 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 SUPERFAMILY SSF52374 6 331 1.69E-75 T 28-03-2018 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 13 22 - T 28-03-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 146 167 1.0E-19 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 1.0E-19 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 17 33 1.0E-19 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 198 208 1.0E-19 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 1.3E-51 T 28-03-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 Gene3D G3DSA:3.40.50.620 3 204 1.6E-56 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 Gene3D G3DSA:1.10.240.10 205 327 1.4E-27 T 28-03-2018 AM348_RS18365 794a5252da766707e93b7eff209d8d21 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 331 3.4E-67 T 28-03-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 140 159 4.4E-43 T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 189 211 4.4E-43 T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 24 47 4.4E-43 T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 62 86 4.4E-43 T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 220 233 4.4E-43 T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 Gene3D G3DSA:1.20.950.20 13 244 8.4E-43 T 28-03-2018 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 SUPERFAMILY SSF81342 16 240 3.06E-39 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 ProSitePatterns PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2. 189 206 - T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 Pfam PF01292 Prokaryotic cytochrome b561 22 228 1.5E-34 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS00260 f357cddbdac3ae0fa8832a5b429bb360 244 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 20 233 1.1E-73 T 28-03-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 28-03-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 Gene3D G3DSA:3.40.50.300 283 384 2.0E-25 T 28-03-2018 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 1.2E-75 T 28-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 2.9E-76 T 28-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 Gene3D G3DSA:3.40.50.300 5 150 2.8E-27 T 28-03-2018 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 Gene3D G3DSA:3.40.50.300 151 282 2.5E-32 T 28-03-2018 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 Gene3D G3DSA:3.40.50.300 385 662 3.3E-52 T 28-03-2018 AM348_RS04895 eefeb19cdc0cf7afadbec25a4ce8586f 720 SUPERFAMILY SSF52540 7 642 2.32E-182 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 Gene3D G3DSA:1.10.150.210 135 169 2.6E-23 T 28-03-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 97 315 6.0E-93 T 28-03-2018 AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 Gene3D G3DSA:3.30.70.260 88 134 0.0033 T 28-03-2018 AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 Pfam PF12710 haloacid dehalogenase-like hydrolase 118 280 3.3E-16 T 28-03-2018 AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 112 282 2.0E-24 T 28-03-2018 AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 SUPERFAMILY SSF56784 111 315 1.1E-45 T 28-03-2018 IPR023214 HAD-like domain AM348_RS01760 6fce19b52dc94036a2d2b54d2003d1c4 322 Gene3D G3DSA:3.40.50.1000 170 315 3.9E-25 T 28-03-2018 IPR023214 HAD-like domain AM348_RS05950 d7842778e0791ea6380d4ee15dc75f61 344 Pfam PF00535 Glycosyl transferase family 2 8 135 9.3E-35 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS05950 d7842778e0791ea6380d4ee15dc75f61 344 SUPERFAMILY SSF53448 6 225 2.16E-53 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS05950 d7842778e0791ea6380d4ee15dc75f61 344 Gene3D G3DSA:3.90.550.10 2 270 1.5E-49 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 9 306 1.3E-135 T 28-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 1 309 63.187 T 28-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 SUPERFAMILY SSF56596 5 308 4.18E-122 T 28-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 Gene3D G3DSA:3.30.54.10 268 308 1.6E-9 T 28-03-2018 AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 Gene3D G3DSA:3.30.54.10 187 246 2.3E-30 T 28-03-2018 AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 308 1.3E-153 T 28-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM348_RS18035 caa5e0f2ee049ecc774b4e75bae255e7 309 Gene3D G3DSA:3.50.14.10 7 186 1.1E-57 T 28-03-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 Gene3D G3DSA:3.40.50.300 292 569 6.4E-35 T 28-03-2018 AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 Gene3D G3DSA:3.40.50.300 1 290 3.0E-46 T 28-03-2018 AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 Pfam PF00005 ABC transporter 319 443 3.7E-14 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 Pfam PF00005 ABC transporter 21 153 3.0E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 SMART SM00382 322 488 8.6E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 SMART SM00382 29 206 1.4E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 SUPERFAMILY SSF52540 289 501 1.16E-35 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS17410 b27932bea5d37bdb8ebc0a29fa3f9712 571 SUPERFAMILY SSF52540 17 204 3.96E-42 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13805 11312c493f0fc4a537d91a4e4ba7eb58 292 SUPERFAMILY SSF53448 4 289 1.54E-96 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13805 11312c493f0fc4a537d91a4e4ba7eb58 292 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 290 1.7E-162 T 28-03-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM348_RS13805 11312c493f0fc4a537d91a4e4ba7eb58 292 Pfam PF00483 Nucleotidyl transferase 5 241 2.0E-73 T 28-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM348_RS13805 11312c493f0fc4a537d91a4e4ba7eb58 292 Gene3D G3DSA:3.90.550.10 5 292 3.7E-75 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 Gene3D G3DSA:3.40.50.150 29 274 5.2E-85 T 28-03-2018 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 SUPERFAMILY SSF51905 591 679 1.85E-27 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 SUPERFAMILY SSF51905 287 498 1.85E-27 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 27 677 28.083 T 28-03-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 138 264 3.8E-49 T 28-03-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 287 682 3.7E-152 T 28-03-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 SUPERFAMILY SSF53335 152 262 3.79E-5 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 Gene3D G3DSA:3.50.50.60 275 686 1.4E-42 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12400 cbb28c8d15c4503f2fe99b34a6fc519e 686 Pfam PF01266 FAD dependent oxidoreductase 287 652 3.4E-43 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 SMART SM00388 145 205 2.6E-10 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 252 357 4.3E-18 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 SUPERFAMILY SSF55874 195 356 1.18E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 Pfam PF00512 His Kinase A (phospho-acceptor) domain 147 203 3.7E-10 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 SMART SM00387 252 360 7.6E-25 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 302 3.8E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 337 3.8E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 Gene3D G3DSA:1.10.287.130 135 201 1.9E-8 T 28-03-2018 AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 Gene3D G3DSA:3.30.565.10 212 360 2.8E-27 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS03200 e0c411ab5744fb9022c8891c4c709985 360 SUPERFAMILY SSF47384 129 202 1.84E-11 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 1.1E-136 T 28-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 485 38.76 T 28-03-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 357 482 1.0E-22 T 28-03-2018 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 1.0E-28 T 28-03-2018 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Gene3D G3DSA:1.10.1040.10 210 487 1.3E-87 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Gene3D G3DSA:3.40.50.720 56 208 6.5E-52 T 28-03-2018 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Gene3D G3DSA:3.40.50.720 1 42 7.3E-5 T 28-03-2018 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 SUPERFAMILY SSF48179 349 484 1.7E-40 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 SUPERFAMILY SSF51735 30 209 6.06E-58 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS05080 2ff15d4118010972084375b3687632fb 491 SUPERFAMILY SSF48179 210 370 3.06E-42 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS05080 2ff15d4118010972084375b3687632fb 491 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.4E-58 T 28-03-2018 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 AM348_RS14570 131f03ab4881e14fff48b8e5dc656591 75 Pfam PF13986 Domain of unknown function (DUF4224) 8 52 2.0E-17 T 28-03-2018 IPR025319 Domain of unknown function DUF4224 AM348_RS16225 f3fd5cc7403a9dcb14d7a4a0f420f51f 146 Gene3D G3DSA:3.50.50.60 3 139 5.2E-4 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS14055 406bea54ca07815170b4d389b1476ee7 554 ProDom PD025428 SUBUNIT GLYCEROL DEHYDRATASE LARGE LYASE DHAB ALPHA DIOL B12-DEPENDENT METABOLISM 8 549 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS14055 406bea54ca07815170b4d389b1476ee7 554 Pfam PF02286 Dehydratase large subunit 1 551 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS14055 406bea54ca07815170b4d389b1476ee7 554 PIRSF PIRSF018507 1 554 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS14055 406bea54ca07815170b4d389b1476ee7 554 Gene3D G3DSA:3.20.20.350 2 553 0.0 T 28-03-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 AM348_RS14055 406bea54ca07815170b4d389b1476ee7 554 SUPERFAMILY SSF51703 1 553 5.49E-293 T 28-03-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 Gene3D G3DSA:1.10.1370.10 41 493 1.4E-27 T 28-03-2018 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 14 494 5.9E-98 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PIRSF PIRSF006615 2 495 1.8E-193 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 SUPERFAMILY SSF55486 3 495 2.93E-120 T 28-03-2018 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 148 168 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 331 350 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 264 283 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 446 464 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 244 263 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 401 422 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS17925 48e6d5e56bd045bd911908d4c02e8fb4 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 291 307 8.5E-46 T 28-03-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 AM348_RS09615 9e15d0bf7df3689f6cac875e952ff2ef 460 SUPERFAMILY SSF51556 117 411 2.3E-70 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS09615 9e15d0bf7df3689f6cac875e952ff2ef 460 SUPERFAMILY SSF51338 81 124 1.01E-6 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS09615 9e15d0bf7df3689f6cac875e952ff2ef 460 Gene3D G3DSA:3.20.20.140 132 405 3.6E-28 T 28-03-2018 AM348_RS09615 9e15d0bf7df3689f6cac875e952ff2ef 460 Gene3D G3DSA:2.30.40.10 67 131 1.1E-9 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS09615 9e15d0bf7df3689f6cac875e952ff2ef 460 Pfam PF07969 Amidohydrolase family 221 432 3.1E-10 T 28-03-2018 IPR013108 Amidohydrolase 3 AM348_RS02120 ab1feefba18551e1b047ecdf7062dab2 517 Pfam PF02652 L-lactate permease 8 508 1.5E-123 T 28-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AM348_RS02120 ab1feefba18551e1b047ecdf7062dab2 517 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 509 4.2E-120 T 28-03-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 AM348_RS13480 df8e421b1e36e2413b672a0a807c69e5 242 PIRSF PIRSF039085 1 242 9.4E-85 T 28-03-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 AM348_RS13480 df8e421b1e36e2413b672a0a807c69e5 242 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS13480 df8e421b1e36e2413b672a0a807c69e5 242 SUPERFAMILY SSF52540 3 234 2.15E-69 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13480 df8e421b1e36e2413b672a0a807c69e5 242 Gene3D G3DSA:3.40.50.300 1 242 8.9E-66 T 28-03-2018 AM348_RS13480 df8e421b1e36e2413b672a0a807c69e5 242 Pfam PF00005 ABC transporter 20 170 1.6E-34 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13480 df8e421b1e36e2413b672a0a807c69e5 242 SMART SM00382 27 218 1.2E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.6E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.6E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.6E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 Gene3D G3DSA:3.40.190.10 89 174 1.1E-15 T 28-03-2018 AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.0E-22 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 SUPERFAMILY SSF46785 1 86 4.62E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 Gene3D G3DSA:1.10.10.10 1 86 7.3E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 Pfam PF03466 LysR substrate binding domain 89 287 9.9E-43 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 SUPERFAMILY SSF53850 90 289 3.71E-41 T 28-03-2018 AM348_RS03445 d36228ddc6e3c351f39dfb3d518f5537 296 Gene3D G3DSA:3.40.190.10 175 265 1.1E-22 T 28-03-2018 AM348_RS12845 205a083f0e98e7ec6cc13af8e9d8bc01 350 PIRSF PIRSF006268 2 346 7.7E-91 T 28-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 AM348_RS12845 205a083f0e98e7ec6cc13af8e9d8bc01 350 Gene3D G3DSA:3.10.520.10 43 338 7.6E-52 T 28-03-2018 AM348_RS12845 205a083f0e98e7ec6cc13af8e9d8bc01 350 SUPERFAMILY SSF143631 35 345 1.73E-94 T 28-03-2018 IPR003374 ApbE-like domain AM348_RS12845 205a083f0e98e7ec6cc13af8e9d8bc01 350 Pfam PF02424 ApbE family 41 324 1.1E-78 T 28-03-2018 IPR024932 Flavin transferase ApbE GO:0017013 AM348_RS18555 9fdb8807dcec44b3485e7a2e96e8d652 261 Pfam PF01292 Prokaryotic cytochrome b561 69 256 2.4E-26 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS18555 9fdb8807dcec44b3485e7a2e96e8d652 261 SUPERFAMILY SSF81342 63 259 2.2E-25 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS18555 9fdb8807dcec44b3485e7a2e96e8d652 261 Gene3D G3DSA:1.20.950.20 60 261 2.3E-33 T 28-03-2018 AM348_RS23050 90fce0bb58411903e8f980459987f412 183 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 28-03-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 AM348_RS23050 90fce0bb58411903e8f980459987f412 183 Gene3D G3DSA:2.160.10.10 2 183 2.4E-55 T 28-03-2018 AM348_RS23050 90fce0bb58411903e8f980459987f412 183 SUPERFAMILY SSF51161 2 182 2.08E-53 T 28-03-2018 IPR011004 Trimeric LpxA-like AM348_RS23050 90fce0bb58411903e8f980459987f412 183 Pfam PF12464 Maltose acetyltransferase 7 56 2.8E-16 T 28-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM348_RS23050 90fce0bb58411903e8f980459987f412 183 SMART SM01266 5 59 9.2E-19 T 28-03-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 AM348_RS23050 90fce0bb58411903e8f980459987f412 183 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 129 164 2.2E-11 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS23050 90fce0bb58411903e8f980459987f412 183 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 92 109 0.0039 T 28-03-2018 IPR001451 Hexapeptide repeat AM348_RS13795 c14b53f5fa4facb4153df00a37e18bb4 361 Gene3D G3DSA:3.40.50.720 1 201 5.6E-37 T 28-03-2018 AM348_RS13795 c14b53f5fa4facb4153df00a37e18bb4 361 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 330 1.2E-95 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13795 c14b53f5fa4facb4153df00a37e18bb4 361 SUPERFAMILY SSF51735 2 356 1.28E-91 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13795 c14b53f5fa4facb4153df00a37e18bb4 361 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 344 6.8E-154 T 28-03-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM348_RS13795 c14b53f5fa4facb4153df00a37e18bb4 361 Gene3D G3DSA:3.90.25.10 202 360 1.6E-50 T 28-03-2018 AM348_RS17485 823bf8ad79585af36b0609a334d5b9b1 520 Gene3D G3DSA:3.40.190.10 157 294 3.3E-41 T 28-03-2018 AM348_RS17485 823bf8ad79585af36b0609a334d5b9b1 520 PIRSF PIRSF002741 6 519 3.7E-108 T 28-03-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 AM348_RS17485 823bf8ad79585af36b0609a334d5b9b1 520 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 436 3.3E-93 T 28-03-2018 IPR000914 Solute-binding protein family 5 domain AM348_RS17485 823bf8ad79585af36b0609a334d5b9b1 520 Gene3D G3DSA:3.10.105.10 295 490 1.5E-51 T 28-03-2018 AM348_RS17485 823bf8ad79585af36b0609a334d5b9b1 520 Gene3D G3DSA:3.90.76.10 58 156 1.7E-26 T 28-03-2018 AM348_RS17485 823bf8ad79585af36b0609a334d5b9b1 520 SUPERFAMILY SSF53850 34 513 1.46E-133 T 28-03-2018 AM348_RS05970 e5d28e2baeab4c9d871b607dfa39bf5f 143 Pfam PF00581 Rhodanese-like domain 43 133 3.8E-16 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS05970 e5d28e2baeab4c9d871b607dfa39bf5f 143 SUPERFAMILY SSF52821 15 142 3.01E-30 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS05970 e5d28e2baeab4c9d871b607dfa39bf5f 143 Gene3D G3DSA:3.40.250.10 20 143 1.6E-24 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS05970 e5d28e2baeab4c9d871b607dfa39bf5f 143 SMART SM00450 40 138 2.0E-20 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS01285 1d157011a706aaa1d90ff363623e0533 28 Pfam PF08054 Leucine operon leader peptide 1 28 1.4E-13 T 28-03-2018 IPR012570 Leucine operon leader peptide GO:0009098 AM348_RS10225 fe2727fb19924054aa29fe0a13ad0b9a 297 SUPERFAMILY SSF53850 20 277 1.01E-41 T 28-03-2018 AM348_RS10225 fe2727fb19924054aa29fe0a13ad0b9a 297 SMART SM00062 48 279 6.9E-30 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10225 fe2727fb19924054aa29fe0a13ad0b9a 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 278 2.8E-36 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS10225 fe2727fb19924054aa29fe0a13ad0b9a 297 Gene3D G3DSA:3.40.190.10 156 236 6.5E-7 T 28-03-2018 AM348_RS10225 fe2727fb19924054aa29fe0a13ad0b9a 297 Gene3D G3DSA:3.40.190.10 33 155 1.2E-23 T 28-03-2018 AM348_RS16880 c7db86f608e9d541ac5847bb2f06af05 308 SUPERFAMILY SSF103481 44 144 6.93E-14 T 28-03-2018 AM348_RS16880 c7db86f608e9d541ac5847bb2f06af05 308 SUPERFAMILY SSF103481 189 293 3.79E-16 T 28-03-2018 AM348_RS16880 c7db86f608e9d541ac5847bb2f06af05 308 Pfam PF00892 EamA-like transporter family 15 141 6.2E-21 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS16880 c7db86f608e9d541ac5847bb2f06af05 308 Pfam PF00892 EamA-like transporter family 154 289 5.0E-26 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS22495 8dc7c77e30f6093973395881fb41d18b 122 SUPERFAMILY SSF142906 13 119 4.84E-36 T 28-03-2018 AM348_RS22495 8dc7c77e30f6093973395881fb41d18b 122 Pfam PF04237 YjbR 16 105 2.6E-21 T 28-03-2018 IPR007351 Uncharacterised protein YjbR AM348_RS15495 e4d492dba8d0b3da4f70cfbedd52e28f 97 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 82 2.0E-40 T 28-03-2018 IPR027354 YcgL domain AM348_RS15495 e4d492dba8d0b3da4f70cfbedd52e28f 97 Pfam PF05166 YcgL domain 3 75 4.3E-33 T 28-03-2018 IPR027354 YcgL domain AM348_RS15495 e4d492dba8d0b3da4f70cfbedd52e28f 97 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.49 T 28-03-2018 IPR027354 YcgL domain AM348_RS15495 e4d492dba8d0b3da4f70cfbedd52e28f 97 SUPERFAMILY SSF160191 1 92 6.15E-41 T 28-03-2018 AM348_RS20575 312197fa6ef1bb647bbfae71bba3e815 417 Pfam PF04403 Paraquat-inducible protein A 253 408 2.2E-53 T 28-03-2018 IPR007498 Paraquat-inducible protein A AM348_RS20575 312197fa6ef1bb647bbfae71bba3e815 417 Pfam PF04403 Paraquat-inducible protein A 49 200 4.3E-40 T 28-03-2018 IPR007498 Paraquat-inducible protein A AM348_RS20575 312197fa6ef1bb647bbfae71bba3e815 417 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 1 408 7.1E-190 T 28-03-2018 IPR005219 Conserved hypothetical protein CHP00155 AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 28-03-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 SMART SM00487 20 223 1.7E-63 T 28-03-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 441 52.528 T 28-03-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 Gene3D G3DSA:3.40.50.300 6 223 7.3E-62 T 28-03-2018 AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 SUPERFAMILY SSF52540 75 361 6.82E-74 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 Pfam PF00270 DEAD/DEAH box helicase 25 196 9.1E-51 T 28-03-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 SMART SM00490 259 340 7.6E-32 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 Gene3D G3DSA:3.40.50.300 224 444 2.6E-47 T 28-03-2018 AM348_RS21250 1bf283704f3a3ea6f94171d02475782f 448 Pfam PF00271 Helicase conserved C-terminal domain 236 339 2.7E-26 T 28-03-2018 IPR001650 Helicase, C-terminal AM348_RS22945 2cf666e0e726ccdfb5a7dca18681ff1f 319 Hamap MF_01958 Acetyl esterase [aes]. 1 319 71.094 T 28-03-2018 IPR023508 Acetyl esterase GO:0005737|GO:0052689 AM348_RS22945 2cf666e0e726ccdfb5a7dca18681ff1f 319 Pfam PF07859 alpha/beta hydrolase fold 88 295 7.2E-52 T 28-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM348_RS22945 2cf666e0e726ccdfb5a7dca18681ff1f 319 SUPERFAMILY SSF53474 30 317 2.68E-52 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22945 2cf666e0e726ccdfb5a7dca18681ff1f 319 Gene3D G3DSA:3.40.50.1820 1 319 1.3E-50 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS22945 2cf666e0e726ccdfb5a7dca18681ff1f 319 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 159 171 - T 28-03-2018 IPR033140 Lipase, GDXG, putative serine active site AM348_RS08760 17ddd0071395af9c77548b2a67e8395d 222 Gene3D G3DSA:3.40.30.10 28 222 4.4E-29 T 28-03-2018 AM348_RS08760 17ddd0071395af9c77548b2a67e8395d 222 Hamap MF_00932 Thiol:disulfide interchange protein DsbL [dsbL]. 1 222 61.975 T 28-03-2018 IPR028588 Thiol:disulfide interchange protein DsbL AM348_RS08760 17ddd0071395af9c77548b2a67e8395d 222 PIRSF PIRSF001488 1 222 4.5E-26 T 28-03-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AM348_RS08760 17ddd0071395af9c77548b2a67e8395d 222 Pfam PF01323 DSBA-like thioredoxin domain 48 201 2.3E-10 T 28-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM348_RS08760 17ddd0071395af9c77548b2a67e8395d 222 SUPERFAMILY SSF52833 28 219 9.12E-26 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS20120 cf762be76d8303d2d22cd503a5be8ac5 245 SMART SM00481 4 78 1.5E-19 T 28-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AM348_RS20120 cf762be76d8303d2d22cd503a5be8ac5 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 50.875 T 28-03-2018 IPR023710 Probable phosphatase YcdX GO:0008270 AM348_RS20120 cf762be76d8303d2d22cd503a5be8ac5 245 Pfam PF02811 PHP domain 5 81 7.9E-8 T 28-03-2018 IPR004013 PHP domain GO:0003824 AM348_RS20120 cf762be76d8303d2d22cd503a5be8ac5 245 SUPERFAMILY SSF89550 3 241 5.89E-63 T 28-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM348_RS20120 cf762be76d8303d2d22cd503a5be8ac5 245 Gene3D G3DSA:3.20.20.140 6 232 6.9E-38 T 28-03-2018 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.8E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.8E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.8E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 SUPERFAMILY SSF53850 89 296 3.2E-34 T 28-03-2018 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.4E-21 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 Gene3D G3DSA:1.10.10.10 1 83 4.3E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 SUPERFAMILY SSF46785 2 111 5.75E-23 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 Gene3D G3DSA:3.40.190.10 87 174 5.9E-19 T 28-03-2018 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 Gene3D G3DSA:3.40.190.10 175 266 8.7E-12 T 28-03-2018 AM348_RS05085 fc50704deb9f1e5d1efdd5b3ceabc0e9 300 Pfam PF03466 LysR substrate binding domain 89 296 7.9E-39 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS15870 26503be57938cac6eacf57ec09223b71 463 Gene3D G3DSA:1.20.1250.20 21 237 9.7E-15 T 28-03-2018 AM348_RS15870 26503be57938cac6eacf57ec09223b71 463 Gene3D G3DSA:1.20.1250.20 244 463 7.9E-22 T 28-03-2018 AM348_RS15870 26503be57938cac6eacf57ec09223b71 463 Pfam PF07690 Major Facilitator Superfamily 45 422 7.4E-16 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS15870 26503be57938cac6eacf57ec09223b71 463 SUPERFAMILY SSF103473 20 460 8.89E-37 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS15870 26503be57938cac6eacf57ec09223b71 463 TIGRFAM TIGR00886 2A0108: nitrite transporter 36 418 4.2E-115 T 28-03-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 764 2.2E-140 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 SUPERFAMILY SSF56935 38 764 6.41E-137 T 28-03-2018 AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 747 764 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 167 4.6E-28 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 Pfam PF00593 TonB dependent receptor 280 761 3.8E-58 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 Gene3D G3DSA:2.170.130.10 45 180 1.5E-34 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 28-03-2018 IPR010916 TonB box, conserved site AM348_RS22405 b400e5b1a11e545e50a93dede9455adb 764 Gene3D G3DSA:2.40.170.20 181 764 8.6E-84 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS13965 81d72196dcdecedebf528f538b274a75 288 PIRSF PIRSF033887 1 277 1.6E-69 T 28-03-2018 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00040+2.7.1.17|KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 AM348_RS13965 81d72196dcdecedebf528f538b274a75 288 Pfam PF00288 GHMP kinases N terminal domain 72 120 8.2E-9 T 28-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM348_RS13965 81d72196dcdecedebf528f538b274a75 288 SUPERFAMILY SSF54211 3 148 2.58E-19 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS13965 81d72196dcdecedebf528f538b274a75 288 Gene3D G3DSA:3.30.230.10 21 142 1.4E-13 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 Gene3D G3DSA:1.20.1510.10 17 213 6.9E-63 T 28-03-2018 AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 Hamap MF_00552 Zinc transporter ZitB [zitB]. 3 312 64.685 T 28-03-2018 IPR023500 Zinc transporter ZitB GO:0005385|GO:0006829|GO:0016020 AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 SUPERFAMILY SSF161111 16 214 1.96E-60 T 28-03-2018 AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 18 293 8.6E-97 T 28-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 SUPERFAMILY SSF160240 231 293 7.72E-9 T 28-03-2018 AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 Pfam PF01545 Cation efflux family 22 213 1.2E-50 T 28-03-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 AM348_RS21495 e55c25347ab71785e168032a3a4ca8b2 313 Gene3D G3DSA:3.30.70.1350 216 293 7.5E-11 T 28-03-2018 IPR027470 Cation efflux protein, cytoplasmic domain AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 435 537 4.6E-10 T 28-03-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 462 481 4.1E-10 T 28-03-2018 AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 492 510 4.1E-10 T 28-03-2018 AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 432 451 4.1E-10 T 28-03-2018 AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 SUPERFAMILY SSF54211 347 542 2.58E-33 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 Gene3D G3DSA:3.30.230.10 326 568 1.4E-29 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS20550 8fe331545e1cb2fb6bff260a239c791c 586 Pfam PF13654 AAA domain 141 287 2.7E-20 T 28-03-2018 AM348_RS16015 21af541678c504b45560f8ad970b8a35 397 Gene3D G3DSA:1.10.150.130 93 212 2.7E-9 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS16015 21af541678c504b45560f8ad970b8a35 397 Pfam PF00589 Phage integrase family 203 369 5.5E-17 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS16015 21af541678c504b45560f8ad970b8a35 397 Gene3D G3DSA:1.10.443.10 213 372 7.8E-21 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS16015 21af541678c504b45560f8ad970b8a35 397 SUPERFAMILY SSF56349 99 379 1.0E-42 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS16015 21af541678c504b45560f8ad970b8a35 397 Pfam PF13356 Arm DNA-binding domain 2 87 1.7E-14 T 28-03-2018 IPR025166 Integrase, DNA-binding domain AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 SUPERFAMILY SSF51064 140 195 5.1E-16 T 28-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 SUPERFAMILY SSF58014 41 138 1.83E-26 T 28-03-2018 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 Hamap MF_01151 Protein GrpE [grpE]. 3 194 20.046 T 28-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 Gene3D G3DSA:3.90.20.20 34 137 7.8E-30 T 28-03-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 Pfam PF01025 GrpE 35 194 1.3E-45 T 28-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 PRINTS PR00773 GrpE protein signature 146 161 1.0E-25 T 28-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 PRINTS PR00773 GrpE protein signature 173 192 1.0E-25 T 28-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 PRINTS PR00773 GrpE protein signature 91 106 1.0E-25 T 28-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 PRINTS PR00773 GrpE protein signature 63 79 1.0E-25 T 28-03-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 AM348_RS11050 ec3f4601da327569496fdfaa3114166a 197 Gene3D G3DSA:2.30.22.10 138 194 3.2E-18 T 28-03-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 Gene3D G3DSA:3.40.190.10 193 278 8.0E-4 T 28-03-2018 AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 SUPERFAMILY SSF53850 103 294 7.96E-19 T 28-03-2018 AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 73 5.6E-13 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 SUPERFAMILY SSF46785 14 93 1.59E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 Gene3D G3DSA:3.40.190.10 103 192 1.8E-5 T 28-03-2018 AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 Gene3D G3DSA:1.10.10.10 3 95 1.3E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21035 37f340bc1177771ee903ceae0da880ec 308 Pfam PF03466 LysR substrate binding domain 104 289 4.7E-10 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 SUPERFAMILY SSF53067 255 403 3.63E-69 T 28-03-2018 AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 SUPERFAMILY SSF53067 3 93 3.63E-69 T 28-03-2018 AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 Pfam PF08841 Diol dehydratase reactivase ATPase-like domain 275 602 1.7E-163 T 28-03-2018 IPR030994 Diol dehydratase reactivase ATPase-like domain AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 PIRSF PIRSF011502 1 608 0.0 T 28-03-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 SUPERFAMILY SSF53067 407 600 6.34E-34 T 28-03-2018 AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 TIGRFAM TIGR04491 reactive_PduG: diol dehydratase reactivase alpha subunit 3 601 8.6E-287 T 28-03-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 Gene3D G3DSA:3.50.30.70 108 247 8.6E-68 T 28-03-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 Gene3D G3DSA:3.30.420.40 280 411 0.0013 T 28-03-2018 AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 Gene3D G3DSA:3.30.420.40 511 610 2.6E-18 T 28-03-2018 AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 Gene3D G3DSA:3.30.420.40 1 107 5.3E-15 T 28-03-2018 AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 SUPERFAMILY SSF82317 93 254 3.79E-68 T 28-03-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain AM348_RS14040 3ee0df688d19b39d3f08897978b14e74 610 Gene3D G3DSA:2.40.50.140 466 509 5.1E-25 T 28-03-2018 AM348_RS11510 b6a946e2ae406916ac2a0d76c3bf27cd 128 SUPERFAMILY SSF82649 1 125 2.22E-49 T 28-03-2018 AM348_RS11510 b6a946e2ae406916ac2a0d76c3bf27cd 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 2.0E-71 T 28-03-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AM348_RS11510 b6a946e2ae406916ac2a0d76c3bf27cd 128 Pfam PF01592 NifU-like N terminal domain 2 126 2.2E-57 T 28-03-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 AM348_RS11510 b6a946e2ae406916ac2a0d76c3bf27cd 128 Gene3D G3DSA:3.90.1010.10 1 128 4.0E-53 T 28-03-2018 AM348_RS00930 6f259b18c0f59fc39f57713df2eec88e 197 SUPERFAMILY SSF49401 28 197 1.19E-13 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00930 6f259b18c0f59fc39f57713df2eec88e 197 Pfam PF00419 Fimbrial protein 70 197 2.4E-10 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00930 6f259b18c0f59fc39f57713df2eec88e 197 Gene3D G3DSA:2.60.40.1090 27 197 4.2E-21 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS23440 1425b92e9f4f155f3a77ff60732cc624 400 Pfam PF00149 Calcineurin-like phosphoesterase 1 225 1.2E-16 T 28-03-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 AM348_RS23440 1425b92e9f4f155f3a77ff60732cc624 400 Gene3D G3DSA:3.60.21.10 1 66 1.3E-17 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS23440 1425b92e9f4f155f3a77ff60732cc624 400 Gene3D G3DSA:3.60.21.10 67 277 3.2E-22 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS23440 1425b92e9f4f155f3a77ff60732cc624 400 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 276 373 5.5E-24 T 28-03-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain AM348_RS23440 1425b92e9f4f155f3a77ff60732cc624 400 SUPERFAMILY SSF56300 1 335 9.09E-60 T 28-03-2018 IPR029052 Metallo-dependent phosphatase-like AM348_RS23440 1425b92e9f4f155f3a77ff60732cc624 400 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 253 5.2E-90 T 28-03-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 AM348_RS14130 0ec1748fb4c3f5c39b45ab0e1d56738e 264 PIRSF PIRSF033579 1 264 4.1E-107 T 28-03-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 AM348_RS14130 0ec1748fb4c3f5c39b45ab0e1d56738e 264 Gene3D G3DSA:3.40.50.1400 1 124 2.6E-12 T 28-03-2018 AM348_RS14130 0ec1748fb4c3f5c39b45ab0e1d56738e 264 SUPERFAMILY SSF53800 2 256 8.76E-80 T 28-03-2018 AM348_RS14130 0ec1748fb4c3f5c39b45ab0e1d56738e 264 Pfam PF06180 Cobalt chelatase (CbiK) 3 256 1.2E-103 T 28-03-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 AM348_RS14130 0ec1748fb4c3f5c39b45ab0e1d56738e 264 Gene3D G3DSA:3.40.50.1400 125 236 1.3E-21 T 28-03-2018 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 PIRSF PIRSF002144 1 92 3.5E-31 T 28-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 Pfam PF00203 Ribosomal protein S19 3 83 2.2E-35 T 28-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.6E-45 T 28-03-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 SUPERFAMILY SSF54570 3 84 6.02E-35 T 28-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 28-03-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.439 T 28-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 Gene3D G3DSA:3.30.860.10 1 92 6.8E-40 T 28-03-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.1E-24 T 28-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.1E-24 T 28-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07360 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.1E-24 T 28-03-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 SUPERFAMILY SSF56214 102 205 1.06E-13 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 103 199 1.3E-13 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 PRINTS PR01399 Enterobactin synthetase component D signature 146 162 1.1E-19 T 28-03-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 PRINTS PR01399 Enterobactin synthetase component D signature 44 64 1.1E-19 T 28-03-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 PRINTS PR01399 Enterobactin synthetase component D signature 73 91 1.1E-19 T 28-03-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 Gene3D G3DSA:3.90.470.20 114 202 1.8E-9 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS22410 8e8d156bb8290c50c033279fa0c2001e 207 Gene3D G3DSA:3.90.470.20 32 113 6.7E-15 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS01820 b3269690ae262ee41c0d2eb2980bca12 59 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 7 54 18.67 T 28-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AM348_RS01820 b3269690ae262ee41c0d2eb2980bca12 59 PIRSF PIRSF036466 7 59 1.3E-20 T 28-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AM348_RS01820 b3269690ae262ee41c0d2eb2980bca12 59 Pfam PF07043 Protein of unknown function (DUF1328) 12 50 2.7E-13 T 28-03-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 28-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 2.6E-175 T 28-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 SMART SM00937 63 178 2.7E-71 T 28-03-2018 IPR005139 Peptide chain release factor GO:0006415 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 SUPERFAMILY SSF75620 12 353 1.09E-136 T 28-03-2018 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 Gene3D G3DSA:3.30.160.20 209 291 1.8E-32 T 28-03-2018 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.912 T 28-03-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 Gene3D G3DSA:1.20.58.410 3 101 2.8E-20 T 28-03-2018 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 Pfam PF03462 PCRF domain 13 203 6.8E-76 T 28-03-2018 IPR005139 Peptide chain release factor GO:0006415 AM348_RS15755 945eb029883703426ccd1b60d318c27e 360 Pfam PF00472 RF-1 domain 216 321 1.4E-40 T 28-03-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 AM348_RS20555 f547a9a2412fa675bb0fab77e0899516 172 Pfam PF07977 FabA-like domain 29 158 8.7E-54 T 28-03-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS20555 f547a9a2412fa675bb0fab77e0899516 172 Gene3D G3DSA:3.10.129.10 1 172 3.3E-50 T 28-03-2018 AM348_RS20555 f547a9a2412fa675bb0fab77e0899516 172 SUPERFAMILY SSF54637 3 169 1.34E-55 T 28-03-2018 IPR029069 HotDog domain AM348_RS20555 f547a9a2412fa675bb0fab77e0899516 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 172 2.0E-97 T 28-03-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS20555 f547a9a2412fa675bb0fab77e0899516 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.606 T 28-03-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 AM348_RS22420 e6ecf0fbe669df78f2089244ed7c556e 276 SUPERFAMILY SSF52518 7 273 5.42E-74 T 28-03-2018 IPR029061 Thiamin diphosphate-binding fold AM348_RS22420 e6ecf0fbe669df78f2089244ed7c556e 276 Gene3D G3DSA:3.40.50.970 3 276 2.6E-61 T 28-03-2018 AM348_RS22420 e6ecf0fbe669df78f2089244ed7c556e 276 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 28 268 9.5E-39 T 28-03-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 28-03-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 120 23.193 T 28-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 119 1.2E-45 T 28-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 Pfam PF02033 Ribosome-binding factor A 7 112 4.1E-33 T 28-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 SUPERFAMILY SSF89919 2 107 1.44E-35 T 28-03-2018 IPR023799 Ribosome-binding factor A domain AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 100 7.0E-48 T 28-03-2018 IPR000238 Ribosome-binding factor A GO:0006364 AM348_RS08130 9981922a55ad93ce7e6ba8e075247273 134 Gene3D G3DSA:3.30.300.20 1 106 1.8E-35 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS00950 fe25a91708a6a1ce5eee9b0329913903 206 SUPERFAMILY SSF49401 35 206 3.03E-10 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00950 fe25a91708a6a1ce5eee9b0329913903 206 Gene3D G3DSA:2.60.40.1090 33 206 3.4E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS09530 2099b5daf46b7f673405a7f249f01f84 184 PIRSF PIRSF018427 1 181 4.3E-54 T 28-03-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 AM348_RS09530 2099b5daf46b7f673405a7f249f01f84 184 Gene3D G3DSA:3.90.79.10 31 182 7.1E-27 T 28-03-2018 AM348_RS09530 2099b5daf46b7f673405a7f249f01f84 184 Pfam PF00293 NUDIX domain 31 161 5.0E-17 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS09530 2099b5daf46b7f673405a7f249f01f84 184 SUPERFAMILY SSF55811 4 168 2.44E-47 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS09530 2099b5daf46b7f673405a7f249f01f84 184 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 6 165 2.1E-45 T 28-03-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 AM348_RS09530 2099b5daf46b7f673405a7f249f01f84 184 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 4 177 32.687 T 28-03-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 SUPERFAMILY SSF52540 326 575 9.63E-46 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 Pfam PF02374 Anion-transporting ATPase 481 581 6.7E-7 T 28-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 Pfam PF02374 Anion-transporting ATPase 329 476 1.4E-31 T 28-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 Pfam PF02374 Anion-transporting ATPase 10 292 2.0E-89 T 28-03-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 SUPERFAMILY SSF52540 7 289 3.44E-52 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 PIRSF PIRSF001327 1 583 5.6E-266 T 28-03-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 Gene3D G3DSA:3.40.50.300 2 294 6.5E-64 T 28-03-2018 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 12 294 9.2E-98 T 28-03-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 Gene3D G3DSA:3.40.50.300 311 582 1.7E-48 T 28-03-2018 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 7 570 4.6E-287 T 28-03-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 SMART SM00382 326 518 0.24 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS14245 f17f7fd239a16d2e43c5c9a46981e7e5 583 SMART SM00382 7 226 6.0 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 191 0.0013 T 28-03-2018 AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 Gene3D G3DSA:3.40.50.720 42 261 1.0E-67 T 28-03-2018 AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 Gene3D G3DSA:3.40.50.720 1 41 2.9E-10 T 28-03-2018 AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 SUPERFAMILY SSF51735 6 255 6.91E-86 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.6E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.8E-45 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.8E-45 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.8E-45 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.8E-45 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.8E-45 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.8E-45 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS11950 77b8d8dd63a387e0e0076dd5693d8eca 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 254 4.2E-71 T 28-03-2018 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 31.477 T 28-03-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 SUPERFAMILY SSF143800 1 66 2.67E-27 T 28-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 6.9E-35 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 Pfam PF01197 Ribosomal protein L31 1 64 3.5E-30 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.3E-22 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.3E-22 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS04260 d83cbec3bfd7325206ed38a8ed6d4b17 70 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.3E-22 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 Gene3D G3DSA:3.30.70.20 190 226 0.0024 T 28-03-2018 AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 SUPERFAMILY SSF54862 103 143 2.93E-18 T 28-03-2018 AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 SUPERFAMILY SSF54862 191 280 2.93E-18 T 28-03-2018 AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 Pfam PF13237 4Fe-4S dicluster domain 222 270 2.6E-6 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 Pfam PF12801 4Fe-4S binding domain 179 210 0.0011 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 Pfam PF12801 4Fe-4S binding domain 83 126 1.2E-11 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 24 278 3.0E-114 T 28-03-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family GO:0005506 AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 226 237 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS12905 2d8cc7b0919b69f4d54f35d5df9ebdda 287 Gene3D G3DSA:3.30.70.20 227 286 2.0E-9 T 28-03-2018 AM348_RS16285 737187e8c658c4ef7ecec5d326b2bcf5 1110 Pfam PF06120 Tail length tape measure protein 396 552 9.4E-12 T 28-03-2018 IPR009302 Tail length tape measure AM348_RS16285 737187e8c658c4ef7ecec5d326b2bcf5 1110 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 143 217 1.0E-22 T 28-03-2018 IPR013491 Caudovirus, tape measure, N-terminal AM348_RS16285 737187e8c658c4ef7ecec5d326b2bcf5 1110 Gene3D G3DSA:1.10.287.620 430 645 4.3E-4 T 28-03-2018 AM348_RS15415 d91f8263e008cd19aa72b2250821a47c 59 Gene3D G3DSA:1.10.10.60 7 55 6.9E-4 T 28-03-2018 AM348_RS15415 d91f8263e008cd19aa72b2250821a47c 59 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 48 1.0E-18 T 28-03-2018 IPR005371 Uncharacterised protein family UPF0181 AM348_RS15415 d91f8263e008cd19aa72b2250821a47c 59 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 49 3.4E-28 T 28-03-2018 IPR005371 Uncharacterised protein family UPF0181 AM348_RS15415 d91f8263e008cd19aa72b2250821a47c 59 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 58 20.465 T 28-03-2018 IPR005371 Uncharacterised protein family UPF0181 AM348_RS23255 d1908c3a9871b31552e9436911c8fc56 454 SUPERFAMILY SSF103473 12 391 3.4E-62 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS23255 d1908c3a9871b31552e9436911c8fc56 454 Pfam PF07690 Major Facilitator Superfamily 20 354 1.5E-39 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS23255 d1908c3a9871b31552e9436911c8fc56 454 Gene3D G3DSA:1.20.1250.20 199 392 1.5E-16 T 28-03-2018 AM348_RS23255 d1908c3a9871b31552e9436911c8fc56 454 Gene3D G3DSA:1.20.1250.20 9 198 1.1E-31 T 28-03-2018 AM348_RS19155 e191364d145e1ca3f4157bf3ba593915 91 Pfam PF07023 Protein of unknown function (DUF1315) 4 79 4.0E-26 T 28-03-2018 IPR009749 Protein of unknown function DUF1315 AM348_RS17495 c0f66b679e1c4b0bd5c4b1fa4f2cada8 288 SUPERFAMILY SSF46689 6 76 5.73E-13 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS17495 c0f66b679e1c4b0bd5c4b1fa4f2cada8 288 Gene3D G3DSA:3.40.50.10490 103 287 1.4E-5 T 28-03-2018 AM348_RS17495 c0f66b679e1c4b0bd5c4b1fa4f2cada8 288 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 74 6.6E-8 T 28-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM348_RS17495 c0f66b679e1c4b0bd5c4b1fa4f2cada8 288 Gene3D G3DSA:1.10.10.10 1 77 6.7E-13 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS17495 c0f66b679e1c4b0bd5c4b1fa4f2cada8 288 SUPERFAMILY SSF53697 103 280 8.53E-6 T 28-03-2018 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 Gene3D G3DSA:3.40.50.1860 1 117 9.9E-30 T 28-03-2018 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 Gene3D G3DSA:3.40.50.1860 118 215 1.6E-21 T 28-03-2018 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 SUPERFAMILY SSF53681 1 114 1.47E-36 T 28-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 SUPERFAMILY SSF53681 119 229 8.5E-30 T 28-03-2018 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 231 3.3E-63 T 28-03-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 6.0E-56 T 28-03-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS09680 c89204811a9c29f78a15fcae9e434842 235 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 79 88 - T 28-03-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 28-03-2018 IPR023187 Transcriptional regulator MarR-type, conserved site AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 SUPERFAMILY SSF46785 24 166 6.08E-28 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 Pfam PF01047 MarR family 53 112 1.4E-16 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 SMART SM00347 46 148 4.7E-32 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 1.2E-24 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 1.2E-24 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 1.2E-24 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 1.2E-24 T 28-03-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 AM348_RS10575 056d8017cd7dd7b158e400ed91cb29f9 176 Gene3D G3DSA:1.10.10.10 21 169 1.7E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05235 ecf85e86547458796d11c227c158d7f7 149 Pfam PF00258 Flavodoxin 7 138 8.3E-23 T 28-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM348_RS05235 ecf85e86547458796d11c227c158d7f7 149 SUPERFAMILY SSF52218 1 147 1.74E-37 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS05235 ecf85e86547458796d11c227c158d7f7 149 Gene3D G3DSA:3.40.50.360 1 149 9.3E-27 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Gene3D G3DSA:3.10.20.30 383 458 6.1E-23 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 SUPERFAMILY SSF81301 180 393 3.6E-62 T 28-03-2018 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 SUPERFAMILY SSF109604 3 190 1.18E-75 T 28-03-2018 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Pfam PF04607 Region found in RelA / SpoT proteins 235 344 2.2E-35 T 28-03-2018 IPR007685 RelA/SpoT GO:0015969 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Gene3D G3DSA:3.30.460.10 188 325 4.0E-40 T 28-03-2018 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 SMART SM00954 235 345 7.1E-63 T 28-03-2018 IPR007685 RelA/SpoT GO:0015969 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Gene3D G3DSA:3.30.70.260 625 703 9.5E-9 T 28-03-2018 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 701 2.7E-291 T 28-03-2018 IPR004811 RelA/SpoT family GO:0015969 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 SMART SM00471 41 153 1.2E-11 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 SUPERFAMILY SSF55021 629 701 3.89E-5 T 28-03-2018 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 SUPERFAMILY SSF81271 376 448 8.07E-21 T 28-03-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Pfam PF13328 HD domain 26 175 3.0E-53 T 28-03-2018 IPR003607 HD/PDEase domain AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Pfam PF02824 TGS domain 389 448 1.1E-20 T 28-03-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 AM348_RS05795 a6d2225beff2603221dc9532cb5db5ff 704 Pfam PF13291 ACT domain 624 701 7.1E-15 T 28-03-2018 IPR002912 ACT domain AM348_RS17245 70756952f8ccf6fb3328b6d16f4ecf2a 310 SUPERFAMILY SSF53850 65 294 5.07E-40 T 28-03-2018 AM348_RS17245 70756952f8ccf6fb3328b6d16f4ecf2a 310 Gene3D G3DSA:3.40.190.10 58 160 3.9E-19 T 28-03-2018 AM348_RS17245 70756952f8ccf6fb3328b6d16f4ecf2a 310 Gene3D G3DSA:3.40.190.10 161 247 3.9E-13 T 28-03-2018 AM348_RS17245 70756952f8ccf6fb3328b6d16f4ecf2a 310 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 72 292 1.2E-37 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS17245 70756952f8ccf6fb3328b6d16f4ecf2a 310 SMART SM00062 62 295 1.5E-18 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS07660 f59e6580939286ead80df55fcb59837c 293 SUPERFAMILY SSF53335 42 291 4.26E-44 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS07660 f59e6580939286ead80df55fcb59837c 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 1.5E-124 T 28-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AM348_RS07660 f59e6580939286ead80df55fcb59837c 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 33.589 T 28-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AM348_RS07660 f59e6580939286ead80df55fcb59837c 293 Gene3D G3DSA:3.40.50.150 99 292 1.9E-32 T 28-03-2018 AM348_RS07660 f59e6580939286ead80df55fcb59837c 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 7.5E-106 T 28-03-2018 AM348_RS07660 f59e6580939286ead80df55fcb59837c 293 PIRSF PIRSF000401 1 293 9.5E-95 T 28-03-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 AM348_RS17215 7ba583cabf8bcac811113490011bdde9 73 SUPERFAMILY SSF50182 22 71 2.07E-17 T 28-03-2018 IPR010920 LSM domain AM348_RS17215 7ba583cabf8bcac811113490011bdde9 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 1.6E-22 T 28-03-2018 IPR010305 Protein of unknown function DUF903 AM348_RS17215 7ba583cabf8bcac811113490011bdde9 73 Gene3D G3DSA:2.30.30.100 21 72 6.8E-22 T 28-03-2018 AM348_RS19220 c76dfb15a2fe2dc275b5922c9eeec6ea 148 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 3 148 18.59 T 28-03-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AM348_RS19220 c76dfb15a2fe2dc275b5922c9eeec6ea 148 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 1 130 6.0E-41 T 28-03-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AM348_RS19220 c76dfb15a2fe2dc275b5922c9eeec6ea 148 Pfam PF04284 Protein of unknown function (DUF441) 7 145 1.1E-45 T 28-03-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame AM348_RS10055 7471d4a5c5993ae52539293a946936ac 120 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 120 3.0E-33 T 28-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM348_RS10055 7471d4a5c5993ae52539293a946936ac 120 SUPERFAMILY SSF55620 3 119 3.06E-40 T 28-03-2018 AM348_RS10055 7471d4a5c5993ae52539293a946936ac 120 TIGRFAM TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein 3 120 1.8E-38 T 28-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM348_RS10055 7471d4a5c5993ae52539293a946936ac 120 Gene3D G3DSA:3.30.479.10 1 120 5.2E-39 T 28-03-2018 AM348_RS10055 7471d4a5c5993ae52539293a946936ac 120 PIRSF PIRSF006113 1 120 5.0E-56 T 28-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM348_RS10055 7471d4a5c5993ae52539293a946936ac 120 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 3.2E-33 T 28-03-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 AM348_RS14905 4084cbf81e9a33f0482dc999893900a5 79 TIGRFAM TIGR03853 matur_matur: putative metal-binding protein 3 79 4.8E-35 T 28-03-2018 IPR019620 Putative metal-binding protein AM348_RS14905 4084cbf81e9a33f0482dc999893900a5 79 Pfam PF10678 Protein of unknown function (DUF2492) 2 78 4.1E-35 T 28-03-2018 IPR019620 Putative metal-binding protein AM348_RS19985 bcf1934b2ed0e848a3c0d24c13616480 81 Gene3D G3DSA:3.30.910.10 1 78 6.7E-34 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS19985 bcf1934b2ed0e848a3c0d24c13616480 81 SUPERFAMILY SSF54857 1 80 3.14E-29 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS19985 bcf1934b2ed0e848a3c0d24c13616480 81 Pfam PF06183 DinI-like family 14 78 2.4E-29 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 347 5.0E-113 T 28-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 Gene3D G3DSA:3.40.50.2000 1 179 2.6E-45 T 28-03-2018 AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 35.011 T 28-03-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 Gene3D G3DSA:3.40.50.2000 180 347 1.6E-30 T 28-03-2018 AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 344 5.8E-36 T 28-03-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 7.2E-49 T 28-03-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 AM348_RS01210 3f7fcb4b5ad15d71357661d02b1307a9 355 SUPERFAMILY SSF53756 6 353 2.96E-130 T 28-03-2018 AM348_RS15810 0295e27b42c44d3d8afe88369c7049af 81 SUPERFAMILY SSF141099 1 80 8.24E-25 T 28-03-2018 IPR015073 Atu1913-like AM348_RS15810 0295e27b42c44d3d8afe88369c7049af 81 Gene3D G3DSA:4.10.1210.10 1 81 4.9E-20 T 28-03-2018 IPR015073 Atu1913-like AM348_RS15810 0295e27b42c44d3d8afe88369c7049af 81 Pfam PF08980 Domain of unknown function (DUF1883) 12 78 5.4E-7 T 28-03-2018 IPR015073 Atu1913-like AM348_RS00485 dd5b14b8c67a8a2f975d46622f681b73 180 Pfam PF00419 Fimbrial protein 30 180 8.4E-13 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00485 dd5b14b8c67a8a2f975d46622f681b73 180 Gene3D G3DSA:2.60.40.1090 27 180 1.8E-27 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00485 dd5b14b8c67a8a2f975d46622f681b73 180 SUPERFAMILY SSF49401 29 180 1.29E-31 T 28-03-2018 IPR008966 Adhesion domain AM348_RS20505 712976817fb37ba75b0be014947d5245 220 Hamap MF_00789 UPF0319 protein YccT [yccT]. 3 216 25.835 T 28-03-2018 IPR018635 Uncharacterised protein family UPF0319 AM348_RS20505 712976817fb37ba75b0be014947d5245 220 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 213 4.2E-45 T 28-03-2018 IPR018635 Uncharacterised protein family UPF0319 AM348_RS17745 9a9e8b3a757da5c96ae88f44d54c200b 395 Gene3D G3DSA:1.20.1250.20 196 387 1.5E-11 T 28-03-2018 AM348_RS17745 9a9e8b3a757da5c96ae88f44d54c200b 395 Pfam PF07690 Major Facilitator Superfamily 13 341 1.6E-28 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17745 9a9e8b3a757da5c96ae88f44d54c200b 395 SUPERFAMILY SSF103473 6 383 2.22E-44 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17745 9a9e8b3a757da5c96ae88f44d54c200b 395 Gene3D G3DSA:1.20.1250.20 4 195 2.5E-26 T 28-03-2018 AM348_RS13830 76149dd100bb4fbdb845fdfccb480c35 418 Pfam PF01943 Polysaccharide biosynthesis protein 10 263 1.0E-6 T 28-03-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 AM348_RS08215 53f39de66419bca77654d0647628d315 131 SUPERFAMILY SSF52980 17 125 6.54E-23 T 28-03-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 AM348_RS08215 53f39de66419bca77654d0647628d315 131 Gene3D G3DSA:3.40.1350.10 22 131 5.0E-35 T 28-03-2018 AM348_RS08215 53f39de66419bca77654d0647628d315 131 Pfam PF02021 Uncharacterised protein family UPF0102 24 114 1.7E-24 T 28-03-2018 IPR003509 Uncharacterised protein family UPF0102 AM348_RS08215 53f39de66419bca77654d0647628d315 131 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 16 130 3.2E-55 T 28-03-2018 IPR003509 Uncharacterised protein family UPF0102 AM348_RS08215 53f39de66419bca77654d0647628d315 131 Hamap MF_00048 UPF0102 protein YraN [yraN]. 16 128 23.663 T 28-03-2018 IPR003509 Uncharacterised protein family UPF0102 AM348_RS19595 18f43c5efd124a2e269535a3f89c3324 165 Gene3D G3DSA:3.30.300.130 10 106 8.8E-17 T 28-03-2018 IPR034904 Fe-S cluster assembly domain AM348_RS19595 18f43c5efd124a2e269535a3f89c3324 165 Pfam PF01883 Iron-sulfur cluster assembly protein 15 72 3.0E-6 T 28-03-2018 IPR002744 MIP18 family-like AM348_RS19595 18f43c5efd124a2e269535a3f89c3324 165 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 22 165 1.5E-66 T 28-03-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit AM348_RS19595 18f43c5efd124a2e269535a3f89c3324 165 SUPERFAMILY SSF117916 13 105 9.81E-21 T 28-03-2018 IPR034904 Fe-S cluster assembly domain AM348_RS12970 4eaa42975358f25bbf9c6de6b2a04309 586 Pfam PF00884 Sulfatase 260 500 1.5E-29 T 28-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM348_RS12970 4eaa42975358f25bbf9c6de6b2a04309 586 SUPERFAMILY SSF53649 257 579 4.32E-55 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS12970 4eaa42975358f25bbf9c6de6b2a04309 586 PIRSF PIRSF004950 6 586 6.2E-226 T 28-03-2018 IPR012159 Inner membrane protein YejM AM348_RS12970 4eaa42975358f25bbf9c6de6b2a04309 586 Pfam PF11893 Domain of unknown function (DUF3413) 6 252 2.8E-105 T 28-03-2018 IPR024588 Inner membrane protein YejM, N-terminal AM348_RS12970 4eaa42975358f25bbf9c6de6b2a04309 586 Gene3D G3DSA:3.40.720.10 258 551 9.1E-33 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS21285 0008b2a71faa8cb68ad7f118a763764a 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 33 244 1.6E-15 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS21285 0008b2a71faa8cb68ad7f118a763764a 253 Gene3D G3DSA:3.60.10.10 8 253 5.2E-33 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS21285 0008b2a71faa8cb68ad7f118a763764a 253 SUPERFAMILY SSF56219 9 251 1.44E-51 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS17325 44b33a7d13773d429f173f9bbdc5a3e5 231 Gene3D G3DSA:1.10.3480.10 20 202 1.1E-31 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS17325 44b33a7d13773d429f173f9bbdc5a3e5 231 SUPERFAMILY SSF89155 2 156 1.26E-28 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS17325 44b33a7d13773d429f173f9bbdc5a3e5 231 Pfam PF02613 Nitrate reductase delta subunit 41 151 6.3E-13 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS17325 44b33a7d13773d429f173f9bbdc5a3e5 231 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 9 154 7.1E-35 T 28-03-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 AM348_RS19140 6ddfe172f3e89d5d9462a69f178d1dd7 212 Pfam PF00857 Isochorismatase family 4 205 1.8E-32 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS19140 6ddfe172f3e89d5d9462a69f178d1dd7 212 SUPERFAMILY SSF52499 3 209 1.44E-50 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS19140 6ddfe172f3e89d5d9462a69f178d1dd7 212 Gene3D G3DSA:3.40.50.850 1 212 3.4E-59 T 28-03-2018 AM348_RS22940 9ddd68da0ab2a70fa6375b51f7a7af2f 434 Gene3D G3DSA:3.40.1190.20 32 431 2.7E-42 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS22940 9ddd68da0ab2a70fa6375b51f7a7af2f 434 Pfam PF00294 pfkB family carbohydrate kinase 71 301 5.7E-11 T 28-03-2018 IPR011611 Carbohydrate kinase PfkB AM348_RS22940 9ddd68da0ab2a70fa6375b51f7a7af2f 434 SUPERFAMILY SSF53613 36 305 1.14E-45 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS22940 9ddd68da0ab2a70fa6375b51f7a7af2f 434 SUPERFAMILY SSF53613 338 416 1.14E-45 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS22940 9ddd68da0ab2a70fa6375b51f7a7af2f 434 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 352 365 - T 28-03-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 AM348_RS10560 ca581d20a3e883260a6680c1b5940abc 456 Pfam PF16966 Porin-like glycoporin RafY 92 456 2.4E-192 T 28-03-2018 IPR016963 Glycoporin RafY AM348_RS10560 ca581d20a3e883260a6680c1b5940abc 456 Pfam PF11471 Maltoporin periplasmic N-terminal extension 1 52 3.0E-12 T 28-03-2018 IPR021570 LamB-type porin N-terminal domain AM348_RS12660 aaca794b10ff9e4901c6ee24ed46c343 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 1.1E-29 T 28-03-2018 IPR010279 Protein of unknown function DUF883, ElaB AM348_RS03925 301bfb78b586ac1b2667ea6825e5d251 632 Pfam PF13667 ThiC-associated domain 28 109 2.8E-33 T 28-03-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM348_RS03925 301bfb78b586ac1b2667ea6825e5d251 632 Pfam PF01964 Radical SAM ThiC family 149 597 8.0E-200 T 28-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM348_RS03925 301bfb78b586ac1b2667ea6825e5d251 632 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 148 600 3.2E-224 T 28-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM348_RS03925 301bfb78b586ac1b2667ea6825e5d251 632 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 148 602 56.364 T 28-03-2018 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 AM348_RS06735 eb48cdbcfbf1e1342243ad1f6e845258 352 Pfam PF02687 FtsX-like permease family 253 342 1.2E-5 T 28-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM348_RS06735 eb48cdbcfbf1e1342243ad1f6e845258 352 PIRSF PIRSF003097 50 348 6.9E-108 T 28-03-2018 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 AM348_RS06735 eb48cdbcfbf1e1342243ad1f6e845258 352 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 46 351 6.7E-156 T 28-03-2018 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 AM348_RS18320 bbf9c98caa760402e987bee73467c320 131 Pfam PF01042 Endoribonuclease L-PSP 15 127 4.4E-30 T 28-03-2018 IPR006175 YjgF/YER057c/UK114 family AM348_RS18320 bbf9c98caa760402e987bee73467c320 131 SUPERFAMILY SSF55298 9 129 9.11E-37 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS18320 bbf9c98caa760402e987bee73467c320 131 Gene3D G3DSA:3.30.1330.40 11 131 2.6E-34 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS06230 5c6505a7253e7bf0ce231a5d3396337b 249 SUPERFAMILY SSF51658 3 248 4.54E-61 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS06230 5c6505a7253e7bf0ce231a5d3396337b 249 Gene3D G3DSA:3.20.20.150 1 248 2.8E-29 T 28-03-2018 AM348_RS02560 e56bfb8b54b64fe1cf79c8d0a01c3290 128 SUPERFAMILY SSF47175 23 128 4.37E-34 T 28-03-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 AM348_RS02560 e56bfb8b54b64fe1cf79c8d0a01c3290 128 Pfam PF07361 Cytochrome b562 24 128 3.1E-33 T 28-03-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 AM348_RS02560 e56bfb8b54b64fe1cf79c8d0a01c3290 128 Gene3D G3DSA:1.20.120.10 24 128 2.6E-20 T 28-03-2018 AM348_RS02560 e56bfb8b54b64fe1cf79c8d0a01c3290 128 PIRSF PIRSF000029 1 128 5.8E-57 T 28-03-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 AM348_RS04550 bed547e4914cc7151cfe0e14a7a7bf3b 148 SUPERFAMILY SSF47413 92 147 2.62E-7 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS04550 bed547e4914cc7151cfe0e14a7a7bf3b 148 Gene3D G3DSA:1.10.260.40 64 148 1.7E-9 T 28-03-2018 AM348_RS04550 bed547e4914cc7151cfe0e14a7a7bf3b 148 SMART SM00530 92 146 1.5E-6 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS04550 bed547e4914cc7151cfe0e14a7a7bf3b 148 Pfam PF01381 Helix-turn-helix 93 144 1.8E-7 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 28-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 Gene3D G3DSA:3.40.1060.10 153 288 7.4E-43 T 28-03-2018 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 Gene3D G3DSA:3.30.499.10 305 466 1.2E-52 T 28-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 Pfam PF00330 Aconitase family (aconitate hydratase) 7 457 3.6E-160 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 SUPERFAMILY SSF53732 2 464 6.93E-167 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 Gene3D G3DSA:3.30.499.10 1 152 4.6E-40 T 28-03-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 466 62.553 T 28-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 82 95 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 209 222 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 286 300 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 119 132 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 195 208 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 343 354 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 399 412 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 133 148 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 PRINTS PR00415 Aconitase family signature 108 116 1.4E-50 T 28-03-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 465 9.2E-279 T 28-03-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 AM348_RS01300 d6ad2209ef7e8d6dd7850034a3580814 466 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 28-03-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 Pfam PF08402 TOBE domain 295 375 1.1E-20 T 28-03-2018 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 Pfam PF00005 ABC transporter 36 177 4.4E-36 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.3E-149 T 28-03-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 Gene3D G3DSA:2.40.50.140 298 368 2.6E-7 T 28-03-2018 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 SUPERFAMILY SSF52540 19 256 4.93E-87 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 Gene3D G3DSA:3.40.50.300 16 287 4.6E-76 T 28-03-2018 AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 SMART SM00382 44 227 1.3E-17 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS20930 dae89daabfc7885b21895cabc812dd11 377 SUPERFAMILY SSF50331 253 375 1.22E-17 T 28-03-2018 IPR008995 Molybdate/tungstate binding, C-terminal AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 Pfam PF13802 Galactose mutarotase-like 159 218 1.9E-15 T 28-03-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 Gene3D G3DSA:2.60.40.1760 1 245 3.9E-56 T 28-03-2018 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 SUPERFAMILY SSF51011 586 665 7.91E-21 T 28-03-2018 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 SUPERFAMILY SSF51445 263 603 2.86E-91 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 SUPERFAMILY SSF74650 1 247 7.53E-67 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 Gene3D G3DSA:3.20.20.80 246 602 1.0E-107 T 28-03-2018 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 Gene3D G3DSA:2.60.40.1180 666 771 5.1E-32 T 28-03-2018 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 Pfam PF01055 Glycosyl hydrolases family 31 240 667 5.6E-120 T 28-03-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 SUPERFAMILY SSF117125 666 771 2.35E-34 T 28-03-2018 AM348_RS05730 6a598ca7c46b6352a543b8a309b6b726 772 Gene3D G3DSA:2.60.40.1180 603 665 1.6E-22 T 28-03-2018 AM348_RS17315 c4b65cf29406208fb0d698e6d9d68cb3 297 PIRSF PIRSF016184 1 295 9.6E-90 T 28-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM348_RS17315 c4b65cf29406208fb0d698e6d9d68cb3 297 SUPERFAMILY SSF54506 1 294 1.96E-66 T 28-03-2018 AM348_RS17315 c4b65cf29406208fb0d698e6d9d68cb3 297 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 295 9.0E-115 T 28-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM348_RS17315 c4b65cf29406208fb0d698e6d9d68cb3 297 Gene3D G3DSA:3.10.310.10 2 126 2.1E-26 T 28-03-2018 AM348_RS17315 c4b65cf29406208fb0d698e6d9d68cb3 297 Gene3D G3DSA:3.10.310.10 127 284 1.3E-32 T 28-03-2018 AM348_RS17315 c4b65cf29406208fb0d698e6d9d68cb3 297 Pfam PF02567 Phenazine biosynthesis-like protein 8 290 8.8E-84 T 28-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 229 310 7.6E-32 T 28-03-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PIRSF PIRSF000310 7 359 3.3E-148 T 28-03-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 Gene3D G3DSA:4.10.480.10 237 311 1.0E-34 T 28-03-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 SUPERFAMILY SSF56770 48 312 1.05E-88 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 64 209 9.7E-28 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 360 5.0E-196 T 28-03-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 18 47 3.9E-7 T 28-03-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 72 96 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 190 213 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 286 299 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 118 141 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 234 252 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 161 185 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 216 233 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 49 71 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 258 284 1.6E-119 T 28-03-2018 AM348_RS00250 a187e6f5656b2c5d52b5ecdc1bd3842a 375 Gene3D G3DSA:3.40.50.700 47 236 4.5E-49 T 28-03-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS17720 0aa81f6cdc62f18383568b214c803872 221 Pfam PF01914 MarC family integral membrane protein 5 217 8.8E-69 T 28-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM348_RS17720 0aa81f6cdc62f18383568b214c803872 221 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 213 5.6E-36 T 28-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM348_RS14085 fe031f7053db09ad396268953f50ec9d 319 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 8 313 7.4E-76 T 28-03-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AM348_RS14085 fe031f7053db09ad396268953f50ec9d 319 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 319 107.935 T 28-03-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AM348_RS14085 fe031f7053db09ad396268953f50ec9d 319 Pfam PF03186 CobD/Cbib protein 7 297 6.4E-107 T 28-03-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 AM348_RS15065 a27b2a22a41d45fcd77ddfeb2fed3e4c 379 Gene3D G3DSA:1.50.10.10 1 379 2.4E-81 T 28-03-2018 AM348_RS15065 a27b2a22a41d45fcd77ddfeb2fed3e4c 379 SUPERFAMILY SSF48208 28 376 6.8E-93 T 28-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM348_RS15065 a27b2a22a41d45fcd77ddfeb2fed3e4c 379 Pfam PF07470 Glycosyl Hydrolase Family 88 38 377 7.0E-110 T 28-03-2018 IPR010905 Glycosyl hydrolase, family 88 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 49.008 T 28-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 Gene3D G3DSA:3.50.30.20 2 151 5.4E-63 T 28-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 Pfam PF00117 Glutamine amidotransferase class-I 197 372 3.3E-50 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 SUPERFAMILY SSF52021 3 144 3.66E-57 T 28-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.2E-11 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.2E-11 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.2E-11 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 SMART SM01097 3 133 6.5E-90 T 28-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 SUPERFAMILY SSF52317 153 378 8.88E-66 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 2.4E-40 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 2.4E-40 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 2.4E-40 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 2.4E-40 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 2.4E-40 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 Gene3D G3DSA:3.40.50.880 152 379 6.3E-69 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 3.0E-52 T 28-03-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.1E-5 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.1E-5 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.1E-5 T 28-03-2018 AM348_RS01535 36c2e67c8fea693e21dc55a393cd4ec7 382 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 7.0E-153 T 28-03-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS07030 a82d7573287cf2ddba160c75b12779e7 133 SMART SM00363 9 72 1.9E-11 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS07030 a82d7573287cf2ddba160c75b12779e7 133 SUPERFAMILY SSF55174 7 103 2.88E-31 T 28-03-2018 AM348_RS07030 a82d7573287cf2ddba160c75b12779e7 133 PIRSF PIRSF016821 6 133 1.4E-40 T 28-03-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 AM348_RS07030 a82d7573287cf2ddba160c75b12779e7 133 Pfam PF01479 S4 domain 9 53 1.0E-12 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS07030 a82d7573287cf2ddba160c75b12779e7 133 Gene3D G3DSA:3.10.290.10 2 105 7.6E-27 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS05075 bac3105c7439c25e5aacbd4cc783067b 93 SUPERFAMILY SSF54534 6 90 2.29E-28 T 28-03-2018 AM348_RS05075 bac3105c7439c25e5aacbd4cc783067b 93 Pfam PF13616 PPIC-type PPIASE domain 14 90 1.4E-20 T 28-03-2018 AM348_RS05075 bac3105c7439c25e5aacbd4cc783067b 93 Gene3D G3DSA:3.10.50.40 1 93 7.3E-30 T 28-03-2018 AM348_RS05075 bac3105c7439c25e5aacbd4cc783067b 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 31 51 - T 28-03-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 AM348_RS22670 3a625c9dba8c9d69e88cb9f37797a58a 343 SUPERFAMILY SSF53822 46 303 3.62E-39 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS22670 3a625c9dba8c9d69e88cb9f37797a58a 343 Gene3D G3DSA:3.40.50.2300 161 305 1.1E-17 T 28-03-2018 AM348_RS22670 3a625c9dba8c9d69e88cb9f37797a58a 343 TIGRFAM TIGR02955 TMAO_TorT: TMAO reductase system periplasmic protein TorT 47 334 3.6E-123 T 28-03-2018 IPR014301 TMAO reductase system, periplasmic protein TorT AM348_RS22670 3a625c9dba8c9d69e88cb9f37797a58a 343 Gene3D G3DSA:3.40.50.2300 46 160 2.2E-13 T 28-03-2018 AM348_RS22670 3a625c9dba8c9d69e88cb9f37797a58a 343 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 46 335 1.9E-74 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS11430 6073e7e6c01354e40a53bf277248f15e 192 Pfam PF00419 Fimbrial protein 27 191 1.4E-19 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS11430 6073e7e6c01354e40a53bf277248f15e 192 Gene3D G3DSA:2.60.40.1090 25 192 6.6E-28 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS11430 6073e7e6c01354e40a53bf277248f15e 192 SUPERFAMILY SSF49401 26 191 5.97E-24 T 28-03-2018 IPR008966 Adhesion domain AM348_RS10770 7fcc23c120a7918528ce25d79b318984 709 Gene3D G3DSA:3.30.1890.10 47 422 2.2E-19 T 28-03-2018 AM348_RS10770 7fcc23c120a7918528ce25d79b318984 709 Gene3D G3DSA:3.40.50.300 510 702 2.4E-18 T 28-03-2018 AM348_RS10770 7fcc23c120a7918528ce25d79b318984 709 SUPERFAMILY SSF52540 512 683 2.18E-18 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10770 7fcc23c120a7918528ce25d79b318984 709 Pfam PF06564 Cellulose biosynthesis protein BcsQ 515 655 2.6E-8 T 28-03-2018 IPR017746 Cellulose synthase operon protein BcsQ AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 145 157 - T 28-03-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 Gene3D G3DSA:1.20.1250.20 254 482 9.7E-10 T 28-03-2018 AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 Hamap MF_01879 Dipeptide and tripeptide permease B [dtpB]. 3 486 45.977 T 28-03-2018 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 483 3.2E-184 T 28-03-2018 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 Gene3D G3DSA:1.20.1250.20 1 198 1.2E-22 T 28-03-2018 AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 SUPERFAMILY SSF103473 244 480 7.46E-25 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 SUPERFAMILY SSF103473 9 200 7.46E-25 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06460 ef4ba0e7f0136095c3243e197b5c9d5b 490 Pfam PF00854 POT family 82 443 9.9E-93 T 28-03-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 AM348_RS12410 6d576859e389ca102cdf338fc2599d7d 392 Gene3D G3DSA:1.20.1250.20 214 392 1.1E-21 T 28-03-2018 AM348_RS12410 6d576859e389ca102cdf338fc2599d7d 392 Pfam PF07690 Major Facilitator Superfamily 223 387 5.2E-16 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS12410 6d576859e389ca102cdf338fc2599d7d 392 Gene3D G3DSA:1.20.1250.20 13 204 4.3E-17 T 28-03-2018 AM348_RS12410 6d576859e389ca102cdf338fc2599d7d 392 Hamap MF_01118 UPF0226 membrane protein . 1 392 29.232 T 28-03-2018 IPR023008 Uncharacterised protein family UPF0226, major facilitator superfamily AM348_RS12410 6d576859e389ca102cdf338fc2599d7d 392 SUPERFAMILY SSF103473 14 391 7.72E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS07945 eb10e06446159f03c5aa469c6393ade0 182 Pfam PF03968 OstA-like protein 37 149 5.7E-32 T 28-03-2018 IPR005653 Organic solvent tolerance-like, N-terminal AM348_RS07945 eb10e06446159f03c5aa469c6393ade0 182 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 28 166 5.4E-51 T 28-03-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AM348_RS07945 eb10e06446159f03c5aa469c6393ade0 182 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 7 167 26.78 T 28-03-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 AM348_RS07945 eb10e06446159f03c5aa469c6393ade0 182 Gene3D G3DSA:2.60.450.10 27 164 9.5E-28 T 28-03-2018 AM348_RS13770 add966d25f816fc7f116da968397e06e 426 TIGRFAM TIGR04006 wcaK: colanic acid biosynthesis pyruvyl transferase WcaK 1 424 7.0E-273 T 28-03-2018 IPR023918 Colanic acid biosynthesis, pyruvyl transferase, WcaK AM348_RS13770 add966d25f816fc7f116da968397e06e 426 Pfam PF04230 Polysaccharide pyruvyl transferase 13 356 4.5E-38 T 28-03-2018 IPR007345 Polysaccharide pyruvyl transferase AM348_RS23600 05a76f01b89bc282e9bbd9cf844d9f80 320 SMART SM00062 24 239 5.2E-30 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS23600 05a76f01b89bc282e9bbd9cf844d9f80 320 Gene3D G3DSA:3.40.190.10 120 320 3.6E-41 T 28-03-2018 AM348_RS23600 05a76f01b89bc282e9bbd9cf844d9f80 320 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 25 320 1.2E-157 T 28-03-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 AM348_RS23600 05a76f01b89bc282e9bbd9cf844d9f80 320 SUPERFAMILY SSF53850 34 306 7.92E-48 T 28-03-2018 AM348_RS23600 05a76f01b89bc282e9bbd9cf844d9f80 320 Gene3D G3DSA:3.40.190.10 20 119 4.3E-11 T 28-03-2018 AM348_RS23600 05a76f01b89bc282e9bbd9cf844d9f80 320 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 24 247 2.3E-27 T 28-03-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 AM348_RS09950 9b37a2cb31f3522412e47cc6f9e1094f 260 Gene3D G3DSA:3.30.2350.10 1 237 2.1E-59 T 28-03-2018 AM348_RS09950 9b37a2cb31f3522412e47cc6f9e1094f 260 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 28-03-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS09950 9b37a2cb31f3522412e47cc6f9e1094f 260 SUPERFAMILY SSF55120 2 238 1.3E-60 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS09950 9b37a2cb31f3522412e47cc6f9e1094f 260 Pfam PF00849 RNA pseudouridylate synthase 11 170 1.8E-26 T 28-03-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 36.218 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 Gene3D G3DSA:3.30.1360.80 3 161 1.7E-64 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 2.0E-50 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 2.0E-50 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 2.0E-50 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 2.0E-50 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 2.0E-50 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 155 3.0E-84 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 153 4.0E-62 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 SUPERFAMILY SSF63411 4 162 5.04E-67 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS10555 7aab317771231f8684b776940f207ce8 171 PIRSF PIRSF006160 1 162 2.7E-66 T 28-03-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 AM348_RS11620 04c67ad32ec8fcaacd07631421b3be6b 360 Gene3D G3DSA:3.40.50.720 1 229 2.3E-11 T 28-03-2018 AM348_RS11620 04c67ad32ec8fcaacd07631421b3be6b 360 SUPERFAMILY SSF51735 3 136 6.79E-13 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS11620 04c67ad32ec8fcaacd07631421b3be6b 360 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 40 107 1.1E-6 T 28-03-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 Pfam PF02901 Pyruvate formate lyase-like 23 614 5.5E-207 T 28-03-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 28-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 PIRSF PIRSF000379 8 760 0.0 T 28-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 Pfam PF01228 Glycine radical 630 741 1.4E-43 T 28-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 28-03-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 SUPERFAMILY SSF51998 4 759 7.32E-294 T 28-03-2018 AM348_RS20785 15e410fafa2f773c37ec5f50a3c2301c 760 Gene3D G3DSA:3.20.70.20 2 760 8.6E-297 T 28-03-2018 AM348_RS06815 e0df43473130f4b8e6b60dd179eb50fd 154 ProDom PD059127 YHHA MEMBRANE OUTER PRECURSOR SIGNAL STY4259 ORFQ ECS4294 1 154 3.0E-36 T 28-03-2018 IPR020158 Protein of unknown function DUF2756 AM348_RS06815 e0df43473130f4b8e6b60dd179eb50fd 154 Pfam PF10956 Protein of unknown function (DUF2756) 1 105 2.9E-50 T 28-03-2018 IPR020158 Protein of unknown function DUF2756 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 28-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.997 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 28-03-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 Pfam PF00342 Phosphoglucose isomerase 52 541 1.2E-255 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 2.3E-55 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 2.3E-55 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 2.3E-55 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 2.3E-55 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 2.3E-55 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 2.3E-55 T 28-03-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 Gene3D G3DSA:3.40.50.10490 145 258 2.9E-53 T 28-03-2018 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 Gene3D G3DSA:1.10.1390.10 513 549 1.2E-21 T 28-03-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 Gene3D G3DSA:3.40.50.10490 259 512 5.0E-125 T 28-03-2018 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 Gene3D G3DSA:3.40.50.10490 1 144 5.9E-49 T 28-03-2018 AM348_RS03665 bbde896ef5271d888962f52b4e6febb0 549 SUPERFAMILY SSF53697 5 548 1.11E-226 T 28-03-2018 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 Hamap MF_01565 Zinc transport protein ZntB [zntB]. 