AM352_RS00030	SM00354	helix_turn _helix lactose operon repressor
AM352_RS00055	SM00917	LeuA allosteric (dimerisation) domain
AM352_RS00060	SM01329	AM352_RS00060
AM352_RS00100	SM00382	ATPases associated with a variety of cellular activities
AM352_RS00110	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS00125	SM01007	Class II Aldolase and Adducin N-terminal domain
AM352_RS00130	SM00486	DNA polymerase type-B family
AM352_RS00135	SM00487	DEAD-like helicases superfamily
AM352_RS00135	SM00490	helicase superfamily c-terminal domain
AM352_RS00145	SM00271	DnaJ molecular chaperone homology domain
AM352_RS00170	SM00650	Ribosomal RNA adenine dimethylases
AM352_RS00230	SM00893	Electron transfer flavoprotein domain
AM352_RS00235	SM00893	Electron transfer flavoprotein domain
AM352_RS00285	SM00851	MGS-like domain
AM352_RS00285	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AM352_RS00290	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AM352_RS00330	SM00091	PAS domain
AM352_RS00330	SM00387	Histidine kinase-like ATPases
AM352_RS00335	SM00448	cheY-homologous receiver domain
AM352_RS00360	SM00904	Riboflavin kinase
AM352_RS00385	SM00271	DnaJ molecular chaperone homology domain
AM352_RS00405	SM00852	Probable molybdopterin binding domain
AM352_RS00460	SM00448	cheY-homologous receiver domain
AM352_RS00460	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS00470	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS00470	SM00871	Bacterial transcription activator, effector binding domain
AM352_RS00475	SM00855	Phosphoglycerate mutase family
AM352_RS00500	SM00382	ATPases associated with a variety of cellular activities
AM352_RS00505	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS00510	SM00382	ATPases associated with a variety of cellular activities
AM352_RS00560	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AM352_RS00565	SM01133	AM352_RS00565
AM352_RS00595	SM00749	bacterial OsmY and nodulation domain
AM352_RS00645	SM00267	diguanylate cyclase
AM352_RS00665	SM00421	helix_turn_helix, Lux Regulon
AM352_RS00670	SM00421	helix_turn_helix, Lux Regulon
AM352_RS00690	SM00382	ATPases associated with a variety of cellular activities
AM352_RS00710	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS00710	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS00710	SM00319	Homologues of the ligand binding domain of Tar
AM352_RS00730	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AM352_RS00745	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM352_RS00755	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS00885	SM00487	DEAD-like helicases superfamily
AM352_RS00885	SM00490	helicase superfamily c-terminal domain
AM352_RS00905	SM00974	AM352_RS00905
AM352_RS00935	SM00487	DEAD-like helicases superfamily
AM352_RS00970	SM00829	Enoylreductase
AM352_RS01105	SM00831	Cation transporter/ATPase, N-terminus
AM352_RS01115	SM00354	helix_turn _helix lactose operon repressor
AM352_RS01125	SM00642	Alpha-amylase domain
AM352_RS01145	SM00872	Alpha mannosidase, middle domain
AM352_RS01150	SM00642	Alpha-amylase domain
AM352_RS01240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS01240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS01255	SM00382	ATPases associated with a variety of cellular activities
AM352_RS01290	SM01091	Transporter associated domain
AM352_RS01325	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS01335	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS01335	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS01335	SM00319	Homologues of the ligand binding domain of Tar
AM352_RS01390	SM01007	Class II Aldolase and Adducin N-terminal domain
AM352_RS01400	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM352_RS01425	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS01425	SM01134	AM352_RS01425
AM352_RS01450	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM352_RS01455	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS01455	SM00357	Cold shock protein domain
AM352_RS01455	SM00955	AM352_RS01455
AM352_RS01470	SM00788	Adenylosuccinate synthetase
AM352_RS01480	SM00244	prohibitin homologues
AM352_RS01485	SM00244	prohibitin homologues
AM352_RS01505	SM00853	MutL C terminal dimerisation domain
AM352_RS01505	SM01340	AM352_RS01505
AM352_RS01510	SM00646	AM352_RS01510
AM352_RS01545	SM00479	AM352_RS01545
AM352_RS01615	SM00421	helix_turn_helix, Lux Regulon
AM352_RS01630	SM00841	Elongation factor P, C-terminal
AM352_RS01630	SM01185	AM352_RS01630
AM352_RS01655	SM00883	Chaperonin 10 Kd subunit
AM352_RS01755	SM00052	Putative diguanylate phosphodiesterase
AM352_RS01760	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS01765	SM00919	Malic enzyme, NAD binding domain
AM352_RS01765	SM01274	AM352_RS01765
AM352_RS01780	SM00998	Adenylosuccinate lyase C-terminus
AM352_RS01805	SM00354	helix_turn _helix lactose operon repressor
AM352_RS01880	SM00382	ATPases associated with a variety of cellular activities
AM352_RS01890	SM00091	PAS domain
AM352_RS01890	SM00387	Histidine kinase-like ATPases
AM352_RS01895	SM00448	cheY-homologous receiver domain
AM352_RS01915	SM00448	cheY-homologous receiver domain
AM352_RS01915	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS01920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS01920	SM00387	Histidine kinase-like ATPases
AM352_RS01920	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS01960	SM00382	ATPases associated with a variety of cellular activities
AM352_RS01975	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS01975	SM00866	AM352_RS01975
AM352_RS02000	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02005	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02015	SM00072	Guanylate kinase homologues.
AM352_RS02050	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS02070	SM00387	Histidine kinase-like ATPases
AM352_RS02070	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS02070	SM00448	cheY-homologous receiver domain
AM352_RS02080	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02110	SM00448	cheY-homologous receiver domain
AM352_RS02110	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS02120	SM00671	Sel1-like repeats.
