CU079_RS00015	SM00382	ATPases associated with a variety of cellular activities
CU079_RS00075	SM00091	PAS domain
CU079_RS00075	SM00382	ATPases associated with a variety of cellular activities
CU079_RS00090	SM01120	CU079_RS00090
CU079_RS00100	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS00115	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CU079_RS00115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS00130	SM00354	helix_turn _helix lactose operon repressor
CU079_RS00135	SM01038	Beta galactosidase small chain
CU079_RS00200	SM00858	CU079_RS00200
CU079_RS00220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS00220	SM00895	CU079_RS00220
CU079_RS00370	SM00858	CU079_RS00370
CU079_RS00375	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS00375	SM01134	CU079_RS00375
CU079_RS00465	SM00749	bacterial OsmY and nodulation domain
CU079_RS00470	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU079_RS00485	SM00465	GIY-YIG type nucleases (URI domain)
CU079_RS00555	SM00487	DEAD-like helicases superfamily
CU079_RS00555	SM00490	helicase superfamily c-terminal domain
CU079_RS00560	SM00028	Tetratricopeptide repeats
CU079_RS00565	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS00565	SM00322	K homology RNA-binding domain
CU079_RS00570	SM01387	CU079_RS00570
CU079_RS00590	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS00645	SM00382	ATPases associated with a variety of cellular activities
CU079_RS00655	SM01103	CU079_RS00655
CU079_RS00740	SM00382	ATPases associated with a variety of cellular activities
CU079_RS00770	SM00382	ATPases associated with a variety of cellular activities
CU079_RS00810	SM00073	Histidine Phosphotransfer domain
CU079_RS00810	SM00091	PAS domain
CU079_RS00810	SM00387	Histidine kinase-like ATPases
CU079_RS00810	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS00810	SM00448	cheY-homologous receiver domain
CU079_RS00815	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS00865	SM01130	CU079_RS00865
CU079_RS00870	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS00870	SM00895	CU079_RS00870
CU079_RS00915	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU079_RS00920	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU079_RS00985	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS01015	SM00052	Putative diguanylate phosphodiesterase
CU079_RS01015	SM00267	diguanylate cyclase
CU079_RS01020	SM00829	Enoylreductase
CU079_RS01045	SM00878	Biotin carboxylase C-terminal domain
CU079_RS01110	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS01125	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01235	SM00422	helix_turn_helix, mercury resistance
CU079_RS01250	SM00662	RNA polymerases D
CU079_RS01255	SM00363	S4 RNA-binding domain
CU079_RS01255	SM01390	CU079_RS01255
CU079_RS01320	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CU079_RS01325	SM01374	CU079_RS01325
CU079_RS01345	SM00322	K homology RNA-binding domain
CU079_RS01360	SM01382	CU079_RS01360
CU079_RS01360	SM01383	CU079_RS01360
CU079_RS01380	SM01403	CU079_RS01380
CU079_RS01410	SM00838	Elongation factor G C-terminus
CU079_RS01410	SM00889	Elongation factor G, domain IV
CU079_RS01480	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01530	SM00100	Cyclic nucleotide-monophosphate binding domain
CU079_RS01530	SM00419	helix_turn_helix, cAMP Regulatory protein
CU079_RS01670	SM00965	Secretin and TonB N terminus short domain
CU079_RS01715	SM00363	S4 RNA-binding domain
CU079_RS01730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS01730	SM00387	Histidine kinase-like ATPases
CU079_RS01730	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS01735	SM00448	cheY-homologous receiver domain
CU079_RS01735	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS01745	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS01745	SM00732	Likely ribonuclease with RNase H fold.
CU079_RS01750	SM00899	CU079_RS01750
CU079_RS01800	SM00421	helix_turn_helix, Lux Regulon
CU079_RS01805	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS01805	SM01134	CU079_RS01805
CU079_RS01815	SM00450	Rhodanese Homology Domain
CU079_RS01840	SM00642	Alpha-amylase domain
CU079_RS01845	SM00642	Alpha-amylase domain
CU079_RS01850	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU079_RS01875	SM00354	helix_turn _helix lactose operon repressor
CU079_RS01915	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01940	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01945	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01990	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01995	SM00382	ATPases associated with a variety of cellular activities
CU079_RS01995	SM00962	SRP54-type protein, GTPase domain
CU079_RS01995	SM00963	SRP54-type protein, helical bundle domain
CU079_RS02075	SM00382	ATPases associated with a variety of cellular activities
CU079_RS02085	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS02130	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS02140	SM00903	Flavin reductase like domain
CU079_RS02200	SM01235	CU079_RS02200
CU079_RS02225	SM00421	helix_turn_helix, Lux Regulon
CU079_RS02230	SM00052	Putative diguanylate phosphodiesterase
CU079_RS02235	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS02235	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS02235	SM01358	CU079_RS02235
CU079_RS02240	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS02245	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS02280	SM00052	Putative diguanylate phosphodiesterase
CU079_RS02310	SM00052	Putative diguanylate phosphodiesterase
CU079_RS02310	SM00267	diguanylate cyclase
CU079_RS02330	SM00382	ATPases associated with a variety of cellular activities
CU079_RS02335	SM00382	ATPases associated with a variety of cellular activities
CU079_RS02340	SM00382	ATPases associated with a variety of cellular activities
CU079_RS02425	SM00354	helix_turn _helix lactose operon repressor
CU079_RS02460	SM00357	Cold shock protein domain
CU079_RS02510	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS02515	SM00047	Lysozyme subfamily 2
CU079_RS02525	SM00642	Alpha-amylase domain
CU079_RS02545	SM00346	helix_turn_helix isocitrate lyase regulation
CU079_RS02575	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CU079_RS02585	SM01007	Class II Aldolase and Adducin N-terminal domain
CU079_RS02590	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS02700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS02700	SM00895	CU079_RS02700
CU079_RS02720	SM00971	Serine acetyltransferase, N-terminal
CU079_RS02740	SM00450	Rhodanese Homology Domain
CU079_RS02770	SM00829	Enoylreductase
CU079_RS02845	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CU079_RS02845	SM01232	CU079_RS02845
CU079_RS02910	SM00532	Ligase N family
CU079_RS02915	SM00072	Guanylate kinase homologues.