1 327 71.803 T 28-03-2018 IPR023714 Zinc transport protein ZntB GO:0005385|GO:0005886|GO:0071577 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 Gene3D G3DSA:1.20.58.340 140 255 1.7E-17 T 28-03-2018 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 SUPERFAMILY SSF143865 8 255 1.7E-49 T 28-03-2018 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 Gene3D G3DSA:1.20.58.340 256 327 3.8E-15 T 28-03-2018 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 Gene3D G3DSA:3.30.460.20 1 139 5.0E-20 T 28-03-2018 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 SUPERFAMILY SSF144083 265 324 1.02E-12 T 28-03-2018 AM348_RS16755 004bbac6f16f022e69a31bb83dcccf22 327 Pfam PF01544 CorA-like Mg2+ transporter protein 38 323 1.6E-63 T 28-03-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 AM348_RS02510 2545b13652867a5c4fce058f28636b68 154 PIRSF PIRSF000368 1 154 2.2E-60 T 28-03-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 AM348_RS02510 2545b13652867a5c4fce058f28636b68 154 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 153 9.8E-65 T 28-03-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 AM348_RS02510 2545b13652867a5c4fce058f28636b68 154 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 28-03-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 AM348_RS02510 2545b13652867a5c4fce058f28636b68 154 Gene3D G3DSA:3.20.20.70 12 129 9.2E-11 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS02510 2545b13652867a5c4fce058f28636b68 154 Pfam PF13353 4Fe-4S single cluster domain 12 151 9.2E-52 T 28-03-2018 AM348_RS02510 2545b13652867a5c4fce058f28636b68 154 SUPERFAMILY SSF102114 24 105 1.08E-6 T 28-03-2018 AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 SUPERFAMILY SSF51735 3 264 5.12E-67 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 SUPERFAMILY SSF48179 273 482 7.14E-51 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 Gene3D G3DSA:3.40.50.720 1 268 2.1E-62 T 28-03-2018 AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 Gene3D G3DSA:1.10.1040.10 272 483 1.3E-60 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 4.5E-39 T 28-03-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 203 458 1.3E-79 T 28-03-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 AM348_RS17680 8cdc33e580132ef1c52261e32d6c98a2 483 Hamap MF_00670 Altronate oxidoreductase [uxaB]. 1 483 56.634 T 28-03-2018 IPR023668 Altronate oxidoreductase GO:0009026|GO:0055114 KEGG: 00040+1.1.1.58 AM348_RS07730 902263e45210976fd2c777096c303787 197 SUPERFAMILY SSF52972 2 184 7.19E-64 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS07730 902263e45210976fd2c777096c303787 197 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 32.468 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS07730 902263e45210976fd2c777096c303787 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 182 1.2E-71 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS07730 902263e45210976fd2c777096c303787 197 Gene3D G3DSA:3.90.950.10 1 188 8.4E-72 T 28-03-2018 IPR029001 Inosine triphosphate pyrophosphatase-like AM348_RS07730 902263e45210976fd2c777096c303787 197 Pfam PF02545 Maf-like protein 4 184 6.8E-60 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS07730 902263e45210976fd2c777096c303787 197 PIRSF PIRSF006305 1 191 9.4E-57 T 28-03-2018 IPR003697 Maf-like protein GO:0047429 AM348_RS14985 f09598cd6f883f5de5933e4a3e240c2d 116 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 4 107 29.215 T 28-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM348_RS14985 f09598cd6f883f5de5933e4a3e240c2d 116 SUPERFAMILY SSF63592 4 101 1.96E-40 T 28-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM348_RS14985 f09598cd6f883f5de5933e4a3e240c2d 116 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 12 101 5.0E-45 T 28-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM348_RS14985 f09598cd6f883f5de5933e4a3e240c2d 116 Gene3D G3DSA:1.10.4000.10 6 105 2.8E-47 T 28-03-2018 AM348_RS14985 f09598cd6f883f5de5933e4a3e240c2d 116 Pfam PF05247 Flagellar transcriptional activator (FlhD) 4 103 1.1E-42 T 28-03-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 Gene3D G3DSA:1.10.260.40 2 57 1.6E-24 T 28-03-2018 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 Gene3D G3DSA:3.40.50.2300 168 332 3.2E-45 T 28-03-2018 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.3E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.3E-6 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 SUPERFAMILY SSF53822 61 330 1.61E-77 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 28-03-2018 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 Pfam PF13377 Periplasmic binding protein-like domain 169 329 2.5E-33 T 28-03-2018 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 Gene3D G3DSA:3.40.50.2300 58 167 9.1E-23 T 28-03-2018 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.5E-20 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 SUPERFAMILY SSF47413 1 59 9.5E-19 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS13205 1e93300a32fbd4ae1809fee3b6600318 341 SMART SM00354 1 71 3.8E-34 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS16575 92c3a203658a28011489d61415295218 296 SUPERFAMILY SSF161098 90 277 4.84E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS16575 92c3a203658a28011489d61415295218 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 16 66 1.8E-8 T 28-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM348_RS16575 92c3a203658a28011489d61415295218 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 292 6.9E-20 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS16575 92c3a203658a28011489d61415295218 296 Gene3D G3DSA:1.10.3720.10 14 285 3.0E-28 T 28-03-2018 AM348_RS20095 f615df7ca8ae226a1eb9d802d44544b2 132 Pfam PF10627 Curli assembly protein CsgE 30 131 3.5E-34 T 28-03-2018 IPR018900 Curli assembly protein CsgE AM348_RS05205 fb19fcbca898ec768cbd53f5059f20fb 139 Gene3D G3DSA:3.40.1650.10 1 139 1.9E-40 T 28-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM348_RS05205 fb19fcbca898ec768cbd53f5059f20fb 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 33.402 T 28-03-2018 IPR023064 D-ribose pyranase GO:0016872 AM348_RS05205 fb19fcbca898ec768cbd53f5059f20fb 139 SUPERFAMILY SSF102546 1 139 4.45E-45 T 28-03-2018 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM348_RS05205 fb19fcbca898ec768cbd53f5059f20fb 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 2.0E-48 T 28-03-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 AM348_RS18375 0dca350e118dda4d97d44a120acdaa21 238 Gene3D G3DSA:2.60.40.10 148 233 2.5E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS18375 0dca350e118dda4d97d44a120acdaa21 238 SUPERFAMILY SSF49354 21 142 3.14E-19 T 28-03-2018 IPR008962 PapD-like AM348_RS18375 0dca350e118dda4d97d44a120acdaa21 238 Gene3D G3DSA:2.60.40.10 25 147 1.4E-23 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS18375 0dca350e118dda4d97d44a120acdaa21 238 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 144 1.1E-18 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS01120 6243c87d7a0a75a97af3d1366bc9d324 187 SUPERFAMILY SSF55846 2 178 8.38E-70 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS01120 6243c87d7a0a75a97af3d1366bc9d324 187 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 30 167 4.0E-27 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS01120 6243c87d7a0a75a97af3d1366bc9d324 187 Gene3D G3DSA:3.40.80.10 1 187 6.1E-55 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS01120 6243c87d7a0a75a97af3d1366bc9d324 187 SMART SM00644 16 166 1.3E-59 T 28-03-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 236 253 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 203 221 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 258 278 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 2.3E-86 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 Gene3D G3DSA:2.40.230.10 33 289 2.2E-95 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 SUPERFAMILY SSF56931 39 288 4.32E-91 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS04875 f0d5b934d61e0c0b9f2a6e199b0a8aa3 289 Pfam PF02253 Phospholipase A1 43 285 5.2E-89 T 28-03-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 9.5E-24 T 28-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 16.658 T 28-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 50 2.0E-20 T 28-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 Gene3D G3DSA:1.10.287.1040 8 75 1.7E-25 T 28-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 SUPERFAMILY SSF116842 3 74 6.54E-22 T 28-03-2018 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 PIRSF PIRSF006488 1 80 4.8E-24 T 28-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS23285 b75420aaa8e1e94ee1d7d8dcbb06d4ac 80 Pfam PF02609 Exonuclease VII small subunit 11 62 8.5E-21 T 28-03-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 AM348_RS08245 6c78a769fe4167821104465c58a84715 457 TIGRFAM TIGR00827 EIIC-GAT: PTS system, galactitol-specific IIC component 9 412 7.9E-202 T 28-03-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 AM348_RS08245 6c78a769fe4167821104465c58a84715 457 PIRSF PIRSF006304 2 454 8.7E-166 T 28-03-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 AM348_RS08245 6c78a769fe4167821104465c58a84715 457 Pfam PF03611 PTS system sugar-specific permease component 8 385 4.1E-80 T 28-03-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 AM348_RS13230 0da7db241ad2ed4e017e9332874d57c8 239 Pfam PF02698 DUF218 domain 48 170 5.7E-18 T 28-03-2018 IPR003848 Domain of unknown function DUF218 AM348_RS13230 0da7db241ad2ed4e017e9332874d57c8 239 PIRSF PIRSF005011 1 239 5.8E-156 T 28-03-2018 IPR023604 Uncharacterised protein family SanA AM348_RS13230 0da7db241ad2ed4e017e9332874d57c8 239 Gene3D G3DSA:3.40.50.620 38 174 3.5E-19 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS04990 8f80724177cecc2b20d78fc5156fdfdc 359 Gene3D G3DSA:3.40.50.2000 180 337 5.1E-4 T 28-03-2018 AM348_RS04990 8f80724177cecc2b20d78fc5156fdfdc 359 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 355 3.9E-179 T 28-03-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 AM348_RS04990 8f80724177cecc2b20d78fc5156fdfdc 359 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 359 63.758 T 28-03-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 AM348_RS08960 22cb5753c14ccc0ed0bd677862b1a5ab 346 Gene3D G3DSA:3.20.20.100 15 335 8.6E-87 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS08960 22cb5753c14ccc0ed0bd677862b1a5ab 346 SUPERFAMILY SSF51430 13 331 1.02E-88 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS08960 22cb5753c14ccc0ed0bd677862b1a5ab 346 Pfam PF00248 Aldo/keto reductase family 28 332 3.5E-79 T 28-03-2018 IPR023210 NADP-dependent oxidoreductase domain AM348_RS22705 0db1fb86b87f16df9416ec43ae83fc6e 178 Pfam PF00419 Fimbrial protein 37 177 8.5E-17 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS22705 0db1fb86b87f16df9416ec43ae83fc6e 178 SUPERFAMILY SSF49401 42 178 5.97E-29 T 28-03-2018 IPR008966 Adhesion domain AM348_RS22705 0db1fb86b87f16df9416ec43ae83fc6e 178 Gene3D G3DSA:2.60.40.1090 34 178 1.5E-31 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS06270 6fd8a45c7d3b4072c6ea00dc04ae3a56 564 Gene3D G3DSA:3.40.720.10 243 545 1.3E-18 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS06270 6fd8a45c7d3b4072c6ea00dc04ae3a56 564 Pfam PF00884 Sulfatase 250 539 1.8E-47 T 28-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM348_RS06270 6fd8a45c7d3b4072c6ea00dc04ae3a56 564 SUPERFAMILY SSF53649 250 543 7.1E-19 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS06270 6fd8a45c7d3b4072c6ea00dc04ae3a56 564 Pfam PF08019 Domain of unknown function (DUF1705) 57 170 1.1E-18 T 28-03-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 Gene3D G3DSA:3.10.450.50 3 130 6.1E-42 T 28-03-2018 AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 Gene3D G3DSA:3.10.450.50 136 151 0.23 T 28-03-2018 AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 SUPERFAMILY SSF54427 25 129 5.26E-37 T 28-03-2018 IPR032710 NTF2-like domain AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 Pfam PF02810 SEC-C motif 134 151 5.2E-10 T 28-03-2018 IPR004027 SEC-C motif AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 Pfam PF02810 SEC-C motif 3 19 1.1E-4 T 28-03-2018 IPR004027 SEC-C motif AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 SUPERFAMILY SSF103642 131 151 2.94E-7 T 28-03-2018 AM348_RS15915 d106a5bde889050bff9736cf22db6994 151 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 128 29.86 T 28-03-2018 IPR023006 Uncharacterised protein family UPF0225 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 Gene3D G3DSA:3.40.50.300 1 176 5.0E-28 T 28-03-2018 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 28-03-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 Pfam PF01202 Shikimate kinase 11 165 4.8E-46 T 28-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 24.07 T 28-03-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 PRINTS PR01100 Shikimate kinase family signature 5 20 1.9E-23 T 28-03-2018 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 PRINTS PR01100 Shikimate kinase family signature 29 42 1.9E-23 T 28-03-2018 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 PRINTS PR01100 Shikimate kinase family signature 74 83 1.9E-23 T 28-03-2018 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 PRINTS PR01100 Shikimate kinase family signature 57 65 1.9E-23 T 28-03-2018 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 PRINTS PR01100 Shikimate kinase family signature 95 112 1.9E-23 T 28-03-2018 AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 SUPERFAMILY SSF52540 4 170 1.02E-27 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS23500 0ab4a6d5b5baf6500b9cb500ad510b3f 181 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 41.501 T 28-03-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS04980 1cafd10b495e9147b036c3964d33c3ce 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 66 231 2.8E-53 T 28-03-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS04980 1cafd10b495e9147b036c3964d33c3ce 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 61.738 T 28-03-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS04980 1cafd10b495e9147b036c3964d33c3ce 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 60 237 3.8E-78 T 28-03-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 AM348_RS04980 1cafd10b495e9147b036c3964d33c3ce 246 Gene3D G3DSA:3.20.20.70 84 209 0.0029 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS01455 b1f86a1af4fa8ffe90f49837a0bf7a50 176 Gene3D G3DSA:3.40.50.360 1 176 1.4E-42 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS01455 b1f86a1af4fa8ffe90f49837a0bf7a50 176 SUPERFAMILY SSF52218 2 170 3.03E-46 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS01455 b1f86a1af4fa8ffe90f49837a0bf7a50 176 Pfam PF02525 Flavodoxin-like fold 2 167 2.5E-40 T 28-03-2018 IPR003680 Flavodoxin-like fold AM348_RS01455 b1f86a1af4fa8ffe90f49837a0bf7a50 176 Hamap MF_01414 Glutathione-regulated potassium-efflux system ancillary protein KefF [kefF]. 1 173 53.916 T 28-03-2018 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM348_RS02955 fb72256ec47ab2a0446d22b0b222fd8b 500 Pfam PF13520 Amino acid permease 9 455 2.6E-30 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS02955 fb72256ec47ab2a0446d22b0b222fd8b 500 PIRSF PIRSF006060 1 499 1.3E-58 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS05815 10fcf06e60023f1b76951e840447bcdb 205 Pfam PF03458 UPF0126 domain 91 164 5.9E-22 T 28-03-2018 IPR005115 Uncharacterised domain UPF0126 AM348_RS05815 10fcf06e60023f1b76951e840447bcdb 205 Pfam PF03458 UPF0126 domain 5 79 9.8E-19 T 28-03-2018 IPR005115 Uncharacterised domain UPF0126 AM348_RS14470 6f4d0164db4ba90a10a5fc51643ba04c 123 Gene3D G3DSA:1.20.58.380 5 90 4.7E-20 T 28-03-2018 AM348_RS14470 6f4d0164db4ba90a10a5fc51643ba04c 123 Pfam PF05400 Flagellar protein FliT 21 106 5.3E-18 T 28-03-2018 IPR008622 Flagellar protein FliT AM348_RS14470 6f4d0164db4ba90a10a5fc51643ba04c 123 Hamap MF_01180 Flagellar protein FliT [fliT]. 1 119 25.382 T 28-03-2018 IPR008622 Flagellar protein FliT AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Gene3D G3DSA:3.10.20.310 175 266 2.5E-21 T 28-03-2018 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Pfam PF01103 Surface antigen 448 803 1.7E-103 T 28-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Gene3D G3DSA:3.10.20.310 350 387 0.022 T 28-03-2018 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 803 2.0E-289 T 28-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Gene3D G3DSA:3.10.20.310 267 346 4.1E-12 T 28-03-2018 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Pfam PF07244 Surface antigen variable number repeat 348 421 5.7E-14 T 28-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Pfam PF07244 Surface antigen variable number repeat 266 344 1.8E-11 T 28-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Pfam PF07244 Surface antigen variable number repeat 176 263 2.1E-15 T 28-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Pfam PF07244 Surface antigen variable number repeat 92 172 7.8E-11 T 28-03-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 PIRSF PIRSF006076 1 803 3.8E-260 T 28-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Gene3D G3DSA:3.10.20.310 92 174 4.0E-12 T 28-03-2018 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Gene3D G3DSA:2.40.160.50 388 803 1.1E-87 T 28-03-2018 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Gene3D G3DSA:3.10.20.310 18 91 1.2E-8 T 28-03-2018 AM348_RS00730 a002979c83dbdc1e8386deb03384507d 803 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 803 26.367 T 28-03-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 AM348_RS22740 4982430e5be95f6604649973f29b7640 70 Gene3D G3DSA:3.10.290.10 1 70 3.5E-12 T 28-03-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-6791226 AM348_RS22740 4982430e5be95f6604649973f29b7640 70 Pfam PF13275 S4 domain 9 68 8.4E-23 T 28-03-2018 AM348_RS22740 4982430e5be95f6604649973f29b7640 70 SUPERFAMILY SSF55174 7 69 1.15E-18 T 28-03-2018 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 SUPERFAMILY SSF47384 227 289 9.22E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 Gene3D G3DSA:3.30.565.10 294 449 6.6E-34 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 1.1E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 1.1E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 1.1E-12 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 SMART SM00387 332 440 4.4E-28 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 SUPERFAMILY SSF55874 292 443 9.56E-35 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 SMART SM00304 180 232 6.2E-6 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 Gene3D G3DSA:1.10.287.130 223 289 1.9E-12 T 28-03-2018 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 Pfam PF00672 HAMP domain 182 225 2.9E-7 T 28-03-2018 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 438 3.6E-19 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 3.1E-10 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS07010 8947a6f28ff4647949e40a3814230211 450 SMART SM00388 233 293 7.0E-12 T 28-03-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 AM348_RS04175 fba7a335b7c6f5f8e92fcace9e16b95f 359 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 10 335 1.4E-90 T 28-03-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 AM348_RS08855 680de3b107c16ecb947916092d59f207 227 Pfam PF11153 Protein of unknown function (DUF2931) 6 224 1.1E-49 T 28-03-2018 IPR021326 Protein of unknown function DUF2931 AM348_RS19690 23d27d2d4880a8da7c978b3b2306e4dd 318 SUPERFAMILY SSF81345 3 316 2.88E-79 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS19690 23d27d2d4880a8da7c978b3b2306e4dd 318 Pfam PF01032 FecCD transport family 14 316 1.7E-91 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS19690 23d27d2d4880a8da7c978b3b2306e4dd 318 Gene3D G3DSA:1.10.3470.10 1 318 1.3E-67 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS05590 93d13bfe6f8fe2461ff78a7950fb061e 100 PIRSF PIRSF000699 1 100 1.1E-33 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS05590 93d13bfe6f8fe2461ff78a7950fb061e 100 SUPERFAMILY SSF46973 2 100 2.09E-33 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS05590 93d13bfe6f8fe2461ff78a7950fb061e 100 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 99 1.7E-33 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS05590 93d13bfe6f8fe2461ff78a7950fb061e 100 Gene3D G3DSA:1.20.58.80 3 100 1.0E-35 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS21680 84db5c518d617937cbf46286953013d7 270 Pfam PF05853 beta-keto acid cleavage enzyme 20 264 2.1E-64 T 28-03-2018 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00310+2.3.1.247|KEGG: 00600+2.3.1.24 AM348_RS21680 84db5c518d617937cbf46286953013d7 270 Gene3D G3DSA:3.20.20.70 1 270 1.2E-68 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 3.1E-53 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 SUPERFAMILY SSF50104 2 114 1.0E-47 T 28-03-2018 IPR008991 Translation protein SH3-like domain AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 Pfam PF01245 Ribosomal protein L19 3 113 9.2E-50 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 28-03-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.413 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS11085 0a6f72d7a81887c5ff6d9820e11cd695 115 PIRSF PIRSF002191 1 115 2.3E-50 T 28-03-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 192 1.3E-56 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 28-03-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 SUPERFAMILY SSF53254 1 208 2.23E-58 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 PIRSF PIRSF000709 2 172 1.2E-10 T 28-03-2018 AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 61.88 T 28-03-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 Gene3D G3DSA:3.40.50.1240 1 213 6.3E-53 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS01725 3e7a0eddbf8a88e190b54f3e25baf555 215 SMART SM00855 3 157 2.8E-24 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS10035 b04115e35580c6e979439c0454545b3d 274 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 80 5.9E-18 T 28-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM348_RS10035 b04115e35580c6e979439c0454545b3d 274 Pfam PF01380 SIS domain 121 248 1.3E-19 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS10035 b04115e35580c6e979439c0454545b3d 274 SUPERFAMILY SSF53697 89 256 3.27E-32 T 28-03-2018 AM348_RS10035 b04115e35580c6e979439c0454545b3d 274 Gene3D G3DSA:1.10.10.10 1 80 1.8E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10035 b04115e35580c6e979439c0454545b3d 274 Gene3D G3DSA:3.40.50.10490 81 267 3.7E-32 T 28-03-2018 AM348_RS10035 b04115e35580c6e979439c0454545b3d 274 SUPERFAMILY SSF46689 6 82 1.25E-19 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS20310 b399fb2fc964da85bd1a9a6b5a4e3ae2 386 Pfam PF00033 Cytochrome b/b6/petB 24 196 1.7E-51 T 28-03-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AM348_RS20310 b399fb2fc964da85bd1a9a6b5a4e3ae2 386 SUPERFAMILY SSF81342 12 258 1.57E-67 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS20310 b399fb2fc964da85bd1a9a6b5a4e3ae2 386 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 257 341 3.0E-26 T 28-03-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AM348_RS20310 b399fb2fc964da85bd1a9a6b5a4e3ae2 386 SUPERFAMILY SSF81648 227 341 1.01E-33 T 28-03-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 AM348_RS20310 b399fb2fc964da85bd1a9a6b5a4e3ae2 386 Gene3D G3DSA:1.20.810.10 3 386 1.6E-108 T 28-03-2018 IPR027387 Cytochrome b/b6-like domain Reactome: R-HSA-611105 AM348_RS21270 c31a1ae748f3fbdd771ebbb3505b80ae 377 Gene3D G3DSA:3.40.1710.10 45 196 2.1E-23 T 28-03-2018 AM348_RS21270 c31a1ae748f3fbdd771ebbb3505b80ae 377 Pfam PF12698 ABC-2 family transporter protein 28 370 8.1E-39 T 28-03-2018 AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 SUPERFAMILY SSF46894 132 234 2.07E-26 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 Gene3D G3DSA:1.10.10.10 126 239 7.0E-29 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 SMART SM00448 5 116 8.6E-45 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 Gene3D G3DSA:3.40.50.2300 2 125 2.0E-38 T 28-03-2018 AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 SUPERFAMILY SSF52172 3 126 8.4E-42 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS07005 d8521a76d5088ea0467c0daab9e28465 239 SMART SM00862 156 232 1.7E-23 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS17010 1132f761aadba283833c06c43d382916 447 Pfam PF07063 Domain of unknown function (DUF1338) 9 401 1.0E-120 T 28-03-2018 IPR009770 Domain of unknown function DUF1338 AM348_RS17010 1132f761aadba283833c06c43d382916 447 SMART SM01150 11 401 8.4E-228 T 28-03-2018 IPR009770 Domain of unknown function DUF1338 AM348_RS18510 179d2899886cc8e8cd0225b1744852ec 232 Gene3D G3DSA:3.30.450.20 28 158 1.4E-16 T 28-03-2018 AM348_RS18510 179d2899886cc8e8cd0225b1744852ec 232 Gene3D G3DSA:3.30.450.20 159 229 7.1E-7 T 28-03-2018 AM348_RS18455 5724bc3f189f3be8ee9ca876abc83dc5 240 SUPERFAMILY SSF53850 4 235 8.58E-36 T 28-03-2018 AM348_RS18455 5724bc3f189f3be8ee9ca876abc83dc5 240 Pfam PF13531 Bacterial extracellular solute-binding protein 5 234 1.7E-36 T 28-03-2018 AM348_RS18455 5724bc3f189f3be8ee9ca876abc83dc5 240 Gene3D G3DSA:3.40.190.10 2 73 7.7E-6 T 28-03-2018 AM348_RS18455 5724bc3f189f3be8ee9ca876abc83dc5 240 Gene3D G3DSA:3.40.190.10 74 158 3.4E-12 T 28-03-2018 AM348_RS18455 5724bc3f189f3be8ee9ca876abc83dc5 240 Gene3D G3DSA:3.40.190.10 159 231 0.02 T 28-03-2018 AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 28-03-2018 IPR030390 RNA methyltransferase TrmA, active site AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 374 2.1E-215 T 28-03-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 79.647 T 28-03-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 SUPERFAMILY SSF53335 3 374 1.05E-52 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 3 367 1.2E-54 T 28-03-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 28-03-2018 IPR030391 RNA methyltransferase TrmA, conserved site AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 Gene3D G3DSA:3.40.50.150 1 373 3.2E-44 T 28-03-2018 AM348_RS20910 162937ef973ce04e168793fafb8cb467 375 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 208 374 6.5E-17 T 28-03-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 AM348_RS18220 ec540b1abef5acac4d70886267c5e4df 79 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 2.3E-19 T 28-03-2018 IPR010710 Protein of unknown function DUF1289 AM348_RS20525 ef797697cd7675d1f30ca28622485ec9 717 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 8 705 0.0 T 28-03-2018 IPR010020 Integral membrane protein, YccS/YhfK AM348_RS20525 ef797697cd7675d1f30ca28622485ec9 717 Pfam PF13515 Fusaric acid resistance protein-like 405 525 1.1E-24 T 28-03-2018 AM348_RS20525 ef797697cd7675d1f30ca28622485ec9 717 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 8 706 0.0 T 28-03-2018 IPR010019 Integral membrane protein, YccS AM348_RS20525 ef797697cd7675d1f30ca28622485ec9 717 Pfam PF12805 FUSC-like inner membrane protein yccS 66 345 3.0E-112 T 28-03-2018 IPR032692 Integral membrane protein YccS, N-terminal AM348_RS07745 527deb3e00b0eb5923f5689c854c4fab 481 PIRSF PIRSF004919 14 481 2.5E-154 T 28-03-2018 IPR025502 TldD AM348_RS07745 527deb3e00b0eb5923f5689c854c4fab 481 Gene3D G3DSA:3.30.2290.10 17 240 1.6E-54 T 28-03-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal domain AM348_RS07745 527deb3e00b0eb5923f5689c854c4fab 481 SUPERFAMILY SSF111283 22 480 1.23E-130 T 28-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM348_RS07745 527deb3e00b0eb5923f5689c854c4fab 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 1.1E-65 T 28-03-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 AM348_RS14920 76432a80f1ffd55faaf29b0593a9b285 212 Pfam PF12408 Ribose-5-phosphate isomerase 164 210 1.4E-23 T 28-03-2018 IPR022133 Ribose-5-phosphate isomerase, C-terminal AM348_RS14920 76432a80f1ffd55faaf29b0593a9b285 212 Pfam PF02502 Ribose/Galactose Isomerase 3 144 8.7E-30 T 28-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AM348_RS14920 76432a80f1ffd55faaf29b0593a9b285 212 SUPERFAMILY SSF89623 1 161 2.09E-37 T 28-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AM348_RS14920 76432a80f1ffd55faaf29b0593a9b285 212 Gene3D G3DSA:3.40.1400.10 1 212 3.8E-57 T 28-03-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 AM348_RS22250 30b05326e5ebcfc5a3030baac7534a31 255 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 3 191 7.3E-17 T 28-03-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 AM348_RS22250 30b05326e5ebcfc5a3030baac7534a31 255 Gene3D G3DSA:1.20.1630.10 2 248 1.0E-29 T 28-03-2018 AM348_RS10265 30f7fc745b60ae707a0f7127fc5f852f 119 Pfam PF00072 Response regulator receiver domain 3 83 3.9E-14 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10265 30f7fc745b60ae707a0f7127fc5f852f 119 SMART SM00448 1 109 7.5E-17 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10265 30f7fc745b60ae707a0f7127fc5f852f 119 Gene3D G3DSA:3.40.50.2300 1 116 1.2E-21 T 28-03-2018 AM348_RS10265 30f7fc745b60ae707a0f7127fc5f852f 119 SUPERFAMILY SSF52172 1 83 2.85E-22 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS22585 124d79a4639d871075f63b98fea78554 284 Gene3D G3DSA:1.10.10.60 160 231 7.1E-8 T 28-03-2018 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 Gene3D G3DSA:2.60.120.280 26 159 2.1E-15 T 28-03-2018 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 Gene3D G3DSA:1.10.10.60 232 284 9.9E-13 T 28-03-2018 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 276 1.9E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 260 1.9E-5 T 28-03-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 SMART SM00342 193 276 2.4E-29 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 SUPERFAMILY SSF51182 41 90 3.92E-6 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS22585 124d79a4639d871075f63b98fea78554 284 SUPERFAMILY SSF46689 229 279 5.38E-12 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 230 272 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 Pfam PF12852 Cupin 2 161 2.3E-24 T 28-03-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain AM348_RS22585 124d79a4639d871075f63b98fea78554 284 Pfam PF12833 Helix-turn-helix domain 199 278 1.1E-19 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS22585 124d79a4639d871075f63b98fea78554 284 SUPERFAMILY SSF46689 177 224 3.33E-5 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS12330 7f0612befda49aa7aba5b1734ad3fa95 251 Pfam PF04333 MlaA lipoprotein 29 222 4.5E-66 T 28-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM348_RS12330 7f0612befda49aa7aba5b1734ad3fa95 251 PRINTS PR01805 VacJ lipoprotein signature 30 43 2.9E-33 T 28-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM348_RS12330 7f0612befda49aa7aba5b1734ad3fa95 251 PRINTS PR01805 VacJ lipoprotein signature 138 155 2.9E-33 T 28-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM348_RS12330 7f0612befda49aa7aba5b1734ad3fa95 251 PRINTS PR01805 VacJ lipoprotein signature 48 64 2.9E-33 T 28-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM348_RS12330 7f0612befda49aa7aba5b1734ad3fa95 251 PRINTS PR01805 VacJ lipoprotein signature 99 116 2.9E-33 T 28-03-2018 IPR007428 MlaA lipoprotein GO:0016020 AM348_RS03640 d734d1e7c87bbf2eb382b06223a158c3 136 Hamap MF_01048 Protein PsiE [psiE]. 3 136 25.279 T 28-03-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 AM348_RS03640 d734d1e7c87bbf2eb382b06223a158c3 136 Pfam PF06146 Phosphate-starvation-inducible E 63 123 7.0E-16 T 28-03-2018 IPR020948 Phosphate-starvation-induced PsiE-like AM348_RS03640 d734d1e7c87bbf2eb382b06223a158c3 136 PIRSF PIRSF029598 1 136 1.5E-52 T 28-03-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 SUPERFAMILY SSF82861 845 928 1.11E-8 T 28-03-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 Gene3D G3DSA:2.30.30.60 946 996 5.8E-13 T 28-03-2018 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 959 993 - T 28-03-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 Pfam PF00924 Mechanosensitive ion channel 887 1086 4.1E-61 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 Pfam PF12795 Mechanosensitive ion channel porin domain 50 289 6.1E-64 T 28-03-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 SUPERFAMILY SSF82689 997 1097 7.06E-27 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 SUPERFAMILY SSF50182 930 995 1.05E-16 T 28-03-2018 IPR010920 LSM domain AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 Gene3D G3DSA:3.30.70.100 997 1091 4.4E-21 T 28-03-2018 AM348_RS23020 7093e3ad050a47a421e370845588f868 1121 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 509 826 1.8E-94 T 28-03-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 PIRSF PIRSF000538 2 543 4.5E-74 T 28-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 Gene3D G3DSA:3.30.420.40 276 545 6.7E-67 T 28-03-2018 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 SUPERFAMILY SSF53067 4 263 9.07E-61 T 28-03-2018 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 5 538 1.0E-211 T 28-03-2018 IPR006003 FGGY carbohydrate kinase, pentulose kinase GO:0005975|GO:0016773 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 262 4.6E-32 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 Gene3D G3DSA:3.30.420.40 1 263 8.0E-67 T 28-03-2018 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 282 488 1.8E-42 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS11455 8f82749f5f8463c0938d5b62acea0753 545 SUPERFAMILY SSF53067 280 533 4.05E-55 T 28-03-2018 AM348_RS15000 27aef79b6f38507bff3f35f41ac0c376 309 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 13 66 1.3E-20 T 28-03-2018 IPR025713 Motility protein B, N-terminal domain AM348_RS15000 27aef79b6f38507bff3f35f41ac0c376 309 SUPERFAMILY SSF103088 157 265 8.24E-20 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS15000 27aef79b6f38507bff3f35f41ac0c376 309 Gene3D G3DSA:3.30.1330.60 108 295 4.6E-41 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS15000 27aef79b6f38507bff3f35f41ac0c376 309 Pfam PF00691 OmpA family 161 258 3.1E-13 T 28-03-2018 IPR006665 OmpA-like domain AM348_RS15090 779958b67073333c951251280e3825e0 322 Pfam PF08003 Protein of unknown function (DUF1698) 7 321 9.7E-173 T 28-03-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like AM348_RS15090 779958b67073333c951251280e3825e0 322 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 320 5.5E-147 T 28-03-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 AM348_RS15090 779958b67073333c951251280e3825e0 322 Gene3D G3DSA:3.40.50.150 75 322 5.5E-24 T 28-03-2018 AM348_RS15090 779958b67073333c951251280e3825e0 322 SUPERFAMILY SSF53335 90 322 4.33E-35 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS15090 779958b67073333c951251280e3825e0 322 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 321 54.493 T 28-03-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 AM348_RS23075 9360b453ccfb5e4d97c0c15db1c2a4f0 117 Gene3D G3DSA:3.30.70.100 1 117 5.1E-62 T 28-03-2018 AM348_RS23075 9360b453ccfb5e4d97c0c15db1c2a4f0 117 PIRSF PIRSF007028 1 117 5.8E-55 T 28-03-2018 IPR009874 Protein of unknown function DUF1428 AM348_RS23075 9360b453ccfb5e4d97c0c15db1c2a4f0 117 SUPERFAMILY SSF54909 1 116 1.36E-53 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS23075 9360b453ccfb5e4d97c0c15db1c2a4f0 117 Pfam PF07237 Protein of unknown function (DUF1428) 2 103 1.2E-47 T 28-03-2018 IPR009874 Protein of unknown function DUF1428 AM348_RS12870 d0060e41924aba2779045bb4cc56fc4d 415 Pfam PF00916 Sulfate permease family 30 154 2.8E-17 T 28-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM348_RS12870 d0060e41924aba2779045bb4cc56fc4d 415 Pfam PF00916 Sulfate permease family 162 367 5.6E-22 T 28-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM348_RS15480 44294c6e26662cea2c86ed10a34db857 88 SUPERFAMILY SSF55229 32 85 2.62E-18 T 28-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM348_RS15480 44294c6e26662cea2c86ed10a34db857 88 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 2.2E-36 T 28-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM348_RS15480 44294c6e26662cea2c86ed10a34db857 88 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 9.9E-25 T 28-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM348_RS15480 44294c6e26662cea2c86ed10a34db857 88 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 19.757 T 28-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM348_RS15480 44294c6e26662cea2c86ed10a34db857 88 Gene3D G3DSA:3.30.1070.10 1 83 3.8E-29 T 28-03-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 AM348_RS22080 3c75cffce3cb7f31907f3b1fc470d22e 199 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 4 164 25.849 T 28-03-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AM348_RS22080 3c75cffce3cb7f31907f3b1fc470d22e 199 Pfam PF04390 Lipopolysaccharide-assembly 42 159 3.7E-15 T 28-03-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 AM348_RS22080 3c75cffce3cb7f31907f3b1fc470d22e 199 Gene3D G3DSA:3.30.160.150 19 173 1.7E-47 T 28-03-2018 AM348_RS01465 f24f09946273a382f9b027ebd574a31f 447 Gene3D G3DSA:1.20.1250.20 13 210 1.5E-32 T 28-03-2018 AM348_RS01465 f24f09946273a382f9b027ebd574a31f 447 Pfam PF00083 Sugar (and other) transporter 31 435 2.7E-50 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS01465 f24f09946273a382f9b027ebd574a31f 447 SUPERFAMILY SSF103473 7 429 3.4E-76 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS01465 f24f09946273a382f9b027ebd574a31f 447 Gene3D G3DSA:1.20.1250.20 222 446 2.3E-32 T 28-03-2018 AM348_RS02620 673033208c0a21ef90d3a1e97802aa08 174 Gene3D G3DSA:1.20.120.650 95 174 1.0E-17 T 28-03-2018 AM348_RS02620 673033208c0a21ef90d3a1e97802aa08 174 Gene3D G3DSA:1.10.10.10 2 94 4.2E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02620 673033208c0a21ef90d3a1e97802aa08 174 SUPERFAMILY SSF46785 23 110 1.3E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS02620 673033208c0a21ef90d3a1e97802aa08 174 Pfam PF09204 Bacterial self-protective colicin-like immunity 94 169 1.6E-13 T 28-03-2018 IPR015287 Colicin D immunity protein domain GO:0015643|GO:0030153 AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SUPERFAMILY SSF51126 1830 2278 1.6E-14 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SUPERFAMILY SSF103515 2815 3100 3.27E-43 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SUPERFAMILY SSF51126 2434 2793 5.65E-37 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.6E-9 T 28-03-2018 IPR024973 ESPR domain AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SUPERFAMILY SSF51126 1474 1628 5.34E-11 T 28-03-2018 IPR011050 Pectin lyase fold/virulence factor AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 2676 3114 1.9E-57 T 28-03-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Gene3D G3DSA:2.40.128.130 2796 3114 6.4E-44 T 28-03-2018 AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00710 2327 2348 3000.0 T 28-03-2018 IPR006626 Parallel beta-helix repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00710 2719 2745 8500.0 T 28-03-2018 IPR006626 Parallel beta-helix repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00710 2902 2930 1700.0 T 28-03-2018 IPR006626 Parallel beta-helix repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00710 1089 1111 91.0 T 28-03-2018 IPR006626 Parallel beta-helix repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00710 759 781 2400.0 T 28-03-2018 IPR006626 Parallel beta-helix repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00710 2464 2493 4200.0 T 28-03-2018 IPR006626 Parallel beta-helix repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Gene3D G3DSA:2.160.20.20 2239 2795 2.6E-31 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Gene3D G3DSA:2.160.20.20 849 1144 6.7E-7 T 28-03-2018 IPR012332 P22 tailspike C-terminal domain-like AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2604 2634 1.6E-7 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2536 2566 5.4E-9 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1502 1530 4.8E-7 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2446 2476 1.5E-8 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2136 2167 8.6E-12 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1830 1861 5.7E-10 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 SMART SM00869 2835 3098 2.2E-39 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 1503 1529 2.1E-4 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 2137 2166 1.1E-9 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 1435 1459 0.0078 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 1831 1860 6.2E-9 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 2448 2476 6.3E-8 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 2606 2632 6.8E-4 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS22550 4486b34b4b9783497d369d47a071d57d 3114 Pfam PF12951 Passenger-associated-transport-repeat 2536 2565 2.2E-8 T 28-03-2018 IPR013425 Autotransporter-associated beta strand repeat AM348_RS21025 a9a7448ca7e3bacdcedfe84a94aa8a2a 365 SUPERFAMILY SSF50952 21 364 6.54E-44 T 28-03-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 AM348_RS21025 a9a7448ca7e3bacdcedfe84a94aa8a2a 365 Pfam PF07995 Glucose / Sorbosone dehydrogenase 30 362 1.1E-131 T 28-03-2018 IPR012938 Glucose/Sorbosone dehydrogenase AM348_RS21025 a9a7448ca7e3bacdcedfe84a94aa8a2a 365 Gene3D G3DSA:2.120.10.30 15 268 5.6E-48 T 28-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM348_RS21025 a9a7448ca7e3bacdcedfe84a94aa8a2a 365 Gene3D G3DSA:2.120.10.30 269 359 4.5E-16 T 28-03-2018 IPR011042 Six-bladed beta-propeller, TolB-like AM348_RS09295 1a3469215af306ec989627fcd83ff916 48 Pfam PF11036 Virulence promoting factor 1 43 2.1E-24 T 28-03-2018 IPR020196 Uncharacterised protein family YqgB AM348_RS09295 1a3469215af306ec989627fcd83ff916 48 ProDom PD050163 YQGB INNER MEMBRANE STY3241 1 42 2.0E-11 T 28-03-2018 IPR020196 Uncharacterised protein family YqgB AM348_RS10115 973bf859f998fc18537dafb49c31fe66 231 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 229 2.5E-91 T 28-03-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM348_RS10115 973bf859f998fc18537dafb49c31fe66 231 Gene3D G3DSA:3.90.550.10 1 231 1.2E-50 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS10115 973bf859f998fc18537dafb49c31fe66 231 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 227 44.298 T 28-03-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM348_RS10115 973bf859f998fc18537dafb49c31fe66 231 SUPERFAMILY SSF53448 8 227 5.01E-61 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS10115 973bf859f998fc18537dafb49c31fe66 231 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 227 9.8E-79 T 28-03-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM348_RS10115 973bf859f998fc18537dafb49c31fe66 231 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 102 109 - T 28-03-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 AM348_RS22290 ef0751ad1fc13153501c07cf8fe2d2a4 407 Gene3D G3DSA:3.40.50.620 5 237 1.7E-26 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS22290 ef0751ad1fc13153501c07cf8fe2d2a4 407 SUPERFAMILY SSF52402 10 232 1.21E-42 T 28-03-2018 AM348_RS22290 ef0751ad1fc13153501c07cf8fe2d2a4 407 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 30 234 1.9E-17 T 28-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 AM348_RS22290 ef0751ad1fc13153501c07cf8fe2d2a4 407 Pfam PF11922 Domain of unknown function (DUF3440) 354 384 3.5E-7 T 28-03-2018 IPR021845 Protein of unknown function DUF3440 AM348_RS22290 ef0751ad1fc13153501c07cf8fe2d2a4 407 Pfam PF11922 Domain of unknown function (DUF3440) 237 340 1.0E-26 T 28-03-2018 IPR021845 Protein of unknown function DUF3440 AM348_RS19520 8d1e6106e3f21153cc37294ba8f40c8d 341 Gene3D G3DSA:3.20.20.300 1 341 5.7E-81 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS19520 8d1e6106e3f21153cc37294ba8f40c8d 341 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 332 48.516 T 28-03-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822 AM348_RS19520 8d1e6106e3f21153cc37294ba8f40c8d 341 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 7 317 3.4E-100 T 28-03-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 AM348_RS19520 8d1e6106e3f21153cc37294ba8f40c8d 341 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 28-03-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 AM348_RS19520 8d1e6106e3f21153cc37294ba8f40c8d 341 SUPERFAMILY SSF51445 3 312 3.26E-86 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS18680 44c616718011d0c634ffb4bcbd171bdd 283 Gene3D G3DSA:3.60.15.10 20 247 8.8E-23 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS18680 44c616718011d0c634ffb4bcbd171bdd 283 SMART SM00849 36 218 1.6E-16 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS18680 44c616718011d0c634ffb4bcbd171bdd 283 Pfam PF00753 Metallo-beta-lactamase superfamily 35 157 1.5E-5 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS18680 44c616718011d0c634ffb4bcbd171bdd 283 SUPERFAMILY SSF56281 21 242 1.09E-34 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS07810 ef2a2d4e3b832869c00cf8be89e87f63 375 Gene3D G3DSA:3.40.50.300 21 372 1.7E-12 T 28-03-2018 AM348_RS07810 ef2a2d4e3b832869c00cf8be89e87f63 375 SUPERFAMILY SSF52540 69 208 6.59E-14 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07810 ef2a2d4e3b832869c00cf8be89e87f63 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 374 53.456 T 28-03-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 AM348_RS07810 ef2a2d4e3b832869c00cf8be89e87f63 375 Pfam PF03969 AFG1-like ATPase 5 371 1.3E-161 T 28-03-2018 IPR005654 ATPase, AFG1-like GO:0005524 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 SUPERFAMILY SSF51246 278 353 3.61E-20 T 28-03-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 Gene3D G3DSA:3.40.50.20 1 69 1.1E-15 T 28-03-2018 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 Gene3D G3DSA:3.30.470.20 156 339 1.9E-30 T 28-03-2018 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 Pfam PF02222 ATP-grasp domain 88 254 1.7E-55 T 28-03-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 SUPERFAMILY SSF56059 79 274 9.02E-57 T 28-03-2018 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 329 1.4E-113 T 28-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 Gene3D G3DSA:3.30.1490.20 94 155 1.8E-11 T 28-03-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 33.382 T 28-03-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 AM348_RS22780 cc3f33ffd0194a3d133a7a4ea5f91d08 355 SUPERFAMILY SSF52440 2 76 7.63E-16 T 28-03-2018 IPR016185 Pre-ATP-grasp domain AM348_RS22195 c02eeb435854a8548e553565ba07c80d 98 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 26.446 T 28-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM348_RS22195 c02eeb435854a8548e553565ba07c80d 98 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 91 3.7E-28 T 28-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM348_RS22195 c02eeb435854a8548e553565ba07c80d 98 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 1.4E-28 T 28-03-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein AM348_RS22195 c02eeb435854a8548e553565ba07c80d 98 PIRSF PIRSF002736 1 97 1.7E-37 T 28-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM348_RS22195 c02eeb435854a8548e553565ba07c80d 98 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 74 7.0E-34 T 28-03-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 Gene3D G3DSA:3.20.20.80 3 477 9.8E-155 T 28-03-2018 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 28-03-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 392 403 2.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 371 379 2.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 439 451 2.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 414 431 2.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 2.9E-16 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 SUPERFAMILY SSF51445 2 470 1.31E-165 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 371 379 - T 28-03-2018 IPR018120 Glycoside hydrolase family 1, active site AM348_RS09460 fea7a69e498aa115ba166feb7d7b9aa9 477 Pfam PF00232 Glycosyl hydrolase family 1 5 474 1.1E-130 T 28-03-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 259 277 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 93 103 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 72 90 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 282 295 1.7E-69 T 28-03-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 Pfam PF13458 Periplasmic binding protein 31 349 4.5E-57 T 28-03-2018 IPR028081 Leucine-binding protein domain AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 SUPERFAMILY SSF53822 29 363 3.7E-88 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 Gene3D G3DSA:3.40.50.2300 27 176 2.6E-36 T 28-03-2018 AM348_RS06745 e97da68f095df154af5f9b308f6a2f58 372 Gene3D G3DSA:3.40.50.2300 177 353 3.1E-19 T 28-03-2018 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 SUPERFAMILY SSF103473 9 401 9.59E-73 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 Pfam PF07690 Major Facilitator Superfamily 18 261 1.5E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 Hamap MF_01528 Multidrug resistance protein MdtG [mdtG]. 1 404 51.294 T 28-03-2018 IPR023692 Multidrug resistance protein MdtG GO:0005215|GO:0005886 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 Gene3D G3DSA:1.20.1250.20 9 203 6.5E-39 T 28-03-2018 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 PRINTS PR01035 Tetracycline resistance protein signature 142 164 7.8E-12 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 PRINTS PR01035 Tetracycline resistance protein signature 311 331 7.8E-12 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 PRINTS PR01035 Tetracycline resistance protein signature 112 133 7.8E-12 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 PRINTS PR01035 Tetracycline resistance protein signature 23 39 7.8E-12 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 PRINTS PR01035 Tetracycline resistance protein signature 85 109 7.8E-12 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 PRINTS PR01035 Tetracycline resistance protein signature 346 369 7.8E-12 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS20025 a495f0f6cebd50afce25abb213cf2836 406 Gene3D G3DSA:1.20.1250.20 206 403 1.3E-29 T 28-03-2018 AM348_RS15155 e28797cb19ab10c3e3c8f6fc50521897 319 Pfam PF01297 Zinc-uptake complex component A periplasmic 33 315 8.9E-59 T 28-03-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 AM348_RS15155 e28797cb19ab10c3e3c8f6fc50521897 319 SUPERFAMILY SSF53807 32 317 1.08E-76 T 28-03-2018 AM348_RS15155 e28797cb19ab10c3e3c8f6fc50521897 319 Gene3D G3DSA:3.40.50.1980 32 198 4.8E-46 T 28-03-2018 AM348_RS15155 e28797cb19ab10c3e3c8f6fc50521897 319 Gene3D G3DSA:3.40.50.1980 199 317 6.2E-26 T 28-03-2018 AM348_RS22435 0ec942c298658f47b872531b5f931527 311 SUPERFAMILY SSF53822 25 304 5.55E-71 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS22435 0ec942c298658f47b872531b5f931527 311 Gene3D G3DSA:3.40.50.2300 142 306 4.8E-30 T 28-03-2018 AM348_RS22435 0ec942c298658f47b872531b5f931527 311 Pfam PF13407 Periplasmic binding protein domain 29 279 7.3E-52 T 28-03-2018 IPR025997 Periplasmic binding protein AM348_RS22435 0ec942c298658f47b872531b5f931527 311 Gene3D G3DSA:3.40.50.2300 19 141 8.2E-26 T 28-03-2018 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 28-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 Gene3D G3DSA:3.20.20.70 1 220 1.1E-87 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 PIRSF PIRSF001461 1 225 6.1E-107 T 28-03-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 28-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 SUPERFAMILY SSF51366 3 218 6.85E-78 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 1.0E-96 T 28-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS07100 d8edb55ffcdd84892e531771a7b1b2f8 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 8.4E-92 T 28-03-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 Gene3D G3DSA:3.40.50.300 265 496 4.7E-41 T 28-03-2018 AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 Gene3D G3DSA:3.40.50.300 1 253 2.3E-50 T 28-03-2018 AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 SUPERFAMILY SSF52540 4 231 1.62E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 Pfam PF00005 ABC transporter 269 423 1.7E-24 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 Pfam PF00005 ABC transporter 22 169 3.1E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 SUPERFAMILY SSF52540 247 482 2.95E-49 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 SMART SM00382 277 472 2.3E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS05200 48eda421d4885fdfc93d480ec0f05f83 501 SMART SM00382 29 219 7.1E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS10975 f2602c494bfa5d657c06d318cfbcd800 296 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 2 289 4.9E-131 T 28-03-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 AM348_RS10975 f2602c494bfa5d657c06d318cfbcd800 296 SUPERFAMILY SSF51658 5 289 4.84E-58 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS10975 f2602c494bfa5d657c06d318cfbcd800 296 Gene3D G3DSA:3.20.20.150 1 293 4.3E-55 T 28-03-2018 AM348_RS10975 f2602c494bfa5d657c06d318cfbcd800 296 Pfam PF01261 Xylose isomerase-like TIM barrel 31 243 2.9E-30 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 Gene3D G3DSA:3.40.190.10 183 259 3.8E-7 T 28-03-2018 AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 Gene3D G3DSA:1.10.10.10 1 81 3.4E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 Pfam PF03466 LysR substrate binding domain 89 287 2.8E-21 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 SUPERFAMILY SSF53850 92 287 7.14E-27 T 28-03-2018 AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.8E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.5E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.5E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.5E-6 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 SUPERFAMILY SSF46785 6 88 9.95E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09650 b85ff61ba3766f7be3ae0b00a25dc2f9 294 Gene3D G3DSA:3.40.190.10 82 182 1.0E-13 T 28-03-2018 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 SMART SM00382 34 234 6.7E-13 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 SMART SM00382 311 502 3.1E-18 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 Gene3D G3DSA:3.40.50.300 2 266 2.7E-68 T 28-03-2018 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 Gene3D G3DSA:3.40.50.300 272 528 5.1E-73 T 28-03-2018 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 526 0.4 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 265 7.2E-5 T 28-03-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 Pfam PF00005 ABC transporter 303 454 5.5E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 Pfam PF00005 ABC transporter 26 184 6.2E-26 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 SUPERFAMILY SSF52540 275 525 3.85E-66 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 SUPERFAMILY SSF52540 5 256 1.96E-62 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS13020 08ca3c0adc02747128b60945e3220863 529 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS04145 f3de264b164f91ba39b731cace43c760 577 Pfam PF00884 Sulfatase 238 529 5.0E-43 T 28-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM348_RS04145 f3de264b164f91ba39b731cace43c760 577 SUPERFAMILY SSF53649 236 554 5.42E-29 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS04145 f3de264b164f91ba39b731cace43c760 577 Gene3D G3DSA:3.40.720.10 231 534 1.8E-21 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS15785 2a3709faa2fd2a17bfeeeb2442e808ba 197 Gene3D G3DSA:1.10.10.60 6 67 2.0E-14 T 28-03-2018 AM348_RS15785 2a3709faa2fd2a17bfeeeb2442e808ba 197 SUPERFAMILY SSF46689 10 75 2.92E-10 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS15785 2a3709faa2fd2a17bfeeeb2442e808ba 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 66 7.2E-8 T 28-03-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 AM348_RS15785 2a3709faa2fd2a17bfeeeb2442e808ba 197 Gene3D G3DSA:1.10.357.10 68 191 5.2E-11 T 28-03-2018 AM348_RS15785 2a3709faa2fd2a17bfeeeb2442e808ba 197 SUPERFAMILY SSF48498 88 187 1.85E-11 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 SMART SM00850 145 243 1.4E-38 T 28-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 SMART SM00448 1 112 3.3E-21 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 Pfam PF00072 Response regulator receiver domain 3 112 2.5E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 SUPERFAMILY SSF52172 2 162 6.26E-27 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 Pfam PF04397 LytTr DNA-binding domain 146 242 2.0E-33 T 28-03-2018 IPR007492 LytTR DNA-binding domain GO:0003677 AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 Gene3D G3DSA:2.20.25.10 206 243 6.3E-18 T 28-03-2018 AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 Gene3D G3DSA:3.40.50.2300 1 135 2.2E-24 T 28-03-2018 AM348_RS12170 cd4893b4ee289d90ab908585bcbcde95 244 Gene3D G3DSA:2.40.50.40 136 205 3.7E-18 T 28-03-2018 AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 SUPERFAMILY SSF52540 5 231 3.52E-61 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 SUPERFAMILY SSF52540 268 484 9.19E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 SMART SM00382 31 218 9.3E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 SMART SM00382 280 474 1.1E-6 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 Pfam PF00005 ABC transporter 273 425 2.6E-18 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 Pfam PF00005 ABC transporter 22 171 1.3E-31 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 Gene3D G3DSA:3.40.50.300 3 244 1.1E-56 T 28-03-2018 AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 Gene3D G3DSA:3.40.50.300 259 504 4.1E-34 T 28-03-2018 AM348_RS03340 fd046d8a828c0aa6c7bb52e1e90aedc8 507 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS09755 3e40f9afee611acf96bed50c5d835fb7 291 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 28-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM348_RS09755 3e40f9afee611acf96bed50c5d835fb7 291 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 280 1.8E-76 T 28-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM348_RS09755 3e40f9afee611acf96bed50c5d835fb7 291 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 285 20.287 T 28-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM348_RS09755 3e40f9afee611acf96bed50c5d835fb7 291 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 287 7.7E-108 T 28-03-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 SUPERFAMILY SSF55120 10 246 1.27E-86 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 SUPERFAMILY SSF88697 251 310 1.09E-13 T 28-03-2018 IPR015947 PUA-like domain AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 3.4E-18 T 28-03-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 Gene3D G3DSA:3.30.2350.10 10 231 6.5E-83 T 28-03-2018 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 247 3.9E-21 T 28-03-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 2.8E-58 T 28-03-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 4.4E-96 T 28-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 19.127 T 28-03-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS08135 958e4ceeed4b9ecde2bccf19476b4044 314 Gene3D G3DSA:2.30.130.10 250 313 3.4E-14 T 28-03-2018 IPR002478 PUA domain GO:0003723 AM348_RS06410 0fb023755874c5ca560cb45a32d02966 179 Pfam PF13302 Acetyltransferase (GNAT) domain 8 145 1.1E-26 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS06410 0fb023755874c5ca560cb45a32d02966 179 SUPERFAMILY SSF55729 2 171 4.01E-44 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS06410 0fb023755874c5ca560cb45a32d02966 179 Gene3D G3DSA:3.40.630.30 1 177 2.6E-37 T 28-03-2018 AM348_RS01350 da2633dd035d88a4f9b93fa8fcf1fde9 232 SMART SM00382 24 209 3.7E-20 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS01350 da2633dd035d88a4f9b93fa8fcf1fde9 232 SUPERFAMILY SSF52540 1 223 2.66E-65 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01350 da2633dd035d88a4f9b93fa8fcf1fde9 232 Pfam PF00005 ABC transporter 18 157 4.7E-36 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS01350 da2633dd035d88a4f9b93fa8fcf1fde9 232 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS01350 da2633dd035d88a4f9b93fa8fcf1fde9 232 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 214 7.9E-114 T 28-03-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 AM348_RS01350 da2633dd035d88a4f9b93fa8fcf1fde9 232 Gene3D G3DSA:3.40.50.300 11 229 1.3E-59 T 28-03-2018 AM348_RS09470 acc2f319a1e29fdaf2b4c6dc835a81a3 103 PIRSF PIRSF029143 1 103 1.2E-51 T 28-03-2018 IPR008314 Uncharacterised conserved protein UCP029143 AM348_RS09470 acc2f319a1e29fdaf2b4c6dc835a81a3 103 Pfam PF04266 ASCH domain 6 94 5.1E-16 T 28-03-2018 IPR007374 ASCH domain AM348_RS09470 acc2f319a1e29fdaf2b4c6dc835a81a3 103 SUPERFAMILY SSF88697 1 102 2.86E-34 T 28-03-2018 IPR015947 PUA-like domain AM348_RS09470 acc2f319a1e29fdaf2b4c6dc835a81a3 103 Gene3D G3DSA:2.30.130.30 1 103 1.9E-21 T 28-03-2018 AM348_RS09470 acc2f319a1e29fdaf2b4c6dc835a81a3 103 SMART SM01022 6 102 1.0E-27 T 28-03-2018 IPR007374 ASCH domain AM348_RS09470 acc2f319a1e29fdaf2b4c6dc835a81a3 103 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 2 103 31.726 T 28-03-2018 IPR008314 Uncharacterised conserved protein UCP029143 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 Pfam PF01202 Shikimate kinase 13 170 1.0E-56 T 28-03-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 PRINTS PR01100 Shikimate kinase family signature 59 67 3.5E-29 T 28-03-2018 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 PRINTS PR01100 Shikimate kinase family signature 98 115 3.5E-29 T 28-03-2018 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 PRINTS PR01100 Shikimate kinase family signature 7 22 3.5E-29 T 28-03-2018 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 PRINTS PR01100 Shikimate kinase family signature 31 44 3.5E-29 T 28-03-2018 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 PRINTS PR01100 Shikimate kinase family signature 77 86 3.5E-29 T 28-03-2018 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.419 T 28-03-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 Gene3D G3DSA:3.40.50.300 1 173 5.8E-37 T 28-03-2018 AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 SUPERFAMILY SSF52540 4 170 1.37E-34 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07080 d05217bcea5e9c58996c6271430ac0c1 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 28-03-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 AM348_RS14755 1bd925554743d90b62fbcf0343120bd0 408 Pfam PF04860 Phage portal protein 46 373 5.6E-94 T 28-03-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein AM348_RS14755 1bd925554743d90b62fbcf0343120bd0 408 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 36 379 2.9E-98 T 28-03-2018 IPR006427 Phage portal protein, HK97 AM348_RS15205 b1201af7b98eef4c11ca6fc3dbda6f0a 96 Pfam PF07130 YebG protein 1 74 3.0E-34 T 28-03-2018 IPR009813 Uncharacterised protein family YebG AM348_RS15205 b1201af7b98eef4c11ca6fc3dbda6f0a 96 Gene3D G3DSA:1.10.10.710 22 83 1.8E-26 T 28-03-2018 AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 SUPERFAMILY SSF56784 6 217 7.99E-46 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 Gene3D G3DSA:3.40.50.1000 32 206 1.6E-21 T 28-03-2018 IPR023214 HAD-like domain AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 3.9E-16 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 1.7E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 1.7E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 1.7E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 1.7E-5 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS07035 4e6bf66d3fd1344ca2e58fc181b897fb 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 189 9.2E-9 T 28-03-2018 IPR023214 HAD-like domain AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 124 195 1.3E-12 T 28-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 SMART SM00967 123 198 2.1E-9 T 28-03-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 Gene3D G3DSA:3.40.1280.10 194 359 3.1E-35 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 SUPERFAMILY SSF55315 117 193 6.71E-10 T 28-03-2018 IPR029064 50S ribosomal protein L30e-like AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 SUPERFAMILY SSF75217 199 357 3.6E-36 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 PIRSF PIRSF006280 1 359 1.5E-166 T 28-03-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 Gene3D G3DSA:3.30.1330.30 111 193 4.3E-9 T 28-03-2018 IPR029064 50S ribosomal protein L30e-like AM348_RS11210 6f69dd06c0de8aa5fb4c42dfa50984ff 359 Pfam PF00588 SpoU rRNA Methylase family 213 350 2.8E-28 T 28-03-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 535 26.754 T 28-03-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 Pfam PF14849 YidC periplasmic domain 61 343 2.7E-88 T 28-03-2018 IPR028053 Membrane insertase YidC, N-terminal AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 Pfam PF02096 60Kd inner membrane protein 354 533 1.3E-60 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 353 533 3.2E-69 T 28-03-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR01900 YidC translocation/secretion protein signature 339 355 1.0E-29 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR01900 YidC translocation/secretion protein signature 488 512 1.0E-29 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR01900 YidC translocation/secretion protein signature 468 483 1.0E-29 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 66 87 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 324 344 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 158 178 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 415 438 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 2 23 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 499 522 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 251 266 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 217 235 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 PRINTS PR00701 60kDa inner membrane protein signature 462 484 7.7E-110 T 28-03-2018 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 AM348_RS05365 196df43bef24e9d85840ccf2da826303 548 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 352 2.3E-116 T 28-03-2018 IPR028053 Membrane insertase YidC, N-terminal AM348_RS14895 4db0ecd50b57f401f2ebe8ebed5ddd3c 221 SUPERFAMILY SSF103642 200 220 5.07E-8 T 28-03-2018 AM348_RS14895 4db0ecd50b57f401f2ebe8ebed5ddd3c 221 Gene3D G3DSA:3.10.450.50 70 221 1.4E-14 T 28-03-2018 AM348_RS14895 4db0ecd50b57f401f2ebe8ebed5ddd3c 221 Pfam PF03695 Uncharacterised protein family (UPF0149) 12 183 1.6E-33 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS14895 4db0ecd50b57f401f2ebe8ebed5ddd3c 221 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 10 182 2.2E-49 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS14895 4db0ecd50b57f401f2ebe8ebed5ddd3c 221 SUPERFAMILY SSF101327 14 182 8.37E-22 T 28-03-2018 IPR011978 Uncharacterised protein family UPF0149 AM348_RS14895 4db0ecd50b57f401f2ebe8ebed5ddd3c 221 Pfam PF02810 SEC-C motif 203 220 1.3E-10 T 28-03-2018 IPR004027 SEC-C motif AM348_RS09145 09f836b4b06c5130693be22989becb22 236 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 170 9.0E-21 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS09145 09f836b4b06c5130693be22989becb22 236 SUPERFAMILY SSF53254 1 173 1.31E-23 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS09145 09f836b4b06c5130693be22989becb22 236 Gene3D G3DSA:3.40.50.1240 1 193 2.3E-26 T 28-03-2018 IPR029033 Histidine phosphatase superfamily AM348_RS09145 09f836b4b06c5130693be22989becb22 236 SMART SM00855 2 156 2.6E-7 T 28-03-2018 IPR013078 Histidine phosphatase superfamily, clade-1 AM348_RS09145 09f836b4b06c5130693be22989becb22 236 PIRSF PIRSF000709 140 174 52.0 T 28-03-2018 AM348_RS09145 09f836b4b06c5130693be22989becb22 236 PIRSF PIRSF000709 3 85 0.0018 T 28-03-2018 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 SUPERFAMILY SSF51905 4 181 3.28E-41 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 SUPERFAMILY SSF51905 283 358 3.28E-41 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 SUPERFAMILY SSF54373 180 283 1.06E-22 T 28-03-2018 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 2.9E-8 T 28-03-2018 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 309 2.9E-8 T 28-03-2018 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.9E-8 T 28-03-2018 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 Pfam PF01494 FAD binding domain 7 188 3.1E-9 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS01475 03c7170fcf5cbce77b0deea1b29732d0 428 Gene3D G3DSA:3.50.50.60 2 364 5.7E-41 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS12640 5cb0e439871bbf0bbf9f00be109acf79 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 1.1E-89 T 28-03-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12640 5cb0e439871bbf0bbf9f00be109acf79 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.898 T 28-03-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AM348_RS12640 5cb0e439871bbf0bbf9f00be109acf79 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 9.8E-148 T 28-03-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 AM348_RS00205 842cfe333e93b76fd09a2186a27b0a5b 187 Pfam PF01965 DJ-1/PfpI family 2 183 9.7E-53 T 28-03-2018 IPR002818 DJ-1/PfpI AM348_RS00205 842cfe333e93b76fd09a2186a27b0a5b 187 Gene3D G3DSA:3.40.50.880 1 187 2.1E-43 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS00205 842cfe333e93b76fd09a2186a27b0a5b 187 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 3 185 2.4E-54 T 28-03-2018 IPR006286 Peptidase C56, PfpI AM348_RS00205 842cfe333e93b76fd09a2186a27b0a5b 187 SUPERFAMILY SSF52317 1 186 3.44E-54 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 Pfam PF00072 Response regulator receiver domain 4 114 1.3E-26 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 Gene3D G3DSA:1.10.10.10 117 204 1.5E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 8.2E-19 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 SMART SM00448 1 113 1.1E-23 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 SUPERFAMILY SSF52172 1 124 7.68E-25 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 SUPERFAMILY SSF46894 136 202 2.35E-17 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 Gene3D G3DSA:3.40.50.2300 1 116 8.6E-23 T 28-03-2018 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 1.5E-9 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 1.5E-9 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 1.5E-9 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 SMART SM00421 141 198 1.1E-17 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS10885 0fc7bf766082405fced2f0d7abcef090 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS08425 cc79367202789bf7a3f54e6e8103bb8e 470 Pfam PF02614 Glucuronate isomerase 1 465 2.6E-230 T 28-03-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AM348_RS08425 cc79367202789bf7a3f54e6e8103bb8e 470 SUPERFAMILY SSF51556 3 465 3.23E-183 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS08425 cc79367202789bf7a3f54e6e8103bb8e 470 Gene3D G3DSA:3.20.20.140 90 467 9.6E-155 T 28-03-2018 AM348_RS08425 cc79367202789bf7a3f54e6e8103bb8e 470 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 50.102 T 28-03-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 AM348_RS08425 cc79367202789bf7a3f54e6e8103bb8e 470 Gene3D G3DSA:3.20.20.140 3 89 3.3E-28 T 28-03-2018 AM348_RS23095 cfbe05925ece072298e753c06d00983c 83 Gene3D G3DSA:1.10.1220.10 2 38 3.1E-5 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS17865 7509f09b80a6bad52597cd80e3dd8802 284 Gene3D G3DSA:1.20.1630.10 2 282 2.1E-42 T 28-03-2018 AM348_RS17865 7509f09b80a6bad52597cd80e3dd8802 284 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 274 1.1E-97 T 28-03-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 AM348_RS20595 d082fd964ae8e861baf1dc53f0d46323 180 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 178 38.97 T 28-03-2018 IPR009809 Cell division protein ZapC AM348_RS20595 d082fd964ae8e861baf1dc53f0d46323 180 Pfam PF07126 Cell-division protein ZapC 3 168 3.1E-66 T 28-03-2018 IPR009809 Cell division protein ZapC AM348_RS20595 d082fd964ae8e861baf1dc53f0d46323 180 PIRSF PIRSF010252 1 179 2.5E-63 T 28-03-2018 IPR009809 Cell division protein ZapC AM348_RS13395 32f802649b466cb33d63a4d22acdb207 189 Gene3D G3DSA:2.60.40.1090 28 187 3.8E-13 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS13395 32f802649b466cb33d63a4d22acdb207 189 SUPERFAMILY SSF49401 46 185 4.97E-6 T 28-03-2018 IPR008966 Adhesion domain AM348_RS13395 32f802649b466cb33d63a4d22acdb207 189 Pfam PF00419 Fimbrial protein 31 186 9.0E-7 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS20720 7af082bd686774309fcfcd46304fe427 60 Pfam PF03966 Trm112p-like protein 2 41 2.5E-8 T 28-03-2018 IPR005651 Uncharacterised protein family UPF0434/Trm112 AM348_RS20720 7af082bd686774309fcfcd46304fe427 60 SUPERFAMILY SSF158997 1 55 1.7E-19 T 28-03-2018 AM348_RS20720 7af082bd686774309fcfcd46304fe427 60 Gene3D G3DSA:2.20.25.10 8 60 1.3E-17 T 28-03-2018 AM348_RS20720 7af082bd686774309fcfcd46304fe427 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 25.612 T 28-03-2018 IPR005651 Uncharacterised protein family UPF0434/Trm112 AM348_RS07820 bd59f17a4cff36cbe512e24eaf0c5299 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.7E-46 T 28-03-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 AM348_RS07820 bd59f17a4cff36cbe512e24eaf0c5299 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 28-03-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 AM348_RS07820 bd59f17a4cff36cbe512e24eaf0c5299 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 34.029 T 28-03-2018 IPR023035 Ribosomal protein S9, bacterial/plastid AM348_RS07820 bd59f17a4cff36cbe512e24eaf0c5299 130 Gene3D G3DSA:3.30.230.10 3 130 3.5E-52 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS07820 bd59f17a4cff36cbe512e24eaf0c5299 130 SUPERFAMILY SSF54211 5 130 3.57E-49 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS21650 ff82cedfee06ec836d0a084eb346eeb3 262 Gene3D G3DSA:3.40.1010.10 4 129 3.0E-31 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS21650 ff82cedfee06ec836d0a084eb346eeb3 262 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 10 24 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS21650 ff82cedfee06ec836d0a084eb346eeb3 262 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 5 240 1.1E-92 T 28-03-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS21650 ff82cedfee06ec836d0a084eb346eeb3 262 Gene3D G3DSA:3.30.950.10 130 251 1.8E-34 T 28-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS21650 ff82cedfee06ec836d0a084eb346eeb3 262 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 216 2.7E-41 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS21650 ff82cedfee06ec836d0a084eb346eeb3 262 SUPERFAMILY SSF53790 4 247 2.88E-75 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS20140 cfcbd8ea60b50ed3cbf5a683e9155a20 302 Gene3D G3DSA:3.40.50.300 93 302 1.1E-21 T 28-03-2018 AM348_RS20140 cfcbd8ea60b50ed3cbf5a683e9155a20 302 Pfam PF02562 PhoH-like protein 97 301 3.2E-77 T 28-03-2018 IPR003714 PhoH-like protein GO:0005524 AM348_RS20140 cfcbd8ea60b50ed3cbf5a683e9155a20 302 SUPERFAMILY SSF52540 96 279 2.29E-31 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13025 dfc8104ab1d21b167cb23969fa1300d5 341 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 9 51 5.4E-6 T 28-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM348_RS13025 dfc8104ab1d21b167cb23969fa1300d5 341 SUPERFAMILY SSF161098 135 322 1.13E-17 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13025 dfc8104ab1d21b167cb23969fa1300d5 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 2.3E-27 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS13025 dfc8104ab1d21b167cb23969fa1300d5 341 Gene3D G3DSA:1.10.3720.10 10 328 4.9E-40 T 28-03-2018 AM348_RS00465 e3c60c1992068d7ae66fbae3654e9b36 255 Pfam PF00795 Carbon-nitrogen hydrolase 7 241 5.0E-29 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS00465 e3c60c1992068d7ae66fbae3654e9b36 255 SUPERFAMILY SSF56317 4 249 9.29E-61 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS00465 e3c60c1992068d7ae66fbae3654e9b36 255 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 137 157 - T 28-03-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site AM348_RS00465 e3c60c1992068d7ae66fbae3654e9b36 255 Gene3D G3DSA:3.60.110.10 2 253 1.6E-54 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS15830 7a685f806146c420de997c5db5ec630b 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 274 1.4E-20 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS15830 7a685f806146c420de997c5db5ec630b 291 SUPERFAMILY SSF161098 97 276 2.22E-27 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS15830 7a685f806146c420de997c5db5ec630b 291 Gene3D G3DSA:1.10.3720.10 38 291 5.1E-30 T 28-03-2018 AM348_RS15830 7a685f806146c420de997c5db5ec630b 291 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 83 277 4.6E-71 T 28-03-2018 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 AM348_RS18935 ea621d18bbcb7b2480e23d94a770c290 84 Pfam PF10729 Cell division activator CedA 6 81 2.7E-49 T 28-03-2018 IPR019666 Cell division activator CedA GO:0003677|GO:0051301 AM348_RS18935 ea621d18bbcb7b2480e23d94a770c290 84 Hamap MF_01580 Cell division activator CedA [cedA]. 5 84 33.719 T 28-03-2018 IPR019666 Cell division activator CedA GO:0003677|GO:0051301 AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 Gene3D G3DSA:3.20.20.140 1 259 5.1E-82 T 28-03-2018 AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 PIRSF PIRSF005902 1 260 1.6E-78 T 28-03-2018 IPR001130 TatD family GO:0016788 AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 123 133 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 189 205 - T 28-03-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 Pfam PF01026 TatD related DNase 2 256 1.3E-70 T 28-03-2018 IPR001130 TatD family GO:0016788 AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 SUPERFAMILY SSF51556 1 257 4.62E-86 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS04780 b900ce67a94e44f20e4ca8dad4faccc2 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 259 64.008 T 28-03-2018 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 Gene3D G3DSA:3.40.50.720 44 253 4.2E-58 T 28-03-2018 AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 Gene3D G3DSA:3.40.50.720 3 43 2.7E-6 T 28-03-2018 AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.7E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 2.7E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.7E-13 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 SUPERFAMILY SSF51735 9 252 2.13E-76 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 3.7E-137 T 28-03-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.12+1.1.1.127|MetaCyc: PWY-5515|MetaCyc: PWY-6507|MetaCyc: PWY-7562 AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.1E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.1E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.1E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.1E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.1E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS09665 0fac878eaee86eeba040820899e9117c 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 250 3.3E-56 T 28-03-2018 AM348_RS21415 a40ed82a44ede7e07935098de1506a78 331 Gene3D G3DSA:2.130.10.10 2 331 7.7E-57 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS21415 a40ed82a44ede7e07935098de1506a78 331 Pfam PF10282 Lactonase, 7-bladed beta-propeller 6 327 6.7E-89 T 28-03-2018 IPR019405 Lactonase, 7-bladed beta propeller AM348_RS21415 a40ed82a44ede7e07935098de1506a78 331 SUPERFAMILY SSF50974 5 87 2.22E-8 T 28-03-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 AM348_RS21415 a40ed82a44ede7e07935098de1506a78 331 SUPERFAMILY SSF50974 68 330 1.44E-53 T 28-03-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 AM348_RS21415 a40ed82a44ede7e07935098de1506a78 331 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 55.666 T 28-03-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 TIGRFAM TIGR00400 mgtE: magnesium transporter 55 477 7.2E-76 T 28-03-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Gene3D G3DSA:1.10.357.20 305 478 3.2E-33 T 28-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 SUPERFAMILY SSF54631 164 303 1.83E-26 T 28-03-2018 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Pfam PF03448 MgtE intracellular N domain 63 163 3.7E-24 T 28-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Pfam PF00571 CBS domain 165 220 0.0014 T 28-03-2018 IPR000644 CBS domain AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Pfam PF00571 CBS domain 229 283 5.0E-7 T 28-03-2018 IPR000644 CBS domain AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 SUPERFAMILY SSF161093 306 477 6.67E-48 T 28-03-2018 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 SMART SM00116 172 225 6.0 T 28-03-2018 IPR000644 CBS domain AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 SMART SM00116 236 284 2.1 T 28-03-2018 IPR000644 CBS domain AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Gene3D G3DSA:3.10.580.10 155 290 5.8E-17 T 28-03-2018 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 SUPERFAMILY SSF158791 51 161 2.35E-23 T 28-03-2018 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Pfam PF01769 Divalent cation transporter 349 470 1.8E-23 T 28-03-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 Gene3D G3DSA:1.25.60.10 36 154 1.9E-15 T 28-03-2018 AM348_RS12865 625095a2d852b9dce498bdd4ad80712f 478 SMART SM00924 62 165 1.5E-31 T 28-03-2018 IPR006668 Magnesium transporter, MgtE intracellular domain AM348_RS06715 8906e004d44b64574b36d0d1336e48d0 91 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 5.5E-26 T 28-03-2018 IPR009525 Protein of unknown function DUF1145 AM348_RS11320 38491486a7d16a596de4d36e3c7b4106 282 SUPERFAMILY SSF53697 103 279 6.36E-35 T 28-03-2018 AM348_RS11320 38491486a7d16a596de4d36e3c7b4106 282 Gene3D G3DSA:3.40.50.10490 84 275 8.9E-32 T 28-03-2018 AM348_RS11320 38491486a7d16a596de4d36e3c7b4106 282 Gene3D G3DSA:1.10.10.10 1 77 7.4E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11320 38491486a7d16a596de4d36e3c7b4106 282 SUPERFAMILY SSF46689 1 77 1.18E-19 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS11320 38491486a7d16a596de4d36e3c7b4106 282 Pfam PF01380 SIS domain 128 257 2.6E-30 T 28-03-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 AM348_RS11320 38491486a7d16a596de4d36e3c7b4106 282 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 5.2E-28 T 28-03-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 4 241 18.408 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 ProSitePatterns PS01218 TatC family signature. 