AM352_RS02190	SM01321	AM352_RS02190
AM352_RS02225	SM00422	helix_turn_helix, mercury resistance
AM352_RS02230	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS02235	SM00052	Putative diguanylate phosphodiesterase
AM352_RS02260	SM00965	Secretin and TonB N terminus short domain
AM352_RS02280	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02285	SM00831	Cation transporter/ATPase, N-terminus
AM352_RS02330	SM01005	Alanine racemase, C-terminal domain
AM352_RS02335	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02340	SM00829	Enoylreductase
AM352_RS02400	SM00563	Phosphate acyltransferases
AM352_RS02425	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02490	SM00363	S4 RNA-binding domain
AM352_RS02505	SM01018	B12 binding domain
AM352_RS02510	SM00346	helix_turn_helix isocitrate lyase regulation
AM352_RS02560	SM00798	AICARFT/IMPCHase bienzyme
AM352_RS02560	SM00851	MGS-like domain
AM352_RS02565	SM01209	AM352_RS02565
AM352_RS02565	SM01210	AM352_RS02565
AM352_RS02575	SM00411	bacterial (prokaryotic) histone like domain
AM352_RS02630	SM00876	Biotin and Thiamin Synthesis associated domain
AM352_RS02650	SM00663	RNA polymerase I subunit A N-terminus
AM352_RS02680	SM00649	Ribosomal protein L11/L12
AM352_RS02685	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM352_RS02685	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM352_RS02815	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM352_RS02835	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS02920	SM00487	DEAD-like helicases superfamily
AM352_RS02920	SM00490	helicase superfamily c-terminal domain
AM352_RS02925	SM00354	helix_turn _helix lactose operon repressor
AM352_RS02940	SM00382	ATPases associated with a variety of cellular activities
AM352_RS02940	SM01086	C-terminal, D2-small domain, of ClpB protein
AM352_RS03025	SM00448	cheY-homologous receiver domain
AM352_RS03025	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS03030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS03030	SM00387	Histidine kinase-like ATPases
AM352_RS03030	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS03040	SM01130	AM352_RS03040
AM352_RS03060	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS03065	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS03080	SM01007	Class II Aldolase and Adducin N-terminal domain
AM352_RS03095	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS03140	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS03195	SM00869	Autotransporter beta-domain
AM352_RS03200	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS03200	SM01134	AM352_RS03200
AM352_RS03215	SM01133	AM352_RS03215
AM352_RS03255	SM01230	AM352_RS03255
AM352_RS03260	SM00091	PAS domain
AM352_RS03260	SM00387	Histidine kinase-like ATPases
AM352_RS03260	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS03265	SM00382	ATPases associated with a variety of cellular activities
AM352_RS03265	SM00448	cheY-homologous receiver domain
AM352_RS03275	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS03295	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM352_RS03295	SM00474	3'-5' exonuclease
AM352_RS03295	SM00475	5'-3' exonuclease
AM352_RS03295	SM00482	DNA polymerase A domain
AM352_RS03305	SM00563	Phosphate acyltransferases
AM352_RS03400	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM352_RS03490	SM00341	Helicase and RNase D C-terminal
AM352_RS03490	SM00487	DEAD-like helicases superfamily
AM352_RS03490	SM00490	helicase superfamily c-terminal domain
AM352_RS03490	SM00956	AM352_RS03490
AM352_RS03545	SM01219	AM352_RS03545
AM352_RS03640	SM00984	UDP binding domain
AM352_RS03665	SM00357	Cold shock protein domain
AM352_RS03665	SM00382	ATPases associated with a variety of cellular activities
AM352_RS03665	SM00959	Rho termination factor, N-terminal domain
AM352_RS03675	SM00487	DEAD-like helicases superfamily
AM352_RS03675	SM00490	helicase superfamily c-terminal domain
AM352_RS03700	SM00100	Cyclic nucleotide-monophosphate binding domain
AM352_RS03750	SM00382	ATPases associated with a variety of cellular activities
AM352_RS03795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS03795	SM00895	AM352_RS03795
AM352_RS03805	SM00354	helix_turn _helix lactose operon repressor
AM352_RS03825	SM00382	ATPases associated with a variety of cellular activities
AM352_RS03845	SM00382	ATPases associated with a variety of cellular activities
AM352_RS03850	SM00327	von Willebrand factor (vWF) type A domain
AM352_RS03860	SM00344	helix_turn_helix ASNC type
AM352_RS03870	SM01228	AM352_RS03870
AM352_RS03915	SM00382	ATPases associated with a variety of cellular activities
AM352_RS03950	SM00382	ATPases associated with a variety of cellular activities
AM352_RS04005	SM01234	AM352_RS04005
AM352_RS04020	SM00382	ATPases associated with a variety of cellular activities
AM352_RS04020	SM00760	Bacterial dnaA protein helix-turn-helix domain
AM352_RS04025	SM00480	DNA polymerase III beta subunit
AM352_RS04035	SM00387	Histidine kinase-like ATPases
AM352_RS04035	SM00433	TopoisomeraseII
AM352_RS04045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS04045	SM00895	AM352_RS04045
AM352_RS04060	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM352_RS04095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS04095	SM00866	AM352_RS04095
AM352_RS04110	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS04195	SM00421	helix_turn_helix, Lux Regulon
AM352_RS04195	SM00448	cheY-homologous receiver domain
AM352_RS04200	SM00387	Histidine kinase-like ATPases
AM352_RS04230	SM00858	AM352_RS04230
AM352_RS04235	SM01130	AM352_RS04235
AM352_RS04240	SM00346	helix_turn_helix isocitrate lyase regulation
AM352_RS04250	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS04270	SM00382	ATPases associated with a variety of cellular activities
AM352_RS04350	SM00829	Enoylreductase
AM352_RS04410	SM00487	DEAD-like helicases superfamily
AM352_RS04410	SM00490	helicase superfamily c-terminal domain
AM352_RS04420	SM00954	Region found in RelA / SpoT proteins
AM352_RS04455	SM00487	DEAD-like helicases superfamily
AM352_RS04455	SM00490	helicase superfamily c-terminal domain
AM352_RS04465	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM352_RS04465	SM00954	Region found in RelA / SpoT proteins
AM352_RS04470	SM01409	AM352_RS04470
AM352_RS04475	SM00072	Guanylate kinase homologues.
AM352_RS04480	SM00532	Ligase N family
AM352_RS04505	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS04590	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM352_RS04590	SM01232	AM352_RS04590
AM352_RS04665	SM00829	Enoylreductase
AM352_RS04695	SM00450	Rhodanese Homology Domain
AM352_RS04715	SM00971	Serine acetyltransferase, N-terminal
AM352_RS04730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS04730	SM00895	AM352_RS04730
AM352_RS04810	SM01007	Class II Aldolase and Adducin N-terminal domain
AM352_RS04820	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM352_RS04850	SM00346	helix_turn_helix isocitrate lyase regulation
AM352_RS04865	SM00642	Alpha-amylase domain
AM352_RS04875	SM00047	Lysozyme subfamily 2
AM352_RS04880	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS04890	SM00382	ATPases associated with a variety of cellular activities
AM352_RS04935	SM00357	Cold shock protein domain
AM352_RS04970	SM00354	helix_turn _helix lactose operon repressor
AM352_RS05040	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05045	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05050	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05105	SM00028	Tetratricopeptide repeats
AM352_RS05110	SM00052	Putative diguanylate phosphodiesterase
AM352_RS05110	SM00267	diguanylate cyclase
AM352_RS05145	SM00052	Putative diguanylate phosphodiesterase
AM352_RS05185	SM01235	AM352_RS05185
AM352_RS05220	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS05270	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05285	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05290	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05320	SM00825	Beta-ketoacyl synthase
AM352_RS05325	SM00822	AM352_RS05325
AM352_RS05335	SM00825	Beta-ketoacyl synthase
AM352_RS05390	SM00563	Phosphate acyltransferases
AM352_RS05465	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05465	SM00962	SRP54-type protein, GTPase domain
AM352_RS05465	SM00963	SRP54-type protein, helical bundle domain
AM352_RS05470	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05515	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05520	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05540	SM00382	ATPases associated with a variety of cellular activities
AM352_RS05595	SM00354	helix_turn _helix lactose operon repressor
AM352_RS05620	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM352_RS05625	SM00642	Alpha-amylase domain
AM352_RS05630	SM00642	Alpha-amylase domain
AM352_RS05655	SM00450	Rhodanese Homology Domain
AM352_RS05665	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS05665	SM01134	AM352_RS05665
AM352_RS05670	SM00421	helix_turn_helix, Lux Regulon
AM352_RS05715	SM00899	AM352_RS05715
AM352_RS05725	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS05725	SM00732	Likely ribonuclease with RNase H fold.