CU079_RS02920	SM01409	CU079_RS02920
CU079_RS02925	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU079_RS02925	SM00954	Region found in RelA / SpoT proteins
CU079_RS02935	SM00487	DEAD-like helicases superfamily
CU079_RS02935	SM00490	helicase superfamily c-terminal domain
CU079_RS03010	SM00869	Autotransporter beta-domain
CU079_RS03020	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS03040	SM00829	Enoylreductase
CU079_RS03095	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03125	SM00346	helix_turn_helix isocitrate lyase regulation
CU079_RS03130	SM01130	CU079_RS03130
CU079_RS03135	SM00858	CU079_RS03135
CU079_RS03155	SM00387	Histidine kinase-like ATPases
CU079_RS03160	SM00421	helix_turn_helix, Lux Regulon
CU079_RS03160	SM00448	cheY-homologous receiver domain
CU079_RS03250	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS03295	SM00387	Histidine kinase-like ATPases
CU079_RS03295	SM00433	TopoisomeraseII
CU079_RS03305	SM00480	DNA polymerase III beta subunit
CU079_RS03310	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03310	SM00760	Bacterial dnaA protein helix-turn-helix domain
CU079_RS03330	SM01234	CU079_RS03330
CU079_RS03380	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03420	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03470	SM01228	CU079_RS03470
CU079_RS03480	SM00344	helix_turn_helix ASNC type
CU079_RS03490	SM00327	von Willebrand factor (vWF) type A domain
CU079_RS03495	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03510	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03530	SM00354	helix_turn _helix lactose operon repressor
CU079_RS03540	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS03540	SM00895	CU079_RS03540
CU079_RS03645	SM00100	Cyclic nucleotide-monophosphate binding domain
CU079_RS03675	SM00487	DEAD-like helicases superfamily
CU079_RS03675	SM00490	helicase superfamily c-terminal domain
CU079_RS03690	SM00357	Cold shock protein domain
CU079_RS03690	SM00382	ATPases associated with a variety of cellular activities
CU079_RS03690	SM00959	Rho termination factor, N-terminal domain
CU079_RS03715	SM00984	UDP binding domain
CU079_RS03810	SM01219	CU079_RS03810
CU079_RS03865	SM00341	Helicase and RNase D C-terminal
CU079_RS03865	SM00487	DEAD-like helicases superfamily
CU079_RS03865	SM00490	helicase superfamily c-terminal domain
CU079_RS03865	SM00956	CU079_RS03865
CU079_RS03960	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CU079_RS03980	SM00354	helix_turn _helix lactose operon repressor
CU079_RS04070	SM00563	Phosphate acyltransferases
CU079_RS04075	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CU079_RS04075	SM00474	3'-5' exonuclease
CU079_RS04075	SM00475	5'-3' exonuclease
CU079_RS04075	SM00482	DNA polymerase A domain
CU079_RS04095	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS04105	SM00382	ATPases associated with a variety of cellular activities
CU079_RS04105	SM00448	cheY-homologous receiver domain
CU079_RS04110	SM00091	PAS domain
CU079_RS04110	SM00387	Histidine kinase-like ATPases
CU079_RS04110	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS04120	SM01230	CU079_RS04120
CU079_RS04170	SM01133	CU079_RS04170
CU079_RS04185	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS04185	SM01134	CU079_RS04185
CU079_RS04230	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS04305	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS04320	SM01007	Class II Aldolase and Adducin N-terminal domain
CU079_RS04335	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS04340	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS04365	SM01130	CU079_RS04365
CU079_RS04375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS04375	SM00866	CU079_RS04375
CU079_RS04390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS04390	SM00387	Histidine kinase-like ATPases
CU079_RS04390	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS04395	SM00448	cheY-homologous receiver domain
CU079_RS04395	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS04480	SM00822	CU079_RS04480
CU079_RS04495	SM00382	ATPases associated with a variety of cellular activities
CU079_RS04495	SM01086	C-terminal, D2-small domain, of ClpB protein
CU079_RS04515	SM00354	helix_turn _helix lactose operon repressor
CU079_RS04520	SM00487	DEAD-like helicases superfamily
CU079_RS04520	SM00490	helicase superfamily c-terminal domain
CU079_RS04610	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS04610	SM01134	CU079_RS04610
CU079_RS04625	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS04650	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU079_RS04775	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CU079_RS04775	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CU079_RS04780	SM00649	Ribosomal protein L11/L12
CU079_RS04810	SM00663	RNA polymerase I subunit A N-terminus
CU079_RS04825	SM00357	Cold shock protein domain
CU079_RS04830	SM00876	Biotin and Thiamin Synthesis associated domain
CU079_RS04885	SM00411	bacterial (prokaryotic) histone like domain
CU079_RS04900	SM00387	Histidine kinase-like ATPases
CU079_RS04900	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS04905	SM00382	ATPases associated with a variety of cellular activities
CU079_RS04905	SM00448	cheY-homologous receiver domain
CU079_RS04910	SM01209	CU079_RS04910
CU079_RS04910	SM01210	CU079_RS04910
CU079_RS04915	SM00798	AICARFT/IMPCHase bienzyme
CU079_RS04915	SM00851	MGS-like domain
CU079_RS04965	SM00346	helix_turn_helix isocitrate lyase regulation
CU079_RS04970	SM01018	B12 binding domain
CU079_RS05005	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS05010	SM00873	B3/4 domain
CU079_RS05015	SM01130	CU079_RS05015
CU079_RS05075	SM00822	CU079_RS05075
CU079_RS05085	SM00363	S4 RNA-binding domain
CU079_RS05095	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS05095	SM01134	CU079_RS05095
CU079_RS05120	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05125	SM00244	prohibitin homologues
CU079_RS05210	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05235	SM00563	Phosphate acyltransferases
CU079_RS05285	SM00829	Enoylreductase
CU079_RS05290	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05295	SM01005	Alanine racemase, C-terminal domain
CU079_RS05335	SM00052	Putative diguanylate phosphodiesterase
CU079_RS05340	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS05345	SM00422	helix_turn_helix, mercury resistance
CU079_RS05440	SM00028	Tetratricopeptide repeats
CU079_RS05450	SM00671	Sel1-like repeats.
CU079_RS05460	SM00448	cheY-homologous receiver domain
CU079_RS05460	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS05525	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS05535	SM00387	Histidine kinase-like ATPases
CU079_RS05535	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS05535	SM00448	cheY-homologous receiver domain
CU079_RS05550	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS05565	SM00072	Guanylate kinase homologues.
CU079_RS05575	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05580	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS05605	SM00866	CU079_RS05605
CU079_RS05620	SM00382	ATPases associated with a variety of cellular activities
CU079_RS05665	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS05665	SM00387	Histidine kinase-like ATPases
CU079_RS05665	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS05670	SM00448	cheY-homologous receiver domain
CU079_RS05670	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS05685	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS05695	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS05730	SM00448	cheY-homologous receiver domain
CU079_RS05735	SM00387	Histidine kinase-like ATPases
CU079_RS05810	SM00883	Chaperonin 10 Kd subunit
CU079_RS05845	SM00841	Elongation factor P, C-terminal
CU079_RS05845	SM01185	CU079_RS05845
CU079_RS05860	SM00421	helix_turn_helix, Lux Regulon
CU079_RS05930	SM00479	CU079_RS05930
CU079_RS05970	SM00646	CU079_RS05970
CU079_RS05975	SM00853	MutL C terminal dimerisation domain
CU079_RS05975	SM01340	CU079_RS05975
CU079_RS05995	SM00244	prohibitin homologues
CU079_RS06000	SM00244	prohibitin homologues
CU079_RS06010	SM00788	Adenylosuccinate synthetase
CU079_RS06025	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS06025	SM00357	Cold shock protein domain
CU079_RS06025	SM00955	CU079_RS06025
CU079_RS06030	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CU079_RS06085	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS06085	SM01134	CU079_RS06085
CU079_RS06110	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CU079_RS06120	SM01007	Class II Aldolase and Adducin N-terminal domain