154 173 - T 28-03-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 5.5E-51 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 5.5E-51 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 5.5E-51 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 5.5E-51 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 2.9E-80 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS04785 3f875920de47b71a36d8e1ac9f3d9ccc 263 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 1.4E-67 T 28-03-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 AM348_RS21810 f0d8e6550a504f25d9c9e7d7fcf1a3ce 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 234 1.6E-58 T 28-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AM348_RS21810 f0d8e6550a504f25d9c9e7d7fcf1a3ce 247 Gene3D G3DSA:3.40.1390.30 110 218 1.6E-31 T 28-03-2018 AM348_RS21810 f0d8e6550a504f25d9c9e7d7fcf1a3ce 247 SUPERFAMILY SSF102705 1 246 4.19E-85 T 28-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AM348_RS21810 f0d8e6550a504f25d9c9e7d7fcf1a3ce 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 2.4E-83 T 28-03-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 AM348_RS21810 f0d8e6550a504f25d9c9e7d7fcf1a3ce 247 Gene3D G3DSA:3.40.1390.30 1 109 1.5E-28 T 28-03-2018 AM348_RS11850 9edbad6a914ccc18071565d5ae1e5364 338 Pfam PF01515 Phosphate acetyl/butaryl transferase 2 320 2.5E-119 T 28-03-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS11850 9edbad6a914ccc18071565d5ae1e5364 338 Gene3D G3DSA:3.40.50.10750 140 296 1.3E-57 T 28-03-2018 AM348_RS11850 9edbad6a914ccc18071565d5ae1e5364 338 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 17 319 6.9E-100 T 28-03-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS11850 9edbad6a914ccc18071565d5ae1e5364 338 PIRSF PIRSF000428 1 327 1.6E-105 T 28-03-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 AM348_RS11850 9edbad6a914ccc18071565d5ae1e5364 338 SUPERFAMILY SSF53659 2 321 1.64E-80 T 28-03-2018 AM348_RS15230 6b9fd3d469672951107afa23e2bcfd6f 218 SUPERFAMILY SSF56317 4 195 6.21E-17 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS15230 6b9fd3d469672951107afa23e2bcfd6f 218 Pfam PF00795 Carbon-nitrogen hydrolase 5 102 1.0E-11 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS15230 6b9fd3d469672951107afa23e2bcfd6f 218 Gene3D G3DSA:3.60.110.10 1 128 5.6E-13 T 28-03-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 AM348_RS01680 e1270f23525461a36c82ad142bce3f5d 21 Hamap MF_01907 thr operon leader peptide [thrL]. 1 21 11.356 T 28-03-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 AM348_RS01680 e1270f23525461a36c82ad142bce3f5d 21 TIGRFAM TIGR02077 thr_lead_pep: thr operon leader peptide 1 21 3.3E-9 T 28-03-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 AM348_RS01680 e1270f23525461a36c82ad142bce3f5d 21 Pfam PF08254 Threonine leader peptide 1 21 1.9E-8 T 28-03-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 AM348_RS17665 15adae7a25546e1172591379f664aca1 252 Pfam PF13489 Methyltransferase domain 12 176 4.2E-15 T 28-03-2018 AM348_RS17665 15adae7a25546e1172591379f664aca1 252 SUPERFAMILY SSF53335 16 234 3.19E-33 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS17665 15adae7a25546e1172591379f664aca1 252 Gene3D G3DSA:1.10.150.290 178 230 2.1E-28 T 28-03-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS17665 15adae7a25546e1172591379f664aca1 252 Gene3D G3DSA:3.40.50.150 1 177 5.2E-30 T 28-03-2018 AM348_RS17665 15adae7a25546e1172591379f664aca1 252 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 251 45.073 T 28-03-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 AM348_RS18965 5439f834f6667301f3d31a307b61bc65 106 SUPERFAMILY SSF52794 4 102 3.14E-31 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS18965 5439f834f6667301f3d31a307b61bc65 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 94 1.2E-14 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS18965 5439f834f6667301f3d31a307b61bc65 106 TIGRFAM TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component 1 94 1.8E-33 T 28-03-2018 IPR013012 Phosphotransferase system, EIIB component, type 3 GO:0008982|GO:0009401 KEGG: 00230+2.7.1.20|MetaCyc: PWY-6619 AM348_RS18965 5439f834f6667301f3d31a307b61bc65 106 Gene3D G3DSA:3.40.50.2300 5 106 1.9E-28 T 28-03-2018 AM348_RS17355 8e9a98fbeb188648e0d62301ced86c22 126 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 5 95 1.7E-10 T 28-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AM348_RS17355 8e9a98fbeb188648e0d62301ced86c22 126 Gene3D G3DSA:3.90.1590.10 1 121 3.3E-14 T 28-03-2018 AM348_RS17355 8e9a98fbeb188648e0d62301ced86c22 126 SUPERFAMILY SSF51316 2 111 3.14E-18 T 28-03-2018 IPR011057 Mss4-like AM348_RS22160 5638b8673f9ec2d5582cb55489617cf7 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 18.99 T 28-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM348_RS22160 5638b8673f9ec2d5582cb55489617cf7 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 3.6E-24 T 28-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM348_RS22160 5638b8673f9ec2d5582cb55489617cf7 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 8.2E-43 T 28-03-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 AM348_RS01875 b751e4c70bff348ad2e2837019fae40b 358 Pfam PF00990 Diguanylate cyclase, GGDEF domain 190 344 3.5E-48 T 28-03-2018 IPR000160 GGDEF domain AM348_RS01875 b751e4c70bff348ad2e2837019fae40b 358 SMART SM00267 178 348 7.5E-57 T 28-03-2018 IPR000160 GGDEF domain AM348_RS01875 b751e4c70bff348ad2e2837019fae40b 358 SUPERFAMILY SSF55073 194 347 3.37E-45 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS01875 b751e4c70bff348ad2e2837019fae40b 358 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 187 348 5.9E-47 T 28-03-2018 IPR000160 GGDEF domain AM348_RS01875 b751e4c70bff348ad2e2837019fae40b 358 Gene3D G3DSA:3.30.70.270 172 349 2.9E-51 T 28-03-2018 AM348_RS05955 a7333732f43a5e6c25977c5d82128d59 311 SUPERFAMILY SSF88713 25 239 2.96E-73 T 28-03-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 AM348_RS05955 a7333732f43a5e6c25977c5d82128d59 311 Pfam PF04748 Divergent polysaccharide deacetylase 29 239 1.5E-76 T 28-03-2018 IPR006837 Divergent polysaccharide deacetylase AM348_RS05955 a7333732f43a5e6c25977c5d82128d59 311 Gene3D G3DSA:3.20.20.370 18 242 4.2E-81 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 Gene3D G3DSA:3.50.50.60 2 101 5.7E-8 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 Gene3D G3DSA:3.50.50.60 239 346 6.9E-7 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 275 2.8E-20 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 2.8E-20 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.8E-20 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 2.8E-20 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.8E-20 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 278 1.0E-51 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 Gene3D G3DSA:3.50.50.60 102 237 9.1E-27 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 SUPERFAMILY SSF51905 3 301 1.84E-35 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 275 7.4E-14 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 7.4E-14 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 7.4E-14 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 7.4E-14 T 28-03-2018 AM348_RS10430 b3aa208d82db7085fe3256dbe538494f 377 Hamap MF_01313 Nitric oxide reductase FlRd-NAD(+) reductase [norW]. 1 377 56.647 T 28-03-2018 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase GO:0016731|GO:0055114 AM348_RS07485 dfd3ab38ac541293b7ee44a04bfa996a 72 Pfam PF03889 Domain of unknown function 9 45 3.9E-22 T 28-03-2018 IPR005589 Protein of unknown function DUF331 AM348_RS16980 60eb37e1104750b121a8b67dd15af5f9 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 82 4.8E-20 T 28-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AM348_RS12230 c27fa83a2d993380fa1acaea4746840c 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 5.9E-60 T 28-03-2018 IPR018636 Protein of unknown function DUF2058 AM348_RS03940 f5a3247fac7472d30bb4d1c0b69ef27c 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.0E-18 T 28-03-2018 IPR010035 ThiS, thiamine-biosynthesis AM348_RS03940 f5a3247fac7472d30bb4d1c0b69ef27c 66 Pfam PF02597 ThiS family 3 66 4.6E-14 T 28-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 AM348_RS03940 f5a3247fac7472d30bb4d1c0b69ef27c 66 SUPERFAMILY SSF54285 1 66 6.98E-17 T 28-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AM348_RS03940 f5a3247fac7472d30bb4d1c0b69ef27c 66 Gene3D G3DSA:3.10.20.30 1 66 2.8E-20 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS06615 6b1f2e18285d3d9df2be20c68cc24531 201 SUPERFAMILY SSF89392 20 187 1.02E-23 T 28-03-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX AM348_RS06615 6b1f2e18285d3d9df2be20c68cc24531 201 Gene3D G3DSA:2.50.20.10 18 194 3.2E-18 T 28-03-2018 AM348_RS06615 6b1f2e18285d3d9df2be20c68cc24531 201 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 34 187 5.8E-11 T 28-03-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like AM348_RS12505 6bd970e0215949852fb14684e7b5f9d2 120 SMART SM00905 8 118 6.6E-32 T 28-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS12505 6bd970e0215949852fb14684e7b5f9d2 120 Pfam PF02152 Dihydroneopterin aldolase 8 116 9.2E-25 T 28-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS12505 6bd970e0215949852fb14684e7b5f9d2 120 Gene3D G3DSA:3.30.1130.10 1 120 7.2E-30 T 28-03-2018 AM348_RS12505 6bd970e0215949852fb14684e7b5f9d2 120 SUPERFAMILY SSF55620 7 120 1.39E-30 T 28-03-2018 AM348_RS12505 6bd970e0215949852fb14684e7b5f9d2 120 TIGRFAM TIGR00526 folB_dom: FolB domain 7 120 5.7E-38 T 28-03-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 AM348_RS05415 0ecdcd57f312c985c23c1cd539671e79 331 Gene3D G3DSA:2.40.160.20 66 324 9.1E-6 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS19670 1c1561f1f603a5d410b59985cd200575 317 Pfam PF16344 Domain of unknown function (DUF4974) 219 305 2.8E-8 T 28-03-2018 IPR032508 Protein FecR, C-terminal AM348_RS19670 1c1561f1f603a5d410b59985cd200575 317 PIRSF PIRSF018266 4 316 1.9E-88 T 28-03-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component AM348_RS19670 1c1561f1f603a5d410b59985cd200575 317 Pfam PF16220 Domain of unknown function (DUF4880) 15 56 1.3E-9 T 28-03-2018 IPR032623 FecR, N-terminal AM348_RS19670 1c1561f1f603a5d410b59985cd200575 317 Pfam PF04773 FecR protein 110 202 3.3E-17 T 28-03-2018 IPR006860 FecR protein AM348_RS05560 66a96cf3b3ad48e1c56fd1f5cd35eb11 463 SUPERFAMILY SSF103473 20 451 1.7E-58 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS05560 66a96cf3b3ad48e1c56fd1f5cd35eb11 463 Gene3D G3DSA:1.20.1250.20 22 228 9.9E-24 T 28-03-2018 AM348_RS05560 66a96cf3b3ad48e1c56fd1f5cd35eb11 463 Pfam PF07690 Major Facilitator Superfamily 35 397 1.2E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS05560 66a96cf3b3ad48e1c56fd1f5cd35eb11 463 Gene3D G3DSA:1.20.1250.20 246 462 4.3E-19 T 28-03-2018 AM348_RS05560 66a96cf3b3ad48e1c56fd1f5cd35eb11 463 PIRSF PIRSF002808 11 461 1.1E-101 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS05560 66a96cf3b3ad48e1c56fd1f5cd35eb11 463 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 426 7.3E-147 T 28-03-2018 AM348_RS03945 4ee2b6b4cffdbbbc2d5dc683c0ddeff1 256 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 42.109 T 28-03-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AM348_RS03945 4ee2b6b4cffdbbbc2d5dc683c0ddeff1 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 247 7.9E-108 T 28-03-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 AM348_RS03945 4ee2b6b4cffdbbbc2d5dc683c0ddeff1 256 SUPERFAMILY SSF110399 1 233 2.22E-80 T 28-03-2018 AM348_RS03945 4ee2b6b4cffdbbbc2d5dc683c0ddeff1 256 Gene3D G3DSA:3.20.20.70 1 256 1.3E-52 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS06620 58b8ee69c11fdb7a9ebf636dd8af1797 140 Pfam PF13279 Thioesterase-like superfamily 17 127 3.0E-13 T 28-03-2018 AM348_RS06620 58b8ee69c11fdb7a9ebf636dd8af1797 140 PIRSF PIRSF003230 3 136 3.6E-21 T 28-03-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 AM348_RS06620 58b8ee69c11fdb7a9ebf636dd8af1797 140 Gene3D G3DSA:3.10.129.10 2 134 8.4E-28 T 28-03-2018 AM348_RS06620 58b8ee69c11fdb7a9ebf636dd8af1797 140 SUPERFAMILY SSF54637 7 131 1.08E-35 T 28-03-2018 IPR029069 HotDog domain AM348_RS17765 8194e11debfc4f4661f88bb4535115d6 524 Gene3D G3DSA:1.25.40.70 21 162 6.2E-5 T 28-03-2018 AM348_RS17765 8194e11debfc4f4661f88bb4535115d6 524 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 230 521 8.2E-129 T 28-03-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type AM348_RS17765 8194e11debfc4f4661f88bb4535115d6 524 Gene3D G3DSA:1.10.3470.10 163 512 1.8E-52 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS17765 8194e11debfc4f4661f88bb4535115d6 524 Pfam PF02653 Branched-chain amino acid transport system / permease component 232 507 7.6E-51 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS17765 8194e11debfc4f4661f88bb4535115d6 524 SUPERFAMILY SSF48371 112 220 9.0E-11 T 28-03-2018 IPR016024 Armadillo-type fold GO:0005488 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 Pfam PF01494 FAD binding domain 4 345 5.1E-31 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 391 2.7E-134 T 28-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 8.2E-20 T 28-03-2018 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 8.2E-20 T 28-03-2018 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.2E-20 T 28-03-2018 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 8.2E-20 T 28-03-2018 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 Gene3D G3DSA:3.50.50.60 1 365 1.3E-47 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 28-03-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 SUPERFAMILY SSF51905 4 177 5.05E-60 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS09430 d68eb4071d29241bf92f3b697bf9a212 400 SUPERFAMILY SSF51905 268 385 5.05E-60 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02405 4332ca0cbc3563bf0c5f946bbdc45621 252 PIRSF PIRSF020736 1 252 1.3E-90 T 28-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AM348_RS02405 4332ca0cbc3563bf0c5f946bbdc45621 252 Gene3D G3DSA:1.20.1260.10 3 252 9.8E-71 T 28-03-2018 IPR012347 Ferritin-related AM348_RS02405 4332ca0cbc3563bf0c5f946bbdc45621 252 SUPERFAMILY SSF47240 105 251 2.61E-72 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS02405 4332ca0cbc3563bf0c5f946bbdc45621 252 SUPERFAMILY SSF47240 7 57 2.61E-72 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS02405 4332ca0cbc3563bf0c5f946bbdc45621 252 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 5 248 1.2E-119 T 28-03-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 AM348_RS22525 9ee50443f10926c29c075bd2580ec9cd 413 Gene3D G3DSA:1.20.1250.20 207 413 2.4E-20 T 28-03-2018 AM348_RS22525 9ee50443f10926c29c075bd2580ec9cd 413 Gene3D G3DSA:1.20.1250.20 12 202 2.5E-12 T 28-03-2018 AM348_RS22525 9ee50443f10926c29c075bd2580ec9cd 413 SUPERFAMILY SSF103473 17 409 1.83E-35 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS22525 9ee50443f10926c29c075bd2580ec9cd 413 Pfam PF03825 Nucleoside H+ symporter 21 409 3.9E-99 T 28-03-2018 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 PRINTS PR00175 Sodium/alanine symporter signature 178 196 2.8E-49 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 PRINTS PR00175 Sodium/alanine symporter signature 87 109 2.8E-49 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 PRINTS PR00175 Sodium/alanine symporter signature 410 430 2.8E-49 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 PRINTS PR00175 Sodium/alanine symporter signature 206 225 2.8E-49 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 PRINTS PR00175 Sodium/alanine symporter signature 303 321 2.8E-49 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 PRINTS PR00175 Sodium/alanine symporter signature 349 371 2.8E-49 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 Pfam PF01235 Sodium:alanine symporter family 53 452 7.2E-140 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01655 8c84bce95645ccb3c1e97b5a7742dfc2 476 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 4.3E-154 T 28-03-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 AM348_RS01110 fda8ab39cbe00e3c91ad920146ca64b7 316 SUPERFAMILY SSF75005 5 311 4.38E-68 T 28-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM348_RS01110 fda8ab39cbe00e3c91ad920146ca64b7 316 PIRSF PIRSF025414 1 316 6.0E-142 T 28-03-2018 IPR016828 Alpha-L-arabinofuranosidase KEGG: 00520+3.2.1.55 AM348_RS01110 fda8ab39cbe00e3c91ad920146ca64b7 316 Gene3D G3DSA:2.115.10.20 1 316 2.5E-61 T 28-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM348_RS01110 fda8ab39cbe00e3c91ad920146ca64b7 316 Pfam PF04616 Glycosyl hydrolases family 43 5 306 5.1E-77 T 28-03-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.2E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.2E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.2E-5 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 Gene3D G3DSA:3.40.190.10 178 264 1.4E-20 T 28-03-2018 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 SUPERFAMILY SSF46785 2 109 4.24E-18 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 Gene3D G3DSA:3.40.190.10 88 177 4.7E-24 T 28-03-2018 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 Pfam PF03466 LysR substrate binding domain 86 286 2.2E-51 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 Gene3D G3DSA:1.10.10.10 1 84 1.3E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 SUPERFAMILY SSF53850 88 285 9.05E-48 T 28-03-2018 AM348_RS13165 987364a68a0f4d8d74f0b79a75415344 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.1E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS22170 db0d3e1a31ab6690313c48f31263ef30 187 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 38 184 7.2E-66 T 28-03-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 AM348_RS22170 db0d3e1a31ab6690313c48f31263ef30 187 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 34 175 1.0E-74 T 28-03-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 AM348_RS22170 db0d3e1a31ab6690313c48f31263ef30 187 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 4 187 42.649 T 28-03-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 AM348_RS22170 db0d3e1a31ab6690313c48f31263ef30 187 Gene3D G3DSA:2.40.160.20 30 187 3.1E-65 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS22170 db0d3e1a31ab6690313c48f31263ef30 187 SUPERFAMILY SSF56925 28 187 4.08E-80 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 Pfam PF07219 HemY protein N-terminus 26 132 1.1E-36 T 28-03-2018 IPR010817 HemY, N-terminal AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 Gene3D G3DSA:1.25.40.10 250 397 4.0E-11 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 Pfam PF07719 Tetratricopeptide repeat 329 360 1.7E-5 T 28-03-2018 IPR013105 Tetratricopeptide repeat 2 AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 4 386 2.7E-118 T 28-03-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 Gene3D G3DSA:1.25.40.10 77 220 1.1E-10 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 SUPERFAMILY SSF48452 269 385 7.34E-12 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS04950 2fbfa88a4359efd07cde512177d18072 399 SUPERFAMILY SSF48452 95 226 7.34E-12 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS14120 70328585e65bdec13de6f2bb8a6a0412 241 SUPERFAMILY SSF53790 1 239 8.24E-57 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14120 70328585e65bdec13de6f2bb8a6a0412 241 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 2 239 1.4E-107 T 28-03-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 AM348_RS14120 70328585e65bdec13de6f2bb8a6a0412 241 Gene3D G3DSA:3.30.950.10 121 238 2.8E-52 T 28-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14120 70328585e65bdec13de6f2bb8a6a0412 241 Gene3D G3DSA:3.40.1010.10 1 120 5.1E-34 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14120 70328585e65bdec13de6f2bb8a6a0412 241 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 208 9.0E-39 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS03220 ec4bcfd784a37f5366c8e7ccad2ccc95 297 Pfam PF13990 YjcZ-like protein 21 290 1.8E-123 T 28-03-2018 IPR025599 YjcZ-like protein AM348_RS10730 ce16d1892fd4be9b8bd6bcbc1ef30ae2 504 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 1.5E-143 T 28-03-2018 IPR002823 Protein of unknown function DUF112, transmembrane AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 Pfam PF01739 CheR methyltransferase, SAM binding domain 92 280 2.0E-58 T 28-03-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 Gene3D G3DSA:3.40.50.150 91 284 2.3E-46 T 28-03-2018 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 SUPERFAMILY SSF53335 92 281 1.64E-59 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PRINTS PR00996 Glutamate methyltransferase family signature 224 238 8.8E-47 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PRINTS PR00996 Glutamate methyltransferase family signature 85 97 8.8E-47 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PRINTS PR00996 Glutamate methyltransferase family signature 46 59 8.8E-47 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PRINTS PR00996 Glutamate methyltransferase family signature 243 266 8.8E-47 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 8.8E-47 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PRINTS PR00996 Glutamate methyltransferase family signature 152 168 8.8E-47 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 Gene3D G3DSA:1.10.155.10 16 90 1.5E-26 T 28-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 PIRSF PIRSF000410 9 285 1.2E-100 T 28-03-2018 IPR026024 Chemotaxis protein methyltransferase CheR AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 SMART SM00138 24 284 3.3E-123 T 28-03-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 SUPERFAMILY SSF47757 14 91 1.11E-24 T 28-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM348_RS15030 c9039758ddd00c0108728ec162ea0392 290 Pfam PF03705 CheR methyltransferase, all-alpha domain 26 76 4.9E-18 T 28-03-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal AM348_RS06060 e7ff0f8fa97d7a5c4a6bacd7bb06e794 120 PIRSF PIRSF028770 1 120 5.9E-62 T 28-03-2018 IPR011223 Uncharacterised conserved protein UCP028770 AM348_RS06060 e7ff0f8fa97d7a5c4a6bacd7bb06e794 120 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 2.4E-40 T 28-03-2018 IPR011223 Uncharacterised conserved protein UCP028770 AM348_RS06110 93a48ca2132a4b42317d26f55b53f817 246 SUPERFAMILY SSF103515 107 219 2.48E-5 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS06110 93a48ca2132a4b42317d26f55b53f817 246 Gene3D G3DSA:2.40.160.20 6 246 3.7E-11 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS06110 93a48ca2132a4b42317d26f55b53f817 246 Pfam PF06629 MltA-interacting protein MipA 26 246 9.0E-51 T 28-03-2018 IPR010583 MltA-interacting MipA AM348_RS03100 85197d30bbfc655a135f3149cb387c2f 573 Pfam PF00916 Sulfate permease family 24 385 2.5E-81 T 28-03-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 AM348_RS03100 85197d30bbfc655a135f3149cb387c2f 573 Gene3D G3DSA:3.30.750.24 440 567 5.0E-16 T 28-03-2018 IPR002645 STAS domain AM348_RS03100 85197d30bbfc655a135f3149cb387c2f 573 SUPERFAMILY SSF52091 445 536 1.92E-9 T 28-03-2018 IPR002645 STAS domain AM348_RS03100 85197d30bbfc655a135f3149cb387c2f 573 Pfam PF01740 STAS domain 445 532 2.3E-11 T 28-03-2018 IPR002645 STAS domain AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 Gene3D G3DSA:3.40.47.10 5 260 3.3E-56 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 SUPERFAMILY SSF53901 215 409 5.57E-60 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 364 2.6E-29 T 28-03-2018 IPR014031 Beta-ketoacyl synthase, C-terminal AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 247 4.3E-43 T 28-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 28-03-2018 IPR018201 Beta-ketoacyl synthase, active site AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 SMART SM00825 Beta-ketoacyl synthase 5 408 4.9E-12 T 28-03-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 Gene3D G3DSA:3.40.47.10 261 408 1.2E-36 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06585 68bff0b6f08cb2eb3e4d33c8d3b1861f 409 SUPERFAMILY SSF53901 3 252 5.15E-56 T 28-03-2018 IPR016039 Thiolase-like GO:0003824|GO:0008152 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 Gene3D G3DSA:3.40.50.2300 63 172 4.4E-27 T 28-03-2018 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 SUPERFAMILY SSF53822 63 316 6.48E-61 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 SMART SM00354 5 75 2.0E-26 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 Gene3D G3DSA:3.40.50.2300 173 331 1.1E-36 T 28-03-2018 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 Gene3D G3DSA:1.10.260.40 7 62 5.5E-14 T 28-03-2018 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 SUPERFAMILY SSF47413 5 62 5.63E-13 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 6.0E-18 T 28-03-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 28-03-2018 AM348_RS06855 0e1cbca4be128a3e5be6462ae5b99e03 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 309 7.3E-30 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS17480 0dd773caf2790c8cfc51832606426eba 340 SUPERFAMILY SSF161098 199 319 3.92E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17480 0dd773caf2790c8cfc51832606426eba 340 SUPERFAMILY SSF161098 96 161 3.92E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17480 0dd773caf2790c8cfc51832606426eba 340 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 334 9.9E-45 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17480 0dd773caf2790c8cfc51832606426eba 340 Gene3D G3DSA:1.10.3720.10 3 324 7.2E-41 T 28-03-2018 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 Gene3D G3DSA:3.30.70.20 5 198 1.6E-28 T 28-03-2018 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 Gene3D G3DSA:3.30.70.20 199 237 1.6E-19 T 28-03-2018 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 493 0.0 T 28-03-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 359 437 2.6E-30 T 28-03-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 Pfam PF13247 4Fe-4S dicluster domain 176 272 2.5E-37 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS15880 4443e713482b3906df79ab45617c259d 512 Gene3D G3DSA:3.30.70.20 238 365 7.1E-31 T 28-03-2018 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 Gene3D G3DSA:3.30.70.20 366 467 1.0E-30 T 28-03-2018 AM348_RS15880 4443e713482b3906df79ab45617c259d 512 SUPERFAMILY SSF54862 1 505 4.29E-184 T 28-03-2018 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 Gene3D G3DSA:2.60.40.10 19 142 1.3E-32 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 SUPERFAMILY SSF49584 136 221 1.57E-14 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 PRINTS PR00969 Pili chaperone signature 97 114 1.2E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 PRINTS PR00969 Pili chaperone signature 158 173 1.2E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 PRINTS PR00969 Pili chaperone signature 123 138 1.2E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 PRINTS PR00969 Pili chaperone signature 20 29 1.2E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 PRINTS PR00969 Pili chaperone signature 69 90 1.2E-26 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 Gene3D G3DSA:2.60.40.10 144 225 3.1E-13 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 19 141 5.1E-39 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 163 219 2.1E-8 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 96 113 - T 28-03-2018 IPR018046 Pili assembly chaperone, conserved site AM348_RS13400 1d75d3c720d113587fdc01d8bdfa2401 227 SUPERFAMILY SSF49354 14 141 2.88E-38 T 28-03-2018 IPR008962 PapD-like AM348_RS10870 4165361f0bd39ee508073dc54db0f5c1 428 PIRSF PIRSF002808 7 423 4.1E-40 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS10870 4165361f0bd39ee508073dc54db0f5c1 428 Gene3D G3DSA:1.20.1250.20 223 421 2.9E-29 T 28-03-2018 AM348_RS10870 4165361f0bd39ee508073dc54db0f5c1 428 Pfam PF07690 Major Facilitator Superfamily 25 379 6.5E-66 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS10870 4165361f0bd39ee508073dc54db0f5c1 428 SUPERFAMILY SSF103473 11 416 1.7E-89 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS10870 4165361f0bd39ee508073dc54db0f5c1 428 Gene3D G3DSA:1.20.1250.20 11 213 5.6E-45 T 28-03-2018 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 SUPERFAMILY SSF56425 236 356 4.64E-42 T 28-03-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 28-03-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 Pfam PF00890 FAD binding domain 9 405 2.4E-117 T 28-03-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 PIRSF PIRSF000171 1 579 1.1E-46 T 28-03-2018 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 7.4E-5 T 28-03-2018 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.4E-5 T 28-03-2018 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 SUPERFAMILY SSF46977 452 588 1.44E-46 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 Gene3D G3DSA:4.10.80.40 541 588 4.4E-12 T 28-03-2018 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 Gene3D G3DSA:1.20.58.100 431 540 9.3E-37 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 1.2E-275 T 28-03-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 2.0E-36 T 28-03-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 Gene3D G3DSA:3.50.50.60 3 294 1.5E-47 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 Gene3D G3DSA:3.50.50.60 302 430 2.5E-17 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 SUPERFAMILY SSF51905 4 259 2.19E-73 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 SUPERFAMILY SSF51905 359 429 2.19E-73 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS21725 9863b85dbded3425da17f59fa1bc2d34 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 1.7E-240 T 28-03-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 AM348_RS06780 949ca1dbbdf27854e3ee5096528742c7 237 SMART SM00382 30 216 5.8E-4 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS06780 949ca1dbbdf27854e3ee5096528742c7 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS06780 949ca1dbbdf27854e3ee5096528742c7 237 SUPERFAMILY SSF52540 5 234 7.61E-61 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS06780 949ca1dbbdf27854e3ee5096528742c7 237 PIRSF PIRSF039137 1 237 3.2E-104 T 28-03-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 AM348_RS06780 949ca1dbbdf27854e3ee5096528742c7 237 Pfam PF00005 ABC transporter 21 165 1.4E-33 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS06780 949ca1dbbdf27854e3ee5096528742c7 237 Gene3D G3DSA:3.40.50.300 1 237 2.9E-59 T 28-03-2018 AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 SUPERFAMILY SSF47413 3 66 2.9E-12 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 Gene3D G3DSA:2.10.109.10 98 227 1.7E-20 T 28-03-2018 AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 Gene3D G3DSA:1.10.260.40 1 71 7.5E-15 T 28-03-2018 AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 SUPERFAMILY SSF51306 90 223 1.57E-20 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 Pfam PF00717 Peptidase S24-like 141 203 6.8E-12 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 SMART SM00530 9 63 1.6E-8 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS16080 07c31ea09c43dffa5c8b4d09e98734ae 232 Pfam PF01381 Helix-turn-helix 12 63 1.9E-6 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS01605 3e19a680554b7e4b2440bca0f6782028 297 Gene3D G3DSA:1.10.10.10 1 86 7.8E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01605 3e19a680554b7e4b2440bca0f6782028 297 SUPERFAMILY SSF46785 2 85 2.23E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01605 3e19a680554b7e4b2440bca0f6782028 297 Pfam PF03466 LysR substrate binding domain 96 285 2.5E-11 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS01605 3e19a680554b7e4b2440bca0f6782028 297 Gene3D G3DSA:3.40.190.10 93 222 6.9E-5 T 28-03-2018 AM348_RS01605 3e19a680554b7e4b2440bca0f6782028 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.2E-15 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS01605 3e19a680554b7e4b2440bca0f6782028 297 SUPERFAMILY SSF53850 90 287 1.16E-25 T 28-03-2018 AM348_RS05335 94ca8fe3d57a69f90b0883e89f29427e 445 Pfam PF00860 Permease family 31 404 2.4E-44 T 28-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS05335 94ca8fe3d57a69f90b0883e89f29427e 445 PIRSF PIRSF005353 5 444 8.6E-177 T 28-03-2018 IPR026033 Purine permease PbuG-like AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 5 24 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 140 162 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 163 190 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 191 207 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 102 121 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 60 82 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 83 101 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 208 233 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 PRINTS PR01003 Flagellar assembly protein FliH signature 122 139 1.3E-114 T 28-03-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 AM348_RS14430 1694ef722d75540e94f7b6dc6e2d4cdd 235 Pfam PF02108 Flagellar assembly protein FliH 103 226 7.8E-41 T 28-03-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE AM348_RS01040 ef744078c667120698f1fbba3db1ed28 423 Pfam PF07005 Putative sugar-binding N-terminal domain 3 225 7.3E-62 T 28-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM348_RS01040 ef744078c667120698f1fbba3db1ed28 423 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 240 409 6.2E-40 T 28-03-2018 IPR031475 Putative nucleotide-binding C-terminal domain AM348_RS01040 ef744078c667120698f1fbba3db1ed28 423 Gene3D G3DSA:3.40.50.10840 3 233 2.9E-67 T 28-03-2018 IPR010737 Putative sugar-binding, N-terminal domain AM348_RS01040 ef744078c667120698f1fbba3db1ed28 423 SUPERFAMILY SSF142764 4 416 4.05E-100 T 28-03-2018 AM348_RS17190 5cc5143215afb228f7639b025f7f20bd 172 Pfam PF13420 Acetyltransferase (GNAT) domain 3 154 1.7E-18 T 28-03-2018 AM348_RS17190 5cc5143215afb228f7639b025f7f20bd 172 SUPERFAMILY SSF55729 3 165 5.32E-33 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS17190 5cc5143215afb228f7639b025f7f20bd 172 Gene3D G3DSA:3.40.630.30 1 169 1.5E-33 T 28-03-2018 AM348_RS18260 86c770f093c9d8f7519c58b48c3389c5 389 SUPERFAMILY SSF103473 6 380 8.76E-53 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18260 86c770f093c9d8f7519c58b48c3389c5 389 Gene3D G3DSA:1.20.1250.20 189 388 4.8E-17 T 28-03-2018 AM348_RS18260 86c770f093c9d8f7519c58b48c3389c5 389 Gene3D G3DSA:1.20.1250.20 3 188 6.4E-25 T 28-03-2018 AM348_RS18260 86c770f093c9d8f7519c58b48c3389c5 389 Pfam PF07690 Major Facilitator Superfamily 10 341 2.8E-32 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 9.2E-25 T 28-03-2018 IPR020603 MraZ domain AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 135 7.4E-20 T 28-03-2018 IPR020603 MraZ domain AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 SUPERFAMILY SSF89447 1 136 1.15E-45 T 28-03-2018 AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 8.5E-66 T 28-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 57.808 T 28-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 Gene3D G3DSA:2.10.260.10 81 127 3.5E-4 T 28-03-2018 AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 Gene3D G3DSA:2.10.260.10 4 32 0.04 T 28-03-2018 AM348_RS01255 1ccba829760ceef8f025dbf45a1a050a 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 139 1.0E-75 T 28-03-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 AM348_RS01330 a34c74186605cc7693e31ad86cd422c0 42 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 3 40 2.5E-10 T 28-03-2018 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 SUPERFAMILY SSF53756 5 476 1.67E-115 T 28-03-2018 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 Pfam PF08323 Starch synthase catalytic domain 2 233 2.2E-71 T 28-03-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 Gene3D G3DSA:3.40.50.2000 262 472 3.5E-31 T 28-03-2018 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 46.65 T 28-03-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 Pfam PF00534 Glycosyl transferases group 1 287 438 1.1E-12 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 475 3.0E-174 T 28-03-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 AM348_RS06910 9ca7187543c44aff19506e15b974f777 477 Gene3D G3DSA:3.40.50.2000 17 261 1.4E-11 T 28-03-2018 AM348_RS12065 94011ccba42379177b1784d3bee42876 277 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 27 272 3.9E-106 T 28-03-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AM348_RS12065 94011ccba42379177b1784d3bee42876 277 SUPERFAMILY SSF53167 10 276 1.67E-83 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS12065 94011ccba42379177b1784d3bee42876 277 Gene3D G3DSA:3.40.50.1580 11 276 2.0E-56 T 28-03-2018 AM348_RS12065 94011ccba42379177b1784d3bee42876 277 PIRSF PIRSF000477 1 276 1.1E-112 T 28-03-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 AM348_RS12065 94011ccba42379177b1784d3bee42876 277 Pfam PF01048 Phosphorylase superfamily 27 273 1.7E-42 T 28-03-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 AM348_RS12065 94011ccba42379177b1784d3bee42876 277 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 27 274 9.1E-155 T 28-03-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 Pfam PF13343 Bacterial extracellular solute-binding protein 73 299 8.0E-19 T 28-03-2018 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 18 321 1.5E-151 T 28-03-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030288|GO:0030975 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 Gene3D G3DSA:3.40.190.10 16 135 3.4E-4 T 28-03-2018 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 119 136 - T 28-03-2018 IPR006061 Solute-binding family 1, conserved site GO:0006810 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 6 327 2.0E-183 T 28-03-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 SUPERFAMILY SSF53850 22 323 1.27E-64 T 28-03-2018 AM348_RS01340 a946c3d0f3260296fe38b0a6bb8e830d 327 Gene3D G3DSA:3.40.190.10 136 275 8.1E-32 T 28-03-2018 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 28-03-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 387 5.3E-134 T 28-03-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 8.4E-14 T 28-03-2018 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 8.4E-14 T 28-03-2018 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 8.4E-14 T 28-03-2018 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 8.4E-14 T 28-03-2018 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 4.0E-144 T 28-03-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 SUPERFAMILY SSF51905 2 175 1.19E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 SUPERFAMILY SSF51905 265 380 1.19E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 Gene3D G3DSA:3.50.50.60 2 352 1.9E-38 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS09425 389c5226db54aa9f2ac2cd545cbf5162 392 Pfam PF01494 FAD binding domain 2 338 9.4E-23 T 28-03-2018 IPR002938 FAD-binding domain GO:0071949 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 11 45 - T 28-03-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 SUPERFAMILY SSF100950 78 235 1.26E-22 T 28-03-2018 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 Gene3D G3DSA:1.10.10.10 6 63 1.2E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 SMART SM00420 11 63 2.5E-15 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 Pfam PF00455 DeoR C terminal sensor domain 78 235 6.4E-42 T 28-03-2018 IPR014036 DeoR C-terminal sensor domain AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 Gene3D G3DSA:3.40.50.1360 68 245 1.7E-29 T 28-03-2018 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 SUPERFAMILY SSF46785 9 63 3.2E-11 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 Pfam PF08220 DeoR-like helix-turn-helix domain 11 63 4.7E-15 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 29 43 6.8E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 43 61 6.8E-8 T 28-03-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 AM348_RS19750 d48f501c5d4b01b01f283de002f96271 256 SMART SM01134 76 237 2.4E-55 T 28-03-2018 AM348_RS20430 e72675f3336d46f7562249b9ecf51763 80 Gene3D G3DSA:1.10.287.1050 1 57 5.6E-16 T 28-03-2018 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 AM348_RS20625 58b5046fd0d5cbdbc8bf8715505e25a7 263 Gene3D G3DSA:1.10.3720.10 7 255 6.1E-31 T 28-03-2018 AM348_RS20625 58b5046fd0d5cbdbc8bf8715505e25a7 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 5.1E-28 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS20625 58b5046fd0d5cbdbc8bf8715505e25a7 263 SUPERFAMILY SSF161098 56 237 3.27E-36 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS05605 bb9c3efcb5aa630f114f5a5ece1ea2d4 104 SUPERFAMILY SSF52794 1 101 2.01E-35 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS05605 bb9c3efcb5aa630f114f5a5ece1ea2d4 104 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 94 1.6E-19 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS05605 bb9c3efcb5aa630f114f5a5ece1ea2d4 104 Gene3D G3DSA:3.40.50.2300 2 104 1.2E-35 T 28-03-2018 AM348_RS02330 f593339560a46db11313666db83c9d2f 162 Pfam PF13560 Helix-turn-helix domain 18 75 4.6E-11 T 28-03-2018 AM348_RS02330 f593339560a46db11313666db83c9d2f 162 SUPERFAMILY SSF47413 12 75 3.49E-13 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS02330 f593339560a46db11313666db83c9d2f 162 Gene3D G3DSA:1.10.260.40 45 112 9.4E-5 T 28-03-2018 AM348_RS02330 f593339560a46db11313666db83c9d2f 162 SMART SM00530 22 77 9.7E-9 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS02330 f593339560a46db11313666db83c9d2f 162 Gene3D G3DSA:1.10.10.60 18 44 2.6E-9 T 28-03-2018 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 Pfam PF13450 NAD(P)-binding Rossmann-like domain 84 157 1.9E-11 T 28-03-2018 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 SUPERFAMILY SSF51905 370 440 4.19E-15 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 SUPERFAMILY SSF51905 71 167 4.19E-15 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 SUPERFAMILY SSF51905 592 626 3.4E-10 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 SUPERFAMILY SSF51905 79 348 3.4E-10 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 SUPERFAMILY SSF51905 379 459 3.4E-10 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS18490 997d46ba8c95c5aab00211f626f72229 630 Gene3D G3DSA:3.50.50.60 52 628 4.7E-16 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS00270 3187400377abd3269a690d3980cabfea 133 Pfam PF07449 Hydrogenase-1 expression protein HyaE 10 115 2.0E-40 T 28-03-2018 IPR010893 [NiFe]-hydrogenase maturation factor HyaE AM348_RS00270 3187400377abd3269a690d3980cabfea 133 SUPERFAMILY SSF52833 6 125 2.16E-22 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS00270 3187400377abd3269a690d3980cabfea 133 Gene3D G3DSA:3.40.30.10 1 125 2.4E-7 T 28-03-2018 AM348_RS08475 9cd3de7634121cf1cc885487171dd00f 353 SUPERFAMILY SSF56935 204 234 2.52E-6 T 28-03-2018 AM348_RS08475 9cd3de7634121cf1cc885487171dd00f 353 SUPERFAMILY SSF56935 43 169 2.52E-6 T 28-03-2018 AM348_RS08475 9cd3de7634121cf1cc885487171dd00f 353 SUPERFAMILY SSF56935 265 329 2.52E-6 T 28-03-2018 AM348_RS18835 a77b8e03d9a9c1191ce1d10a9d834e9c 249 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS18835 a77b8e03d9a9c1191ce1d10a9d834e9c 249 Gene3D G3DSA:3.40.50.300 6 240 7.0E-45 T 28-03-2018 AM348_RS18835 a77b8e03d9a9c1191ce1d10a9d834e9c 249 SUPERFAMILY SSF52540 14 223 4.65E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18835 a77b8e03d9a9c1191ce1d10a9d834e9c 249 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 4 248 46.209 T 28-03-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 AM348_RS18835 a77b8e03d9a9c1191ce1d10a9d834e9c 249 SMART SM00382 25 210 5.0E-9 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS18835 a77b8e03d9a9c1191ce1d10a9d834e9c 249 Pfam PF00005 ABC transporter 18 162 1.1E-20 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.224 T 28-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 Pfam PF00572 Ribosomal protein L13 15 138 1.0E-56 T 28-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 28-03-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.7E-67 T 28-03-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 PIRSF PIRSF002181 1 142 8.0E-51 T 28-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 Gene3D G3DSA:3.90.1180.10 1 142 1.9E-62 T 28-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM348_RS07815 bfac86a2dcac3cd53b1f12e741ea5f93 142 SUPERFAMILY SSF52161 1 140 1.27E-60 T 28-03-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 260 3.8E-69 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 SUPERFAMILY SSF56784 1 265 1.76E-68 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 28-03-2018 AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 Gene3D G3DSA:3.40.50.1000 2 266 3.2E-37 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 1.6E-27 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 6.3E-63 T 28-03-2018 IPR023214 HAD-like domain AM348_RS04845 5da225f98d21ac6175ea2dae48e04e09 266 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 28-03-2018 AM348_RS13870 f484a74893dacc868795fdd7647f1f95 245 Gene3D G3DSA:3.20.20.70 1 245 3.2E-52 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS13870 f484a74893dacc868795fdd7647f1f95 245 Pfam PF00977 Histidine biosynthesis protein 1 234 1.8E-74 T 28-03-2018 IPR006062 Histidine biosynthesis GO:0000105 AM348_RS13870 f484a74893dacc868795fdd7647f1f95 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.436 T 28-03-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AM348_RS13870 f484a74893dacc868795fdd7647f1f95 245 SUPERFAMILY SSF51366 1 244 6.73E-65 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS13870 f484a74893dacc868795fdd7647f1f95 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 2.4E-78 T 28-03-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 AM348_RS06255 a98f83c6a1eaca7405c6a5e6547f3840 189 SUPERFAMILY SSF48150 1 183 5.73E-83 T 28-03-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 AM348_RS06255 a98f83c6a1eaca7405c6a5e6547f3840 189 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 2 182 9.3E-92 T 28-03-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 AM348_RS06255 a98f83c6a1eaca7405c6a5e6547f3840 189 Pfam PF03352 Methyladenine glycosylase 6 181 1.0E-82 T 28-03-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 AM348_RS06255 a98f83c6a1eaca7405c6a5e6547f3840 189 Gene3D G3DSA:1.10.340.30 1 182 9.4E-86 T 28-03-2018 AM348_RS13720 d9cd920e049f5ef3997b90bd25994bf0 248 Pfam PF00535 Glycosyl transferase family 2 4 135 2.1E-12 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS13720 d9cd920e049f5ef3997b90bd25994bf0 248 TIGRFAM TIGR04009 wcaE: colanic acid biosynthesis glycosyltransferase WcaE 1 247 4.5E-140 T 28-03-2018 IPR024010 Colanic acid biosynthesis, glycosyl transferase, WcaE AM348_RS13720 d9cd920e049f5ef3997b90bd25994bf0 248 Gene3D G3DSA:3.90.550.10 1 206 1.1E-21 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13720 d9cd920e049f5ef3997b90bd25994bf0 248 SUPERFAMILY SSF53448 2 206 1.45E-25 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS10025 d89239659145a5a51b5d90b024842f26 261 Pfam PF13988 Protein of unknown function (DUF4225) 66 225 2.4E-36 T 28-03-2018 IPR025320 Protein of unknown function DUF4225 AM348_RS16865 1c301f41b4d0c33f62e2c1e15b5bc2b9 308 Pfam PF07859 alpha/beta hydrolase fold 122 283 1.2E-9 T 28-03-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 AM348_RS16865 1c301f41b4d0c33f62e2c1e15b5bc2b9 308 SUPERFAMILY SSF53474 65 305 1.52E-36 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS16865 1c301f41b4d0c33f62e2c1e15b5bc2b9 308 Gene3D G3DSA:3.40.50.1820 41 307 7.0E-34 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS03400 91e5a7e636baa04450f77a4edd02c548 318 Pfam PF03916 Polysulphide reductase, NrfD 6 318 1.3E-106 T 28-03-2018 IPR005614 NrfD family AM348_RS03400 91e5a7e636baa04450f77a4edd02c548 318 Gene3D G3DSA:1.20.1630.10 5 318 3.4E-57 T 28-03-2018 AM348_RS03400 91e5a7e636baa04450f77a4edd02c548 318 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 5 318 2.1E-145 T 28-03-2018 IPR017566 NrfD AM348_RS07980 eeac468cd2a82b9592c1a5f4cc0620d9 185 Pfam PF02470 MlaD protein 39 116 2.7E-21 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS07980 eeac468cd2a82b9592c1a5f4cc0620d9 185 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 153 3.9E-55 T 28-03-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 AM348_RS14490 160652636d75a67e3ba386bc6ea7778e 400 ProDom PD035357 TRANSFERASE 2.1.1.- LYSINE METHYLTRANSFERASE N-METHYLTRANSFERASE FLAGELLUM LYSINE-N-METHYLASE BIOSYNTHETIC FLAGELLIN N-METHYLATION 234 400 6.0E-52 T 28-03-2018 IPR020193 Flagellin lysine-N-methylase, C-terminal AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 Gene3D G3DSA:3.40.190.10 35 160 8.2E-18 T 28-03-2018 AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 Pfam PF13416 Bacterial extracellular solute-binding protein 56 327 3.4E-26 T 28-03-2018 AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 SUPERFAMILY SSF53850 33 355 5.44E-54 T 28-03-2018 AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 62 83 7.0E-6 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 136 152 7.0E-6 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 276 295 7.0E-6 T 28-03-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 AM348_RS17115 5ab69b25292de776e2aef5e519674f51 381 Gene3D G3DSA:3.40.190.10 161 327 1.0E-28 T 28-03-2018 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 1.2E-26 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 1.2E-26 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 1.2E-26 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 1.2E-26 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 Gene3D G3DSA:3.40.50.1370 5 163 5.6E-56 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 Gene3D G3DSA:3.40.50.1370 164 334 6.0E-52 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 332 2.2E-137 T 28-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 SUPERFAMILY SSF53671 2 332 3.54E-99 T 28-03-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 2.7E-48 T 28-03-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 3.2E-55 T 28-03-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 5.9E-32 T 28-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 5.9E-32 T 28-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 5.9E-32 T 28-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 5.9E-32 T 28-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 5.9E-32 T 28-03-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 AM348_RS02415 1299694c1487b5dbc41b77b915fcff3a 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 83.144 T 28-03-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 AM348_RS22185 3adab376667144efc16990947809d31d 553 Gene3D G3DSA:1.10.287.130 334 385 3.7E-14 T 28-03-2018 AM348_RS22185 3adab376667144efc16990947809d31d 553 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 429 539 1.2E-13 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22185 3adab376667144efc16990947809d31d 553 Gene3D G3DSA:3.30.450.20 207 333 1.4E-10 T 28-03-2018 AM348_RS22185 3adab376667144efc16990947809d31d 553 SUPERFAMILY SSF55890 332 376 8.24E-9 T 28-03-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 AM348_RS22185 3adab376667144efc16990947809d31d 553 Gene3D G3DSA:3.30.565.10 389 549 7.6E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22185 3adab376667144efc16990947809d31d 553 Pfam PF00989 PAS fold 225 286 3.1E-5 T 28-03-2018 IPR013767 PAS fold GO:0006355 AM348_RS22185 3adab376667144efc16990947809d31d 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 6.6E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22185 3adab376667144efc16990947809d31d 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 497 6.6E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22185 3adab376667144efc16990947809d31d 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 538 6.6E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22185 3adab376667144efc16990947809d31d 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 501 519 6.6E-8 T 28-03-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 AM348_RS22185 3adab376667144efc16990947809d31d 553 SMART SM00091 222 292 1.8E-8 T 28-03-2018 IPR000014 PAS domain AM348_RS22185 3adab376667144efc16990947809d31d 553 SUPERFAMILY SSF55785 223 282 8.55E-9 T 28-03-2018 IPR000014 PAS domain AM348_RS22185 3adab376667144efc16990947809d31d 553 Pfam PF17203 Single cache domain 3 64 173 4.7E-20 T 28-03-2018 IPR033463 Single cache domain 3 AM348_RS22185 3adab376667144efc16990947809d31d 553 SMART SM00387 428 541 5.4E-21 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22185 3adab376667144efc16990947809d31d 553 Gene3D G3DSA:3.30.450.20 41 173 2.0E-23 T 28-03-2018 AM348_RS22185 3adab376667144efc16990947809d31d 553 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 330 373 7.3E-8 T 28-03-2018 AM348_RS22185 3adab376667144efc16990947809d31d 553 SUPERFAMILY SSF103190 48 179 3.14E-33 T 28-03-2018 IPR029151 Periplasmic sensor domain-like AM348_RS22185 3adab376667144efc16990947809d31d 553 SUPERFAMILY SSF55874 408 541 4.85E-24 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 262 1.3E-63 T 28-03-2018 AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.1E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.1E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.1E-10 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 SUPERFAMILY SSF51735 7 264 1.28E-80 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 Gene3D G3DSA:3.40.50.720 1 39 1.8E-8 T 28-03-2018 AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 Gene3D G3DSA:3.40.50.720 40 265 3.5E-66 T 28-03-2018 AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.6E-41 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.6E-41 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.6E-41 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 2.6E-41 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.6E-41 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22455 0452223145d8cbbd575942b6f0e870ec 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.6E-41 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS06660 bc065ca69e34f80341891581f8fd0aae 239 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 23 238 1.6E-64 T 28-03-2018 IPR014030 Beta-ketoacyl synthase, N-terminal AM348_RS01995 03c85fa2511ec0d7c05cfde251ff1634 54 Pfam PF06568 Domain of unknown function (DUF1127) 18 54 3.3E-12 T 28-03-2018 IPR009506 Protein of unknown function DUF1127 AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 Gene3D G3DSA:2.60.40.420 29 169 7.0E-28 T 28-03-2018 IPR008972 Cupredoxin AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 Gene3D G3DSA:2.60.40.420 413 538 1.5E-28 T 28-03-2018 IPR008972 Cupredoxin AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 SUPERFAMILY SSF49503 352 538 7.2E-29 T 28-03-2018 IPR008972 Cupredoxin AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 Pfam PF07731 Multicopper oxidase 417 538 4.7E-25 T 28-03-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 ProSitePatterns PS00080 Multicopper oxidases signature 2. 521 532 - T 28-03-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 Pfam PF07732 Multicopper oxidase 52 166 2.7E-31 T 28-03-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 SUPERFAMILY SSF49503 172 288 1.77E-36 T 28-03-2018 IPR008972 Cupredoxin AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 SUPERFAMILY SSF49503 514 538 1.77E-36 T 28-03-2018 IPR008972 Cupredoxin AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 Pfam PF00394 Multicopper oxidase 227 295 4.3E-4 T 28-03-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 SUPERFAMILY SSF49503 33 166 1.09E-30 T 28-03-2018 IPR008972 Cupredoxin AM348_RS01020 b1755558d2b176bee111f34f7afb3e9f 538 Gene3D G3DSA:2.60.40.420 170 412 4.5E-30 T 28-03-2018 IPR008972 Cupredoxin AM348_RS07865 5028d80612a00b9135c3dffb22c6bc0b 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 6.9E-57 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS07865 5028d80612a00b9135c3dffb22c6bc0b 155 SUPERFAMILY SSF51197 1 153 2.75E-42 T 28-03-2018 AM348_RS07865 5028d80612a00b9135c3dffb22c6bc0b 155 Pfam PF04074 Domain of unknown function (DUF386) 1 149 1.8E-40 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS07865 5028d80612a00b9135c3dffb22c6bc0b 155 Gene3D G3DSA:2.60.120.370 1 153 1.3E-44 T 28-03-2018 IPR004375 YhcH/YjgK/YiaL family AM348_RS14835 b9d243de615f2ff77a0380f951e7d5d5 904 Pfam PF13550 Putative phage tail protein 311 419 5.1E-6 T 28-03-2018 IPR032876 Tip attachment protein J AM348_RS14835 b9d243de615f2ff77a0380f951e7d5d5 904 Gene3D G3DSA:2.60.40.10 456 543 8.0E-5 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS14835 b9d243de615f2ff77a0380f951e7d5d5 904 Pfam PF09327 Domain of unknown function (DUF1983) 739 820 4.1E-19 T 28-03-2018 IPR015406 Domain of unknown function DUF1983 AM348_RS14835 b9d243de615f2ff77a0380f951e7d5d5 904 Gene3D G3DSA:2.60.40.10 567 641 0.0015 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 Gene3D G3DSA:3.40.1080.10 225 486 1.1E-49 T 28-03-2018 AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 2 208 2.0E-63 T 28-03-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 313 457 5.0E-42 T 28-03-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 SUPERFAMILY SSF100950 222 486 5.94E-73 T 28-03-2018 AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 2 486 1.2E-225 T 28-03-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 SUPERFAMILY SSF100950 2 215 5.33E-59 T 28-03-2018 AM348_RS09360 f74f824f270ae5351d6d7684da93e877 488 Gene3D G3DSA:3.40.1080.10 1 224 8.5E-33 T 28-03-2018 AM348_RS23420 4c0c6c08312040c093ca8a58200ef2c2 439 Pfam PF05525 Branched-chain amino acid transport protein 7 429 7.0E-160 T 28-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AM348_RS23420 4c0c6c08312040c093ca8a58200ef2c2 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 1.5E-163 T 28-03-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.0E-44 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 PRINTS PR00340 P-II protein signature 2 17 2.9E-44 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 PRINTS PR00340 P-II protein signature 23 41 2.9E-44 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 PRINTS PR00340 P-II protein signature 83 103 2.9E-44 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 PRINTS PR00340 P-II protein signature 52 75 2.9E-44 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 Gene3D G3DSA:3.30.70.120 1 108 2.7E-49 T 28-03-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 28-03-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 SMART SM00938 4 105 2.0E-67 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 28-03-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 SUPERFAMILY SSF54913 1 112 2.22E-46 T 28-03-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta AM348_RS11370 7126751321fe4ed152141a8e8c3b96ef 112 PIRSF PIRSF039144 1 112 2.3E-57 T 28-03-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 AM348_RS07120 c2593e36ae595b49f77258c984113fe0 1982 SUPERFAMILY SSF103515 1747 1981 4.58E-20 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS07120 c2593e36ae595b49f77258c984113fe0 1982 SMART SM00869 1708 1971 0.0069 T 28-03-2018 IPR005546 Autotransporter beta-domain AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 SMART SM00079 42 262 1.4E-5 T 28-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 4.9E-61 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 SUPERFAMILY SSF53850 14 262 3.71E-69 T 28-03-2018 AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 66 79 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 Gene3D G3DSA:3.40.190.10 185 276 3.4E-12 T 28-03-2018 AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 SMART SM00062 42 263 1.7E-68 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS18530 5e76cb07de7482abe236e3af001e4820 277 Gene3D G3DSA:3.40.190.10 31 184 4.7E-45 T 28-03-2018 AM348_RS01900 f438c1c5223db319bdbd7c8e5b4530f1 241 Gene3D G3DSA:1.10.10.10 39 214 1.1E-9 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS01900 f438c1c5223db319bdbd7c8e5b4530f1 241 SUPERFAMILY SSF46894 146 210 2.01E-12 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS01900 f438c1c5223db319bdbd7c8e5b4530f1 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 208 2.0E-9 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS01900 f438c1c5223db319bdbd7c8e5b4530f1 241 SMART SM00421 152 209 5.0E-11 T 28-03-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 173 185 - T 28-03-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-5334118 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 Pfam PF00145 C-5 cytosine-specific DNA methylase 91 452 7.7E-73 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 275 288 2.1E-15 T 28-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 92 108 2.1E-15 T 28-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 221 235 2.1E-15 T 28-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 93 452 1.2E-100 T 28-03-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 Gene3D G3DSA:3.40.50.150 83 314 2.2E-58 T 28-03-2018 AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 SUPERFAMILY SSF53335 91 454 1.22E-77 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS14340 9cbc4296104702b64b030ab04cfa4308 476 Gene3D G3DSA:3.90.120.10 315 442 1.3E-23 T 28-03-2018 AM348_RS09345 4a8d54ecf1f4c7684382afcf5a985e30 211 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 6.5E-72 T 28-03-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 AM348_RS09345 4a8d54ecf1f4c7684382afcf5a985e30 211 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 39.611 T 28-03-2018 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 AM348_RS09345 4a8d54ecf1f4c7684382afcf5a985e30 211 Pfam PF01810 LysE type translocator 14 201 1.7E-56 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Pfam PF12838 4Fe-4S dicluster domain 60 115 2.0E-7 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Gene3D G3DSA:3.30.70.20 23 69 4.6E-6 T 28-03-2018 AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Gene3D G3DSA:3.30.70.20 117 156 2.6E-8 T 28-03-2018 AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 10 216 4.2E-73 T 28-03-2018 IPR004494 MauM/NapG ferredoxin-type protein AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Pfam PF12800 4Fe-4S binding domain 183 196 0.2 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Pfam PF12800 4Fe-4S binding domain 137 155 0.1 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Gene3D G3DSA:3.30.70.20 189 223 0.009 T 28-03-2018 AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Gene3D G3DSA:3.30.70.20 70 116 1.0E-10 T 28-03-2018 AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 61 72 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 SUPERFAMILY SSF54862 59 204 5.93E-25 T 28-03-2018 AM348_RS12900 71f4ebfad6182b6de0eb0c7ff7adc9a0 231 Gene3D G3DSA:3.30.70.20 157 188 2.6E-7 T 28-03-2018 AM348_RS12035 b2808c79d94d3bffa0d0e4f25d4c1cb1 72 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 6.7E-29 T 28-03-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AM348_RS12035 b2808c79d94d3bffa0d0e4f25d4c1cb1 72 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 3.0E-24 T 28-03-2018 IPR024530 Putative quorum-sensing-regulated virulence factor AM348_RS13440 be33bfeb00a46834c98f6a5e63dda319 334 SUPERFAMILY SSF101478 4 327 8.11E-67 T 28-03-2018 IPR005502 ADP-ribosylation/Crystallin J1 AM348_RS13440 be33bfeb00a46834c98f6a5e63dda319 334 Pfam PF03747 ADP-ribosylglycohydrolase 8 302 7.9E-60 T 28-03-2018 IPR005502 ADP-ribosylation/Crystallin J1 AM348_RS13440 be33bfeb00a46834c98f6a5e63dda319 334 Gene3D G3DSA:1.10.4080.10 1 331 3.3E-67 T 28-03-2018 IPR005502 ADP-ribosylation/Crystallin J1 AM348_RS18670 fbc15715a45e34c992ee546675dcb0de 122 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 18 121 3.9E-33 T 28-03-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 AM348_RS18670 fbc15715a45e34c992ee546675dcb0de 122 SUPERFAMILY SSF89360 18 111 8.24E-27 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS18670 fbc15715a45e34c992ee546675dcb0de 122 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 17 122 1.6E-48 T 28-03-2018 IPR011298 FeS assembly scaffold SufA GO:0097428 AM348_RS18670 fbc15715a45e34c992ee546675dcb0de 122 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 103 120 - T 28-03-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 AM348_RS18670 fbc15715a45e34c992ee546675dcb0de 122 Gene3D G3DSA:2.60.300.12 18 122 4.7E-32 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS18670 fbc15715a45e34c992ee546675dcb0de 122 Pfam PF01521 Iron-sulphur cluster biosynthesis 18 118 2.6E-19 T 28-03-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 SMART SM00052 395 635 3.0E-52 T 28-03-2018 IPR001633 EAL domain AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 Gene3D G3DSA:3.20.20.450 389 645 5.2E-42 T 28-03-2018 IPR001633 EAL domain AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 SMART SM00267 213 385 2.0E-33 T 28-03-2018 IPR000160 GGDEF domain AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 Pfam PF00563 EAL domain 404 628 5.8E-34 T 28-03-2018 IPR001633 EAL domain AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 Pfam PF00990 Diguanylate cyclase, GGDEF domain 225 380 7.9E-27 T 28-03-2018 IPR000160 GGDEF domain AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 34 130 2.8E-31 T 28-03-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 SUPERFAMILY SSF141868 403 642 3.53E-34 T 28-03-2018 IPR001633 EAL domain AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 Gene3D G3DSA:3.30.70.270 203 388 2.7E-24 T 28-03-2018 AM348_RS07705 95c45a346bcd849b7e1567595b3c09ff 646 SUPERFAMILY SSF55073 230 387 1.96E-21 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS17845 1b8ab34e33261851f9664943876e5cfd 248 ProDom PD120112 LIPOPROTEIN YNFC MEMBRANE UPF0257 PRECURSOR PALMITATE SIGNAL INNER 30 248 9.0E-103 T 28-03-2018 IPR010646 Uncharacterised protein family UPF0257 GO:0005886 AM348_RS17845 1b8ab34e33261851f9664943876e5cfd 248 Pfam PF06788 Uncharacterised protein family (UPF0257) 13 248 6.0E-124 T 28-03-2018 IPR010646 Uncharacterised protein family UPF0257 GO:0005886 AM348_RS17845 1b8ab34e33261851f9664943876e5cfd 248 Hamap MF_01065 UPF0257 lipoprotein YnfC [ynfC]. 14 248 39.631 T 28-03-2018 IPR010646 Uncharacterised protein family UPF0257 GO:0005886 AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 SUPERFAMILY SSF51735 3 253 7.52E-57 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 Gene3D G3DSA:3.40.50.720 2 256 1.5E-53 T 28-03-2018 AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.0051 T 28-03-2018 AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 9.3E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 9.3E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 9.3E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 9.3E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 9.3E-19 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS22825 782ae7483461a9fc3c1c3650e7ca101a 256 Pfam PF00106 short chain dehydrogenase 3 191 2.2E-39 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 8 255 1.2E-122 T 28-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 256 434 6.3E-93 T 28-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 ProSitePatterns PS00161 Isocitrate lyase signature. 193 198 - T 28-03-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 Pfam PF00463 Isocitrate lyase family 8 255 7.1E-62 T 28-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 Pfam PF00463 Isocitrate lyase family 256 434 1.9E-50 T 28-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 PIRSF PIRSF001362 1 434 4.2E-230 T 28-03-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 SUPERFAMILY SSF51621 4 417 6.73E-158 T 28-03-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 AM348_RS03815 051cc730ef8cbd088ca0443e2d2d41f4 434 Gene3D G3DSA:3.20.20.60 1 417 9.0E-155 T 28-03-2018 AM348_RS15275 8b5882c636f0c5380f45c36d2a003b72 877 Pfam PF02470 MlaD protein 636 724 2.4E-9 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS15275 8b5882c636f0c5380f45c36d2a003b72 877 Pfam PF02470 MlaD protein 280 348 1.1E-7 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS15275 8b5882c636f0c5380f45c36d2a003b72 877 Pfam PF02470 MlaD protein 46 137 3.5E-17 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS15275 8b5882c636f0c5380f45c36d2a003b72 877 Pfam PF02470 MlaD protein 164 220 5.1E-7 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS15275 8b5882c636f0c5380f45c36d2a003b72 877 Pfam PF02470 MlaD protein 747 809 5.8E-10 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS14190 ff748eab55838cb45c917aea450b6d3a 562 SUPERFAMILY SSF161098 26 282 1.31E-43 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS14190 ff748eab55838cb45c917aea450b6d3a 562 SUPERFAMILY SSF161098 300 556 6.32E-35 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS14190 ff748eab55838cb45c917aea450b6d3a 562 Gene3D G3DSA:1.10.3720.10 22 288 3.6E-30 T 28-03-2018 AM348_RS14190 ff748eab55838cb45c917aea450b6d3a 562 Gene3D G3DSA:1.10.3720.10 335 560 1.6E-23 T 28-03-2018 AM348_RS14190 ff748eab55838cb45c917aea450b6d3a 562 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 275 7.3E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS00050 04e08e435f9afc669988681e505c9b94 100 Gene3D G3DSA:3.30.70.100 1 98 1.6E-18 T 28-03-2018 AM348_RS00050 04e08e435f9afc669988681e505c9b94 100 SUPERFAMILY SSF54909 1 90 1.11E-26 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS00050 04e08e435f9afc669988681e505c9b94 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 3.1E-15 T 28-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM348_RS00650 9210c862702c38a9b5cd9407367985ed 232 Pfam PF04170 NlpE N-terminal domain 45 129 3.9E-26 T 28-03-2018 IPR007298 Copper resistance lipoprotein NlpE AM348_RS00650 9210c862702c38a9b5cd9407367985ed 232 Pfam PF17185 NlpE C-terminal OB domain 143 232 4.6E-34 T 28-03-2018 IPR033450 NlpE, C-terminal OB domain AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 230 27.961 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 Pfam PF02107 Flagellar L-ring protein 47 231 1.4E-59 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 PRINTS PR01008 Flagellar L-ring protein signature 73 85 4.3E-36 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 PRINTS PR01008 Flagellar L-ring protein signature 172 188 4.3E-36 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 PRINTS PR01008 Flagellar L-ring protein signature 146 161 4.3E-36 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 PRINTS PR01008 Flagellar L-ring protein signature 193 207 4.3E-36 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS19900 de9380e2e3a6ea044e472b743fc5cd21 232 PRINTS PR01008 Flagellar L-ring protein signature 209 223 4.3E-36 T 28-03-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 AM348_RS23395 3f2abd53447b6fda4b6fcc79395b6d74 181 SUPERFAMILY SSF54909 3 95 2.47E-21 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS23395 3f2abd53447b6fda4b6fcc79395b6d74 181 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 75 9.9E-9 T 28-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM348_RS23395 3f2abd53447b6fda4b6fcc79395b6d74 181 Gene3D G3DSA:3.30.70.100 4 101 5.4E-15 T 28-03-2018 AM348_RS23380 fdde75516798e476577c2b35e46d7276 193 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 4.7E-30 T 28-03-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 AM348_RS23380 fdde75516798e476577c2b35e46d7276 193 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 1 193 54.18 T 28-03-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 AM348_RS23380 fdde75516798e476577c2b35e46d7276 193 PIRSF PIRSF011489 1 193 6.2E-83 T 28-03-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 AM348_RS09115 890eb7660ca4140dd18065b87943d74b 140 SUPERFAMILY SSF160719 30 134 1.7E-17 T 28-03-2018 AM348_RS09115 890eb7660ca4140dd18065b87943d74b 140 Gene3D G3DSA:3.10.450.40 18 135 1.4E-19 T 28-03-2018 AM348_RS09115 890eb7660ca4140dd18065b87943d74b 140 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 9 139 3.4E-36 T 28-03-2018 IPR017737 Type VI secretion system, lysozyme-related protein AM348_RS09115 890eb7660ca4140dd18065b87943d74b 140 Pfam PF04965 Gene 25-like lysozyme 31 116 3.0E-15 T 28-03-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD AM348_RS09850 f31a3b37c7c1c0bd9ac060550bc054b9 75 SUPERFAMILY SSF50182 23 73 2.89E-19 T 28-03-2018 IPR010920 LSM domain AM348_RS09850 f31a3b37c7c1c0bd9ac060550bc054b9 75 Gene3D G3DSA:2.30.30.100 22 73 1.5E-32 T 28-03-2018 AM348_RS09850 f31a3b37c7c1c0bd9ac060550bc054b9 75 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 72 1.6E-24 T 28-03-2018 IPR010305 Protein of unknown function DUF903 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 SUPERFAMILY SSF53067 7 255 9.91E-55 T 28-03-2018 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 PIRSF PIRSF000538 5 501 4.3E-100 T 28-03-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 Gene3D G3DSA:3.30.420.40 2 249 3.8E-49 T 28-03-2018 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 Gene3D G3DSA:3.30.420.40 250 513 6.3E-49 T 28-03-2018 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 365 385 - T 28-03-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 252 2.4E-33 T 28-03-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 SUPERFAMILY SSF53067 254 493 2.31E-52 T 28-03-2018 AM348_RS06515 6bcb0b05bb536c8d90fe6939f6ee2e06 514 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 452 1.7E-37 T 28-03-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 AM348_RS20045 1afd25cca34358282d3148c4eaa92c08 842 Gene3D G3DSA:3.90.550.10 223 503 2.2E-19 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS20045 1afd25cca34358282d3148c4eaa92c08 842 SUPERFAMILY SSF53448 244 532 2.63E-26 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS20045 1afd25cca34358282d3148c4eaa92c08 842 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 63 745 52.015 T 28-03-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 AM348_RS20045 1afd25cca34358282d3148c4eaa92c08 842 Pfam PF00535 Glycosyl transferase family 2 246 428 2.7E-23 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS01150 3654e7685f25a068e6173184aac7f6bc 206 SUPERFAMILY SSF52540 1 190 1.45E-44 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01150 3654e7685f25a068e6173184aac7f6bc 206 Gene3D G3DSA:3.40.50.300 1 206 1.2E-49 T 28-03-2018 AM348_RS01150 3654e7685f25a068e6173184aac7f6bc 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 5 190 1.7E-68 T 28-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AM348_RS01150 3654e7685f25a068e6173184aac7f6bc 206 Pfam PF01121 Dephospho-CoA kinase 4 177 3.0E-75 T 28-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AM348_RS01150 3654e7685f25a068e6173184aac7f6bc 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 192 27.982 T 28-03-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 AM348_RS21350 0d395b86153685d012538ee30bc63f98 240 SMART SM00382 26 215 3.9E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS21350 0d395b86153685d012538ee30bc63f98 240 Pfam PF00005 ABC transporter 19 165 3.5E-19 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS21350 0d395b86153685d012538ee30bc63f98 240 Gene3D G3DSA:3.40.50.300 1 227 9.4E-38 T 28-03-2018 AM348_RS21350 0d395b86153685d012538ee30bc63f98 240 SUPERFAMILY SSF52540 2 226 1.07E-39 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS21195 24810681e20bfa86a1c288d21fff07ca 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 3.7E-17 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS21195 24810681e20bfa86a1c288d21fff07ca 86 SUPERFAMILY SSF159871 3 86 1.31E-22 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS21195 24810681e20bfa86a1c288d21fff07ca 86 Gene3D G3DSA:3.30.1660.10 22 86 1.3E-19 T 28-03-2018 IPR025543 Dodecin-like AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 28-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 SUPERFAMILY SSF52016 421 610 5.89E-60 T 28-03-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 Gene3D G3DSA:3.40.50.2300 55 173 0.0061 T 28-03-2018 AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 28-03-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 Pfam PF00920 Dehydratase family 34 607 2.1E-218 T 28-03-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 1.3E-271 T 28-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 SUPERFAMILY SSF143975 3 420 9.81E-134 T 28-03-2018 AM348_RS05100 8a3d0389194f626cee677f94bfbfaa7b 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.23 T 28-03-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 AM348_RS15520 8ee196555b74956cc71ce307d97773e3 514 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 6.5E-299 T 28-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 AM348_RS15520 8ee196555b74956cc71ce307d97773e3 514 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 514 367.092 T 28-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 AM348_RS15520 8ee196555b74956cc71ce307d97773e3 514 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 512 2.7E-301 T 28-03-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 AM348_RS18370 b0b85ddd412ef5218881edab45bf3d51 161 SMART SM00972 102 158 9.3E-6 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS18370 b0b85ddd412ef5218881edab45bf3d51 161 Pfam PF05229 Spore Coat Protein U domain 32 158 1.6E-17 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS03985 520a81555d5554cf8dbf0c27b87883f5 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 161 1.0E-4 T 28-03-2018 AM348_RS03985 520a81555d5554cf8dbf0c27b87883f5 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.444 T 28-03-2018 IPR022973 Ribosomal protein L10 AM348_RS03985 520a81555d5554cf8dbf0c27b87883f5 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 28-03-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS03985 520a81555d5554cf8dbf0c27b87883f5 165 SUPERFAMILY SSF160369 4 160 1.15E-46 T 28-03-2018 AM348_RS03985 520a81555d5554cf8dbf0c27b87883f5 165 Pfam PF00466 Ribosomal protein L10 5 101 9.5E-25 T 28-03-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 AM348_RS05960 90acd3719b763ffbf45101eb000e5c13 427 Gene3D G3DSA:1.20.5.170 42 137 4.3E-4 T 28-03-2018 AM348_RS05960 90acd3719b763ffbf45101eb000e5c13 427 Gene3D G3DSA:1.10.287.620 146 287 0.0051 T 28-03-2018 AM348_RS05960 90acd3719b763ffbf45101eb000e5c13 427 Pfam PF01551 Peptidase family M23 328 421 5.7E-26 T 28-03-2018 IPR016047 Peptidase M23 AM348_RS05960 90acd3719b763ffbf45101eb000e5c13 427 Gene3D G3DSA:2.70.70.10 288 427 1.1E-32 T 28-03-2018 AM348_RS05960 90acd3719b763ffbf45101eb000e5c13 427 SUPERFAMILY SSF51261 227 425 1.31E-46 T 28-03-2018 IPR011055 Duplicated hybrid motif AM348_RS13175 758d69148d860273e938bf2743094a2c 489 PIRSF PIRSF006060 1 483 8.1E-79 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS13175 758d69148d860273e938bf2743094a2c 489 ProSitePatterns PS00218 Amino acid permeases signature. 