AM352_RS05740	SM00448	cheY-homologous receiver domain
AM352_RS05740	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS05745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS05745	SM00387	Histidine kinase-like ATPases
AM352_RS05745	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS05765	SM00363	S4 RNA-binding domain
AM352_RS05895	SM00869	Autotransporter beta-domain
AM352_RS05955	SM00100	Cyclic nucleotide-monophosphate binding domain
AM352_RS05955	SM00419	helix_turn_helix, cAMP Regulatory protein
AM352_RS06025	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM352_RS06035	SM00382	ATPases associated with a variety of cellular activities
AM352_RS06100	SM00838	Elongation factor G C-terminus
AM352_RS06100	SM00889	Elongation factor G, domain IV
AM352_RS06130	SM01403	AM352_RS06130
AM352_RS06150	SM01382	AM352_RS06150
AM352_RS06150	SM01383	AM352_RS06150
AM352_RS06165	SM00322	K homology RNA-binding domain
AM352_RS06185	SM01374	AM352_RS06185
AM352_RS06190	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM352_RS06255	SM00363	S4 RNA-binding domain
AM352_RS06255	SM01390	AM352_RS06255
AM352_RS06260	SM00662	RNA polymerases D
AM352_RS06275	SM00422	helix_turn_helix, mercury resistance
AM352_RS06380	SM00382	ATPases associated with a variety of cellular activities
AM352_RS06395	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS06440	SM01057	Eukaryotic-type carbonic anhydrase
AM352_RS06460	SM00878	Biotin carboxylase C-terminal domain
AM352_RS06490	SM00829	Enoylreductase
AM352_RS06495	SM00052	Putative diguanylate phosphodiesterase
AM352_RS06495	SM00267	diguanylate cyclase
AM352_RS06525	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS06585	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM352_RS06590	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM352_RS06635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS06635	SM00895	AM352_RS06635
AM352_RS06640	SM01130	AM352_RS06640
AM352_RS06690	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS06695	SM00073	Histidine Phosphotransfer domain
AM352_RS06695	SM00091	PAS domain
AM352_RS06695	SM00387	Histidine kinase-like ATPases
AM352_RS06695	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS06695	SM00448	cheY-homologous receiver domain
AM352_RS06740	SM00382	ATPases associated with a variety of cellular activities
AM352_RS06770	SM00382	ATPases associated with a variety of cellular activities
AM352_RS06845	SM01103	AM352_RS06845
AM352_RS06855	SM00382	ATPases associated with a variety of cellular activities
AM352_RS06895	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS06915	SM01387	AM352_RS06915
AM352_RS06920	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS06920	SM00322	K homology RNA-binding domain
AM352_RS06925	SM00028	Tetratricopeptide repeats
AM352_RS06930	SM00487	DEAD-like helicases superfamily
AM352_RS06930	SM00490	helicase superfamily c-terminal domain
AM352_RS06975	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM352_RS06985	SM00749	bacterial OsmY and nodulation domain
AM352_RS07075	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS07075	SM01134	AM352_RS07075
AM352_RS07080	SM00858	AM352_RS07080
AM352_RS07210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS07210	SM00895	AM352_RS07210
AM352_RS07225	SM00858	AM352_RS07225
AM352_RS07280	SM01038	Beta galactosidase small chain
AM352_RS07285	SM00354	helix_turn _helix lactose operon repressor
AM352_RS07300	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM352_RS07300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS07305	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS07305	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS07320	SM01120	AM352_RS07320
AM352_RS07335	SM00091	PAS domain
AM352_RS07335	SM00382	ATPases associated with a variety of cellular activities
AM352_RS07365	SM00400	zinc finger
AM352_RS07365	SM00493	AM352_RS07365
AM352_RS07365	SM00766	DNA primase DnaG DnaB-binding
AM352_RS07395	SM00988	UreE urease accessory protein, N-terminal domain
AM352_RS07440	SM01207	AM352_RS07440
AM352_RS07445	SM00905	Dihydroneopterin aldolase
AM352_RS07460	SM00287	Bacterial SH3 domain homologues
AM352_RS07465	SM01118	AM352_RS07465
AM352_RS07555	SM00387	Histidine kinase-like ATPases
AM352_RS07555	SM00433	TopoisomeraseII
AM352_RS07560	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS07590	SM00387	Histidine kinase-like ATPases
AM352_RS07590	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS07595	SM00448	cheY-homologous receiver domain
AM352_RS07595	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS07605	SM00434	DNA Topoisomerase IV
AM352_RS07610	SM00563	Phosphate acyltransferases
AM352_RS07620	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS07640	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS07700	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS07700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS07775	SM00829	Enoylreductase
AM352_RS07780	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS07790	SM00422	helix_turn_helix, mercury resistance
AM352_RS07815	SM00421	helix_turn_helix, Lux Regulon
AM352_RS07820	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS07820	SM00387	Histidine kinase-like ATPases
AM352_RS07820	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS07820	SM00448	cheY-homologous receiver domain
AM352_RS07825	SM00421	helix_turn_helix, Lux Regulon
AM352_RS07825	SM00448	cheY-homologous receiver domain
AM352_RS07845	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS07850	SM00869	Autotransporter beta-domain
AM352_RS07890	SM00478	endonuclease III
AM352_RS07890	SM00525	AM352_RS07890
AM352_RS07910	SM00870	AM352_RS07910
AM352_RS07915	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS07925	SM01152	AM352_RS07925
AM352_RS07940	SM00382	ATPases associated with a variety of cellular activities
AM352_RS07945	SM00732	Likely ribonuclease with RNase H fold.
AM352_RS07970	SM00731	SprT homologues.