CU079_RS06185	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS06185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS06185	SM00319	Homologues of the ligand binding domain of Tar
CU079_RS06195	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS06235	SM01091	Transporter associated domain
CU079_RS06270	SM00354	helix_turn _helix lactose operon repressor
CU079_RS06315	SM00382	ATPases associated with a variety of cellular activities
CU079_RS06330	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS06330	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS06465	SM00382	ATPases associated with a variety of cellular activities
CU079_RS06495	SM00642	Alpha-amylase domain
CU079_RS06505	SM00354	helix_turn _helix lactose operon repressor
CU079_RS06515	SM00831	Cation transporter/ATPase, N-terminus
CU079_RS06650	SM00354	helix_turn _helix lactose operon repressor
CU079_RS06675	SM00829	Enoylreductase
CU079_RS06720	SM00487	DEAD-like helicases superfamily
CU079_RS06890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS06890	SM00895	CU079_RS06890
CU079_RS06965	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS06980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS06990	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS07015	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CU079_RS07035	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS07035	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS07035	SM00319	Homologues of the ligand binding domain of Tar
CU079_RS07050	SM00895	CU079_RS07050
CU079_RS07055	SM00829	Enoylreductase
CU079_RS07075	SM00382	ATPases associated with a variety of cellular activities
CU079_RS07095	SM00421	helix_turn_helix, Lux Regulon
CU079_RS07100	SM00421	helix_turn_helix, Lux Regulon
CU079_RS07120	SM00267	diguanylate cyclase
CU079_RS07170	SM00749	bacterial OsmY and nodulation domain
CU079_RS07200	SM01133	CU079_RS07200
CU079_RS07205	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CU079_RS07235	SM00382	ATPases associated with a variety of cellular activities
CU079_RS07240	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS07245	SM00382	ATPases associated with a variety of cellular activities
CU079_RS07270	SM00855	Phosphoglycerate mutase family
CU079_RS07275	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS07275	SM00871	Bacterial transcription activator, effector binding domain
CU079_RS07285	SM00448	cheY-homologous receiver domain
CU079_RS07285	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS07290	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS07290	SM00387	Histidine kinase-like ATPases
CU079_RS07290	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS07300	SM00448	cheY-homologous receiver domain
CU079_RS07300	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS07355	SM00852	Probable molybdopterin binding domain
CU079_RS07385	SM00271	DnaJ molecular chaperone homology domain
CU079_RS07400	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS07410	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS07440	SM00904	Riboflavin kinase
CU079_RS07505	SM00354	helix_turn _helix lactose operon repressor
CU079_RS07515	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CU079_RS07520	SM00851	MGS-like domain
CU079_RS07520	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CU079_RS07560	SM00893	Electron transfer flavoprotein domain
CU079_RS07565	SM00893	Electron transfer flavoprotein domain
CU079_RS07620	SM00650	Ribosomal RNA adenine dimethylases
CU079_RS07640	SM00271	DnaJ molecular chaperone homology domain
CU079_RS07650	SM00487	DEAD-like helicases superfamily
CU079_RS07650	SM00490	helicase superfamily c-terminal domain
CU079_RS07655	SM00486	DNA polymerase type-B family
CU079_RS07670	SM01007	Class II Aldolase and Adducin N-terminal domain
CU079_RS07685	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS07695	SM00382	ATPases associated with a variety of cellular activities
CU079_RS07735	SM01329	CU079_RS07735
CU079_RS07740	SM00917	LeuA allosteric (dimerisation) domain
CU079_RS07765	SM00354	helix_turn _helix lactose operon repressor
CU079_RS07840	SM00842	Cell division protein FtsA
CU079_RS07845	SM00864	Tubulin/FtsZ family, GTPase domain
CU079_RS07845	SM00865	Tubulin/FtsZ family, C-terminal domain
CU079_RS07865	SM00957	SecA DEAD-like domain
CU079_RS07865	SM00958	SecA preprotein cross-linking domain
CU079_RS07890	SM01240	CU079_RS07890
CU079_RS07915	SM00644	CU079_RS07915
CU079_RS07940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS07940	SM00895	CU079_RS07940
CU079_RS08015	SM00564	beta-propeller repeat
CU079_RS08030	SM00947	Carbonic anhydrase
CU079_RS08035	SM00382	ATPases associated with a variety of cellular activities
CU079_RS08130	SM00487	DEAD-like helicases superfamily
CU079_RS08130	SM00490	helicase superfamily c-terminal domain
CU079_RS08130	SM00847	Helicase associated domain (HA2)  Add an annotation
CU079_RS08170	SM00382	ATPases associated with a variety of cellular activities
CU079_RS08215	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU079_RS08225	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU079_RS08245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU079_RS08300	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU079_RS08310	SM00935	Outer membrane protein (OmpH-like)
CU079_RS08340	SM00481	DNA polymerase alpha chain like domain
CU079_RS08360	SM00977	TilS substrate C-terminal domain
CU079_RS08375	SM01322	CU079_RS08375
CU079_RS08420	SM00382	ATPases associated with a variety of cellular activities
CU079_RS08420	SM00930	CU079_RS08420
CU079_RS08475	SM00828	Methyltransferase  in polyketide synthase (PKS) enzymes.
CU079_RS08480	SM00257	Lysin motif
CU079_RS08485	SM00849	Metallo-beta-lactamase superfamily
CU079_RS08500	SM00479	CU079_RS08500
CU079_RS08520	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS08565	SM00052	Putative diguanylate phosphodiesterase
CU079_RS08640	SM00382	ATPases associated with a variety of cellular activities
CU079_RS08665	SM00382	ATPases associated with a variety of cellular activities
CU079_RS08720	SM00858	CU079_RS08720
CU079_RS08795	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS08880	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CU079_RS08890	SM00419	helix_turn_helix, cAMP Regulatory protein
CU079_RS08920	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS08930	SM00052	Putative diguanylate phosphodiesterase
CU079_RS08965	SM00354	helix_turn _helix lactose operon repressor
CU079_RS08975	SM00640	Glycosyl hydrolases family 32
CU079_RS08985	SM00640	Glycosyl hydrolases family 32
CU079_RS09005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS09025	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS09035	SM01230	CU079_RS09035
CU079_RS09090	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS09090	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS09105	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS09125	SM00267	diguanylate cyclase
CU079_RS09140	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09170	SM01266	CU079_RS09170
CU079_RS09180	SM01038	Beta galactosidase small chain
CU079_RS09185	SM00354	helix_turn _helix lactose operon repressor
CU079_RS09205	SM00912	haemagglutination activity domain
CU079_RS09250	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09270	SM00387	Histidine kinase-like ATPases
CU079_RS09275	SM00421	helix_turn_helix, Lux Regulon
CU079_RS09275	SM00448	cheY-homologous receiver domain
CU079_RS09280	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS09285	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09300	SM01004	Delta-aminolevulinic acid dehydratase
CU079_RS09310	SM00869	Autotransporter beta-domain
CU079_RS09360	SM00098	Alkaline phosphatase homologues
CU079_RS09370	SM00267	diguanylate cyclase
CU079_RS09430	SM00448	cheY-homologous receiver domain
CU079_RS09430	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS09435	SM00091	PAS domain
CU079_RS09435	SM00387	Histidine kinase-like ATPases
CU079_RS09435	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS09455	SM00642	Alpha-amylase domain
CU079_RS09515	SM01323	CU079_RS09515
CU079_RS09585	SM00861	Transketolase, pyrimidine binding domain
CU079_RS09600	SM00981	CU079_RS09600
CU079_RS09685	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09685	SM00994	ClpX C4-type zinc finger
CU079_RS09685	SM01086	C-terminal, D2-small domain, of ClpB protein
CU079_RS09690	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09690	SM00464	Found in ATP-dependent protease La (LON)
CU079_RS09695	SM00411	bacterial (prokaryotic) histone like domain
CU079_RS09735	SM00344	helix_turn_helix ASNC type
CU079_RS09740	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09745	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09755	SM00938	Nitrogen regulatory protein P-II