46 77 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS13175 758d69148d860273e938bf2743094a2c 489 Pfam PF00324 Amino acid permease 21 475 1.9E-143 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS18655 7cd6c6abdd285b71175391d8e4cc7aad 423 SUPERFAMILY SSF101960 12 420 8.24E-111 T 28-03-2018 AM348_RS18655 7cd6c6abdd285b71175391d8e4cc7aad 423 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 133 409 1.2E-86 T 28-03-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 AM348_RS18655 7cd6c6abdd285b71175391d8e4cc7aad 423 Pfam PF01458 Uncharacterized protein family (UPF0051) 170 393 1.4E-69 T 28-03-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 AM348_RS03455 9a45dc82b1532ed20f86e7a3f4ad74aa 449 Pfam PF00860 Permease family 26 409 5.8E-86 T 28-03-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 AM348_RS21685 bb9e735f4cc38c53f7a4c63bc173af11 448 Pfam PF01758 Sodium Bile acid symporter family 96 263 1.7E-27 T 28-03-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AM348_RS21840 41d10079efd079ab07998d70fbcef927 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 1.6E-9 T 28-03-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AM348_RS21840 41d10079efd079ab07998d70fbcef927 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 7 29 7.9E-6 T 28-03-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 AM348_RS08250 dc7c93af03726a131fec5a43bbb84f40 94 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 4 84 3.2E-12 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS08250 dc7c93af03726a131fec5a43bbb84f40 94 Gene3D G3DSA:3.40.50.2300 2 94 8.6E-20 T 28-03-2018 AM348_RS08250 dc7c93af03726a131fec5a43bbb84f40 94 SUPERFAMILY SSF52794 3 92 1.19E-17 T 28-03-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 AM348_RS04595 de22e7da201ce0a82a24cefa013f067e 295 PIRSF PIRSF037840 1 295 3.4E-137 T 28-03-2018 IPR017291 Sulfofructosephosphate aldolase, YihT GO:0061595|GO:1902777 MetaCyc: PWY-7446 AM348_RS04595 de22e7da201ce0a82a24cefa013f067e 295 Pfam PF01791 DeoC/LacD family aldolase 21 261 1.9E-48 T 28-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS04595 de22e7da201ce0a82a24cefa013f067e 295 SMART SM01133 20 262 1.8E-8 T 28-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS04595 de22e7da201ce0a82a24cefa013f067e 295 Gene3D G3DSA:3.20.20.70 3 295 2.6E-61 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS04595 de22e7da201ce0a82a24cefa013f067e 295 Hamap MF_01912 Sulfofructosephosphate aldolase. 5 295 65.225 T 28-03-2018 IPR017291 Sulfofructosephosphate aldolase, YihT GO:0061595|GO:1902777 MetaCyc: PWY-7446 AM348_RS04595 de22e7da201ce0a82a24cefa013f067e 295 SUPERFAMILY SSF51569 8 291 4.03E-60 T 28-03-2018 AM348_RS05705 ad6559e9ba1aa932b68ae87aed9948c0 63 Pfam PF05534 HicB family 17 47 7.9E-5 T 28-03-2018 IPR008651 Uncharacterised protein family HicB AM348_RS05705 ad6559e9ba1aa932b68ae87aed9948c0 63 Gene3D G3DSA:1.10.1220.10 3 58 1.9E-13 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS05705 ad6559e9ba1aa932b68ae87aed9948c0 63 SUPERFAMILY SSF47598 14 55 1.75E-9 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS01910 341f0f4107c83b9be46c030d6d56a32d 157 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 157 42.1 T 28-03-2018 IPR020914 Uncharacterised protein family UPF0442 AM348_RS01910 341f0f4107c83b9be46c030d6d56a32d 157 Pfam PF12821 Threonine/Serine exporter, ThrE 13 147 3.9E-34 T 28-03-2018 IPR024528 Threonine/Serine exporter, ThrE AM348_RS17685 cd43c824ee461877a28387d2398de669 175 Gene3D G3DSA:3.40.630.30 9 175 1.6E-24 T 28-03-2018 AM348_RS17685 cd43c824ee461877a28387d2398de669 175 Pfam PF00583 Acetyltransferase (GNAT) family 51 148 3.8E-10 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS17685 cd43c824ee461877a28387d2398de669 175 SUPERFAMILY SSF55729 19 175 1.92E-23 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS19730 634defaf46f8d186aae56136db32790f 372 Pfam PF01933 Uncharacterised protein family UPF0052 4 298 1.3E-42 T 28-03-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 AM348_RS19730 634defaf46f8d186aae56136db32790f 372 SUPERFAMILY SSF142338 3 83 1.44E-54 T 28-03-2018 AM348_RS19730 634defaf46f8d186aae56136db32790f 372 SUPERFAMILY SSF142338 130 365 1.44E-54 T 28-03-2018 AM348_RS19730 634defaf46f8d186aae56136db32790f 372 Gene3D G3DSA:3.40.50.10680 132 371 2.9E-39 T 28-03-2018 AM348_RS14050 055f74815f2787f96c92876bde10efb8 224 Gene3D G3DSA:3.40.50.10150 50 221 6.9E-77 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS14050 055f74815f2787f96c92876bde10efb8 224 Pfam PF02288 Dehydratase medium subunit 69 181 1.5E-34 T 28-03-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor AM348_RS14050 055f74815f2787f96c92876bde10efb8 224 PIRSF PIRSF018506 1 224 2.1E-112 T 28-03-2018 IPR025541 Propanediol/glycerol dehydratase, medium subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS14050 055f74815f2787f96c92876bde10efb8 224 SUPERFAMILY SSF52968 47 224 3.66E-72 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 17.795 T 28-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 38.091 T 28-03-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 Gene3D G3DSA:1.10.287.1080 111 203 4.6E-19 T 28-03-2018 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 9.7E-32 T 28-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 198 2.2E-29 T 28-03-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 202 7.9E-17 T 28-03-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 SUPERFAMILY SSF101386 115 202 1.31E-22 T 28-03-2018 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 SUPERFAMILY SSF141734 6 122 1.7E-47 T 28-03-2018 AM348_RS13860 a800f23f8438e56c5fd7d739cc331d4c 203 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 1.0E-23 T 28-03-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 AM348_RS23635 676baafa9a4e22c210a069efb85a6959 310 Gene3D G3DSA:3.20.20.330 1 310 9.8E-106 T 28-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM348_RS23635 676baafa9a4e22c210a069efb85a6959 310 PIRSF PIRSF037505 6 242 2.6E-7 T 28-03-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 AM348_RS23635 676baafa9a4e22c210a069efb85a6959 310 PIRSF PIRSF037505 269 309 7.1 T 28-03-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 AM348_RS23635 676baafa9a4e22c210a069efb85a6959 310 Pfam PF02574 Homocysteine S-methyltransferase 17 308 2.8E-80 T 28-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM348_RS23635 676baafa9a4e22c210a069efb85a6959 310 SUPERFAMILY SSF82282 7 308 6.54E-86 T 28-03-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 SUPERFAMILY SSF50486 208 309 4.55E-37 T 28-03-2018 IPR011034 Formyl transferase, C-terminal-like GO:0003824 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 SUPERFAMILY SSF53328 5 207 1.83E-68 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 Pfam PF00551 Formyl transferase 6 184 1.4E-55 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 6.9E-31 T 28-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 4.1E-123 T 28-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 28-03-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 Gene3D G3DSA:3.10.25.10 210 314 3.1E-33 T 28-03-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 Gene3D G3DSA:3.40.50.170 2 209 1.2E-70 T 28-03-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 AM348_RS07505 d7e30d6c703b92955c39ee545a538f2c 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 37.735 T 28-03-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 AM348_RS02535 00061727e423bb31f693f0a31aff852a 214 Pfam PF14187 Domain of unknown function (DUF4310) 4 211 3.0E-107 T 28-03-2018 IPR025456 Protein of unknown function DUF4310 AM348_RS02535 00061727e423bb31f693f0a31aff852a 214 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 5 213 5.9E-118 T 28-03-2018 IPR025456 Protein of unknown function DUF4310 AM348_RS03565 04dc25cf17487c3d092ffd27c0b89c3f 172 Pfam PF01475 Ferric uptake regulator family 20 138 1.9E-14 T 28-03-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 AM348_RS03565 04dc25cf17487c3d092ffd27c0b89c3f 172 SUPERFAMILY SSF46785 12 144 1.22E-33 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03565 04dc25cf17487c3d092ffd27c0b89c3f 172 Gene3D G3DSA:1.10.10.10 1 92 6.5E-26 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS11240 3f02aa6b107d6cbf4c76cd216edc29d4 245 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS11240 3f02aa6b107d6cbf4c76cd216edc29d4 245 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 11 245 55.025 T 28-03-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 KEGG: 00340+2.1.1.22 AM348_RS11240 3f02aa6b107d6cbf4c76cd216edc29d4 245 Gene3D G3DSA:3.40.50.150 32 239 2.4E-27 T 28-03-2018 AM348_RS11240 3f02aa6b107d6cbf4c76cd216edc29d4 245 SUPERFAMILY SSF53335 15 172 6.66E-28 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS11240 3f02aa6b107d6cbf4c76cd216edc29d4 245 Pfam PF05175 Methyltransferase small domain 46 130 6.0E-13 T 28-03-2018 IPR007848 Methyltransferase small domain GO:0008168 AM348_RS09780 08958e10564540d214c2f7c75e04a20e 107 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 23 1.1E-4 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09780 08958e10564540d214c2f7c75e04a20e 107 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09780 08958e10564540d214c2f7c75e04a20e 107 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 2.7E-6 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09780 08958e10564540d214c2f7c75e04a20e 107 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 33 104 5.1E-25 T 28-03-2018 IPR022204 Prepilin peptidase dependent protein C AM348_RS14410 8ff1f4ea87d4752d82d1e6f99a360aaa 155 Pfam PF03748 Flagellar basal body-associated protein FliL 57 153 1.7E-19 T 28-03-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 AM348_RS01825 f129bcb29c4c7654fc956ea39181c4e7 205 SMART SM00749 64 127 1.7E-12 T 28-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM348_RS01825 f129bcb29c4c7654fc956ea39181c4e7 205 SMART SM00749 143 205 1.5E-10 T 28-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM348_RS01825 f129bcb29c4c7654fc956ea39181c4e7 205 Pfam PF04972 BON domain 59 126 4.1E-20 T 28-03-2018 IPR007055 BON domain AM348_RS01825 f129bcb29c4c7654fc956ea39181c4e7 205 Pfam PF04972 BON domain 139 203 6.5E-20 T 28-03-2018 IPR007055 BON domain AM348_RS23310 73b0334318d623225776006e1977d25b 325 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 319 32.663 T 28-03-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AM348_RS23310 73b0334318d623225776006e1977d25b 325 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 137 1.6E-22 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS23310 73b0334318d623225776006e1977d25b 325 Pfam PF02769 AIR synthase related protein, C-terminal domain 150 299 9.6E-9 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS23310 73b0334318d623225776006e1977d25b 325 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 1.3E-118 T 28-03-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AM348_RS23310 73b0334318d623225776006e1977d25b 325 PIRSF PIRSF005303 1 322 4.5E-89 T 28-03-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 AM348_RS23310 73b0334318d623225776006e1977d25b 325 SUPERFAMILY SSF56042 143 307 1.14E-38 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS23310 73b0334318d623225776006e1977d25b 325 Gene3D G3DSA:3.30.1330.10 1 142 4.6E-36 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS23310 73b0334318d623225776006e1977d25b 325 Gene3D G3DSA:3.90.650.10 145 322 1.4E-47 T 28-03-2018 IPR010918 AIR synthase-related protein, C-terminal domain AM348_RS23310 73b0334318d623225776006e1977d25b 325 SUPERFAMILY SSF55326 4 138 2.09E-35 T 28-03-2018 IPR016188 PurM-like, N-terminal domain AM348_RS21115 9143d0549333d26fdd8cf3be4b84d612 271 SUPERFAMILY SSF56784 1 262 3.28E-64 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21115 9143d0549333d26fdd8cf3be4b84d612 271 ProSitePatterns PS01229 Hypothetical cof family signature 2. 213 235 - T 28-03-2018 AM348_RS21115 9143d0549333d26fdd8cf3be4b84d612 271 Gene3D G3DSA:3.40.50.1000 1 268 4.8E-35 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21115 9143d0549333d26fdd8cf3be4b84d612 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 5.9E-53 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21115 9143d0549333d26fdd8cf3be4b84d612 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 2.0E-63 T 28-03-2018 IPR000150 Cof family GO:0016787 AM348_RS21115 9143d0549333d26fdd8cf3be4b84d612 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 232 1.3E-20 T 28-03-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 AM348_RS21295 8cfec61991c04c795679e3d022dcdfc1 320 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 21 295 3.6E-15 T 28-03-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD AM348_RS12785 2d8827d3735561204f88c59f39149624 396 Gene3D G3DSA:1.20.1250.20 2 195 1.7E-30 T 28-03-2018 AM348_RS12785 2d8827d3735561204f88c59f39149624 396 Pfam PF07690 Major Facilitator Superfamily 14 336 5.1E-37 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS12785 2d8827d3735561204f88c59f39149624 396 Gene3D G3DSA:1.20.1250.20 200 386 3.5E-23 T 28-03-2018 AM348_RS12785 2d8827d3735561204f88c59f39149624 396 SUPERFAMILY SSF103473 1 384 9.55E-58 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS16925 53fc0c51f017b53eea6c7cc3621314a2 98 Gene3D G3DSA:3.30.50.20 21 96 1.6E-26 T 28-03-2018 AM348_RS16925 53fc0c51f017b53eea6c7cc3621314a2 98 Pfam PF07102 Protein of unknown function (DUF1364) 5 96 2.7E-40 T 28-03-2018 IPR010774 Protein of unknown function DUF1364 AM348_RS08515 03952c035d6a0b727c938ad35d1cb5a1 226 Gene3D G3DSA:1.10.10.10 70 195 7.6E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08515 03952c035d6a0b727c938ad35d1cb5a1 226 Pfam PF03551 Transcriptional regulator PadR-like family 86 155 5.5E-15 T 28-03-2018 IPR005149 Transcription regulator PadR, N-terminal AM348_RS08515 03952c035d6a0b727c938ad35d1cb5a1 226 SUPERFAMILY SSF46785 82 203 2.42E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10650 5049b3c7234c81f773b752c4770da73c 149 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 8 141 2.0E-68 T 28-03-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 AM348_RS10650 5049b3c7234c81f773b752c4770da73c 149 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 144 34.159 T 28-03-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 AM348_RS10650 5049b3c7234c81f773b752c4770da73c 149 Pfam PF06610 L-alanine exporter 4 141 4.1E-67 T 28-03-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 153 7.2E-39 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 169 3.6E-83 T 28-03-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 Pfam PF00994 Probable molybdopterin binding domain 14 156 3.6E-33 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 28-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 Gene3D G3DSA:3.40.980.10 3 170 7.0E-36 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 SUPERFAMILY SSF53218 8 168 5.1E-46 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 SMART SM00852 14 158 1.5E-29 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS21320 2b8cb059d1197ef39858dcd05984ef14 170 PIRSF PIRSF006443 1 166 1.3E-62 T 28-03-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 AM348_RS05650 9f9a2b3ad4e0be9439b8b9fa6edd2272 101 SUPERFAMILY SSF54909 7 99 2.97E-26 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS05650 9f9a2b3ad4e0be9439b8b9fa6edd2272 101 Gene3D G3DSA:3.30.70.100 1 95 9.3E-20 T 28-03-2018 AM348_RS05650 9f9a2b3ad4e0be9439b8b9fa6edd2272 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 79 5.2E-13 T 28-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 Gene3D G3DSA:3.40.1010.10 2 147 3.4E-23 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 231 3.3E-80 T 28-03-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 94 126 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 SUPERFAMILY SSF53790 1 235 4.84E-42 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 28-03-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 210 5.1E-44 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14135 5e73c51462a3215aaafb8177257ddc3f 237 PIRSF PIRSF036427 1 236 2.5E-74 T 28-03-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 AM348_RS12245 fe265eb9df993d3c0bc6f5dccd8cdedf 343 Pfam PF01112 Asparaginase 31 342 4.5E-121 T 28-03-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 AM348_RS12245 fe265eb9df993d3c0bc6f5dccd8cdedf 343 Gene3D G3DSA:3.60.20.30 211 343 3.3E-49 T 28-03-2018 AM348_RS12245 fe265eb9df993d3c0bc6f5dccd8cdedf 343 SUPERFAMILY SSF56235 29 180 9.39E-99 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS12245 fe265eb9df993d3c0bc6f5dccd8cdedf 343 SUPERFAMILY SSF56235 208 342 9.39E-99 T 28-03-2018 IPR029055 Nucleophile aminohydrolases, N-terminal AM348_RS05700 7debdb5320f1154f2555fd05246b209d 96 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 17 64 2.7E-15 T 28-03-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 AM348_RS05700 7debdb5320f1154f2555fd05246b209d 96 Gene3D G3DSA:2.10.260.10 31 94 3.1E-4 T 28-03-2018 AM348_RS00680 39191c30e170ef83ff5e37995815fd8a 129 Gene3D G3DSA:3.10.180.10 1 129 9.7E-27 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS00680 39191c30e170ef83ff5e37995815fd8a 129 SUPERFAMILY SSF54593 3 129 6.85E-32 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS00680 39191c30e170ef83ff5e37995815fd8a 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 2.2E-21 T 28-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 SUPERFAMILY SSF74653 153 222 9.94E-21 T 28-03-2018 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 PRINTS PR01374 Gram-negative bacterial tonB protein signature 195 212 5.6E-39 T 28-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 PRINTS PR01374 Gram-negative bacterial tonB protein signature 155 176 5.6E-39 T 28-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 PRINTS PR01374 Gram-negative bacterial tonB protein signature 176 194 5.6E-39 T 28-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 PRINTS PR01374 Gram-negative bacterial tonB protein signature 91 101 5.6E-39 T 28-03-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 Pfam PF16031 TonB N-terminal region 33 157 5.9E-33 T 28-03-2018 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 161 233 4.5E-20 T 28-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 160 229 5.9E-18 T 28-03-2018 IPR006260 TonB, C-terminal GO:0006810 AM348_RS16360 4727fb02f3820511bb871e65767007c4 239 Gene3D G3DSA:3.30.2420.10 164 239 1.3E-19 T 28-03-2018 AM348_RS01950 17f570c59240b1a8ec0ecef90848972c 453 PIRSF PIRSF002808 24 370 3.3E-38 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS01950 17f570c59240b1a8ec0ecef90848972c 453 PIRSF PIRSF002808 355 451 0.31 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS01950 17f570c59240b1a8ec0ecef90848972c 453 Pfam PF07690 Major Facilitator Superfamily 47 408 2.8E-57 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS01950 17f570c59240b1a8ec0ecef90848972c 453 Gene3D G3DSA:1.20.1250.20 32 233 7.0E-40 T 28-03-2018 AM348_RS01950 17f570c59240b1a8ec0ecef90848972c 453 Gene3D G3DSA:1.20.1250.20 247 452 1.4E-26 T 28-03-2018 AM348_RS01950 17f570c59240b1a8ec0ecef90848972c 453 SUPERFAMILY SSF103473 33 446 5.49E-82 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 Pfam PF00593 TonB dependent receptor 271 751 6.1E-63 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 Gene3D G3DSA:2.40.170.20 194 752 3.1E-92 T 28-03-2018 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 Gene3D G3DSA:2.170.130.10 31 193 8.3E-28 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 180 1.8E-20 T 28-03-2018 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 SUPERFAMILY SSF56935 68 752 4.97E-141 T 28-03-2018 AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 752 2.2E-185 T 28-03-2018 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 47 - T 28-03-2018 IPR010916 TonB box, conserved site AM348_RS00865 a18ac74331c598e5036ec06962bf59b8 752 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 735 752 - T 28-03-2018 IPR010917 TonB-dependent receptor, conserved site AM348_RS22225 351e51931e5100252297f870c50d6fef 268 Gene3D G3DSA:3.90.730.10 30 267 5.4E-34 T 28-03-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AM348_RS22225 351e51931e5100252297f870c50d6fef 268 SUPERFAMILY SSF55895 33 262 6.02E-27 T 28-03-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AM348_RS22225 351e51931e5100252297f870c50d6fef 268 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 75 82 - T 28-03-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AM348_RS22225 351e51931e5100252297f870c50d6fef 268 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 148 159 - T 28-03-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 AM348_RS22225 351e51931e5100252297f870c50d6fef 268 Pfam PF00445 Ribonuclease T2 family 37 238 2.1E-11 T 28-03-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 AM348_RS20610 a68583f33be1643e287d067884873df6 191 SUPERFAMILY SSF52218 1 168 2.64E-31 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS20610 a68583f33be1643e287d067884873df6 191 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 2 169 7.7E-73 T 28-03-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 AM348_RS20610 a68583f33be1643e287d067884873df6 191 Gene3D G3DSA:3.40.50.360 1 180 2.1E-31 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS20610 a68583f33be1643e287d067884873df6 191 Pfam PF03358 NADPH-dependent FMN reductase 1 140 1.1E-34 T 28-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 Gene3D G3DSA:1.10.3680.10 38 178 3.7E-24 T 28-03-2018 IPR029024 TerB-like AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 SUPERFAMILY SSF46565 131 267 2.72E-31 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 Gene3D G3DSA:1.10.287.110 183 269 1.8E-15 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 270 38.972 T 28-03-2018 IPR023749 Co-chaperone DjlA GO:0051087 AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 Pfam PF05099 Tellurite resistance protein TerB 47 170 8.9E-10 T 28-03-2018 IPR007791 Co-chaperone DjlA, N-terminal AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 PRINTS PR00625 DnaJ domain signature 225 240 2.1E-8 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 PRINTS PR00625 DnaJ domain signature 249 269 2.1E-8 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 PRINTS PR00625 DnaJ domain signature 207 225 2.1E-8 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 SMART SM00271 204 269 1.4E-17 T 28-03-2018 IPR001623 DnaJ domain AM348_RS01400 1e66345c036b1f98d05d333f05f8a66a 271 Pfam PF00226 DnaJ domain 208 268 1.7E-11 T 28-03-2018 IPR001623 DnaJ domain AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 216 227 - T 28-03-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 Gene3D G3DSA:1.10.645.10 175 380 1.1E-44 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 36 152 2.7E-25 T 28-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 SUPERFAMILY SSF143243 9 194 6.28E-46 T 28-03-2018 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 SUPERFAMILY SSF56762 193 537 4.97E-109 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 Gene3D G3DSA:1.10.645.10 381 535 7.8E-31 T 28-03-2018 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 87 151 7.0E-25 T 28-03-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 Pfam PF00374 Nickel-dependent hydrogenase 218 286 6.4E-13 T 28-03-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 467 537 5.6E-11 T 28-03-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10375 f5bc3d0d2c6d4dbd5336b9cee1d7af8e 569 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 296 464 1.6E-34 T 28-03-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS03780 958975dfbea3924c21f8df6ae7f506d6 105 PIRSF PIRSF028744 1 101 6.8E-37 T 28-03-2018 IPR014056 Addiction module killer protein, predicted AM348_RS03780 958975dfbea3924c21f8df6ae7f506d6 105 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 3 95 9.2E-38 T 28-03-2018 IPR014056 Addiction module killer protein, predicted AM348_RS15285 4085d29d69007520a844bad4428fe4d1 165 SUPERFAMILY SSF55781 2 149 5.23E-41 T 28-03-2018 IPR029016 GAF domain-like AM348_RS15285 4085d29d69007520a844bad4428fe4d1 165 SMART SM00065 9 161 5.3E-15 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS15285 4085d29d69007520a844bad4428fe4d1 165 Gene3D G3DSA:3.30.450.40 8 155 6.1E-24 T 28-03-2018 IPR029016 GAF domain-like AM348_RS15285 4085d29d69007520a844bad4428fe4d1 165 Pfam PF13185 GAF domain 32 151 6.0E-13 T 28-03-2018 IPR003018 GAF domain GO:0005515 AM348_RS18925 4b840bf7110bf8c5a0aa47d0e678bd81 199 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 5 166 2.0E-34 T 28-03-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AM348_RS18925 4b840bf7110bf8c5a0aa47d0e678bd81 199 PIRSF PIRSF030780 1 199 4.3E-126 T 28-03-2018 IPR016956 Inner membrane protein YdjM AM348_RS19695 f4bbeb1d762ecc02b5b20e1754d8cc03 255 SUPERFAMILY SSF52540 3 227 1.03E-63 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19695 f4bbeb1d762ecc02b5b20e1754d8cc03 255 SMART SM00382 27 215 3.9E-16 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS19695 f4bbeb1d762ecc02b5b20e1754d8cc03 255 Pfam PF00005 ABC transporter 18 166 3.7E-32 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS19695 f4bbeb1d762ecc02b5b20e1754d8cc03 255 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS19695 f4bbeb1d762ecc02b5b20e1754d8cc03 255 Gene3D G3DSA:3.40.50.300 1 237 4.1E-64 T 28-03-2018 AM348_RS10585 eeddd10209db09bb77012d1433907b1c 245 Pfam PF03591 AzlC protein 24 165 2.8E-38 T 28-03-2018 IPR011606 Branched-chain amino acid transport, permease AM348_RS21590 bb24ed3584c836f9425c419bbc274079 522 PIRSF PIRSF006446 1 328 1.9E-112 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS21590 bb24ed3584c836f9425c419bbc274079 522 PIRSF PIRSF006446 342 522 1.7E-30 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS21590 bb24ed3584c836f9425c419bbc274079 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 7.5E-174 T 28-03-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 AM348_RS23000 06469577a6736e93492be131111ca546 125 PIRSF PIRSF016789 2 123 1.2E-50 T 28-03-2018 IPR007401 Protein of unknown function DUF454 AM348_RS23000 06469577a6736e93492be131111ca546 125 Pfam PF04304 Protein of unknown function (DUF454) 3 116 7.7E-42 T 28-03-2018 IPR007401 Protein of unknown function DUF454 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 Gene3D G3DSA:2.30.40.10 8 76 1.6E-14 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 Gene3D G3DSA:3.20.20.140 77 339 2.3E-116 T 28-03-2018 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 SUPERFAMILY SSF51556 62 345 3.62E-73 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 Pfam PF01979 Amidohydrolase family 254 374 3.3E-6 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 PIRSF PIRSF001238 7 387 1.1E-153 T 28-03-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 9 387 1.9E-160 T 28-03-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 SUPERFAMILY SSF51338 9 61 1.12E-20 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS11725 1427af78306a77678760f4cec90cb9a4 387 SUPERFAMILY SSF51338 345 386 1.12E-20 T 28-03-2018 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 AM348_RS14605 594581c8f0e0f5d6257a555bff5b6b81 346 SUPERFAMILY SSF109709 124 201 1.83E-10 T 28-03-2018 AM348_RS14605 594581c8f0e0f5d6257a555bff5b6b81 346 Gene3D G3DSA:3.90.1530.10 10 122 1.9E-4 T 28-03-2018 AM348_RS21675 63ce2ae88a15012ae00449ad37c496f7 258 Gene3D G3DSA:3.20.20.150 1 258 1.1E-49 T 28-03-2018 AM348_RS21675 63ce2ae88a15012ae00449ad37c496f7 258 PIRSF PIRSF006241 1 258 3.0E-87 T 28-03-2018 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 AM348_RS21675 63ce2ae88a15012ae00449ad37c496f7 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 1.4E-26 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS21675 63ce2ae88a15012ae00449ad37c496f7 258 SUPERFAMILY SSF51658 1 258 3.73E-72 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS13290 671ca9c8748019d94be0fd4c63d70a7a 479 Pfam PF02321 Outer membrane efflux protein 294 445 2.5E-13 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS13290 671ca9c8748019d94be0fd4c63d70a7a 479 Pfam PF02321 Outer membrane efflux protein 67 266 7.9E-21 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS13290 671ca9c8748019d94be0fd4c63d70a7a 479 SUPERFAMILY SSF56954 4 476 6.93E-79 T 28-03-2018 AM348_RS13290 671ca9c8748019d94be0fd4c63d70a7a 479 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 475 1.0E-84 T 28-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM348_RS13290 671ca9c8748019d94be0fd4c63d70a7a 479 Gene3D G3DSA:1.20.1600.10 23 479 5.3E-69 T 28-03-2018 AM348_RS13425 a6511a0adc0cf0f95f004c02a197ca9b 266 SUPERFAMILY SSF53613 5 265 1.37E-81 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS13425 a6511a0adc0cf0f95f004c02a197ca9b 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 3.4E-94 T 28-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS13425 a6511a0adc0cf0f95f004c02a197ca9b 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 8.1E-107 T 28-03-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS13425 a6511a0adc0cf0f95f004c02a197ca9b 266 Gene3D G3DSA:3.40.1190.20 1 266 2.4E-66 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS22505 a0e9d72ff3660dcd846c401dccaaa0f2 414 SUPERFAMILY SSF82689 321 396 1.96E-5 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS22505 a0e9d72ff3660dcd846c401dccaaa0f2 414 Gene3D G3DSA:2.30.30.60 201 251 9.4E-10 T 28-03-2018 AM348_RS22505 a0e9d72ff3660dcd846c401dccaaa0f2 414 SUPERFAMILY SSF50182 186 252 4.58E-12 T 28-03-2018 IPR010920 LSM domain AM348_RS22505 a0e9d72ff3660dcd846c401dccaaa0f2 414 Pfam PF00924 Mechanosensitive ion channel 142 396 6.4E-69 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS17130 ab2100b81dff1a39b3ac9d311bc3942c 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 247 6.9E-12 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17130 ab2100b81dff1a39b3ac9d311bc3942c 268 SUPERFAMILY SSF161098 5 257 1.07E-48 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17130 ab2100b81dff1a39b3ac9d311bc3942c 268 Gene3D G3DSA:1.10.3720.10 7 262 6.4E-36 T 28-03-2018 AM348_RS06830 2d513d8151d2e7d50f052aecf85d4f42 379 SUPERFAMILY SSF141452 6 148 2.48E-27 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS06830 2d513d8151d2e7d50f052aecf85d4f42 379 Pfam PF05638 Type VI secretion system effector, Hcp 28 139 3.5E-12 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS06830 2d513d8151d2e7d50f052aecf85d4f42 379 Gene3D G3DSA:2.30.110.20 2 149 7.3E-32 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS06830 2d513d8151d2e7d50f052aecf85d4f42 379 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 147 7.5E-36 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS03660 4299bc4d73cc0f795013caca30950e97 80 ProDom PD865006 YJBE PRECURSOR SIGNAL MEMBRANE OUTER EXPORTED 1 28 1.0E-6 T 28-03-2018 AM348_RS03660 4299bc4d73cc0f795013caca30950e97 80 Pfam PF11106 Exopolysaccharide production protein YjbE 1 79 2.1E-28 T 28-03-2018 IPR025858 Exopolysaccharide production protein YjbE AM348_RS20690 ef7b5fb06e42f5ace1ef9c0b1ba007f3 234 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 234 48.53 T 28-03-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 AM348_RS20690 ef7b5fb06e42f5ace1ef9c0b1ba007f3 234 Pfam PF04288 MukE-like family 10 230 2.3E-125 T 28-03-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 Gene3D G3DSA:3.40.50.1000 77 217 1.4E-19 T 28-03-2018 IPR023214 HAD-like domain AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 1.8E-6 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 Gene3D G3DSA:1.10.150.240 19 76 2.0E-18 T 28-03-2018 IPR023198 Phosphoglycolate phosphatase, domain 2 AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 183 1.5E-11 T 28-03-2018 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 183 7.8E-21 T 28-03-2018 IPR023214 HAD-like domain AM348_RS05330 3d932bd5f9615ea07560ce8c6f0d2ce9 221 SUPERFAMILY SSF56784 4 212 1.49E-46 T 28-03-2018 IPR023214 HAD-like domain AM348_RS22520 0586aa65bc7111db974f28b10e746ec6 342 SUPERFAMILY SSF51658 8 323 5.8E-59 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS22520 0586aa65bc7111db974f28b10e746ec6 342 Pfam PF01261 Xylose isomerase-like TIM barrel 29 279 5.4E-36 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS22520 0586aa65bc7111db974f28b10e746ec6 342 Gene3D G3DSA:3.20.20.150 11 342 1.1E-46 T 28-03-2018 AM348_RS22520 0586aa65bc7111db974f28b10e746ec6 342 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 8.5E-21 T 28-03-2018 IPR011418 AP endonuclease, family 2, C-terminal AM348_RS17870 c3807fef8e7761debeba7535c4561892 204 Gene3D G3DSA:1.10.3480.10 1 204 4.4E-56 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS17870 c3807fef8e7761debeba7535c4561892 204 SUPERFAMILY SSF89155 3 201 6.28E-57 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS17870 c3807fef8e7761debeba7535c4561892 204 Hamap MF_00940 Tat proofreading chaperone DmsD [dmsD]. 5 204 42.3 T 28-03-2018 IPR028611 Tat proofreading chaperone DmsD GO:0005048 AM348_RS17870 c3807fef8e7761debeba7535c4561892 204 Pfam PF02613 Nitrate reductase delta subunit 49 163 4.3E-22 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS17870 c3807fef8e7761debeba7535c4561892 204 PIRSF PIRSF004690 2 204 4.2E-63 T 28-03-2018 IPR026269 Tat proofreading chaperone DmsD-type AM348_RS21555 45af0c52c09d31c1824477769ed7bcac 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 3.2E-24 T 28-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 AM348_RS21555 45af0c52c09d31c1824477769ed7bcac 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 4.4E-39 T 28-03-2018 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 AM348_RS21555 45af0c52c09d31c1824477769ed7bcac 142 Gene3D G3DSA:3.20.20.70 4 140 6.6E-4 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS18335 8b05dd356ec0602b0a9b7e36e9e143ff 164 Gene3D G3DSA:3.90.420.10 9 164 9.9E-22 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS18335 8b05dd356ec0602b0a9b7e36e9e143ff 164 SUPERFAMILY SSF56524 42 160 7.46E-18 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS18335 8b05dd356ec0602b0a9b7e36e9e143ff 164 Pfam PF00174 Oxidoreductase molybdopterin binding domain 67 138 1.6E-5 T 28-03-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 AM348_RS12415 9d08130db333675496d7bfc151c69820 333 PIRSF PIRSF020588 1 333 2.3E-166 T 28-03-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 AM348_RS12485 085d912a46aed1a1852108c63129a1d6 235 SUPERFAMILY SSF161098 17 220 2.88E-36 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS12485 085d912a46aed1a1852108c63129a1d6 235 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 220 4.0E-15 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS12485 085d912a46aed1a1852108c63129a1d6 235 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 5.8E-13 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS12485 085d912a46aed1a1852108c63129a1d6 235 Gene3D G3DSA:1.10.3720.10 6 231 1.4E-31 T 28-03-2018 AM348_RS04465 b8cf908bca11c86e1e9edcbd8109f030 182 Gene3D G3DSA:2.60.120.10 72 182 5.3E-14 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS04465 b8cf908bca11c86e1e9edcbd8109f030 182 Pfam PF01381 Helix-turn-helix 15 64 2.3E-12 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS04465 b8cf908bca11c86e1e9edcbd8109f030 182 SMART SM00530 11 66 2.6E-11 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS04465 b8cf908bca11c86e1e9edcbd8109f030 182 Gene3D G3DSA:1.10.260.40 2 71 1.8E-16 T 28-03-2018 AM348_RS04465 b8cf908bca11c86e1e9edcbd8109f030 182 SUPERFAMILY SSF51182 59 178 4.15E-20 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS04465 b8cf908bca11c86e1e9edcbd8109f030 182 SUPERFAMILY SSF47413 5 72 2.56E-15 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS01515 750d9aed22b7c028ad070ff440d4510b 261 Gene3D G3DSA:1.10.12.10 215 261 1.0E-17 T 28-03-2018 IPR014748 Crontonase, C-terminal AM348_RS01515 750d9aed22b7c028ad070ff440d4510b 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 28-03-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 AM348_RS01515 750d9aed22b7c028ad070ff440d4510b 261 SUPERFAMILY SSF52096 2 261 8.5E-80 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS01515 750d9aed22b7c028ad070ff440d4510b 261 Hamap MF_01051 Carnitinyl-CoA dehydratase [caiD]. 1 261 70.561 T 28-03-2018 IPR022852 Carnitinyl-CoA dehydratase GO:0016836 AM348_RS01515 750d9aed22b7c028ad070ff440d4510b 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 260 1.5E-83 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS01515 750d9aed22b7c028ad070ff440d4510b 261 Gene3D G3DSA:3.90.226.10 4 214 2.1E-66 T 28-03-2018 AM348_RS12020 7bd15dde25564849dcb1e7411a7872be 253 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 9 249 29.202 T 28-03-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 AM348_RS12020 7bd15dde25564849dcb1e7411a7872be 253 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 15 231 7.3E-44 T 28-03-2018 AM348_RS00640 2ed5d841991b82158add093bcff7f146 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 1.1E-40 T 28-03-2018 IPR023370 TsaA-like domain AM348_RS00640 2ed5d841991b82158add093bcff7f146 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 1 149 4.0E-60 T 28-03-2018 IPR023370 TsaA-like domain AM348_RS00640 2ed5d841991b82158add093bcff7f146 235 Gene3D G3DSA:3.30.2310.10 150 231 1.7E-25 T 28-03-2018 AM348_RS00640 2ed5d841991b82158add093bcff7f146 235 Gene3D G3DSA:2.40.30.70 5 149 2.0E-52 T 28-03-2018 IPR023370 TsaA-like domain AM348_RS00640 2ed5d841991b82158add093bcff7f146 235 SUPERFAMILY SSF118196 1 229 1.11E-86 T 28-03-2018 IPR023370 TsaA-like domain AM348_RS00640 2ed5d841991b82158add093bcff7f146 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 28-03-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site AM348_RS06755 340e8b6e1c744e0da1db4e6ebb459833 33 Pfam PF15945 Domain of unknown function (DUF4753) 5 33 1.7E-17 T 28-03-2018 IPR031859 Protein of unknown function DUF4753 AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 162 8.2E-17 T 28-03-2018 AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 54 65 1.1E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 1.1E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 144 1.1E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.1E-7 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 SUPERFAMILY SSF51735 1 198 8.17E-26 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS10720 b0926ff0cfef8ad5508d041e1e3a615f 200 Gene3D G3DSA:3.40.50.720 1 199 4.2E-30 T 28-03-2018 AM348_RS06510 09dee89564240afd474cd21fbb32bc79 491 SUPERFAMILY SSF103473 33 458 1.96E-56 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06510 09dee89564240afd474cd21fbb32bc79 491 Pfam PF07690 Major Facilitator Superfamily 41 374 3.7E-26 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS06510 09dee89564240afd474cd21fbb32bc79 491 Gene3D G3DSA:1.20.1250.20 259 466 1.3E-18 T 28-03-2018 AM348_RS06510 09dee89564240afd474cd21fbb32bc79 491 Gene3D G3DSA:1.20.1250.20 31 229 7.0E-26 T 28-03-2018 AM348_RS19080 6bc7820da1bcc617218e41b290d68227 189 SUPERFAMILY SSF69118 10 181 1.01E-39 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS19080 6bc7820da1bcc617218e41b290d68227 189 Gene3D G3DSA:1.20.1290.10 15 186 8.3E-26 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS19080 6bc7820da1bcc617218e41b290d68227 189 Pfam PF02627 Carboxymuconolactone decarboxylase family 57 126 2.2E-7 T 28-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 SMART SM01240 7 344 1.3E-138 T 28-03-2018 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 3.8E-78 T 28-03-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 SUPERFAMILY SSF51412 6 336 1.57E-99 T 28-03-2018 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 Gene3D G3DSA:3.20.20.70 8 341 2.7E-81 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 PIRSF PIRSF000235 1 347 3.5E-199 T 28-03-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 55.766 T 28-03-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 28-03-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 AM348_RS01145 c4badd0dd0c299f8278c7028103a848a 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 5.1E-210 T 28-03-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 AM348_RS03450 8d02833eb1502d34ad192a59e4114f4e 548 Pfam PF00999 Sodium/hydrogen exchanger family 7 421 1.4E-78 T 28-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM348_RS03450 8d02833eb1502d34ad192a59e4114f4e 548 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 2.1E-249 T 28-03-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 SUPERFAMILY SSF53850 87 297 1.01E-31 T 28-03-2018 AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 Gene3D G3DSA:3.40.190.10 94 175 1.0E-11 T 28-03-2018 AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.7E-17 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 Gene3D G3DSA:1.10.10.10 3 93 1.5E-15 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 Pfam PF03466 LysR substrate binding domain 95 296 4.3E-29 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 Gene3D G3DSA:3.40.190.10 176 268 1.8E-15 T 28-03-2018 AM348_RS05640 8735797557f37f130e6c0140fc8012fc 314 SUPERFAMILY SSF46785 6 116 4.4E-16 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS20000 88df6126b48b974cfd3438c572dc43a6 37 Pfam PF10968 Protein of unknown function (DUF2770) 1 36 8.5E-21 T 28-03-2018 IPR024494 Protein of unknown function DUF2770 AM348_RS20000 88df6126b48b974cfd3438c572dc43a6 37 ProDom PD049682 YCEO INNER MEMBRANE STY1197 1 37 2.0E-10 T 28-03-2018 IPR024494 Protein of unknown function DUF2770 AM348_RS02395 fb6283913527a505e8a0c36cdd1a214b 167 Gene3D G3DSA:3.40.630.30 2 154 1.8E-27 T 28-03-2018 AM348_RS02395 fb6283913527a505e8a0c36cdd1a214b 167 Pfam PF00583 Acetyltransferase (GNAT) family 47 144 1.0E-14 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS02395 fb6283913527a505e8a0c36cdd1a214b 167 SUPERFAMILY SSF55729 10 167 7.72E-32 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 Pfam PF08544 GHMP kinases C terminal 218 264 4.2E-6 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 PIRSF PIRSF010376 1 282 1.5E-84 T 28-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 SUPERFAMILY SSF55060 165 280 2.83E-36 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 Gene3D G3DSA:3.30.70.890 165 283 1.2E-25 T 28-03-2018 IPR013750 GHMP kinase, C-terminal domain AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 282 4.9E-117 T 28-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 SUPERFAMILY SSF54211 1 162 2.05E-49 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 Pfam PF00288 GHMP kinases N terminal domain 91 148 1.1E-11 T 28-03-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 Gene3D G3DSA:3.30.230.10 3 164 4.1E-45 T 28-03-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup AM348_RS15740 80162114d0f7b6e10bab65da7c03abd6 283 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 275 32.274 T 28-03-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 AM348_RS21310 f393c02317f958b792af7ad211214a06 81 Pfam PF02597 ThiS family 4 81 1.9E-22 T 28-03-2018 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 AM348_RS21310 f393c02317f958b792af7ad211214a06 81 Gene3D G3DSA:3.10.20.30 1 81 4.9E-20 T 28-03-2018 IPR012675 Beta-grasp domain AM348_RS21310 f393c02317f958b792af7ad211214a06 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.8E-25 T 28-03-2018 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 AM348_RS21310 f393c02317f958b792af7ad211214a06 81 SUPERFAMILY SSF54285 1 81 4.3E-24 T 28-03-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp AM348_RS16070 8693e797b443b04b1ee134957a873f71 126 Gene3D G3DSA:3.40.190.10 2 119 1.5E-4 T 28-03-2018 AM348_RS10180 a0e04d31bbdf77ad5ac4ff3b91242028 261 Gene3D G3DSA:1.10.10.10 9 115 3.7E-10 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10180 a0e04d31bbdf77ad5ac4ff3b91242028 261 SUPERFAMILY SSF46894 27 107 4.54E-9 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS10180 a0e04d31bbdf77ad5ac4ff3b91242028 261 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 105 2.8E-8 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS10180 a0e04d31bbdf77ad5ac4ff3b91242028 261 SMART SM00862 31 108 1.8E-5 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS18195 b3e9c274ba3d00966d38bdf5443b9ae9 78 Pfam PF07869 Protein of unknown function (DUF1656) 19 70 6.6E-16 T 28-03-2018 IPR012451 Protein of unknown function DUF1656 AM348_RS01610 1311809ad2cdb21661e9000ea5798d2e 388 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 4 386 23.92 T 28-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM348_RS01610 1311809ad2cdb21661e9000ea5798d2e 388 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 7 380 2.0E-195 T 28-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM348_RS01610 1311809ad2cdb21661e9000ea5798d2e 388 Pfam PF06965 Na+/H+ antiporter 1 6 380 3.8E-151 T 28-03-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 AM348_RS01610 1311809ad2cdb21661e9000ea5798d2e 388 Gene3D G3DSA:1.20.1530.10 2 386 1.5E-155 T 28-03-2018 IPR023171 Na/H antiporter domain AM348_RS15980 23c76e989b6c8e317cf221dfa86a422b 306 Gene3D G3DSA:1.10.3720.10 2 294 2.2E-41 T 28-03-2018 AM348_RS15980 23c76e989b6c8e317cf221dfa86a422b 306 SUPERFAMILY SSF161098 89 291 3.38E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS15980 23c76e989b6c8e317cf221dfa86a422b 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 7.4E-39 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 28-03-2018 IPR019844 Cold-shock conserved site AM348_RS03955 0a5b9df719459ee524138779eae83369 70 Gene3D G3DSA:2.40.50.140 4 70 4.0E-29 T 28-03-2018 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.2E-33 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 PIRSF PIRSF002599 1 70 2.9E-25 T 28-03-2018 IPR012156 Cold shock, CspA GO:0003676 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 SMART SM00357 6 70 6.0E-33 T 28-03-2018 IPR011129 Cold shock domain GO:0003676 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 PRINTS PR00050 Cold shock protein signature 43 61 2.2E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 PRINTS PR00050 Cold shock protein signature 7 22 2.2E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 PRINTS PR00050 Cold shock protein signature 28 37 2.2E-18 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS03955 0a5b9df719459ee524138779eae83369 70 SUPERFAMILY SSF50249 3 69 4.46E-26 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS17455 895625151dfe59bab9cc045f55c868d0 235 Pfam PF01144 Coenzyme A transferase 9 218 6.7E-72 T 28-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS17455 895625151dfe59bab9cc045f55c868d0 235 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 20 35 - T 28-03-2018 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS17455 895625151dfe59bab9cc045f55c868d0 235 SMART SM00882 8 219 3.6E-84 T 28-03-2018 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Reactome: R-HSA-77108 AM348_RS17455 895625151dfe59bab9cc045f55c868d0 235 SUPERFAMILY SSF100950 5 227 3.63E-85 T 28-03-2018 AM348_RS17455 895625151dfe59bab9cc045f55c868d0 235 Gene3D G3DSA:3.40.1080.10 1 235 4.7E-93 T 28-03-2018 AM348_RS17455 895625151dfe59bab9cc045f55c868d0 235 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 218 2.0E-73 T 28-03-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 AM348_RS03935 e9819f2ee3c14cfcdfce22dcca120962 252 Pfam PF00899 ThiF family 9 240 9.8E-66 T 28-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM348_RS03935 e9819f2ee3c14cfcdfce22dcca120962 252 Gene3D G3DSA:3.40.50.720 1 245 5.9E-74 T 28-03-2018 AM348_RS03935 e9819f2ee3c14cfcdfce22dcca120962 252 SUPERFAMILY SSF69572 2 245 4.19E-82 T 28-03-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 AM348_RS17095 c1096cf279a8f69f6704adac02107863 336 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 213 4.8E-43 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS17095 c1096cf279a8f69f6704adac02107863 336 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 325 1.4E-98 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 Gene3D G3DSA:1.20.210.10 43 561 8.6E-185 T 28-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 1.4E-134 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 28-03-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 Gene3D G3DSA:1.10.287.70 573 640 1.5E-16 T 28-03-2018 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 28-03-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 8.1E-94 T 28-03-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS23235 9ce4d227987cf90a33695003167ffc2d 663 SUPERFAMILY SSF81442 43 560 1.83E-178 T 28-03-2018 IPR023616 Cytochrome c oxidase-like, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 AM348_RS18240 0cf0cdd5a4af36010ab962b5b930af6f 215 SUPERFAMILY SSF53098 13 207 7.59E-57 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS18240 0cf0cdd5a4af36010ab962b5b930af6f 215 SMART SM00479 18 203 5.2E-39 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS18240 0cf0cdd5a4af36010ab962b5b930af6f 215 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 208 3.5E-113 T 28-03-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AM348_RS18240 0cf0cdd5a4af36010ab962b5b930af6f 215 Gene3D G3DSA:3.30.420.10 9 211 1.3E-30 T 28-03-2018 IPR012337 Ribonuclease H-like domain GO:0003676 AM348_RS18240 0cf0cdd5a4af36010ab962b5b930af6f 215 Hamap MF_00157 Ribonuclease T [rnt]. 1 215 120.441 T 28-03-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 AM348_RS18240 0cf0cdd5a4af36010ab962b5b930af6f 215 Pfam PF00929 Exonuclease 20 194 1.0E-39 T 28-03-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III AM348_RS04480 f3f35014cf30896aefbabef48b872114 70 Gene3D G3DSA:3.30.1660.10 10 70 9.2E-15 T 28-03-2018 IPR025543 Dodecin-like AM348_RS04480 f3f35014cf30896aefbabef48b872114 70 Pfam PF07338 Protein of unknown function (DUF1471) 24 68 9.1E-10 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS04480 f3f35014cf30896aefbabef48b872114 70 SUPERFAMILY SSF159871 2 70 2.22E-14 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS22965 59db070f410dec2e969c960b63a39396 624 SUPERFAMILY SSF110942 510 623 4.45E-35 T 28-03-2018 AM348_RS22965 59db070f410dec2e969c960b63a39396 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 182 1.1E-13 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22965 59db070f410dec2e969c960b63a39396 624 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 25 34 - T 28-03-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM348_RS22965 59db070f410dec2e969c960b63a39396 624 SUPERFAMILY SSF55874 4 214 5.24E-67 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PIRSF PIRSF002583 1 624 1.5E-219 T 28-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM348_RS22965 59db070f410dec2e969c960b63a39396 624 SUPERFAMILY SSF54211 230 485 2.43E-102 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS22965 59db070f410dec2e969c960b63a39396 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 623 32.972 T 28-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM348_RS22965 59db070f410dec2e969c960b63a39396 624 Pfam PF00183 Hsp90 protein 211 622 1.0E-125 T 28-03-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 AM348_RS22965 59db070f410dec2e969c960b63a39396 624 Gene3D G3DSA:3.30.565.10 29 222 8.3E-54 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 75 92 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 120 142 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 26 48 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 190 208 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 172 189 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 5 25 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 PRINTS PR00775 90kDa heat shock protein signature 93 110 1.2E-63 T 28-03-2018 IPR020575 Heat shock protein Hsp90, N-terminal AM348_RS22965 59db070f410dec2e969c960b63a39396 624 SMART SM00387 27 184 2.7E-12 T 28-03-2018 IPR003594 Histidine kinase-like ATPase, C-terminal domain AM348_RS23590 0683f6e98b67fdb6875301c0f151b9dc 276 SUPERFAMILY SSF161098 76 259 3.4E-35 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS23590 0683f6e98b67fdb6875301c0f151b9dc 276 Gene3D G3DSA:1.10.3720.10 14 274 1.5E-31 T 28-03-2018 AM348_RS23590 0683f6e98b67fdb6875301c0f151b9dc 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 269 2.3E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS09930 f6f3361051a1e88ba2ae4446796af6d1 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 452 3.3E-55 T 28-03-2018 IPR021826 Domain of unknown function DUF3412 AM348_RS09930 f6f3361051a1e88ba2ae4446796af6d1 454 Gene3D G3DSA:3.30.1850.10 3 111 6.5E-48 T 28-03-2018 IPR027820 Domain of unknown function DUF4478 AM348_RS09930 f6f3361051a1e88ba2ae4446796af6d1 454 Pfam PF03641 Possible lysine decarboxylase 190 329 2.5E-33 T 28-03-2018 IPR031100 LOG family AM348_RS09930 f6f3361051a1e88ba2ae4446796af6d1 454 SUPERFAMILY SSF102405 119 330 4.73E-42 T 28-03-2018 AM348_RS09930 f6f3361051a1e88ba2ae4446796af6d1 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 2.0E-46 T 28-03-2018 IPR027820 Domain of unknown function DUF4478 AM348_RS09930 f6f3361051a1e88ba2ae4446796af6d1 454 Gene3D G3DSA:3.40.50.450 124 452 8.1E-102 T 28-03-2018 AM348_RS14215 f211893e667e7c8919d3680943e95a6f 347 Gene3D G3DSA:1.10.150.130 59 170 3.6E-17 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS14215 f211893e667e7c8919d3680943e95a6f 347 Pfam PF00589 Phage integrase family 168 320 2.6E-10 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS14215 f211893e667e7c8919d3680943e95a6f 347 Gene3D G3DSA:1.10.443.10 171 324 9.7E-17 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS14215 f211893e667e7c8919d3680943e95a6f 347 SUPERFAMILY SSF56349 63 321 1.38E-47 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS09940 fb5d44c10ae04292d934136f84c275ea 181 Hamap MF_01104 Protein Syd [syd]. 3 181 35.073 T 28-03-2018 IPR009948 Syd GO:0009898 AM348_RS09940 fb5d44c10ae04292d934136f84c275ea 181 Pfam PF07348 Syd protein (SUKH-2) 7 179 2.2E-70 T 28-03-2018 IPR009948 Syd GO:0009898 AM348_RS10100 bd8e10fc61dd7e1fc90ca610cd76e8d0 201 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 10 193 2.0E-87 T 28-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AM348_RS10100 bd8e10fc61dd7e1fc90ca610cd76e8d0 201 Gene3D G3DSA:3.40.50.300 23 201 4.2E-48 T 28-03-2018 AM348_RS10100 bd8e10fc61dd7e1fc90ca610cd76e8d0 201 SUPERFAMILY SSF52540 19 192 3.66E-36 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS10100 bd8e10fc61dd7e1fc90ca610cd76e8d0 201 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 26 197 38.919 T 28-03-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 AM348_RS10100 bd8e10fc61dd7e1fc90ca610cd76e8d0 201 Pfam PF01583 Adenylylsulphate kinase 27 179 3.4E-73 T 28-03-2018 AM348_RS17595 a2a3a8d9821e2db430bdaa38b9f19ba7 734 Gene3D G3DSA:1.20.120.20 252 731 3.2E-4 T 28-03-2018 AM348_RS17595 a2a3a8d9821e2db430bdaa38b9f19ba7 734 Gene3D G3DSA:3.40.50.300 5 251 4.0E-7 T 28-03-2018 AM348_RS17595 a2a3a8d9821e2db430bdaa38b9f19ba7 734 SUPERFAMILY SSF52540 40 262 1.14E-8 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 SUPERFAMILY SSF53383 27 484 2.15E-115 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 Gene3D G3DSA:3.40.640.10 92 370 1.1E-57 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 Gene3D G3DSA:1.20.1650.10 5 80 2.9E-15 T 28-03-2018 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 103 121 2.4E-5 T 28-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 122 141 2.4E-5 T 28-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 355 370 2.4E-5 T 28-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 398 417 2.4E-5 T 28-03-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 80 416 6.2E-63 T 28-03-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 AM348_RS15725 d9aead89857ee6b83f895624d4d51864 487 Gene3D G3DSA:3.90.1150.10 371 485 9.3E-27 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS16180 69a0f0825b50183b17b45af499b4e21e 177 Pfam PF10721 Protein of unknown function (DUF2514) 8 162 4.8E-43 T 28-03-2018 IPR019659 Protein of unknown function DUF2514 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 Pfam PF01979 Amidohydrolase family 15 307 8.6E-22 T 28-03-2018 IPR006680 Amidohydrolase-related GO:0016787 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 2.6E-162 T 28-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 28-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 ProSitePatterns PS00482 Dihydroorotase signature 1. 15 23 - T 28-03-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 61.234 T 28-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 Gene3D G3DSA:3.20.20.140 14 348 1.7E-57 T 28-03-2018 AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 SUPERFAMILY SSF51556 8 347 1.93E-148 T 28-03-2018 IPR032466 Metal-dependent hydrolase AM348_RS19980 370f33eb1187d1e232c787b0451e7ece 348 PIRSF PIRSF001237 4 348 3.2E-140 T 28-03-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 AM348_RS08095 7d7ed24ea5487e85d2ed0667501e0d50 110 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 3.7E-43 T 28-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM348_RS08095 7d7ed24ea5487e85d2ed0667501e0d50 110 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 3.7E-43 T 28-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM348_RS08095 7d7ed24ea5487e85d2ed0667501e0d50 110 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 3.7E-43 T 28-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM348_RS08095 7d7ed24ea5487e85d2ed0667501e0d50 110 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 3.7E-43 T 28-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM348_RS08095 7d7ed24ea5487e85d2ed0667501e0d50 110 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 73 6.0E-27 T 28-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM348_RS08095 7d7ed24ea5487e85d2ed0667501e0d50 110 Pfam PF03840 Preprotein translocase SecG subunit 5 72 6.5E-22 T 28-03-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 278 289 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 Gene3D G3DSA:3.30.70.20 254 281 2.5E-9 T 28-03-2018 AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 Gene3D G3DSA:3.30.70.20 282 321 8.5E-4 T 28-03-2018 AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 SUPERFAMILY SSF54862 109 129 6.8E-24 T 28-03-2018 AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 SUPERFAMILY SSF54862 181 291 6.8E-24 T 28-03-2018 AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 Pfam PF12801 4Fe-4S binding domain 97 142 8.0E-14 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 Pfam PF12801 4Fe-4S binding domain 203 246 2.2E-8 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS00140 15ee787f57aea94cdee25904ffd23ac2 364 Gene3D G3DSA:3.30.70.20 221 253 8.9E-11 T 28-03-2018 AM348_RS02730 11f0187d49dbb3e4d14fa18dbceb380f 469 ProSitePatterns PS00218 Amino acid permeases signature. 52 82 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS02730 11f0187d49dbb3e4d14fa18dbceb380f 469 Pfam PF00324 Amino acid permease 27 465 1.3E-123 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS02730 11f0187d49dbb3e4d14fa18dbceb380f 469 PIRSF PIRSF006060 1 469 2.2E-70 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS04855 60dcf36c022cdf9b0a0cfd2902e0a626 206 Pfam PF01810 LysE type translocator 14 202 6.1E-47 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS04855 60dcf36c022cdf9b0a0cfd2902e0a626 206 PIRSF PIRSF006324 1 205 9.9E-54 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS04855 60dcf36c022cdf9b0a0cfd2902e0a626 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 19 200 7.7E-56 T 28-03-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 Gene3D G3DSA:3.20.70.20 35 127 4.5E-30 T 28-03-2018 AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 Pfam PF01228 Glycine radical 16 108 1.0E-22 T 28-03-2018 IPR001150 Glycine radical domain GO:0003824|GO:0008152 AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 28-03-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 3.2E-70 T 28-03-2018 IPR011140 Autonomous glycyl radical cofactor GrcA AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 42.742 T 28-03-2018 IPR011140 Autonomous glycyl radical cofactor GrcA AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 PIRSF PIRSF000378 2 127 3.7E-56 T 28-03-2018 IPR011140 Autonomous glycyl radical cofactor GrcA AM348_RS11220 166c471e9e68e0aa4feb21b8ad50bef0 127 SUPERFAMILY SSF51998 65 126 3.66E-24 T 28-03-2018 AM348_RS00200 a9fc7476bfa06c88e6c4cbb0280f7a80 248 SUPERFAMILY SSF53335 10 244 1.26E-43 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS00200 a9fc7476bfa06c88e6c4cbb0280f7a80 248 PIRSF PIRSF034653 1 248 1.1E-110 T 28-03-2018 IPR017031 Predicted S-adenosyl-L-methionine dependent methyltransferase, YjhP-type AM348_RS00200 a9fc7476bfa06c88e6c4cbb0280f7a80 248 Gene3D G3DSA:3.40.50.150 1 248 5.2E-39 T 28-03-2018 AM348_RS00200 a9fc7476bfa06c88e6c4cbb0280f7a80 248 Pfam PF13847 Methyltransferase domain 37 150 1.3E-11 T 28-03-2018 IPR025714 Methyltransferase domain AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 Gene3D G3DSA:3.40.50.1970 1 185 4.2E-41 T 28-03-2018 AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 SUPERFAMILY SSF56796 7 382 3.66E-120 T 28-03-2018 AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 371 1.5E-112 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 378 1.6E-193 T 28-03-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS09905 3d33139a8b0390b2cd0c2f657217613e 382 Gene3D G3DSA:1.20.1090.10 186 382 3.4E-60 T 28-03-2018 AM348_RS07840 ba292979c81a42204c15c760beb895ba 455 Pfam PF03606 C4-dicarboxylate anaerobic carrier 2 454 1.3E-118 T 28-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AM348_RS07840 ba292979c81a42204c15c760beb895ba 455 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 444 5.1E-187 T 28-03-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 PRINTS PR00783 Major intrinsic protein family signature 167 189 2.6E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 PRINTS PR00783 Major intrinsic protein family signature 3 22 2.6E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 PRINTS PR00783 Major intrinsic protein family signature 43 67 2.6E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 PRINTS PR00783 Major intrinsic protein family signature 80 99 2.6E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 PRINTS PR00783 Major intrinsic protein family signature 137 155 2.6E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 PRINTS PR00783 Major intrinsic protein family signature 206 226 2.6E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 Hamap MF_01146 Aquaporin Z [aqpZ]. 2 230 36.004 T 28-03-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 Gene3D G3DSA:1.20.1080.10 1 231 5.6E-72 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 223 4.8E-63 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 SUPERFAMILY SSF81338 2 228 9.94E-69 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 Pfam PF00230 Major intrinsic protein 2 223 8.2E-51 T 28-03-2018 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS13555 dd52998a2248b42cec07b90d55c3ed36 231 ProSitePatterns PS00221 MIP family signature. 61 69 - T 28-03-2018 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 AM348_RS19310 a15cdd1426e7306a5298e95d02619a21 264 Gene3D G3DSA:3.40.50.300 1 260 1.3E-44 T 28-03-2018 AM348_RS19310 a15cdd1426e7306a5298e95d02619a21 264 Pfam PF00005 ABC transporter 26 175 2.3E-20 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS19310 a15cdd1426e7306a5298e95d02619a21 264 SMART SM00382 35 223 3.8E-7 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS19310 a15cdd1426e7306a5298e95d02619a21 264 SUPERFAMILY SSF52540 23 235 4.96E-43 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS04485 6e03166d3a6e1159962d2b605f4445f3 173 Gene3D G3DSA:1.10.10.10 87 173 2.1E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04485 6e03166d3a6e1159962d2b605f4445f3 173 Gene3D G3DSA:2.60.120.10 3 86 1.4E-5 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS04485 6e03166d3a6e1159962d2b605f4445f3 173 SUPERFAMILY SSF51206 12 124 1.7E-13 T 28-03-2018 IPR018490 Cyclic nucleotide-binding-like AM348_RS03155 dfe1a2d2f0914370a06277d1d17d8152 84 Pfam PF04193 PQ loop repeat 5 56 3.2E-10 T 28-03-2018 IPR006603 PQ-loop repeat AM348_RS20105 ba004b8bcfa5a384d4700d28d6ca2537 277 Pfam PF03783 Curli production assembly/transport component CsgG 41 255 7.9E-80 T 28-03-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 AM348_RS20105 ba004b8bcfa5a384d4700d28d6ca2537 277 Gene3D G3DSA:3.40.50.10070 45 210 1.1E-17 T 28-03-2018 AM348_RS19600 bbdc66b5b032bfba6b7fc6262101d8a7 251 SUPERFAMILY SSF47240 8 245 1.54E-80 T 28-03-2018 IPR009078 Ferritin-like superfamily AM348_RS19600 bbdc66b5b032bfba6b7fc6262101d8a7 251 Pfam PF05138 Phenylacetic acid catabolic protein 5 251 2.5E-93 T 28-03-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 AM348_RS19600 bbdc66b5b032bfba6b7fc6262101d8a7 251 PIRSF PIRSF037834 1 251 5.9E-99 T 28-03-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 AM348_RS19600 bbdc66b5b032bfba6b7fc6262101d8a7 251 Gene3D G3DSA:1.20.1260.10 4 251 2.6E-73 T 28-03-2018 IPR012347 Ferritin-related AM348_RS19600 bbdc66b5b032bfba6b7fc6262101d8a7 251 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 14 251 2.0E-98 T 28-03-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 AM348_RS05585 275eb94eb5dd330f49cee7a0e40e98e9 459 SUPERFAMILY SSF56935 80 459 9.61E-92 T 28-03-2018 AM348_RS05585 275eb94eb5dd330f49cee7a0e40e98e9 459 Pfam PF02264 LamB porin 82 459 2.7E-79 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS05585 275eb94eb5dd330f49cee7a0e40e98e9 459 Gene3D G3DSA:2.40.170.10 80 459 8.7E-80 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS05585 275eb94eb5dd330f49cee7a0e40e98e9 459 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 356 426 4.0E-4 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS05585 275eb94eb5dd330f49cee7a0e40e98e9 459 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 108 207 1.0E-48 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS18435 c839e0ce334e0e300e4448c536dcbdd0 553 Gene3D G3DSA:2.60.40.10 269 335 0.19 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS18435 c839e0ce334e0e300e4448c536dcbdd0 553 Gene3D G3DSA:2.60.40.1080 363 456 4.1E-8 T 28-03-2018 AM348_RS18435 c839e0ce334e0e300e4448c536dcbdd0 553 SUPERFAMILY SSF49373 365 453 4.63E-17 T 28-03-2018 IPR008964 Invasin/intimin cell-adhesion fragments AM348_RS18435 c839e0ce334e0e300e4448c536dcbdd0 553 Gene3D G3DSA:3.10.100.10 457 551 1.5E-9 T 28-03-2018 IPR016186 C-type lectin-like/link domain AM348_RS18435 c839e0ce334e0e300e4448c536dcbdd0 553 Gene3D G3DSA:3.10.100.10 152 253 0.024 T 28-03-2018 IPR016186 C-type lectin-like/link domain AM348_RS00130 648dd22985a047ba6641c66d67a2310a 210 PIRSF PIRSF006324 1 207 1.2E-52 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS00130 648dd22985a047ba6641c66d67a2310a 210 Pfam PF01810 LysE type translocator 17 206 5.3E-54 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS00130 648dd22985a047ba6641c66d67a2310a 210 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 20 202 4.5E-71 T 28-03-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 AM348_RS06250 d62420f6487387dd5385d14906ae1c14 146 SUPERFAMILY SSF55729 1 126 1.95E-24 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS06250 d62420f6487387dd5385d14906ae1c14 146 Gene3D G3DSA:3.40.630.30 1 143 1.3E-21 T 28-03-2018 AM348_RS06250 d62420f6487387dd5385d14906ae1c14 146 Pfam PF13673 Acetyltransferase (GNAT) domain 45 132 2.3E-15 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS12695 cf686419836c40dacf75f4cf0ea1805c 87 ProDom PD028730 PMRD RESISTANCE POLYMYXIN B ANTIBIOTIC 1 82 4.0E-24 T 28-03-2018 IPR020146 Signal transduction protein PmrD AM348_RS12695 cf686419836c40dacf75f4cf0ea1805c 87 Pfam PF11183 Polymyxin resistance protein PmrD 1 80 1.9E-29 T 28-03-2018 AM348_RS19295 272128906d4058b7272a07536c6ef9a5 216 Pfam PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment 37 216 4.4E-83 T 28-03-2018 IPR015304 ZinT domain GO:0008270 AM348_RS19295 272128906d4058b7272a07536c6ef9a5 216 SUPERFAMILY SSF50814 31 216 1.26E-77 T 28-03-2018 IPR012674 Calycin AM348_RS19295 272128906d4058b7272a07536c6ef9a5 216 Gene3D G3DSA:2.40.128.20 29 216 6.6E-68 T 28-03-2018 IPR012674 Calycin AM348_RS17540 9958e33872adf83d15e949619260b85b 579 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS17540 9958e33872adf83d15e949619260b85b 579 Gene3D G3DSA:3.40.50.300 327 562 7.1E-60 T 28-03-2018 AM348_RS17540 9958e33872adf83d15e949619260b85b 579 Gene3D G3DSA:1.20.1560.10 5 316 4.3E-22 T 28-03-2018 AM348_RS17540 9958e33872adf83d15e949619260b85b 579 SUPERFAMILY SSF52540 319 554 2.09E-64 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS17540 9958e33872adf83d15e949619260b85b 579 SMART SM00382 356 559 7.9E-8 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS17540 9958e33872adf83d15e949619260b85b 579 Pfam PF00005 ABC transporter 347 494 7.4E-30 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS17540 9958e33872adf83d15e949619260b85b 579 SUPERFAMILY SSF90123 13 319 1.1E-41 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS17540 9958e33872adf83d15e949619260b85b 579 Pfam PF00664 ABC transporter transmembrane region 22 279 2.3E-11 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS17540 9958e33872adf83d15e949619260b85b 579 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 16 556 1.2E-221 T 28-03-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 Gene3D G3DSA:1.10.3860.10 1 407 1.3E-106 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 PRINTS PR00173 Glutamate-aspartate symporter signature 80 105 7.1E-38 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 SUPERFAMILY SSF118215 6 403 5.49E-105 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS21625 953dfb69b192448da7d13aa138dac494 434 Pfam PF00375 Sodium:dicarboxylate symporter family 6 402 1.9E-101 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS03740 514e3424675a2cded9d0e70f146ca8d0 274 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 5 273 1.2E-105 T 28-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM348_RS03740 514e3424675a2cded9d0e70f146ca8d0 274 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 4 273 1.4E-142 T 28-03-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 AM348_RS00565 a3300f49294014b14537f79112faa207 266 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 49 252 1.4E-8 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS00565 a3300f49294014b14537f79112faa207 266 Gene3D G3DSA:3.60.10.10 37 260 2.3E-16 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS00565 a3300f49294014b14537f79112faa207 266 Hamap MF_01119 UPF0294 protein YafD [yafD]. 1 260 54.07 T 28-03-2018 IPR022958 Uncharacterised protein family UPF0294 AM348_RS00565 a3300f49294014b14537f79112faa207 266 SUPERFAMILY SSF56219 44 260 2.36E-25 T 28-03-2018 IPR005135 Endonuclease/exonuclease/phosphatase AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 SUPERFAMILY SSF56801 10 451 1.05E-53 T 28-03-2018 AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 Pfam PF00501 AMP-binding enzyme 12 78 3.3E-5 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 Pfam PF00501 AMP-binding enzyme 130 301 7.6E-9 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 Gene3D G3DSA:3.30.300.30 344 453 5.5E-13 T 28-03-2018 AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 Gene3D G3DSA:3.40.50.980 5 82 6.1E-8 T 28-03-2018 AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 Gene3D G3DSA:3.40.50.980 141 294 5.6E-18 T 28-03-2018 AM348_RS06635 5d6b652062cf6e26bad30cb640fd6e5c 453 Gene3D G3DSA:3.40.50.980 83 140 0.0063 T 28-03-2018 AM348_RS15885 be73907c6df47da717a629f77a69f1fe 236 Gene3D G3DSA:1.10.3480.10 4 184 9.0E-32 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS15885 be73907c6df47da717a629f77a69f1fe 236 Pfam PF02613 Nitrate reductase delta subunit 40 155 1.1E-12 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS15885 be73907c6df47da717a629f77a69f1fe 236 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 8 161 1.8E-55 T 28-03-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 AM348_RS15885 be73907c6df47da717a629f77a69f1fe 236 SUPERFAMILY SSF89155 5 163 8.24E-33 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 Pfam PF13432 Tetratricopeptide repeat 113 170 0.0065 T 28-03-2018 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 37.047 T 28-03-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SUPERFAMILY SSF48452 38 132 2.47E-5 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 Gene3D G3DSA:1.25.40.10 122 232 4.0E-18 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SMART SM00028 214 247 0.015 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SMART SM00028 180 213 85.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SMART SM00028 69 102 59.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SMART SM00028 141 174 410.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SMART SM00028 282 315 500.0 T 28-03-2018 IPR019734 Tetratricopeptide repeat GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 Gene3D G3DSA:1.25.40.10 36 121 3.0E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 Pfam PF14559 Tetratricopeptide repeat 191 246 1.6E-5 T 28-03-2018 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 SUPERFAMILY SSF48452 104 293 1.21E-17 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS16500 88473430e6ec02450abd39d659ecd694 389 Gene3D G3DSA:1.25.40.10 233 333 8.1E-11 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS14185 1e3404d26ed85012365be11505aa8500 227 Gene3D G3DSA:3.40.50.300 1 225 2.3E-66 T 28-03-2018 AM348_RS14185 1e3404d26ed85012365be11505aa8500 227 SUPERFAMILY SSF52540 6 223 5.06E-72 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS14185 1e3404d26ed85012365be11505aa8500 227 SMART SM00382 32 216 1.4E-16 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS14185 1e3404d26ed85012365be11505aa8500 227 Pfam PF00005 ABC transporter 24 167 5.1E-33 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS14185 1e3404d26ed85012365be11505aa8500 227 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS20005 f34318cc3c766fd3d454909caf12f7d1 188 SUPERFAMILY SSF81342 5 181 4.79E-39 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS20005 f34318cc3c766fd3d454909caf12f7d1 188 Gene3D G3DSA:1.20.950.20 1 185 3.0E-34 T 28-03-2018 AM348_RS20005 f34318cc3c766fd3d454909caf12f7d1 188 Pfam PF01292 Prokaryotic cytochrome b561 9 180 4.6E-26 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS08205 afc045eda8a77d6f662f89a2f201c009 191 Pfam PF04972 BON domain 124 188 1.3E-17 T 28-03-2018 IPR007055 BON domain AM348_RS08205 afc045eda8a77d6f662f89a2f201c009 191 Pfam PF04972 BON domain 46 113 9.2E-13 T 28-03-2018 IPR007055 BON domain AM348_RS08205 afc045eda8a77d6f662f89a2f201c009 191 SMART SM00749 129 191 9.1E-7 T 28-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM348_RS08205 afc045eda8a77d6f662f89a2f201c009 191 SMART SM00749 51 114 6.4E-12 T 28-03-2018 IPR014004 Transport-associated and nodulation domain, bacteria AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 Gene3D G3DSA:3.30.70.580 7 113 3.7E-36 T 28-03-2018 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 SUPERFAMILY SSF55120 9 265 1.17E-92 T 28-03-2018 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 PIRSF PIRSF001430 9 261 2.1E-77 T 28-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 Pfam PF01416 tRNA pseudouridine synthase 151 253 3.5E-28 T 28-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 Pfam PF01416 tRNA pseudouridine synthase 17 111 1.6E-9 T 28-03-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 11 247 1.9E-81 T 28-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 Gene3D G3DSA:3.30.70.660 114 251 1.7E-37 T 28-03-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS12430 6c4b1a088a581ba85f5cd3af29d3d5fe 270 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 10 252 35.823 T 28-03-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 AM348_RS09725 3e3aa85d7c444b972481aad2e5ae9566 72 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 3.3E-24 T 28-03-2018 IPR010305 Protein of unknown function DUF903 AM348_RS09725 3e3aa85d7c444b972481aad2e5ae9566 72 Gene3D G3DSA:2.30.30.100 21 71 2.2E-26 T 28-03-2018 AM348_RS09725 3e3aa85d7c444b972481aad2e5ae9566 72 SUPERFAMILY SSF50182 21 71 3.11E-18 T 28-03-2018 IPR010920 LSM domain AM348_RS09185 963c933bbe91c2d21714f780a4fabd38 89 SUPERFAMILY SSF111148 1 88 1.44E-39 T 28-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM348_RS09185 963c933bbe91c2d21714f780a4fabd38 89 Pfam PF04362 Bacterial Fe(2+) trafficking 1 87 6.8E-40 T 28-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM348_RS09185 963c933bbe91c2d21714f780a4fabd38 89 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.628 T 28-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM348_RS09185 963c933bbe91c2d21714f780a4fabd38 89 PIRSF PIRSF029827 1 89 4.5E-44 T 28-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM348_RS09185 963c933bbe91c2d21714f780a4fabd38 89 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 2.0E-38 T 28-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM348_RS09185 963c933bbe91c2d21714f780a4fabd38 89 Gene3D G3DSA:1.10.3880.10 2 89 2.7E-40 T 28-03-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 AM348_RS06605 4d1448a34fd283142f1cf987b4654fdc 194 Pfam PF11659 Protein of unknown function (DUF3261) 55 191 6.4E-38 T 28-03-2018 IPR021675 Protein of unknown function DUF3261 AM348_RS12305 31b90638301b6a1970e93edf82404a09 647 Gene3D G3DSA:3.40.50.1110 412 647 2.0E-4 T 28-03-2018 AM348_RS12305 31b90638301b6a1970e93edf82404a09 647 Pfam PF01757 Acyltransferase family 8 332 7.1E-26 T 28-03-2018 IPR002656 Acyltransferase 3 GO:0016747 AM348_RS18070 a55c21bbac5b76e66d55b5ecdaba60d9 390 SUPERFAMILY SSF53383 1 387 3.63E-86 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS18070 a55c21bbac5b76e66d55b5ecdaba60d9 390 Pfam PF00155 Aminotransferase class I and II 30 380 5.5E-55 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS18070 a55c21bbac5b76e66d55b5ecdaba60d9 390 Gene3D G3DSA:3.40.640.10 42 270 1.6E-32 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS18070 a55c21bbac5b76e66d55b5ecdaba60d9 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 386 1.6E-115 T 28-03-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 AM348_RS18070 a55c21bbac5b76e66d55b5ecdaba60d9 390 Gene3D G3DSA:3.90.1150.10 271 390 1.1E-22 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS18250 0583a39de0407548e7bf3a46923512b2 276 Gene3D G3DSA:3.90.1720.10 82 195 5.1E-17 T 28-03-2018 AM348_RS18250 0583a39de0407548e7bf3a46923512b2 276 Gene3D G3DSA:2.30.260.10 196 274 2.8E-18 T 28-03-2018 AM348_RS18250 0583a39de0407548e7bf3a46923512b2 276 SUPERFAMILY SSF54001 138 270 1.01E-40 T 28-03-2018 AM348_RS18250 0583a39de0407548e7bf3a46923512b2 276 Pfam PF00877 NlpC/P60 family 158 268 7.7E-32 T 28-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM348_RS09765 23d1955bbebba93b5c1f2a4ba3e32fb8 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 24 9.8E-5 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09765 23d1955bbebba93b5c1f2a4ba3e32fb8 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09765 23d1955bbebba93b5c1f2a4ba3e32fb8 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 24 6.6E-7 T 28-03-2018 IPR012902 Prokaryotic N-terminal methylation site AM348_RS09765 23d1955bbebba93b5c1f2a4ba3e32fb8 156 SUPERFAMILY SSF54523 8 107 2.83E-7 T 28-03-2018 AM348_RS04580 06623ecc0b1559f491526b7fa4455fd4 441 SUPERFAMILY SSF103473 18 434 2.62E-61 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS04580 06623ecc0b1559f491526b7fa4455fd4 441 Gene3D G3DSA:1.20.1250.20 230 438 1.8E-21 T 28-03-2018 AM348_RS04580 06623ecc0b1559f491526b7fa4455fd4 441 Gene3D G3DSA:1.20.1250.20 9 229 1.6E-23 T 28-03-2018 AM348_RS04580 06623ecc0b1559f491526b7fa4455fd4 441 Pfam PF07690 Major Facilitator Superfamily 54 389 6.7E-29 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS03610 b107882b0ee2fc2264efcd3693d2c07a 451 Pfam PF02264 LamB porin 27 451 6.0E-146 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS03610 b107882b0ee2fc2264efcd3693d2c07a 451 Gene3D G3DSA:2.40.170.10 25 451 2.0E-160 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS03610 b107882b0ee2fc2264efcd3693d2c07a 451 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 447 0.0 T 28-03-2018 IPR003192 Porin, LamB type GO:0006810|GO:0016020 AM348_RS03610 b107882b0ee2fc2264efcd3693d2c07a 451 SUPERFAMILY SSF56935 25 451 9.16E-151 T 28-03-2018 AM348_RS03610 b107882b0ee2fc2264efcd3693d2c07a 451 Hamap MF_01301 Maltoporin [lamB]. 