AM352_RS08020	SM00861	Transketolase, pyrimidine binding domain
AM352_RS08055	SM00382	ATPases associated with a variety of cellular activities
AM352_RS08060	SM00382	ATPases associated with a variety of cellular activities
AM352_RS08085	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM352_RS08195	SM01011	Aminopeptidase P, N-terminal domain
AM352_RS08240	SM01022	AM352_RS08240
AM352_RS08310	SM00257	Lysin motif
AM352_RS08395	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS08455	SM00354	helix_turn _helix lactose operon repressor
AM352_RS08460	SM00354	helix_turn _helix lactose operon repressor
AM352_RS08470	SM00563	Phosphate acyltransferases
AM352_RS08500	SM00927	DNA mismatch repair enzyme MutH
AM352_RS08510	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM352_RS08560	SM00382	ATPases associated with a variety of cellular activities
AM352_RS08570	SM00646	AM352_RS08570
AM352_RS08590	SM00925	MltA specific insert domain
AM352_RS08630	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS08630	SM01134	AM352_RS08630
AM352_RS08660	SM01007	Class II Aldolase and Adducin N-terminal domain
AM352_RS08670	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM352_RS08670	SM00475	5'-3' exonuclease
AM352_RS08735	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM352_RS08740	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM352_RS08750	SM00073	Histidine Phosphotransfer domain
AM352_RS08750	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS08750	SM00387	Histidine kinase-like ATPases
AM352_RS08750	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS08750	SM00448	cheY-homologous receiver domain
AM352_RS08760	SM00954	Region found in RelA / SpoT proteins
AM352_RS08780	SM01192	AM352_RS08780
AM352_RS08780	SM01193	AM352_RS08780
AM352_RS08815	SM00893	Electron transfer flavoprotein domain
AM352_RS08925	SM00257	Lysin motif
AM352_RS08935	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM352_RS08955	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AM352_RS08955	SM00534	ATPase domain of DNA mismatch repair MUTS family
AM352_RS08970	SM00382	ATPases associated with a variety of cellular activities
AM352_RS08990	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM352_RS08990	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09075	SM00354	helix_turn _helix lactose operon repressor
AM352_RS09095	SM00849	Metallo-beta-lactamase superfamily
AM352_RS09100	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM352_RS09100	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09110	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS09110	SM01134	AM352_RS09110
AM352_RS09145	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09165	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09175	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM352_RS09245	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM352_RS09275	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09310	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS09335	SM00528	Domain in histone-like proteins of HNS family
AM352_RS09340	SM00450	Rhodanese Homology Domain
AM352_RS09345	SM00257	Lysin motif
AM352_RS09345	SM00749	bacterial OsmY and nodulation domain
AM352_RS09350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS09350	SM00895	AM352_RS09350
AM352_RS09400	SM00448	cheY-homologous receiver domain
AM352_RS09400	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS09405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS09405	SM00387	Histidine kinase-like ATPases
AM352_RS09405	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS09450	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09480	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS09490	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09530	SM01007	Class II Aldolase and Adducin N-terminal domain
AM352_RS09640	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS09750	SM01091	Transporter associated domain
AM352_RS09760	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09760	SM00962	SRP54-type protein, GTPase domain
AM352_RS09760	SM00963	SRP54-type protein, helical bundle domain
AM352_RS09800	SM00267	diguanylate cyclase
AM352_RS09825	SM00830	Chorismate mutase type II
AM352_RS09830	SM00830	Chorismate mutase type II
AM352_RS09850	SM00363	S4 RNA-binding domain
AM352_RS09860	SM00382	ATPases associated with a variety of cellular activities
AM352_RS09860	SM01086	C-terminal, D2-small domain, of ClpB protein
AM352_RS09895	SM00155	Phospholipase D. Active site motifs.
AM352_RS09900	SM00881	CoA binding domain
AM352_RS09905	SM01144	AM352_RS09905
AM352_RS09915	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM352_RS09920	SM00986	Uracil DNA glycosylase superfamily
AM352_RS09920	SM00987	UreE urease accessory protein, C-terminal domain 
AM352_RS09930	SM00487	DEAD-like helicases superfamily
AM352_RS09930	SM00490	helicase superfamily c-terminal domain
AM352_RS09980	SM00358	Double-stranded RNA binding motif
AM352_RS09980	SM00535	Ribonuclease III family
AM352_RS10030	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS10040	SM01211	AM352_RS10040
AM352_RS10060	SM00387	Histidine kinase-like ATPases
AM352_RS10060	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS10070	SM00382	ATPases associated with a variety of cellular activities
AM352_RS10070	SM00448	cheY-homologous receiver domain
AM352_RS10075	SM00938	Nitrogen regulatory protein P-II
AM352_RS10100	SM00028	Tetratricopeptide repeats
AM352_RS10165	SM00271	DnaJ molecular chaperone homology domain
AM352_RS10195	SM00450	Rhodanese Homology Domain
AM352_RS10200	SM01359	AM352_RS10200
AM352_RS10200	SM01360	AM352_RS10200
AM352_RS10210	SM00562	AM352_RS10210
AM352_RS10225	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS10245	SM00564	beta-propeller repeat
AM352_RS10270	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM352_RS10270	SM01240	AM352_RS10270
AM352_RS10335	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS10345	SM00052	Putative diguanylate phosphodiesterase
AM352_RS10345	SM00267	diguanylate cyclase
AM352_RS10460	SM01130	AM352_RS10460
AM352_RS10515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS10515	SM00387	Histidine kinase-like ATPases
AM352_RS10535	SM00861	Transketolase, pyrimidine binding domain
AM352_RS10550	SM00919	Malic enzyme, NAD binding domain
AM352_RS10550	SM01274	AM352_RS10550
AM352_RS10555	SM00877	AM352_RS10555
AM352_RS10580	SM00877	AM352_RS10580
AM352_RS10625	SM00877	AM352_RS10625
AM352_RS10630	SM00877	AM352_RS10630
AM352_RS10635	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS10645	SM00646	AM352_RS10645
AM352_RS10700	SM00822	AM352_RS10700
AM352_RS10720	SM00382	ATPases associated with a variety of cellular activities
AM352_RS10735	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS10775	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AM352_RS10780	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM352_RS10780	SM00292	breast cancer carboxy-terminal domain
AM352_RS10780	SM00532	Ligase N family
AM352_RS10865	SM00052	Putative diguanylate phosphodiesterase
AM352_RS10865	SM00267	diguanylate cyclase
AM352_RS10930	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS10935	SM00448	cheY-homologous receiver domain
AM352_RS10935	SM00850	LytTr DNA-binding domain
AM352_RS10940	SM00387	Histidine kinase-like ATPases
AM352_RS10960	SM00869	Autotransporter beta-domain
AM352_RS10965	SM00421	helix_turn_helix, Lux Regulon
AM352_RS10970	SM00052	Putative diguanylate phosphodiesterase
AM352_RS11005	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS11010	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM352_RS11015	SM00052	Putative diguanylate phosphodiesterase
AM352_RS11015	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM352_RS11015	SM00091	PAS domain
AM352_RS11015	SM00267	diguanylate cyclase
AM352_RS11020	SM00267	diguanylate cyclase
AM352_RS11080	SM00463	Small MutS-related domain
AM352_RS11120	SM00825	Beta-ketoacyl synthase
AM352_RS11135	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS11160	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM352_RS11215	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS11220	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS11235	SM00382	ATPases associated with a variety of cellular activities
AM352_RS11250	SM00905	Dihydroneopterin aldolase
AM352_RS11270	SM00354	helix_turn _helix lactose operon repressor
AM352_RS11295	SM00861	Transketolase, pyrimidine binding domain
AM352_RS11340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM352_RS11375	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AM352_RS11380	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS11380	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AM352_RS11420	SM00260	Two component signalling adaptor domain
AM352_RS11420	SM00448	cheY-homologous receiver domain
AM352_RS11425	SM00849	Metallo-beta-lactamase superfamily
AM352_RS11460	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM352_RS11470	SM01060	AM352_RS11470
AM352_RS11480	SM00852	Probable molybdopterin binding domain
AM352_RS11530	SM00434	DNA Topoisomerase IV