CU079_RS09795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS09810	SM00052	Putative diguanylate phosphodiesterase
CU079_RS09830	SM01266	CU079_RS09830
CU079_RS09890	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09900	SM00493	CU079_RS09900
CU079_RS09905	SM00387	Histidine kinase-like ATPases
CU079_RS09970	SM00382	ATPases associated with a variety of cellular activities
CU079_RS09990	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS10005	SM00422	helix_turn_helix, mercury resistance
CU079_RS10025	SM00244	prohibitin homologues
CU079_RS10030	SM00382	ATPases associated with a variety of cellular activities
CU079_RS10045	SM00822	CU079_RS10045
CU079_RS10055	SM00382	ATPases associated with a variety of cellular activities
CU079_RS10075	SM00382	ATPases associated with a variety of cellular activities
CU079_RS10075	SM00930	CU079_RS10075
CU079_RS10085	SM00450	Rhodanese Homology Domain
CU079_RS10100	SM00346	helix_turn_helix isocitrate lyase regulation
CU079_RS10185	SM01001	AIR carboxylase
CU079_RS10210	SM00840	CU079_RS10210
CU079_RS10260	SM00421	helix_turn_helix, Lux Regulon
CU079_RS10260	SM00448	cheY-homologous receiver domain
CU079_RS10270	SM00421	helix_turn_helix, Lux Regulon
CU079_RS10285	SM00073	Histidine Phosphotransfer domain
CU079_RS10285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS10285	SM00387	Histidine kinase-like ATPases
CU079_RS10285	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS10285	SM00448	cheY-homologous receiver domain
CU079_RS10295	SM00448	cheY-homologous receiver domain
CU079_RS10295	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS10330	SM00849	Metallo-beta-lactamase superfamily
CU079_RS10340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS10340	SM00387	Histidine kinase-like ATPases
CU079_RS10340	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS10370	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS10395	SM00421	helix_turn_helix, Lux Regulon
CU079_RS10400	SM00052	Putative diguanylate phosphodiesterase
CU079_RS10405	SM00710	Parallel beta-helix repeats
CU079_RS10405	SM00869	Autotransporter beta-domain
CU079_RS10450	SM00849	Metallo-beta-lactamase superfamily
CU079_RS10455	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS10490	SM00382	ATPases associated with a variety of cellular activities
CU079_RS10520	SM00861	Transketolase, pyrimidine binding domain
CU079_RS10545	SM00923	MbtH-like protein
CU079_RS10550	SM00824	Thioesterase
CU079_RS10555	SM00382	ATPases associated with a variety of cellular activities
CU079_RS10595	SM00822	CU079_RS10595
CU079_RS10605	SM00869	Autotransporter beta-domain
CU079_RS10635	SM00470	ParB-like nuclease domain
CU079_RS10670	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS10735	SM00764	Citrate lyase ligase C-terminal domain
CU079_RS10740	SM00091	PAS domain
CU079_RS10740	SM00387	Histidine kinase-like ATPases
CU079_RS10745	SM00448	cheY-homologous receiver domain
CU079_RS10760	SM00357	Cold shock protein domain
CU079_RS10780	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS10795	SM00936	Penicillin-binding protein 5, C-terminal domain 
CU079_RS10825	SM00855	Phosphoglycerate mutase family
CU079_RS10865	SM00382	ATPases associated with a variety of cellular activities
CU079_RS10880	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS10890	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU079_RS10890	SM01091	Transporter associated domain
CU079_RS10910	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS11075	SM00448	cheY-homologous receiver domain
CU079_RS11075	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS11080	SM00387	Histidine kinase-like ATPases
CU079_RS11080	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS11110	SM00421	helix_turn_helix, Lux Regulon
CU079_RS11125	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11165	SM00796	Allophanate hydrolase subunit 1
CU079_RS11170	SM00797	Allophanate hydrolase subunit 2
CU079_RS11195	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CU079_RS11195	SM01232	CU079_RS11195
CU079_RS11200	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS11265	SM00861	Transketolase, pyrimidine binding domain
CU079_RS11280	SM00881	CoA binding domain
CU079_RS11310	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS11310	SM01134	CU079_RS11310
CU079_RS11315	SM01007	Class II Aldolase and Adducin N-terminal domain
CU079_RS11325	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS11500	SM00855	Phosphoglycerate mutase family
CU079_RS11530	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11560	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS11610	SM00866	CU079_RS11610
CU079_RS11635	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS11635	SM00876	Biotin and Thiamin Synthesis associated domain
CU079_RS11655	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11665	SM00487	DEAD-like helicases superfamily
CU079_RS11665	SM00490	helicase superfamily c-terminal domain
CU079_RS11680	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS11685	SM00852	Probable molybdopterin binding domain
CU079_RS11715	SM00155	Phospholipase D. Active site motifs.
CU079_RS11740	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11755	SM00487	DEAD-like helicases superfamily
CU079_RS11755	SM00490	helicase superfamily c-terminal domain
CU079_RS11760	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS11760	SM00866	CU079_RS11760
CU079_RS11765	SM00998	Adenylosuccinate lyase C-terminus
CU079_RS11775	SM00487	DEAD-like helicases superfamily
CU079_RS11775	SM00488	CU079_RS11775
CU079_RS11775	SM00491	CU079_RS11775
CU079_RS11800	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CU079_RS11825	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11835	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS11835	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU079_RS11865	SM00529	Helix-turn-helix diphteria tox regulatory element
CU079_RS11880	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11925	SM00852	Probable molybdopterin binding domain
CU079_RS11940	SM00382	ATPases associated with a variety of cellular activities
CU079_RS11960	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS11995	SM00936	Penicillin-binding protein 5, C-terminal domain 
CU079_RS12000	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS12000	SM01134	CU079_RS12000
CU079_RS12005	SM00014	Acid phosphatase homologues
CU079_RS12080	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12125	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS12140	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12145	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12160	SM00344	helix_turn_helix ASNC type
CU079_RS12165	SM00843	CU079_RS12165
CU079_RS12175	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12185	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS12220	SM00861	Transketolase, pyrimidine binding domain
CU079_RS12305	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS12310	SM00411	bacterial (prokaryotic) histone like domain
CU079_RS12315	SM00849	Metallo-beta-lactamase superfamily
CU079_RS12320	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12395	SM00849	Metallo-beta-lactamase superfamily
CU079_RS12425	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12440	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS12470	SM00981	CU079_RS12470
CU079_RS12475	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12550	SM00851	MGS-like domain
CU079_RS12560	SM00881	CoA binding domain
CU079_RS12565	SM00992	Hemimethylated DNA-binding protein YccV like
CU079_RS12570	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CU079_RS12580	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS12595	SM00421	helix_turn_helix, Lux Regulon
CU079_RS12620	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS12660	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS12665	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12670	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12740	SM00634	Bacterial Ig-like domain (group 1)
CU079_RS12765	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12835	SM00271	DnaJ molecular chaperone homology domain
CU079_RS12870	SM00900	CU079_RS12870
CU079_RS12900	SM00382	ATPases associated with a variety of cellular activities
CU079_RS12920	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU079_RS13000	SM01119	CU079_RS13000
CU079_RS13030	SM00346	helix_turn_helix isocitrate lyase regulation
CU079_RS13045	SM00481	DNA polymerase alpha chain like domain
CU079_RS13075	SM00421	helix_turn_helix, Lux Regulon
CU079_RS13100	SM00506	Appr-1"-p processing enzyme
CU079_RS13105	SM00155	Phospholipase D. Active site motifs.