3 451 43.202 T 28-03-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 AM348_RS03080 a72ecc3ebf808750a1d32aeba42c5655 191 SUPERFAMILY SSF48498 86 179 8.9E-6 T 28-03-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal AM348_RS03080 a72ecc3ebf808750a1d32aeba42c5655 191 Gene3D G3DSA:1.10.10.60 2 53 8.3E-8 T 28-03-2018 AM348_RS03080 a72ecc3ebf808750a1d32aeba42c5655 191 Gene3D G3DSA:1.10.357.10 54 180 8.5E-15 T 28-03-2018 AM348_RS03080 a72ecc3ebf808750a1d32aeba42c5655 191 SUPERFAMILY SSF46689 3 61 1.18E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS07290 238498468468dae806d9bb45eedd62c0 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 28.544 T 28-03-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 AM348_RS07290 238498468468dae806d9bb45eedd62c0 95 SUPERFAMILY SSF75169 1 95 9.16E-31 T 28-03-2018 IPR027396 DsrEFH-like AM348_RS07290 238498468468dae806d9bb45eedd62c0 95 Gene3D G3DSA:3.40.1260.10 1 93 4.0E-23 T 28-03-2018 AM348_RS07290 238498468468dae806d9bb45eedd62c0 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 8.6E-33 T 28-03-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 AM348_RS07290 238498468468dae806d9bb45eedd62c0 95 Pfam PF04077 DsrH like protein 8 91 4.5E-29 T 28-03-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 AM348_RS00425 a4deedbdee7d01dafa251f6400821120 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.187 T 28-03-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 AM348_RS00425 a4deedbdee7d01dafa251f6400821120 152 SUPERFAMILY SSF53271 4 144 1.21E-31 T 28-03-2018 IPR029057 Phosphoribosyltransferase-like AM348_RS00425 a4deedbdee7d01dafa251f6400821120 152 Pfam PF00156 Phosphoribosyl transferase domain 11 144 3.1E-15 T 28-03-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 AM348_RS00425 a4deedbdee7d01dafa251f6400821120 152 Gene3D G3DSA:3.40.50.2020 1 152 1.0E-26 T 28-03-2018 AM348_RS00220 027ccf6b5a901aeb74aba3aec3965858 462 Pfam PF00324 Amino acid permease 27 429 1.9E-38 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS00220 027ccf6b5a901aeb74aba3aec3965858 462 PIRSF PIRSF006060 3 459 3.0E-77 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS03965 e3c04045f8b16ec3c2346cac0d1ec01d 105 Gene3D G3DSA:1.20.58.80 2 100 1.8E-33 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS03965 e3c04045f8b16ec3c2346cac0d1ec01d 105 SUPERFAMILY SSF46973 1 100 2.09E-33 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS03965 e3c04045f8b16ec3c2346cac0d1ec01d 105 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 99 9.1E-32 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS03965 e3c04045f8b16ec3c2346cac0d1ec01d 105 PIRSF PIRSF000699 1 104 3.0E-33 T 28-03-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 AM348_RS17645 5629e534862ee929590de3401cd4a79d 537 SUPERFAMILY SSF82689 422 512 9.29E-9 T 28-03-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 AM348_RS17645 5629e534862ee929590de3401cd4a79d 537 Gene3D G3DSA:2.30.30.60 364 413 3.6E-11 T 28-03-2018 AM348_RS17645 5629e534862ee929590de3401cd4a79d 537 Gene3D G3DSA:3.30.70.100 415 510 3.6E-8 T 28-03-2018 AM348_RS17645 5629e534862ee929590de3401cd4a79d 537 SUPERFAMILY SSF50182 348 412 3.04E-12 T 28-03-2018 IPR010920 LSM domain AM348_RS17645 5629e534862ee929590de3401cd4a79d 537 Pfam PF00924 Mechanosensitive ion channel 303 505 2.8E-29 T 28-03-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 AM348_RS12240 ddd120dc69cf80f5c87b590e010cd406 202 Pfam PF06353 Protein of unknown function (DUF1062) 36 167 3.1E-41 T 28-03-2018 IPR009412 Protein of unknown function DUF1062 AM348_RS12240 ddd120dc69cf80f5c87b590e010cd406 202 PIRSF PIRSF021719 1 201 3.5E-71 T 28-03-2018 IPR009412 Protein of unknown function DUF1062 AM348_RS16955 c52890be2b95bcde50bdaa827d8c4902 159 Gene3D G3DSA:3.90.1720.10 4 145 1.5E-8 T 28-03-2018 AM348_RS16955 c52890be2b95bcde50bdaa827d8c4902 159 TIGRFAM TIGR02594 TIGR02594: TIGR02594 family protein 6 136 2.2E-40 T 28-03-2018 IPR013423 Conserved hypothetical protein CHP02594 AM348_RS12055 ebb4656beea5ad8c407a8c3eb8c040a4 131 Pfam PF03625 Domain of unknown function DUF302 39 99 2.0E-17 T 28-03-2018 IPR005180 Domain of unknown function DUF302 AM348_RS12055 ebb4656beea5ad8c407a8c3eb8c040a4 131 SUPERFAMILY SSF103247 8 106 1.44E-28 T 28-03-2018 IPR005180 Domain of unknown function DUF302 AM348_RS12055 ebb4656beea5ad8c407a8c3eb8c040a4 131 Gene3D G3DSA:3.30.310.70 6 123 1.2E-25 T 28-03-2018 IPR005180 Domain of unknown function DUF302 AM348_RS17405 15a7df5e8c079083711e33c09fe0ddf1 92 SUPERFAMILY SSF143011 1 92 1.29E-14 T 28-03-2018 IPR035095 Toxin RelE-like domain AM348_RS17405 15a7df5e8c079083711e33c09fe0ddf1 92 Gene3D G3DSA:3.30.2310.20 1 92 2.7E-26 T 28-03-2018 AM348_RS17405 15a7df5e8c079083711e33c09fe0ddf1 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 92 2.0E-21 T 28-03-2018 IPR007711 Toxin HigB-1 AM348_RS16835 a1959088fff8380d042f1f4d5774336e 108 PIRSF PIRSF025560 1 107 4.2E-43 T 28-03-2018 IPR008309 Uncharacterised conserved protein UCP025560 AM348_RS16835 a1959088fff8380d042f1f4d5774336e 108 Pfam PF07027 Protein of unknown function (DUF1318) 18 107 1.0E-30 T 28-03-2018 IPR008309 Uncharacterised conserved protein UCP025560 AM348_RS22380 b96e7bf1946a1dcdbd89f44f6cd76283 377 Gene3D G3DSA:3.30.1890.10 52 213 6.8E-41 T 28-03-2018 AM348_RS22380 b96e7bf1946a1dcdbd89f44f6cd76283 377 Gene3D G3DSA:1.10.287.210 214 312 2.7E-27 T 28-03-2018 AM348_RS22380 b96e7bf1946a1dcdbd89f44f6cd76283 377 Pfam PF02706 Chain length determinant protein 25 122 1.4E-21 T 28-03-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 AM348_RS22380 b96e7bf1946a1dcdbd89f44f6cd76283 377 SUPERFAMILY SSF160355 64 329 6.28E-83 T 28-03-2018 AM348_RS18355 aae9427b45f138a9b01f74ea1e6bca19 369 Pfam PF01594 AI-2E family transporter 10 338 9.8E-51 T 28-03-2018 IPR002549 Transmembrane protein TqsA-like AM348_RS15355 44ed367f0e4b8f308a15e17f85af235f 206 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 19 203 25.575 T 28-03-2018 IPR022929 Putative manganese efflux pump MntP AM348_RS15355 44ed367f0e4b8f308a15e17f85af235f 206 Pfam PF02659 Putative manganese efflux pump 49 200 1.0E-53 T 28-03-2018 IPR003810 Putative manganese efflux pump AM348_RS07090 fb62d8e8860e389e89e28468801a066f 434 Hamap MF_02021 Cell division protein DamX [damX]. 1 434 25.471 T 28-03-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 AM348_RS07090 fb62d8e8860e389e89e28468801a066f 434 Gene3D G3DSA:3.30.70.1070 353 417 5.1E-5 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS07090 fb62d8e8860e389e89e28468801a066f 434 Pfam PF05036 Sporulation related domain 351 423 4.5E-12 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS07090 fb62d8e8860e389e89e28468801a066f 434 SUPERFAMILY SSF110997 350 414 5.36E-7 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS20925 910de2ad37bedc10c8e9fe287961e674 317 SUPERFAMILY SSF161098 27 309 2.75E-57 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS20925 910de2ad37bedc10c8e9fe287961e674 317 Gene3D G3DSA:1.10.3720.10 30 316 1.8E-43 T 28-03-2018 AM348_RS20925 910de2ad37bedc10c8e9fe287961e674 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 313 6.9E-25 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS18830 644909cb67ea59ba1148abc970f5033b 154 Pfam PF00877 NlpC/P60 family 47 153 1.2E-29 T 28-03-2018 IPR000064 Endopeptidase, NLPC/P60 domain AM348_RS18830 644909cb67ea59ba1148abc970f5033b 154 Gene3D G3DSA:3.90.1720.10 35 154 1.3E-34 T 28-03-2018 AM348_RS18830 644909cb67ea59ba1148abc970f5033b 154 SUPERFAMILY SSF54001 33 154 2.16E-39 T 28-03-2018 AM348_RS11895 4e703ece43cb80691a2758a6f5eccdb4 298 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 69 296 4.2E-79 T 28-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM348_RS11895 4e703ece43cb80691a2758a6f5eccdb4 298 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 60 297 41.0 T 28-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM348_RS11895 4e703ece43cb80691a2758a6f5eccdb4 298 PIRSF PIRSF018982 48 298 2.7E-102 T 28-03-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 AM348_RS19340 2cbc1320c6175ed1c54547e50c72141d 507 SMART SM00052 245 491 4.2E-106 T 28-03-2018 IPR001633 EAL domain AM348_RS19340 2cbc1320c6175ed1c54547e50c72141d 507 SUPERFAMILY SSF141868 250 499 4.97E-75 T 28-03-2018 IPR001633 EAL domain AM348_RS19340 2cbc1320c6175ed1c54547e50c72141d 507 Pfam PF00563 EAL domain 251 486 2.2E-62 T 28-03-2018 IPR001633 EAL domain AM348_RS19340 2cbc1320c6175ed1c54547e50c72141d 507 Gene3D G3DSA:3.20.20.450 247 506 8.2E-78 T 28-03-2018 IPR001633 EAL domain AM348_RS19340 2cbc1320c6175ed1c54547e50c72141d 507 Pfam PF12792 CSS motif domain associated with EAL 38 217 2.8E-16 T 28-03-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain AM348_RS15210 c1e9e568a9ca0707e6cd276ef785844c 117 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 23 115 6.0E-41 T 28-03-2018 IPR025603 YebF/Colicin-M immunity protein AM348_RS15210 c1e9e568a9ca0707e6cd276ef785844c 117 Pfam PF13995 YebF-like protein 28 115 8.2E-41 T 28-03-2018 IPR025603 YebF/Colicin-M immunity protein AM348_RS22595 94070f3f64981b83a68514e625f88c15 430 SUPERFAMILY SSF111369 128 329 3.92E-12 T 28-03-2018 AM348_RS22595 94070f3f64981b83a68514e625f88c15 430 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 208 402 9.5E-36 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS22595 94070f3f64981b83a68514e625f88c15 430 Gene3D G3DSA:2.40.50.100 134 249 4.7E-9 T 28-03-2018 AM348_RS22595 94070f3f64981b83a68514e625f88c15 430 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 118 324 4.9E-61 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS03300 41e3d88d31358aca6ba73ab7eb22c540 184 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 175 34.467 T 28-03-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03300 41e3d88d31358aca6ba73ab7eb22c540 184 Pfam PF13238 AAA domain 5 136 1.1E-7 T 28-03-2018 AM348_RS03300 41e3d88d31358aca6ba73ab7eb22c540 184 SMART SM00072 1 178 2.1E-26 T 28-03-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit AM348_RS03300 41e3d88d31358aca6ba73ab7eb22c540 184 Gene3D G3DSA:3.40.50.300 3 182 3.9E-25 T 28-03-2018 AM348_RS03300 41e3d88d31358aca6ba73ab7eb22c540 184 SUPERFAMILY SSF52540 1 175 3.52E-32 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03300 41e3d88d31358aca6ba73ab7eb22c540 184 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 2 175 1.3E-69 T 28-03-2018 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 Pfam PF00375 Sodium:dicarboxylate symporter family 7 402 1.8E-98 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 5.3E-40 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 Gene3D G3DSA:1.10.3860.10 1 411 9.7E-101 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS15015 03a91176677e1104c7b80ab6bb9fb6c0 419 SUPERFAMILY SSF118215 7 403 1.7E-102 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS19805 f9e586063023b2a8a792c502becd0942 269 Gene3D G3DSA:3.30.470.10 1 110 1.6E-19 T 28-03-2018 AM348_RS19805 f9e586063023b2a8a792c502becd0942 269 Pfam PF01063 Amino-transferase class IV 24 246 4.2E-46 T 28-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM348_RS19805 f9e586063023b2a8a792c502becd0942 269 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 28-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM348_RS19805 f9e586063023b2a8a792c502becd0942 269 Gene3D G3DSA:3.20.10.10 113 256 1.2E-33 T 28-03-2018 AM348_RS19805 f9e586063023b2a8a792c502becd0942 269 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 262 6.8E-111 T 28-03-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 AM348_RS19805 f9e586063023b2a8a792c502becd0942 269 SUPERFAMILY SSF56752 3 262 9.94E-66 T 28-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 Gene3D G3DSA:2.40.30.10 2 98 1.0E-17 T 28-03-2018 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 4.0E-14 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 4.0E-14 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 4.0E-14 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 4.0E-14 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 4.0E-14 T 28-03-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 SUPERFAMILY SSF63380 3 97 2.15E-22 T 28-03-2018 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 2.8E-22 T 28-03-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 SUPERFAMILY SSF52343 100 231 1.44E-36 T 28-03-2018 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 94 2.1E-6 T 28-03-2018 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 AM348_RS04765 c32dcc9acda3dae7533cb174cd1a23aa 233 Gene3D G3DSA:3.40.50.80 99 233 5.0E-25 T 28-03-2018 AM348_RS16630 f2fda8e066f9da3bd4ff9b415bd8ba11 105 TIGRFAM TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE 3 102 2.1E-56 T 28-03-2018 IPR014323 Phage shock protein, PspE KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 AM348_RS16630 f2fda8e066f9da3bd4ff9b415bd8ba11 105 Gene3D G3DSA:3.40.250.10 20 103 2.6E-20 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS16630 f2fda8e066f9da3bd4ff9b415bd8ba11 105 SUPERFAMILY SSF52821 23 95 3.8E-20 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS16630 f2fda8e066f9da3bd4ff9b415bd8ba11 105 Pfam PF00581 Rhodanese-like domain 22 97 4.0E-14 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS16630 f2fda8e066f9da3bd4ff9b415bd8ba11 105 SMART SM00450 7 103 9.5E-14 T 28-03-2018 IPR001763 Rhodanese-like domain AM348_RS06210 5dd824948430ea69cf416efa4c4b898e 236 Pfam PF11254 Protein of unknown function (DUF3053) 14 230 8.6E-93 T 28-03-2018 IPR021413 Protein of unknown function DUF3053 AM348_RS13105 8dee6a5235fd16f994fb290d76dc1474 84 Pfam PF03692 Putative zinc- or iron-chelating domain 2 55 1.7E-5 T 28-03-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein AM348_RS22575 1103a62efaa6c724324d14ab7178b056 78 SUPERFAMILY SSF159871 6 78 7.85E-15 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS22575 1103a62efaa6c724324d14ab7178b056 78 Gene3D G3DSA:3.30.1660.10 16 78 2.1E-15 T 28-03-2018 IPR025543 Dodecin-like AM348_RS22575 1103a62efaa6c724324d14ab7178b056 78 Pfam PF07338 Protein of unknown function (DUF1471) 27 78 7.7E-15 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS16035 04795837775a3fd39c190f6ad887ae99 949 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 773 925 2.4E-7 T 28-03-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain AM348_RS16035 04795837775a3fd39c190f6ad887ae99 949 Pfam PF06630 Enterobacterial exodeoxyribonuclease VIII 4 177 4.8E-39 T 28-03-2018 IPR010584 Exodeoxyribonuclease 8 GO:0051908|GO:0090305 AM348_RS17240 99795c23cdeb8438e2cfe50b2dd7cd42 437 Gene3D G3DSA:3.20.20.30 3 437 5.3E-99 T 28-03-2018 AM348_RS17240 99795c23cdeb8438e2cfe50b2dd7cd42 437 SUPERFAMILY SSF51679 4 431 3.66E-128 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS17240 99795c23cdeb8438e2cfe50b2dd7cd42 437 Pfam PF00296 Luciferase-like monooxygenase 20 378 2.2E-64 T 28-03-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 AM348_RS17240 99795c23cdeb8438e2cfe50b2dd7cd42 437 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 424 5.5E-164 T 28-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AM348_RS17240 99795c23cdeb8438e2cfe50b2dd7cd42 437 PIRSF PIRSF000337 4 437 6.3E-143 T 28-03-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 AM348_RS18615 1507e1bb4231cfaa7d146b0ca52aaf3b 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 42 222 1.2E-19 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS18615 1507e1bb4231cfaa7d146b0ca52aaf3b 222 Gene3D G3DSA:1.10.3720.10 9 222 5.5E-33 T 28-03-2018 AM348_RS18615 1507e1bb4231cfaa7d146b0ca52aaf3b 222 SUPERFAMILY SSF161098 11 208 2.22E-40 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21205 50bafbfadadbd50d4fa9c67ef47279bf 225 Gene3D G3DSA:2.60.120.620 2 186 1.2E-28 T 28-03-2018 AM348_RS21205 50bafbfadadbd50d4fa9c67ef47279bf 225 SMART SM00702 1 176 6.4E-26 T 28-03-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 AM348_RS21205 50bafbfadadbd50d4fa9c67ef47279bf 225 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 225 44.227 T 28-03-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 AM348_RS21205 50bafbfadadbd50d4fa9c67ef47279bf 225 SUPERFAMILY SSF51197 5 176 5.05E-6 T 28-03-2018 AM348_RS21205 50bafbfadadbd50d4fa9c67ef47279bf 225 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 175 8.6E-14 T 28-03-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 AM348_RS00670 40ad2d007f09a1a78329ff499c73dddc 86 Gene3D G3DSA:2.30.30.400 10 83 5.3E-26 T 28-03-2018 AM348_RS00670 40ad2d007f09a1a78329ff499c73dddc 86 SUPERFAMILY SSF101744 1 85 2.98E-29 T 28-03-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 AM348_RS00670 40ad2d007f09a1a78329ff499c73dddc 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 8.1E-27 T 28-03-2018 IPR009778 Modulator of Rho-dependent transcription termination AM348_RS16310 71dcb0ca91476e31eb26c4ed31336b43 175 Pfam PF06805 Bacteriophage lambda tail assembly protein I 5 84 1.9E-5 T 28-03-2018 IPR010654 Bacteriophage lambda tail assembly I AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 Gene3D G3DSA:1.10.10.10 123 239 3.2E-24 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 SMART SM00862 156 232 9.2E-21 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 SUPERFAMILY SSF46894 132 233 2.07E-25 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 232 1.1E-22 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 SUPERFAMILY SSF52172 2 124 4.98E-36 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 SMART SM00448 3 115 8.1E-36 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 Pfam PF00072 Response regulator receiver domain 5 115 1.3E-24 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS03370 be3057086ab1abce8433c07d2979ac40 243 Gene3D G3DSA:3.40.50.2300 1 122 2.9E-34 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Gene3D G3DSA:3.40.50.20 145 242 4.7E-17 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 7.3E-38 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 7.3E-38 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 7.3E-38 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 7.3E-38 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 7.3E-38 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 1.8E-266 T 28-03-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Gene3D G3DSA:1.10.1060.10 2 144 3.7E-40 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Gene3D G3DSA:3.50.50.60 315 401 1.8E-16 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Gene3D G3DSA:3.50.50.60 243 314 1.6E-19 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 9.2E-38 T 28-03-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 1.6E-25 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 SUPERFAMILY SSF46548 7 157 6.8E-41 T 28-03-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 SUPERFAMILY SSF51971 145 401 4.41E-68 T 28-03-2018 AM348_RS07880 b6ad19c9198c1c140feaf77ec36a633e 472 Gene3D G3DSA:3.50.50.60 402 472 1.0E-7 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS07200 f5a21091c3aa2d5e55fb7a3d63645c1a 135 Gene3D G3DSA:3.30.300.20 35 135 4.1E-20 T 28-03-2018 IPR015946 K homology domain-like, alpha/beta AM348_RS07200 f5a21091c3aa2d5e55fb7a3d63645c1a 135 SUPERFAMILY SSF82784 1 132 4.97E-43 T 28-03-2018 IPR003718 OsmC/Ohr family AM348_RS07200 f5a21091c3aa2d5e55fb7a3d63645c1a 135 Gene3D G3DSA:2.20.25.10 1 29 7.3E-15 T 28-03-2018 AM348_RS07200 f5a21091c3aa2d5e55fb7a3d63645c1a 135 Pfam PF02566 OsmC-like protein 30 127 9.2E-20 T 28-03-2018 IPR003718 OsmC/Ohr family AM348_RS00850 d7f84ffd9507bb44928545cd56bf256a 679 Gene3D G3DSA:1.10.3470.10 20 351 4.8E-49 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS00850 d7f84ffd9507bb44928545cd56bf256a 679 Gene3D G3DSA:1.10.3470.10 361 679 5.4E-48 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS00850 d7f84ffd9507bb44928545cd56bf256a 679 SUPERFAMILY SSF81345 365 676 2.88E-71 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS00850 d7f84ffd9507bb44928545cd56bf256a 679 Pfam PF01032 FecCD transport family 379 676 1.2E-73 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS00850 d7f84ffd9507bb44928545cd56bf256a 679 Pfam PF01032 FecCD transport family 37 342 4.2E-63 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS00850 d7f84ffd9507bb44928545cd56bf256a 679 SUPERFAMILY SSF81345 21 344 6.8E-60 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS17995 79fda27c3b7033cb1121c18903fa6fc3 111 Pfam PF06942 GlpM protein 5 111 2.9E-51 T 28-03-2018 IPR009707 Membrane protein GlpM/YdgC AM348_RS17995 79fda27c3b7033cb1121c18903fa6fc3 111 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 23 111 4.0E-41 T 28-03-2018 IPR009707 Membrane protein GlpM/YdgC AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 PRINTS PR00446 Hydrogen uptake protein signature 3 15 4.1E-13 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 PRINTS PR00446 Hydrogen uptake protein signature 15 26 4.1E-13 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 PRINTS PR00446 Hydrogen uptake protein signature 56 66 4.1E-13 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 PRINTS PR00446 Hydrogen uptake protein signature 33 50 4.1E-13 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 PRINTS PR00446 Hydrogen uptake protein signature 67 83 4.1E-13 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 140 6.8E-35 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 TIGRFAM TIGR00142 hycI: hydrogenase maturation peptidase HycI 3 146 2.0E-66 T 28-03-2018 IPR004420 Peptidase A31, hydrogenase maturation protease HycI GO:0008233 AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 Gene3D G3DSA:3.40.50.1450 3 155 1.5E-33 T 28-03-2018 IPR023430 Peptidase HybD-like domain AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 SUPERFAMILY SSF53163 4 148 4.45E-35 T 28-03-2018 IPR023430 Peptidase HybD-like domain AM348_RS10395 7deca4c379ac3dae80ddbff156d2453a 156 Pfam PF01750 Hydrogenase maturation protease 29 140 5.8E-29 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS10980 a5b2cc84a93534777cdfba958901ec1e 272 Pfam PF04962 KduI/IolB family 10 264 1.1E-111 T 28-03-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 AM348_RS10980 a5b2cc84a93534777cdfba958901ec1e 272 Gene3D G3DSA:2.60.120.10 17 122 9.7E-35 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS10980 a5b2cc84a93534777cdfba958901ec1e 272 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 264 5.2E-99 T 28-03-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AM348_RS10980 a5b2cc84a93534777cdfba958901ec1e 272 Gene3D G3DSA:2.60.120.10 123 268 5.7E-57 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS10980 a5b2cc84a93534777cdfba958901ec1e 272 SUPERFAMILY SSF51182 4 253 7.56E-71 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS10980 a5b2cc84a93534777cdfba958901ec1e 272 PIRSF PIRSF036628 1 269 8.6E-111 T 28-03-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 AM348_RS11440 462e19ea18c65991aa26ab991095ffd4 425 SUPERFAMILY SSF63520 234 333 2.09E-15 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS11440 462e19ea18c65991aa26ab991095ffd4 425 Gene3D G3DSA:1.10.1790.10 124 222 0.15 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS11440 462e19ea18c65991aa26ab991095ffd4 425 Gene3D G3DSA:1.10.1790.10 227 333 2.0E-13 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS11440 462e19ea18c65991aa26ab991095ffd4 425 Pfam PF00874 PRD domain 132 216 4.1E-7 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS11440 462e19ea18c65991aa26ab991095ffd4 425 Pfam PF00874 PRD domain 243 328 7.5E-12 T 28-03-2018 IPR011608 PRD domain GO:0006355 AM348_RS11840 32ebc44f22b29ef067a7ebf3ba12e0ec 232 SUPERFAMILY SSF51182 107 229 8.6E-29 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS11840 32ebc44f22b29ef067a7ebf3ba12e0ec 232 Gene3D G3DSA:2.60.120.10 89 232 1.3E-31 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS11840 32ebc44f22b29ef067a7ebf3ba12e0ec 232 Pfam PF06249 Ethanolamine utilisation protein EutQ 84 231 5.7E-67 T 28-03-2018 IPR010424 Ethanolamine utilisation EutQ AM348_RS00330 67e1034a02b81e78d5fc3a0d9712ea1e 110 Pfam PF05125 Phage major capsid protein, P2 family 15 85 1.1E-10 T 28-03-2018 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 AM348_RS19320 8af8385a0ff52dd51fd8958a270cb001 324 SUPERFAMILY SSF161098 95 302 5.01E-16 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19320 8af8385a0ff52dd51fd8958a270cb001 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 319 4.2E-39 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS19320 8af8385a0ff52dd51fd8958a270cb001 324 Gene3D G3DSA:1.10.3720.10 1 308 1.1E-29 T 28-03-2018 AM348_RS22535 f430e33ba9c11671b92b504203fa952a 361 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 54 138 1.1E-6 T 28-03-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region AM348_RS22535 f430e33ba9c11671b92b504203fa952a 361 Gene3D G3DSA:2.130.10.10 40 358 5.0E-44 T 28-03-2018 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 AM348_RS22535 f430e33ba9c11671b92b504203fa952a 361 SUPERFAMILY SSF51004 48 347 8.11E-41 T 28-03-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain AM348_RS06955 a30de1c6f01127e97ad5d457b826fa2f 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 8.4E-201 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS06955 a30de1c6f01127e97ad5d457b826fa2f 438 Pfam PF02447 GntP family permease 1 437 5.7E-186 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS06955 a30de1c6f01127e97ad5d457b826fa2f 438 PIRSF PIRSF002746 1 438 3.4E-159 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS17955 d9092e232ae1a8e713baee07d43b7f41 344 Pfam PF01594 AI-2E family transporter 14 328 3.9E-70 T 28-03-2018 IPR002549 Transmembrane protein TqsA-like AM348_RS16975 502f4da0c81f64dc11116a5f36e20164 63 Pfam PF02195 ParB-like nuclease domain 11 58 3.1E-6 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS16975 502f4da0c81f64dc11116a5f36e20164 63 Gene3D G3DSA:3.90.1530.10 2 60 2.3E-6 T 28-03-2018 AM348_RS16975 502f4da0c81f64dc11116a5f36e20164 63 SUPERFAMILY SSF110849 11 58 8.2E-11 T 28-03-2018 IPR003115 ParB/Sulfiredoxin AM348_RS19075 5c4e6fd1ba5baa89189b8eda02588242 207 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 28-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AM348_RS19075 5c4e6fd1ba5baa89189b8eda02588242 207 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 89 3.7E-10 T 28-03-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 AM348_RS14565 165320ecef051bd99a1d62c0c09bd5a7 336 Gene3D G3DSA:1.10.443.10 168 328 7.4E-13 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS14565 165320ecef051bd99a1d62c0c09bd5a7 336 Gene3D G3DSA:1.10.150.130 57 167 6.0E-17 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS14565 165320ecef051bd99a1d62c0c09bd5a7 336 SUPERFAMILY SSF56349 63 326 6.67E-44 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS14565 165320ecef051bd99a1d62c0c09bd5a7 336 Pfam PF00589 Phage integrase family 169 325 2.3E-6 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS07860 daf75ba443bba7be0b6c1380253cf553 289 Hamap MF_01234 N-acetylmannosamine kinase [nanK]. 1 289 46.259 T 28-03-2018 IPR023945 N-acetylmannosamine kinase, bacterial GO:0005524|GO:0008270|GO:0009384|GO:0019262 KEGG: 00520+2.7.1.60|MetaCyc: PWY-6138 AM348_RS07860 daf75ba443bba7be0b6c1380253cf553 289 SUPERFAMILY SSF53067 1 287 6.49E-54 T 28-03-2018 AM348_RS07860 daf75ba443bba7be0b6c1380253cf553 289 Gene3D G3DSA:3.30.420.40 2 118 3.0E-23 T 28-03-2018 AM348_RS07860 daf75ba443bba7be0b6c1380253cf553 289 Gene3D G3DSA:3.30.420.40 119 289 3.3E-46 T 28-03-2018 AM348_RS07860 daf75ba443bba7be0b6c1380253cf553 289 ProSitePatterns PS01125 ROK family signature. 129 156 - T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS07860 daf75ba443bba7be0b6c1380253cf553 289 Pfam PF00480 ROK family 4 288 4.9E-87 T 28-03-2018 IPR000600 ROK family Reactome: R-HSA-4085001 AM348_RS19300 05f156ddcecf6fb6b1852666de37d42d 171 Pfam PF13091 PLD-like domain 39 164 2.0E-26 T 28-03-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 AM348_RS19300 05f156ddcecf6fb6b1852666de37d42d 171 Gene3D G3DSA:3.30.870.10 21 170 8.5E-28 T 28-03-2018 AM348_RS19300 05f156ddcecf6fb6b1852666de37d42d 171 SUPERFAMILY SSF56024 24 167 4.71E-33 T 28-03-2018 AM348_RS20700 3c2decf84b34dfd913100f5efa06df1e 267 Gene3D G3DSA:3.40.50.150 8 261 2.9E-54 T 28-03-2018 AM348_RS20700 3c2decf84b34dfd913100f5efa06df1e 267 SUPERFAMILY SSF53335 6 245 3.65E-44 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20700 3c2decf84b34dfd913100f5efa06df1e 267 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 256 42.748 T 28-03-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 AM348_RS20700 3c2decf84b34dfd913100f5efa06df1e 267 Pfam PF13649 Methyltransferase domain 48 143 3.1E-19 T 28-03-2018 AM348_RS02780 65a440d93d3696131b5dccdccc8f323e 228 SMART SM01007 6 194 2.7E-69 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS02780 65a440d93d3696131b5dccdccc8f323e 228 SUPERFAMILY SSF53639 2 219 1.08E-69 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS02780 65a440d93d3696131b5dccdccc8f323e 228 Gene3D G3DSA:3.40.225.10 1 227 5.1E-60 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS02780 65a440d93d3696131b5dccdccc8f323e 228 Hamap MF_01952 L-ribulose-5-phosphate 4-epimerase UlaF [ulaF]. 1 228 66.32 T 28-03-2018 IPR023499 L-ribulose-5-phosphate 4-epimerase UlaF GO:0008742 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 AM348_RS02780 65a440d93d3696131b5dccdccc8f323e 228 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 193 1.0E-47 T 28-03-2018 IPR001303 Class II aldolase/adducin N-terminal AM348_RS21000 682344a4b79ebaaaf3d1e618f6348212 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 88 - T 28-03-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 AM348_RS21000 682344a4b79ebaaaf3d1e618f6348212 410 Gene3D G3DSA:1.20.1250.20 5 204 5.6E-25 T 28-03-2018 AM348_RS21000 682344a4b79ebaaaf3d1e618f6348212 410 Gene3D G3DSA:1.20.1250.20 209 409 1.5E-11 T 28-03-2018 AM348_RS21000 682344a4b79ebaaaf3d1e618f6348212 410 SUPERFAMILY SSF103473 21 402 7.19E-47 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS21000 682344a4b79ebaaaf3d1e618f6348212 410 Pfam PF07690 Major Facilitator Superfamily 27 362 2.5E-29 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS00065 73beb14b39468c3db9188422daa594d2 81 ProDom PD059807 YMJA ECS1872 1 81 2.0E-31 T 28-03-2018 IPR020251 Uncharacterised protein family, YmjA AM348_RS00065 73beb14b39468c3db9188422daa594d2 81 Pfam PF10820 Protein of unknown function (DUF2543) 1 81 2.1E-46 T 28-03-2018 IPR020251 Uncharacterised protein family, YmjA AM348_RS07280 c84805baeddc935f73038d95b246545a 128 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 1 128 40.003 T 28-03-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 AM348_RS07280 c84805baeddc935f73038d95b246545a 128 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 128 2.3E-54 T 28-03-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 AM348_RS07280 c84805baeddc935f73038d95b246545a 128 SUPERFAMILY SSF75169 1 128 3.34E-38 T 28-03-2018 IPR027396 DsrEFH-like AM348_RS07280 c84805baeddc935f73038d95b246545a 128 Pfam PF02635 DsrE/DsrF-like family 1 128 2.2E-28 T 28-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein AM348_RS07280 c84805baeddc935f73038d95b246545a 128 Gene3D G3DSA:3.40.1260.10 1 128 4.4E-31 T 28-03-2018 AM348_RS02635 98ba2cb0db972ff5e84ba68d127ba5ab 375 SUPERFAMILY SSF141452 20 148 4.18E-29 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS02635 98ba2cb0db972ff5e84ba68d127ba5ab 375 Pfam PF05638 Type VI secretion system effector, Hcp 27 135 1.8E-15 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS02635 98ba2cb0db972ff5e84ba68d127ba5ab 375 Gene3D G3DSA:2.30.110.20 2 149 3.7E-33 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS02635 98ba2cb0db972ff5e84ba68d127ba5ab 375 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 147 2.5E-35 T 28-03-2018 IPR008514 Type VI secretion system effector, Hcp AM348_RS20815 6086a4fc0d16ca631b86673a983bd106 287 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 277 1.0E-111 T 28-03-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 AM348_RS20815 6086a4fc0d16ca631b86673a983bd106 287 Gene3D G3DSA:1.20.1630.10 3 285 1.2E-44 T 28-03-2018 AM348_RS09890 856474e7b8c02d33681ed91a7b8a978d 436 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 22 430 4.8E-198 T 28-03-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 AM348_RS09890 856474e7b8c02d33681ed91a7b8a978d 436 Pfam PF07690 Major Facilitator Superfamily 31 388 1.6E-19 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS09890 856474e7b8c02d33681ed91a7b8a978d 436 SUPERFAMILY SSF103473 20 429 4.05E-43 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS09890 856474e7b8c02d33681ed91a7b8a978d 436 Gene3D G3DSA:1.20.1250.20 18 243 1.0E-24 T 28-03-2018 AM348_RS09890 856474e7b8c02d33681ed91a7b8a978d 436 Gene3D G3DSA:1.20.1250.20 244 436 1.1E-20 T 28-03-2018 AM348_RS10815 038e0af87f3854a804230a550faa0b4a 312 SUPERFAMILY SSF75005 53 231 5.23E-8 T 28-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM348_RS10815 038e0af87f3854a804230a550faa0b4a 312 Gene3D G3DSA:2.115.10.20 24 265 5.4E-6 T 28-03-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain AM348_RS01560 233fd82d3bd536aa19d2445751fdbec0 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 2.9E-99 T 28-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AM348_RS01560 233fd82d3bd536aa19d2445751fdbec0 316 Pfam PF02401 LytB protein 3 282 2.0E-92 T 28-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AM348_RS01560 233fd82d3bd536aa19d2445751fdbec0 316 Gene3D G3DSA:3.40.50.1220 72 287 6.6E-4 T 28-03-2018 IPR029035 DHS-like NAD/FAD-binding domain AM348_RS01560 233fd82d3bd536aa19d2445751fdbec0 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 38.057 T 28-03-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 AM348_RS02820 5d22f400e6da60ac475b9b3e3d646150 249 SUPERFAMILY SSF53474 12 249 3.0E-40 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS02820 5d22f400e6da60ac475b9b3e3d646150 249 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 26 69 1.8E-4 T 28-03-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 AM348_RS02820 5d22f400e6da60ac475b9b3e3d646150 249 Pfam PF00326 Prolyl oligopeptidase family 85 247 7.3E-14 T 28-03-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 AM348_RS02820 5d22f400e6da60ac475b9b3e3d646150 249 Gene3D G3DSA:3.40.50.1820 1 249 9.6E-38 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS18160 093299c07bb66ca8376be37ec1198e26 286 Pfam PF08543 Phosphomethylpyrimidine kinase 74 259 3.4E-17 T 28-03-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS18160 093299c07bb66ca8376be37ec1198e26 286 Gene3D G3DSA:3.40.1190.20 1 286 6.6E-64 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS18160 093299c07bb66ca8376be37ec1198e26 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 285 5.8E-142 T 28-03-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 AM348_RS18160 093299c07bb66ca8376be37ec1198e26 286 SUPERFAMILY SSF53613 1 280 2.03E-77 T 28-03-2018 IPR029056 Ribokinase-like AM348_RS18160 093299c07bb66ca8376be37ec1198e26 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 54.373 T 28-03-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 AM348_RS08500 642d116061388b9bd9c496f20d31c13a 110 Pfam PF01588 Putative tRNA binding domain 14 107 3.0E-30 T 28-03-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 AM348_RS08500 642d116061388b9bd9c496f20d31c13a 110 Gene3D G3DSA:2.40.50.140 7 110 1.6E-32 T 28-03-2018 AM348_RS08500 642d116061388b9bd9c496f20d31c13a 110 SUPERFAMILY SSF50249 8 109 4.9E-31 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS01430 44467f998fe79ab5d0684c84ebac726e 125 SUPERFAMILY SSF110069 5 125 5.1E-48 T 28-03-2018 IPR007474 ApaG domain AM348_RS01430 44467f998fe79ab5d0684c84ebac726e 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 33.249 T 28-03-2018 IPR023065 Uncharacterised protein family ApaG AM348_RS01430 44467f998fe79ab5d0684c84ebac726e 125 Gene3D G3DSA:2.60.40.1470 3 125 4.8E-42 T 28-03-2018 IPR007474 ApaG domain AM348_RS01430 44467f998fe79ab5d0684c84ebac726e 125 Pfam PF04379 ApaG domain 18 102 4.5E-33 T 28-03-2018 IPR007474 ApaG domain AM348_RS20270 f9bd70bbe95024669022efad32912d55 384 Gene3D G3DSA:1.20.1250.20 2 199 2.8E-19 T 28-03-2018 AM348_RS20270 f9bd70bbe95024669022efad32912d55 384 SUPERFAMILY SSF103473 4 382 3.92E-36 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS20270 f9bd70bbe95024669022efad32912d55 384 Pfam PF07690 Major Facilitator Superfamily 12 345 1.9E-19 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS20270 f9bd70bbe95024669022efad32912d55 384 Gene3D G3DSA:1.20.1250.20 200 384 6.1E-13 T 28-03-2018 AM348_RS23565 e7b9c61f6dee7ed4cefb67283e7bd305 385 SUPERFAMILY SSF56601 33 361 9.39E-68 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS23565 e7b9c61f6dee7ed4cefb67283e7bd305 385 Gene3D G3DSA:3.40.710.10 28 375 9.9E-70 T 28-03-2018 AM348_RS23565 e7b9c61f6dee7ed4cefb67283e7bd305 385 Pfam PF00144 Beta-lactamase 45 357 1.2E-65 T 28-03-2018 IPR001466 Beta-lactamase-related AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 Gene3D G3DSA:3.40.190.10 179 267 4.8E-28 T 28-03-2018 AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.7E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.7E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.7E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 Gene3D G3DSA:1.10.10.10 4 92 1.2E-21 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 5.7E-22 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 SUPERFAMILY SSF46785 3 79 3.41E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 SUPERFAMILY SSF53850 92 294 1.55E-40 T 28-03-2018 AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 Pfam PF03466 LysR substrate binding domain 90 294 7.3E-36 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS18525 97f3ec8fadaf83b07a5a72110853174e 297 Gene3D G3DSA:3.40.190.10 93 178 2.8E-11 T 28-03-2018 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 Gene3D G3DSA:3.40.630.10 3 226 3.5E-46 T 28-03-2018 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 Gene3D G3DSA:3.40.630.10 239 372 1.7E-16 T 28-03-2018 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 7 356 6.2E-110 T 28-03-2018 IPR017439 Amidohydrolase GO:0016787 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 Pfam PF07687 Peptidase dimerisation domain 175 267 7.6E-12 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 PIRSF PIRSF005962 1 372 1.3E-112 T 28-03-2018 IPR017439 Amidohydrolase GO:0016787 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 SUPERFAMILY SSF53187 5 187 6.88E-76 T 28-03-2018 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 SUPERFAMILY SSF53187 288 368 6.88E-76 T 28-03-2018 AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 SUPERFAMILY SSF55031 174 279 1.44E-28 T 28-03-2018 IPR011650 Peptidase M20, dimerisation domain AM348_RS17235 0dc1ced581fd7f18bfff63c8983d4609 373 Pfam PF01546 Peptidase family M20/M25/M40 63 367 2.6E-29 T 28-03-2018 IPR002933 Peptidase M20 GO:0008152|GO:0016787 AM348_RS22885 d9536663cdeb77a94139d852c14d7654 164 PIRSF PIRSF030840 1 162 4.5E-82 T 28-03-2018 IPR010413 Heme utilization carrier protein HutX-like AM348_RS22885 d9536663cdeb77a94139d852c14d7654 164 SUPERFAMILY SSF144064 7 159 2.09E-46 T 28-03-2018 AM348_RS22885 d9536663cdeb77a94139d852c14d7654 164 Pfam PF06228 Haem utilisation ChuX/HutX 22 156 7.9E-32 T 28-03-2018 IPR010413 Heme utilization carrier protein HutX-like AM348_RS22885 d9536663cdeb77a94139d852c14d7654 164 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 6 156 2.1E-63 T 28-03-2018 IPR010413 Heme utilization carrier protein HutX-like AM348_RS22885 d9536663cdeb77a94139d852c14d7654 164 Gene3D G3DSA:3.40.1570.10 3 164 3.1E-37 T 28-03-2018 AM348_RS05520 a13ddae13f48cfb3fb2dd86e3dd1c3ba 96 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 15 78 4.0E-15 T 28-03-2018 AM348_RS05520 a13ddae13f48cfb3fb2dd86e3dd1c3ba 96 Pfam PF13710 ACT domain 18 78 7.7E-10 T 28-03-2018 AM348_RS05520 a13ddae13f48cfb3fb2dd86e3dd1c3ba 96 SUPERFAMILY SSF55021 9 80 1.71E-16 T 28-03-2018 AM348_RS05520 a13ddae13f48cfb3fb2dd86e3dd1c3ba 96 Gene3D G3DSA:3.30.70.260 1 96 8.4E-21 T 28-03-2018 AM348_RS05520 a13ddae13f48cfb3fb2dd86e3dd1c3ba 96 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 10 81 3.4E-16 T 28-03-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 AM348_RS06135 2333b0debeb31e6c3bc3a5194b9f6f84 416 SUPERFAMILY SSF53383 16 411 1.02E-56 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS06135 2333b0debeb31e6c3bc3a5194b9f6f84 416 Pfam PF00155 Aminotransferase class I and II 67 391 1.2E-21 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS06135 2333b0debeb31e6c3bc3a5194b9f6f84 416 Gene3D G3DSA:3.40.640.10 69 292 8.0E-37 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS06135 2333b0debeb31e6c3bc3a5194b9f6f84 416 Gene3D G3DSA:3.90.1150.10 293 413 3.4E-16 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS06035 911b03f0e79c97ba28c014ac47baff2d 120 Pfam PF10928 Protein of unknown function (DUF2810) 66 117 3.5E-33 T 28-03-2018 IPR021230 Protein of unknown function DUF2810 AM348_RS07905 4ae7707a53d0765816aaf2224dbeb124 217 Gene3D G3DSA:3.40.50.880 2 217 2.3E-38 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS07905 4ae7707a53d0765816aaf2224dbeb124 217 SUPERFAMILY SSF52317 1 215 7.25E-64 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS07905 4ae7707a53d0765816aaf2224dbeb124 217 PIRSF PIRSF006320 1 216 2.1E-103 T 28-03-2018 IPR026041 Glyoxalase ElbB AM348_RS20560 69977e71223b6b4dd9f1404c93b72f12 55 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 31.668 T 28-03-2018 IPR007040 Ribosome modulation factor AM348_RS20560 69977e71223b6b4dd9f1404c93b72f12 55 Gene3D G3DSA:1.10.10.620 3 53 4.5E-26 T 28-03-2018 AM348_RS20560 69977e71223b6b4dd9f1404c93b72f12 55 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 55 3.0E-24 T 28-03-2018 IPR007040 Ribosome modulation factor AM348_RS20560 69977e71223b6b4dd9f1404c93b72f12 55 Pfam PF04957 Ribosome modulation factor 1 51 4.3E-30 T 28-03-2018 IPR007040 Ribosome modulation factor AM348_RS20780 92765635413fc3852ef4c67baedec37c 315 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 198 208 - T 28-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM348_RS20780 92765635413fc3852ef4c67baedec37c 315 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 113 122 - T 28-03-2018 IPR024002 Formate/nitrite transporter, conserved site AM348_RS20780 92765635413fc3852ef4c67baedec37c 315 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 56 310 8.3E-97 T 28-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM348_RS20780 92765635413fc3852ef4c67baedec37c 315 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 44 309 1.2E-127 T 28-03-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 AM348_RS20780 92765635413fc3852ef4c67baedec37c 315 Pfam PF01226 Formate/nitrite transporter 45 306 1.9E-75 T 28-03-2018 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 AM348_RS20780 92765635413fc3852ef4c67baedec37c 315 Gene3D G3DSA:1.20.1080.10 42 315 2.3E-78 T 28-03-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 AM348_RS17035 c1818e4c97a9f75249a0c854cf5cc3e8 181 Pfam PF13302 Acetyltransferase (GNAT) domain 11 151 3.0E-21 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS17035 c1818e4c97a9f75249a0c854cf5cc3e8 181 Gene3D G3DSA:3.40.630.30 2 180 9.4E-28 T 28-03-2018 AM348_RS17035 c1818e4c97a9f75249a0c854cf5cc3e8 181 SUPERFAMILY SSF55729 5 175 2.84E-44 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS13300 17afdc2c0af01367f8b440f1f4eb4bcf 195 Pfam PF06930 Protein of unknown function (DUF1282) 7 177 3.3E-44 T 28-03-2018 IPR009698 Protein of unknown function DUF1282 AM348_RS06045 3f9186724d8de5779cf8d33ff81dee0e 195 SUPERFAMILY SSF158668 26 187 4.05E-58 T 28-03-2018 AM348_RS06045 3f9186724d8de5779cf8d33ff81dee0e 195 Pfam PF05068 Mannitol repressor 29 187 2.8E-61 T 28-03-2018 IPR007761 Mannitol repressor MtlR-like AM348_RS06045 3f9186724d8de5779cf8d33ff81dee0e 195 Gene3D G3DSA:1.20.120.330 27 187 2.4E-57 T 28-03-2018 AM348_RS16615 0e89b6b418b4592e6180ebf323498829 119 Pfam PF04024 PspC domain 8 65 5.2E-15 T 28-03-2018 IPR007168 Phage shock protein, PspC, N-terminal AM348_RS16615 0e89b6b418b4592e6180ebf323498829 119 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 7 119 7.5E-40 T 28-03-2018 IPR014320 Phage shock protein, PspC AM348_RS09810 8d519461f73cf47d8530e5567f859b6a 417 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 190 404 5.0E-50 T 28-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM348_RS09810 8d519461f73cf47d8530e5567f859b6a 417 SUPERFAMILY SSF53187 188 284 1.16E-52 T 28-03-2018 AM348_RS09810 8d519461f73cf47d8530e5567f859b6a 417 SUPERFAMILY SSF53187 331 407 1.16E-52 T 28-03-2018 AM348_RS09810 8d519461f73cf47d8530e5567f859b6a 417 Pfam PF11741 AMIN domain 39 142 1.7E-26 T 28-03-2018 IPR021731 AMIN domain AM348_RS09810 8d519461f73cf47d8530e5567f859b6a 417 SMART SM00646 250 404 2.1E-68 T 28-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM348_RS09810 8d519461f73cf47d8530e5567f859b6a 417 Gene3D G3DSA:3.40.630.40 187 409 2.9E-57 T 28-03-2018 AM348_RS22450 cef6c9dd3ccdb50d5b4416197b7f65b6 355 Gene3D G3DSA:1.10.3470.10 25 325 5.7E-29 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS22450 cef6c9dd3ccdb50d5b4416197b7f65b6 355 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 320 2.1E-43 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS01105 7b0def1c41ef51620a875b3b3a711549 468 SUPERFAMILY SSF103473 13 428 1.7E-42 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS01105 7b0def1c41ef51620a875b3b3a711549 468 Gene3D G3DSA:1.20.1250.20 12 213 4.9E-19 T 28-03-2018 AM348_RS01105 7b0def1c41ef51620a875b3b3a711549 468 Gene3D G3DSA:1.20.1250.20 214 464 9.3E-17 T 28-03-2018 AM348_RS01105 7b0def1c41ef51620a875b3b3a711549 468 Pfam PF13347 MFS/sugar transport protein 13 432 2.7E-105 T 28-03-2018 AM348_RS01105 7b0def1c41ef51620a875b3b3a711549 468 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 11 446 2.3E-126 T 28-03-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 AM348_RS05120 a4c4ff7d036b31794f438746bc460e3d 32 Pfam PF08046 IlvGEDA operon leader peptide 1 32 1.5E-17 T 28-03-2018 IPR012567 IlvGEDA operon leader peptide GO:0009082 AM348_RS02305 0013b215716c57675df25e5aa4c860e7 303 SUPERFAMILY SSF49401 164 303 2.29E-23 T 28-03-2018 IPR008966 Adhesion domain AM348_RS02305 0013b215716c57675df25e5aa4c860e7 303 Pfam PF00419 Fimbrial protein 159 303 3.2E-15 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS02305 0013b215716c57675df25e5aa4c860e7 303 Gene3D G3DSA:2.60.40.1090 6 143 0.019 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS02305 0013b215716c57675df25e5aa4c860e7 303 Gene3D G3DSA:2.60.40.1090 154 303 2.6E-32 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS20365 dba17d99cddab1a356a0457c4d546ae5 363 Pfam PF00753 Metallo-beta-lactamase superfamily 22 83 2.5E-5 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20365 dba17d99cddab1a356a0457c4d546ae5 363 SUPERFAMILY SSF56281 2 114 7.73E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20365 dba17d99cddab1a356a0457c4d546ae5 363 SUPERFAMILY SSF56281 219 278 7.73E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS20365 dba17d99cddab1a356a0457c4d546ae5 363 Gene3D G3DSA:3.60.15.10 1 334 6.8E-19 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 41.46 T 28-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 Gene3D G3DSA:3.40.50.2300 1 151 2.6E-27 T 28-03-2018 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 SUPERFAMILY SSF52738 156 338 7.06E-75 T 28-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 Gene3D G3DSA:3.40.50.180 152 349 6.9E-80 T 28-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 SMART SM00448 4 119 1.1E-21 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 Pfam PF00072 Response regulator receiver domain 6 109 8.4E-25 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 PIRSF PIRSF000876 1 346 2.6E-139 T 28-03-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 Pfam PF01339 CheB methylesterase 160 336 4.2E-63 T 28-03-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 AM348_RS15035 ac4efc9f977fe28392b1e8338ccc061d 349 SUPERFAMILY SSF52172 1 108 7.26E-28 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 3 426 4.2E-218 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 4.2E-123 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14250 6af2486a2bf471b90838a2f870c964b1 429 Pfam PF02040 Arsenical pump membrane protein 3 423 2.4E-160 T 28-03-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 AM348_RS14860 458569e1268ee7b8621b1bc5f40454c7 129 SUPERFAMILY SSF51306 1 116 1.36E-19 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS14860 458569e1268ee7b8621b1bc5f40454c7 129 Gene3D G3DSA:2.10.109.10 2 120 1.1E-10 T 28-03-2018 AM348_RS19580 968a639018286ca3cf48baf1dbbab27c 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 261 6.6E-61 T 28-03-2018 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 AM348_RS19580 968a639018286ca3cf48baf1dbbab27c 262 SUPERFAMILY SSF52096 4 261 1.04E-83 T 28-03-2018 IPR029045 ClpP/crotonase-like domain AM348_RS19580 968a639018286ca3cf48baf1dbbab27c 262 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 5 262 2.8E-135 T 28-03-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 AM348_RS19580 968a639018286ca3cf48baf1dbbab27c 262 Gene3D G3DSA:3.90.226.10 1 222 5.8E-65 T 28-03-2018 AM348_RS19580 968a639018286ca3cf48baf1dbbab27c 262 Gene3D G3DSA:1.10.12.10 223 262 6.4E-14 T 28-03-2018 IPR014748 Crontonase, C-terminal AM348_RS04520 e858f6fc515930163396dcf6196148fa 211 Pfam PF01292 Prokaryotic cytochrome b561 9 184 2.0E-21 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS04520 e858f6fc515930163396dcf6196148fa 211 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 205 2.0E-65 T 28-03-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 AM348_RS04520 e858f6fc515930163396dcf6196148fa 211 SUPERFAMILY SSF81342 4 206 1.36E-54 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS04520 e858f6fc515930163396dcf6196148fa 211 Gene3D G3DSA:1.20.950.20 1 211 1.4E-53 T 28-03-2018 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 52 75 - T 28-03-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 Gene3D G3DSA:3.40.1190.10 2 287 8.9E-77 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 Gene3D G3DSA:3.90.190.20 288 419 1.6E-29 T 28-03-2018 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 PIRSF PIRSF001563 7 419 2.1E-109 T 28-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 SUPERFAMILY SSF53244 286 413 3.4E-34 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 Pfam PF02875 Mur ligase family, glutamate ligase domain 287 346 2.0E-7 T 28-03-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 Pfam PF08245 Mur ligase middle domain 54 197 1.6E-10 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 28-03-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 413 6.4E-114 T 28-03-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 AM348_RS12445 785630cd1ea98d322a7fe6e135f62126 422 SUPERFAMILY SSF53623 13 284 3.36E-88 T 28-03-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 AM348_RS11910 e13b9beb984e73054853ef5f61ad0fdf 350 SUPERFAMILY SSF46689 240 290 1.97E-7 T 28-03-2018 IPR009057 Homeobox domain-like GO:0003677 AM348_RS11910 e13b9beb984e73054853ef5f61ad0fdf 350 Gene3D G3DSA:1.10.10.60 235 291 2.0E-12 T 28-03-2018 AM348_RS11910 e13b9beb984e73054853ef5f61ad0fdf 350 Pfam PF12833 Helix-turn-helix domain 262 342 9.7E-23 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS11910 e13b9beb984e73054853ef5f61ad0fdf 350 Gene3D G3DSA:1.10.10.60 292 349 7.8E-5 T 28-03-2018 AM348_RS11910 e13b9beb984e73054853ef5f61ad0fdf 350 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 293 338 - T 28-03-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 AM348_RS11910 e13b9beb984e73054853ef5f61ad0fdf 350 SMART SM00342 256 342 1.4E-21 T 28-03-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 AM348_RS16875 96e8eca18f4afba7ec5535d495ff3173 176 SUPERFAMILY SSF81342 4 172 4.08E-24 T 28-03-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 AM348_RS16875 96e8eca18f4afba7ec5535d495ff3173 176 Gene3D G3DSA:1.20.950.20 2 176 9.8E-23 T 28-03-2018 AM348_RS16875 96e8eca18f4afba7ec5535d495ff3173 176 Pfam PF01292 Prokaryotic cytochrome b561 5 172 6.9E-19 T 28-03-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 AM348_RS13790 4514ffe518eea542e1017fd557567aec 297 Pfam PF00483 Nucleotidyl transferase 5 274 1.6E-21 T 28-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM348_RS13790 4514ffe518eea542e1017fd557567aec 297 SUPERFAMILY SSF53448 3 284 7.21E-57 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13790 4514ffe518eea542e1017fd557567aec 297 Gene3D G3DSA:3.90.550.10 2 297 2.2E-50 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13790 4514ffe518eea542e1017fd557567aec 297 TIGRFAM TIGR01105 galF: regulatory protein GalF 1 297 2.8E-203 T 28-03-2018 IPR005774 UTP-glucose pyrophosphorylase, regulatory subunit GO:0006011|GO:0030234 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 AM348_RS15585 6c5bbd1a19ddfdaf8817c11b807fa1b2 270 SUPERFAMILY SSF53335 27 222 1.39E-20 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS15585 6c5bbd1a19ddfdaf8817c11b807fa1b2 270 Gene3D G3DSA:3.40.50.150 7 270 1.6E-17 T 28-03-2018 AM348_RS15585 6c5bbd1a19ddfdaf8817c11b807fa1b2 270 Pfam PF13649 Methyltransferase domain 65 145 1.6E-10 T 28-03-2018 AM348_RS22305 df632d21c44eedd98ab888296b94da09 362 Gene3D G3DSA:3.40.50.1970 2 162 4.9E-19 T 28-03-2018 AM348_RS22305 df632d21c44eedd98ab888296b94da09 362 PIRSF PIRSF000112 2 362 4.0E-122 T 28-03-2018 AM348_RS22305 df632d21c44eedd98ab888296b94da09 362 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 152 180 - T 28-03-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 AM348_RS22305 df632d21c44eedd98ab888296b94da09 362 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 348 2.2E-46 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS22305 df632d21c44eedd98ab888296b94da09 362 SUPERFAMILY SSF56796 9 358 1.44E-57 T 28-03-2018 AM348_RS22305 df632d21c44eedd98ab888296b94da09 362 Gene3D G3DSA:1.20.1090.10 163 362 2.6E-28 T 28-03-2018 AM348_RS17690 5f4ecb39150988bcbe210e7a41547125 119 Pfam PF13811 Domain of unknown function (DUF4186) 7 112 2.9E-51 T 28-03-2018 IPR020378 Protein of unknown function DUF4186 AM348_RS17690 5f4ecb39150988bcbe210e7a41547125 119 ProDom PD076485 YNEG CYTOPLASMIC ECS2130 STY1535 1 114 4.0E-58 T 28-03-2018 IPR020378 Protein of unknown function DUF4186 AM348_RS00275 fef8fa7608536e3a7cc679d7febfcb28 285 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 164 279 5.5E-33 T 28-03-2018 IPR006894 HupH hydrogenase expression protein, C-terminal AM348_RS00275 fef8fa7608536e3a7cc679d7febfcb28 285 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 49 144 2.3E-9 T 28-03-2018 IPR006894 HupH hydrogenase expression protein, C-terminal AM348_RS00275 fef8fa7608536e3a7cc679d7febfcb28 285 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 49 146 9.0E-32 T 28-03-2018 IPR006894 HupH hydrogenase expression protein, C-terminal AM348_RS00275 fef8fa7608536e3a7cc679d7febfcb28 285 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 164 281 3.0E-43 T 28-03-2018 IPR006894 HupH hydrogenase expression protein, C-terminal AM348_RS13605 9f0ea1dff4ca8f25c54dfb67bf9df890 453 Pfam PF16325 Peptidase family U32 C-terminal domain 359 440 1.0E-20 T 28-03-2018 IPR032525 Peptidase family U32, C-terminal AM348_RS13605 9f0ea1dff4ca8f25c54dfb67bf9df890 453 Pfam PF01136 Peptidase family U32 75 343 1.1E-96 T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS13605 9f0ea1dff4ca8f25c54dfb67bf9df890 453 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS20320 b63b315b0cad53df2b7b315decfe56b8 412 SUPERFAMILY SSF56349 114 397 1.15E-46 T 28-03-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 AM348_RS20320 b63b315b0cad53df2b7b315decfe56b8 412 Pfam PF13356 Arm DNA-binding domain 8 100 3.7E-15 T 28-03-2018 IPR025166 Integrase, DNA-binding domain AM348_RS20320 b63b315b0cad53df2b7b315decfe56b8 412 Gene3D G3DSA:1.10.150.130 103 228 4.7E-16 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS20320 b63b315b0cad53df2b7b315decfe56b8 412 Pfam PF00589 Phage integrase family 233 353 7.3E-12 T 28-03-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS20320 b63b315b0cad53df2b7b315decfe56b8 412 Gene3D G3DSA:1.10.443.10 229 395 1.4E-19 T 28-03-2018 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 AM348_RS02785 263196ba7012c71fad259e4c7d970bcb 284 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 4 281 1.5E-149 T 28-03-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 AM348_RS02785 263196ba7012c71fad259e4c7d970bcb 284 Gene3D G3DSA:3.20.20.150 1 284 1.9E-62 T 28-03-2018 AM348_RS02785 263196ba7012c71fad259e4c7d970bcb 284 Pfam PF01261 Xylose isomerase-like TIM barrel 25 230 8.4E-34 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS02785 263196ba7012c71fad259e4c7d970bcb 284 SUPERFAMILY SSF51658 21 271 1.02E-56 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS00180 feb2b7e54231c52bfce6d3bcd8eb6143 453 Pfam PF03606 C4-dicarboxylate anaerobic carrier 4 449 6.8E-85 T 28-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AM348_RS00180 feb2b7e54231c52bfce6d3bcd8eb6143 453 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 58 443 8.1E-113 T 28-03-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 Gene3D G3DSA:3.90.1310.10 33 249 6.3E-54 T 28-03-2018 AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 SUPERFAMILY SSF56519 56 253 3.92E-53 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 Gene3D G3DSA:3.40.710.10 250 618 1.2E-81 T 28-03-2018 AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 239 4.3E-46 T 28-03-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 612 3.4E-238 T 28-03-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0016020 AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 SUPERFAMILY SSF56601 254 611 7.92E-91 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS22115 502d03be99c3a7526a60e81e60a99743 633 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 609 1.6E-88 T 28-03-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 AM348_RS09135 611869e607abba1a03748eaf17383966 447 Pfam PF13483 Beta-lactamase superfamily domain 2 89 1.8E-6 T 28-03-2018 AM348_RS09135 611869e607abba1a03748eaf17383966 447 Gene3D G3DSA:3.60.15.10 2 251 8.0E-11 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS09135 611869e607abba1a03748eaf17383966 447 SUPERFAMILY SSF56281 6 149 1.06E-12 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 Pfam PF00106 short chain dehydrogenase 10 205 2.5E-57 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 SUPERFAMILY SSF51735 8 266 3.47E-69 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 5.7E-37 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 249 5.7E-37 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 5.7E-37 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 5.7E-37 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 5.7E-37 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 5.7E-37 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 196 7.2E-4 T 28-03-2018 AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 3.8E-12 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.8E-12 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 3.8E-12 T 28-03-2018 IPR002347 Short-chain dehydrogenase/reductase SDR AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 28-03-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 AM348_RS03720 3ca42d412e0ff9d7b90214d7761d185b 268 Gene3D G3DSA:3.40.50.720 6 267 3.0E-63 T 28-03-2018 AM348_RS09110 97cdac2aeeb1af0de7e38e3cc2db8665 493 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 490 1.1E-171 T 28-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AM348_RS09110 97cdac2aeeb1af0de7e38e3cc2db8665 493 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 491 7.4E-202 T 28-03-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath AM348_RS08790 4e86dff8c4b947df62af9c458e49f77b 225 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 225 37.393 T 28-03-2018 IPR009576 Biofilm formation YgiB AM348_RS08790 4e86dff8c4b947df62af9c458e49f77b 225 Pfam PF06693 Protein of unknown function (DUF1190) 41 212 5.3E-56 T 28-03-2018 IPR009576 Biofilm formation YgiB AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 Gene3D G3DSA:3.40.50.300 187 493 5.5E-45 T 28-03-2018 AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 SUPERFAMILY SSF52540 195 330 7.14E-86 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 SUPERFAMILY SSF52540 385 676 7.14E-86 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 490 3.0E-43 T 28-03-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 Gene3D G3DSA:3.40.50.300 494 679 5.6E-27 T 28-03-2018 AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 1.1E-61 T 28-03-2018 IPR022161 DNA helicase IV, N-terminal domain AM348_RS20515 97660bd4a4de5ad9ed52e015f57b06a7 684 Pfam PF13361 UvrD-like helicase C-terminal domain 568 663 1.1E-12 T 28-03-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 AM348_RS05600 f1b1845603cb84c1ec22defd10ec8d4c 443 Pfam PF02378 Phosphotransferase system, EIIC 33 351 3.3E-51 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS05600 f1b1845603cb84c1ec22defd10ec8d4c 443 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 16 426 6.1E-111 T 28-03-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 AM348_RS05600 f1b1845603cb84c1ec22defd10ec8d4c 443 PIRSF PIRSF006351 5 437 9.5E-136 T 28-03-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 AM348_RS06150 01e7ac7322406625f82f23c996255ea9 274 SMART SM00047 127 256 3.5E-37 T 28-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AM348_RS06150 01e7ac7322406625f82f23c996255ea9 274 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 142 267 5.4E-16 T 28-03-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 AM348_RS06150 01e7ac7322406625f82f23c996255ea9 274 Gene3D G3DSA:1.10.530.10 70 272 6.9E-24 T 28-03-2018 AM348_RS07160 e8972b73c11d7e9a99059e7c88f3f8e3 55 Pfam PF10832 Protein of unknown function (DUF2559) 2 55 2.7E-32 T 28-03-2018 IPR022541 Protein of unknown function DUF2559 AM348_RS07160 e8972b73c11d7e9a99059e7c88f3f8e3 55 ProDom PD026929 YHFG 1 55 4.0E-19 T 28-03-2018 IPR022541 Protein of unknown function DUF2559 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.5E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.5E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.5E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 Pfam PF03466 LysR substrate binding domain 88 266 8.7E-38 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 Gene3D G3DSA:3.40.190.10 90 173 4.3E-21 T 28-03-2018 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 SUPERFAMILY SSF46785 1 112 7.5E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 SUPERFAMILY SSF53850 89 266 2.52E-36 T 28-03-2018 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 ProDom PD055259 TRANSCRIPTION TRANSCRIPTIONAL REGULATOR DNA-BINDING ACTIVATOR REGULATION YFAH FAMILY LYSR REGULATOR 225 290 3.0E-25 T 28-03-2018 IPR020093 Uncharacterised domain YfaH, C-terminal AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.3E-17 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 Gene3D G3DSA:3.40.190.10 174 258 3.1E-19 T 28-03-2018 AM348_RS12780 4c7dfb3d9b64ced261609ba3adecc0dd 292 Gene3D G3DSA:1.10.10.10 1 83 7.5E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23350 a0fe99b4c8e4166e47c452e738e71dfd 121 Gene3D G3DSA:3.10.180.10 1 121 1.6E-14 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS23350 a0fe99b4c8e4166e47c452e738e71dfd 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 115 1.6E-5 T 28-03-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain AM348_RS23350 a0fe99b4c8e4166e47c452e738e71dfd 121 SUPERFAMILY SSF54593 2 120 1.0E-18 T 28-03-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase AM348_RS06540 1af92cd2e52b817a8a011626a37d92c4 388 Pfam PF00465 Iron-containing alcohol dehydrogenase 16 378 2.4E-114 T 28-03-2018 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 AM348_RS06540 1af92cd2e52b817a8a011626a37d92c4 388 SUPERFAMILY SSF56796 5 387 6.93E-116 T 28-03-2018 AM348_RS06540 1af92cd2e52b817a8a011626a37d92c4 388 Gene3D G3DSA:1.20.1090.10 188 388 2.8E-59 T 28-03-2018 AM348_RS06540 1af92cd2e52b817a8a011626a37d92c4 388 Gene3D G3DSA:3.40.50.1970 14 187 9.6E-45 T 28-03-2018 AM348_RS00985 c69fbd9add3bd4197c5634612bef42e2 146 Gene3D G3DSA:3.40.50.510 1 136 6.6E-20 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS00985 c69fbd9add3bd4197c5634612bef42e2 146 SUPERFAMILY SSF53062 1 124 8.76E-27 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS00985 c69fbd9add3bd4197c5634612bef42e2 146 Pfam PF03610 PTS system fructose IIA component 3 114 3.0E-25 T 28-03-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 AM348_RS00740 7f33caee2ce1d30ea5b4f7579a1163f7 285 Pfam PF01148 Cytidylyltransferase family 4 278 3.0E-70 T 28-03-2018 AM348_RS00740 7f33caee2ce1d30ea5b4f7579a1163f7 285 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 28-03-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 AM348_RS12705 c5c9cf85b6d38837ed23bf952087afa7 111 SUPERFAMILY SSF103481 6 107 8.89E-14 T 28-03-2018 AM348_RS12705 c5c9cf85b6d38837ed23bf952087afa7 111 Pfam PF00892 EamA-like transporter family 4 107 9.8E-11 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS12705 c5c9cf85b6d38837ed23bf952087afa7 111 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 1 111 27.84 T 28-03-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE AM348_RS08975 90a91dfb0be729a73d32a56a44bb1b30 95 ProDom PD065638 YGHW CYTOPLASMIC STY3323 1 94 7.0E-43 T 28-03-2018 IPR022574 Protein of unknown function DUF2623 AM348_RS08975 90a91dfb0be729a73d32a56a44bb1b30 95 Pfam PF11115 Protein of unknown function (DUF2623) 1 92 7.7E-46 T 28-03-2018 IPR022574 Protein of unknown function DUF2623 AM348_RS22230 7feab7d914d6bec6917ecc06bbd0a45c 207 Pfam PF01613 Flavin reductase like domain 23 167 2.7E-17 T 28-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM348_RS22230 7feab7d914d6bec6917ecc06bbd0a45c 207 SMART SM00903 21 172 1.3E-13 T 28-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM348_RS22230 7feab7d914d6bec6917ecc06bbd0a45c 207 Gene3D G3DSA:2.30.110.10 11 189 3.4E-43 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS22230 7feab7d914d6bec6917ecc06bbd0a45c 207 SUPERFAMILY SSF50475 2 187 8.34E-48 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS20195 60350b07caadd3ba0cae9e2652a4aa0d 198 Gene3D G3DSA:3.40.50.360 2 198 8.7E-50 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS20195 60350b07caadd3ba0cae9e2652a4aa0d 198 Pfam PF03358 NADPH-dependent FMN reductase 13 143 7.8E-13 T 28-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM348_RS20195 60350b07caadd3ba0cae9e2652a4aa0d 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 196 1.6E-102 T 28-03-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM348_RS20195 60350b07caadd3ba0cae9e2652a4aa0d 198 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 198 40.633 T 28-03-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 AM348_RS20195 60350b07caadd3ba0cae9e2652a4aa0d 198 SUPERFAMILY SSF52218 1 197 3.93E-62 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS10545 2da7c01b0a4855820f3824ade299449e 142 Pfam PF09335 SNARE associated Golgi protein 25 133 7.3E-11 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS14960 43880e4b9a7f33ecc5a5de557fadb719 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 315 1.0E-45 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS14960 43880e4b9a7f33ecc5a5de557fadb719 328 Gene3D G3DSA:1.10.3470.10 10 321 1.6E-33 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS17510 11869ff20c356cb76ee6ddd2e1233dae 104 Gene3D G3DSA:1.10.260.40 42 104 7.8E-5 T 28-03-2018 AM348_RS17510 11869ff20c356cb76ee6ddd2e1233dae 104 SUPERFAMILY SSF47413 8 67 3.05E-12 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS17510 11869ff20c356cb76ee6ddd2e1233dae 104 Pfam PF01381 Helix-turn-helix 19 67 9.6E-11 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17510 11869ff20c356cb76ee6ddd2e1233dae 104 SMART SM00530 18 72 6.3E-10 T 28-03-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 AM348_RS17510 11869ff20c356cb76ee6ddd2e1233dae 104 Gene3D G3DSA:1.10.10.60 15 41 6.1E-9 T 28-03-2018 AM348_RS04125 6ea120650c67aa13422ed75dc20a3f4c 257 PIRSF PIRSF000728 1 257 4.0E-72 T 28-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS04125 6ea120650c67aa13422ed75dc20a3f4c 257 SUPERFAMILY SSF53633 2 255 1.83E-61 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS04125 6ea120650c67aa13422ed75dc20a3f4c 257 TIGRFAM TIGR00761 argB: acetylglutamate kinase 4 233 3.6E-75 T 28-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS04125 6ea120650c67aa13422ed75dc20a3f4c 257 Hamap MF_00082_B Acetylglutamate kinase [argB]. 1 257 25.694 T 28-03-2018 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 AM348_RS04125 6ea120650c67aa13422ed75dc20a3f4c 257 Pfam PF00696 Amino acid kinase family 4 234 1.2E-38 T 28-03-2018 IPR001048 Aspartate/glutamate/uridylate kinase AM348_RS04125 6ea120650c67aa13422ed75dc20a3f4c 257 Gene3D G3DSA:3.40.1160.10 2 257 1.3E-45 T 28-03-2018 AM348_RS22320 a4fcb4a7d51dbff21ecac7fbde59b925 701 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 469 596 4.5E-35 T 28-03-2018 IPR025299 CstA, C-terminal domain AM348_RS22320 a4fcb4a7d51dbff21ecac7fbde59b925 701 Pfam PF02554 Carbon starvation protein CstA 32 403 3.2E-168 T 28-03-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 Gene3D G3DSA:1.10.10.10 6 91 4.9E-14 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 Gene3D G3DSA:3.40.190.10 100 186 6.7E-6 T 28-03-2018 AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 SUPERFAMILY SSF46785 8 91 4.08E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 Pfam PF03466 LysR substrate binding domain 135 293 1.5E-11 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 SUPERFAMILY SSF53850 97 296 5.97E-18 T 28-03-2018 AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 3.5E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS22285 41c5770fe6d4bd21cf3b0e0244dba885 300 Gene3D G3DSA:3.40.190.10 187 271 1.6E-4 T 28-03-2018 AM348_RS08820 508cdf742df1ebb0987c80e498c5137c 193 SUPERFAMILY SSF53474 3 188 3.95E-20 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS08820 508cdf742df1ebb0987c80e498c5137c 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 188 2.4E-73 T 28-03-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA AM348_RS08820 508cdf742df1ebb0987c80e498c5137c 193 Gene3D G3DSA:3.40.50.1820 2 192 7.0E-20 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS20110 4f39bd14828736fe8583a2bb47e6ee7d 176 Pfam PF06496 Protein of unknown function (DUF1097) 24 157 2.2E-39 T 28-03-2018 IPR009476 Protein of unknown function DUF1097 AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 Gene3D G3DSA:2.30.38.10 363 440 6.1E-18 T 28-03-2018 AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 Gene3D G3DSA:3.30.300.30 441 553 4.7E-25 T 28-03-2018 AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 Gene3D G3DSA:3.40.50.980 191 353 1.1E-34 T 28-03-2018 AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 Gene3D G3DSA:3.40.50.980 19 190 9.6E-33 T 28-03-2018 AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 Pfam PF13193 AMP-binding enzyme C-terminal domain 455 535 2.7E-19 T 28-03-2018 IPR025110 AMP-binding enzyme, C-terminal domain AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 SUPERFAMILY SSF56801 17 546 1.31E-127 T 28-03-2018 AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 28-03-2018 IPR020845 AMP-binding, conserved site AM348_RS03095 e4b87064ac957f72080e8c266664476b 553 Pfam PF00501 AMP-binding enzyme 30 446 1.7E-89 T 28-03-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 AM348_RS06665 734d4f697fe84731aaf8608348108dff 353 SUPERFAMILY SSF53335 96 340 2.79E-41 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS06665 734d4f697fe84731aaf8608348108dff 353 Gene3D G3DSA:1.10.10.10 6 95 1.7E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06665 734d4f697fe84731aaf8608348108dff 353 Pfam PF00891 O-methyltransferase 179 332 5.7E-18 T 28-03-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 AM348_RS06665 734d4f697fe84731aaf8608348108dff 353 Gene3D G3DSA:3.40.50.150 96 353 2.7E-33 T 28-03-2018 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 8 152 4.7E-42 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 SUPERFAMILY SSF53163 5 162 8.37E-42 T 28-03-2018 IPR023430 Peptidase HybD-like domain AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 PRINTS PR00446 Hydrogen uptake protein signature 70 86 3.1E-30 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 PRINTS PR00446 Hydrogen uptake protein signature 38 55 3.1E-30 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 PRINTS PR00446 Hydrogen uptake protein signature 59 69 3.1E-30 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 PRINTS PR00446 Hydrogen uptake protein signature 6 18 3.1E-30 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 PRINTS PR00446 Hydrogen uptake protein signature 18 29 3.1E-30 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 6 157 2.0E-59 T 28-03-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 Pfam PF01750 Hydrogenase maturation protease 23 151 1.7E-37 T 28-03-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 AM348_RS00265 68b7cc3baa4e44f45fa37ad7553587b4 193 Gene3D G3DSA:3.40.50.1450 5 166 1.5E-39 T 28-03-2018 IPR023430 Peptidase HybD-like domain AM348_RS06470 138da8978dc2fdc071e37a34229fd337 111 Pfam PF10625 Universal stress protein B (UspB) 1 106 5.1E-53 T 28-03-2018 IPR019598 Universal stress protein B AM348_RS06470 138da8978dc2fdc071e37a34229fd337 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 38.793 T 28-03-2018 IPR019598 Universal stress protein B AM348_RS07720 e8f3349257bc346816ae317f71489764 340 Pfam PF04085 rod shape-determining protein MreC 123 269 4.4E-36 T 28-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AM348_RS07720 e8f3349257bc346816ae317f71489764 340 PIRSF PIRSF038471 2 284 1.5E-74 T 28-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AM348_RS07720 e8f3349257bc346816ae317f71489764 340 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 284 3.1E-126 T 28-03-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 AM348_RS20715 fa21ea146b9ad1ace279a56dd32b1a33 248 Gene3D G3DSA:3.90.550.10 1 248 1.9E-51 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS20715 fa21ea146b9ad1ace279a56dd32b1a33 248 SUPERFAMILY SSF53448 3 245 1.53E-66 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS20715 fa21ea146b9ad1ace279a56dd32b1a33 248 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 46.43 T 28-03-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AM348_RS20715 fa21ea146b9ad1ace279a56dd32b1a33 248 Pfam PF02348 Cytidylyltransferase 4 221 4.3E-73 T 28-03-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 AM348_RS20715 fa21ea146b9ad1ace279a56dd32b1a33 248 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 3.3E-136 T 28-03-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 AM348_RS06580 71b0fa163076d24582f78e683f932a8f 196 SUPERFAMILY SSF56214 27 79 2.35E-10 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS06580 71b0fa163076d24582f78e683f932a8f 196 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 88 150 6.3E-10 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS06580 71b0fa163076d24582f78e683f932a8f 196 Gene3D G3DSA:3.90.470.20 10 98 1.4E-15 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS06580 71b0fa163076d24582f78e683f932a8f 196 SUPERFAMILY SSF56214 87 181 2.22E-14 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS06580 71b0fa163076d24582f78e683f932a8f 196 Gene3D G3DSA:3.90.470.20 99 178 6.6E-10 T 28-03-2018 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 AM348_RS03570 c3d7309a780b4dfb76c9739119541eb4 69 Gene3D G3DSA:1.10.1470.10 1 69 8.5E-26 T 28-03-2018 IPR008462 CsbD-like domain AM348_RS03570 c3d7309a780b4dfb76c9739119541eb4 69 SUPERFAMILY SSF69047 1 69 2.62E-28 T 28-03-2018 IPR008462 CsbD-like domain AM348_RS03570 c3d7309a780b4dfb76c9739119541eb4 69 Pfam PF05532 CsbD-like 4 56 3.8E-23 T 28-03-2018 IPR008462 CsbD-like domain AM348_RS03570 c3d7309a780b4dfb76c9739119541eb4 69 PIRSF PIRSF039008 1 66 8.8E-34 T 28-03-2018 IPR026042 Stress response protein YjbJ AM348_RS18785 92cdd9e7e46528c3fb49c619d5e26217 348 SUPERFAMILY SSF51569 7 347 5.4E-131 T 28-03-2018 AM348_RS18785 92cdd9e7e46528c3fb49c619d5e26217 348 PIRSF PIRSF001361 1 348 8.8E-158 T 28-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM348_RS18785 92cdd9e7e46528c3fb49c619d5e26217 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 4.0E-173 T 28-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM348_RS18785 92cdd9e7e46528c3fb49c619d5e26217 348 Gene3D G3DSA:3.20.20.70 7 348 1.5E-120 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS18785 92cdd9e7e46528c3fb49c619d5e26217 348 Pfam PF00793 DAHP synthetase I family 43 336 5.8E-107 T 28-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 Gene3D G3DSA:3.40.30.10 1 96 2.4E-24 T 28-03-2018 AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 Pfam PF14497 Glutathione S-transferase, C-terminal domain 115 199 8.0E-8 T 28-03-2018 IPR004046 Glutathione S-transferase, C-terminal AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 211 2.3E-90 T 28-03-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-71182 AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 Gene3D G3DSA:1.20.1050.10 97 213 2.2E-27 T 28-03-2018 AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 SUPERFAMILY SSF47616 81 211 5.4E-33 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 SUPERFAMILY SSF52833 1 88 8.97E-23 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS13270 640ea80411f9ea739d375bdb682ef2fe 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 81 1.4E-16 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS00800 999fc7fbee7c062611407e87f972be75 385 Pfam PF05651 Putative sugar diacid recognition 6 138 5.3E-49 T 28-03-2018 IPR008599 Putative sugar diacid recognition AM348_RS00800 999fc7fbee7c062611407e87f972be75 385 Gene3D G3DSA:1.10.10.60 308 359 2.1E-5 T 28-03-2018 AM348_RS00800 999fc7fbee7c062611407e87f972be75 385 Pfam PF13556 PucR C-terminal helix-turn-helix domain 323 380 3.4E-22 T 28-03-2018 IPR025736 PucR C-terminal helix-turn-helix domain AM348_RS20040 cd3e89efb9541a9aada92c91ba480650 75 Pfam PF07119 Protein of unknown function (DUF1375) 48 69 1.7E-5 T 28-03-2018 IPR010780 Protein of unknown function DUF1375 AM348_RS21880 ce45a511cb94648cc13e2db6e3ebbcea 257 SUPERFAMILY SSF53474 15 254 1.21E-49 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS21880 ce45a511cb94648cc13e2db6e3ebbcea 257 Pfam PF12697 Alpha/beta hydrolase family 19 246 2.2E-18 T 28-03-2018 IPR000073 Alpha/beta hydrolase fold-1 AM348_RS21880 ce45a511cb94648cc13e2db6e3ebbcea 257 Gene3D G3DSA:3.40.50.1820 1 254 2.5E-52 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS08330 2db5660ae36600576c71ebf444dfa873 131 Pfam PF01042 Endoribonuclease L-PSP 9 126 7.9E-44 T 28-03-2018 IPR006175 YjgF/YER057c/UK114 family AM348_RS08330 2db5660ae36600576c71ebf444dfa873 131 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 1.2E-52 T 28-03-2018 IPR006056 RidA family AM348_RS08330 2db5660ae36600576c71ebf444dfa873 131 Gene3D G3DSA:3.30.1330.40 1 131 1.7E-42 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS08330 2db5660ae36600576c71ebf444dfa873 131 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 28-03-2018 IPR019897 RidA, conserved site AM348_RS08330 2db5660ae36600576c71ebf444dfa873 131 SUPERFAMILY SSF55298 1 129 2.36E-41 T 28-03-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like AM348_RS18815 c0ef53934534fec35be5160ab99282e5 259 SUPERFAMILY SSF52540 7 235 4.18E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS18815 c0ef53934534fec35be5160ab99282e5 259 Pfam PF00005 ABC transporter 21 168 4.6E-23 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS18815 c0ef53934534fec35be5160ab99282e5 259 SMART SM00382 29 218 1.3E-14 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS18815 c0ef53934534fec35be5160ab99282e5 259 Gene3D G3DSA:3.40.50.300 2 252 6.3E-53 T 28-03-2018 AM348_RS11700 cb3cbdfc95fa99fd0197d89e12626f9e 119 Pfam PF03960 ArsC family 8 117 3.2E-22 T 28-03-2018 IPR006660 Arsenate reductase-like AM348_RS11700 cb3cbdfc95fa99fd0197d89e12626f9e 119 Gene3D G3DSA:3.40.30.10 2 119 8.5E-37 T 28-03-2018 AM348_RS11700 cb3cbdfc95fa99fd0197d89e12626f9e 119 SUPERFAMILY SSF52833 5 118 2.86E-35 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS11700 cb3cbdfc95fa99fd0197d89e12626f9e 119 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 117 1.0E-47 T 28-03-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 Gene3D G3DSA:3.40.50.150 93 540 1.6E-51 T 28-03-2018 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 PIRSF PIRSF015855 3 684 2.9E-167 T 28-03-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 28-03-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 Pfam PF01555 DNA methylase 116 478 2.3E-31 T 28-03-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 SUPERFAMILY SSF53335 406 494 9.88E-52 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 SUPERFAMILY SSF53335 166 302 9.88E-52 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 SUPERFAMILY SSF53335 85 136 9.88E-52 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 116 128 3.0E-11 T 28-03-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 458 472 3.0E-11 T 28-03-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AM348_RS20325 b4b7d3a482221e7464878a1520ce6b94 685 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 178 197 3.0E-11 T 28-03-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 AM348_RS10370 d0842d5de1efc0dff65423f50eb1b2cb 307 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 194 207 - T 28-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10370 d0842d5de1efc0dff65423f50eb1b2cb 307 Pfam PF00146 NADH dehydrogenase 9 301 8.9E-49 T 28-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS10370 d0842d5de1efc0dff65423f50eb1b2cb 307 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 38 53 - T 28-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 TIGRFAM TIGR00235 udk: uridine kinase 5 213 3.8E-98 T 28-03-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 Gene3D G3DSA:3.40.50.300 4 213 7.5E-56 T 28-03-2018 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 2.1E-46 T 28-03-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Reactome: R-HSA-73614 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 41.623 T 28-03-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 SUPERFAMILY SSF52540 8 205 1.09E-50 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 PRINTS PR00988 Uridine kinase signature 157 168 3.7E-39 T 28-03-2018 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 PRINTS PR00988 Uridine kinase signature 8 25 3.7E-39 T 28-03-2018 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 PRINTS PR00988 Uridine kinase signature 143 153 3.7E-39 T 28-03-2018 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 PRINTS PR00988 Uridine kinase signature 179 