AM352_RS11545	SM00882	Coenzyme A transferase
AM352_RS11550	SM00882	Coenzyme A transferase
AM352_RS11555	SM00382	ATPases associated with a variety of cellular activities
AM352_RS11555	SM00448	cheY-homologous receiver domain
AM352_RS11560	SM00091	PAS domain
AM352_RS11560	SM00387	Histidine kinase-like ATPases
AM352_RS11560	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS11565	SM00387	Histidine kinase-like ATPases
AM352_RS11565	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS11565	SM00448	cheY-homologous receiver domain
AM352_RS11570	SM00421	helix_turn_helix, Lux Regulon
AM352_RS11570	SM00448	cheY-homologous receiver domain
AM352_RS11575	SM00387	Histidine kinase-like ATPases
AM352_RS11600	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS11610	SM00382	ATPases associated with a variety of cellular activities
AM352_RS11615	SM00924	MgtE intracellular N domain
AM352_RS11640	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS11665	SM00382	ATPases associated with a variety of cellular activities
AM352_RS11705	SM00421	helix_turn_helix, Lux Regulon
AM352_RS11705	SM00448	cheY-homologous receiver domain
AM352_RS11740	SM00487	DEAD-like helicases superfamily
AM352_RS11740	SM00490	helicase superfamily c-terminal domain
AM352_RS11745	SM00363	S4 RNA-binding domain
AM352_RS11760	SM00382	ATPases associated with a variety of cellular activities
AM352_RS11780	SM00052	Putative diguanylate phosphodiesterase
AM352_RS11795	SM00014	Acid phosphatase homologues
AM352_RS11800	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AM352_RS11815	SM00841	Elongation factor P, C-terminal
AM352_RS11815	SM01185	AM352_RS11815
AM352_RS11865	SM00518	AP endonuclease family 2
AM352_RS11905	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS11930	SM00354	helix_turn _helix lactose operon repressor
AM352_RS11940	SM00382	ATPases associated with a variety of cellular activities
AM352_RS12040	SM01217	AM352_RS12040
AM352_RS12055	SM00382	ATPases associated with a variety of cellular activities
AM352_RS12070	SM00422	helix_turn_helix, mercury resistance
AM352_RS12075	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM352_RS12080	SM00448	cheY-homologous receiver domain
AM352_RS12080	SM00850	LytTr DNA-binding domain
AM352_RS12140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS12140	SM00866	AM352_RS12140
AM352_RS12160	SM01133	AM352_RS12160
AM352_RS12175	SM00354	helix_turn _helix lactose operon repressor
AM352_RS12205	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AM352_RS12210	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS12225	SM00448	cheY-homologous receiver domain
AM352_RS12225	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS12230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS12230	SM00387	Histidine kinase-like ATPases
AM352_RS12230	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS12265	SM00478	endonuclease III
AM352_RS12265	SM01009	AlkA N-terminal domain
AM352_RS12270	SM00052	Putative diguanylate phosphodiesterase
AM352_RS12270	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM352_RS12270	SM00091	PAS domain
AM352_RS12270	SM00267	diguanylate cyclase
AM352_RS12290	SM01091	Transporter associated domain
AM352_RS12305	SM00226	Low molecular weight phosphatase family
AM352_RS12440	SM01350	AM352_RS12440
AM352_RS12450	SM00984	UDP binding domain
AM352_RS12525	SM00479	AM352_RS12525
AM352_RS12530	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM352_RS12535	SM00871	Bacterial transcription activator, effector binding domain
AM352_RS12565	SM00877	AM352_RS12565
AM352_RS12570	SM00877	AM352_RS12570
AM352_RS12610	SM00877	AM352_RS12610
AM352_RS12615	SM00877	AM352_RS12615
AM352_RS12645	SM00877	AM352_RS12645
AM352_RS12650	SM00877	AM352_RS12650
AM352_RS12660	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS12740	SM00382	ATPases associated with a variety of cellular activities
AM352_RS12805	SM00903	Flavin reductase like domain
AM352_RS12855	SM00382	ATPases associated with a variety of cellular activities
AM352_RS12895	SM00382	ATPases associated with a variety of cellular activities
AM352_RS12965	SM00052	Putative diguanylate phosphodiesterase
AM352_RS12970	SM00421	helix_turn_helix, Lux Regulon
AM352_RS12995	SM01006	Siderophore biosynthesis protein domain
AM352_RS13020	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM352_RS13050	SM00267	diguanylate cyclase
AM352_RS13065	SM00421	helix_turn_helix, Lux Regulon
AM352_RS13115	SM00382	ATPases associated with a variety of cellular activities
AM352_RS13155	SM00642	Alpha-amylase domain
AM352_RS13180	SM00028	Tetratricopeptide repeats
AM352_RS13220	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS13220	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM352_RS13235	SM00382	ATPases associated with a variety of cellular activities
AM352_RS13240	SM00421	helix_turn_helix, Lux Regulon
AM352_RS13250	SM00421	helix_turn_helix, Lux Regulon
AM352_RS13250	SM00448	cheY-homologous receiver domain
AM352_RS13255	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM352_RS13255	SM00465	GIY-YIG type nucleases (URI domain)
AM352_RS13335	SM00382	ATPases associated with a variety of cellular activities
AM352_RS13385	SM00073	Histidine Phosphotransfer domain
AM352_RS13385	SM00260	Two component signalling adaptor domain
AM352_RS13385	SM00387	Histidine kinase-like ATPases
AM352_RS13385	SM01231	AM352_RS13385
AM352_RS13390	SM00260	Two component signalling adaptor domain
AM352_RS13400	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS13400	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS13400	SM00319	Homologues of the ligand binding domain of Tar
AM352_RS13405	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS13405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS13405	SM00319	Homologues of the ligand binding domain of Tar
AM352_RS13410	SM00138	Methyltransferase, chemotaxis proteins 
AM352_RS13415	SM00448	cheY-homologous receiver domain
AM352_RS13420	SM00448	cheY-homologous receiver domain
AM352_RS13485	SM00836	DALR anticodon binding domain
AM352_RS13485	SM01016	Arginyl tRNA synthetase N terminal dom
AM352_RS13550	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM352_RS13555	SM00382	ATPases associated with a variety of cellular activities
AM352_RS13565	SM00382	ATPases associated with a variety of cellular activities
AM352_RS13575	SM00257	Lysin motif
AM352_RS13635	SM00479	AM352_RS13635
AM352_RS13705	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM352_RS13710	SM00945	ProQ/FINO family
AM352_RS13715	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM352_RS13715	SM00245	tail specific protease
AM352_RS13730	SM00346	helix_turn_helix isocitrate lyase regulation
AM352_RS13755	SM00357	Cold shock protein domain
AM352_RS13805	SM01091	Transporter associated domain
AM352_RS13810	SM00052	Putative diguanylate phosphodiesterase
AM352_RS13840	SM00487	DEAD-like helicases superfamily
AM352_RS13840	SM00491	AM352_RS13840
AM352_RS13865	SM00341	Helicase and RNase D C-terminal
AM352_RS13865	SM00474	3'-5' exonuclease
AM352_RS13870	SM01329	AM352_RS13870
AM352_RS13925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS13940	SM01005	Alanine racemase, C-terminal domain
AM352_RS13945	SM01091	Transporter associated domain
AM352_RS13990	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14015	SM01120	AM352_RS14015
AM352_RS14060	SM00421	helix_turn_helix, Lux Regulon
AM352_RS14090	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS14105	SM00829	Enoylreductase
AM352_RS14120	SM00354	helix_turn _helix lactose operon repressor
AM352_RS14135	SM00829	Enoylreductase
AM352_RS14140	SM00829	Enoylreductase
AM352_RS14155	SM00824	Thioesterase
AM352_RS14165	SM00822	AM352_RS14165
AM352_RS14165	SM00823	Phosphopantetheine attachment site
AM352_RS14165	SM00824	Thioesterase
AM352_RS14165	SM00825	Beta-ketoacyl synthase
AM352_RS14165	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM352_RS14170	SM00823	Phosphopantetheine attachment site
AM352_RS14175	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS14180	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14185	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14245	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14270	SM01400	AM352_RS14270
AM352_RS14290	SM00937	AM352_RS14290
AM352_RS14335	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS14335	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS14345	SM01012	AM352_RS14345
AM352_RS14360	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14370	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS14380	SM00421	helix_turn_helix, Lux Regulon
AM352_RS14380	SM00448	cheY-homologous receiver domain
AM352_RS14385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS14385	SM00387	Histidine kinase-like ATPases
AM352_RS14400	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS14450	SM00448	cheY-homologous receiver domain
AM352_RS14460	SM00528	Domain in histone-like proteins of HNS family
AM352_RS14500	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14505	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14515	SM00155	Phospholipase D. Active site motifs.