CU079_RS13140	SM00267	diguanylate cyclase
CU079_RS13155	SM00450	Rhodanese Homology Domain
CU079_RS13160	SM00867	YceI-like domain 
CU079_RS13305	SM00858	CU079_RS13305
CU079_RS13350	SM00047	Lysozyme subfamily 2
CU079_RS13375	SM00316	Ribosomal protein S1-like RNA-binding domain
CU079_RS13385	SM00363	S4 RNA-binding domain
CU079_RS13415	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CU079_RS13420	SM00822	CU079_RS13420
CU079_RS13430	SM00825	Beta-ketoacyl synthase
CU079_RS13635	SM01068	Putative carbohydrate binding domain
CU079_RS13640	SM00357	Cold shock protein domain
CU079_RS13645	SM00357	Cold shock protein domain
CU079_RS13655	SM00528	Domain in histone-like proteins of HNS family
CU079_RS13790	SM00646	CU079_RS13790
CU079_RS13810	SM00382	ATPases associated with a variety of cellular activities
CU079_RS13815	SM00421	helix_turn_helix, Lux Regulon
CU079_RS13820	SM00861	Transketolase, pyrimidine binding domain
CU079_RS13840	SM00825	Beta-ketoacyl synthase
CU079_RS13985	SM00257	Lysin motif
CU079_RS13990	SM00487	DEAD-like helicases superfamily
CU079_RS13990	SM00490	helicase superfamily c-terminal domain
CU079_RS13990	SM00982	CU079_RS13990
CU079_RS13990	SM01058	CarD-like/TRCF domain
CU079_RS14005	SM00382	ATPases associated with a variety of cellular activities
CU079_RS14045	SM00382	ATPases associated with a variety of cellular activities
CU079_RS14055	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CU079_RS14060	SM00387	Histidine kinase-like ATPases
CU079_RS14065	SM00448	cheY-homologous receiver domain
CU079_RS14065	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS14100	SM01329	CU079_RS14100
CU079_RS14110	SM00346	helix_turn_helix isocitrate lyase regulation
CU079_RS14140	SM00357	Cold shock protein domain
CU079_RS14190	SM01091	Transporter associated domain
CU079_RS14195	SM00052	Putative diguanylate phosphodiesterase
CU079_RS14225	SM00487	DEAD-like helicases superfamily
CU079_RS14225	SM00491	CU079_RS14225
CU079_RS14250	SM00341	Helicase and RNase D C-terminal
CU079_RS14250	SM00474	3'-5' exonuclease
CU079_RS14270	SM01329	CU079_RS14270
CU079_RS14325	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS14340	SM01005	Alanine racemase, C-terminal domain
CU079_RS14345	SM01091	Transporter associated domain
CU079_RS14390	SM00382	ATPases associated with a variety of cellular activities
CU079_RS14415	SM01120	CU079_RS14415
CU079_RS14425	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CU079_RS14430	SM00972	Spore Coat Protein U domain
CU079_RS14445	SM00972	Spore Coat Protein U domain
CU079_RS14450	SM00422	helix_turn_helix, mercury resistance
CU079_RS14455	SM00052	Putative diguanylate phosphodiesterase
CU079_RS14455	SM01034	Sensors of blue-light using FAD
CU079_RS14480	SM00421	helix_turn_helix, Lux Regulon
CU079_RS14530	SM00344	helix_turn_helix ASNC type
CU079_RS14555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS14555	SM00387	Histidine kinase-like ATPases
CU079_RS14555	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS14560	SM00448	cheY-homologous receiver domain
CU079_RS14560	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS14605	SM01400	CU079_RS14605
CU079_RS14625	SM00937	CU079_RS14625
CU079_RS14675	SM01012	CU079_RS14675
CU079_RS14690	SM00382	ATPases associated with a variety of cellular activities
CU079_RS14700	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS14710	SM00421	helix_turn_helix, Lux Regulon
CU079_RS14710	SM00448	cheY-homologous receiver domain
CU079_RS14715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS14715	SM00387	Histidine kinase-like ATPases
CU079_RS14730	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS14785	SM00448	cheY-homologous receiver domain
CU079_RS14795	SM00528	Domain in histone-like proteins of HNS family
CU079_RS14845	SM00382	ATPases associated with a variety of cellular activities
CU079_RS14850	SM00382	ATPases associated with a variety of cellular activities
CU079_RS14865	SM00155	Phospholipase D. Active site motifs.
CU079_RS14930	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS14935	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS15015	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15070	SM00357	Cold shock protein domain
CU079_RS15095	SM00507	HNH nucleases
CU079_RS15195	SM00060	Fibronectin type 3 domain
CU079_RS15230	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU079_RS15285	SM00267	diguanylate cyclase
CU079_RS15315	SM00481	DNA polymerase alpha chain like domain
CU079_RS15325	SM00363	S4 RNA-binding domain
CU079_RS15335	SM00822	CU079_RS15335
CU079_RS15350	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CU079_RS15350	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CU079_RS15350	SM00493	CU079_RS15350
CU079_RS15375	SM00014	Acid phosphatase homologues
CU079_RS15385	SM00028	Tetratricopeptide repeats
CU079_RS15390	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CU079_RS15405	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS15405	SM01134	CU079_RS15405
CU079_RS15420	SM00052	Putative diguanylate phosphodiesterase
CU079_RS15420	SM00091	PAS domain
CU079_RS15420	SM00267	diguanylate cyclase
CU079_RS15425	SM00357	Cold shock protein domain
CU079_RS15425	SM00955	CU079_RS15425
CU079_RS15445	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15450	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15485	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15510	SM00642	Alpha-amylase domain
CU079_RS15555	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15565	SM00354	helix_turn _helix lactose operon repressor
CU079_RS15570	SM00450	Rhodanese Homology Domain
CU079_RS15585	SM00091	PAS domain
CU079_RS15585	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15595	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU079_RS15615	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS15615	SM01134	CU079_RS15615
CU079_RS15630	SM00829	Enoylreductase
CU079_RS15650	SM00100	Cyclic nucleotide-monophosphate binding domain
CU079_RS15650	SM00419	helix_turn_helix, cAMP Regulatory protein
CU079_RS15660	SM00463	Small MutS-related domain
CU079_RS15665	SM00091	PAS domain
CU079_RS15665	SM00267	diguanylate cyclase
CU079_RS15670	SM00052	Putative diguanylate phosphodiesterase
CU079_RS15670	SM00267	diguanylate cyclase
CU079_RS15675	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS15690	SM00487	DEAD-like helicases superfamily
CU079_RS15690	SM00490	helicase superfamily c-terminal domain
CU079_RS15725	SM00890	Domain of unknown function
CU079_RS15780	SM00563	Phosphate acyltransferases
CU079_RS15790	SM00195	Dual specificity phosphatase, catalytic domain
CU079_RS15790	SM00404	Protein tyrosine phosphatase, catalytic domain motif
CU079_RS15810	SM00382	ATPases associated with a variety of cellular activities
CU079_RS15810	SM00487	DEAD-like helicases superfamily
CU079_RS15810	SM00490	helicase superfamily c-terminal domain
CU079_RS15810	SM00847	Helicase associated domain (HA2)  Add an annotation
CU079_RS15855	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CU079_RS15890	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS15900	SM00829	Enoylreductase
CU079_RS15910	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS15910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS15910	SM00319	Homologues of the ligand binding domain of Tar
CU079_RS15920	SM01131	CU079_RS15920
CU079_RS15925	SM01150	CU079_RS15925
CU079_RS15975	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS15985	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS16025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS16035	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16060	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS16110	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS16115	SM00829	Enoylreductase
CU079_RS16140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS16160	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS16175	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16190	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU079_RS16195	SM00354	helix_turn _helix lactose operon repressor
CU079_RS16205	SM00849	Metallo-beta-lactamase superfamily
CU079_RS16210	SM00903	Flavin reductase like domain
CU079_RS16240	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS16275	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS16300	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS16310	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16320	SM00919	Malic enzyme, NAD binding domain