192 3.7E-39 T 28-03-2018 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 PRINTS PR00988 Uridine kinase signature 87 102 3.7E-39 T 28-03-2018 AM348_RS13665 6981cff7a683570a968455f676aa89ba 213 PRINTS PR00988 Uridine kinase signature 42 53 3.7E-39 T 28-03-2018 AM348_RS15600 a509f62752c1362b1d58a670f0db54ec 340 Pfam PF01497 Periplasmic binding protein 93 278 2.9E-17 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS15600 a509f62752c1362b1d58a670f0db54ec 340 Gene3D G3DSA:3.40.50.1980 27 160 7.3E-14 T 28-03-2018 AM348_RS15600 a509f62752c1362b1d58a670f0db54ec 340 SUPERFAMILY SSF53807 43 307 9.81E-36 T 28-03-2018 AM348_RS15600 a509f62752c1362b1d58a670f0db54ec 340 Gene3D G3DSA:3.40.50.1980 165 340 3.4E-22 T 28-03-2018 AM348_RS18310 fc8376320a7b241fc4daa5e7217c5388 263 Gene3D G3DSA:3.10.310.10 124 250 2.9E-30 T 28-03-2018 AM348_RS18310 fc8376320a7b241fc4daa5e7217c5388 263 Gene3D G3DSA:3.10.310.10 1 123 2.6E-28 T 28-03-2018 AM348_RS18310 fc8376320a7b241fc4daa5e7217c5388 263 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 237 9.5E-30 T 28-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM348_RS18310 fc8376320a7b241fc4daa5e7217c5388 263 PIRSF PIRSF016184 1 262 1.1E-48 T 28-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM348_RS18310 fc8376320a7b241fc4daa5e7217c5388 263 Pfam PF02567 Phenazine biosynthesis-like protein 9 258 9.2E-50 T 28-03-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 AM348_RS18310 fc8376320a7b241fc4daa5e7217c5388 263 SUPERFAMILY SSF54506 3 261 7.23E-74 T 28-03-2018 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 Gene3D G3DSA:1.10.10.10 2 90 7.1E-17 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 SUPERFAMILY SSF53850 91 295 5.43E-43 T 28-03-2018 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 Gene3D G3DSA:3.40.190.10 98 186 3.6E-17 T 28-03-2018 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 9.1E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 9.1E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 9.1E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 SUPERFAMILY SSF46785 6 85 4.08E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 Gene3D G3DSA:3.40.190.10 187 268 8.2E-14 T 28-03-2018 AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 Pfam PF03466 LysR substrate binding domain 99 296 1.6E-27 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS05565 93318f53eb2ddf4f33fe750c8d81eb4e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 1.2E-17 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS05105 14fe06eb9590262f8831860df8c04841 309 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 9.2E-144 T 28-03-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 AM348_RS05105 14fe06eb9590262f8831860df8c04841 309 Pfam PF01063 Amino-transferase class IV 36 268 5.9E-49 T 28-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM348_RS05105 14fe06eb9590262f8831860df8c04841 309 Gene3D G3DSA:3.20.10.10 143 303 1.4E-48 T 28-03-2018 AM348_RS05105 14fe06eb9590262f8831860df8c04841 309 Gene3D G3DSA:3.30.470.10 1 142 3.4E-43 T 28-03-2018 AM348_RS05105 14fe06eb9590262f8831860df8c04841 309 SUPERFAMILY SSF56752 7 307 7.85E-104 T 28-03-2018 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM348_RS05105 14fe06eb9590262f8831860df8c04841 309 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 28-03-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 AM348_RS03765 6749f4e1389a054ea907c9256d76cb24 59 Gene3D G3DSA:1.10.1220.10 16 57 1.8E-4 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS03440 fdda61d9b98819e5e1aa2a31cd83a97b 136 Pfam PF03788 LrgA family 31 122 8.3E-26 T 28-03-2018 IPR005538 LrgA/CidA family GO:0016021 AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 SUPERFAMILY SSF54862 18 115 8.37E-22 T 28-03-2018 AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 Gene3D G3DSA:3.30.70.20 10 45 1.9E-7 T 28-03-2018 AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 Pfam PF12838 4Fe-4S dicluster domain 39 89 4.2E-12 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 Gene3D G3DSA:3.30.70.20 46 81 7.1E-16 T 28-03-2018 AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 Gene3D G3DSA:3.30.70.20 82 167 4.1E-4 T 28-03-2018 AM348_RS10380 bc28616f787e00d22ea2f051a2e2f11c 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 SUPERFAMILY SSF103473 475 500 1.06E-72 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 SUPERFAMILY SSF103473 9 196 1.06E-72 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 SUPERFAMILY SSF103473 251 423 1.06E-72 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 Gene3D G3DSA:1.20.1250.20 255 503 7.1E-33 T 28-03-2018 AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 498 1.1E-216 T 28-03-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 Pfam PF07690 Major Facilitator Superfamily 19 413 2.7E-54 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS10565 b0b12fdb29f77be5df1025da5c798015 512 Gene3D G3DSA:1.20.1250.20 14 204 2.9E-33 T 28-03-2018 AM348_RS08185 fa217b561a307ee1450b2b8c5d93e670 167 Pfam PF13508 Acetyltransferase (GNAT) domain 45 123 1.1E-10 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS08185 fa217b561a307ee1450b2b8c5d93e670 167 SUPERFAMILY SSF55729 1 158 1.13E-24 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS08185 fa217b561a307ee1450b2b8c5d93e670 167 Gene3D G3DSA:3.40.630.30 3 161 3.8E-19 T 28-03-2018 AM348_RS20565 24ccd3517e4fa48186ba6577653d9529 187 Gene3D G3DSA:3.40.50.10610 12 187 7.1E-42 T 28-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AM348_RS20565 24ccd3517e4fa48186ba6577653d9529 187 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 26 180 1.2E-39 T 28-03-2018 IPR005586 ABC-type transport auxiliary lipoprotein component AM348_RS20565 24ccd3517e4fa48186ba6577653d9529 187 SUPERFAMILY SSF159594 24 183 1.1E-28 T 28-03-2018 AM348_RS04095 12865ec07b411fe9c0d4024be005eb48 119 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 1 119 3.0E-62 T 28-03-2018 IPR009867 Protein of unknown function DUF1422 AM348_RS04095 12865ec07b411fe9c0d4024be005eb48 119 Pfam PF07226 Protein of unknown function (DUF1422) 3 114 4.8E-54 T 28-03-2018 IPR009867 Protein of unknown function DUF1422 AM348_RS01980 5bfb8cc6caeb6014e7b0d0cc7e26cc3a 354 Pfam PF11168 Protein of unknown function (DUF2955) 25 163 2.5E-39 T 28-03-2018 IPR022604 Protein of unknown function DUF2955 AM348_RS01980 5bfb8cc6caeb6014e7b0d0cc7e26cc3a 354 PIRSF PIRSF029594 18 353 1.0E-102 T 28-03-2018 IPR016926 Uncharacterised conserved protein UCP029594 AM348_RS14950 c5e86e8d3a4412354934dbb4911fc90e 329 PIRSF PIRSF002816 1 326 1.5E-153 T 28-03-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 AM348_RS14950 c5e86e8d3a4412354934dbb4911fc90e 329 Gene3D G3DSA:3.40.50.2300 21 147 4.7E-12 T 28-03-2018 AM348_RS14950 c5e86e8d3a4412354934dbb4911fc90e 329 Gene3D G3DSA:3.40.50.2300 148 293 4.7E-16 T 28-03-2018 AM348_RS14950 c5e86e8d3a4412354934dbb4911fc90e 329 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 26 319 1.6E-92 T 28-03-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain AM348_RS14950 c5e86e8d3a4412354934dbb4911fc90e 329 SUPERFAMILY SSF53822 26 325 6.71E-70 T 28-03-2018 IPR028082 Periplasmic binding protein-like I AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 Gene3D G3DSA:2.60.120.10 346 455 1.1E-28 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 Pfam PF01050 Mannose-6-phosphate isomerase 323 473 8.6E-75 T 28-03-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 SUPERFAMILY SSF53448 6 290 4.51E-73 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 Pfam PF00483 Nucleotidyl transferase 8 295 9.1E-79 T 28-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 Gene3D G3DSA:3.90.550.10 8 345 1.7E-95 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 6 477 1.0E-242 T 28-03-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 AM348_RS13750 1b84896279cee742eac1174d04aa7716 478 SUPERFAMILY SSF51182 193 477 2.91E-87 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS13240 3e49dfb9f1e3e02cf69ec11019c3c197 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 2 226 1.2E-105 T 28-03-2018 IPR005261 Conserved hypothetical protein CHP00659 AM348_RS13240 3e49dfb9f1e3e02cf69ec11019c3c197 231 Pfam PF04172 LrgB-like family 12 224 4.5E-79 T 28-03-2018 IPR007300 CidB/LrgB family AM348_RS03595 4bdd9829bd6959ca011113b3b689d9d3 290 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 28-03-2018 IPR030470 UbiA prenyltransferase conserved site AM348_RS03595 4bdd9829bd6959ca011113b3b689d9d3 290 Pfam PF01040 UbiA prenyltransferase family 28 271 3.2E-68 T 28-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AM348_RS03595 4bdd9829bd6959ca011113b3b689d9d3 290 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 11 287 6.1E-112 T 28-03-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AM348_RS03595 4bdd9829bd6959ca011113b3b689d9d3 290 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.399 T 28-03-2018 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 AM348_RS04320 67be2561794fc3169ef4d2c69d061270 336 SUPERFAMILY SSF56655 2 325 1.71E-109 T 28-03-2018 AM348_RS04320 67be2561794fc3169ef4d2c69d061270 336 Gene3D G3DSA:3.30.540.10 152 336 8.4E-56 T 28-03-2018 AM348_RS04320 67be2561794fc3169ef4d2c69d061270 336 Gene3D G3DSA:3.30.540.10 1 149 3.4E-58 T 28-03-2018 AM348_RS04320 67be2561794fc3169ef4d2c69d061270 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 2.0E-131 T 28-03-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AM348_RS04320 67be2561794fc3169ef4d2c69d061270 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 334 9.6E-181 T 28-03-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AM348_RS04320 67be2561794fc3169ef4d2c69d061270 336 PIRSF PIRSF004532 1 333 2.2E-140 T 28-03-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 AM348_RS11400 ac32e3f15d0f36743c34f4e1ca7d8ef5 172 Gene3D G3DSA:3.10.450.50 2 172 4.8E-35 T 28-03-2018 AM348_RS11400 ac32e3f15d0f36743c34f4e1ca7d8ef5 172 SUPERFAMILY SSF54427 6 171 7.42E-45 T 28-03-2018 IPR032710 NTF2-like domain AM348_RS11400 ac32e3f15d0f36743c34f4e1ca7d8ef5 172 Pfam PF00866 Ring hydroxylating beta subunit 19 164 4.5E-49 T 28-03-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 49.693 T 28-03-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 28-03-2018 IPR018336 Ribonuclease PH, conserved site AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 Gene3D G3DSA:3.30.230.70 1 238 4.2E-61 T 28-03-2018 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 SUPERFAMILY SSF55666 153 237 2.88E-26 T 28-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 2.7E-24 T 28-03-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 Pfam PF03725 3' exoribonuclease family, domain 2 157 222 5.0E-12 T 28-03-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 3.6E-114 T 28-03-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 AM348_RS05830 88f44d1804ab47ecc73685c2c96ac417 238 SUPERFAMILY SSF54211 1 181 9.62E-46 T 28-03-2018 IPR020568 Ribosomal protein S5 domain 2-type fold AM348_RS16490 7861c6b358c1a4752ff31f4cf9e3860e 254 SMART SM00014 76 227 1.5E-42 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS16490 7861c6b358c1a4752ff31f4cf9e3860e 254 Pfam PF01569 PAP2 superfamily 76 232 2.5E-34 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS16490 7861c6b358c1a4752ff31f4cf9e3860e 254 SUPERFAMILY SSF48317 145 233 1.44E-32 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS16490 7861c6b358c1a4752ff31f4cf9e3860e 254 SUPERFAMILY SSF48317 15 113 1.44E-32 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS16490 7861c6b358c1a4752ff31f4cf9e3860e 254 Gene3D G3DSA:1.20.144.10 16 251 5.3E-24 T 28-03-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase AM348_RS19170 e751fae1097ebbfceef9ab2b6a734658 294 SUPERFAMILY SSF74650 8 270 2.89E-66 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS19170 e751fae1097ebbfceef9ab2b6a734658 294 PIRSF PIRSF016020 9 294 2.5E-52 T 28-03-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 AM348_RS19170 e751fae1097ebbfceef9ab2b6a734658 294 Gene3D G3DSA:2.70.98.10 1 294 2.0E-63 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS19170 e751fae1097ebbfceef9ab2b6a734658 294 Pfam PF01263 Aldose 1-epimerase 29 277 1.2E-43 T 28-03-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 AM348_RS19660 da81f39c2fd112a8a5b6aeade6b3330b 327 Pfam PF12146 Serine aminopeptidase, S33 76 283 2.6E-14 T 28-03-2018 IPR022742 Serine aminopeptidase, S33 AM348_RS19660 da81f39c2fd112a8a5b6aeade6b3330b 327 SUPERFAMILY SSF53474 33 173 1.22E-32 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS19660 da81f39c2fd112a8a5b6aeade6b3330b 327 SUPERFAMILY SSF53474 237 285 1.22E-32 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS19660 da81f39c2fd112a8a5b6aeade6b3330b 327 Gene3D G3DSA:3.40.50.1820 39 322 2.2E-29 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS03795 b359fe85534403d7d99db9937e0189ce 543 Pfam PF02690 Na+/Pi-cotransporter 13 147 1.2E-35 T 28-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AM348_RS03795 b359fe85534403d7d99db9937e0189ce 543 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 520 1.1E-160 T 28-03-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 AM348_RS03795 b359fe85534403d7d99db9937e0189ce 543 SUPERFAMILY SSF109755 321 531 2.41E-22 T 28-03-2018 AM348_RS03795 b359fe85534403d7d99db9937e0189ce 543 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 308 2.3E-132 T 28-03-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 AM348_RS03795 b359fe85534403d7d99db9937e0189ce 543 Gene3D G3DSA:1.20.58.220 433 543 1.4E-9 T 28-03-2018 AM348_RS03795 b359fe85534403d7d99db9937e0189ce 543 Gene3D G3DSA:1.20.58.220 322 432 8.9E-8 T 28-03-2018 AM348_RS14760 43fd8ff230e66493103270d0ace44bad 199 Gene3D G3DSA:3.20.16.10 19 173 2.7E-31 T 28-03-2018 IPR035443 Herpesvirus/Caudovirus protease domain AM348_RS14760 43fd8ff230e66493103270d0ace44bad 199 Pfam PF04586 Caudovirus prohead serine protease 13 172 1.1E-46 T 28-03-2018 IPR006433 Prohead protease AM348_RS14760 43fd8ff230e66493103270d0ace44bad 199 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 25 168 1.7E-28 T 28-03-2018 IPR006433 Prohead protease AM348_RS11765 535a487689d2f9b2a0fa36cfc38c1c56 232 SUPERFAMILY SSF53474 5 205 3.73E-31 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS11765 535a487689d2f9b2a0fa36cfc38c1c56 232 Gene3D G3DSA:3.40.50.1820 5 215 2.4E-21 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS11765 535a487689d2f9b2a0fa36cfc38c1c56 232 Pfam PF02230 Phospholipase/Carboxylesterase 4 207 2.1E-50 T 28-03-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 AM348_RS15265 1edd0acd37bbef57ac63769866e3be19 79 Pfam PF07351 Protein of unknown function (DUF1480) 1 78 1.7E-39 T 28-03-2018 IPR009950 Protein of unknown function DUF1480 AM348_RS15265 1edd0acd37bbef57ac63769866e3be19 79 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 2 79 1.0E-38 T 28-03-2018 IPR009950 Protein of unknown function DUF1480 AM348_RS10960 e9810d93d5fa4f3b2384b2a92acb48f2 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 329 4.6E-51 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS10960 e9810d93d5fa4f3b2384b2a92acb48f2 342 Gene3D G3DSA:1.10.3470.10 42 331 1.6E-35 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS09475 ceaef961b0ad10013b301347f8d3289f 220 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 15 216 6.2E-73 T 28-03-2018 IPR005744 Hly-III GO:0016021|GO:0019835 AM348_RS09475 ceaef961b0ad10013b301347f8d3289f 220 Pfam PF03006 Haemolysin-III related 12 209 3.2E-38 T 28-03-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 AM348_RS00515 296a647e41869d5fb09d5bcd061c3830 182 Pfam PF00419 Fimbrial protein 36 182 3.9E-16 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00515 296a647e41869d5fb09d5bcd061c3830 182 Gene3D G3DSA:2.60.40.1090 34 182 6.0E-31 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00515 296a647e41869d5fb09d5bcd061c3830 182 SUPERFAMILY SSF49401 35 182 9.94E-35 T 28-03-2018 IPR008966 Adhesion domain AM348_RS22365 487b35481c8f6ec60c70426a590995d1 335 SUPERFAMILY SSF81345 9 328 1.31E-76 T 28-03-2018 IPR029022 ABC transporter, BtuC-like AM348_RS22365 487b35481c8f6ec60c70426a590995d1 335 Pfam PF01032 FecCD transport family 19 328 3.6E-91 T 28-03-2018 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 AM348_RS22365 487b35481c8f6ec60c70426a590995d1 335 Gene3D G3DSA:1.10.3470.10 5 335 3.4E-62 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS06445 ab763cbf70ec5783f970cc9fa6f8a0e2 249 SUPERFAMILY SSF53335 14 245 8.09E-75 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS06445 ab763cbf70ec5783f970cc9fa6f8a0e2 249 Pfam PF04445 Putative SAM-dependent methyltransferase 19 246 3.5E-106 T 28-03-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AM348_RS06445 ab763cbf70ec5783f970cc9fa6f8a0e2 249 Gene3D G3DSA:3.40.1630.10 3 56 5.3E-23 T 28-03-2018 AM348_RS06445 ab763cbf70ec5783f970cc9fa6f8a0e2 249 Gene3D G3DSA:3.40.50.150 57 249 2.1E-31 T 28-03-2018 AM348_RS06445 ab763cbf70ec5783f970cc9fa6f8a0e2 249 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 248 38.058 T 28-03-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 AM348_RS02945 e41f8a3f1c2d78d6f2b5b8b5bdd20d91 322 Pfam PF02666 Phosphatidylserine decarboxylase 63 272 1.5E-59 T 28-03-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AM348_RS02945 e41f8a3f1c2d78d6f2b5b8b5bdd20d91 322 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 286 5.5E-98 T 28-03-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 AM348_RS02945 e41f8a3f1c2d78d6f2b5b8b5bdd20d91 322 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 50.614 T 28-03-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PIRSF PIRSF001111 1 285 2.6E-130 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 Pfam PF00550 Phosphopantetheine attachment site 217 276 1.6E-6 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 SUPERFAMILY SSF47336 213 280 4.58E-7 T 28-03-2018 IPR009081 Phosphopantetheine binding ACP domain AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 Gene3D G3DSA:1.10.1200.10 210 285 1.9E-8 T 28-03-2018 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 Gene3D G3DSA:3.40.50.850 1 209 1.6E-47 T 28-03-2018 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 SUPERFAMILY SSF52499 1 209 1.7E-63 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PRINTS PR01398 Isochorismatase signature 168 186 1.6E-51 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PRINTS PR01398 Isochorismatase signature 80 99 1.6E-51 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PRINTS PR01398 Isochorismatase signature 63 80 1.6E-51 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PRINTS PR01398 Isochorismatase signature 112 134 1.6E-51 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PRINTS PR01398 Isochorismatase signature 186 203 1.6E-51 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 PRINTS PR01398 Isochorismatase signature 2 14 1.6E-51 T 28-03-2018 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 AM348_RS22340 705034a93057349ae7363b1fb69cdc35 285 Pfam PF00857 Isochorismatase family 32 204 2.6E-37 T 28-03-2018 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 AM348_RS21690 4b139d3a2dd093a24fe1babffa62ee9f 139 Pfam PF03928 Haem-degrading 4 128 4.9E-27 T 28-03-2018 IPR005624 Haem-degrading AM348_RS21690 4b139d3a2dd093a24fe1babffa62ee9f 139 SUPERFAMILY SSF143744 2 133 3.01E-31 T 28-03-2018 AM348_RS07380 b62c1dc417c418f6555850ca214a3656 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-22 T 28-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07380 b62c1dc417c418f6555850ca214a3656 63 SUPERFAMILY SSF46561 1 61 1.2E-21 T 28-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07380 b62c1dc417c418f6555850ca214a3656 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 28-03-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07380 b62c1dc417c418f6555850ca214a3656 63 Gene3D G3DSA:1.10.287.310 1 63 1.1E-22 T 28-03-2018 AM348_RS07380 b62c1dc417c418f6555850ca214a3656 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 7.4E-22 T 28-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07380 b62c1dc417c418f6555850ca214a3656 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.547 T 28-03-2018 IPR001854 Ribosomal protein L29/L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS20295 8c427bddb2672aabbaf128420a0dc920 271 Pfam PF00005 ABC transporter 33 181 2.0E-36 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20295 8c427bddb2672aabbaf128420a0dc920 271 Gene3D G3DSA:3.40.50.300 12 250 1.0E-59 T 28-03-2018 AM348_RS20295 8c427bddb2672aabbaf128420a0dc920 271 SUPERFAMILY SSF52540 10 245 2.24E-61 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS20295 8c427bddb2672aabbaf128420a0dc920 271 SMART SM00382 41 226 1.5E-16 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS09230 b30ed9e952a335cc54cb09994ee9d3ba 188 Pfam PF02325 YGGT family 104 167 5.0E-16 T 28-03-2018 IPR003425 CCB3/YggT GO:0016020 AM348_RS09230 b30ed9e952a335cc54cb09994ee9d3ba 188 Pfam PF02325 YGGT family 10 78 1.1E-21 T 28-03-2018 IPR003425 CCB3/YggT GO:0016020 AM348_RS01045 0cde0afc609b11e1779e286e18717910 317 Pfam PF03812 2-keto-3-deoxygluconate permease 3 306 1.6E-122 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS01045 0cde0afc609b11e1779e286e18717910 317 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 14 314 6.0E-115 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS01045 0cde0afc609b11e1779e286e18717910 317 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 312 32.272 T 28-03-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 AM348_RS14870 a213d39f6f63b5132df4e79a8e3739f0 229 Gene3D G3DSA:2.50.20.10 41 229 7.6E-17 T 28-03-2018 AM348_RS17760 79285b4978b13a5079471332153e4c93 357 Gene3D G3DSA:1.10.3470.10 43 354 6.4E-29 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS17760 79285b4978b13a5079471332153e4c93 357 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 340 6.5E-44 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS17760 79285b4978b13a5079471332153e4c93 357 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 1.2E-128 T 28-03-2018 IPR017778 ABC transporter, urea, permease protein, UrtC AM348_RS05210 642be773994e4360cc9b4dcfe6d276d7 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.584 T 28-03-2018 IPR023051 Potassium uptake protein, low affinity, Kup AM348_RS05210 642be773994e4360cc9b4dcfe6d276d7 622 Pfam PF02705 K+ potassium transporter 14 544 7.4E-208 T 28-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AM348_RS05210 642be773994e4360cc9b4dcfe6d276d7 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 550 3.5E-198 T 28-03-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 AM348_RS04330 8bce68c1f59dbfb26915566e488a702d 142 Pfam PF05656 Protein of unknown function (DUF805) 8 132 3.6E-20 T 28-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AM348_RS21580 7301fd052d2c129839640ecf9e7ba323 37 Pfam PF08173 Membrane bound YbgT-like protein 1 26 1.3E-14 T 28-03-2018 IPR012994 Membrane bound YbgT-like AM348_RS21580 7301fd052d2c129839640ecf9e7ba323 37 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 3.5E-20 T 28-03-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 AM348_RS01505 a597babd680d2431348a36db20526cbb 405 Pfam PF02515 CoA-transferase family III 12 378 4.0E-78 T 28-03-2018 IPR003673 CoA-transferase family III GO:0003824 AM348_RS01505 a597babd680d2431348a36db20526cbb 405 Hamap MF_01050 L-carnitine CoA-transferase [caiB]. 1 405 96.874 T 28-03-2018 IPR023452 L-carnitine CoA-transferase CaiB GO:0009437|GO:0016782 AM348_RS01505 a597babd680d2431348a36db20526cbb 405 Gene3D G3DSA:3.40.50.10540 6 405 2.2E-82 T 28-03-2018 IPR023606 CoA-transferase family III domain AM348_RS01505 a597babd680d2431348a36db20526cbb 405 SUPERFAMILY SSF89796 5 401 1.29E-98 T 28-03-2018 IPR023606 CoA-transferase family III domain AM348_RS08595 021afebf24474e2b9a1b55a8f7ae2708 107 Pfam PF08986 Domain of unknown function (DUF1889) 1 107 2.6E-49 T 28-03-2018 IPR015079 Protein of unknown function DUF1889 AM348_RS08595 021afebf24474e2b9a1b55a8f7ae2708 107 SUPERFAMILY SSF140670 12 107 6.8E-54 T 28-03-2018 AM348_RS15500 62a877219407d51badc49f13ca791e97 219 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 210 2.5E-53 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS15500 62a877219407d51badc49f13ca791e97 219 SUPERFAMILY SSF56529 11 212 3.01E-69 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS15500 62a877219407d51badc49f13ca791e97 219 Gene3D G3DSA:3.90.850.10 2 218 3.2E-70 T 28-03-2018 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 AM348_RS04460 dcc9aaff4c92d89c61ebc3d5dea4820c 104 SUPERFAMILY SSF54909 1 103 8.05E-36 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS04460 dcc9aaff4c92d89c61ebc3d5dea4820c 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 3 104 1.5E-55 T 28-03-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 AM348_RS04460 dcc9aaff4c92d89c61ebc3d5dea4820c 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 31.653 T 28-03-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 AM348_RS04460 dcc9aaff4c92d89c61ebc3d5dea4820c 104 Pfam PF05336 L-rhamnose mutarotase 3 103 1.1E-27 T 28-03-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 AM348_RS04460 dcc9aaff4c92d89c61ebc3d5dea4820c 104 Gene3D G3DSA:3.30.70.100 3 101 8.0E-4 T 28-03-2018 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 150 1.6E-44 T 28-03-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 237 1.5E-18 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 Gene3D G3DSA:2.60.40.10 153 244 4.8E-25 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 103 120 - T 28-03-2018 IPR018046 Pili assembly chaperone, conserved site AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 PRINTS PR00969 Pili chaperone signature 104 121 8.0E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 PRINTS PR00969 Pili chaperone signature 132 147 8.0E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 PRINTS PR00969 Pili chaperone signature 171 186 8.0E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 PRINTS PR00969 Pili chaperone signature 26 35 8.0E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 PRINTS PR00969 Pili chaperone signature 75 96 8.0E-36 T 28-03-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 SUPERFAMILY SSF49354 21 150 2.49E-41 T 28-03-2018 IPR008962 PapD-like AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 Gene3D G3DSA:2.60.40.10 25 151 2.4E-38 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS00935 f2fb2d7e9460263f07a46709ebce5610 244 SUPERFAMILY SSF49584 152 240 4.06E-21 T 28-03-2018 IPR016148 Pili assembly chaperone, C-terminal AM348_RS18790 e08d223b4a9315935934aa960522b851 62 Pfam PF10636 Hemin uptake protein hemP 26 62 3.5E-18 T 28-03-2018 IPR019600 Hemin uptake protein HemP AM348_RS18790 e08d223b4a9315935934aa960522b851 62 Gene3D G3DSA:2.10.70.10 26 62 2.6E-18 T 28-03-2018 AM348_RS07020 8d4a67216496dcf59e0c00ae1dfc0a6d 572 Pfam PF13687 Domain of unknown function (DUF4153) 150 387 5.1E-31 T 28-03-2018 IPR025291 Protein of unknown function DUF4153 AM348_RS00625 c5def215dfca59fe1cea5f498c011404 217 SUPERFAMILY SSF161098 9 201 5.1E-48 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS00625 c5def215dfca59fe1cea5f498c011404 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 214 1.4E-20 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS00625 c5def215dfca59fe1cea5f498c011404 217 Gene3D G3DSA:1.10.3720.10 1 217 2.3E-39 T 28-03-2018 AM348_RS14365 b173447e6993a931069df64d0b9faa40 75 Pfam PF10733 Protein of unknown function (DUF2525) 18 75 3.0E-32 T 28-03-2018 IPR019669 Uncharacterised bacterial stress protein YodD AM348_RS19065 a648a76660ec42f8bcdb871ed2f156df 210 Gene3D G3DSA:3.40.50.300 1 209 8.4E-47 T 28-03-2018 AM348_RS19065 a648a76660ec42f8bcdb871ed2f156df 210 SMART SM00382 26 210 0.0014 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS19065 a648a76660ec42f8bcdb871ed2f156df 210 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS19065 a648a76660ec42f8bcdb871ed2f156df 210 SUPERFAMILY SSF52540 1 207 2.0E-50 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS19065 a648a76660ec42f8bcdb871ed2f156df 210 Pfam PF00005 ABC transporter 17 161 4.1E-29 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS22900 647d650a3f0b7f8bc802efbee4f1d183 256 SUPERFAMILY SSF52540 2 230 2.25E-56 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22900 647d650a3f0b7f8bc802efbee4f1d183 256 Pfam PF00005 ABC transporter 18 166 3.7E-25 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS22900 647d650a3f0b7f8bc802efbee4f1d183 256 Gene3D G3DSA:3.40.50.300 1 245 8.0E-57 T 28-03-2018 AM348_RS22900 647d650a3f0b7f8bc802efbee4f1d183 256 SMART SM00382 26 215 6.6E-15 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22900 647d650a3f0b7f8bc802efbee4f1d183 256 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 Pfam PF00460 Flagella basal body rod protein 5 35 2.0E-5 T 28-03-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 260 282 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 360 382 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 524 548 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 PRINTS PR01005 Flagellar hook-associated protein signature 477 498 3.7E-122 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 Gene3D G3DSA:1.20.1270.60 75 346 0.0024 T 28-03-2018 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 347 3.2E-80 T 28-03-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 502 557 8.7E-8 T 28-03-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain AM348_RS19885 3461fe5dad933896d8c2f07d085c41d5 558 SUPERFAMILY SSF64518 78 556 1.2E-44 T 28-03-2018 AM348_RS18610 78af3d2143dcbe2c6518973950c4950f 270 SUPERFAMILY SSF53850 24 268 4.07E-74 T 28-03-2018 AM348_RS18610 78af3d2143dcbe2c6518973950c4950f 270 PIRSF PIRSF002854 2 269 2.8E-91 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS18610 78af3d2143dcbe2c6518973950c4950f 270 Gene3D G3DSA:3.40.190.10 120 269 1.9E-43 T 28-03-2018 AM348_RS18610 78af3d2143dcbe2c6518973950c4950f 270 Gene3D G3DSA:3.40.190.10 24 119 1.1E-24 T 28-03-2018 AM348_RS18610 78af3d2143dcbe2c6518973950c4950f 270 Pfam PF03180 NLPA lipoprotein 25 268 9.0E-78 T 28-03-2018 IPR004872 Lipoprotein NlpA family AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.6E-20 T 28-03-2018 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 2.6E-20 T 28-03-2018 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 2.6E-20 T 28-03-2018 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 2.6E-20 T 28-03-2018 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 2.6E-20 T 28-03-2018 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 Gene3D G3DSA:3.40.50.720 140 382 6.4E-20 T 28-03-2018 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PIRSF PIRSF037495 1 417 2.1E-105 T 28-03-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 1.4E-12 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 1.4E-12 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 1.4E-12 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 1.4E-12 T 28-03-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 SUPERFAMILY SSF51905 2 306 4.38E-41 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 293 7.1E-25 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS02185 5f8ed7ef3d341efb0817ec9118d7a4e8 418 Gene3D G3DSA:3.50.50.60 1 139 6.6E-20 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS01715 55c73a06d8e83f38c0ae41a04d3b11d7 157 PIRSF PIRSF003174 1 157 1.6E-68 T 28-03-2018 IPR010292 Uncharacterised protein family CreA AM348_RS01715 55c73a06d8e83f38c0ae41a04d3b11d7 157 Pfam PF05981 CreA protein 24 155 1.7E-57 T 28-03-2018 IPR010292 Uncharacterised protein family CreA AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.859 T 28-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 Pfam PF00117 Glutamine amidotransferase class-I 7 194 1.4E-18 T 28-03-2018 IPR017926 Glutamine amidotransferase AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 Gene3D G3DSA:3.40.50.880 1 196 7.4E-43 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 SUPERFAMILY SSF52317 3 195 6.11E-54 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 1.8E-74 T 28-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 PIRSF PIRSF000495 1 196 4.4E-64 T 28-03-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 28-03-2018 AM348_RS13875 3c99dc610589b2e3860432a1a78537e9 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 28-03-2018 AM348_RS18385 4d38cc306d1c744de449844d2b1b0f27 315 Pfam PF05229 Spore Coat Protein U domain 26 153 2.6E-6 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS18385 4d38cc306d1c744de449844d2b1b0f27 315 Pfam PF05229 Spore Coat Protein U domain 180 312 1.1E-29 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS18385 4d38cc306d1c744de449844d2b1b0f27 315 SMART SM00972 256 312 1.0E-12 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS18385 4d38cc306d1c744de449844d2b1b0f27 315 SMART SM00972 97 155 0.78 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS09925 b0636cddb71908891728c3e2a8ebdf86 429 TIGRFAM TIGR00814 stp: serine transporter 18 418 5.5E-184 T 28-03-2018 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS14385 cda7c4afc9ee6d0177a368f6322b8888 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 8.3E-25 T 28-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM348_RS14385 cda7c4afc9ee6d0177a368f6322b8888 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 8.3E-25 T 28-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM348_RS14385 cda7c4afc9ee6d0177a368f6322b8888 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 8.3E-25 T 28-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM348_RS14385 cda7c4afc9ee6d0177a368f6322b8888 89 PIRSF PIRSF004669 1 89 7.5E-34 T 28-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM348_RS14385 cda7c4afc9ee6d0177a368f6322b8888 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 4.2E-30 T 28-03-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 AM348_RS14385 cda7c4afc9ee6d0177a368f6322b8888 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 4.5E-35 T 28-03-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 AM348_RS14100 ac57686e08a76c8d47575cb13854c693 201 Gene3D G3DSA:3.40.1010.10 1 111 2.0E-21 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14100 ac57686e08a76c8d47575cb13854c693 201 Gene3D G3DSA:3.30.950.10 112 201 3.5E-19 T 28-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14100 ac57686e08a76c8d47575cb13854c693 201 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 185 5.6E-28 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14100 ac57686e08a76c8d47575cb13854c693 201 SUPERFAMILY SSF53790 1 199 4.06E-42 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS14100 ac57686e08a76c8d47575cb13854c693 201 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 4 195 1.1E-60 T 28-03-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 AM348_RS08770 6d62bad5b96dfc91a5cf45ff4c47a096 58 Pfam PF13260 Protein of unknown function (DUF4051) 1 50 3.8E-32 T 28-03-2018 IPR025125 Protein of unknown function DUF4051 AM348_RS08255 bc79b2e9d237015a6a689be1f287a909 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 136 7.5E-24 T 28-03-2018 IPR002178 PTS EIIA type-2 domain AM348_RS08255 bc79b2e9d237015a6a689be1f287a909 154 SUPERFAMILY SSF55804 6 136 7.59E-29 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS08255 bc79b2e9d237015a6a689be1f287a909 154 Gene3D G3DSA:3.40.930.10 1 144 7.2E-26 T 28-03-2018 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 AM348_RS10420 428a795e7072661546e811a7597960f0 181 Gene3D G3DSA:3.30.70.20 71 125 8.3E-18 T 28-03-2018 AM348_RS10420 428a795e7072661546e811a7597960f0 181 Pfam PF13247 4Fe-4S dicluster domain 55 104 4.2E-8 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS10420 428a795e7072661546e811a7597960f0 181 Gene3D G3DSA:3.30.70.20 1 18 0.018 T 28-03-2018 AM348_RS10420 428a795e7072661546e811a7597960f0 181 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 28-03-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site AM348_RS10420 428a795e7072661546e811a7597960f0 181 Pfam PF12798 4Fe-4S binding domain 131 151 0.011 T 28-03-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain AM348_RS10420 428a795e7072661546e811a7597960f0 181 SUPERFAMILY SSF54862 1 170 5.44E-45 T 28-03-2018 AM348_RS10420 428a795e7072661546e811a7597960f0 181 Gene3D G3DSA:3.30.70.20 19 70 5.7E-11 T 28-03-2018 AM348_RS10420 428a795e7072661546e811a7597960f0 181 Gene3D G3DSA:3.30.70.20 126 179 1.3E-9 T 28-03-2018 AM348_RS00760 b21ed8fc2f5fca6f5540639a0e5cca37 185 SUPERFAMILY SSF55194 2 184 1.13E-71 T 28-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AM348_RS00760 b21ed8fc2f5fca6f5540639a0e5cca37 185 Pfam PF01765 Ribosome recycling factor 20 183 3.3E-63 T 28-03-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 AM348_RS00760 b21ed8fc2f5fca6f5540639a0e5cca37 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 5.8E-80 T 28-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AM348_RS00760 b21ed8fc2f5fca6f5540639a0e5cca37 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.509 T 28-03-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 AM348_RS00760 b21ed8fc2f5fca6f5540639a0e5cca37 185 Gene3D G3DSA:1.10.132.20 2 73 7.8E-10 T 28-03-2018 AM348_RS00760 b21ed8fc2f5fca6f5540639a0e5cca37 185 Gene3D G3DSA:1.10.132.20 74 184 1.9E-36 T 28-03-2018 AM348_RS12495 f6b4a14dee4a471a4f180e46af74865c 171 SUPERFAMILY SSF55729 2 164 5.32E-37 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS12495 f6b4a14dee4a471a4f180e46af74865c 171 Gene3D G3DSA:3.40.630.30 2 170 2.8E-29 T 28-03-2018 AM348_RS12495 f6b4a14dee4a471a4f180e46af74865c 171 Pfam PF13302 Acetyltransferase (GNAT) domain 8 140 9.6E-26 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS04805 14a70827a6ee571b434404c4000b6366 201 Pfam PF02036 SCP-2 sterol transfer family 15 112 4.3E-22 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS04805 14a70827a6ee571b434404c4000b6366 201 SUPERFAMILY SSF55718 12 111 5.3E-7 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS04805 14a70827a6ee571b434404c4000b6366 201 Gene3D G3DSA:3.30.1050.10 19 125 9.4E-5 T 28-03-2018 IPR003033 SCP2 sterol-binding domain AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 Pfam PF03379 CcmB protein 2 216 6.3E-91 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PIRSF PIRSF002764 1 219 6.5E-82 T 28-03-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 1.9E-94 T 28-03-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 8.4E-72 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 8.4E-72 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 8.4E-72 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 8.4E-72 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 8.4E-72 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS12925 e9f23a71aebabfc86a678abad6ff330f 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 8.4E-72 T 28-03-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 AM348_RS13850 0ffa4edf0056d24c0afdee53c826f769 66 SUPERFAMILY SSF51735 2 65 1.89E-10 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13850 0ffa4edf0056d24c0afdee53c826f769 66 Gene3D G3DSA:3.90.25.10 1 66 2.2E-11 T 28-03-2018 AM348_RS16155 e258c1f3ac5a3ce9bfcc4dfe4a3487c4 229 ProDom PD038144 ANTITERMINATOR Q PROPHAGE TRANSCRIPTION ANTITERMINATION CP-933P GIFSY-1 ENCODED BY Q-LIKE 1 218 1.0E-85 T 28-03-2018 IPR010455 Bacteriophage 82, GpQ AM348_RS16155 e258c1f3ac5a3ce9bfcc4dfe4a3487c4 229 Pfam PF06323 Phage antitermination protein Q 6 220 4.2E-91 T 28-03-2018 IPR010455 Bacteriophage 82, GpQ AM348_RS16155 e258c1f3ac5a3ce9bfcc4dfe4a3487c4 229 PIRSF PIRSF004417 1 229 6.3E-100 T 28-03-2018 IPR010455 Bacteriophage 82, GpQ AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 Pfam PF00529 HlyD membrane-fusion protein of T1SS 28 286 8.3E-7 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 53 242 1.5E-38 T 28-03-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 242 2.8E-17 T 28-03-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 SUPERFAMILY SSF111369 54 231 1.09E-25 T 28-03-2018 AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 Gene3D G3DSA:1.10.287.470 113 159 1.7E-8 T 28-03-2018 AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 Gene3D G3DSA:2.40.50.100 55 112 1.2E-17 T 28-03-2018 AM348_RS18200 871d94acfc9b18142a57a4f517e03879 299 Gene3D G3DSA:2.40.50.100 160 291 3.8E-5 T 28-03-2018 AM348_RS06710 09f3d9beb323bcb0ab2835a23278f5bb 119 Pfam PF10694 Protein of unknown function (DUF2500) 5 116 3.4E-31 T 28-03-2018 IPR019635 Protein of unknown function DUF2500 AM348_RS06370 1e524d15eb51ba290d9f302abae7c08f 255 SMART SM00052 8 247 1.7E-40 T 28-03-2018 IPR001633 EAL domain AM348_RS06370 1e524d15eb51ba290d9f302abae7c08f 255 Gene3D G3DSA:3.20.20.450 18 254 9.4E-29 T 28-03-2018 IPR001633 EAL domain AM348_RS06370 1e524d15eb51ba290d9f302abae7c08f 255 Pfam PF00563 EAL domain 27 242 2.4E-27 T 28-03-2018 IPR001633 EAL domain AM348_RS06370 1e524d15eb51ba290d9f302abae7c08f 255 SUPERFAMILY SSF141868 25 253 6.67E-31 T 28-03-2018 IPR001633 EAL domain AM348_RS09160 5dc08bb605d1d7b51af198f44fa87e14 235 Pfam PF04474 Protein of unknown function (DUF554) 3 227 2.0E-67 T 28-03-2018 IPR007563 Protein of unknown function DUF554 AM348_RS20030 7a34febf183e895cc663cefeee1f8cb9 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 284 437 4.9E-45 T 28-03-2018 IPR000160 GGDEF domain AM348_RS20030 7a34febf183e895cc663cefeee1f8cb9 443 SMART SM00267 272 441 2.7E-52 T 28-03-2018 IPR000160 GGDEF domain AM348_RS20030 7a34febf183e895cc663cefeee1f8cb9 443 Gene3D G3DSA:3.30.70.270 278 443 1.1E-47 T 28-03-2018 AM348_RS20030 7a34febf183e895cc663cefeee1f8cb9 443 SUPERFAMILY SSF55073 288 441 1.18E-42 T 28-03-2018 IPR029787 Nucleotide cyclase AM348_RS20030 7a34febf183e895cc663cefeee1f8cb9 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 282 439 5.0E-45 T 28-03-2018 IPR000160 GGDEF domain AM348_RS20030 7a34febf183e895cc663cefeee1f8cb9 443 Pfam PF17158 Membrane-associated sensor, integral membrane domain 41 275 4.7E-70 T 28-03-2018 IPR033424 Membrane-associated sensor domain AM348_RS19215 8e56889a842cd6dbe25ba5dafb46eae0 167 Gene3D G3DSA:3.90.960.10 4 167 1.7E-36 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS19215 8e56889a842cd6dbe25ba5dafb46eae0 167 SUPERFAMILY SSF55826 10 163 2.49E-35 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS19215 8e56889a842cd6dbe25ba5dafb46eae0 167 Pfam PF04073 Aminoacyl-tRNA editing domain 30 154 4.7E-25 T 28-03-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 AM348_RS06750 145ab62aedd80423ef98881d0e344e67 127 SUPERFAMILY SSF55729 19 121 2.09E-9 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS06750 145ab62aedd80423ef98881d0e344e67 127 Pfam PF12568 Acetyltransferase (GNAT) domain 2 125 8.4E-49 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS06750 145ab62aedd80423ef98881d0e344e67 127 Gene3D G3DSA:3.40.630.30 1 127 6.8E-11 T 28-03-2018 AM348_RS06750 145ab62aedd80423ef98881d0e344e67 127 Hamap MF_02018 PanD maturation factor [panM]. 1 126 32.375 T 28-03-2018 IPR032900 PanD regulatory factor PanM GO:0015940|GO:0031638 AM348_RS21785 6c918623dc8e4a64b6c8fc67cdaafbf0 331 Pfam PF06166 Protein of unknown function (DUF979) 7 330 1.8E-128 T 28-03-2018 IPR009323 Protein of unknown function DUF979 AM348_RS08455 49ce360fd92e5512ec94b58aeef6b88a 166 Pfam PF01863 Protein of unknown function DUF45 93 149 1.8E-10 T 28-03-2018 IPR002725 Protein of unknown function DUF45 AM348_RS22530 339d39e97ee876ba9356ad730d0d14f2 464 PIRSF PIRSF006060 6 463 2.7E-77 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS22530 339d39e97ee876ba9356ad730d0d14f2 464 ProSitePatterns PS00218 Amino acid permeases signature. 56 86 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS22530 339d39e97ee876ba9356ad730d0d14f2 464 Pfam PF00324 Amino acid permease 31 462 2.5E-118 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS18300 88b2dc34f832ec40c59bb15e0ae720de 457 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 457 52.549 T 28-03-2018 IPR022913 Multidrug resistance protein MdtK AM348_RS18300 88b2dc34f832ec40c59bb15e0ae720de 457 PIRSF PIRSF006603 5 456 2.6E-60 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS18300 88b2dc34f832ec40c59bb15e0ae720de 457 Pfam PF01554 MatE 244 405 1.5E-37 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS18300 88b2dc34f832ec40c59bb15e0ae720de 457 Pfam PF01554 MatE 17 177 1.2E-40 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS18300 88b2dc34f832ec40c59bb15e0ae720de 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 7.7E-123 T 28-03-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 AM348_RS07165 9dcd39808f3e1d048052aab420149ff8 200 Pfam PF02661 Fic/DOC family 58 152 6.1E-13 T 28-03-2018 IPR003812 Fido domain AM348_RS07165 9dcd39808f3e1d048052aab420149ff8 200 Gene3D G3DSA:1.10.3290.10 20 198 5.6E-21 T 28-03-2018 IPR003812 Fido domain AM348_RS07165 9dcd39808f3e1d048052aab420149ff8 200 SUPERFAMILY SSF140931 42 196 7.06E-28 T 28-03-2018 IPR003812 Fido domain AM348_RS01915 cd18af6f66789c7dd5b0abc0604c0aaf 179 Hamap MF_01061 Primosomal protein 1 [dnaT]. 3 179 40.844 T 28-03-2018 IPR020917 Primosomal protein 1 GO:0006260 AM348_RS09195 6a3ad827c5f9022c92520f0c221412f6 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 4.0E-75 T 28-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AM348_RS09195 6a3ad827c5f9022c92520f0c221412f6 239 SUPERFAMILY SSF53335 18 237 2.79E-40 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS09195 6a3ad827c5f9022c92520f0c221412f6 239 Pfam PF02390 Putative methyltransferase 64 233 5.5E-62 T 28-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AM348_RS09195 6a3ad827c5f9022c92520f0c221412f6 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 30.623 T 28-03-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 AM348_RS09195 6a3ad827c5f9022c92520f0c221412f6 239 Gene3D G3DSA:3.40.50.150 30 239 5.0E-29 T 28-03-2018 AM348_RS17255 d6ca403659bab861af1554f0d3c522d9 308 Gene3D G3DSA:1.10.3720.10 16 279 1.6E-42 T 28-03-2018 AM348_RS17255 d6ca403659bab861af1554f0d3c522d9 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 273 3.0E-15 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS17255 d6ca403659bab861af1554f0d3c522d9 308 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 53 168 1.1E-14 T 28-03-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 AM348_RS17255 d6ca403659bab861af1554f0d3c522d9 308 SUPERFAMILY SSF161098 52 259 7.72E-39 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS08370 e54675067074095e48430f80181155c2 121 Pfam PF05656 Protein of unknown function (DUF805) 11 117 1.0E-34 T 28-03-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 AM348_RS15150 076d6267b8c6e261015afe902af83bb7 251 SMART SM00382 29 199 5.3E-11 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS15150 076d6267b8c6e261015afe902af83bb7 251 SUPERFAMILY SSF52540 3 211 1.6E-54 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS15150 076d6267b8c6e261015afe902af83bb7 251 Gene3D G3DSA:3.40.50.300 1 238 4.0E-55 T 28-03-2018 AM348_RS15150 076d6267b8c6e261015afe902af83bb7 251 Pfam PF00005 ABC transporter 20 149 1.6E-27 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS20255 ff809de3c5f17d4e556f80ab2ea25964 97 Pfam PF13591 MerR HTH family regulatory protein 8 88 1.0E-24 T 28-03-2018 AM348_RS20255 ff809de3c5f17d4e556f80ab2ea25964 97 Gene3D G3DSA:1.10.1660.10 1 97 2.4E-8 T 28-03-2018 AM348_RS13415 cc04544bb2c213c23d97f204433068a5 110 Gene3D G3DSA:3.10.450.160 22 106 7.8E-12 T 28-03-2018 AM348_RS13415 cc04544bb2c213c23d97f204433068a5 110 Pfam PF11776 Nickel/cobalt transporter regulator 50 99 5.6E-17 T 28-03-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AM348_RS13415 cc04544bb2c213c23d97f204433068a5 110 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 32 99 2.0E-27 T 28-03-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB AM348_RS03900 7c227e2103edf9395ad4c51ebd999cab 196 Gene3D G3DSA:1.20.1590.10 5 194 3.5E-78 T 28-03-2018 IPR023381 YP001051499.1-like domain AM348_RS03900 7c227e2103edf9395ad4c51ebd999cab 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 7.6E-84 T 28-03-2018 IPR007338 Protein of unknown function DUF416 AM348_RS16640 26f96002c41d86138f97394750527073 353 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 54 341 2.1E-149 T 28-03-2018 IPR006507 Uncharacterised protein family UPF0283 AM348_RS16640 26f96002c41d86138f97394750527073 353 Pfam PF05128 Domain of unknown function (DUF697) 183 341 5.7E-54 T 28-03-2018 IPR021147 Protein of unknown function DUF697 AM348_RS16640 26f96002c41d86138f97394750527073 353 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 347 39.324 T 28-03-2018 IPR006507 Uncharacterised protein family UPF0283 AM348_RS11005 7a4415e64b5e7c9ce6f62ef98d26fcb1 469 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 60 464 9.3E-117 T 28-03-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 AM348_RS11005 7a4415e64b5e7c9ce6f62ef98d26fcb1 469 Pfam PF02321 Outer membrane efflux protein 273 446 2.1E-21 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS11005 7a4415e64b5e7c9ce6f62ef98d26fcb1 469 Pfam PF02321 Outer membrane efflux protein 62 243 7.0E-29 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS11005 7a4415e64b5e7c9ce6f62ef98d26fcb1 469 Gene3D G3DSA:1.20.1600.10 22 454 3.2E-53 T 28-03-2018 AM348_RS11005 7a4415e64b5e7c9ce6f62ef98d26fcb1 469 SUPERFAMILY SSF56954 6 451 3.27E-64 T 28-03-2018 AM348_RS08830 9e1058f6ceadcf01ed8af7e63ecd825d 104 Gene3D G3DSA:3.30.70.100 1 102 2.7E-21 T 28-03-2018 AM348_RS08830 9e1058f6ceadcf01ed8af7e63ecd825d 104 SUPERFAMILY SSF54909 1 98 1.9E-30 T 28-03-2018 IPR011008 Dimeric alpha-beta barrel AM348_RS08830 9e1058f6ceadcf01ed8af7e63ecd825d 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 87 3.7E-28 T 28-03-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain AM348_RS10090 d5752b05361de7165495bae408046a21 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 59.35 T 28-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM348_RS10090 d5752b05361de7165495bae408046a21 302 PIRSF PIRSF002936 1 302 4.2E-155 T 28-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM348_RS10090 d5752b05361de7165495bae408046a21 302 SUPERFAMILY SSF52402 6 209 1.23E-75 T 28-03-2018 AM348_RS10090 d5752b05361de7165495bae408046a21 302 Gene3D G3DSA:3.40.50.620 2 300 4.0E-43 T 28-03-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold AM348_RS10090 d5752b05361de7165495bae408046a21 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.5E-168 T 28-03-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 AM348_RS10090 d5752b05361de7165495bae408046a21 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.5E-66 T 28-03-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 AM348_RS19605 a9297f86c933d3d113a02d3b0f7210a3 95 Pfam PF06243 Phenylacetic acid degradation B 6 91 1.2E-39 T 28-03-2018 IPR009359 Phenylacetic acid degradation B AM348_RS19605 a9297f86c933d3d113a02d3b0f7210a3 95 PIRSF PIRSF030200 1 95 1.0E-43 T 28-03-2018 IPR009359 Phenylacetic acid degradation B AM348_RS19605 a9297f86c933d3d113a02d3b0f7210a3 95 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 6 95 2.3E-49 T 28-03-2018 IPR009359 Phenylacetic acid degradation B AM348_RS14370 7047ef4071ea163048183f81d533373c 80 Hamap MF_01549 Protein DsrB [dsrB]. 19 80 29.299 T 28-03-2018 IPR019717 Dextransucrase DSRB AM348_RS14370 7047ef4071ea163048183f81d533373c 80 Pfam PF10781 Dextransucrase DSRB 19 78 6.9E-36 T 28-03-2018 IPR019717 Dextransucrase DSRB AM348_RS01315 86d545c4263bdaf236af4d2f154c6ad8 427 Gene3D G3DSA:1.20.1250.20 3 208 4.0E-34 T 28-03-2018 AM348_RS01315 86d545c4263bdaf236af4d2f154c6ad8 427 Pfam PF07690 Major Facilitator Superfamily 19 377 1.3E-58 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS01315 86d545c4263bdaf236af4d2f154c6ad8 427 SUPERFAMILY SSF103473 6 412 5.1E-87 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS01315 86d545c4263bdaf236af4d2f154c6ad8 427 Gene3D G3DSA:1.20.1250.20 223 425 9.8E-31 T 28-03-2018 AM348_RS02725 0d9a42faafeb2b4d89ce3b9698f1bd04 220 Hamap MF_01606 Iron-sulfur cluster repair protein YtfE [ytfE]. 1 220 51.95 T 28-03-2018 IPR023742 Iron-sulfur cluster repair protein YftE GO:0006950|GO:0030091 AM348_RS02725 0d9a42faafeb2b4d89ce3b9698f1bd04 220 Gene3D G3DSA:1.10.3910.10 3 60 7.1E-12 T 28-03-2018 AM348_RS02725 0d9a42faafeb2b4d89ce3b9698f1bd04 220 Gene3D G3DSA:1.20.120.520 61 218 1.1E-29 T 28-03-2018 AM348_RS02725 0d9a42faafeb2b4d89ce3b9698f1bd04 220 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 216 2.7E-80 T 28-03-2018 IPR019903 Repair of iron centres family AM348_RS02725 0d9a42faafeb2b4d89ce3b9698f1bd04 220 Pfam PF04405 Domain of Unknown function (DUF542) 5 58 3.4E-20 T 28-03-2018 IPR019903 Repair of iron centres family AM348_RS02725 0d9a42faafeb2b4d89ce3b9698f1bd04 220 Pfam PF01814 Hemerythrin HHE cation binding domain 77 216 1.4E-26 T 28-03-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 AM348_RS17420 76917a49787b6a3b577c32d6aa18de0e 46 ProDom PD049510 RIBOSOMAL S22 30S RIBONUCLEOPROTEIN SUBUNIT D RIBOSOME- SEQUENCING DIRECT ASSOCIATED 1 44 4.0E-16 T 28-03-2018 IPR012607 Ribosomal protein S22 GO:0003735|GO:0005840|GO:0006412 AM348_RS17420 76917a49787b6a3b577c32d6aa18de0e 46 Pfam PF08136 30S ribosomal protein subunit S22 family 1 43 8.1E-29 T 28-03-2018 IPR012607 Ribosomal protein S22 GO:0003735|GO:0005840|GO:0006412 AM348_RS08635 7c9d0522f6daf3d96a85266d4c327fbc 205 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 8 203 1.2E-101 T 28-03-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AM348_RS08635 7c9d0522f6daf3d96a85266d4c327fbc 205 PIRSF PIRSF005624 2 204 8.6E-50 T 28-03-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 AM348_RS08635 7c9d0522f6daf3d96a85266d4c327fbc 205 Hamap MF_01389 Urease accessory protein UreG [ureG]. 6 204 47.485 T 28-03-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 AM348_RS08635 7c9d0522f6daf3d96a85266d4c327fbc 205 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 178 1.3E-40 T 28-03-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain AM348_RS08635 7c9d0522f6daf3d96a85266d4c327fbc 205 SUPERFAMILY SSF52540 4 199 4.21E-35 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS08635 7c9d0522f6daf3d96a85266d4c327fbc 205 Gene3D G3DSA:3.40.50.300 8 176 6.1E-18 T 28-03-2018 AM348_RS14680 9f84208bc1fda0340919b169a574d72c 129 Gene3D G3DSA:3.30.1330.70 1 124 7.9E-28 T 28-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM348_RS14680 9f84208bc1fda0340919b169a574d72c 129 PIRSF PIRSF001007 1 125 2.2E-43 T 28-03-2018 IPR016281 Crossover junction endodeoxyribonuclease, RusA GO:0008821 AM348_RS14680 9f84208bc1fda0340919b169a574d72c 129 Pfam PF05866 Endodeoxyribonuclease RusA 6 118 5.2E-18 T 28-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM348_RS14680 9f84208bc1fda0340919b169a574d72c 129 SUPERFAMILY SSF103084 2 120 3.79E-28 T 28-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM348_RS00305 54a662679e5a1c3c4c13af5485a58694 149 SUPERFAMILY SSF55729 7 136 3.16E-31 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS00305 54a662679e5a1c3c4c13af5485a58694 149 Gene3D G3DSA:3.40.630.30 3 144 7.3E-25 T 28-03-2018 AM348_RS00305 54a662679e5a1c3c4c13af5485a58694 149 Pfam PF00583 Acetyltransferase (GNAT) family 45 135 9.1E-17 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS21485 12b294d7388a87f69c3107cd641b14dd 350 PIRSF PIRSF001361 1 350 3.1E-165 T 28-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM348_RS21485 12b294d7388a87f69c3107cd641b14dd 350 Gene3D G3DSA:3.20.20.70 8 350 7.2E-135 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS21485 12b294d7388a87f69c3107cd641b14dd 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 2.9E-180 T 28-03-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 AM348_RS21485 12b294d7388a87f69c3107cd641b14dd 350 Pfam PF00793 DAHP synthetase I family 38 338 9.7E-110 T 28-03-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 AM348_RS21485 12b294d7388a87f69c3107cd641b14dd 350 SUPERFAMILY SSF51569 7 348 9.73E-141 T 28-03-2018 AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 Pfam PF00005 ABC transporter 33 182 6.9E-28 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 Pfam PF00005 ABC transporter 285 442 8.9E-22 T 28-03-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 Gene3D G3DSA:3.40.50.300 265 506 3.9E-37 T 28-03-2018 AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 Gene3D G3DSA:3.40.50.300 14 242 3.0E-54 T 28-03-2018 AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 SMART SM00382 294 491 4.1E-5 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 SMART SM00382 42 230 3.1E-12 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 SUPERFAMILY SSF52540 257 501 2.57E-45 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 28-03-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 AM348_RS22445 25b55ffcf900cae88f4f7b116c665d49 514 SUPERFAMILY SSF52540 16 239 2.61E-57 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS02115 82ed83e04f89f0114b13cd767c55c0cd 239 Pfam PF02754 Cysteine-rich domain 3 84 2.9E-13 T 28-03-2018 IPR004017 Cysteine-rich domain AM348_RS02115 82ed83e04f89f0114b13cd767c55c0cd 239 Pfam PF02754 Cysteine-rich domain 133 216 2.7E-13 T 28-03-2018 IPR004017 Cysteine-rich domain AM348_RS20245 5a7a6170dadcc0116e813d4923df05b9 207 SUPERFAMILY SSF52833 21 193 1.79E-37 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS20245 5a7a6170dadcc0116e813d4923df05b9 207 Pfam PF01323 DSBA-like thioredoxin domain 44 180 2.0E-23 T 28-03-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 AM348_RS20245 5a7a6170dadcc0116e813d4923df05b9 207 PIRSF PIRSF001488 1 207 2.9E-72 T 28-03-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL AM348_RS20245 5a7a6170dadcc0116e813d4923df05b9 207 Gene3D G3DSA:3.40.30.10 17 207 2.2E-27 T 28-03-2018 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 TIGRFAM TIGR00492 alr: alanine racemase 4 356 3.2E-136 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 Gene3D G3DSA:3.20.20.10 7 201 1.9E-41 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 SUPERFAMILY SSF51419 9 233 7.03E-67 T 28-03-2018 IPR029066 PLP-binding barrel AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 61 79 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 248 263 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 265 280 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 286 303 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 338 351 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 27 43 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 155 166 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 190 217 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 PRINTS PR00992 Alanine racemase signature 121 133 1.4E-75 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 Hamap MF_01201 Alanine racemase. 2 356 33.829 T 28-03-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 Pfam PF00842 Alanine racemase, C-terminal domain 232 354 5.6E-40 T 28-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 SUPERFAMILY SSF50621 227 355 1.29E-44 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 Gene3D G3DSA:2.40.37.10 202 356 1.6E-60 T 28-03-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 SMART SM01005 232 356 5.2E-61 T 28-03-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 28-03-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS15540 f2a3d85bb71a7decf6015e578e91a590 356 Pfam PF01168 Alanine racemase, N-terminal domain 9 217 1.9E-68 T 28-03-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 84 5.8E-33 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 Pfam PF01455 HupF/HypC family 1 71 1.4E-25 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 SUPERFAMILY SSF159127 1 86 7.19E-28 T 28-03-2018 AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 28-03-2018 IPR019812 Hydrogenase assembly chaperone, conserved site AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 44 60 6.9E-23 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 6.9E-23 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 62 74 6.9E-23 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS10340 bf49e02b40ef28970836e63dfdd7ca3d 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 6.9E-23 T 28-03-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC AM348_RS22805 9006a2607e33647578da331f0544f90b 377 Gene3D G3DSA:2.40.160.10 12 377 2.3E-31 T 28-03-2018 AM348_RS22805 9006a2607e33647578da331f0544f90b 377 SUPERFAMILY SSF56935 44 377 6.8E-29 T 28-03-2018 AM348_RS04295 d401960230121c6c6516939a79f967e9 309 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 18 301 2.3E-149 T 28-03-2018 AM348_RS04295 d401960230121c6c6516939a79f967e9 309 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 9 302 21.086 T 28-03-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 AM348_RS04295 d401960230121c6c6516939a79f967e9 309 PIRSF PIRSF005355 1 307 2.4E-100 T 28-03-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 AM348_RS04295 d401960230121c6c6516939a79f967e9 309 Pfam PF01040 UbiA prenyltransferase family 27 278 1.2E-37 T 28-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AM348_RS06180 4d81ab30a3e1694dba5cbc2571c579d6 102 Pfam PF13983 YsaB-like lipoprotein 28 102 1.3E-42 T 28-03-2018 IPR025728 YsaB-like lipoprotein AM348_RS02705 823de05e43993d5982d9e3253091f9f2 282 SUPERFAMILY SSF51735 2 255 1.38E-62 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS02705 823de05e43993d5982d9e3253091f9f2 282 Pfam PF13460 NAD(P)H-binding 6 184 9.5E-22 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS02705 823de05e43993d5982d9e3253091f9f2 282 Gene3D G3DSA:3.40.50.720 1 232 1.9E-22 T 28-03-2018 AM348_RS17675 1a4f2c93b26cb0850a8ac3eae6022830 304 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 280 1.2E-58 T 28-03-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 AM348_RS05440 c3c0f767d0cf5b32721b99b0094e71e4 111 Pfam PF07119 Protein of unknown function (DUF1375) 16 78 5.5E-12 T 28-03-2018 IPR010780 Protein of unknown function DUF1375 AM348_RS13560 8ab7aac3d641bdf52ae77686af0bcc92 552 SUPERFAMILY SSF52540 1 332 4.97E-15 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS13560 8ab7aac3d641bdf52ae77686af0bcc92 552 Gene3D G3DSA:3.40.50.300 1 348 5.7E-16 T 28-03-2018 AM348_RS13560 8ab7aac3d641bdf52ae77686af0bcc92 552 Pfam PF11398 Protein of unknown function (DUF2813) 1 375 1.7E-150 T 28-03-2018 IPR022602 Protein of unknown function DUF2813 AM348_RS11435 58237a75eabf9b823b5f0ae4fdffe402 382 PIRSF PIRSF004925 1 381 6.6E-118 T 28-03-2018 IPR026032 Probable 3-phenylpropionic acid transporter AM348_RS11435 58237a75eabf9b823b5f0ae4fdffe402 382 Gene3D G3DSA:1.20.1250.20 3 191 1.0E-15 T 28-03-2018 AM348_RS11435 58237a75eabf9b823b5f0ae4fdffe402 382 SUPERFAMILY SSF103473 7 371 7.59E-39 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS11435 58237a75eabf9b823b5f0ae4fdffe402 382 Pfam PF12832 MFS_1 like family 8 358 9.3E-45 T 28-03-2018 IPR024989 Major facilitator superfamily associated domain AM348_RS11435 58237a75eabf9b823b5f0ae4fdffe402 382 Gene3D G3DSA:1.20.1250.20 192 375 2.2E-12 T 28-03-2018 AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 1.2E-189 T 28-03-2018 AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 SUPERFAMILY SSF53383 6 416 9.25E-185 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 28-03-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 Gene3D G3DSA:3.90.1150.10 276 416 2.5E-59 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 Gene3D G3DSA:3.40.640.10 37 275 7.3E-52 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 PIRSF PIRSF000412 1 417 2.2E-175 T 28-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AM348_RS11380 11a5bd83093a160ade0994b68f7f3997 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 53.49 T 28-03-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0006545|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 AM348_RS14990 7b08425f47b528a6fb8725327f7bc0a3 194 SUPERFAMILY SSF160930 7 162 6.93E-64 T 28-03-2018 AM348_RS14990 7b08425f47b528a6fb8725327f7bc0a3 194 Pfam PF05280 Flagellar transcriptional activator (FlhC) 3 174 4.9E-82 T 28-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM348_RS14990 7b08425f47b528a6fb8725327f7bc0a3 194 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 3 188 45.432 T 28-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM348_RS14990 7b08425f47b528a6fb8725327f7bc0a3 194 PIRSF PIRSF003159 3 183 8.3E-92 T 28-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM348_RS14990 7b08425f47b528a6fb8725327f7bc0a3 194 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 3 194 2.0E-106 T 28-03-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 AM348_RS21280 1961fc2f98c3f192f250a417fc71f296 136 Pfam PF11076 Putative inner membrane protein YbhQ 1 132 1.2E-66 T 28-03-2018 IPR021303 Uncharacterised protein family, inner membrane, YbhQ AM348_RS18405 60311c34215b0d406e9a4f58bc42d24b 110 SUPERFAMILY SSF103481 6 107 7.06E-23 T 28-03-2018 AM348_RS18405 60311c34215b0d406e9a4f58bc42d24b 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 6.9E-31 T 28-03-2018 IPR000390 Small multidrug resistance protein family GO:0016021 AM348_RS21890 a9ee7a8ec860b68b4a25404e4e1d7cab 191 PIRSF PIRSF038996 16 187 2.3E-70 T 28-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM348_RS21890 a9ee7a8ec860b68b4a25404e4e1d7cab 191 ProSitePatterns PS00201 Flavodoxin signature. 21 37 - T 28-03-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 AM348_RS21890 a9ee7a8ec860b68b4a25404e4e1d7cab 191 Gene3D G3DSA:3.40.50.360 19 185 1.2E-39 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS21890 a9ee7a8ec860b68b4a25404e4e1d7cab 191 Pfam PF00258 Flavodoxin 21 175 4.5E-34 T 28-03-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 AM348_RS21890 a9ee7a8ec860b68b4a25404e4e1d7cab 191 SUPERFAMILY SSF52218 20 185 2.33E-54 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS21890 a9ee7a8ec860b68b4a25404e4e1d7cab 191 TIGRFAM TIGR01752 flav_long: flavodoxin 19 183 1.5E-77 T 28-03-2018 IPR010086 Flavodoxin, long chain GO:0010181 AM348_RS17820 17b1de0da689a55aa8e5677a2d992687 444 SUPERFAMILY SSF103473 14 435 1.31E-65 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS17820 17b1de0da689a55aa8e5677a2d992687 444 Pfam PF00083 Sugar (and other) transporter 25 237 1.8E-27 T 28-03-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 AM348_RS17820 17b1de0da689a55aa8e5677a2d992687 444 Gene3D G3DSA:1.20.1250.20 247 444 4.1E-25 T 28-03-2018 AM348_RS17820 17b1de0da689a55aa8e5677a2d992687 444 Gene3D G3DSA:1.20.1250.20 11 233 1.5E-27 T 28-03-2018 AM348_RS17820 17b1de0da689a55aa8e5677a2d992687 444 Pfam PF07690 Major Facilitator Superfamily 252 433 4.2E-15 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS07405 b4df943b3614dd1c3283dab8be839818 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 28-03-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 AM348_RS07405 b4df943b3614dd1c3283dab8be839818 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 3.0E-26 T 28-03-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS07405 b4df943b3614dd1c3283dab8be839818 101 SUPERFAMILY SSF57716 2 101 3.14E-37 T 28-03-2018 AM348_RS07405 b4df943b3614dd1c3283dab8be839818 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.911 T 28-03-2018 IPR023036 Ribosomal protein S14, bacterial/plastid AM348_RS07405 b4df943b3614dd1c3283dab8be839818 101 Gene3D G3DSA:4.10.830.10 1 101 5.1E-33 T 28-03-2018 AM348_RS08745 c5ca67ccf997438354d1b440bc70fc3d 118 Pfam PF04380 Membrane fusogenic activity 21 97 1.2E-28 T 28-03-2018 IPR007475 Membrane fusogenic activity AM348_RS19535 4714f3a46abd610d6bfdcf543ede1298 124 Pfam PF07233 Protein of unknown function (DUF1425) 33 123 5.0E-27 T 28-03-2018 IPR010824 Protein of unknown function DUF1425 AM348_RS20355 5663e8b08cb102e77b5bbd83d68cf109 94 Pfam PF13031 Protein of unknown function (DUF3892) 5 91 1.1E-23 T 28-03-2018 IPR024997 Protein of unknown function DUF3892 AM348_RS23270 c701dc8ece70eebbefa463d5c4ca48bb 196 Pfam PF01965 DJ-1/PfpI family 4 170 2.4E-46 T 28-03-2018 IPR002818 DJ-1/PfpI AM348_RS23270 c701dc8ece70eebbefa463d5c4ca48bb 196 Gene3D G3DSA:3.40.50.880 1 190 7.8E-40 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS23270 c701dc8ece70eebbefa463d5c4ca48bb 196 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 183 2.2E-61 T 28-03-2018 IPR006287 Protein DJ-1 AM348_RS23270 c701dc8ece70eebbefa463d5c4ca48bb 196 SUPERFAMILY SSF52317 5 188 6.62E-47 T 28-03-2018 IPR029062 Class I glutamine amidotransferase-like AM348_RS22025 503f264c9bb245e72069cfe6a1acd2e5 361 Gene3D G3DSA:3.40.50.300 127 334 3.3E-28 T 28-03-2018 AM348_RS22025 503f264c9bb245e72069cfe6a1acd2e5 361 SUPERFAMILY SSF52540 130 306 1.21E-40 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS22025 503f264c9bb245e72069cfe6a1acd2e5 361 Pfam PF02562 PhoH-like protein 131 334 3.0E-95 T 28-03-2018 IPR003714 PhoH-like protein GO:0005524 AM348_RS11460 c19700a25a4f2ce71ec65d746cc1f34b 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 309 6.6E-37 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS11460 c19700a25a4f2ce71ec65d746cc1f34b 317 Gene3D G3DSA:1.10.3470.10 16 316 2.2E-24 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS17070 1d64c04dd189042f949eb8d0d903bddf 408 TIGRFAM TIGR00843 benE: benzoate transporter 18 402 1.4E-182 T 28-03-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AM348_RS17070 1d64c04dd189042f949eb8d0d903bddf 408 Pfam PF03594 Benzoate membrane transport protein 27 400 8.0E-150 T 28-03-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 AM348_RS14925 bcd7751f97d808808486610cbf7af62b 473 Gene3D G3DSA:1.20.1250.20 261 472 1.1E-16 T 28-03-2018 AM348_RS14925 bcd7751f97d808808486610cbf7af62b 473 Pfam PF07690 Major Facilitator Superfamily 21 411 5.8E-45 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS14925 bcd7751f97d808808486610cbf7af62b 473 SUPERFAMILY SSF103473 15 205 1.57E-57 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS14925 bcd7751f97d808808486610cbf7af62b 473 SUPERFAMILY SSF103473 251 462 1.57E-57 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS14925 bcd7751f97d808808486610cbf7af62b 473 Gene3D G3DSA:1.20.1250.20 10 204 2.2E-32 T 28-03-2018 AM348_RS15630 aff9e6f5bbda43470265c448a3857182 322 Pfam PF05229 Spore Coat Protein U domain 20 160 1.3E-18 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS15630 aff9e6f5bbda43470265c448a3857182 322 Pfam PF05229 Spore Coat Protein U domain 188 318 4.0E-20 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS15630 aff9e6f5bbda43470265c448a3857182 322 SMART SM00972 96 167 0.0022 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS15630 aff9e6f5bbda43470265c448a3857182 322 SMART SM00972 262 319 0.011 T 28-03-2018 IPR007893 Spore coat protein U AM348_RS12530 4dfa7dba1708a99e040f030941e608e7 506 Pfam PF03606 C4-dicarboxylate anaerobic carrier 15 501 1.9E-159 T 28-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 SUPERFAMILY SSF51735 1 182 9.16E-46 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 181 9.9E-48 T 28-03-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 285 1.3E-18 T 28-03-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779|MetaCyc: PWY-81 AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 SUPERFAMILY SSF48179 186 294 1.45E-21 T 28-03-2018 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 Gene3D G3DSA:3.40.50.720 1 185 7.9E-42 T 28-03-2018 AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 Gene3D G3DSA:1.10.1040.10 186 290 4.5E-22 T 28-03-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 AM348_RS17440 280f267ac4097a34a966a6dc84fb9961 307 PIRSF PIRSF000105 1 306 5.5E-78 T 28-03-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 AM348_RS04490 d1384bf9ee6f6f6c1a4e38c9dcd3733b 168 Pfam PF10688 Bacterial inner membrane protein 6 160 7.1E-34 T 28-03-2018 IPR019629 Uncharacterised protein family HI1736/YgjV AM348_RS17320 464f59f23e79a91a4e975f725e3208ad 226 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 2 226 7.1E-124 T 28-03-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS17320 464f59f23e79a91a4e975f725e3208ad 226 Pfam PF02665 Nitrate reductase gamma subunit 6 225 1.4E-78 T 28-03-2018 IPR023234 NarG-like domain AM348_RS17320 464f59f23e79a91a4e975f725e3208ad 226 Gene3D G3DSA:1.20.950.20 2 217 4.1E-42 T 28-03-2018 AM348_RS17320 464f59f23e79a91a4e975f725e3208ad 226 SUPERFAMILY SSF103501 3 225 2.09E-70 T 28-03-2018 IPR023234 NarG-like domain AM348_RS16620 d6889ba83c76b595bd4b0c637b8bd112 76 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 11 71 1.2E-31 T 28-03-2018 IPR014321 Phage shock protein, PspD AM348_RS16620 d6889ba83c76b595bd4b0c637b8bd112 76 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 13 71 4.0E-34 T 28-03-2018 IPR014321 Phage shock protein, PspD AM348_RS03270 67a95af74dc3824e450c235759e09ecb 198 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 11 194 9.4E-60 T 28-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AM348_RS03270 67a95af74dc3824e450c235759e09ecb 198 SUPERFAMILY SSF159709 17 197 5.36E-59 T 28-03-2018 AM348_RS03270 67a95af74dc3824e450c235759e09ecb 198 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 10 196 3.9E-63 T 28-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AM348_RS03270 67a95af74dc3824e450c235759e09ecb 198 PIRSF PIRSF020680 1 198 1.8E-65 T 28-03-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 AM348_RS11305 0bf030b99e4f4273a14795cc02759af6 243 Gene3D G3DSA:3.20.20.70 4 238 1.0E-107 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS11305 0bf030b99e4f4273a14795cc02759af6 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 135.086 T 28-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM348_RS11305 0bf030b99e4f4273a14795cc02759af6 243 SUPERFAMILY SSF63892 4 241 2.75E-103 T 28-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM348_RS11305 0bf030b99e4f4273a14795cc02759af6 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 1.6E-107 T 28-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM348_RS11305 0bf030b99e4f4273a14795cc02759af6 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 9.6E-116 T 28-03-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 AM348_RS07975 de838adbf348a9d8c392322d191fe939 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 1.9E-105 T 28-03-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria AM348_RS07975 de838adbf348a9d8c392322d191fe939 260 Pfam PF02405 Permease MlaE 45 256 2.4E-72 T 28-03-2018 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 AM348_RS02600 231e9e6b8d08e7059de60e64b552232b 341 Gene3D G3DSA:1.10.3470.10 53 327 2.2E-27 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS02600 231e9e6b8d08e7059de60e64b552232b 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 321 1.9E-47 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS16550 b7d5cfbbc251f7d57abf8aac1e6aa7cc 381 SUPERFAMILY SSF69118 239 378 2.08E-20 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS16550 b7d5cfbbc251f7d57abf8aac1e6aa7cc 381 Gene3D G3DSA:1.20.1290.10 70 189 0.033 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS16550 b7d5cfbbc251f7d57abf8aac1e6aa7cc 381 SUPERFAMILY SSF69118 78 186 1.93E-10 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS16550 b7d5cfbbc251f7d57abf8aac1e6aa7cc 381 Gene3D G3DSA:1.20.1290.10 237 380 1.7E-17 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS07965 728a581ea657be0d3ce8b87bf961c561 325 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 1.6E-100 T 28-03-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 AM348_RS07965 728a581ea657be0d3ce8b87bf961c561 325 Pfam PF01699 Sodium/calcium exchanger protein 4 143 4.7E-27 T 28-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM348_RS07965 728a581ea657be0d3ce8b87bf961c561 325 Pfam PF01699 Sodium/calcium exchanger protein 175 317 4.5E-27 T 28-03-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 AM348_RS09945 b47660907897f3aab2807ff6d37d077f 109 Pfam PF04287 tRNA pseudouridine synthase C 7 103 1.0E-34 T 28-03-2018 IPR023376 YqcC-like domain AM348_RS09945 b47660907897f3aab2807ff6d37d077f 109 Gene3D G3DSA:1.20.1440.40 3 104 1.1E-39 T 28-03-2018 IPR023376 YqcC-like domain AM348_RS09945 b47660907897f3aab2807ff6d37d077f 109 PIRSF PIRSF006257 1 108 4.0E-40 T 28-03-2018 IPR007384 Protein of unknown function UCP006257 AM348_RS09945 b47660907897f3aab2807ff6d37d077f 109 SUPERFAMILY SSF158452 1 107 1.83E-38 T 28-03-2018 IPR023376 YqcC-like domain AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 Pfam PF00293 NUDIX domain 7 146 1.1E-26 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.6E-7 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.6E-7 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 Gene3D G3DSA:3.90.79.10 1 164 4.0E-35 T 28-03-2018 AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 SUPERFAMILY SSF55811 5 158 6.23E-33 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS09745 63a9d1bed8e78bbf9fd4c438797fee73 176 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 38.048 T 28-03-2018 IPR022927 RNA pyrophosphohydrolase RppH AM348_RS08280 ece80b2cc6a342ac65b0a0a2e79de5ed 444 Gene3D G3DSA:1.20.1250.20 6 229 3.9E-36 T 28-03-2018 AM348_RS08280 ece80b2cc6a342ac65b0a0a2e79de5ed 444 Pfam PF07690 Major Facilitator Superfamily 23 364 1.0E-48 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS08280 ece80b2cc6a342ac65b0a0a2e79de5ed 444 PIRSF PIRSF002808 3 444 7.6E-37 T 28-03-2018 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS08280 ece80b2cc6a342ac65b0a0a2e79de5ed 444 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 25 434 2.3E-138 T 28-03-2018 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS08280 ece80b2cc6a342ac65b0a0a2e79de5ed 444 Gene3D G3DSA:1.20.1250.20 239 444 1.5E-25 T 28-03-2018 AM348_RS08280 ece80b2cc6a342ac65b0a0a2e79de5ed 444 SUPERFAMILY SSF103473 6 443 2.35E-80 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 SMART SM00448 5 115 1.4E-27 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 Gene3D G3DSA:3.40.50.2300 3 133 9.2E-26 T 28-03-2018 AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 Pfam PF00072 Response regulator receiver domain 7 115 4.3E-18 T 28-03-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 SUPERFAMILY SSF46894 138 237 2.69E-26 T 28-03-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 236 4.8E-21 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 SMART SM00862 160 236 2.9E-19 T 28-03-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 Gene3D G3DSA:1.10.10.10 134 243 3.0E-29 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS18000 a5e3059455fda38f9b18488a02e2632a 247 SUPERFAMILY SSF52172 3 126 1.04E-29 T 28-03-2018 IPR011006 CheY-like superfamily AM348_RS09050 3532131232da11bb52391c4dcb815b67 103 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 19 77 4.2E-18 T 28-03-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 SUPERFAMILY SSF103473 5 239 6.02E-41 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 Gene3D G3DSA:1.20.1250.20 3 201 7.7E-35 T 28-03-2018 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 Gene3D G3DSA:1.20.1250.20 202 398 1.4E-24 T 28-03-2018 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 Pfam PF07690 Major Facilitator Superfamily 11 302 3.0E-34 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 PRINTS PR01035 Tetracycline resistance protein signature 136 158 1.0E-10 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 PRINTS PR01035 Tetracycline resistance protein signature 17 33 1.0E-10 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 PRINTS PR01035 Tetracycline resistance protein signature 106 127 1.0E-10 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 PRINTS PR01035 Tetracycline resistance protein signature 79 103 1.0E-10 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 PRINTS PR01035 Tetracycline resistance protein signature 341 364 1.0E-10 T 28-03-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 AM348_RS23535 875e6d99713e27486b0607702ab861e4 398 SUPERFAMILY SSF103473 209 393 4.45E-27 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS22790 15b6d171ef2d22cc935da48b080eb428 219 Gene3D G3DSA:1.10.3720.10 1 216 2.0E-35 T 28-03-2018 AM348_RS22790 15b6d171ef2d22cc935da48b080eb428 219 SUPERFAMILY SSF161098 8 206 1.7E-40 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS22790 15b6d171ef2d22cc935da48b080eb428 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 216 2.0E-22 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS14715 3dfe13f495786de1a08dd2f8fa90f660 93 Pfam PF05449 Putative 3TM holin, Phage_holin_3 10 88 5.2E-24 T 28-03-2018 IPR008473 Putative 3TM holin, Phage holin 3 AM348_RS16380 387189397d12783b2996a5c9cfde02aa 212 Pfam PF03922 OmpW family 23 212 9.9E-72 T 28-03-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 AM348_RS16380 387189397d12783b2996a5c9cfde02aa 212 SUPERFAMILY SSF56925 23 212 1.15E-25 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS16380 387189397d12783b2996a5c9cfde02aa 212 Gene3D G3DSA:2.40.160.20 22 212 1.8E-34 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS02990 71f5876001ba2dd213eab9acc2ce6e24 381 ProSitePatterns PS00336 Beta-lactamase class-C active site. 80 87 - T 28-03-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 AM348_RS02990 71f5876001ba2dd213eab9acc2ce6e24 381 SUPERFAMILY SSF56601 24 380 2.33E-103 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS02990 71f5876001ba2dd213eab9acc2ce6e24 381 Pfam PF00144 Beta-lactamase 32 379 1.3E-86 T 28-03-2018 IPR001466 Beta-lactamase-related AM348_RS02990 71f5876001ba2dd213eab9acc2ce6e24 381 Gene3D G3DSA:3.40.710.10 19 381 8.1E-74 T 28-03-2018 AM348_RS04940 006c19d2d3368ea2e4aa8a85655c6056 246 SUPERFAMILY SSF69618 1 245 1.7E-50 T 28-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04940 