AM352_RS14555	SM00267	diguanylate cyclase
AM352_RS14590	SM00481	DNA polymerase alpha chain like domain
AM352_RS14600	SM00363	S4 RNA-binding domain
AM352_RS14610	SM00822	AM352_RS14610
AM352_RS14625	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM352_RS14625	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM352_RS14625	SM00493	AM352_RS14625
AM352_RS14650	SM00014	Acid phosphatase homologues
AM352_RS14660	SM00028	Tetratricopeptide repeats
AM352_RS14665	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM352_RS14680	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS14680	SM01134	AM352_RS14680
AM352_RS14695	SM00052	Putative diguanylate phosphodiesterase
AM352_RS14695	SM00091	PAS domain
AM352_RS14695	SM00267	diguanylate cyclase
AM352_RS14700	SM00357	Cold shock protein domain
AM352_RS14700	SM00955	AM352_RS14700
AM352_RS14730	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14735	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14760	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14795	SM00091	PAS domain
AM352_RS14795	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14805	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM352_RS14840	SM00100	Cyclic nucleotide-monophosphate binding domain
AM352_RS14840	SM00419	helix_turn_helix, cAMP Regulatory protein
AM352_RS14855	SM00463	Small MutS-related domain
AM352_RS14860	SM00091	PAS domain
AM352_RS14860	SM00267	diguanylate cyclase
AM352_RS14875	SM00487	DEAD-like helicases superfamily
AM352_RS14875	SM00490	helicase superfamily c-terminal domain
AM352_RS14900	SM00890	Domain of unknown function
AM352_RS14925	SM00421	helix_turn_helix, Lux Regulon
AM352_RS14960	SM00382	ATPases associated with a variety of cellular activities
AM352_RS14960	SM00487	DEAD-like helicases superfamily
AM352_RS14960	SM00490	helicase superfamily c-terminal domain
AM352_RS14960	SM00847	Helicase associated domain (HA2)  Add an annotation
AM352_RS15005	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM352_RS15020	SM00829	Enoylreductase
AM352_RS15030	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS15030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS15030	SM00319	Homologues of the ligand binding domain of Tar
AM352_RS15040	SM01131	AM352_RS15040
AM352_RS15045	SM01150	AM352_RS15045
AM352_RS15100	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS15110	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS15130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS15185	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS15190	SM00829	Enoylreductase
AM352_RS15220	SM00267	diguanylate cyclase
AM352_RS15225	SM00903	Flavin reductase like domain
AM352_RS15255	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS15295	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS15315	SM00919	Malic enzyme, NAD binding domain
AM352_RS15315	SM01274	AM352_RS15315
AM352_RS15330	SM00382	ATPases associated with a variety of cellular activities
AM352_RS15335	SM00382	ATPases associated with a variety of cellular activities
AM352_RS15365	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS15365	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS15370	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS15385	SM00534	ATPase domain of DNA mismatch repair MUTS family
AM352_RS15390	SM00534	ATPase domain of DNA mismatch repair MUTS family
AM352_RS15395	SM01192	AM352_RS15395
AM352_RS15395	SM01193	AM352_RS15395
AM352_RS15450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS15450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS15450	SM00319	Homologues of the ligand binding domain of Tar
AM352_RS15480	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM352_RS15485	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS15505	SM00382	ATPases associated with a variety of cellular activities
AM352_RS15540	SM00267	diguanylate cyclase
AM352_RS15560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS15560	SM00895	AM352_RS15560
AM352_RS15580	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM352_RS15610	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS15615	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS15650	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM352_RS15650	SM00382	ATPases associated with a variety of cellular activities
AM352_RS15725	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AM352_RS15725	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AM352_RS15755	SM00448	cheY-homologous receiver domain
AM352_RS15755	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS15760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS15760	SM00387	Histidine kinase-like ATPases
AM352_RS15760	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS15790	SM00354	helix_turn _helix lactose operon repressor
AM352_RS15850	SM00900	AM352_RS15850
AM352_RS15860	SM00478	endonuclease III
AM352_RS15860	SM00525	AM352_RS15860
AM352_RS15880	SM00363	S4 RNA-binding domain
AM352_RS15905	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM352_RS15955	SM00479	AM352_RS15955
AM352_RS15995	SM00354	helix_turn _helix lactose operon repressor
AM352_RS16065	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS16065	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM352_RS16070	SM00382	ATPases associated with a variety of cellular activities
AM352_RS16105	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AM352_RS16130	SM00382	ATPases associated with a variety of cellular activities
AM352_RS16130	SM00930	AM352_RS16130
AM352_RS16135	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM352_RS16160	SM00257	Lysin motif
AM352_RS16180	SM00382	ATPases associated with a variety of cellular activities
AM352_RS16200	SM00849	Metallo-beta-lactamase superfamily
AM352_RS16265	SM00382	ATPases associated with a variety of cellular activities
AM352_RS16285	SM00411	bacterial (prokaryotic) histone like domain
AM352_RS16290	SM00873	B3/4 domain
AM352_RS16290	SM00874	tRNA synthetase B5 domain
AM352_RS16290	SM00896	Ferredoxin-fold anticodon binding domain
AM352_RS16320	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM352_RS16390	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS16485	SM00382	ATPases associated with a variety of cellular activities
AM352_RS16490	SM00450	Rhodanese Homology Domain
AM352_RS16515	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AM352_RS16520	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM352_RS16520	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM352_RS16520	SM00493	AM352_RS16520
AM352_RS16545	SM00870	AM352_RS16545
AM352_RS16570	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM352_RS16585	SM00763	PrkA AAA domain
AM352_RS16600	SM00267	diguanylate cyclase
AM352_RS16615	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS16655	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS16710	SM01329	AM352_RS16710
AM352_RS16820	SM00635	Bacterial Ig-like domain 2
AM352_RS17030	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS17100	SM00448	cheY-homologous receiver domain
AM352_RS17100	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS17105	SM00387	Histidine kinase-like ATPases
AM352_RS17110	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AM352_RS17120	SM00382	ATPases associated with a variety of cellular activities
AM352_RS17155	SM00382	ATPases associated with a variety of cellular activities
AM352_RS17170	SM00487	DEAD-like helicases superfamily
AM352_RS17170	SM00490	helicase superfamily c-terminal domain
AM352_RS17170	SM00982	AM352_RS17170
AM352_RS17170	SM01058	CarD-like/TRCF domain
AM352_RS17175	SM00257	Lysin motif
AM352_RS17265	SM00825	Beta-ketoacyl synthase
AM352_RS17275	SM00822	AM352_RS17275
AM352_RS17280	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM352_RS17310	SM00363	S4 RNA-binding domain
AM352_RS17325	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS17340	SM00047	Lysozyme subfamily 2
AM352_RS17385	SM00858	AM352_RS17385
AM352_RS17465	SM00867	YceI-like domain 
AM352_RS17470	SM00450	Rhodanese Homology Domain
AM352_RS17510	SM00155	Phospholipase D. Active site motifs.