CU079_RS16320	SM01274	CU079_RS16320
CU079_RS16355	SM00882	Coenzyme A transferase
CU079_RS16360	SM00882	Coenzyme A transferase
CU079_RS16370	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16375	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS16410	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS16415	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS16445	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16475	SM00849	Metallo-beta-lactamase superfamily
CU079_RS16535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS16535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS16535	SM00319	Homologues of the ligand binding domain of Tar
CU079_RS16550	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS16550	SM01134	CU079_RS16550
CU079_RS16570	SM01130	CU079_RS16570
CU079_RS16595	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS16600	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS16620	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16625	SM00382	ATPases associated with a variety of cellular activities
CU079_RS16655	SM00267	diguanylate cyclase
CU079_RS16670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS16670	SM00895	CU079_RS16670
CU079_RS16690	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU079_RS16720	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS16725	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS16775	SM00387	Histidine kinase-like ATPases
CU079_RS16775	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS16780	SM00448	cheY-homologous receiver domain
CU079_RS16780	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS16855	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CU079_RS16855	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CU079_RS16885	SM00448	cheY-homologous receiver domain
CU079_RS16885	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS16905	SM00849	Metallo-beta-lactamase superfamily
CU079_RS16935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS16935	SM00387	Histidine kinase-like ATPases
CU079_RS16935	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS17030	SM00900	CU079_RS17030
CU079_RS17040	SM00478	endonuclease III
CU079_RS17040	SM00525	CU079_RS17040
CU079_RS17065	SM00363	S4 RNA-binding domain
CU079_RS17090	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS17140	SM00479	CU079_RS17140
CU079_RS17175	SM00354	helix_turn _helix lactose operon repressor
CU079_RS17240	SM00052	Putative diguanylate phosphodiesterase
CU079_RS17240	SM00267	diguanylate cyclase
CU079_RS17250	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS17265	SM00267	diguanylate cyclase
CU079_RS17265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS17305	SM00965	Secretin and TonB N terminus short domain
CU079_RS17325	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17330	SM00822	CU079_RS17330
CU079_RS17365	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17415	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS17470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS17470	SM00895	CU079_RS17470
CU079_RS17495	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS17495	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU079_RS17500	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17535	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CU079_RS17550	SM00421	helix_turn_helix, Lux Regulon
CU079_RS17550	SM00448	cheY-homologous receiver domain
CU079_RS17570	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS17585	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17585	SM00930	CU079_RS17585
CU079_RS17605	SM00257	Lysin motif
CU079_RS17625	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17645	SM00849	Metallo-beta-lactamase superfamily
CU079_RS17700	SM00882	Coenzyme A transferase
CU079_RS17710	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS17715	SM00893	Electron transfer flavoprotein domain
CU079_RS17720	SM00893	Electron transfer flavoprotein domain
CU079_RS17780	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17800	SM00382	ATPases associated with a variety of cellular activities
CU079_RS17815	SM00411	bacterial (prokaryotic) histone like domain
CU079_RS17820	SM00873	B3/4 domain
CU079_RS17820	SM00874	tRNA synthetase B5 domain
CU079_RS17820	SM00896	Ferredoxin-fold anticodon binding domain
CU079_RS17845	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU079_RS17900	SM01060	CU079_RS17900
CU079_RS17915	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS17950	SM00465	GIY-YIG type nucleases (URI domain)
CU079_RS18035	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18040	SM00450	Rhodanese Homology Domain
CU079_RS18065	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CU079_RS18070	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CU079_RS18070	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CU079_RS18070	SM00493	CU079_RS18070
CU079_RS18100	SM00870	CU079_RS18100
CU079_RS18115	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS18115	SM01134	CU079_RS18115
CU079_RS18135	SM00829	Enoylreductase
CU079_RS18145	SM00829	Enoylreductase
CU079_RS18150	SM00636	CU079_RS18150
CU079_RS18155	SM00507	HNH nucleases
CU079_RS18170	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CU079_RS18200	SM00763	PrkA AAA domain
CU079_RS18225	SM00267	diguanylate cyclase
CU079_RS18240	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS18265	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU079_RS18265	SM00267	diguanylate cyclase
CU079_RS18285	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS18320	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18325	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18350	SM00052	Putative diguanylate phosphodiesterase
CU079_RS18360	SM00869	Autotransporter beta-domain
CU079_RS18380	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CU079_RS18380	SM00245	tail specific protease
CU079_RS18385	SM00945	ProQ/FINO family
CU079_RS18390	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU079_RS18425	SM00974	CU079_RS18425
CU079_RS18455	SM00479	CU079_RS18455
CU079_RS18515	SM00257	Lysin motif
CU079_RS18525	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18535	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18540	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU079_RS18600	SM00836	DALR anticodon binding domain
CU079_RS18600	SM01016	Arginyl tRNA synthetase N terminal dom
CU079_RS18640	SM00448	cheY-homologous receiver domain
CU079_RS18645	SM00448	cheY-homologous receiver domain
CU079_RS18650	SM00138	Methyltransferase, chemotaxis proteins 
CU079_RS18655	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS18655	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS18655	SM00319	Homologues of the ligand binding domain of Tar
CU079_RS18660	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS18660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS18660	SM00319	Homologues of the ligand binding domain of Tar
CU079_RS18670	SM00260	Two component signalling adaptor domain
CU079_RS18675	SM00073	Histidine Phosphotransfer domain
CU079_RS18675	SM00260	Two component signalling adaptor domain
CU079_RS18675	SM00387	Histidine kinase-like ATPases
CU079_RS18675	SM01231	CU079_RS18675
CU079_RS18725	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18800	SM00460	Transglutaminase/protease-like homologues
CU079_RS18840	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU079_RS18840	SM00465	GIY-YIG type nucleases (URI domain)
CU079_RS18845	SM00421	helix_turn_helix, Lux Regulon
CU079_RS18845	SM00448	cheY-homologous receiver domain
CU079_RS18855	SM00421	helix_turn_helix, Lux Regulon
CU079_RS18860	SM00382	ATPases associated with a variety of cellular activities
CU079_RS18875	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS18875	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU079_RS18915	SM00642	Alpha-amylase domain
CU079_RS18960	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19010	SM00421	helix_turn_helix, Lux Regulon
CU079_RS19050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU079_RS19085	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19115	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19195	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS19205	SM00877	CU079_RS19205
CU079_RS19210	SM00877	CU079_RS19210
CU079_RS19240	SM00877	CU079_RS19240
CU079_RS19245	SM00877	CU079_RS19245