006c19d2d3368ea2e4aa8a85655c6056 246 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 2.3E-37 T 28-03-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 AM348_RS04940 006c19d2d3368ea2e4aa8a85655c6056 246 Gene3D G3DSA:3.40.50.10090 1 119 8.2E-16 T 28-03-2018 AM348_RS04940 006c19d2d3368ea2e4aa8a85655c6056 246 Gene3D G3DSA:3.40.50.10090 121 246 1.2E-21 T 28-03-2018 AM348_RS14740 7d3eeb4d911bf6d55783810a8d746b9f 116 Pfam PF01844 HNH endonuclease 66 110 1.7E-15 T 28-03-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AM348_RS14740 7d3eeb4d911bf6d55783810a8d746b9f 116 Gene3D G3DSA:3.40.1800.10 44 115 2.5E-17 T 28-03-2018 AM348_RS14740 7d3eeb4d911bf6d55783810a8d746b9f 116 SMART SM00507 53 107 1.1E-12 T 28-03-2018 IPR003615 HNH nuclease AM348_RS07985 1d4433d71535c5253fba87ff86aef7af 211 Pfam PF05494 MlaC protein 33 198 1.0E-54 T 28-03-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AM348_RS07985 1d4433d71535c5253fba87ff86aef7af 211 PIRSF PIRSF004649 1 211 7.9E-64 T 28-03-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC AM348_RS07985 1d4433d71535c5253fba87ff86aef7af 211 Gene3D G3DSA:3.10.450.50 26 74 6.2E-5 T 28-03-2018 AM348_RS07985 1d4433d71535c5253fba87ff86aef7af 211 Gene3D G3DSA:3.10.450.50 75 172 2.3E-22 T 28-03-2018 AM348_RS04975 8401f140dea31dac9b47740449843b26 461 Pfam PF00324 Amino acid permease 16 428 1.8E-102 T 28-03-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 AM348_RS04975 8401f140dea31dac9b47740449843b26 461 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 28-03-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 AM348_RS04975 8401f140dea31dac9b47740449843b26 461 PIRSF PIRSF006060 1 460 1.7E-63 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS21300 f94a08fcf778be7d9a7ab925ec2b70ee 234 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 230 2.1E-58 T 28-03-2018 IPR006214 Bax inhibitor 1-related AM348_RS10390 d0a58e89822b237a1b651ad7e90a230f 136 ProDom PD021295 MATURATION HYDROGENLYASE FORMATE HYCH LYASE HYCE PROCESSING OXIDOREDUCTASE J COMPONENT 1 133 1.0E-71 T 28-03-2018 IPR010005 Formate hydrogenlyase maturation HycH AM348_RS10390 d0a58e89822b237a1b651ad7e90a230f 136 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 4 133 1.0E-54 T 28-03-2018 IPR010005 Formate hydrogenlyase maturation HycH AM348_RS03050 17aff5ab8ea4b9cbf8dc2933eae4eefe 421 PIRSF PIRSF006060 1 410 5.3E-56 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS03050 17aff5ab8ea4b9cbf8dc2933eae4eefe 421 Pfam PF13520 Amino acid permease 8 389 2.1E-29 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS17305 ceed07406bc3e6f0831495ba4fefb783 190 Gene3D G3DSA:2.30.110.10 1 187 5.2E-35 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS17305 ceed07406bc3e6f0831495ba4fefb783 190 SUPERFAMILY SSF50475 2 184 9.32E-37 T 28-03-2018 IPR012349 FMN-binding split barrel GO:0048037 AM348_RS17305 ceed07406bc3e6f0831495ba4fefb783 190 Pfam PF01613 Flavin reductase like domain 19 155 2.9E-14 T 28-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM348_RS17305 ceed07406bc3e6f0831495ba4fefb783 190 SMART SM00903 14 158 5.3E-15 T 28-03-2018 IPR002563 Flavin reductase like domain GO:0010181 AM348_RS21845 ec226ebf66f9fe3f210ff5452711b43b 559 PIRSF PIRSF001294 1 559 1.6E-234 T 28-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM348_RS21845 ec226ebf66f9fe3f210ff5452711b43b 559 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 558 2.1E-283 T 28-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM348_RS21845 ec226ebf66f9fe3f210ff5452711b43b 559 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.061 T 28-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM348_RS21845 ec226ebf66f9fe3f210ff5452711b43b 559 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 5.5E-239 T 28-03-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 AM348_RS13375 8d0814bbf3d4de4767fbcd488569faca 152 PIRSF PIRSF006187 1 152 6.0E-59 T 28-03-2018 IPR009736 Protein of unknown function DUF1307 AM348_RS13375 8d0814bbf3d4de4767fbcd488569faca 152 Pfam PF06998 Protein of unknown function (DUF1307) 28 149 2.6E-40 T 28-03-2018 IPR009736 Protein of unknown function DUF1307 AM348_RS13375 8d0814bbf3d4de4767fbcd488569faca 152 SUPERFAMILY SSF160704 24 152 8.5E-42 T 28-03-2018 IPR009736 Protein of unknown function DUF1307 AM348_RS13375 8d0814bbf3d4de4767fbcd488569faca 152 Gene3D G3DSA:3.30.1830.10 28 151 4.0E-39 T 28-03-2018 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 Pfam PF00293 NUDIX domain 5 141 6.7E-18 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 Gene3D G3DSA:3.90.79.10 1 147 1.4E-29 T 28-03-2018 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 9.5E-52 T 28-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 9.5E-52 T 28-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 9.5E-52 T 28-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 9.5E-52 T 28-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 9.5E-52 T 28-03-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 AM348_RS15120 ea10c45254846aa50376a8aa7e47d146 147 SUPERFAMILY SSF55811 3 140 4.33E-23 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS03225 ca2c8d5fff8d32fbc5dc9ce2c2946416 785 Gene3D G3DSA:3.40.50.300 60 609 1.2E-29 T 28-03-2018 AM348_RS03225 ca2c8d5fff8d32fbc5dc9ce2c2946416 785 Pfam PF00350 Dynamin family 81 291 5.4E-16 T 28-03-2018 IPR022812 Dynamin superfamily AM348_RS03225 ca2c8d5fff8d32fbc5dc9ce2c2946416 785 SUPERFAMILY SSF52540 67 139 5.93E-28 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS03225 ca2c8d5fff8d32fbc5dc9ce2c2946416 785 SUPERFAMILY SSF52540 216 355 5.93E-28 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS16210 b889e195ec0808bb861815f2d6a1229b 483 Pfam PF06381 Protein of unknown function (DUF1073) 75 421 2.4E-18 T 28-03-2018 IPR024459 Protein of unknown function DUF1073 AM348_RS19290 46c006b0732b4143947cfbcd11a1115d 212 Pfam PF01810 LysE type translocator 18 209 5.8E-53 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS19290 46c006b0732b4143947cfbcd11a1115d 212 PIRSF PIRSF006324 4 212 1.8E-61 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS14180 fc041edc17bb495eaf45bb751f60cf88 309 Pfam PF03734 L,D-transpeptidase catalytic domain 97 229 1.0E-16 T 28-03-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 AM348_RS14180 fc041edc17bb495eaf45bb751f60cf88 309 Gene3D G3DSA:2.40.440.10 91 231 1.6E-28 T 28-03-2018 AM348_RS14180 fc041edc17bb495eaf45bb751f60cf88 309 SUPERFAMILY SSF141523 96 145 8.11E-27 T 28-03-2018 AM348_RS14180 fc041edc17bb495eaf45bb751f60cf88 309 SUPERFAMILY SSF141523 174 231 8.11E-27 T 28-03-2018 AM348_RS20915 6729fbb53cdc4708c56fe14265abce5b 162 Pfam PF10767 Protein of unknown function (DUF2593) 21 160 2.9E-63 T 28-03-2018 IPR019703 Protein of unknown function DUF2593 AM348_RS21770 cc13589fab9d7c891237cc66a1c4ab7f 348 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 6 160 2.3E-41 T 28-03-2018 IPR017516 AbrB duplication AM348_RS21770 cc13589fab9d7c891237cc66a1c4ab7f 348 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 185 339 3.6E-43 T 28-03-2018 IPR017516 AbrB duplication AM348_RS21770 cc13589fab9d7c891237cc66a1c4ab7f 348 Pfam PF05145 Transition state regulatory protein AbrB 29 339 1.1E-95 T 28-03-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AM348_RS21770 cc13589fab9d7c891237cc66a1c4ab7f 348 PIRSF PIRSF038991 1 347 3.7E-90 T 28-03-2018 IPR007820 AbrB family GO:0010468|GO:0016021 AM348_RS08780 7d6d4656b45fbf50253d1b7224b8fe91 262 SUPERFAMILY SSF53213 5 261 7.32E-92 T 28-03-2018 AM348_RS08780 7d6d4656b45fbf50253d1b7224b8fe91 262 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 259 1.1E-26 T 28-03-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 AM348_RS08780 7d6d4656b45fbf50253d1b7224b8fe91 262 PIRSF PIRSF006157 1 262 1.8E-94 T 28-03-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 AM348_RS08780 7d6d4656b45fbf50253d1b7224b8fe91 262 Gene3D G3DSA:3.40.830.10 1 262 4.9E-85 T 28-03-2018 AM348_RS06980 c5468808a66210a99b5cff397ebbbea3 78 Pfam PF09012 FeoC like transcriptional regulator 3 69 9.5E-17 T 28-03-2018 IPR015102 Transcriptional regulator HTH-type, FeoC AM348_RS06980 c5468808a66210a99b5cff397ebbbea3 78 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 78 24.566 T 28-03-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor AM348_RS06980 c5468808a66210a99b5cff397ebbbea3 78 SUPERFAMILY SSF46785 1 76 1.34E-25 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS06980 c5468808a66210a99b5cff397ebbbea3 78 Gene3D G3DSA:1.10.10.10 1 76 1.8E-20 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 Gene3D G3DSA:1.20.1330.10 40 206 4.1E-50 T 28-03-2018 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 Gene3D G3DSA:1.20.1330.10 226 399 1.8E-22 T 28-03-2018 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 1.7E-44 T 28-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 SUPERFAMILY SSF64518 1 427 1.22E-107 T 28-03-2018 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 PRINTS PR00207 Flagellin signature 76 95 8.1E-31 T 28-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 PRINTS PR00207 Flagellin signature 111 134 8.1E-31 T 28-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 PRINTS PR00207 Flagellin signature 37 54 8.1E-31 T 28-03-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 AM348_RS14485 d247245686fe5cf2a89ebc3b0e611dd8 427 Pfam PF00700 Bacterial flagellin C-terminal helical region 342 426 3.5E-31 T 28-03-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 AM348_RS03185 82771dba44291217407afcd697cef795 445 Pfam PF13520 Amino acid permease 12 403 4.1E-51 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS03185 82771dba44291217407afcd697cef795 445 PIRSF PIRSF006060 2 436 2.8E-63 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS05540 8e4b42df2a92a07cb4371d5caaa0fd12 337 Pfam PF14486 Domain of unknown function (DUF4432) 34 335 2.4E-15 T 28-03-2018 IPR027839 Protein of unknown function DUF4432 AM348_RS05540 8e4b42df2a92a07cb4371d5caaa0fd12 337 SUPERFAMILY SSF74650 40 334 2.35E-5 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS05540 8e4b42df2a92a07cb4371d5caaa0fd12 337 Gene3D G3DSA:2.70.98.10 23 337 3.1E-18 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 Pfam PF02056 Family 4 glycosyl hydrolase 6 188 1.2E-78 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 168 179 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 75 91 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 97 110 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 194 206 1.6E-40 T 28-03-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 Gene3D G3DSA:3.90.1820.10 2 312 5.7E-68 T 28-03-2018 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 Gene3D G3DSA:3.90.1820.10 313 451 1.6E-38 T 28-03-2018 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 142 173 - T 28-03-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 SUPERFAMILY SSF51735 5 171 7.15E-52 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 SUPERFAMILY SSF56327 172 449 3.72E-71 T 28-03-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 AM348_RS03165 362c77317bda29d0725e7ac48fca1d44 451 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 199 421 1.2E-61 T 28-03-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 AM348_RS21055 4f7429229610eec6814a62eff3d8dd00 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 302 3.5E-31 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21055 4f7429229610eec6814a62eff3d8dd00 303 SUPERFAMILY SSF161098 96 283 2.22E-28 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21055 4f7429229610eec6814a62eff3d8dd00 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 69 3.2E-13 T 28-03-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain AM348_RS21055 4f7429229610eec6814a62eff3d8dd00 303 Gene3D G3DSA:1.10.3720.10 26 291 7.6E-45 T 28-03-2018 AM348_RS00490 725e7303b32980fdebacda3d6585c440 354 Pfam PF00419 Fimbrial protein 206 354 1.7E-19 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00490 725e7303b32980fdebacda3d6585c440 354 SUPERFAMILY SSF49401 210 354 1.49E-15 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00490 725e7303b32980fdebacda3d6585c440 354 Gene3D G3DSA:2.60.40.1090 199 354 6.6E-14 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS01965 29619d926e645fc0cd94bbdccaf6df4c 716 Pfam PF02554 Carbon starvation protein CstA 34 405 4.2E-161 T 28-03-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 AM348_RS01965 29619d926e645fc0cd94bbdccaf6df4c 716 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 486 614 2.6E-34 T 28-03-2018 IPR025299 CstA, C-terminal domain AM348_RS16290 ba60772723b8dc9a319d54a17e3708ed 116 Pfam PF05939 Phage minor tail protein 3 114 5.2E-35 T 28-03-2018 IPR010265 Bacteriophage lambda, GpM, minor tail AM348_RS00360 1a10c8bd38cd47d55e40f52af587195f 154 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 108 154 0.001 T 28-03-2018 AM348_RS00360 1a10c8bd38cd47d55e40f52af587195f 154 Pfam PF04191 Phospholipid methyltransferase 39 141 5.3E-15 T 28-03-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 AM348_RS21575 4634d59199778872d00b6f078c65570b 97 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 5 97 8.6E-40 T 28-03-2018 IPR011846 Cyd operon protein YbgE AM348_RS21575 4634d59199778872d00b6f078c65570b 97 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 17 95 2.4E-32 T 28-03-2018 IPR011846 Cyd operon protein YbgE AM348_RS06265 d192f383341486cc37d8134701b3620e 400 Gene3D G3DSA:1.20.1250.20 201 399 4.6E-21 T 28-03-2018 AM348_RS06265 d192f383341486cc37d8134701b3620e 400 TIGRFAM TIGR00890 2A0111: oxalate/formate antiporter family transporter 9 383 6.5E-141 T 28-03-2018 IPR004741 Oxalate/formate antiporter family transporter GO:0005215|GO:0006810|GO:0016021 AM348_RS06265 d192f383341486cc37d8134701b3620e 400 SUPERFAMILY SSF103473 8 393 3.01E-49 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS06265 d192f383341486cc37d8134701b3620e 400 Gene3D G3DSA:1.20.1250.20 6 199 2.5E-21 T 28-03-2018 AM348_RS06265 d192f383341486cc37d8134701b3620e 400 Pfam PF07690 Major Facilitator Superfamily 26 230 1.7E-17 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS13410 f94ec535f8031d819738dcbe9352de85 345 Gene3D G3DSA:2.60.40.1090 195 345 1.9E-9 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS13410 f94ec535f8031d819738dcbe9352de85 345 SUPERFAMILY SSF49401 205 344 3.4E-7 T 28-03-2018 IPR008966 Adhesion domain AM348_RS18415 4160262b277464b7d8d1a39062291751 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 28-03-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 Pfam PF00255 Glutathione peroxidase 4 111 1.6E-40 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 PIRSF PIRSF000303 1 160 1.8E-66 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 Gene3D G3DSA:3.40.30.10 2 160 1.6E-46 T 28-03-2018 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 PRINTS PR01011 Glutathione peroxidase family signature 122 131 8.3E-21 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 8.3E-21 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 8.3E-21 T 28-03-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 28-03-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 AM348_RS18415 4160262b277464b7d8d1a39062291751 160 SUPERFAMILY SSF52833 3 158 6.51E-61 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS02900 a66af1c48e3247ae5c95d2e6c92a131a 442 SMART SM00646 252 411 3.9E-73 T 28-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM348_RS02900 a66af1c48e3247ae5c95d2e6c92a131a 442 SUPERFAMILY SSF53187 338 415 2.01E-53 T 28-03-2018 AM348_RS02900 a66af1c48e3247ae5c95d2e6c92a131a 442 SUPERFAMILY SSF53187 190 286 2.01E-53 T 28-03-2018 AM348_RS02900 a66af1c48e3247ae5c95d2e6c92a131a 442 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 192 411 2.2E-48 T 28-03-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 AM348_RS02900 a66af1c48e3247ae5c95d2e6c92a131a 442 Gene3D G3DSA:3.40.630.40 187 419 2.5E-58 T 28-03-2018 AM348_RS11270 080efdaeec3387b6ab618122bd50e547 154 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 4.0E-33 T 28-03-2018 IPR007359 Positive regulator of sigma(E), RseC/MucC AM348_RS11270 080efdaeec3387b6ab618122bd50e547 154 PIRSF PIRSF004923 1 151 5.7E-42 T 28-03-2018 IPR026268 Protein RseC AM348_RS11330 9f90ebc9031131d91ca113e712a853db 454 Pfam PF00367 phosphotransferase system, EIIB 10 42 2.1E-10 T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS11330 9f90ebc9031131d91ca113e712a853db 454 Gene3D G3DSA:3.30.1360.60 6 82 3.6E-22 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS11330 9f90ebc9031131d91ca113e712a853db 454 SUPERFAMILY SSF55604 8 81 5.49E-16 T 28-03-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 AM348_RS11330 9f90ebc9031131d91ca113e712a853db 454 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 28-03-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 AM348_RS11330 9f90ebc9031131d91ca113e712a853db 454 Pfam PF02378 Phosphotransferase system, EIIC 118 392 1.3E-33 T 28-03-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 AM348_RS20570 9c5bb985699320092592ce6e6e0a8898 546 Pfam PF02470 MlaD protein 42 133 1.3E-9 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS20570 9c5bb985699320092592ce6e6e0a8898 546 Pfam PF02470 MlaD protein 285 389 1.0E-13 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS20570 9c5bb985699320092592ce6e6e0a8898 546 Pfam PF02470 MlaD protein 158 222 2.8E-7 T 28-03-2018 IPR003399 Mce/MlaD AM348_RS20570 9c5bb985699320092592ce6e6e0a8898 546 Gene3D G3DSA:1.20.120.570 402 535 1.7E-4 T 28-03-2018 AM348_RS06720 30030cb22d8a65a6ed867477fc470321 198 Pfam PF03602 Conserved hypothetical protein 95 12 188 1.6E-62 T 28-03-2018 AM348_RS06720 30030cb22d8a65a6ed867477fc470321 198 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 1 190 3.1E-75 T 28-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AM348_RS06720 30030cb22d8a65a6ed867477fc470321 198 Gene3D G3DSA:3.40.50.150 1 198 4.6E-33 T 28-03-2018 AM348_RS06720 30030cb22d8a65a6ed867477fc470321 198 SUPERFAMILY SSF53335 11 189 2.2E-52 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS06720 30030cb22d8a65a6ed867477fc470321 198 PIRSF PIRSF004553 11 191 2.0E-59 T 28-03-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 AM348_RS04335 4024c5fd7e82e0a7afb6d3d84898dcc2 200 Pfam PF07305 Protein of unknown function (DUF1454) 9 192 3.4E-83 T 28-03-2018 IPR009918 Protein of unknown function DUF1454 AM348_RS12935 4e4f2eb7bb4106e6e88fd4773da69fc2 70 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 1.7E-18 T 28-03-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AM348_RS12935 4e4f2eb7bb4106e6e88fd4773da69fc2 70 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 1.7E-15 T 28-03-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 AM348_RS14015 2c540826f5d6fc71666a35708fd15d4e 163 Pfam PF15953 Putative propanediol utilisation 7 158 9.7E-49 T 28-03-2018 IPR030992 Microcompartment protein PduM GO:0005198 AM348_RS14015 2c540826f5d6fc71666a35708fd15d4e 163 TIGRFAM TIGR04493 microcomp_PduM: microcompartment protein PduM 7 159 1.4E-61 T 28-03-2018 IPR030992 Microcompartment protein PduM GO:0005198 AM348_RS04110 8433fa0b96707de536e4802695874128 305 SUPERFAMILY SSF46785 1 86 1.27E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS04110 8433fa0b96707de536e4802695874128 305 Gene3D G3DSA:3.40.190.10 176 264 5.6E-29 T 28-03-2018 AM348_RS04110 8433fa0b96707de536e4802695874128 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.5E-21 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04110 8433fa0b96707de536e4802695874128 305 SUPERFAMILY SSF53850 89 295 1.29E-46 T 28-03-2018 AM348_RS04110 8433fa0b96707de536e4802695874128 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04110 8433fa0b96707de536e4802695874128 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04110 8433fa0b96707de536e4802695874128 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-8 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS04110 8433fa0b96707de536e4802695874128 305 Pfam PF03466 LysR substrate binding domain 89 292 1.8E-53 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS04110 8433fa0b96707de536e4802695874128 305 Gene3D G3DSA:3.40.190.10 87 175 5.2E-21 T 28-03-2018 AM348_RS04110 8433fa0b96707de536e4802695874128 305 Gene3D G3DSA:1.10.10.10 1 82 4.5E-22 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS09310 5e5196fb0146a1ede92c68182e891aa2 252 Pfam PF01435 Peptidase family M48 79 245 1.2E-25 T 28-03-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 AM348_RS09310 5e5196fb0146a1ede92c68182e891aa2 252 Gene3D G3DSA:3.30.2010.10 34 147 1.9E-18 T 28-03-2018 AM348_RS10480 b2a358d92322b0cdbea1eaa89bd9c7c3 187 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 181 8.0E-111 T 28-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM348_RS10480 b2a358d92322b0cdbea1eaa89bd9c7c3 187 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 7 171 7.2E-76 T 28-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM348_RS10480 b2a358d92322b0cdbea1eaa89bd9c7c3 187 PIRSF PIRSF038321 2 182 6.0E-88 T 28-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM348_RS11130 325353c7fdb51c672df0d18fd19611a9 112 SUPERFAMILY SSF69754 3 109 1.24E-33 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS11130 325353c7fdb51c672df0d18fd19611a9 112 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 91 4.5E-22 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS11130 325353c7fdb51c672df0d18fd19611a9 112 Gene3D G3DSA:3.30.160.100 2 92 2.6E-27 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS11130 325353c7fdb51c672df0d18fd19611a9 112 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 4.8E-35 T 28-03-2018 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 AM348_RS17655 2a4485afa73d54241220cf2a6fd3b56d 278 SUPERFAMILY SSF103481 178 274 1.57E-9 T 28-03-2018 AM348_RS17655 2a4485afa73d54241220cf2a6fd3b56d 278 Pfam PF00892 EamA-like transporter family 140 269 3.4E-12 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS11745 9c1f24581e4f667653fbbf1ec6cf672e 344 PIRSF PIRSF026343 9 344 3.9E-144 T 28-03-2018 IPR014524 Outer membrane protein assembly factor BamC AM348_RS11745 9c1f24581e4f667653fbbf1ec6cf672e 344 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 343 38.94 T 28-03-2018 IPR014524 Outer membrane protein assembly factor BamC AM348_RS11745 9c1f24581e4f667653fbbf1ec6cf672e 344 Pfam PF06804 NlpB/DapX lipoprotein 40 342 3.8E-111 T 28-03-2018 IPR010653 NlpB/DapX lipoprotein AM348_RS02430 08dcdbc7a70288d28f9d72f57680c553 33 Pfam PF08052 PyrBI operon leader peptide 1 33 1.8E-24 T 28-03-2018 IPR012602 PyrBI operon leader peptide GO:0019856 AM348_RS02430 08dcdbc7a70288d28f9d72f57680c553 33 PIRSF PIRSF003249 1 33 1.6E-26 T 28-03-2018 IPR012602 PyrBI operon leader peptide GO:0019856 AM348_RS02630 5ebbc69da32989bbe96d1f0d992ab659 69 Pfam PF16277 Domain of unknown function (DUF4926) 6 62 1.5E-22 T 28-03-2018 IPR032568 Protein of unknown function DUF4926 AM348_RS10795 b7cf8ff5169e48271a7b4d7efc1325c5 370 Gene3D G3DSA:3.40.50.2000 13 175 7.0E-7 T 28-03-2018 AM348_RS10795 b7cf8ff5169e48271a7b4d7efc1325c5 370 Gene3D G3DSA:3.40.50.2000 176 361 8.9E-29 T 28-03-2018 AM348_RS10795 b7cf8ff5169e48271a7b4d7efc1325c5 370 Pfam PF13439 Glycosyltransferase Family 4 18 177 1.7E-16 T 28-03-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193 AM348_RS10795 b7cf8ff5169e48271a7b4d7efc1325c5 370 SUPERFAMILY SSF53756 8 365 4.34E-59 T 28-03-2018 AM348_RS10795 b7cf8ff5169e48271a7b4d7efc1325c5 370 Pfam PF00534 Glycosyl transferases group 1 198 329 5.1E-21 T 28-03-2018 IPR001296 Glycosyl transferase, family 1 AM348_RS02740 1763a3a78f70e91bbb7f4a6df2002e3d 216 Pfam PF04225 Opacity-associated protein A LysM-like domain 131 215 7.7E-35 T 28-03-2018 IPR007340 Opacity-associated protein A AM348_RS02740 1763a3a78f70e91bbb7f4a6df2002e3d 216 Pfam PF08525 Opacity-associated protein A N-terminal motif 23 50 4.4E-9 T 28-03-2018 IPR013731 Opacity-associated protein A, N-terminal AM348_RS14530 12a530de3c13e7e1689353e1988047e5 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 3.5E-38 T 28-03-2018 AM348_RS13735 65e58bf7d0d111235783df3f52c5b592 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 233 6.0E-73 T 28-03-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 AM348_RS13735 65e58bf7d0d111235783df3f52c5b592 321 Gene3D G3DSA:3.40.50.720 1 159 9.3E-10 T 28-03-2018 AM348_RS13735 65e58bf7d0d111235783df3f52c5b592 321 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 3 314 49.209 T 28-03-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00010+1.1.1.27|KEGG: 00051+1.1.1.271|KEGG: 00270+1.1.1.27|KEGG: 00520+1.1.1.271|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-66|MetaCyc: PWY-6901|Reactome: R-HSA-6787639 AM348_RS13735 65e58bf7d0d111235783df3f52c5b592 321 SUPERFAMILY SSF51735 2 319 6.53E-74 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS13735 65e58bf7d0d111235783df3f52c5b592 321 Gene3D G3DSA:3.90.25.10 160 321 3.0E-45 T 28-03-2018 AM348_RS04825 6dba03aa81db65d0fd8eb35c5dfc73b0 268 Pfam PF01738 Dienelactone hydrolase family 41 264 2.2E-77 T 28-03-2018 IPR002925 Dienelactone hydrolase GO:0016787 AM348_RS04825 6dba03aa81db65d0fd8eb35c5dfc73b0 268 Gene3D G3DSA:3.40.50.1820 26 264 9.9E-43 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS04825 6dba03aa81db65d0fd8eb35c5dfc73b0 268 SUPERFAMILY SSF53474 32 263 2.55E-48 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS14695 60aeab5f86a1a36b52a9f3e92bb4aa54 192 Pfam PF06576 Protein of unknown function (DUF1133) 1 176 1.6E-99 T 28-03-2018 IPR010557 Protein of unknown function DUF1133 AM348_RS21830 a5d8f9b2c99de76bded8c7f741064ab6 184 Pfam PF08349 Protein of unknown function (DUF1722) 58 175 8.8E-37 T 28-03-2018 IPR013560 Domain of unknown function DUF1722 AM348_RS17275 c4077439ddb5cc198a4fa045524d42fa 205 SUPERFAMILY SSF47616 80 202 6.54E-17 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS17275 c4077439ddb5cc198a4fa045524d42fa 205 Pfam PF13409 Glutathione S-transferase, N-terminal domain 17 74 3.7E-6 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS17275 c4077439ddb5cc198a4fa045524d42fa 205 Gene3D G3DSA:3.40.30.10 1 99 2.8E-13 T 28-03-2018 AM348_RS17275 c4077439ddb5cc198a4fa045524d42fa 205 SUPERFAMILY SSF52833 2 79 7.48E-11 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS17275 c4077439ddb5cc198a4fa045524d42fa 205 Gene3D G3DSA:1.20.1050.10 100 200 4.5E-12 T 28-03-2018 AM348_RS00060 33c2d448970f7b978456c12feea52d82 158 Gene3D G3DSA:2.40.50.140 1 70 7.5E-14 T 28-03-2018 AM348_RS00060 33c2d448970f7b978456c12feea52d82 158 Pfam PF00313 'Cold-shock' DNA-binding domain 2 62 7.3E-9 T 28-03-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 AM348_RS00060 33c2d448970f7b978456c12feea52d82 158 SUPERFAMILY SSF50249 2 63 1.93E-10 T 28-03-2018 IPR012340 Nucleic acid-binding, OB-fold AM348_RS13450 9fda65721331a41efc2d0bdd4eae0c20 350 SMART SM01133 68 326 1.3E-42 T 28-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS13450 9fda65721331a41efc2d0bdd4eae0c20 350 SUPERFAMILY SSF51569 56 242 1.12E-65 T 28-03-2018 AM348_RS13450 9fda65721331a41efc2d0bdd4eae0c20 350 SUPERFAMILY SSF51569 270 344 1.12E-65 T 28-03-2018 AM348_RS13450 9fda65721331a41efc2d0bdd4eae0c20 350 Pfam PF01791 DeoC/LacD family aldolase 69 326 5.1E-74 T 28-03-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 AM348_RS13450 9fda65721331a41efc2d0bdd4eae0c20 350 Gene3D G3DSA:3.20.20.70 52 345 8.0E-66 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS17960 bd7ae031063b2f6b80387019bf42196a 398 Gene3D G3DSA:1.20.1250.20 206 398 1.5E-17 T 28-03-2018 AM348_RS17960 bd7ae031063b2f6b80387019bf42196a 398 Pfam PF07690 Major Facilitator Superfamily 28 363 1.3E-40 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS17960 bd7ae031063b2f6b80387019bf42196a 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 17 394 2.2E-87 T 28-03-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 AM348_RS17960 bd7ae031063b2f6b80387019bf42196a 398 Gene3D G3DSA:1.20.1250.20 18 205 2.2E-29 T 28-03-2018 AM348_RS17960 bd7ae031063b2f6b80387019bf42196a 398 SUPERFAMILY SSF103473 16 396 1.31E-61 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Pfam PF14579 Helix-hairpin-helix motif 808 897 5.3E-25 T 28-03-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Pfam PF01336 OB-fold nucleic acid binding domain 1000 1071 3.3E-8 T 28-03-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 SMART SM00481 7 74 1.5E-25 T 28-03-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 734 8.1E-177 T 28-03-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Gene3D G3DSA:2.40.50.140 979 1074 4.7E-16 T 28-03-2018 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 SUPERFAMILY SSF89550 6 263 1.12E-14 T 28-03-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Gene3D G3DSA:3.20.20.140 1 246 3.1E-37 T 28-03-2018 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Gene3D G3DSA:1.10.150.280 780 894 4.5E-9 T 28-03-2018 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1031 0.0 T 28-03-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS00695 cf08033a5cc9f3ece0b53abae8daaa8c 1160 Pfam PF02811 PHP domain 8 170 1.9E-38 T 28-03-2018 IPR004013 PHP domain GO:0003824 AM348_RS09620 30bdb29e968db53fec1d3ceef4f5a6ea 296 Pfam PF03824 High-affinity nickel-transport protein 13 294 3.3E-57 T 28-03-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AM348_RS19265 b992e92e1a93533eab46857073110404 82 Pfam PF04226 Transglycosylase associated protein 33 81 7.4E-17 T 28-03-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AM348_RS21430 10cdc047c8db4620c2b424bb9d77ec7d 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 219 5.6E-23 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21430 10cdc047c8db4620c2b424bb9d77ec7d 229 Gene3D G3DSA:1.10.3720.10 4 227 2.2E-39 T 28-03-2018 AM348_RS21430 10cdc047c8db4620c2b424bb9d77ec7d 229 SUPERFAMILY SSF161098 6 219 1.22E-51 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS21430 10cdc047c8db4620c2b424bb9d77ec7d 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 221 1.2E-72 T 28-03-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 AM348_RS23225 4933d60875ef7cc517eb3c5749f36a49 491 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 6.5E-126 T 28-03-2018 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 GO:0016020 Reactome: R-HSA-425397 AM348_RS23225 4933d60875ef7cc517eb3c5749f36a49 491 SUPERFAMILY SSF103473 10 407 1.96E-41 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS23225 4933d60875ef7cc517eb3c5749f36a49 491 Gene3D G3DSA:1.20.1250.20 1 200 4.1E-23 T 28-03-2018 AM348_RS23225 4933d60875ef7cc517eb3c5749f36a49 491 Gene3D G3DSA:1.20.1250.20 209 414 2.3E-17 T 28-03-2018 AM348_RS23225 4933d60875ef7cc517eb3c5749f36a49 491 Pfam PF07690 Major Facilitator Superfamily 17 366 4.2E-30 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS12215 c22f320ff3ba96897b9a2a48cd0fe93a 420 Pfam PF13343 Bacterial extracellular solute-binding protein 82 308 3.1E-34 T 28-03-2018 AM348_RS12215 c22f320ff3ba96897b9a2a48cd0fe93a 420 Gene3D G3DSA:3.40.190.10 133 297 1.8E-23 T 28-03-2018 AM348_RS12215 c22f320ff3ba96897b9a2a48cd0fe93a 420 SUPERFAMILY SSF53850 30 334 1.23E-41 T 28-03-2018 AM348_RS14805 36845b939f7e2033d6de3329a1f0c0e8 59 Pfam PF13974 YebO-like protein 9 57 6.5E-11 T 28-03-2018 IPR025594 YebO-like protein AM348_RS03680 73830d9a20b2eaa735d26405564f37bb 312 Pfam PF01758 Sodium Bile acid symporter family 37 213 3.8E-41 T 28-03-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 AM348_RS19990 cae9e6e6a75d2959e7a6958c371e81bd 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 1.0E-42 T 28-03-2018 IPR025730 Biofilm regulator BssS AM348_RS19990 cae9e6e6a75d2959e7a6958c371e81bd 84 Pfam PF13991 BssS protein family 11 81 4.8E-32 T 28-03-2018 IPR025730 Biofilm regulator BssS AM348_RS06800 86dcb7e1e06225e54ec4a634eebe305b 281 Gene3D G3DSA:1.10.3720.10 69 278 1.1E-30 T 28-03-2018 AM348_RS06800 86dcb7e1e06225e54ec4a634eebe305b 281 SUPERFAMILY SSF161098 4 277 2.34E-56 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS06800 86dcb7e1e06225e54ec4a634eebe305b 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 276 4.0E-21 T 28-03-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 AM348_RS23465 7043b62457a9aef4b812249201dfcc5f 185 SUPERFAMILY SSF49401 31 184 8.45E-26 T 28-03-2018 IPR008966 Adhesion domain AM348_RS23465 7043b62457a9aef4b812249201dfcc5f 185 Gene3D G3DSA:2.60.40.1090 30 185 3.3E-26 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS23465 7043b62457a9aef4b812249201dfcc5f 185 Pfam PF00419 Fimbrial protein 33 184 1.3E-13 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS21615 7faf689a7557160678c426d2d2a6180d 456 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 72 310 6.2E-20 T 28-03-2018 IPR010839 Acyclic terpene utilisation AM348_RS02340 a66f052e21f80d0da6920b4f9235f4e4 214 Pfam PF14487 Domain of unknown function (DUF4433) 10 214 1.2E-58 T 28-03-2018 IPR029494 Domain of unknown function DUF4433 AM348_RS22730 30525b80430618cf4d092383fb9afbfb 184 Gene3D G3DSA:2.60.40.1090 32 184 1.3E-36 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS22730 30525b80430618cf4d092383fb9afbfb 184 SUPERFAMILY SSF49401 33 184 7.95E-37 T 28-03-2018 IPR008966 Adhesion domain AM348_RS22730 30525b80430618cf4d092383fb9afbfb 184 Pfam PF00419 Fimbrial protein 35 183 7.9E-22 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS22280 3c153163b068c66c30a009cf96e4fc61 248 Gene3D G3DSA:3.40.30.10 104 241 6.0E-18 T 28-03-2018 AM348_RS22280 3c153163b068c66c30a009cf96e4fc61 248 Pfam PF13098 Thioredoxin-like domain 112 242 5.5E-15 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS22280 3c153163b068c66c30a009cf96e4fc61 248 SUPERFAMILY SSF52833 83 242 2.0E-37 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS22280 3c153163b068c66c30a009cf96e4fc61 248 SUPERFAMILY SSF54423 19 78 2.09E-22 T 28-03-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal AM348_RS22280 3c153163b068c66c30a009cf96e4fc61 248 Gene3D G3DSA:3.10.450.70 24 86 3.0E-27 T 28-03-2018 AM348_RS06205 ea7801b46c603bf2328e90b1a7cdea8f 96 Gene3D G3DSA:1.10.260.40 36 95 2.9E-7 T 28-03-2018 AM348_RS06205 ea7801b46c603bf2328e90b1a7cdea8f 96 SUPERFAMILY SSF47413 39 82 2.05E-6 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS19760 1fb2b03a57c9642c59c3fe5aa497ec9d 150 Gene3D G3DSA:3.40.630.30 1 147 1.1E-29 T 28-03-2018 AM348_RS19760 1fb2b03a57c9642c59c3fe5aa497ec9d 150 Pfam PF00583 Acetyltransferase (GNAT) family 44 138 7.0E-17 T 28-03-2018 IPR000182 GNAT domain GO:0008080 AM348_RS19760 1fb2b03a57c9642c59c3fe5aa497ec9d 150 SUPERFAMILY SSF55729 1 142 3.6E-28 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS01630 638d654a135f80748a33d4e3cce3d53d 134 ProDom PD082838 YAAI PERIPLASMIC STY0011 ECS0013 PRECURSOR SIGNAL 21 134 7.0E-54 T 28-03-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI AM348_RS01630 638d654a135f80748a33d4e3cce3d53d 134 Pfam PF10807 Protein of unknown function (DUF2541) 3 132 8.7E-62 T 28-03-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI AM348_RS23250 38d7d71a63c05db9ee341d4a8fc62482 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 284 18.154 T 28-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AM348_RS23250 38d7d71a63c05db9ee341d4a8fc62482 296 Pfam PF01040 UbiA prenyltransferase family 19 265 1.6E-60 T 28-03-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 AM348_RS23250 38d7d71a63c05db9ee341d4a8fc62482 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 282 8.4E-93 T 28-03-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 AM348_RS23250 38d7d71a63c05db9ee341d4a8fc62482 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 28-03-2018 IPR030470 UbiA prenyltransferase conserved site AM348_RS18635 99bb208da1dc36e79cff4edd3dd23bc6 78 SUPERFAMILY SSF58042 24 74 8.37E-23 T 28-03-2018 AM348_RS18635 99bb208da1dc36e79cff4edd3dd23bc6 78 PIRSF PIRSF002855 1 78 8.5E-30 T 28-03-2018 IPR016367 Murein-lipoprotein AM348_RS18635 99bb208da1dc36e79cff4edd3dd23bc6 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 3.3E-24 T 28-03-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 AM348_RS18635 99bb208da1dc36e79cff4edd3dd23bc6 78 Gene3D G3DSA:1.20.5.190 22 73 9.0E-17 T 28-03-2018 AM348_RS03480 c0ec5b49261d4d104a1aa6839618d2bf 93 Pfam PF15940 Family of unknown function 1 90 9.7E-44 T 28-03-2018 IPR016958 Uncharacterised conserved protein UCP030798 AM348_RS03480 c0ec5b49261d4d104a1aa6839618d2bf 93 PIRSF PIRSF030798 1 93 1.4E-52 T 28-03-2018 IPR016958 Uncharacterised conserved protein UCP030798 AM348_RS03480 c0ec5b49261d4d104a1aa6839618d2bf 93 ProDom PD064934 YJCB MEMBRANE INNER ECS5042 21 92 2.0E-30 T 28-03-2018 IPR016958 Uncharacterised conserved protein UCP030798 AM348_RS10785 42d8d89856197c60ecb04005e49df62a 329 Gene3D G3DSA:3.90.550.10 1 248 9.4E-33 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS10785 42d8d89856197c60ecb04005e49df62a 329 SUPERFAMILY SSF53448 2 223 9.93E-38 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS10785 42d8d89856197c60ecb04005e49df62a 329 Pfam PF00535 Glycosyl transferase family 2 8 164 2.8E-14 T 28-03-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 AM348_RS08470 2559bef791add43116695490937c05ef 783 Gene3D G3DSA:1.10.287.100 256 293 9.5E-16 T 28-03-2018 AM348_RS08470 2559bef791add43116695490937c05ef 783 Gene3D G3DSA:1.50.10.10 295 783 7.7E-105 T 28-03-2018 AM348_RS08470 2559bef791add43116695490937c05ef 783 SUPERFAMILY SSF48208 558 779 3.92E-86 T 28-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM348_RS08470 2559bef791add43116695490937c05ef 783 SUPERFAMILY SSF48208 305 530 3.92E-86 T 28-03-2018 IPR008928 Six-hairpin glycosidase-like GO:0003824 AM348_RS08470 2559bef791add43116695490937c05ef 783 Pfam PF01204 Trehalase 414 761 6.3E-11 T 28-03-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 AM348_RS08470 2559bef791add43116695490937c05ef 783 Gene3D G3DSA:2.70.98.50 26 254 1.4E-87 T 28-03-2018 AM348_RS11770 0731409195950868f9a9443626db0e7f 66 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 62 2.6E-34 T 28-03-2018 IPR020910 Uncharacterised protein family UPF0370 AM348_RS11770 0731409195950868f9a9443626db0e7f 66 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 63 27.582 T 28-03-2018 IPR020910 Uncharacterised protein family UPF0370 AM348_RS12435 dfa04ecf6263c62a1176deae16c60542 219 Pfam PF09335 SNARE associated Golgi protein 49 177 1.0E-25 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS12180 964ad171cffc88313012b358f0de2849 412 Gene3D G3DSA:3.90.1150.10 303 398 2.1E-21 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS12180 964ad171cffc88313012b358f0de2849 412 Gene3D G3DSA:3.40.640.10 51 302 6.4E-58 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS12180 964ad171cffc88313012b358f0de2849 412 Pfam PF00155 Aminotransferase class I and II 37 375 5.4E-60 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS12180 964ad171cffc88313012b358f0de2849 412 SUPERFAMILY SSF53383 10 394 2.29E-107 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS22475 8412f25f0640e79d42c171fb16296831 82 ProDom PD027061 YBDJ MEMBRANE TRANSMEMBRANE INNER RAMA 3'REGION ECS0618 1 82 3.0E-15 T 28-03-2018 IPR010590 Protein of unknown function DUF1158 AM348_RS22475 8412f25f0640e79d42c171fb16296831 82 Pfam PF06643 Protein of unknown function (DUF1158) 1 79 5.8E-44 T 28-03-2018 IPR010590 Protein of unknown function DUF1158 AM348_RS16785 bc96d14082469be7d60dacd7f47c8851 70 Pfam PF13619 KTSC domain 7 64 4.9E-19 T 28-03-2018 IPR025309 KTSC domain AM348_RS09120 6415613b2bf3b1b54333cfd7ccb0d6e4 178 Pfam PF05947 Type VI secretion system, TssF 6 160 8.6E-46 T 28-03-2018 IPR010272 Type VI secretion system, TssF-like AM348_RS02315 21273f38940b777e989a39f47f6e6826 217 Pfam PF01844 HNH endonuclease 142 198 8.3E-8 T 28-03-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AM348_RS02315 21273f38940b777e989a39f47f6e6826 217 Gene3D G3DSA:3.40.1800.10 120 209 2.6E-10 T 28-03-2018 AM348_RS15920 81ef20ac093ae52983c62c64484aa38c 303 ProSitePatterns PS01237 Uncharacterized protein family UPF0028 signature. 11 43 - T 28-03-2018 IPR001423 Lysophospholipase patatin, conserved site GO:0004622|GO:0046470 Reactome: R-HSA-6814848 AM348_RS15920 81ef20ac093ae52983c62c64484aa38c 303 Gene3D G3DSA:3.40.1090.10 2 295 1.6E-39 T 28-03-2018 AM348_RS15920 81ef20ac093ae52983c62c64484aa38c 303 SUPERFAMILY SSF52151 1 296 6.02E-57 T 28-03-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 AM348_RS15920 81ef20ac093ae52983c62c64484aa38c 303 Pfam PF01734 Patatin-like phospholipase 8 165 3.4E-22 T 28-03-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 AM348_RS16085 811cf74ecbcdfb01eab88b8f90853c1d 73 SUPERFAMILY SSF47413 6 64 5.32E-14 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS16085 811cf74ecbcdfb01eab88b8f90853c1d 73 Gene3D G3DSA:3.30.240.10 1 72 7.3E-18 T 28-03-2018 AM348_RS16085 811cf74ecbcdfb01eab88b8f90853c1d 73 Pfam PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 6 64 6.9E-23 T 28-03-2018 IPR031856 Putative bacterial antitoxin YdaS AM348_RS04375 952ef0dfd12c33c7610b37a430459e97 166 PIRSF PIRSF034445 1 146 2.4E-30 T 28-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM348_RS04375 952ef0dfd12c33c7610b37a430459e97 166 Pfam PF07813 LTXXQ motif family protein 41 135 1.9E-20 T 28-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM348_RS19455 42a5199ce5ce19452bb14692fcc58904 414 Pfam PF12704 MacB-like periplasmic core domain 27 239 3.3E-15 T 28-03-2018 IPR025857 MacB-like periplasmic core domain AM348_RS19455 42a5199ce5ce19452bb14692fcc58904 414 Pfam PF02687 FtsX-like permease family 302 407 2.4E-12 T 28-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM348_RS19455 42a5199ce5ce19452bb14692fcc58904 414 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 5 414 5.2E-232 T 28-03-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0006810|GO:0009276|GO:0016021 AM348_RS19455 42a5199ce5ce19452bb14692fcc58904 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 413 1.9E-166 T 28-03-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 AM348_RS19455 42a5199ce5ce19452bb14692fcc58904 414 Gene3D G3DSA:1.20.1250.20 1 404 0.018 T 28-03-2018 AM348_RS14270 c033065d48f0efe4a48b3086982a0506 77 SUPERFAMILY SSF54857 1 77 1.44E-24 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS14270 c033065d48f0efe4a48b3086982a0506 77 Pfam PF06183 DinI-like family 14 76 9.0E-26 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS14270 c033065d48f0efe4a48b3086982a0506 77 Gene3D G3DSA:3.30.910.10 1 76 1.3E-29 T 28-03-2018 IPR010391 DNA damage-inducible protein DinI-like AM348_RS03280 b07cb4cf06df919e65c1052513685933 282 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 278 1.2E-148 T 28-03-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03280 b07cb4cf06df919e65c1052513685933 282 PIRSF PIRSF011468 1 282 1.5E-168 T 28-03-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS08580 76e4439c3b16a739e618248230ea265e 194 PIRSF PIRSF018506 3 191 2.7E-101 T 28-03-2018 IPR025541 Propanediol/glycerol dehydratase, medium subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS08580 76e4439c3b16a739e618248230ea265e 194 SUPERFAMILY SSF52968 15 193 2.22E-74 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS08580 76e4439c3b16a739e618248230ea265e 194 Gene3D G3DSA:3.40.50.10150 17 188 1.8E-73 T 28-03-2018 IPR010254 B12-dependent dehydratases, beta subunit AM348_RS08580 76e4439c3b16a739e618248230ea265e 194 Pfam PF02288 Dehydratase medium subunit 36 148 5.0E-37 T 28-03-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor AM348_RS05370 b2c3b3ab42ce61abe872a2a2a74fd2d9 85 Pfam PF01809 Haemolytic domain 10 75 1.1E-30 T 28-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM348_RS05370 b2c3b3ab42ce61abe872a2a2a74fd2d9 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 68 3.0E-21 T 28-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM348_RS05370 b2c3b3ab42ce61abe872a2a2a74fd2d9 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 25.359 T 28-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM348_RS05370 b2c3b3ab42ce61abe872a2a2a74fd2d9 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 77 6.1E-33 T 28-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM348_RS05370 b2c3b3ab42ce61abe872a2a2a74fd2d9 85 SMART SM01234 8 75 2.7E-45 T 28-03-2018 IPR002696 Putative membrane protein insertion efficiency factor AM348_RS19150 92bfd13ba217448b21ea180080ad7100 114 Pfam PF01844 HNH endonuclease 27 75 9.7E-12 T 28-03-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 AM348_RS19150 92bfd13ba217448b21ea180080ad7100 114 SMART SM00507 15 70 1.4E-5 T 28-03-2018 IPR003615 HNH nuclease AM348_RS19150 92bfd13ba217448b21ea180080ad7100 114 Gene3D G3DSA:3.40.1800.10 6 86 1.0E-7 T 28-03-2018 AM348_RS09105 8e5b15869f53bf940211a04827564a7f 168 PIRSF PIRSF028301 1 168 8.8E-56 T 28-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AM348_RS09105 8e5b15869f53bf940211a04827564a7f 168 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 162 5.6E-48 T 28-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AM348_RS09105 8e5b15869f53bf940211a04827564a7f 168 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 11 163 2.5E-50 T 28-03-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 AM348_RS16215 43bf51b0707a7a86a374d0287d269707 298 Pfam PF04233 Phage Mu protein F like protein 159 267 1.3E-7 T 28-03-2018 IPR006528 Phage head morphogenesis domain AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 59 71 5.4E-13 T 28-03-2018 IPR003004 GspF/PilC family AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 377 396 5.4E-13 T 28-03-2018 IPR003004 GspF/PilC family AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 361 375 5.4E-13 T 28-03-2018 IPR003004 GspF/PilC family AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 158 186 5.4E-13 T 28-03-2018 IPR003004 GspF/PilC family AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 Pfam PF00482 Type II secretion system (T2SS), protein F 268 388 7.8E-27 T 28-03-2018 IPR018076 Type II secretion system F domain AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 Pfam PF00482 Type II secretion system (T2SS), protein F 64 186 1.4E-26 T 28-03-2018 IPR018076 Type II secretion system F domain AM348_RS01140 b6c0072cd5489f289b04c42dabf25d3b 400 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 158 186 - T 28-03-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 AM348_RS23480 667acb1ed439f3031c66fbf4ba18d26c 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 4.4E-127 T 28-03-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 AM348_RS23480 667acb1ed439f3031c66fbf4ba18d26c 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 43.093 T 28-03-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 AM348_RS01925 ba3b9965e92d4ba925919409908da55b 163 Pfam PF10696 Protein of unknown function (DUF2501) 83 161 6.5E-26 T 28-03-2018 IPR019637 Protein of unknown function DUF2501 AM348_RS14285 4dfdee80707fb045f0d685bc0f3491e0 119 Gene3D G3DSA:3.30.1330.70 3 119 2.5E-8 T 28-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM348_RS14285 4dfdee80707fb045f0d685bc0f3491e0 119 Pfam PF05866 Endodeoxyribonuclease RusA 7 113 1.1E-11 T 28-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM348_RS14285 4dfdee80707fb045f0d685bc0f3491e0 119 SUPERFAMILY SSF103084 13 114 8.63E-11 T 28-03-2018 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 SUPERFAMILY SSF46785 1 84 1.05E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 SUPERFAMILY SSF53850 87 295 1.47E-30 T 28-03-2018 AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 Gene3D G3DSA:1.10.10.10 1 81 1.7E-19 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 Pfam PF03466 LysR substrate binding domain 86 280 1.4E-31 T 28-03-2018 IPR005119 LysR, substrate-binding AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 Gene3D G3DSA:3.40.190.10 179 261 5.9E-14 T 28-03-2018 AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 Gene3D G3DSA:3.40.190.10 86 178 7.2E-15 T 28-03-2018 AM348_RS21905 0c4d75e63b8250507958c6a481e60317 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.5E-18 T 28-03-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 AM348_RS19050 c78aba9f7b65d4316b07cc8e0d831115 236 Pfam PF09335 SNARE associated Golgi protein 81 198 6.5E-26 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS05340 58f4f81eba1ae93c620d1e355134cd16 188 Gene3D G3DSA:3.40.50.360 1 188 2.9E-36 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS05340 58f4f81eba1ae93c620d1e355134cd16 188 Pfam PF03358 NADPH-dependent FMN reductase 6 148 1.5E-38 T 28-03-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 AM348_RS05340 58f4f81eba1ae93c620d1e355134cd16 188 SUPERFAMILY SSF52218 6 178 5.12E-44 T 28-03-2018 IPR029039 Flavoprotein-like domain AM348_RS03645 cb9a043c1deafbb89d7ab316422d53df 698 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 30 691 1.3E-267 T 28-03-2018 IPR010344 Exopolysaccharide biosynthesis protein YbjH AM348_RS23560 dec65c76b9cd2253244cea864598a5ac 406 SUPERFAMILY SSF90123 299 389 3.27E-6 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS23560 dec65c76b9cd2253244cea864598a5ac 406 Pfam PF05992 SbmA/BacA-like family 80 393 5.8E-165 T 28-03-2018 IPR009248 SbmA/BacA-like GO:0005215|GO:0006810|GO:0016021 AM348_RS23560 dec65c76b9cd2253244cea864598a5ac 406 Gene3D G3DSA:1.20.1560.10 296 392 2.6E-4 T 28-03-2018 AM348_RS23560 dec65c76b9cd2253244cea864598a5ac 406 Gene3D G3DSA:1.20.1560.10 70 284 1.3E-16 T 28-03-2018 AM348_RS23560 dec65c76b9cd2253244cea864598a5ac 406 SUPERFAMILY SSF90123 75 250 3.53E-6 T 28-03-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 AM348_RS15260 345c508cba4a15a930f508872ae4854d 63 Pfam PF07358 Protein of unknown function (DUF1482) 1 57 8.9E-31 T 28-03-2018 IPR009954 Protein of unknown function DUF1482 AM348_RS09065 7c8e0e3f6cfe73303318061476a33b9d 67 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 5 35 4.1E-11 T 28-03-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 AM348_RS08430 e1171cd22b945c9ef95373b81dbede27 495 Pfam PF08666 SAF domain 10 81 3.7E-13 T 28-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM348_RS08430 e1171cd22b945c9ef95373b81dbede27 495 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 108 494 3.0E-155 T 28-03-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 AM348_RS08430 e1171cd22b945c9ef95373b81dbede27 495 SMART SM00858 10 81 7.9E-17 T 28-03-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 AM348_RS04215 3904ed6e59a5a5ab1305db3a80357129 125 Gene3D G3DSA:1.20.1290.10 7 125 2.1E-37 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS04215 3904ed6e59a5a5ab1305db3a80357129 125 Pfam PF02627 Carboxymuconolactone decarboxylase family 33 118 1.1E-22 T 28-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS04215 3904ed6e59a5a5ab1305db3a80357129 125 SUPERFAMILY SSF69118 4 122 1.31E-34 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS22605 f7f62f93ebb3623b0a394f22aa0d10f3 460 Gene3D G3DSA:1.20.1600.10 18 460 4.3E-93 T 28-03-2018 AM348_RS22605 f7f62f93ebb3623b0a394f22aa0d10f3 460 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 457 1.6E-110 T 28-03-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 AM348_RS22605 f7f62f93ebb3623b0a394f22aa0d10f3 460 Pfam PF02321 Outer membrane efflux protein 66 247 6.1E-21 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS22605 f7f62f93ebb3623b0a394f22aa0d10f3 460 Pfam PF02321 Outer membrane efflux protein 274 455 3.6E-27 T 28-03-2018 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 AM348_RS22605 f7f62f93ebb3623b0a394f22aa0d10f3 460 SUPERFAMILY SSF56954 2 459 4.71E-103 T 28-03-2018 AM348_RS21965 1b05a5c74994002413b6d28ed4b94fcf 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 2.1E-64 T 28-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AM348_RS21965 1b05a5c74994002413b6d28ed4b94fcf 250 SUPERFAMILY SSF56784 1 247 4.14E-64 T 28-03-2018 IPR023214 HAD-like domain AM348_RS21965 1b05a5c74994002413b6d28ed4b94fcf 250 Pfam PF13242 HAD-hyrolase-like 174 246 1.4E-19 T 28-03-2018 AM348_RS21965 1b05a5c74994002413b6d28ed4b94fcf 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 4.1E-22 T 28-03-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA AM348_RS21965 1b05a5c74994002413b6d28ed4b94fcf 250 Gene3D G3DSA:3.40.50.1000 1 249 1.9E-28 T 28-03-2018 IPR023214 HAD-like domain AM348_RS18185 ee22f4ff8fdfd72d73f1e762d03ef176 155 Pfam PF05433 Glycine zipper 2TM domain 62 102 2.4E-7 T 28-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM348_RS19090 0823ab94f03fb6265221dae643003c4d 91 Pfam PF07383 Protein of unknown function (DUF1496) 35 90 1.0E-24 T 28-03-2018 IPR009971 Protein of unknown function DUF1496 AM348_RS08175 7ae4247fb15a8f3d9f96cecd73840699 331 Pfam PF01136 Peptidase family U32 76 330 1.9E-66 T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS08175 7ae4247fb15a8f3d9f96cecd73840699 331 SUPERFAMILY SSF51391 11 162 9.15E-6 T 28-03-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 AM348_RS08175 7ae4247fb15a8f3d9f96cecd73840699 331 Gene3D G3DSA:3.20.20.150 9 329 1.8E-18 T 28-03-2018 AM348_RS08175 7ae4247fb15a8f3d9f96cecd73840699 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS04815 0671305737506fe8a046a5f012ecaf58 476 Pfam PF02646 RmuC family 137 433 7.1E-108 T 28-03-2018 IPR003798 DNA recombination RmuC AM348_RS04815 0671305737506fe8a046a5f012ecaf58 476 Gene3D G3DSA:1.10.287.1060 323 420 0.13 T 28-03-2018 AM348_RS04815 0671305737506fe8a046a5f012ecaf58 476 Gene3D G3DSA:1.20.5.340 148 299 1.1E-24 T 28-03-2018 AM348_RS18700 511ab8c0601699aef6f32b4dcfcce688 369 Pfam PF01594 AI-2E family transporter 15 344 1.3E-59 T 28-03-2018 IPR002549 Transmembrane protein TqsA-like AM348_RS10475 74911c003892b58495ce6f6d7a3c0ec9 323 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 230 322 6.0E-43 T 28-03-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS10475 74911c003892b58495ce6f6d7a3c0ec9 323 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 3 323 6.7E-188 T 28-03-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS10475 74911c003892b58495ce6f6d7a3c0ec9 323 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 4 175 6.2E-70 T 28-03-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198|KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 PRINTS PR01249 Ribosomal protein L31 signature 59 77 5.1E-15 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.1E-15 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 PRINTS PR01249 Ribosomal protein L31 signature 44 59 5.1E-15 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 Pfam PF01197 Ribosomal protein L31 1 78 2.4E-24 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 2.2E-18 T 28-03-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 SUPERFAMILY SSF143800 1 80 3.92E-22 T 28-03-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 AM348_RS23065 e3c600eeefe34c6dfc80211b3f6c8171 86 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 26.033 T 28-03-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 SUPERFAMILY SSF81799 114 213 5.75E-35 T 28-03-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 311 38.932 T 28-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 SUPERFAMILY SSF53335 7 113 7.74E-46 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 SUPERFAMILY SSF53335 213 310 7.74E-46 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 PIRSF PIRSF004486 1 312 7.0E-102 T 28-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 Pfam PF01795 MraW methylase family 5 310 4.5E-121 T 28-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 1 310 5.4E-132 T 28-03-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 Gene3D G3DSA:3.40.50.150 7 171 4.3E-17 T 28-03-2018 AM348_RS01250 1356fabb87df2be6a60aabb022ea0e15 313 Gene3D G3DSA:3.40.50.150 172 313 4.1E-19 T 28-03-2018 AM348_RS07040 231193c783933e3d625da481e4a19e2d 711 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 23 697 0.0 T 28-03-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 AM348_RS07040 231193c783933e3d625da481e4a19e2d 711 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 703 0.0 T 28-03-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 AM348_RS02225 c426c4d348fbfc4ee554494e25072260 64 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 4 54 2.9E-19 T 28-03-2018 IPR010260 DNA-binding transcriptional activator AlpA AM348_RS02225 c426c4d348fbfc4ee554494e25072260 64 Gene3D G3DSA:1.10.10.10 7 63 3.8E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS23550 544391ad1fea9bcf3b8c135f0ee2b7dc 107 ProDom PD068630 MEMBRANE INNER YAIY TRANSMEMBRANE 1 104 3.0E-44 T 28-03-2018 IPR020513 Uncharacterised protein family, inner membrane YaiY GO:0016021 AM348_RS23550 544391ad1fea9bcf3b8c135f0ee2b7dc 107 Pfam PF10954 Protein of unknown function (DUF2755) 1 103 1.0E-45 T 28-03-2018 IPR020513 Uncharacterised protein family, inner membrane YaiY GO:0016021 AM348_RS23220 7c93d9456bf90ac98889ed3e0dd76f81 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 2.1E-52 T 28-03-2018 IPR005619 Uncharacterised protein family, YajG AM348_RS23220 7c93d9456bf90ac98889ed3e0dd76f81 192 Pfam PF08139 Prokaryotic membrane lipoprotein lipid attachment site 1 19 1.2E-6 T 28-03-2018 IPR012640 Membrane lipoprotein, lipid attachment site AM348_RS20345 95c61096ff04afd92c0e5b707d7f26d1 117 Pfam PF06412 Conjugal transfer protein TraD 50 109 2.0E-13 T 28-03-2018 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 AM348_RS20285 452c9d8668d01de5bb4a5b1d8f8ac7bb 351 Pfam PF01497 Periplasmic binding protein 57 314 5.5E-37 T 28-03-2018 IPR002491 ABC transporter periplasmic binding domain GO:0005488 AM348_RS20285 452c9d8668d01de5bb4a5b1d8f8ac7bb 351 Gene3D G3DSA:3.40.50.1980 174 342 1.7E-27 T 28-03-2018 AM348_RS20285 452c9d8668d01de5bb4a5b1d8f8ac7bb 351 SUPERFAMILY SSF53807 54 339 1.88E-40 T 28-03-2018 AM348_RS20285 452c9d8668d01de5bb4a5b1d8f8ac7bb 351 Gene3D G3DSA:3.40.50.1980 36 173 3.0E-27 T 28-03-2018 AM348_RS15435 e501baf2ff35e78ca29e613c94b36caa 194 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 8 190 2.1E-83 T 28-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM348_RS15435 e501baf2ff35e78ca29e613c94b36caa 194 PIRSF PIRSF004982 5 190 3.2E-55 T 28-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM348_RS15435 e501baf2ff35e78ca29e613c94b36caa 194 Pfam PF03843 Outer membrane lipoprotein Slp family 20 166 3.8E-47 T 28-03-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 357 97.125 T 28-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 28-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 354 1.1E-40 T 28-03-2018 IPR003395 RecF/RecN/SMC, N-terminal AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 SUPERFAMILY SSF52540 1 342 2.62E-39 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 9.0E-139 T 28-03-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 Gene3D G3DSA:3.40.50.300 1 357 7.2E-32 T 28-03-2018 AM348_RS05400 1696b9dc1de54c8e836b1a7daa1d37b3 357 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 28-03-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 AM348_RS15765 14de2e2ce6488be3dc85bd31c489ce40 130 Pfam PF04247 Invasion gene expression up-regulator, SirB 6 127 2.3E-36 T 28-03-2018 IPR007360 Invasion gene expression up-regulator, SirB AM348_RS15765 14de2e2ce6488be3dc85bd31c489ce40 130 PIRSF PIRSF005610 1 125 5.1E-20 T 28-03-2018 IPR007360 Invasion gene expression up-regulator, SirB AM348_RS10315 227aa293683f1c4f21076d35eafce528 114 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 1 97 2.0E-47 T 28-03-2018 IPR020483 Uncharacterised protein family YgbA AM348_RS10315 227aa293683f1c4f21076d35eafce528 114 Pfam PF11756 Nitrous oxide-stimulated promoter 4 106 5.5E-39 T 28-03-2018 IPR020483 Uncharacterised protein family YgbA AM348_RS17550 29aa26244046c9a5097310f7181e40ed 395 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 13 373 1.3E-50 T 28-03-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM348_RS17550 29aa26244046c9a5097310f7181e40ed 395 SUPERFAMILY SSF56935 21 395 3.94E-59 T 28-03-2018 AM348_RS17550 29aa26244046c9a5097310f7181e40ed 395 Gene3D G3DSA:2.40.160.60 19 395 7.6E-65 T 28-03-2018 AM348_RS08940 6c54af414135cdb863bf34b47d4cf130 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 134 1.7E-30 T 28-03-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 AM348_RS08940 6c54af414135cdb863bf34b47d4cf130 141 TIGRFAM TIGR02801 tolR: protein TolR 15 134 4.4E-38 T 28-03-2018 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 AM348_RS08940 6c54af414135cdb863bf34b47d4cf130 141 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 15 136 2.3E-68 T 28-03-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 AM348_RS13765 204cf7fe9b3537329a5fa485b1b361b7 492 Pfam PF13440 Polysaccharide biosynthesis protein 31 325 1.2E-65 T 28-03-2018 AM348_RS09645 31e1c9212850691d509ddea5709481b7 151 Pfam PF05232 Chlorhexidine efflux transporter 77 140 8.1E-22 T 28-03-2018 IPR007896 Chlorhexidine efflux transporter AM348_RS09645 31e1c9212850691d509ddea5709481b7 151 Pfam PF05232 Chlorhexidine efflux transporter 9 71 6.8E-24 T 28-03-2018 IPR007896 Chlorhexidine efflux transporter AM348_RS00990 2dfabe082f019510112ad55612af7c1b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 2.0E-7 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS00990 2dfabe082f019510112ad55612af7c1b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 2.0E-7 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS00990 2dfabe082f019510112ad55612af7c1b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 139 163 2.0E-7 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS00990 2dfabe082f019510112ad55612af7c1b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 2.0E-7 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS00990 2dfabe082f019510112ad55612af7c1b 256 PIRSF PIRSF006648 11 253 7.3E-23 T 28-03-2018 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 AM348_RS00990 2dfabe082f019510112ad55612af7c1b 256 Pfam PF01061 ABC-2 type transporter 9 218 1.6E-38 T 28-03-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 AM348_RS00560 50d091e471fced9fb9908fd40bf44b95 256 SMART SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. 11 255 0.0072 T 28-03-2018 IPR020803 Polyketide synthase, methyltransferase domain AM348_RS00560 50d091e471fced9fb9908fd40bf44b95 256 Pfam PF08241 Methyltransferase domain 49 145 7.8E-27 T 28-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM348_RS00560 50d091e471fced9fb9908fd40bf44b95 256 SUPERFAMILY SSF53335 11 243 8.75E-47 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS00560 50d091e471fced9fb9908fd40bf44b95 256 Gene3D G3DSA:3.40.50.150 29 255 1.1E-43 T 28-03-2018 AM348_RS17160 cc8f9ce165a90b49ca06eedc3a3d7e8c 720 Pfam PF10139 Putative bacterial virulence factor 556 717 2.0E-22 T 28-03-2018 IPR017030 Virulence effector, SrfC AM348_RS17160 cc8f9ce165a90b49ca06eedc3a3d7e8c 720 Pfam PF10139 Putative bacterial virulence factor 11 418 9.3E-64 T 28-03-2018 IPR017030 Virulence effector, SrfC AM348_RS17160 cc8f9ce165a90b49ca06eedc3a3d7e8c 720 PIRSF PIRSF034586 411 720 7.6E-78 T 28-03-2018 IPR017030 Virulence effector, SrfC AM348_RS17160 cc8f9ce165a90b49ca06eedc3a3d7e8c 720 PIRSF PIRSF034586 1 415 1.1E-138 T 28-03-2018 IPR017030 Virulence effector, SrfC AM348_RS03345 165a34c2c843ff2b6e799a7827045a7f 331 Gene3D G3DSA:1.10.3470.10 2 324 6.0E-26 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS03345 165a34c2c843ff2b6e799a7827045a7f 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 318 8.8E-45 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS05710 c9e447a11675afd254d2fc8e00a0e251 297 Pfam PF14491 Protein of unknown function (DUF4435) 24 253 1.4E-10 T 28-03-2018 IPR029492 Domain of unknown function DUF4435 AM348_RS20035 a8b4eec2d4f41dc3dbefb8cd941c45e3 125 Pfam PF13984 MsyB protein 3 125 1.1E-63 T 28-03-2018 IPR025729 MsyB protein AM348_RS17525 a42744f290a233a1ac37ef304ce77916 455 Pfam PF02638 Glycosyl hydrolase-like 10 72 405 4.0E-118 T 28-03-2018 IPR003790 Glycosyl hydrolase-like 10 AM348_RS17525 a42744f290a233a1ac37ef304ce77916 455 Gene3D G3DSA:3.20.20.80 90 402 5.5E-45 T 28-03-2018 AM348_RS17525 a42744f290a233a1ac37ef304ce77916 455 SUPERFAMILY SSF51445 99 387 2.34E-32 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS09550 0e72b418ce5bd7d2f09853c0b0af6d7e 820 Gene3D G3DSA:1.25.40.10 266 532 3.8E-12 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS09550 0e72b418ce5bd7d2f09853c0b0af6d7e 820 SUPERFAMILY SSF48452 105 203 6.7E-9 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS09550 0e72b418ce5bd7d2f09853c0b0af6d7e 820 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 17 820 1.9E-261 T 28-03-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:0022891|GO:0042710 AM348_RS09550 0e72b418ce5bd7d2f09853c0b0af6d7e 820 Gene3D G3DSA:1.25.40.10 65 217 8.0E-10 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS09550 0e72b418ce5bd7d2f09853c0b0af6d7e 820 SUPERFAMILY SSF48452 373 514 1.47E-6 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS05470 b2b2b7ebcb236ec271907381b1751d93 170 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 3 170 1.0E-52 T 28-03-2018 AM348_RS05510 7ff5b22a825b71f1730ba6ecc9022151 32 Pfam PF08049 IlvB leader peptide 1 32 3.6E-15 T 28-03-2018 IPR012566 IlvB leader peptide AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 SUPERFAMILY SSF53790 12 232 8.37E-83 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 Gene3D G3DSA:3.30.950.10 122 237 6.8E-41 T 28-03-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 Gene3D G3DSA:3.40.1010.10 11 121 2.2E-44 T 28-03-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.096 T 28-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 213 1.0E-28 T 28-03-2018 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 PIRSF PIRSF005917 1 287 1.4E-106 T 28-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 283 6.7E-114 T 28-03-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS08225 ef3c5a2014ea7a226a6201ed45c613b6 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 28-03-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 AM348_RS05910 4ee72d88444f1385c21e9f71ea2fdeaf 345 Gene3D G3DSA:3.40.50.2000 1 157 1.2E-25 T 28-03-2018 AM348_RS05910 4ee72d88444f1385c21e9f71ea2fdeaf 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 164 312 8.9E-16 T 28-03-2018 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 AM348_RS05910 4ee72d88444f1385c21e9f71ea2fdeaf 345 Gene3D G3DSA:3.40.50.2000 168 339 5.9E-27 T 28-03-2018 AM348_RS05910 4ee72d88444f1385c21e9f71ea2fdeaf 345 SUPERFAMILY SSF53756 1 332 1.33E-51 T 28-03-2018 AM348_RS02825 5457b70b7da49ae209e31ea7b97464cf 109 Gene3D G3DSA:3.30.1660.10 42 108 1.6E-15 T 28-03-2018 IPR025543 Dodecin-like AM348_RS02825 5457b70b7da49ae209e31ea7b97464cf 109 Pfam PF07338 Protein of unknown function (DUF1471) 53 108 6.8E-14 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS02825 5457b70b7da49ae209e31ea7b97464cf 109 SUPERFAMILY SSF159871 10 108 4.71E-18 T 28-03-2018 IPR010854 Domain of unknown function DUF1471 AM348_RS08935 4f6b93ee409c940d61d2cbac0c9943b8 244 Pfam PF01618 MotA/TolQ/ExbB proton channel family 87 205 8.2E-35 T 28-03-2018 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 AM348_RS08935 4f6b93ee409c940d61d2cbac0c9943b8 244 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 11 222 2.2E-102 T 28-03-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 AM348_RS18005 3efe2261c55b7ab5e0bff396a3e17c36 342 Pfam PF03824 High-affinity nickel-transport protein 43 329 1.5E-86 T 28-03-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 AM348_RS18005 3efe2261c55b7ab5e0bff396a3e17c36 342 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 47 324 6.3E-117 T 28-03-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 AM348_RS01905 2ee43f8ac2d4b19b89bcc7b491a0689b 258 Pfam PF06738 Putative threonine/serine exporter 13 252 9.4E-70 T 28-03-2018 IPR010619 Putative threonine/serine exporter AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 2.0E-223 T 28-03-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 Gene3D G3DSA:3.90.1150.10 20 99 3.4E-17 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 Gene3D G3DSA:3.90.1150.10 278 397 8.3E-42 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 28-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.935 T 28-03-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 SUPERFAMILY SSF53383 4 396 8.7E-126 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 Pfam PF00155 Aminotransferase class I and II 43 387 2.9E-78 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS05935 94b0e87219a01fe31b41357bca5c0799 398 Gene3D G3DSA:3.40.640.10 100 277 2.2E-29 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS13980 66568aac8cec65417fe45c0216470fd0 116 SUPERFAMILY SSF143414 44 109 1.57E-14 T 28-03-2018 AM348_RS13980 66568aac8cec65417fe45c0216470fd0 116 Pfam PF00936 BMC domain 45 110 7.3E-13 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS13980 66568aac8cec65417fe45c0216470fd0 116 SMART SM00877 44 116 3.7E-18 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS13980 66568aac8cec65417fe45c0216470fd0 116 PIRSF PIRSF012296 1 116 5.1E-58 T 28-03-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 AM348_RS02040 eda7c1a9b269d4cac7217955cb032bf0 426 Pfam PF04286 Protein of unknown function (DUF445) 44 417 1.3E-106 T 28-03-2018 IPR007383 Protein of unknown function DUF445 AM348_RS12625 26e88bb20aa45666ba298fd045b8a027 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.378 T 28-03-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 AM348_RS12625 26e88bb20aa45666ba298fd045b8a027 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 8.1E-21 T 28-03-2018 AM348_RS06170 f1f78b11636e6439ebf9a1aa9283be15 121 Pfam PF05360 yiaA/B two helix domain 9 54 1.2E-9 T 28-03-2018 IPR008024 YiaAB two helix AM348_RS17515 0f121ebfeadc6ba4455aaad6249d26c0 423 Pfam PF07804 HipA-like C-terminal domain 166 386 6.7E-40 T 28-03-2018 IPR012893 HipA-like, C-terminal AM348_RS17515 0f121ebfeadc6ba4455aaad6249d26c0 423 Pfam PF13657 HipA N-terminal domain 16 121 4.9E-12 T 28-03-2018 IPR017508 HipA, N-terminal subdomain 1 AM348_RS05490 8b0acf37919ca00916b41aac649d0d3c 360 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 61 266 1.4E-11 T 28-03-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 AM348_RS05490 8b0acf37919ca00916b41aac649d0d3c 360 Gene3D G3DSA:3.20.20.80 56 310 1.8E-20 T 28-03-2018 AM348_RS05490 8b0acf37919ca00916b41aac649d0d3c 360 SUPERFAMILY SSF51445 40 318 8.66E-33 T 28-03-2018 IPR017853 Glycoside hydrolase superfamily AM348_RS17530 1c1da790d7dd0b345ce6f100c4672934 95 Gene3D G3DSA:1.10.720.30 14 70 1.6E-30 T 28-03-2018 IPR003034 SAP domain AM348_RS17530 1c1da790d7dd0b345ce6f100c4672934 95 Pfam PF09905 DNA-binding protein VF530 7 68 7.5E-33 T 28-03-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 AM348_RS11550 4dc79c7c1b7b40c86ddc4c533e643e9d 258 Pfam PF07179 SseB protein N-terminal domain 8 119 2.6E-27 T 28-03-2018 IPR009839 SseB protein N-terminal domain AM348_RS11550 4dc79c7c1b7b40c86ddc4c533e643e9d 258 Pfam PF14581 SseB protein C-terminal domain 137 243 2.2E-30 T 28-03-2018 IPR027945 SseB protein, C-terminal AM348_RS04470 b14a083c286267682be7f9da1fe4d3d5 219 Pfam PF03591 AzlC protein 19 154 4.9E-30 T 28-03-2018 IPR011606 Branched-chain amino acid transport, permease AM348_RS18130 be65ff00e33aebb60fcdad263c5a7188 206 SMART SM00900 99 191 1.6E-35 T 28-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 AM348_RS18130 be65ff00e33aebb60fcdad263c5a7188 206 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 2 193 26.887 T 28-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 AM348_RS18130 be65ff00e33aebb60fcdad263c5a7188 206 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 192 9.8E-68 T 28-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 AM348_RS18130 be65ff00e33aebb60fcdad263c5a7188 206 PIRSF PIRSF006091 1 203 3.0E-71 T 28-03-2018 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 AM348_RS18130 be65ff00e33aebb60fcdad263c5a7188 206 Pfam PF04205 FMN-binding domain 99 187 9.9E-20 T 28-03-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 AM348_RS10165 fd18789aa4d95515593c1798daddf9a3 78 Gene3D G3DSA:2.20.25.10 2 41 4.3E-4 T 28-03-2018 AM348_RS03655 1834cf2d3d7557dbf62cd584750b4645 212 SUPERFAMILY SSF159270 20 209 3.27E-55 T 28-03-2018 IPR023373 YmcC-like domain AM348_RS03655 1834cf2d3d7557dbf62cd584750b4645 212 Pfam PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF 13 206 3.7E-61 T 28-03-2018 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB AM348_RS03655 1834cf2d3d7557dbf62cd584750b4645 212 Gene3D G3DSA:2.40.360.10 17 212 4.8E-59 T 28-03-2018 IPR023373 YmcC-like domain AM348_RS16695 d90337df7ae3dc7fad11ffb82f540f44 209 SUPERFAMILY SSF69118 4 207 1.34E-41 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS16695 d90337df7ae3dc7fad11ffb82f540f44 209 Pfam PF02627 Carboxymuconolactone decarboxylase family 126 205 1.0E-8 T 28-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS16695 d90337df7ae3dc7fad11ffb82f540f44 209 Pfam PF02627 Carboxymuconolactone decarboxylase family 5 65 1.7E-7 T 28-03-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 AM348_RS16695 d90337df7ae3dc7fad11ffb82f540f44 209 Gene3D G3DSA:1.20.1290.10 2 209 9.7E-38 T 28-03-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 AM348_RS17625 57deeb8feb84b49929aeca6346755ea7 371 Pfam PF13265 Protein of unknown function (DUF4056) 36 297 2.5E-126 T 28-03-2018 IPR025130 Protein of unknown function DUF4056 AM348_RS05570 5cdb8a87bdacf3545ec309bb06bc9aef 150 Pfam PF06711 Protein of unknown function (DUF1198) 1 143 2.4E-66 T 28-03-2018 IPR009587 Protein of unknown function DUF1198 AM348_RS05570 5cdb8a87bdacf3545ec309bb06bc9aef 150 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 145 1.0E-63 T 28-03-2018 IPR009587 Protein of unknown function DUF1198 AM348_RS02905 7de3403ea670c507dfb0149caeb43667 153 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 9.8E-43 T 28-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AM348_RS02905 7de3403ea670c507dfb0149caeb43667 153 Gene3D G3DSA:3.40.50.300 1 153 7.8E-52 T 28-03-2018 AM348_RS02905 7de3403ea670c507dfb0149caeb43667 153 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 2.5E-59 T 28-03-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 AM348_RS02905 7de3403ea670c507dfb0149caeb43667 153 SUPERFAMILY SSF52540 29 127 6.75E-24 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS07265 5700bc0942a785665c956333dae3f59c 72 Gene3D G3DSA:1.20.5.300 4 50 2.9E-16 T 28-03-2018 AM348_RS07265 5700bc0942a785665c956333dae3f59c 72 Pfam PF04102 SlyX 6 72 1.7E-23 T 28-03-2018 IPR007236 SlyX AM348_RS07265 5700bc0942a785665c956333dae3f59c 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 16.989 T 28-03-2018 IPR007236 SlyX AM348_RS01970 bf05e9f33b26c5d3af883556d8fb4d5c 64 Pfam PF04328 Selenoprotein, putative 5 64 2.3E-26 T 28-03-2018 IPR007423 Selenoprotein, putative AM348_RS03760 5afd61a23384a2d2d505ffe44c2afdd7 97 Pfam PF07362 Post-segregation antitoxin CcdA 27 97 5.2E-24 T 28-03-2018 IPR009956 Post-segregation antitoxin CcdA AM348_RS15800 4d3f3402b5777252cf8fcaca141c0943 76 SUPERFAMILY SSF140376 2 75 1.57E-28 T 28-03-2018 AM348_RS15800 4d3f3402b5777252cf8fcaca141c0943 76 Pfam PF06150 ChaB 9 75 2.9E-27 T 28-03-2018 IPR009317 ChaB AM348_RS12975 0d15198a22d145d39611bd92216a8a90 75 PIRSF PIRSF006188 1 72 8.1E-39 T 28-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM348_RS12975 0d15198a22d145d39611bd92216a8a90 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 24.46 T 28-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM348_RS12975 0d15198a22d145d39611bd92216a8a90 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 1.0E-31 T 28-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM348_RS12975 0d15198a22d145d39611bd92216a8a90 75 Gene3D G3DSA:1.10.3390.10 2 71 4.0E-36 T 28-03-2018 IPR023202 YejL-like domain AM348_RS12975 0d15198a22d145d39611bd92216a8a90 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 1.3E-24 T 28-03-2018 IPR009857 Uncharacterised protein family UPF0352 AM348_RS12975 0d15198a22d145d39611bd92216a8a90 75 SUPERFAMILY SSF158651 1 74 1.7E-32 T 28-03-2018 IPR023202 YejL-like domain AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 14 355 7.6E-125 T 28-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 Gene3D G3DSA:3.40.640.10 73 270 9.8E-40 T 28-03-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 Pfam PF00155 Aminotransferase class I and II 48 354 2.2E-66 T 28-03-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 SUPERFAMILY SSF53383 9 355 3.23E-79 T 28-03-2018 IPR015424 Pyridoxal phosphate-dependent transferase AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 214 223 - T 28-03-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 Gene3D G3DSA:3.90.1150.10 271 357 1.9E-14 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 12 358 53.708 T 28-03-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 AM348_RS13885 de5c8e6a9225522aa03d03bf1c813f71 359 Gene3D G3DSA:3.90.1150.10 8 72 1.4E-4 T 28-03-2018 IPR015422 Pyridoxal phosphate-dependent transferase, subdomain 2 GO:0003824 AM348_RS17570 09720b4bab3bce3d0f47ddc139c45d49 88 Gene3D G3DSA:1.20.5.780 3 82 2.3E-24 T 28-03-2018 AM348_RS17570 09720b4bab3bce3d0f47ddc139c45d49 88 Pfam PF08681 Protein of unknown function (DUF1778) 6 82 3.3E-25 T 28-03-2018 IPR014795 Vibrio phage ICP1, Orf50 AM348_RS17570 09720b4bab3bce3d0f47ddc139c45d49 88 SUPERFAMILY SSF47598 4 80 4.45E-20 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS22110 6fe1013be3aa8ccf3ffac3c47c665925 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 155 2.7E-87 T 28-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS22110 6fe1013be3aa8ccf3ffac3c47c665925 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 27.07 T 28-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS22110 6fe1013be3aa8ccf3ffac3c47c665925 155 Gene3D G3DSA:3.40.1280.10 2 154 8.1E-49 T 28-03-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal AM348_RS22110 6fe1013be3aa8ccf3ffac3c47c665925 155 Pfam PF02590 Predicted SPOUT methyltransferase 2 153 5.2E-46 T 28-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS22110 6fe1013be3aa8ccf3ffac3c47c665925 155 PIRSF PIRSF004505 1 154 1.0E-39 T 28-03-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 AM348_RS22110 6fe1013be3aa8ccf3ffac3c47c665925 155 SUPERFAMILY SSF75217 2 153 3.3E-50 T 28-03-2018 IPR029028 Alpha/beta knot methyltransferases AM348_RS11480 07e26094f8598a399dbc27f55cf7e383 212 Pfam PF06226 Protein of unknown function (DUF1007) 9 211 2.6E-63 T 28-03-2018 IPR010412 Protein of unknown function DUF1007 AM348_RS11480 07e26094f8598a399dbc27f55cf7e383 212 PIRSF PIRSF008159 1 212 2.0E-71 T 28-03-2018 IPR016537 Uncharacterised conserved protein UCP008159, AM348_RS04790 05fb9cff84585d0eeabccf634a00eeaa 182 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 143 19.085 T 28-03-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AM348_RS04790 05fb9cff84585d0eeabccf634a00eeaa 182 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 4.8E-32 T 28-03-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 AM348_RS04790 05fb9cff84585d0eeabccf634a00eeaa 182 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.8E-33 T 28-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AM348_RS04790 05fb9cff84585d0eeabccf634a00eeaa 182 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.8E-33 T 28-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AM348_RS04790 05fb9cff84585d0eeabccf634a00eeaa 182 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.8E-33 T 28-03-2018 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 AM348_RS21170 79796058554d346c20b73b5465597ef7 248 SMART SM00062 26 246 1.9E-73 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS21170 79796058554d346c20b73b5465597ef7 248 Gene3D G3DSA:3.40.190.10 147 248 3.5E-18 T 28-03-2018 AM348_RS21170 79796058554d346c20b73b5465597ef7 248 Gene3D G3DSA:3.40.190.10 13 146 8.7E-39 T 28-03-2018 AM348_RS21170 79796058554d346c20b73b5465597ef7 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 244 1.2E-70 T 28-03-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF AM348_RS21170 79796058554d346c20b73b5465597ef7 248 SUPERFAMILY SSF53850 7 245 1.09E-74 T 28-03-2018 AM348_RS21170 79796058554d346c20b73b5465597ef7 248 SMART SM00079 26 245 8.7E-8 T 28-03-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 AM348_RS21170 79796058554d346c20b73b5465597ef7 248 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 28-03-2018 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 AM348_RS18910 606fa61b7589ab10ca992cf730c05257 178 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 178 5.0E-78 T 28-03-2018 AM348_RS18910 606fa61b7589ab10ca992cf730c05257 178 Pfam PF14002 YniB-like protein 15 177 2.6E-79 T 28-03-2018 IPR025229 YniB-like protein AM348_RS13370 4ba44fe97da4ed614ffc14f7255815a4 156 Pfam PF07308 Protein of unknown function (DUF1456) 4 70 8.5E-23 T 28-03-2018 IPR009921 Domain of unknown function DUF1456 AM348_RS13370 4ba44fe97da4ed614ffc14f7255815a4 156 Pfam PF07308 Protein of unknown function (DUF1456) 86 148 1.4E-20 T 28-03-2018 IPR009921 Domain of unknown function DUF1456 AM348_RS13200 6a34ed9d36b562f71ebfdc2cdadf28a8 385 Pfam PF04235 Protein of unknown function (DUF418) 215 374 2.1E-45 T 28-03-2018 IPR007349 Domain of unknown function DUF418 AM348_RS06375 e55c576b1cd67f080673d8aac2e5242c 686 Pfam PF05170 AsmA family 1 582 4.5E-165 T 28-03-2018 IPR007844 AsmA AM348_RS20455 e418c0ece86478b41c89b1227d1160f7 70 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 9 58 2.8E-20 T 28-03-2018 IPR010260 DNA-binding transcriptional activator AlpA AM348_RS20455 e418c0ece86478b41c89b1227d1160f7 70 Gene3D G3DSA:1.10.10.10 11 69 1.7E-5 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS08390 60b0df217ce68c99f53f64d2c0c62fc4 131 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 