AM352_RS17515	SM00506	Appr-1"-p processing enzyme
AM352_RS17545	SM00421	helix_turn_helix, Lux Regulon
AM352_RS17575	SM00481	DNA polymerase alpha chain like domain
AM352_RS17650	SM00382	ATPases associated with a variety of cellular activities
AM352_RS17685	SM00900	AM352_RS17685
AM352_RS17710	SM00271	DnaJ molecular chaperone homology domain
AM352_RS17720	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS17735	SM00382	ATPases associated with a variety of cellular activities
AM352_RS17745	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS17770	SM00382	ATPases associated with a variety of cellular activities
AM352_RS17800	SM00448	cheY-homologous receiver domain
AM352_RS17805	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS17805	SM00387	Histidine kinase-like ATPases
AM352_RS17805	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS17840	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AM352_RS17845	SM00992	Hemimethylated DNA-binding protein YccV like
AM352_RS17850	SM00881	CoA binding domain
AM352_RS17860	SM00851	MGS-like domain
AM352_RS17935	SM00382	ATPases associated with a variety of cellular activities
AM352_RS17940	SM00981	AM352_RS17940
AM352_RS17970	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS17985	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18020	SM00849	Metallo-beta-lactamase superfamily
AM352_RS18095	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18100	SM00849	Metallo-beta-lactamase superfamily
AM352_RS18105	SM00411	bacterial (prokaryotic) histone like domain
AM352_RS18110	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS18175	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM352_RS18185	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18195	SM00843	AM352_RS18195
AM352_RS18200	SM00344	helix_turn_helix ASNC type
AM352_RS18215	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18220	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18235	SM00316	Ribosomal protein S1-like RNA-binding domain
AM352_RS18265	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18265	SM01086	C-terminal, D2-small domain, of ClpB protein
AM352_RS18275	SM00357	Cold shock protein domain
AM352_RS18280	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18340	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AM352_RS18340	SM00495	Chitin-binding domain type 3
AM352_RS18350	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AM352_RS18350	SM00495	Chitin-binding domain type 3
AM352_RS18350	SM00636	AM352_RS18350
AM352_RS18400	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18430	SM00644	AM352_RS18430
AM352_RS18445	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18450	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS18450	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM352_RS18465	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS18465	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM352_RS18470	SM00387	Histidine kinase-like ATPases
AM352_RS18470	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS18475	SM00448	cheY-homologous receiver domain
AM352_RS18475	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS18500	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18570	SM00014	Acid phosphatase homologues
AM352_RS18575	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM352_RS18575	SM01134	AM352_RS18575
AM352_RS18580	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM352_RS18600	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS18620	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18630	SM00852	Probable molybdopterin binding domain
AM352_RS18680	SM00354	helix_turn _helix lactose operon repressor
AM352_RS18700	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18715	SM00529	Helix-turn-helix diphteria tox regulatory element
AM352_RS18745	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS18745	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM352_RS18755	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18815	SM00487	DEAD-like helicases superfamily
AM352_RS18815	SM00488	AM352_RS18815
AM352_RS18815	SM00491	AM352_RS18815
AM352_RS18820	SM00487	DEAD-like helicases superfamily
AM352_RS18820	SM00490	helicase superfamily c-terminal domain
AM352_RS18835	SM00382	ATPases associated with a variety of cellular activities
AM352_RS18860	SM00155	Phospholipase D. Active site motifs.
AM352_RS18890	SM00852	Probable molybdopterin binding domain
AM352_RS18895	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS18905	SM00487	DEAD-like helicases superfamily
AM352_RS18905	SM00490	helicase superfamily c-terminal domain
AM352_RS18930	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS18930	SM00876	Biotin and Thiamin Synthesis associated domain
AM352_RS18955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS18955	SM00866	AM352_RS18955
AM352_RS19005	SM00382	ATPases associated with a variety of cellular activities
AM352_RS19030	SM00382	ATPases associated with a variety of cellular activities
AM352_RS19055	SM00855	Phosphoglycerate mutase family
AM352_RS19060	SM00382	ATPases associated with a variety of cellular activities
AM352_RS19190	SM00872	Alpha mannosidase, middle domain
AM352_RS19200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS19200	SM00866	AM352_RS19200
AM352_RS19260	SM00881	CoA binding domain
AM352_RS19275	SM00861	Transketolase, pyrimidine binding domain
AM352_RS19355	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS19360	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM352_RS19360	SM01232	AM352_RS19360
AM352_RS19385	SM00797	Allophanate hydrolase subunit 2
AM352_RS19390	SM00796	Allophanate hydrolase subunit 1
AM352_RS19435	SM00387	Histidine kinase-like ATPases
AM352_RS19435	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS19440	SM00448	cheY-homologous receiver domain
AM352_RS19440	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS19585	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS19600	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM352_RS19600	SM01091	Transporter associated domain
AM352_RS19610	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS19625	SM00382	ATPases associated with a variety of cellular activities
AM352_RS19665	SM00855	Phosphoglycerate mutase family
AM352_RS19695	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM352_RS19715	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS19735	SM00357	Cold shock protein domain
AM352_RS19750	SM00448	cheY-homologous receiver domain
AM352_RS19755	SM00091	PAS domain
AM352_RS19755	SM00387	Histidine kinase-like ATPases
AM352_RS19760	SM00764	Citrate lyase ligase C-terminal domain
AM352_RS19840	SM00470	ParB-like nuclease domain
AM352_RS19870	SM00822	AM352_RS19870
AM352_RS19910	SM00382	ATPases associated with a variety of cellular activities
AM352_RS19920	SM00824	Thioesterase
AM352_RS19925	SM00923	MbtH-like protein
AM352_RS19990	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS19995	SM00849	Metallo-beta-lactamase superfamily
AM352_RS20040	SM00966	SpoVT / AbrB like domain 
AM352_RS20070	SM00382	ATPases associated with a variety of cellular activities
AM352_RS20080	SM00354	helix_turn _helix lactose operon repressor
AM352_RS20095	SM00318	Staphylococcal nuclease homologues
AM352_RS20140	SM00422	helix_turn_helix, mercury resistance
AM352_RS20165	SM00422	helix_turn_helix, mercury resistance
AM352_RS20190	SM00857	Resolvase, N terminal domain
AM352_RS20295	SM00470	ParB-like nuclease domain