CU079_RS19285	SM00877	CU079_RS19285
CU079_RS19290	SM00877	CU079_RS19290
CU079_RS19320	SM00871	Bacterial transcription activator, effector binding domain
CU079_RS19325	SM00936	Penicillin-binding protein 5, C-terminal domain 
CU079_RS19340	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS19345	SM00479	CU079_RS19345
CU079_RS19410	SM00984	UDP binding domain
CU079_RS19415	SM01350	CU079_RS19415
CU079_RS19440	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19565	SM00226	Low molecular weight phosphatase family
CU079_RS19575	SM01091	Transporter associated domain
CU079_RS19600	SM00052	Putative diguanylate phosphodiesterase
CU079_RS19600	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CU079_RS19600	SM00091	PAS domain
CU079_RS19600	SM00267	diguanylate cyclase
CU079_RS19605	SM00478	endonuclease III
CU079_RS19605	SM01009	AlkA N-terminal domain
CU079_RS19635	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS19635	SM00387	Histidine kinase-like ATPases
CU079_RS19635	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS19640	SM00448	cheY-homologous receiver domain
CU079_RS19640	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS19840	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS19850	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19850	SM01086	C-terminal, D2-small domain, of ClpB protein
CU079_RS19860	SM00357	Cold shock protein domain
CU079_RS19865	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19935	SM00644	CU079_RS19935
CU079_RS19950	SM00382	ATPases associated with a variety of cellular activities
CU079_RS19955	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS19955	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU079_RS19970	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS19970	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CU079_RS19975	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CU079_RS19980	SM01133	CU079_RS19980
CU079_RS20005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS20005	SM00866	CU079_RS20005
CU079_RS20080	SM00448	cheY-homologous receiver domain
CU079_RS20080	SM00850	LytTr DNA-binding domain
CU079_RS20085	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU079_RS20090	SM00422	helix_turn_helix, mercury resistance
CU079_RS20105	SM00382	ATPases associated with a variety of cellular activities
CU079_RS20120	SM01217	CU079_RS20120
CU079_RS20235	SM00382	ATPases associated with a variety of cellular activities
CU079_RS20245	SM00354	helix_turn _helix lactose operon repressor
CU079_RS20270	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS20315	SM00518	AP endonuclease family 2
CU079_RS20390	SM00841	Elongation factor P, C-terminal
CU079_RS20390	SM01185	CU079_RS20390
CU079_RS20410	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS20425	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CU079_RS20430	SM00014	Acid phosphatase homologues
CU079_RS20445	SM00052	Putative diguanylate phosphodiesterase
CU079_RS20465	SM00382	ATPases associated with a variety of cellular activities
CU079_RS20485	SM00363	S4 RNA-binding domain
CU079_RS20490	SM00487	DEAD-like helicases superfamily
CU079_RS20490	SM00490	helicase superfamily c-terminal domain
CU079_RS20525	SM00421	helix_turn_helix, Lux Regulon
CU079_RS20525	SM00448	cheY-homologous receiver domain
CU079_RS20565	SM00382	ATPases associated with a variety of cellular activities
CU079_RS20590	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS20620	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU079_RS20620	SM00924	MgtE intracellular N domain
CU079_RS20625	SM00382	ATPases associated with a variety of cellular activities
CU079_RS20635	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS20655	SM00387	Histidine kinase-like ATPases
CU079_RS20660	SM00421	helix_turn_helix, Lux Regulon
CU079_RS20660	SM00448	cheY-homologous receiver domain
CU079_RS20665	SM00387	Histidine kinase-like ATPases
CU079_RS20665	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS20665	SM00448	cheY-homologous receiver domain
CU079_RS20670	SM00434	DNA Topoisomerase IV
CU079_RS20725	SM00852	Probable molybdopterin binding domain
CU079_RS20785	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU079_RS20825	SM00260	Two component signalling adaptor domain
CU079_RS20825	SM00448	cheY-homologous receiver domain
CU079_RS20865	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CU079_RS20865	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CU079_RS20870	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CU079_RS20905	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CU079_RS20970	SM00905	Dihydroneopterin aldolase
CU079_RS20985	SM00382	ATPases associated with a variety of cellular activities
CU079_RS21000	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS21005	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS21015	SM00354	helix_turn _helix lactose operon repressor
CU079_RS21070	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CU079_RS21095	SM00825	Beta-ketoacyl synthase
CU079_RS21135	SM00463	Small MutS-related domain
CU079_RS21185	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS21185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS21195	SM00448	cheY-homologous receiver domain
CU079_RS21200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS21200	SM00387	Histidine kinase-like ATPases
CU079_RS21200	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS21240	SM00387	Histidine kinase-like ATPases
CU079_RS21245	SM00448	cheY-homologous receiver domain
CU079_RS21245	SM00850	LytTr DNA-binding domain
CU079_RS21250	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS21310	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS21320	SM00382	ATPases associated with a variety of cellular activities
CU079_RS21420	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CU079_RS21420	SM00292	breast cancer carboxy-terminal domain
CU079_RS21420	SM00532	Ligase N family
CU079_RS21425	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CU079_RS21465	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS21480	SM00382	ATPases associated with a variety of cellular activities
CU079_RS21500	SM00822	CU079_RS21500
CU079_RS21505	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS21505	SM00895	CU079_RS21505
CU079_RS21545	SM00646	CU079_RS21545
CU079_RS21555	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS21560	SM00877	CU079_RS21560
CU079_RS21565	SM00877	CU079_RS21565
CU079_RS21610	SM00877	CU079_RS21610
CU079_RS21635	SM00877	CU079_RS21635
CU079_RS21640	SM00919	Malic enzyme, NAD binding domain
CU079_RS21640	SM01274	CU079_RS21640
CU079_RS21650	SM00861	Transketolase, pyrimidine binding domain
CU079_RS21670	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS21670	SM00387	Histidine kinase-like ATPases
CU079_RS21725	SM01130	CU079_RS21725
CU079_RS21815	SM00052	Putative diguanylate phosphodiesterase
CU079_RS21815	SM00267	diguanylate cyclase
CU079_RS21840	SM00116	Domain in cystathionine beta-synthase and other proteins.
CU079_RS21840	SM01240	CU079_RS21840
CU079_RS21885	SM00564	beta-propeller repeat
CU079_RS21905	SM00530	Helix-turn-helix XRE-family like proteins 
CU079_RS21915	SM00562	CU079_RS21915
CU079_RS21925	SM01359	CU079_RS21925
CU079_RS21925	SM01360	CU079_RS21925
CU079_RS21930	SM00450	Rhodanese Homology Domain
CU079_RS21960	SM00271	DnaJ molecular chaperone homology domain
CU079_RS22015	SM00382	ATPases associated with a variety of cellular activities
CU079_RS22060	SM00028	Tetratricopeptide repeats
CU079_RS22090	SM00938	Nitrogen regulatory protein P-II
CU079_RS22095	SM00382	ATPases associated with a variety of cellular activities
CU079_RS22095	SM00448	cheY-homologous receiver domain
CU079_RS22105	SM00387	Histidine kinase-like ATPases
CU079_RS22105	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS22110	SM01211	CU079_RS22110
CU079_RS22115	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS22170	SM00358	Double-stranded RNA binding motif
CU079_RS22170	SM00535	Ribonuclease III family
CU079_RS22225	SM00487	DEAD-like helicases superfamily
CU079_RS22225	SM00490	helicase superfamily c-terminal domain
CU079_RS22235	SM00986	Uracil DNA glycosylase superfamily
CU079_RS22235	SM00987	UreE urease accessory protein, C-terminal domain 
CU079_RS22240	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CU079_RS22255	SM01144	CU079_RS22255
CU079_RS22260	SM00881	CoA binding domain
CU079_RS22265	SM00155	Phospholipase D. Active site motifs.