19 127 4.3E-23 T 28-03-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III AM348_RS20085 8be9f0e75f34d22aac5d6da7fd206db7 151 Pfam PF07012 Curlin associated repeat 100 130 9.8E-9 T 28-03-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AM348_RS20085 8be9f0e75f34d22aac5d6da7fd206db7 151 Pfam PF07012 Curlin associated repeat 78 106 5.0E-9 T 28-03-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 AM348_RS00285 6e6bcf4114d761c7a1991c1082e21e31 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 5.7E-178 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS00285 6e6bcf4114d761c7a1991c1082e21e31 378 PIRSF PIRSF000267 2 377 6.5E-119 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS00285 6e6bcf4114d761c7a1991c1082e21e31 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 361 4.8E-101 T 28-03-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 AM348_RS19380 04cd621b6f43270ce054f5b2edda8893 153 PRINTS PR00502 NUDIX hydrolase family signature 31 45 9.0E-6 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS19380 04cd621b6f43270ce054f5b2edda8893 153 PRINTS PR00502 NUDIX hydrolase family signature 45 60 9.0E-6 T 28-03-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 AM348_RS19380 04cd621b6f43270ce054f5b2edda8893 153 SUPERFAMILY SSF55811 4 150 2.17E-28 T 28-03-2018 IPR015797 NUDIX hydrolase domain-like GO:0016787 AM348_RS19380 04cd621b6f43270ce054f5b2edda8893 153 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 28-03-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 AM348_RS19380 04cd621b6f43270ce054f5b2edda8893 153 Pfam PF00293 NUDIX domain 4 114 1.5E-17 T 28-03-2018 IPR000086 NUDIX hydrolase domain GO:0016787 AM348_RS19380 04cd621b6f43270ce054f5b2edda8893 153 Gene3D G3DSA:3.90.79.10 1 146 3.0E-28 T 28-03-2018 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 2.1E-27 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.1E-27 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 2.1E-27 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 2.1E-27 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 2.1E-27 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 2.1E-27 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 SUPERFAMILY SSF118215 29 443 2.09E-97 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 Pfam PF00375 Sodium:dicarboxylate symporter family 29 443 2.6E-104 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS18930 b5c8d08a3fd2d8f806e8dc482484847a 463 Gene3D G3DSA:1.10.3860.10 19 450 6.9E-98 T 28-03-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 AM348_RS09495 b4051d65781d7351c9e39c58f242a9b0 135 PIRSF PIRSF020653 1 135 2.3E-74 T 28-03-2018 IPR009883 Inner membrane protein YgfX AM348_RS09495 b4051d65781d7351c9e39c58f242a9b0 135 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 2 128 1.1E-53 T 28-03-2018 IPR009883 Inner membrane protein YgfX AM348_RS09495 b4051d65781d7351c9e39c58f242a9b0 135 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 19 131 1.0E-38 T 28-03-2018 IPR009883 Inner membrane protein YgfX AM348_RS17605 80202749bdc6016e310c6d105e2b3b58 325 Gene3D G3DSA:1.20.1480.30 185 292 4.5E-5 T 28-03-2018 AM348_RS17605 80202749bdc6016e310c6d105e2b3b58 325 Gene3D G3DSA:1.20.120.20 22 165 4.6E-6 T 28-03-2018 AM348_RS17605 80202749bdc6016e310c6d105e2b3b58 325 SUPERFAMILY SSF58113 7 161 1.05E-5 T 28-03-2018 AM348_RS20175 900838dd10880b9f945c0e3f3f760e9f 131 ProDom PD498860 RC0070 95 127 0.003 T 28-03-2018 AM348_RS20175 900838dd10880b9f945c0e3f3f760e9f 131 Pfam PF07007 Lysozyme inhibitor LprI 22 110 3.4E-19 T 28-03-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal AM348_RS16175 4b40fce0e2ec0a442c1f0fa6e73f1a8d 182 SUPERFAMILY SSF53955 13 175 2.71E-31 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS16175 4b40fce0e2ec0a442c1f0fa6e73f1a8d 182 Gene3D G3DSA:1.10.530.40 3 181 1.7E-42 T 28-03-2018 IPR023347 Lysozyme domain GO:0003796 AM348_RS16175 4b40fce0e2ec0a442c1f0fa6e73f1a8d 182 Pfam PF00959 Phage lysozyme 51 171 1.4E-27 T 28-03-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 AM348_RS10105 52937f4feb5a5e0cc3382baf456e9a32 107 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 6 107 5.0E-31 T 28-03-2018 IPR022721 Protein of unknown function DUF3561 AM348_RS10105 52937f4feb5a5e0cc3382baf456e9a32 107 Pfam PF12084 Protein of unknown function (DUF3561) 1 107 3.1E-45 T 28-03-2018 IPR022721 Protein of unknown function DUF3561 AM348_RS00545 52aaba0bbab124411fa3eaa329f8a60c 240 Gene3D G3DSA:3.40.50.150 25 210 5.0E-17 T 28-03-2018 AM348_RS00545 52aaba0bbab124411fa3eaa329f8a60c 240 SUPERFAMILY SSF53335 77 190 2.34E-17 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS00545 52aaba0bbab124411fa3eaa329f8a60c 240 Pfam PF08241 Methyltransferase domain 75 125 1.7E-10 T 28-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM348_RS01870 89d6ce6038e27a48d5dcb37c55cdc589 78 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 1 78 5.0E-27 T 28-03-2018 IPR009885 Protein of unknown function DUF1435 AM348_RS01870 89d6ce6038e27a48d5dcb37c55cdc589 78 Pfam PF07256 Protein of unknown function (DUF1435) 1 75 1.7E-33 T 28-03-2018 IPR009885 Protein of unknown function DUF1435 AM348_RS20335 671b11f7a14d79ea8c8dddf53de532f0 467 Pfam PF04917 Bacterial shufflon protein, N-terminal constant region 45 398 6.2E-13 T 28-03-2018 IPR007001 Bacterial shufflon protein, N-terminal AM348_RS15045 a4b2be111c16cbc1b701169334baba8e 214 Gene3D G3DSA:1.10.287.500 36 168 4.6E-22 T 28-03-2018 AM348_RS15045 a4b2be111c16cbc1b701169334baba8e 214 PIRSF PIRSF002884 1 214 4.1E-88 T 28-03-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AM348_RS15045 a4b2be111c16cbc1b701169334baba8e 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 17 214 2.4E-77 T 28-03-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 AM348_RS15045 a4b2be111c16cbc1b701169334baba8e 214 SUPERFAMILY SSF75708 11 213 3.4E-68 T 28-03-2018 AM348_RS15045 a4b2be111c16cbc1b701169334baba8e 214 Gene3D G3DSA:1.20.5.590 7 34 1.1E-16 T 28-03-2018 AM348_RS17735 15774b075951d3407ff16f096c6a591d 72 ProDom PD027692 ANTIBIOTIC RESISTANCE MULTIPLE MARB 1 68 9.0E-18 T 28-03-2018 IPR025732 MarB protein AM348_RS17735 15774b075951d3407ff16f096c6a591d 72 Pfam PF13999 MarB protein 7 68 1.1E-34 T 28-03-2018 IPR025732 MarB protein AM348_RS13310 e50dfaabb83fc48ff05b1bfdcd4a97e9 315 Gene3D G3DSA:3.40.710.10 16 315 1.2E-44 T 28-03-2018 AM348_RS13310 e50dfaabb83fc48ff05b1bfdcd4a97e9 315 SUPERFAMILY SSF56601 3 277 6.84E-62 T 28-03-2018 IPR012338 Beta-lactamase/transpeptidase-like AM348_RS13310 e50dfaabb83fc48ff05b1bfdcd4a97e9 315 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 261 7.7E-88 T 28-03-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 AM348_RS13310 e50dfaabb83fc48ff05b1bfdcd4a97e9 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 5.2E-14 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS13310 e50dfaabb83fc48ff05b1bfdcd4a97e9 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 5.2E-14 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS13310 e50dfaabb83fc48ff05b1bfdcd4a97e9 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 5.2E-14 T 28-03-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 AM348_RS05460 be57021df8736e5c5816b29fc3166656 115 Pfam PF02656 Domain of unknown function (DUF202) 13 79 4.7E-16 T 28-03-2018 IPR003807 Domain of unknown function DUF202 AM348_RS11100 092f9e84b6491e48fd68ba2d5a7fa210 172 Pfam PF13689 Domain of unknown function (DUF4154) 32 167 1.9E-29 T 28-03-2018 IPR025293 Protein of unknown function DUF4154 AM348_RS02270 035aae8673a14f6915ab168205874090 173 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 3 169 2.1E-62 T 28-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM348_RS02270 035aae8673a14f6915ab168205874090 173 PIRSF PIRSF038321 1 173 6.6E-70 T 28-03-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 AM348_RS10550 8f4dcb7e66447d77d4bcd1bb3fafd6c9 518 Pfam PF04262 Glutamate-cysteine ligase 9 380 9.8E-173 T 28-03-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM348_RS10550 8f4dcb7e66447d77d4bcd1bb3fafd6c9 518 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 517 3.2E-279 T 28-03-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM348_RS10550 8f4dcb7e66447d77d4bcd1bb3fafd6c9 518 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 518 228.12 T 28-03-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 AM348_RS10550 8f4dcb7e66447d77d4bcd1bb3fafd6c9 518 SUPERFAMILY SSF55931 4 514 2.09E-204 T 28-03-2018 AM348_RS04395 7b7541a4509f38ab56d28b290897ff2e 317 SUPERFAMILY SSF51658 38 242 3.18E-20 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS04395 7b7541a4509f38ab56d28b290897ff2e 317 Gene3D G3DSA:3.20.20.150 2 314 2.2E-27 T 28-03-2018 AM348_RS04395 7b7541a4509f38ab56d28b290897ff2e 317 Pfam PF01261 Xylose isomerase-like TIM barrel 41 219 2.5E-13 T 28-03-2018 IPR013022 Xylose isomerase-like, TIM barrel domain AM348_RS00415 32a55d5bd5c98cab823f1d63c29edd4c 133 Pfam PF07417 Transcriptional regulator Crl 5 122 1.4E-54 T 28-03-2018 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 AM348_RS00415 32a55d5bd5c98cab823f1d63c29edd4c 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 1 128 32.902 T 28-03-2018 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 AM348_RS22745 b4bbe8972cfdb2519c0f803147bdbf86 174 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 168 4.7E-34 T 28-03-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase AM348_RS04475 54f69f4d6491e825354dc1fabccd2405 107 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 8 102 1.3E-11 T 28-03-2018 IPR008407 Branched-chain amino acid transport, AzlD AM348_RS08410 3fc14ecd926838b590b82d961f95234d 220 Pfam PF09335 SNARE associated Golgi protein 48 174 1.0E-21 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS20100 8f9a6d720e3671dc30cbfa4e8ebe4ca9 137 Pfam PF10614 Type VIII secretion system (T8SS), CsgF protein 6 128 7.6E-36 T 28-03-2018 IPR018893 Type VIII secretion system, CsgF AM348_RS08530 09eabbfc2ba9a3d97bbaafcfae19f160 384 PIRSF PIRSF003085 6 382 2.8E-125 T 28-03-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 AM348_RS08530 09eabbfc2ba9a3d97bbaafcfae19f160 384 SUPERFAMILY SSF53335 119 375 1.61E-77 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS08530 09eabbfc2ba9a3d97bbaafcfae19f160 384 Gene3D G3DSA:3.40.50.150 107 374 1.3E-62 T 28-03-2018 AM348_RS08530 09eabbfc2ba9a3d97bbaafcfae19f160 384 Pfam PF02353 Mycolic acid cyclopropane synthetase 110 370 1.7E-100 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS03690 1177f4d8e60e32a26eac3a18161ae5f8 279 Gene3D G3DSA:3.20.20.70 5 169 1.2E-9 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS03690 1177f4d8e60e32a26eac3a18161ae5f8 279 SUPERFAMILY SSF51366 86 261 3.14E-19 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS03690 1177f4d8e60e32a26eac3a18161ae5f8 279 SUPERFAMILY SSF51366 37 55 3.14E-19 T 28-03-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 AM348_RS03690 1177f4d8e60e32a26eac3a18161ae5f8 279 Gene3D G3DSA:3.20.20.70 170 263 4.6E-12 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS21620 45377c131ed648727c7145b9f001638c 105 Pfam PF14330 Domain of unknown function (DUF4387) 6 102 9.6E-39 T 28-03-2018 IPR025496 Protein of unknown function DUF4387 AM348_RS16030 a5f7ab5e17d18f42e4ee6a6e8d0792d0 346 Pfam PF03837 RecT family 36 201 4.1E-28 T 28-03-2018 IPR018330 RecT family GO:0003677|GO:0006259 AM348_RS05755 fe754ad1ef4445aecfc671decd198531 283 PIRSF PIRSF001359 1 283 4.5E-64 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS05755 fe754ad1ef4445aecfc671decd198531 283 SUPERFAMILY SSF51569 4 283 4.21E-74 T 28-03-2018 AM348_RS05755 fe754ad1ef4445aecfc671decd198531 283 Gene3D G3DSA:3.20.20.70 1 283 2.0E-72 T 28-03-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 AM348_RS05755 fe754ad1ef4445aecfc671decd198531 283 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 269 2.7E-74 T 28-03-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 AM348_RS18515 227e1f4273bf1d80718d144789ab9d00 493 Pfam PF13520 Amino acid permease 24 450 8.6E-48 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS18515 227e1f4273bf1d80718d144789ab9d00 493 PIRSF PIRSF006060 2 486 2.2E-66 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS03705 f936e707e9fc8e4c2c967a119fe5e7f6 90 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 3 90 1.0E-31 T 28-03-2018 IPR020317 Uncharacterised protein family YjbD AM348_RS03705 f936e707e9fc8e4c2c967a119fe5e7f6 90 Pfam PF11656 YjbD family (DUF3811) 3 90 4.4E-38 T 28-03-2018 IPR020317 Uncharacterised protein family YjbD AM348_RS22120 66d33d49775a629130f0f33a2674530a 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 3.7E-137 T 28-03-2018 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 AM348_RS22120 66d33d49775a629130f0f33a2674530a 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 28-03-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 AM348_RS22120 66d33d49775a629130f0f33a2674530a 370 Pfam PF01098 Cell cycle protein 21 364 6.2E-125 T 28-03-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 AM348_RS14500 527c49c96ca81d308938a7c8d41dfe8e 183 Gene3D G3DSA:1.10.150.130 84 176 0.046 T 28-03-2018 IPR023109 Integrase/recombinase, N-terminal AM348_RS14500 527c49c96ca81d308938a7c8d41dfe8e 183 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 166 5.4E-86 T 28-03-2018 IPR022523 Flagellar regulator, FliZ AM348_RS14500 527c49c96ca81d308938a7c8d41dfe8e 183 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 90 165 1.2E-13 T 28-03-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 AM348_RS08965 57f18ae0ac066ecde297017034bf0a6f 295 SUPERFAMILY SSF53474 70 294 2.87E-47 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS08965 57f18ae0ac066ecde297017034bf0a6f 295 Pfam PF01738 Dienelactone hydrolase family 85 293 4.1E-51 T 28-03-2018 IPR002925 Dienelactone hydrolase GO:0016787 AM348_RS08965 57f18ae0ac066ecde297017034bf0a6f 295 Gene3D G3DSA:3.40.50.1820 65 293 7.3E-38 T 28-03-2018 IPR029058 Alpha/Beta hydrolase fold AM348_RS08405 43c3cc421cb74d651a0b44012121789a 127 Hamap MF_00904 Modulator protein MzrA [mzrA]. 2 116 28.828 T 28-03-2018 IPR026574 Modulator protein MzrA AM348_RS08405 43c3cc421cb74d651a0b44012121789a 127 Pfam PF13721 SecD export protein N-terminal TM region 17 104 4.8E-15 T 28-03-2018 IPR027398 SecD export protein N-terminal TM domain AM348_RS16460 330969a3d1f84dedcf7fc2280074e4bb 83 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 3.1E-42 T 28-03-2018 IPR019633 Protein of unknown function DUF2498 AM348_RS10735 88dc8c35afe818dfc96aed87f29fb277 144 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 7 138 1.1E-18 T 28-03-2018 IPR009936 Protein of unknown function DUF1468 AM348_RS16335 ed23a5ea45d9b7a60df281a7c1648da0 129 Gene3D G3DSA:2.10.109.10 2 120 2.1E-10 T 28-03-2018 AM348_RS16335 ed23a5ea45d9b7a60df281a7c1648da0 129 SUPERFAMILY SSF51306 1 116 1.74E-19 T 28-03-2018 IPR015927 Peptidase S24/S26A/S26B/S26C AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 Gene3D G3DSA:2.70.98.10 45 419 1.8E-156 T 28-03-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 SUPERFAMILY SSF81296 422 537 9.8E-28 T 28-03-2018 IPR014756 Immunoglobulin E-set AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 Gene3D G3DSA:2.60.40.10 423 538 4.3E-27 T 28-03-2018 IPR013783 Immunoglobulin-like fold AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 SUPERFAMILY SSF74650 45 422 1.6E-147 T 28-03-2018 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 Hamap MF_01068 Glucans biosynthesis protein D [mdoD]. 1 544 60.454 T 28-03-2018 IPR023724 Glucan biosynthesis, MdoD AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 45 534 3.3E-182 T 28-03-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 AM348_RS17015 1307dfbd3a34db58989b7103237b5bc8 551 PIRSF PIRSF006281 1 538 5.0E-205 T 28-03-2018 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 Gene3D G3DSA:1.20.1050.10 145 288 6.5E-28 T 28-03-2018 AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 SUPERFAMILY SSF52833 37 130 4.49E-18 T 28-03-2018 IPR012336 Thioredoxin-like fold AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 Pfam PF13410 Glutathione S-transferase, C-terminal domain 174 244 9.2E-10 T 28-03-2018 AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 Gene3D G3DSA:3.40.30.10 45 144 1.4E-24 T 28-03-2018 AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 Pfam PF02798 Glutathione S-transferase, N-terminal domain 56 127 3.8E-7 T 28-03-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 SUPERFAMILY SSF47616 181 259 2.87E-32 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS09020 e8597d7b96f18cc1c11471893030c337 288 SUPERFAMILY SSF47616 117 152 2.87E-32 T 28-03-2018 IPR010987 Glutathione S-transferase, C-terminal-like AM348_RS13445 04ee2484e990fb72f2cf890a612c9307 425 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 418 2.9E-194 T 28-03-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 AM348_RS13445 04ee2484e990fb72f2cf890a612c9307 425 SUPERFAMILY SSF103473 5 404 4.19E-42 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS13445 04ee2484e990fb72f2cf890a612c9307 425 Pfam PF03825 Nucleoside H+ symporter 1 404 2.2E-182 T 28-03-2018 AM348_RS13445 04ee2484e990fb72f2cf890a612c9307 425 Gene3D G3DSA:1.20.1250.20 2 193 2.2E-15 T 28-03-2018 AM348_RS13445 04ee2484e990fb72f2cf890a612c9307 425 Gene3D G3DSA:1.20.1250.20 200 409 1.2E-21 T 28-03-2018 AM348_RS20665 6f9a5542a664d2a6cca32f538eeaaa62 182 SUPERFAMILY SSF55166 68 182 1.18E-31 T 28-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM348_RS20665 6f9a5542a664d2a6cca32f538eeaaa62 182 Gene3D G3DSA:3.30.1380.10 56 182 3.3E-22 T 28-03-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 AM348_RS20665 6f9a5542a664d2a6cca32f538eeaaa62 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 4.3E-61 T 28-03-2018 IPR010275 Protein of unknown function DUF882 AM348_RS02265 7cd6a380761d66a827d86cdb46c96832 91 SUPERFAMILY SSF47413 2 70 6.75E-30 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS02265 7cd6a380761d66a827d86cdb46c96832 91 Gene3D G3DSA:1.10.260.40 1 71 8.7E-15 T 28-03-2018 AM348_RS02265 7cd6a380761d66a827d86cdb46c96832 91 Pfam PF13693 Winged helix-turn-helix DNA-binding 5 78 1.7E-35 T 28-03-2018 AM348_RS15815 a89eef072777c461cc393838777c1f9d 117 SUPERFAMILY SSF75169 1 117 1.44E-34 T 28-03-2018 IPR027396 DsrEFH-like AM348_RS15815 a89eef072777c461cc393838777c1f9d 117 Pfam PF02635 DsrE/DsrF-like family 2 117 2.1E-22 T 28-03-2018 IPR003787 Sulphur relay, DsrE/F-like protein AM348_RS15815 a89eef072777c461cc393838777c1f9d 117 Gene3D G3DSA:3.40.1260.10 1 117 2.3E-28 T 28-03-2018 AM348_RS11720 8290125acacc276fcfcf692fa2d90c4c 153 Pfam PF07670 Nucleoside recognition 28 99 3.8E-8 T 28-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM348_RS12740 cc9522e32bb0d0530a2c4641b44708bc 180 Gene3D G3DSA:2.40.160.10 8 180 3.6E-10 T 28-03-2018 AM348_RS12740 cc9522e32bb0d0530a2c4641b44708bc 180 Pfam PF07437 YfaZ precursor 1 180 1.7E-83 T 28-03-2018 IPR009998 YfaZ AM348_RS12740 cc9522e32bb0d0530a2c4641b44708bc 180 SUPERFAMILY SSF56925 45 177 1.8E-8 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS05665 375d98dfbc64ecbb8fafc12f018330f1 498 Gene3D G3DSA:3.60.60.10 24 411 3.2E-41 T 28-03-2018 AM348_RS05665 375d98dfbc64ecbb8fafc12f018330f1 498 Pfam PF03577 Peptidase family C69 23 421 3.6E-123 T 28-03-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 AM348_RS14220 39eeca9bc871e116ee42c1a3d523fe8d 80 Pfam PF13986 Domain of unknown function (DUF4224) 5 49 4.4E-16 T 28-03-2018 IPR025319 Domain of unknown function DUF4224 AM348_RS08445 0c1b993b2033e7d79d245d1c9cad768f 322 Pfam PF03741 Integral membrane protein TerC family 80 282 1.1E-55 T 28-03-2018 IPR005496 Integral membrane protein TerC GO:0016021 AM348_RS08445 0c1b993b2033e7d79d245d1c9cad768f 322 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 7 312 1.9E-120 T 28-03-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 AM348_RS16660 7b2bd49717c9f48e700d91db6a4bc396 242 Gene3D G3DSA:3.40.630.10 37 234 6.2E-27 T 28-03-2018 AM348_RS16660 7b2bd49717c9f48e700d91db6a4bc396 242 Pfam PF00246 Zinc carboxypeptidase 73 157 8.0E-12 T 28-03-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 AM348_RS16660 7b2bd49717c9f48e700d91db6a4bc396 242 SUPERFAMILY SSF53187 134 231 2.18E-31 T 28-03-2018 AM348_RS16660 7b2bd49717c9f48e700d91db6a4bc396 242 SUPERFAMILY SSF53187 18 107 2.18E-31 T 28-03-2018 AM348_RS13675 63380442a0139929411b68d6c719884b 617 Pfam PF05170 AsmA family 3 220 6.0E-15 T 28-03-2018 IPR007844 AsmA AM348_RS13675 63380442a0139929411b68d6c719884b 617 Pfam PF13502 AsmA-like C-terminal region 358 537 4.1E-20 T 28-03-2018 IPR032712 AsmA-like, C-terminal AM348_RS03265 f02fb37b28fb8aa9140d04952da16f6e 150 Pfam PF06754 Phosphonate metabolism protein PhnG 7 147 2.1E-51 T 28-03-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS03265 f02fb37b28fb8aa9140d04952da16f6e 150 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 148 7.5E-51 T 28-03-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 AM348_RS05035 b3ef0e3d8af305c567a4176bcd9662dc 367 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 8 350 3.7E-170 T 28-03-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM348_RS05035 b3ef0e3d8af305c567a4176bcd9662dc 367 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 9 353 28.155 T 28-03-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 AM348_RS05035 b3ef0e3d8af305c567a4176bcd9662dc 367 Pfam PF00953 Glycosyl transferase family 4 75 232 2.4E-27 T 28-03-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193 AM348_RS10900 6a568e3fa9a123c53b907b247b8e5590 198 Pfam PF03729 Short repeat of unknown function (DUF308) 86 150 1.0E-6 T 28-03-2018 IPR005325 Protein of unknown function DUF308, membrane AM348_RS10900 6a568e3fa9a123c53b907b247b8e5590 198 Pfam PF03729 Short repeat of unknown function (DUF308) 26 97 3.5E-11 T 28-03-2018 IPR005325 Protein of unknown function DUF308, membrane AM348_RS03650 6e7b319347fd5d1f382fe287ac4da269 245 Pfam PF06251 Capsule biosynthesis GfcC 20 244 4.6E-85 T 28-03-2018 IPR010425 Domain of unknown function DUF1017 AM348_RS01660 f333a48edf725ff98e904c92ab8ca406 257 Pfam PF03883 Peroxide stress protein YaaA 1 243 9.3E-93 T 28-03-2018 IPR005583 Peroxide stress protein YaaA AM348_RS01660 f333a48edf725ff98e904c92ab8ca406 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.393 T 28-03-2018 IPR005583 Peroxide stress protein YaaA AM348_RS03730 f4a39bc0bcf6dd42c931c254cd647f0c 164 Pfam PF03830 PTS system sorbose subfamily IIB component 3 149 2.1E-52 T 28-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM348_RS03730 f4a39bc0bcf6dd42c931c254cd647f0c 164 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 2 151 1.2E-68 T 28-03-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 AM348_RS03730 f4a39bc0bcf6dd42c931c254cd647f0c 164 Gene3D G3DSA:3.40.35.10 2 158 3.4E-58 T 28-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM348_RS03730 f4a39bc0bcf6dd42c931c254cd647f0c 164 SUPERFAMILY SSF52728 1 160 5.62E-54 T 28-03-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 AM348_RS20415 515301c7a9008b8b8801d5db525378af 159 Pfam PF15948 Domain of unknown function (DUF4756) 1 158 1.1E-75 T 28-03-2018 IPR031864 Protein of unknown function DUF4756 AM348_RS00830 99f66828097d130da3001ff5309b790d 207 Pfam PF03458 UPF0126 domain 4 78 2.6E-23 T 28-03-2018 IPR005115 Uncharacterised domain UPF0126 AM348_RS00830 99f66828097d130da3001ff5309b790d 207 Pfam PF03458 UPF0126 domain 92 161 3.4E-18 T 28-03-2018 IPR005115 Uncharacterised domain UPF0126 AM348_RS21885 1ca7d1173523b91f7764a6d03c76e5a1 95 SUPERFAMILY SSF47598 51 84 8.9E-5 T 28-03-2018 IPR010985 Ribbon-helix-helix GO:0006355 AM348_RS21885 1ca7d1173523b91f7764a6d03c76e5a1 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 87 7.5E-10 T 28-03-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 AM348_RS21885 1ca7d1173523b91f7764a6d03c76e5a1 95 Gene3D G3DSA:1.10.1220.10 50 88 1.5E-7 T 28-03-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 AM348_RS22890 a98b7ca19845396a9ec399b730931123 207 Gene3D G3DSA:3.40.50.720 3 200 7.8E-18 T 28-03-2018 AM348_RS22890 a98b7ca19845396a9ec399b730931123 207 Pfam PF13460 NAD(P)H-binding 13 190 2.0E-31 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS22890 a98b7ca19845396a9ec399b730931123 207 SUPERFAMILY SSF51735 5 202 2.63E-25 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 SUPERFAMILY SSF54373 269 359 2.49E-17 T 28-03-2018 AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 54.687 T 28-03-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 Gene3D G3DSA:3.50.50.60 1 424 1.1E-46 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 Pfam PF01266 FAD dependent oxidoreductase 2 396 7.7E-74 T 28-03-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 SUPERFAMILY SSF51905 107 271 4.79E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 SUPERFAMILY SSF51905 1 54 4.79E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS15535 a47b8dc8009f31f4ef12895d177834c3 432 SUPERFAMILY SSF51905 359 419 4.79E-53 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS05010 09b9a5e5cc7f141d6ad09065e55d7f6f 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 1.0E-160 T 28-03-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 AM348_RS05010 09b9a5e5cc7f141d6ad09065e55d7f6f 293 Gene3D G3DSA:3.90.550.10 1 292 1.0E-67 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS05010 09b9a5e5cc7f141d6ad09065e55d7f6f 293 SUPERFAMILY SSF53448 1 286 1.51E-92 T 28-03-2018 IPR029044 Nucleotide-diphospho-sugar transferases AM348_RS05010 09b9a5e5cc7f141d6ad09065e55d7f6f 293 Pfam PF00483 Nucleotidyl transferase 2 238 3.1E-72 T 28-03-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 AM348_RS05480 1f0c13e32240ba224c6b105541d4fd4b 445 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 445 5.5E-172 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS05480 1f0c13e32240ba224c6b105541d4fd4b 445 Pfam PF02447 GntP family permease 7 444 8.5E-163 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS05480 1f0c13e32240ba224c6b105541d4fd4b 445 PIRSF PIRSF002746 2 445 7.8E-146 T 28-03-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 AM348_RS22910 e0223a046f5d3c117d82fef9273a6242 264 Pfam PF01963 TraB family 30 264 1.3E-38 T 28-03-2018 IPR002816 Pheromone shutdown, TraB AM348_RS13345 80cfe1d3ed36fe4c90b28dfaf3f6570c 35 Hamap MF_01362 UPF0387 membrane protein YohO [yohO]. 1 35 15.577 T 28-03-2018 IPR020870 Uncharacterised protein family UPF0387, membrane GO:0005886 AM348_RS11755 0b7d9e44565348bd5928cde90ed26f3b 287 Pfam PF04228 Putative neutral zinc metallopeptidase 1 283 9.1E-142 T 28-03-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative AM348_RS04305 878362a21856105f33ff0b290970126e 81 Pfam PF06005 Cell division protein ZapB 3 80 3.9E-24 T 28-03-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 AM348_RS04305 878362a21856105f33ff0b290970126e 81 Hamap MF_01196 Cell division protein ZapB [zapB]. 3 81 18.254 T 28-03-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 AM348_RS04305 878362a21856105f33ff0b290970126e 81 Gene3D G3DSA:1.20.5.370 49 81 6.0E-9 T 28-03-2018 AM348_RS04305 878362a21856105f33ff0b290970126e 81 Gene3D G3DSA:1.20.5.370 15 48 9.8E-13 T 28-03-2018 AM348_RS08680 9a58c6932f834e29b8a5629f34c42180 302 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 14 286 1.0E-120 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS08680 9a58c6932f834e29b8a5629f34c42180 302 Pfam PF05681 Fumarate hydratase (Fumerase) 16 283 1.4E-78 T 28-03-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 AM348_RS07520 851c3207b21746e4fffb3b74a42fef0e 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 4.1E-59 T 28-03-2018 IPR007456 Smg AM348_RS07520 851c3207b21746e4fffb3b74a42fef0e 157 Hamap MF_00598 Protein Smg [smg]. 1 157 33.496 T 28-03-2018 IPR007456 Smg AM348_RS22600 ba5134fe9866fb2d7fc0aaa93e36ac73 115 Pfam PF11604 Copper binding periplasmic protein CusF 47 112 4.1E-24 T 28-03-2018 IPR021647 Copper binding periplasmic protein CusF AM348_RS02650 b7cbe3c499f06f51c1c924a0d81ea79b 114 SUPERFAMILY SSF110857 1 111 2.09E-34 T 28-03-2018 IPR013024 Gamma-glutamyl cyclotransferase-like AM348_RS02650 b7cbe3c499f06f51c1c924a0d81ea79b 114 Gene3D G3DSA:3.10.490.10 1 112 1.1E-28 T 28-03-2018 AM348_RS02650 b7cbe3c499f06f51c1c924a0d81ea79b 114 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 3.1E-24 T 28-03-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like AM348_RS22835 f486a7ceef62415afaa52a442d5fc2ab 259 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 6 251 3.1E-109 T 28-03-2018 IPR005226 UPF0014 family AM348_RS22835 f486a7ceef62415afaa52a442d5fc2ab 259 Pfam PF03649 Uncharacterised protein family (UPF0014) 10 245 8.0E-84 T 28-03-2018 IPR005226 UPF0014 family AM348_RS16090 b6103bae801c562c560fc26d7c181abb 179 Pfam PF06254 Putative bacterial toxin ydaT 67 154 4.4E-36 T 28-03-2018 IPR009364 Putative bacterial toxin ydaT AM348_RS16090 b6103bae801c562c560fc26d7c181abb 179 Gene3D G3DSA:1.10.3600.10 28 135 9.0E-31 T 28-03-2018 IPR009364 Putative bacterial toxin ydaT AM348_RS12040 5054ab25cdf57185a2ae15527be5c6ea 332 PIRSF PIRSF026166 1 332 3.6E-134 T 28-03-2018 IPR016833 Putative sodium bile acid cotransporter AM348_RS12040 5054ab25cdf57185a2ae15527be5c6ea 332 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 315 3.2E-101 T 28-03-2018 IPR016833 Putative sodium bile acid cotransporter AM348_RS00955 952ad019697ce92ca00f6e5ac3c76ccf 194 Gene3D G3DSA:2.60.40.1090 29 194 9.4E-21 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS00955 952ad019697ce92ca00f6e5ac3c76ccf 194 SUPERFAMILY SSF49401 30 194 9.94E-16 T 28-03-2018 IPR008966 Adhesion domain AM348_RS00955 952ad019697ce92ca00f6e5ac3c76ccf 194 Pfam PF00419 Fimbrial protein 32 194 3.3E-9 T 28-03-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 AM348_RS14045 bec6963df00afab634cd92be6718c0ac 172 SUPERFAMILY SSF47148 36 172 3.92E-64 T 28-03-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS14045 bec6963df00afab634cd92be6718c0ac 172 Pfam PF02287 Dehydratase small subunit 38 169 4.0E-62 T 28-03-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS14045 bec6963df00afab634cd92be6718c0ac 172 PIRSF PIRSF018505 1 172 6.2E-77 T 28-03-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 AM348_RS12390 25bf875a36a7f66e4409c2c767b0fc4b 182 Pfam PF04315 Elongation factor P hydroxylase 13 175 2.6E-81 T 28-03-2018 IPR007411 Elongation factor P hydroxylase AM348_RS03030 636c8dfc281c367baaa830e2ebbd671d 287 Pfam PF15922 YjeJ-like 1 282 2.3E-142 T 28-03-2018 IPR031810 YjeJ-like AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 Pfam PF02254 TrkA-N domain 403 514 4.2E-24 T 28-03-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 Gene3D G3DSA:1.20.91.10 228 309 1.5E-12 T 28-03-2018 AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 598 47.127 T 28-03-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 SUPERFAMILY SSF51735 402 529 1.92E-29 T 28-03-2018 IPR016040 NAD(P)-binding domain AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 5.4E-93 T 28-03-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 Pfam PF00999 Sodium/hydrogen exchanger family 11 373 1.5E-66 T 28-03-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 AM348_RS07250 52eb153931b38d6d7c797d355a4812db 601 Gene3D G3DSA:3.40.50.720 397 562 6.2E-19 T 28-03-2018 AM348_RS16930 7756752a9197e8d4c4938ac81cda91c9 232 ProDom PD038144 ANTITERMINATOR Q PROPHAGE TRANSCRIPTION ANTITERMINATION CP-933P GIFSY-1 ENCODED BY Q-LIKE 1 214 3.0E-27 T 28-03-2018 IPR010455 Bacteriophage 82, GpQ AM348_RS16930 7756752a9197e8d4c4938ac81cda91c9 232 Pfam PF06323 Phage antitermination protein Q 6 214 6.5E-53 T 28-03-2018 IPR010455 Bacteriophage 82, GpQ AM348_RS01645 612478479f4a302ed85c3c6f5acba11e 195 SMART SM00852 7 153 4.8E-22 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS01645 612478479f4a302ed85c3c6f5acba11e 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 28-03-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 AM348_RS01645 612478479f4a302ed85c3c6f5acba11e 195 SUPERFAMILY SSF53218 3 188 1.07E-47 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS01645 612478479f4a302ed85c3c6f5acba11e 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 146 1.3E-39 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS01645 612478479f4a302ed85c3c6f5acba11e 195 Gene3D G3DSA:3.40.980.10 1 188 4.7E-40 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS01645 612478479f4a302ed85c3c6f5acba11e 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 8.3E-28 T 28-03-2018 IPR001453 MoaB/Mog domain AM348_RS05130 1649078ffe5f8e92a1e9059c0de9583f 112 Pfam PF04219 Protein of unknown function, DUF 10 98 1.3E-38 T 28-03-2018 IPR007335 Protein of unknown function DUF413 AM348_RS08435 47541d28594960867544f86ce167feb7 184 PIRSF PIRSF011443 1 180 1.7E-73 T 28-03-2018 IPR026267 Inner membrane protein YgjV AM348_RS08435 47541d28594960867544f86ce167feb7 184 Pfam PF10688 Bacterial inner membrane protein 5 163 3.1E-57 T 28-03-2018 IPR019629 Uncharacterised protein family HI1736/YgjV AM348_RS12610 1f9f3726748909b81d4501cf48652e0e 325 Pfam PF00146 NADH dehydrogenase 17 317 4.5E-121 T 28-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12610 1f9f3726748909b81d4501cf48652e0e 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 28-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12610 1f9f3726748909b81d4501cf48652e0e 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 28-03-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12610 1f9f3726748909b81d4501cf48652e0e 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 24.057 T 28-03-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS08665 f10d31da7c1efbc3e9afc915246caa37 246 Hamap MF_01384 Urease accessory protein UreD [ureD]. 1 230 25.172 T 28-03-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AM348_RS08665 f10d31da7c1efbc3e9afc915246caa37 246 Pfam PF01774 UreD urease accessory protein 26 218 3.0E-45 T 28-03-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 AM348_RS19360 45d02b9f49095c404f805b11c3204702 161 SUPERFAMILY SSF56925 31 161 2.15E-19 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS19360 45d02b9f49095c404f805b11c3204702 161 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 45 57 6.1E-10 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS19360 45d02b9f49095c404f805b11c3204702 161 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 122 143 6.1E-10 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS19360 45d02b9f49095c404f805b11c3204702 161 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 149 160 6.1E-10 T 28-03-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 AM348_RS19360 45d02b9f49095c404f805b11c3204702 161 Gene3D G3DSA:2.40.160.20 23 161 1.6E-11 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS19360 45d02b9f49095c404f805b11c3204702 161 Pfam PF13505 Outer membrane protein beta-barrel domain 13 161 1.4E-13 T 28-03-2018 IPR027385 Outer membrane protein beta-barrel AM348_RS10675 b40493a40d20b73cab44f9e34da10a4f 52 Pfam PF01679 Proteolipid membrane potential modulator 3 48 6.5E-18 T 28-03-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 AM348_RS10675 b40493a40d20b73cab44f9e34da10a4f 52 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 7 22 - T 28-03-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 AM348_RS07475 d7fb3a9a9036c9e458b2dec4ad815f04 122 Pfam PF09350 Domain of unknown function (DUF1992) 7 73 6.6E-22 T 28-03-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain AM348_RS06405 514edbb0bbc661aaa96f605a93ba61fb 116 SUPERFAMILY SSF53955 11 105 4.3E-22 T 28-03-2018 IPR023346 Lysozyme-like domain AM348_RS06405 514edbb0bbc661aaa96f605a93ba61fb 116 Gene3D G3DSA:1.10.530.40 2 108 6.0E-19 T 28-03-2018 IPR023347 Lysozyme domain GO:0003796 AM348_RS04910 d89ab7ab2e66fa0a5ba6d5c1efa8ccb5 235 Pfam PF04340 Protein of unknown function, DUF484 10 232 2.5E-82 T 28-03-2018 IPR007435 Protein of unknown function DUF484 AM348_RS04910 d89ab7ab2e66fa0a5ba6d5c1efa8ccb5 235 Gene3D G3DSA:3.30.450.40 49 224 9.6E-6 T 28-03-2018 IPR029016 GAF domain-like AM348_RS23010 b6e589740f980c61cf1af330f985d625 55 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 3.6E-23 T 28-03-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related AM348_RS22175 805ff6a7e056b8c53d9ffc4a7afe22fb 461 Pfam PF03606 C4-dicarboxylate anaerobic carrier 6 451 8.1E-134 T 28-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AM348_RS22175 805ff6a7e056b8c53d9ffc4a7afe22fb 461 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 58 441 2.4E-191 T 28-03-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 AM348_RS08170 a0b30988259271086c31af2ac1f2647a 292 Pfam PF01136 Peptidase family U32 93 198 1.0E-11 T 28-03-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 AM348_RS09570 0886c7c3864600e7f252a1ce09c865b1 76 Pfam PF06902 Divergent 4Fe-4S mono-cluster 13 76 2.0E-28 T 28-03-2018 IPR010693 Divergent 4Fe-4S mono-cluster AM348_RS01640 16ec572b1aaa5f9d65bbb5db3c852c9c 435 Gene3D G3DSA:1.20.1250.20 14 228 1.4E-25 T 28-03-2018 AM348_RS01640 16ec572b1aaa5f9d65bbb5db3c852c9c 435 Gene3D G3DSA:1.20.1250.20 239 433 1.1E-19 T 28-03-2018 AM348_RS01640 16ec572b1aaa5f9d65bbb5db3c852c9c 435 SUPERFAMILY SSF103473 11 418 8.76E-62 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS01640 16ec572b1aaa5f9d65bbb5db3c852c9c 435 Pfam PF07690 Major Facilitator Superfamily 59 380 1.2E-27 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS14460 371e9abc5e5b0396e326eace4a1a31e5 137 Pfam PF13987 YedD-like protein 25 129 5.4E-55 T 28-03-2018 IPR025596 YedD-like protein AM348_RS15770 4ec34dcb7c33e9dcc50dbf5c2ff1c35a 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 5.1E-41 T 28-03-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 AM348_RS15770 4ec34dcb7c33e9dcc50dbf5c2ff1c35a 269 Pfam PF13371 Tetratricopeptide repeat 187 259 8.5E-26 T 28-03-2018 AM348_RS15770 4ec34dcb7c33e9dcc50dbf5c2ff1c35a 269 Gene3D G3DSA:1.25.40.10 35 265 5.8E-5 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS14660 e6a3950348dc20b3aec6354003b1b15c 306 Pfam PF09524 Conserved phage C-terminus (Phg_2220_C) 191 263 2.0E-23 T 28-03-2018 IPR011741 Phage conserved hypothetical protein, C-terminal AM348_RS14360 080ac81b715f9315fcc0ee784ed06b8b 61 Pfam PF09926 Uncharacterized small protein (DUF2158) 9 48 1.0E-7 T 28-03-2018 IPR019226 Protein of unknown function DUF2158 AM348_RS10355 1ffc10ebbd8473113469324509cbe719 152 Pfam PF11046 Transcriptional repressor of hyc and hyp operons 1 145 2.7E-74 T 28-03-2018 IPR021285 Transcription regulator, HycA AM348_RS06360 311fed2a93bd4828c3f42d28a2fb75ef 497 Pfam PF05193 Peptidase M16 inactive domain 201 377 3.0E-16 T 28-03-2018 IPR007863 Peptidase M16, C-terminal AM348_RS06360 311fed2a93bd4828c3f42d28a2fb75ef 497 SUPERFAMILY SSF63411 322 457 9.17E-6 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS06360 311fed2a93bd4828c3f42d28a2fb75ef 497 Gene3D G3DSA:3.30.830.10 256 471 1.4E-23 T 28-03-2018 AM348_RS06360 311fed2a93bd4828c3f42d28a2fb75ef 497 Gene3D G3DSA:3.30.830.10 9 255 1.1E-23 T 28-03-2018 AM348_RS06360 311fed2a93bd4828c3f42d28a2fb75ef 497 SUPERFAMILY SSF63411 29 239 1.01E-21 T 28-03-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 AM348_RS21765 800215e557c908b6815936b6dd4de341 134 Pfam PF10008 Uncharacterized protein conserved in bacteria (DUF2251) 23 111 3.9E-35 T 28-03-2018 IPR014449 Uncharacterised conserved protein UCP007050, HI0931 AM348_RS01920 e1f5a68222106b7b70d6163aee44fd2f 245 PIRSF PIRSF003073 2 245 5.2E-36 T 28-03-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein AM348_RS01920 e1f5a68222106b7b70d6163aee44fd2f 245 SUPERFAMILY SSF52540 64 222 3.6E-23 T 28-03-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase AM348_RS01920 e1f5a68222106b7b70d6163aee44fd2f 245 Pfam PF01695 IstB-like ATP binding protein 92 218 1.2E-17 T 28-03-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 AM348_RS01920 e1f5a68222106b7b70d6163aee44fd2f 245 SMART SM00382 98 227 8.3E-6 T 28-03-2018 IPR003593 AAA+ ATPase domain AM348_RS01920 e1f5a68222106b7b70d6163aee44fd2f 245 Gene3D G3DSA:3.40.50.300 48 225 4.6E-20 T 28-03-2018 AM348_RS06690 56d298685c2086dd8a6a2642f67e08e6 221 Pfam PF02592 Putative vitamin uptake transporter 43 199 5.7E-37 T 28-03-2018 IPR003744 Queuosine precursor transporter AM348_RS06690 56d298685c2086dd8a6a2642f67e08e6 221 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 4.9E-69 T 28-03-2018 IPR003744 Queuosine precursor transporter AM348_RS14150 cd2f31804ca323f96ed620913b2494c8 225 Pfam PF02361 Cobalt transport protein 10 221 3.4E-50 T 28-03-2018 IPR003339 ABC/ECF transporter, transmembrane component AM348_RS14150 cd2f31804ca323f96ed620913b2494c8 225 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 17 216 1.9E-52 T 28-03-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 AM348_RS16700 0afc2fc707524729b0712850a2645239 135 Gene3D G3DSA:2.60.120.10 12 135 1.9E-30 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS16700 0afc2fc707524729b0712850a2645239 135 SUPERFAMILY SSF51182 15 132 1.75E-28 T 28-03-2018 IPR011051 RmlC-like cupin domain AM348_RS16700 0afc2fc707524729b0712850a2645239 135 Pfam PF07883 Cupin domain 43 102 7.7E-9 T 28-03-2018 IPR013096 Cupin 2, conserved barrel AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 2.1E-11 T 28-03-2018 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.1E-11 T 28-03-2018 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 2.1E-11 T 28-03-2018 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 311 5.1E-45 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 Gene3D G3DSA:3.50.50.60 129 324 4.2E-29 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 Gene3D G3DSA:3.50.50.60 2 128 1.6E-16 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 SUPERFAMILY SSF51905 2 323 4.81E-29 T 28-03-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.1E-8 T 28-03-2018 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 2.1E-8 T 28-03-2018 AM348_RS06450 49633cd08b1bec1ac5fe865cfc375644 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 285 292 2.1E-8 T 28-03-2018 AM348_RS00375 cd23c68a31c5d9ad973c9d9b2a7be7bb 535 Gene3D G3DSA:2.60.120.260 22 349 0.0077 T 28-03-2018 IPR008979 Galactose-binding domain-like AM348_RS00290 2c314882ffc8da49d7f716234ee427e5 29 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.0E-10 T 28-03-2018 IPR012994 Membrane bound YbgT-like AM348_RS10185 6e9ec7d5d44c9d47960896b26fef71d6 201 Pfam PF15977 Winged helix-turn-helix DNA binding 139 196 4.4E-13 T 28-03-2018 AM348_RS10185 6e9ec7d5d44c9d47960896b26fef71d6 201 Gene3D G3DSA:1.10.10.10 116 201 6.2E-4 T 28-03-2018 IPR011991 Winged helix-turn-helix DNA-binding domain AM348_RS10185 6e9ec7d5d44c9d47960896b26fef71d6 201 Gene3D G3DSA:2.60.120.10 35 115 7.5E-4 T 28-03-2018 IPR014710 RmlC-like jelly roll fold AM348_RS01930 c55393e5a375b8285c7ccc64e2742c50 763 Gene3D G3DSA:3.40.720.10 151 449 4.2E-31 T 28-03-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 AM348_RS01930 c55393e5a375b8285c7ccc64e2742c50 763 Hamap MF_01070 Phosphoglycerol transferase I [mdoB]. 6 738 54.178 T 28-03-2018 IPR020881 Phosphoglycerol transferase I GO:0005886|GO:0008960|GO:0009250 KEGG: 00561+2.7.8.20 AM348_RS01930 c55393e5a375b8285c7ccc64e2742c50 763 Pfam PF00884 Sulfatase 163 446 1.9E-22 T 28-03-2018 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 AM348_RS01930 c55393e5a375b8285c7ccc64e2742c50 763 SUPERFAMILY SSF53649 161 459 3.27E-30 T 28-03-2018 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 AM348_RS08080 6e1624284c95b3ca8f49240950d72eae 488 Pfam PF03606 C4-dicarboxylate anaerobic carrier 1 452 1.2E-77 T 28-03-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 AM348_RS08080 6e1624284c95b3ca8f49240950d72eae 488 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 59 442 7.6E-113 T 28-03-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 AM348_RS20520 84e8b0af680d36661a2f8ceb9580cf15 148 Pfam PF03733 Inner membrane component domain 4 53 2.0E-9 T 28-03-2018 IPR005185 Inner membrane component domain AM348_RS20520 84e8b0af680d36661a2f8ceb9580cf15 148 Pfam PF03733 Inner membrane component domain 77 127 4.3E-18 T 28-03-2018 IPR005185 Inner membrane component domain AM348_RS20520 84e8b0af680d36661a2f8ceb9580cf15 148 PIRSF PIRSF028777 1 139 5.0E-54 T 28-03-2018 IPR031308 Uncharacterised conserved protein UCP028777 AM348_RS03015 e7c4cd60b1a87d0cbb8185f083084f3d 44 Pfam PF08085 Entericidin EcnA/B family 23 43 3.2E-7 T 28-03-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 AM348_RS14170 9dd511f0930881d9110428556502d893 247 Pfam PF02654 Cobalamin-5-phosphate synthase 9 244 2.5E-53 T 28-03-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14170 9dd511f0930881d9110428556502d893 247 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 1 246 1.8E-81 T 28-03-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS14170 9dd511f0930881d9110428556502d893 247 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 247 49.095 T 28-03-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 AM348_RS09775 44e176cd16a14481715174dadf05490f 135 Pfam PF10713 Protein of unknown function (DUF2509) 15 132 1.3E-28 T 28-03-2018 IPR019652 Protein of unknown function DUF2509 AM348_RS10645 d5ab927bafff27c1f1bee55cb6a5bc59 116 SUPERFAMILY SSF159894 1 111 1.88E-59 T 28-03-2018 AM348_RS10645 d5ab927bafff27c1f1bee55cb6a5bc59 116 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 1.1E-59 T 28-03-2018 IPR018994 Protein of unknown function DUF2002 AM348_RS16135 91a0842d1498582e94850ecc20657c5c 199 Pfam PF07105 Protein of unknown function (DUF1367) 2 197 1.9E-90 T 28-03-2018 IPR009797 Protein of unknown function DUF1367 AM348_RS00470 60d84c259a253586491f530fc5c16d31 136 Pfam PF07813 LTXXQ motif family protein 36 128 1.1E-6 T 28-03-2018 IPR012899 LTXXQ motif family protein GO:0042597 AM348_RS16110 12a28ea99c01fd63df326e3794e5cf32 161 Pfam PF08241 Methyltransferase domain 12 118 2.5E-5 T 28-03-2018 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 AM348_RS16110 12a28ea99c01fd63df326e3794e5cf32 161 Gene3D G3DSA:3.40.50.150 1 149 3.6E-14 T 28-03-2018 AM348_RS16110 12a28ea99c01fd63df326e3794e5cf32 161 SUPERFAMILY SSF53335 3 159 2.13E-14 T 28-03-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase AM348_RS00175 c5d6601909b253e103aa3795105ff062 209 Pfam PF11140 Protein of unknown function (DUF2913) 15 183 1.3E-21 T 28-03-2018 IPR021316 Protein of unknown function DUF2913 AM348_RS09350 18de6ab7d19f89a87e28ff350b047950 248 Pfam PF04402 Protein of unknown function (DUF541) 30 231 2.4E-44 T 28-03-2018 IPR007497 Protein of unknown function DUF541 AM348_RS15335 1cab5c29f0b5c92996009c2253a2b875 47 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 1.3E-29 T 28-03-2018 IPR019672 Protein of unknown function DUF2627 AM348_RS15890 647e3b34024f10e0d6a72cc70ec26364 225 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 1 225 2.2E-123 T 28-03-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 AM348_RS15890 647e3b34024f10e0d6a72cc70ec26364 225 Pfam PF02665 Nitrate reductase gamma subunit 5 224 8.7E-81 T 28-03-2018 IPR023234 NarG-like domain AM348_RS15890 647e3b34024f10e0d6a72cc70ec26364 225 SUPERFAMILY SSF103501 1 224 8.63E-71 T 28-03-2018 IPR023234 NarG-like domain AM348_RS15890 647e3b34024f10e0d6a72cc70ec26364 225 Gene3D G3DSA:1.20.950.20 1 216 4.6E-43 T 28-03-2018 AM348_RS01245 7d6d6f3d3d4b3e04142d93bbd022622d 121 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 36 118 1.3E-28 T 28-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 AM348_RS01245 7d6d6f3d3d4b3e04142d93bbd022622d 121 Pfam PF04999 Cell division protein FtsL 25 119 8.1E-36 T 28-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 AM348_RS01245 7d6d6f3d3d4b3e04142d93bbd022622d 121 Hamap MF_00910 Cell division protein FtsL [ftsL]. 35 118 16.727 T 28-03-2018 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 AM348_RS23520 5018e5ea3e46c56b0105206a0c8a827d 106 Pfam PF07769 psiF repeat 27 59 1.6E-18 T 28-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat AM348_RS23520 5018e5ea3e46c56b0105206a0c8a827d 106 Pfam PF07769 psiF repeat 71 103 1.8E-16 T 28-03-2018 IPR011690 Phosphate-starvation-induced PsiF repeat AM348_RS10840 50684f894c7c35ea8aa4e35d85ed5700 166 Gene3D G3DSA:3.10.450.160 32 166 2.0E-27 T 28-03-2018 AM348_RS16855 e9f031a1cada18fe88cfebb41570da3f 263 Pfam PF02698 DUF218 domain 38 171 1.4E-15 T 28-03-2018 IPR003848 Domain of unknown function DUF218 AM348_RS16855 e9f031a1cada18fe88cfebb41570da3f 263 Gene3D G3DSA:1.10.3620.10 148 252 1.4E-39 T 28-03-2018 AM348_RS14665 e2c2c3cf5b94993c952a9199d7f72a80 147 ProDom PD096295 YFDN SB43 ORF40 1 146 3.0E-9 T 28-03-2018 IPR020344 Bacteriophage SfV, Orf40 AM348_RS22265 4206ea43598dc02f5e0f3ff3e832de73 184 Gene3D G3DSA:1.10.3480.10 15 184 5.3E-27 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS22265 4206ea43598dc02f5e0f3ff3e832de73 184 Pfam PF02613 Nitrate reductase delta subunit 31 150 3.2E-21 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS22265 4206ea43598dc02f5e0f3ff3e832de73 184 SUPERFAMILY SSF89155 3 180 1.12E-33 T 28-03-2018 IPR020945 DMSO/Nitrate reductase chaperone AM348_RS02865 530a620ab95eb896b11b6dcb3d291de1 65 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 5.3E-21 T 28-03-2018 IPR019201 Protein of unknown function DUF2065 AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 SUPERFAMILY SSF143414 79 158 4.05E-9 T 28-03-2018 AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 PIRSF PIRSF012290 38 270 4.6E-108 T 28-03-2018 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0009605 AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 Pfam PF00936 BMC domain 80 154 4.0E-12 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 Pfam PF00936 BMC domain 186 254 4.9E-14 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 SUPERFAMILY SSF143414 185 264 5.76E-12 T 28-03-2018 AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 SMART SM00877 185 267 3.1E-16 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 SMART SM00877 79 161 2.1E-11 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14060 8792b6e1d60f37bbaa76050adecdf037 270 TIGRFAM TIGR04501 microcomp_PduB: microcompartment protein PduB 46 270 5.7E-120 T 28-03-2018 IPR030984 Microcompartment protein PduB GO:0005198 AM348_RS18780 26d62bf97cf0acb905016219075e23c1 277 Gene3D G3DSA:3.40.50.300 55 271 3.7E-5 T 28-03-2018 AM348_RS18780 26d62bf97cf0acb905016219075e23c1 277 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 6 276 72.423 T 28-03-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein AM348_RS18780 26d62bf97cf0acb905016219075e23c1 277 Pfam PF03618 Kinase/pyrophosphorylase 9 267 2.8E-72 T 28-03-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 AM348_RS20190 91c8f842004a93664fbb55ab358b3903 57 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 3.0E-10 T 28-03-2018 IPR019626 Stress-induced protein, KGG, repeat AM348_RS20190 91c8f842004a93664fbb55ab358b3903 57 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 52 1.0E-9 T 28-03-2018 IPR019626 Stress-induced protein, KGG, repeat AM348_RS08400 84e105a6d8dde586768a7e630b5c9d7d 122 Pfam PF06476 Protein of unknown function (DUF1090) 11 116 7.2E-37 T 28-03-2018 IPR009468 Protein of unknown function DUF1090 AM348_RS03035 563d3d416b921011a3b9778e96b38701 117 Pfam PF13698 Domain of unknown function (DUF4156) 23 115 2.4E-31 T 28-03-2018 IPR025294 Protein of unknown function DUF4156 AM348_RS11225 d4b0c382ed030926de048096c2568125 195 Pfam PF01810 LysE type translocator 15 194 1.3E-13 T 28-03-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 AM348_RS06040 60eac475e8482b68b921e6147e846571 68 Gene3D G3DSA:1.20.970.20 14 63 6.6E-18 T 28-03-2018 AM348_RS06040 60eac475e8482b68b921e6147e846571 68 SUPERFAMILY SSF46575 15 61 1.96E-6 T 28-03-2018 AM348_RS09200 94a314bb740bfc6560f382a6fe4507b0 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 2.1E-41 T 28-03-2018 IPR007416 Protein of unknown function DUF469 AM348_RS14795 afda3ffe891b895b55ff4f3ddddca589 123 Pfam PF06222 Phage tail assembly chaperone 1 121 1.0E-45 T 28-03-2018 IPR010411 Bacteriophage tail assembly protein, Gp13/14 AM348_RS21835 694982c0d00c799ad9edc31323739fb9 68 Pfam PF10725 Protein of unknown function (DUF2517) 4 63 1.7E-36 T 28-03-2018 IPR019663 Uncharacterised protein YbfA AM348_RS15235 028238b799cf7380d8776b7653e907fa 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 1 76 4.0E-35 T 28-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS15235 028238b799cf7380d8776b7653e907fa 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 4.6E-38 T 28-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS15235 028238b799cf7380d8776b7653e907fa 76 Gene3D G3DSA:1.20.58.250 3 65 1.1E-30 T 28-03-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 AM348_RS15235 028238b799cf7380d8776b7653e907fa 76 SUPERFAMILY SSF46575 1 76 1.07E-34 T 28-03-2018 AM348_RS23275 e2b7ddc5722c76c10279b0e97105c619 360 Gene3D G3DSA:3.30.565.40 15 133 6.2E-5 T 28-03-2018 AM348_RS09590 53e261f377dd7e4ff8a547b02ae2561f 262 Pfam PF11392 Protein of unknown function (DUF2877) 138 245 3.6E-24 T 28-03-2018 IPR021530 Protein of unknown function DUF2877 AM348_RS18055 e01f869368e7bcbd8ac6270b2f701c9f 502 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 479 3.4E-133 T 28-03-2018 IPR010352 Protein of unknown function DUF945 AM348_RS19230 d011b3df06f790a41ff9888b4f890f78 395 Gene3D G3DSA:1.20.1250.20 202 392 6.5E-17 T 28-03-2018 AM348_RS19230 d011b3df06f790a41ff9888b4f890f78 395 TIGRFAM TIGR00896 CynX: cyanate transporter 15 368 4.1E-137 T 28-03-2018 IPR004747 Cyanate transport system protein GO:0016021 AM348_RS19230 d011b3df06f790a41ff9888b4f890f78 395 Gene3D G3DSA:1.20.1250.20 7 201 5.3E-17 T 28-03-2018 AM348_RS19230 d011b3df06f790a41ff9888b4f890f78 395 Pfam PF07690 Major Facilitator Superfamily 23 349 4.5E-21 T 28-03-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 AM348_RS19230 d011b3df06f790a41ff9888b4f890f78 395 SUPERFAMILY SSF103473 6 389 3.92E-43 T 28-03-2018 IPR020846 Major facilitator superfamily domain AM348_RS18820 f27fb136acd5275301a34a884748ad75 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 2 452 4.8E-156 T 28-03-2018 IPR003846 Uncharacterised protein family UPF0061 AM348_RS18820 f27fb136acd5275301a34a884748ad75 480 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 466 45.805 T 28-03-2018 IPR003846 Uncharacterised protein family UPF0061 AM348_RS01015 94f7e6c3cbd6d59549888abc82414720 173 Gene3D G3DSA:3.40.1000.10 26 173 1.1E-10 T 28-03-2018 AM348_RS11810 7098d3aecfa93408a8c2d2807ac73411 347 Pfam PF06674 Protein of unknown function (DUF1176) 25 347 6.4E-94 T 28-03-2018 IPR009560 Protein of unknown function DUF1176 AM348_RS05420 ff685c6c7ec460d6efe6df683da397b9 365 Pfam PF01103 Surface antigen 81 365 4.6E-12 T 28-03-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 AM348_RS05420 ff685c6c7ec460d6efe6df683da397b9 365 Gene3D G3DSA:2.40.160.50 31 365 5.8E-40 T 28-03-2018 AM348_RS22500 71505fdd6b6242321d0510d563892f56 217 Pfam PF00881 Nitroreductase family 8 193 5.2E-34 T 28-03-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 AM348_RS22500 71505fdd6b6242321d0510d563892f56 217 SUPERFAMILY SSF55469 1 216 9.82E-65 T 28-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM348_RS22500 71505fdd6b6242321d0510d563892f56 217 Gene3D G3DSA:3.40.109.10 1 217 4.8E-39 T 28-03-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 AM348_RS03585 6964e3d7059dc9dbd78d1374e017255a 122 Gene3D G3DSA:1.10.3830.10 7 119 3.4E-42 T 28-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM348_RS03585 6964e3d7059dc9dbd78d1374e017255a 122 Pfam PF01219 Prokaryotic diacylglycerol kinase 16 117 1.5E-34 T 28-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM348_RS03585 6964e3d7059dc9dbd78d1374e017255a 122 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 28-03-2018 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 AM348_RS05425 364f701ffdd221c5c7e93cf04d0b5298 375 Pfam PF13265 Protein of unknown function (DUF4056) 45 308 1.6E-124 T 28-03-2018 IPR025130 Protein of unknown function DUF4056 AM348_RS22810 79c3d13d22ff0e28578eb94451f93124 804 Pfam PF02687 FtsX-like permease family 274 364 2.9E-6 T 28-03-2018 IPR003838 ABC transporter permease protein domain GO:0016020 AM348_RS06175 e7bee45e5cfe0aef48fa1d70beed4fec 331 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 331 37.737 T 28-03-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 AM348_RS06175 e7bee45e5cfe0aef48fa1d70beed4fec 331 Pfam PF01757 Acyltransferase family 6 321 1.1E-32 T 28-03-2018 IPR002656 Acyltransferase 3 GO:0016747 AM348_RS18080 a6acb6e41421c097533d80fa8fc035fe 128 Gene3D G3DSA:2.60.120.380 19 127 9.7E-12 T 28-03-2018 AM348_RS02470 9e48d19e7409bdf15b8884046467fec9 169 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 154 1.1E-25 T 28-03-2018 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component AM348_RS07060 24df2b7dc8e9884b9e7ac9fe0d9cc278 179 Pfam PF05137 Fimbrial assembly protein (PilN) 98 166 1.5E-10 T 28-03-2018 IPR007813 Fimbrial assembly PilN AM348_RS18205 a575e58baa2081941280a95e940dcab7 671 Pfam PF04632 Fusaric acid resistance protein family 20 663 1.4E-170 T 28-03-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 AM348_RS00325 a6eab13ec5b9583e023cfbd9dd824574 477 Gene3D G3DSA:3.40.1350.10 316 462 6.4E-5 T 28-03-2018 AM348_RS19845 f34ed64879ca8859ef86b20e4ef7fbe4 173 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 3.0E-19 T 28-03-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD AM348_RS03785 cd600b39f743c25abf82047061cd6ef1 92 Gene3D G3DSA:1.10.260.40 34 90 8.2E-4 T 28-03-2018 AM348_RS03785 cd600b39f743c25abf82047061cd6ef1 92 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 3 90 5.9E-37 T 28-03-2018 IPR014057 Addiction module antidote protein, HI1420 AM348_RS03785 cd600b39f743c25abf82047061cd6ef1 92 SUPERFAMILY SSF47413 27 88 1.37E-7 T 28-03-2018 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 AM348_RS08385 e869f2c2fdf95b41f3f859139982d8bd 99 Pfam PF13997 YqjK-like protein 14 86 5.4E-26 T 28-03-2018 IPR025612 YqjK-like protein AM348_RS05690 c1df542122e86e7f4128d04b3215be18 100 PIRSF PIRSF029218 1 98 2.2E-22 T 28-03-2018 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 AM348_RS05690 c1df542122e86e7f4128d04b3215be18 100 Gene3D G3DSA:3.30.2310.20 1 93 7.8E-4 T 28-03-2018 AM348_RS05690 c1df542122e86e7f4128d04b3215be18 100 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 91 2.2E-17 T 28-03-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family AM348_RS16435 c94d1178a42dc4272c31f68fef6809eb 206 Gene3D G3DSA:3.90.870.10 1 206 2.3E-60 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS16435 c94d1178a42dc4272c31f68fef6809eb 206 Pfam PF01300 Telomere recombination 23 198 1.9E-45 T 28-03-2018 IPR006070 YrdC-like domain GO:0003725 AM348_RS16435 c94d1178a42dc4272c31f68fef6809eb 206 SUPERFAMILY SSF55821 1 204 7.02E-66 T 28-03-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain AM348_RS16435 c94d1178a42dc4272c31f68fef6809eb 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 204 3.4E-78 T 28-03-2018 IPR006070 YrdC-like domain GO:0003725 AM348_RS19245 48b13597b39aeaf6a594076d677442f2 82 Pfam PF03891 Domain of unknown function (DUF333) 30 76 8.2E-19 T 28-03-2018 IPR005590 Protein of unknown function DUF333 AM348_RS17090 e1bb8f32209493266d20e37ad70f84cd 41 Pfam PF10617 Protein of unknown function (DUF2474) 4 41 1.3E-16 T 28-03-2018 IPR018895 Protein of unknown function DUF2474 AM348_RS12450 4a40e9b7bfd0d96b18f5f8df4a1ea943 220 SUPERFAMILY SSF110997 140 217 1.31E-12 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS12450 4a40e9b7bfd0d96b18f5f8df4a1ea943 220 Pfam PF05036 Sporulation related domain 141 214 1.2E-10 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS12450 4a40e9b7bfd0d96b18f5f8df4a1ea943 220 Gene3D G3DSA:3.30.70.1070 138 217 2.1E-8 T 28-03-2018 IPR007730 Sporulation-related domain GO:0042834 AM348_RS12450 4a40e9b7bfd0d96b18f5f8df4a1ea943 220 Hamap MF_02022 Cell division protein DedD [dedD]. 10 219 24.247 T 28-03-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 AM348_RS21925 e4b6c0af121eedeca70937ef4075af9f 110 Pfam PF13982 YbfN-like lipoprotein 21 107 2.0E-47 T 28-03-2018 IPR025727 YbfN-like lipoprotein AM348_RS15060 e75de947986016ea4056939595972346 130 Pfam PF06366 Flagellar protein FlhE 28 130 4.4E-38 T 28-03-2018 IPR009420 Flagellar protein FlhE AM348_RS23040 d57fa0f1070fcdf01639d84945baf285 124 Pfam PF10757 Biofilm formation regulator YbaJ 1 116 1.5E-62 T 28-03-2018 IPR019693 Biofilm formation regulator YbaJ AM348_RS21445 7bdd1220a71b01784c03da107a2adc1a 49 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 48 1.2E-30 T 28-03-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 AM348_RS21445 7bdd1220a71b01784c03da107a2adc1a 49 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 46 19.566 T 28-03-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 AM348_RS01700 04d4fcaeff5fdcf3b12aa3e08477268f 453 PIRSF PIRSF004548 1 450 3.5E-175 T 28-03-2018 IPR010364 Uncharacterised protein family, inner membrane CreD AM348_RS01700 04d4fcaeff5fdcf3b12aa3e08477268f 453 Pfam PF06123 Inner membrane protein CreD 6 426 2.3E-141 T 28-03-2018 IPR010364 Uncharacterised protein family, inner membrane CreD AM348_RS15325 a5bd2ed9181aaf08add2d39aa8d4f381 94 Pfam PF13974 YebO-like protein 17 94 8.3E-32 T 28-03-2018 IPR025594 YebO-like protein AM348_RS02060 b8725bdbeb2cb31b9b2fa3e448ca529a 83 Pfam PF11823 Protein of unknown function (DUF3343) 4 51 4.6E-11 T 28-03-2018 IPR021778 Domain of unknown function DUF3343 AM348_RS17810 cc2d82706677f10098acbd4a2b1b58f1 67 Pfam PF14001 YdfZ protein 2 65 1.9E-34 T 28-03-2018 IPR017704 Putative selenium-binding protein YdfZ AM348_RS17810 cc2d82706677f10098acbd4a2b1b58f1 67 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 1 65 2.2E-37 T 28-03-2018 IPR017704 Putative selenium-binding protein YdfZ AM348_RS02245 39f0b1a35c51e3f280bebb19bb9a6bd1 287 Gene3D G3DSA:3.40.50.10620 5 163 3.0E-16 T 28-03-2018 AM348_RS23245 4bce7725c93664f30a397b25efe38ec8 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 92 4.2E-19 T 28-03-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 AM348_RS23245 4bce7725c93664f30a397b25efe38ec8 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 107 4.8E-38 T 28-03-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 AM348_RS23055 db12e44fa889e42f6aef811cd88fe6e0 156 Pfam PF10777 Inner membrane protein YlaC 1 152 1.0E-67 T 28-03-2018 IPR019713 Inner membrane protein YlaC AM348_RS18105 9ff2dfcef0dbf96f9e5a580bab7b6c18 146 Pfam PF10754 Protein of unknown function (DUF2569) 7 144 5.0E-41 T 28-03-2018 IPR019690 Protein of unknown function DUF2569 AM348_RS11830 6c17fe5366df909c1f6d2f24e5cd66d7 111 SUPERFAMILY SSF143414 39 107 8.5E-13 T 28-03-2018 AM348_RS11830 6c17fe5366df909c1f6d2f24e5cd66d7 111 SMART SM00877 39 111 2.8E-13 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS11830 6c17fe5366df909c1f6d2f24e5cd66d7 111 PIRSF PIRSF012296 1 111 1.1E-56 T 28-03-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 AM348_RS11830 6c17fe5366df909c1f6d2f24e5cd66d7 111 Pfam PF00936 BMC domain 40 103 1.5E-11 T 28-03-2018 IPR000249 Microcompartment protein, bacteria AM348_RS14300 bebef7056100fa3efda3f0435df2ed5d 138 Pfam PF14282 FlxA-like protein 29 111 5.3E-14 T 28-03-2018 IPR025577 FlxA-like protein AM348_RS14300 bebef7056100fa3efda3f0435df2ed5d 138 Gene3D G3DSA:1.20.120.330 18 121 1.6E-6 T 28-03-2018 AM348_RS15950 67549e200895070e91b95ab479658a35 215 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 5.8E-83 T 28-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM348_RS15950 67549e200895070e91b95ab479658a35 215 Pfam PF01914 MarC family integral membrane protein 9 210 1.6E-74 T 28-03-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 AM348_RS15565 47f0ca0e54ff2bd2ee3ba92b250d861f 84 Pfam PF04226 Transglycosylase associated protein 34 83 3.1E-14 T 28-03-2018 IPR007341 Transglycosylase-associated protein GO:0016021 AM348_RS17155 55efd87dda3d5ed855dac6b3db72cce2 57 Pfam PF10753 Toxin GhoT_OrtT 4 57 2.7E-27 T 28-03-2018 IPR019689 Toxin GhoT/OrtT AM348_RS06335 fb12c4b3d37c1509cee89e9ce39bee1e 55 Pfam PF13940 Toxin Ldr, type I toxin-antitoxin system 21 55 3.5E-22 T 28-03-2018 IPR025253 Type I toxin-antitoxin system, toxin Ldr AM348_RS01070 0d4d6ffc0613e04d6fef872bd58532d3 528 Pfam PF11737 Protein of unknown function (DUF3300) 71 339 1.1E-86 T 28-03-2018 IPR021728 Protein of unknown function DUF3300 AM348_RS12580 f92f0412ec162e2637d89d04aa2d9ac4 147 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 28 125 9.2E-31 T 28-03-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 AM348_RS12580 f92f0412ec162e2637d89d04aa2d9ac4 147 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 9 126 19.902 T 28-03-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 AM348_RS07070 4f15c94a4e811533669891f6effa591b 137 Pfam PF10748 Protein of unknown function (DUF2531) 4 136 8.0E-56 T 28-03-2018 IPR019684 HofP protein AM348_RS17055 5131b639ef0daefa38473cecca4fb3d1 224 Pfam PF11769 Protein of unknown function (DUF3313) 17 213 1.4E-57 T 28-03-2018 IPR021747 Protein of unknown function DUF3313 AM348_RS01075 1929595191eba5ddb4b7725ad39f7272 264 Pfam PF11453 Protein of unknown function (DUF2950) 21 262 8.3E-80 T 28-03-2018 IPR021556 Protein of unknown function DUF2950 AM348_RS13565 3625d52c186c7708ad1bcc4c5abf2526 316 Pfam PF04393 Protein of unknown function (DUF535) 34 311 5.8E-93 T 28-03-2018 IPR007488 Protein of unknown function DUF535 AM348_RS17930 755dbb44e52058592d40fa1123d02850 131 Hamap MF_00546 Acid shock protein [asr]. 1 131 17.25 T 28-03-2018 IPR023497 Acid shock protein AM348_RS03275 933191d81165eb65248741c273bd9a90 355 PIRSF PIRSF007313 1 355 1.5E-156 T 28-03-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 AM348_RS03275 933191d81165eb65248741c273bd9a90 355 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 350 9.7E-152 T 28-03-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 AM348_RS15245 4db2c12e552267d391aafa8be938541d 290 Pfam PF05425 Copper resistance protein D 186 283 2.1E-21 T 28-03-2018 IPR008457 Copper resistance protein D GO:0016021 AM348_RS10760 be5d79b227c901671b45c585ce72bc28 428 Pfam PF10082 Putative beta-barrel porin 2 36 399 2.1E-11 T 28-03-2018 IPR018759 Putative beta-barrel porin 2 AM348_RS14750 4db4e712605015645ad7256e494a7f7b 585 Pfam PF03354 Phage Terminase 112 563 7.6E-80 T 28-03-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type AM348_RS02215 4f18bd286fc1f30dd51a385ab3b22e57 259 Pfam PF13391 HNH endonuclease 161 214 3.7E-8 T 28-03-2018 IPR003615 HNH nuclease AM348_RS18015 2f8dd708d19545b85fac2415faebd8a9 263 Gene3D G3DSA:3.60.15.10 50 258 3.1E-20 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS18015 2f8dd708d19545b85fac2415faebd8a9 263 SUPERFAMILY SSF56281 53 239 1.96E-32 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS18015 2f8dd708d19545b85fac2415faebd8a9 263 SMART SM00849 72 241 1.8E-7 T 28-03-2018 IPR001279 Metallo-beta-lactamase AM348_RS09575 281726cdb4f5b789eb55f2f892730331 90 Pfam PF14542 GCN5-related N-acetyl-transferase 9 88 4.8E-22 T 28-03-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase AM348_RS09575 281726cdb4f5b789eb55f2f892730331 90 Gene3D G3DSA:3.40.630.30 4 90 5.8E-16 T 28-03-2018 AM348_RS09575 281726cdb4f5b789eb55f2f892730331 90 SUPERFAMILY SSF55729 5 88 2.57E-22 T 28-03-2018 IPR016181 Acyl-CoA N-acyltransferase AM348_RS18600 c856d3318157d7b10b353feef25a7b92 340 Gene3D G3DSA:1.20.1630.10 10 293 3.9E-42 T 28-03-2018 AM348_RS18600 c856d3318157d7b10b353feef25a7b92 340 Pfam PF03916 Polysulphide reductase, NrfD 10 290 6.8E-43 T 28-03-2018 IPR005614 NrfD family AM348_RS17085 6ca0b27e0f0543c4bf410ed036dfe079 76 ProDom PD057831 YNCJ PRECURSOR SIGNAL PERIPLASMIC STY1461 1 73 6.0E-22 T 28-03-2018 IPR020117 Uncharacterised protein family YncJ AM348_RS17085 6ca0b27e0f0543c4bf410ed036dfe079 76 Pfam PF10829 Protein of unknown function (DUF2554) 1 74 8.0E-33 T 28-03-2018 IPR020117 Uncharacterised protein family YncJ AM348_RS10490 73c7e9bcda5eaad78121f65d392e5a05 165 Gene3D G3DSA:3.90.950.20 1 165 3.3E-60 T 28-03-2018 AM348_RS10490 73c7e9bcda5eaad78121f65d392e5a05 165 Pfam PF02464 Competence-damaged protein 8 160 6.5E-60 T 28-03-2018 IPR008136 CinA, C-terminal AM348_RS10490 73c7e9bcda5eaad78121f65d392e5a05 165 SUPERFAMILY SSF142433 3 161 1.44E-58 T 28-03-2018 IPR008136 CinA, C-terminal AM348_RS10490 73c7e9bcda5eaad78121f65d392e5a05 165 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 158 1.8E-61 T 28-03-2018 IPR008136 CinA, C-terminal AM348_RS17670 70669618d1cb197a6cb6124398bbe122 125 Gene3D G3DSA:3.90.1590.10 2 125 1.2E-31 T 28-03-2018 AM348_RS17670 70669618d1cb197a6cb6124398bbe122 125 SUPERFAMILY SSF51316 1 122 1.88E-32 T 28-03-2018 IPR011057 Mss4-like AM348_RS17670 70669618d1cb197a6cb6124398bbe122 125 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 113 1.2E-14 T 28-03-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 AM348_RS18975 f62ff30727876224e3f5b54ea15b1b4c 113 Gene3D G3DSA:3.30.1450.10 28 103 1.4E-5 T 28-03-2018 AM348_RS18975 f62ff30727876224e3f5b54ea15b1b4c 113 Pfam PF04355 SmpA / OmlA family 33 96 4.2E-11 T 28-03-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 AM348_RS09640 c9c3aa4d1015cb5e7e970a00c9d1374b 409 Pfam PF03222 Tryptophan/tyrosine permease family 16 380 7.3E-10 T 28-03-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 AM348_RS06705 b65afaa3e1fbb9bb42c695c3fde08f61 208 Pfam PF07947 YhhN family 26 206 3.6E-40 T 28-03-2018 IPR012506 YhhN-like GO:0016021 AM348_RS16170 de0d453288ba6aa5469b621a54ed9e24 92 Pfam PF16080 Bacteriophage holin family HP1 47 79 6.4E-14 T 28-03-2018 IPR032118 Bacteriophage holin HP1 family AM348_RS07805 ade22539e892a1e948df457023c78cb9 132 Pfam PF06295 Protein of unknown function (DUF1043) 6 126 8.6E-47 T 28-03-2018 IPR009386 Protein of unknown function DUF1043 AM348_RS07805 ade22539e892a1e948df457023c78cb9 132 PIRSF PIRSF006318 1 132 4.9E-50 T 28-03-2018 IPR009386 Protein of unknown function DUF1043 AM348_RS11715 01b68c427a5879bd5a4459b0f0971882 219 Pfam PF07670 Nucleoside recognition 79 190 1.2E-6 T 28-03-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 AM348_RS12455 495dfa1f51cc8b594d7cec362cb98ef3 162 Pfam PF02674 Colicin V production protein 4 141 1.2E-35 T 28-03-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 AM348_RS15320 dabbdca00f6e2b7cce62f94d9bcb868d 47 Pfam PF13998 MgrB protein 19 47 2.9E-17 T 28-03-2018 IPR020907 PhoP/PhoQ regulator MgrB AM348_RS15320 dabbdca00f6e2b7cce62f94d9bcb868d 47 Hamap MF_01596 PhoP/PhoQ regulator MgrB [mgrB]. 1 47 20.167 T 28-03-2018 IPR020907 PhoP/PhoQ regulator MgrB AM348_RS05195 1e758ef22a9d8a894766dbe9bb7b200a 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 1.5E-49 T 28-03-2018 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 AM348_RS05195 1e758ef22a9d8a894766dbe9bb7b200a 321 Gene3D G3DSA:1.10.3470.10 33 320 3.8E-37 T 28-03-2018 IPR035568 ABC transporter, FecCD/TroCD-like AM348_RS23005 83cb5307ecd03167d1eafd4f535311f7 171 Pfam PF07445 Primosomal replication protein priC 4 168 3.1E-46 T 28-03-2018 IPR010890 Primosomal replication PriB/PriC AM348_RS15530 eaaa7124ea2181819fa0124e040d755f 510 Pfam PF04293 SpoVR like protein 19 450 8.8E-177 T 28-03-2018 IPR007390 Sporulation stage V, protein R AM348_RS19240 e25b001bb305179dc2392ea4f818e09c 115 Pfam PF04343 Protein of unknown function, DUF488 5 112 3.3E-32 T 28-03-2018 IPR007438 Protein of unknown function DUF488 AM348_RS14355 8abd1f71b1ca1e65ed9869dd363b3811 303 Pfam PF05661 Protein of unknown function (DUF808) 4 290 8.7E-115 T 28-03-2018 IPR008526 Inner membrane protein YedI AM348_RS14355 8abd1f71b1ca1e65ed9869dd363b3811 303 PIRSF PIRSF016660 1 303 3.8E-127 T 28-03-2018 IPR008526 Inner membrane protein YedI AM348_RS14145 e3e32885215523829969f2d949fcdea7 93 Pfam PF02553 Cobalt transport protein component CbiN 5 69 2.3E-28 T 28-03-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 AM348_RS14145 e3e32885215523829969f2d949fcdea7 93 Hamap MF_00330 Cobalt transport protein CbiN [cbiN]. 1 93 44.042 T 28-03-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 AM348_RS14145 e3e32885215523829969f2d949fcdea7 93 TIGRFAM TIGR01165 cbiN: cobalt transport protein 1 85 5.0E-38 T 28-03-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 AM348_RS05680 ae37549d2dbf6ab1b860987fe38feee2 205 ProDom PD116027 TRANSCRIPTION DNA-BINDING REGULATION RMBA YQEH ORF3-QACEDELTA1 FUSION CYTOPLASMIC ECS3703 TRANSMEMBRANE 1 205 1.0E-83 T 28-03-2018 AM348_RS20425 ccd137d35666638bf80db360682d2b80 249 Pfam PF12787 EcsC protein family 82 242 1.6E-15 T 28-03-2018 IPR024787 EcsC protein AM348_RS02805 2a58e8b96709b584b918c4a7a913926f 465 Pfam PF03611 PTS system sugar-specific permease component 15 410 3.9E-123 T 28-03-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 AM348_RS17635 45bd84e0936bffc227500f544150882e 312 Gene3D G3DSA:2.40.160.20 36 310 2.9E-5 T 28-03-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 AM348_RS16940 d3edcbc70248d0208ea50f024ac0e776 134 Gene3D G3DSA:1.20.120.330 5 127 8.7E-11 T 28-03-2018 AM348_RS16185 e5aad40975f985517f0386edb90b81a0 71 Pfam PF13619 KTSC domain 7 63 2.7E-25 T 28-03-2018 IPR025309 KTSC domain AM348_RS21695 fb0e22233ff3e0f23f945d4c6dc2fffe 217 Gene3D G3DSA:3.40.50.1860 110 201 1.3E-4 T 28-03-2018 AM348_RS21695 fb0e22233ff3e0f23f945d4c6dc2fffe 217 Gene3D G3DSA:3.40.50.1860 4 109 5.2E-7 T 28-03-2018 AM348_RS00315 972bec10bc223c7ad2c70623a4066180 483 Pfam PF03553 Na+/H+ antiporter family 163 464 1.2E-53 T 28-03-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 AM348_RS00315 972bec10bc223c7ad2c70623a4066180 483 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 14 468 5.2E-155 T 28-03-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 AM348_RS14655 7047588294c94c71846b8974c8f6ae29 68 Pfam PF13973 Domain of unknown function (DUF4222) 3 53 1.3E-19 T 28-03-2018 IPR025317 Protein of unknown function DUF4222 AM348_RS18895 5bde7f8d6c1ca1adaa92f325b4270374 252 Pfam PF04338 Protein of unknown function, DUF481 48 251 1.6E-56 T 28-03-2018 IPR007433 Protein of unknown function DUF481 AM348_RS08025 0f5669de54d410f149f435d3c53659de 321 Pfam PF00892 EamA-like transporter family 7 142 2.0E-27 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS08025 0f5669de54d410f149f435d3c53659de 321 Pfam PF00892 EamA-like transporter family 159 291 1.2E-17 T 28-03-2018 IPR000620 EamA domain GO:0016020|GO:0016021 AM348_RS08025 0f5669de54d410f149f435d3c53659de 321 SUPERFAMILY SSF103481 41 143 1.96E-12 T 28-03-2018 AM348_RS17900 92f3fee681efeb1ae979ab9bf5694653 228 Pfam PF02517 CAAX protease self-immunity 122 213 7.6E-15 T 28-03-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 AM348_RS19440 1b2dbe0f8f347f84e6d049161eeeef71 168 Pfam PF04191 Phospholipid methyltransferase 70 152 4.9E-9 T 28-03-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 AM348_RS16935 55610ba989691669b56d3300f085a554 252 Gene3D G3DSA:1.25.40.10 11 185 0.0011 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS16150 d8b66b1a9fa3e812bebd6c50b5bf71c5 45 ProDom PD026569 PROPHAGE GIFSY-1 3'REGION ORF45 C1558 RUSA LAMBDOID YLCG DLP12 3 44 1.0E-10 T 28-03-2018 AM348_RS22695 617f9cd59c96b126d948f7fccd23bbe0 240 ProDom PD117946 FIMBRIAE Y REGULATORY FIMBRIA 1 235 2.0E-101 T 28-03-2018 AM348_RS02370 32c830c529ff5207b1635319417431ba 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 5.6E-72 T 28-03-2018 IPR005495 Permease LptG/LptF-related GO:0016021 AM348_RS02370 32c830c529ff5207b1635319417431ba 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 2.8E-115 T 28-03-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 AM348_RS20215 0062579c7a8f36eb8737cd7520b52eb3 251 Pfam PF01925 Sulfite exporter TauE/SafE 16 246 2.1E-28 T 28-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM348_RS06475 19dd8832210361720e0bda7dd99ade4b 499 Pfam PF01384 Phosphate transporter family 30 488 2.4E-85 T 28-03-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 AM348_RS14265 9406ac1ff8af146bf6a78953c8c97b61 363 Pfam PF03773 Predicted permease 17 360 1.1E-54 T 28-03-2018 IPR005524 Predicted permease DUF318 AM348_RS22565 70129bd88b732a069413dc2fdbdf6a45 231 Gene3D G3DSA:2.40.10.220 104 224 6.2E-10 T 28-03-2018 AM348_RS14240 17a05c3e15382ca51d76078f141d0735 120 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 120 3.2E-48 T 28-03-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 AM348_RS19505 e31624c898e58c29c87498bfbb4f6d97 179 Pfam PF05433 Glycine zipper 2TM domain 73 113 3.3E-11 T 28-03-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 AM348_RS16920 5c3a5b5eb7fda057f1f0007ae50f4ed1 192 Pfam PF07105 Protein of unknown function (DUF1367) 5 190 7.3E-68 T 28-03-2018 IPR009797 Protein of unknown function DUF1367 AM348_RS02655 0aef09b7e6bba5660f5aa9ac6f7b91eb 1258 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 922 1258 3.3E-68 T 28-03-2018 IPR007452 Translocation and assembly module TamB AM348_RS22070 41ff9e897856c20faa31886a574873da 160 Pfam PF07295 Zinc-ribbon containing domain 14 157 6.8E-53 T 28-03-2018 IPR009912 Zinc-ribbon containing domain AM348_RS03055 c210978b4103cb7db4686d29bddf8071 158 Pfam PF04186 FxsA cytoplasmic membrane protein 8 110 3.3E-33 T 28-03-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 AM348_RS22855 6819bb2bd716a50268f97c4ced44bb73 714 Gene3D G3DSA:1.25.40.10 153 514 3.7E-7 T 28-03-2018 IPR011990 Tetratricopeptide-like helical domain GO:0005515 AM348_RS15670 ed1dabfe7f49e1a6a2935012f19a0a7e 88 Pfam PF10798 Biofilm development protein YmgB/AriR 30 87 7.3E-22 T 28-03-2018 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 AM348_RS00635 407c564c6b447edd16b4c78ed0a0e90a 134 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 133 35.597 T 28-03-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 AM348_RS00635 407c564c6b447edd16b4c78ed0a0e90a 134 Pfam PF16358 RcsF lipoprotein 28 132 1.8E-49 T 28-03-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 AM348_RS09625 25884ce8a1c0f95938c36faf8f49fece 90 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 6.2E-20 T 28-03-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 AM348_RS17025 bbeab0f2f03adb304c6ef836b8cb77df 74 Pfam PF04325 Protein of unknown function (DUF465) 19 66 2.9E-13 T 28-03-2018 IPR007420 Protein of unknown function DUF465 AM348_RS20940 5e3bf0ac3c2c8ef8adbf9452df414663 158 Pfam PF10722 Putative bacterial sensory transduction regulator 8 131 4.8E-18 T 28-03-2018 IPR019660 Putative sensory transduction regulator YbjN AM348_RS15850 4724b1b6b9fe7d76ae976d924d369f2c 467 Pfam PF11924 Inverse autotransporter, beta-domain 69 347 1.8E-101 T 28-03-2018 IPR024519 Inverse autotransporter, beta-domain AM348_RS11060 9292b2576d14aa32d484646780966103 263 Pfam PF01578 Cytochrome C assembly protein 36 261 2.1E-44 T 28-03-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 AM348_RS12385 ddfda6283e2130d5604239ceea5afc4b 269 Pfam PF01925 Sulfite exporter TauE/SafE 18 253 1.6E-45 T 28-03-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 AM348_RS03605 753b2a21ab7cefe3088351d42abdb4fa 308 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 76 209 1.3E-49 T 28-03-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 AM348_RS18685 549dd9133c679b3ce88712cfbc088890 89 Pfam PF15930 Domain of unknown function 28 89 6.3E-40 T 28-03-2018 IPR031830 Uncharacterised protein YdiH AM348_RS10895 1be07a49bcba5fe1617f78c4900a0d98 210 Pfam PF10938 YfdX protein 54 205 9.5E-45 T 28-03-2018 IPR021236 Uncharacterised protein family YfdX AM348_RS20955 315fb746365dd7a6ce0fc696e933b6fa 96 Pfam PF07214 Protein of unknown function (DUF1418) 1 93 7.9E-39 T 28-03-2018 IPR010815 Protein of unknown function DUF1418 AM348_RS23530 89269c9ae6a72cca9a609ca2cc8e560c 80 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 1 58 2.1E-14 T 28-03-2018 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 AM348_RS00380 235aac28f11dc67b8fb2dffc6e2035b3 830 Pfam PF15976 CS1-pili formation C-terminal 730 821 6.0E-23 T 28-03-2018 IPR031917 Pilus assembly protein, C-terminal domain AM348_RS00380 235aac28f11dc67b8fb2dffc6e2035b3 830 Pfam PF16967 E-set like domain 273 340 7.8E-23 T 28-03-2018 IPR032636 Pilus assembly protein, E-set like domain AM348_RS14455 50ae7a0d0dc790c672ed8835fbc2adc2 421 Pfam PF04143 Sulphur transport 18 180 1.8E-26 T 28-03-2018 IPR007272 Sulphur transport domain AM348_RS14455 50ae7a0d0dc790c672ed8835fbc2adc2 421 Pfam PF04143 Sulphur transport 257 406 2.4E-23 T 28-03-2018 IPR007272 Sulphur transport domain AM348_RS03435 5525b9e7d0a84497d42332110e941594 229 Pfam PF04172 LrgB-like family 14 226 4.1E-67 T 28-03-2018 IPR007300 CidB/LrgB family AM348_RS02145 39766a4d323cdd35eb3ddc9c17063ea0 533 PIRSF PIRSF006060 6 468 1.2E-74 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS02145 39766a4d323cdd35eb3ddc9c17063ea0 533 PIRSF PIRSF006060 460 493 15.0 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS02145 39766a4d323cdd35eb3ddc9c17063ea0 533 Pfam PF13520 Amino acid permease 24 431 1.4E-41 T 28-03-2018 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 AM348_RS08920 1b413f4ccefc8482c57b2f4d12cc2c55 219 Pfam PF09335 SNARE associated Golgi protein 48 173 2.3E-18 T 28-03-2018 IPR032816 SNARE associated Golgi protein AM348_RS16145 c68fdc7680f152826bbf52ddd46ce6d6 202 Pfam PF05766 Bacteriophage Lambda NinG protein 1 193 1.6E-71 T 28-03-2018 IPR008713 Bacteriophage lambda NinG AM348_RS11935 a89d643761b0dcfc6aff4c81e8b877d8 149 Pfam PF11143 Protein of unknown function (DUF2919) 6 145 1.4E-46 T 28-03-2018 IPR021318 Protein of unknown function DUF2919 AM348_RS04920 33443ecb94ead3a6f75c70b0a9d47d83 67 Pfam PF13627 Prokaryotic lipoprotein-attachment site 8 29 1.2E-9 T 28-03-2018 IPR032831 Prokaryotic lipoprotein-attachment site