AM352_RS20305	SM00857	Resolvase, N terminal domain
AM352_RS20330	SM00479	AM352_RS20330
AM352_RS20450	SM00857	Resolvase, N terminal domain
AM352_RS20495	SM00354	helix_turn _helix lactose operon repressor
AM352_RS20540	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS20540	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS20570	SM00387	Histidine kinase-like ATPases
AM352_RS20570	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS20575	SM00448	cheY-homologous receiver domain
AM352_RS20575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM352_RS20660	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM352_RS20660	SM00091	PAS domain
AM352_RS20660	SM00267	diguanylate cyclase
AM352_RS20660	SM01079	AM352_RS20660
AM352_RS20730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM352_RS20730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS20770	SM00857	Resolvase, N terminal domain
AM352_RS20790	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS20835	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS20835	SM00895	AM352_RS20835
AM352_RS20990	SM00857	Resolvase, N terminal domain
AM352_RS21050	SM00857	Resolvase, N terminal domain
AM352_RS21100	SM00857	Resolvase, N terminal domain
AM352_RS21135	SM00530	Helix-turn-helix XRE-family like proteins 
AM352_RS21150	SM00354	helix_turn _helix lactose operon repressor
AM352_RS21210	SM00448	cheY-homologous receiver domain
AM352_RS21210	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS21215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM352_RS21215	SM00387	Histidine kinase-like ATPases
AM352_RS21215	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS21230	SM00421	helix_turn_helix, Lux Regulon
AM352_RS21245	SM00421	helix_turn_helix, Lux Regulon
AM352_RS21245	SM00448	cheY-homologous receiver domain
AM352_RS21290	SM00840	AM352_RS21290
AM352_RS21310	SM01001	AIR carboxylase
AM352_RS21320	SM00450	Rhodanese Homology Domain
AM352_RS21330	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21330	SM00930	AM352_RS21330
AM352_RS21350	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21375	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21380	SM00244	prohibitin homologues
AM352_RS21390	SM00422	helix_turn_helix, mercury resistance
AM352_RS21405	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM352_RS21425	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21435	SM00354	helix_turn _helix lactose operon repressor
AM352_RS21510	SM00387	Histidine kinase-like ATPases
AM352_RS21515	SM00493	AM352_RS21515
AM352_RS21525	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21590	SM01266	AM352_RS21590
AM352_RS21610	SM00052	Putative diguanylate phosphodiesterase
AM352_RS21625	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS21665	SM00938	Nitrogen regulatory protein P-II
AM352_RS21675	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21680	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21685	SM00344	helix_turn_helix ASNC type
AM352_RS21725	SM00411	bacterial (prokaryotic) histone like domain
AM352_RS21730	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21730	SM00464	Found in ATP-dependent protease La (LON)
AM352_RS21735	SM00382	ATPases associated with a variety of cellular activities
AM352_RS21735	SM00994	ClpX C4-type zinc finger
AM352_RS21735	SM01086	C-terminal, D2-small domain, of ClpB protein
AM352_RS21820	SM00981	AM352_RS21820
AM352_RS21835	SM00861	Transketolase, pyrimidine binding domain
AM352_RS21885	SM00507	HNH nucleases
AM352_RS21900	SM01323	AM352_RS21900
AM352_RS21940	SM00642	Alpha-amylase domain
AM352_RS21955	SM00091	PAS domain
AM352_RS21955	SM00387	Histidine kinase-like ATPases
AM352_RS21955	SM00388	His Kinase A (phosphoacceptor) domain
AM352_RS21960	SM00448	cheY-homologous receiver domain
AM352_RS21960	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS22015	SM00267	diguanylate cyclase
AM352_RS22025	SM00098	Alkaline phosphatase homologues
AM352_RS22035	SM00354	helix_turn _helix lactose operon repressor
AM352_RS22095	SM00869	Autotransporter beta-domain
AM352_RS22100	SM01004	Delta-aminolevulinic acid dehydratase
AM352_RS22105	SM00563	Phosphate acyltransferases
AM352_RS22120	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22125	SM00062	Bacterial periplasmic substrate-binding proteins
AM352_RS22130	SM00421	helix_turn_helix, Lux Regulon
AM352_RS22130	SM00448	cheY-homologous receiver domain
AM352_RS22135	SM00387	Histidine kinase-like ATPases
AM352_RS22155	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22165	SM00354	helix_turn _helix lactose operon repressor
AM352_RS22170	SM01038	Beta galactosidase small chain
AM352_RS22195	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22255	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22345	SM00862	Transcriptional regulatory protein, C terminal
AM352_RS22415	SM00858	AM352_RS22415
AM352_RS22460	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22470	SM00924	MgtE intracellular N domain
AM352_RS22485	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22535	SM00052	Putative diguanylate phosphodiesterase
AM352_RS22560	SM00342	helix_turn_helix, arabinose operon control protein
AM352_RS22595	SM00052	Putative diguanylate phosphodiesterase
AM352_RS22630	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22660	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22665	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22705	SM00354	helix_turn _helix lactose operon repressor
AM352_RS22710	SM00640	Glycosyl hydrolases family 32
AM352_RS22830	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AM352_RS22895	SM00479	AM352_RS22895
AM352_RS22910	SM00849	Metallo-beta-lactamase superfamily
AM352_RS22915	SM00257	Lysin motif
AM352_RS22970	SM00382	ATPases associated with a variety of cellular activities
AM352_RS22970	SM00930	AM352_RS22970
AM352_RS23010	SM01322	AM352_RS23010
AM352_RS23025	SM00977	TilS substrate C-terminal domain
AM352_RS23045	SM00481	DNA polymerase alpha chain like domain
AM352_RS23075	SM00935	Outer membrane protein (OmpH-like)
AM352_RS23085	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM352_RS23135	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM352_RS23155	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM352_RS23165	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM352_RS23210	SM00382	ATPases associated with a variety of cellular activities
AM352_RS23225	SM00487	DEAD-like helicases superfamily
AM352_RS23225	SM00490	helicase superfamily c-terminal domain
AM352_RS23225	SM00847	Helicase associated domain (HA2)  Add an annotation
AM352_RS23320	SM00382	ATPases associated with a variety of cellular activities
AM352_RS23325	SM00947	Carbonic anhydrase
AM352_RS23335	SM00564	beta-propeller repeat
AM352_RS23400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM352_RS23400	SM00895	AM352_RS23400
AM352_RS23425	SM00644	AM352_RS23425
AM352_RS23450	SM01240	AM352_RS23450
AM352_RS23475	SM00957	SecA DEAD-like domain
AM352_RS23475	SM00958	SecA preprotein cross-linking domain
AM352_RS23490	SM00864	Tubulin/FtsZ family, GTPase domain
AM352_RS23490	SM00865	Tubulin/FtsZ family, C-terminal domain
AM352_RS23495	SM00842	Cell division protein FtsA
AM352_RS23620	SM00470	ParB-like nuclease domain
AM352_RS23830	SM00671	Sel1-like repeats.
AM352_RS23855	SM00945	ProQ/FINO family
AM352_RS23990	SM00470	ParB-like nuclease domain
AM352_RS24195	SM00530	Helix-turn-helix XRE-family like proteins 