CU079_RS22300	SM00382	ATPases associated with a variety of cellular activities
CU079_RS22300	SM01086	C-terminal, D2-small domain, of ClpB protein
CU079_RS22310	SM00363	S4 RNA-binding domain
CU079_RS22330	SM00830	Chorismate mutase type II
CU079_RS22335	SM00830	Chorismate mutase type II
CU079_RS22355	SM00267	diguanylate cyclase
CU079_RS22365	SM00954	Region found in RelA / SpoT proteins
CU079_RS22465	SM00382	ATPases associated with a variety of cellular activities
CU079_RS22465	SM00962	SRP54-type protein, GTPase domain
CU079_RS22465	SM00963	SRP54-type protein, helical bundle domain
CU079_RS22480	SM01091	Transporter associated domain
CU079_RS22535	SM00382	ATPases associated with a variety of cellular activities
CU079_RS22560	SM00052	Putative diguanylate phosphodiesterase
CU079_RS22730	SM00507	HNH nucleases
CU079_RS23065	SM00052	Putative diguanylate phosphodiesterase
CU079_RS23070	SM00869	Autotransporter beta-domain
CU079_RS23075	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS23175	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS23175	SM00073	Histidine Phosphotransfer domain
CU079_RS23175	SM00387	Histidine kinase-like ATPases
CU079_RS23175	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS23175	SM00448	cheY-homologous receiver domain
CU079_RS23180	SM00421	helix_turn_helix, Lux Regulon
CU079_RS23180	SM00448	cheY-homologous receiver domain
CU079_RS23210	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS23225	SM00947	Carbonic anhydrase
CU079_RS23295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS23295	SM00387	Histidine kinase-like ATPases
CU079_RS23295	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS23300	SM00448	cheY-homologous receiver domain
CU079_RS23300	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS23330	SM00354	helix_turn _helix lactose operon repressor
CU079_RS23375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS23375	SM00895	CU079_RS23375
CU079_RS23380	SM00257	Lysin motif
CU079_RS23380	SM00749	bacterial OsmY and nodulation domain
CU079_RS23390	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CU079_RS23395	SM00450	Rhodanese Homology Domain
CU079_RS23405	SM00528	Domain in histone-like proteins of HNS family
CU079_RS23420	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CU079_RS23455	SM00382	ATPases associated with a variety of cellular activities
CU079_RS23485	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS23555	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CU079_RS23565	SM00382	ATPases associated with a variety of cellular activities
CU079_RS23605	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS23605	SM01134	CU079_RS23605
CU079_RS23615	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU079_RS23615	SM00382	ATPases associated with a variety of cellular activities
CU079_RS23620	SM00849	Metallo-beta-lactamase superfamily
CU079_RS23640	SM00354	helix_turn _helix lactose operon repressor
CU079_RS23735	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU079_RS23735	SM00382	ATPases associated with a variety of cellular activities
CU079_RS23755	SM00919	Malic enzyme, NAD binding domain
CU079_RS23755	SM01274	CU079_RS23755
CU079_RS23770	SM00998	Adenylosuccinate lyase C-terminus
CU079_RS23790	SM00382	ATPases associated with a variety of cellular activities
CU079_RS23810	SM00260	Two component signalling adaptor domain
CU079_RS23815	SM00073	Histidine Phosphotransfer domain
CU079_RS23815	SM00267	diguanylate cyclase
CU079_RS23815	SM00448	cheY-homologous receiver domain
CU079_RS23820	SM00448	cheY-homologous receiver domain
CU079_RS23825	SM00073	Histidine Phosphotransfer domain
CU079_RS23825	SM00260	Two component signalling adaptor domain
CU079_RS23825	SM00387	Histidine kinase-like ATPases
CU079_RS23825	SM00448	cheY-homologous receiver domain
CU079_RS23825	SM01231	CU079_RS23825
CU079_RS23830	SM00138	Methyltransferase, chemotaxis proteins 
CU079_RS23840	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS23840	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS23845	SM00052	Putative diguanylate phosphodiesterase
CU079_RS23845	SM00267	diguanylate cyclase
CU079_RS23850	SM00052	Putative diguanylate phosphodiesterase
CU079_RS23850	SM00267	diguanylate cyclase
CU079_RS23855	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS23860	SM00062	Bacterial periplasmic substrate-binding proteins
CU079_RS23870	SM00052	Putative diguanylate phosphodiesterase
CU079_RS23870	SM00267	diguanylate cyclase
CU079_RS23890	SM00382	ATPases associated with a variety of cellular activities
CU079_RS23905	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS23915	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CU079_RS23915	SM00534	ATPase domain of DNA mismatch repair MUTS family
CU079_RS23945	SM00347	helix_turn_helix multiple antibiotic resistance protein
CU079_RS23955	SM00257	Lysin motif
CU079_RS24065	SM01192	CU079_RS24065
CU079_RS24065	SM01193	CU079_RS24065
CU079_RS24080	SM00954	Region found in RelA / SpoT proteins
CU079_RS24090	SM00073	Histidine Phosphotransfer domain
CU079_RS24090	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS24090	SM00387	Histidine kinase-like ATPases
CU079_RS24090	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS24090	SM00448	cheY-homologous receiver domain
CU079_RS24100	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU079_RS24105	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CU079_RS24155	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CU079_RS24155	SM00475	5'-3' exonuclease
CU079_RS24165	SM01007	Class II Aldolase and Adducin N-terminal domain
CU079_RS24170	SM00354	helix_turn _helix lactose operon repressor
CU079_RS24190	SM00382	ATPases associated with a variety of cellular activities
CU079_RS24210	SM00420	helix_turn_helix, Deoxyribose operon repressor
CU079_RS24210	SM01134	CU079_RS24210
CU079_RS24250	SM00925	MltA specific insert domain
CU079_RS24270	SM00646	CU079_RS24270
CU079_RS24330	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CU079_RS24340	SM00927	DNA mismatch repair enzyme MutH
CU079_RS24365	SM00563	Phosphate acyltransferases
CU079_RS24375	SM00354	helix_turn _helix lactose operon repressor
CU079_RS24495	SM00248	ankyrin repeats
CU079_RS24580	SM00984	UDP binding domain
CU079_RS24595	SM00257	Lysin motif
CU079_RS24660	SM01022	CU079_RS24660
CU079_RS24675	SM00822	CU079_RS24675
CU079_RS24705	SM01011	Aminopeptidase P, N-terminal domain
CU079_RS24805	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CU079_RS24830	SM00382	ATPases associated with a variety of cellular activities
CU079_RS24835	SM00382	ATPases associated with a variety of cellular activities
CU079_RS24870	SM00861	Transketolase, pyrimidine binding domain
CU079_RS24920	SM00731	SprT homologues.
CU079_RS24945	SM00732	Likely ribonuclease with RNase H fold.
CU079_RS24965	SM01152	CU079_RS24965
CU079_RS24975	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS24980	SM00870	CU079_RS24980
CU079_RS25000	SM00478	endonuclease III
CU079_RS25000	SM00525	CU079_RS25000
CU079_RS25145	SM00382	ATPases associated with a variety of cellular activities
CU079_RS25145	SM01086	C-terminal, D2-small domain, of ClpB protein
CU079_RS25240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CU079_RS25240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CU079_RS25295	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS25320	SM00729	Elongator protein 3, MiaB family, Radical SAM
CU079_RS25335	SM00563	Phosphate acyltransferases
CU079_RS25340	SM00434	DNA Topoisomerase IV
CU079_RS25350	SM00448	cheY-homologous receiver domain
CU079_RS25350	SM00862	Transcriptional regulatory protein, C terminal
CU079_RS25355	SM00387	Histidine kinase-like ATPases
CU079_RS25355	SM00388	His Kinase A (phosphoacceptor) domain
CU079_RS25385	SM00342	helix_turn_helix, arabinose operon control protein
CU079_RS25390	SM00387	Histidine kinase-like ATPases
CU079_RS25390	SM00433	TopoisomeraseII
CU079_RS25490	SM00244	prohibitin homologues
CU079_RS25505	SM01118	CU079_RS25505
CU079_RS25515	SM00287	Bacterial SH3 domain homologues
CU079_RS25530	SM00905	Dihydroneopterin aldolase
CU079_RS25535	SM01207	CU079_RS25535
CU079_RS25580	SM00988	UreE urease accessory protein, N-terminal domain
CU079_RS25670	SM00857	Resolvase, N terminal domain
CU079_RS25875	SM00857	Resolvase, N terminal domain
CU079_RS25920	SM00271	DnaJ molecular chaperone homology domain
CU079_RS25965	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CU079_RS26050	SM00318	Staphylococcal nuclease homologues
CU079_RS26055	SM00382	ATPases associated with a variety of cellular activities
CU079_RS26060	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CU079_RS26060	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CU079_RS26060	SM00493	CU079_RS26060
CU079_RS26065	SM00528	Domain in histone-like proteins of HNS family
CU079_RS26135	SM00849	Metallo-beta-lactamase superfamily
