CMS_RS00005 SM00382 ATPases associated with a variety of cellular activities CMS_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CMS_RS00010 SM00480 DNA polymerase III beta subunit CMS_RS00020 SM01350 CMS_RS00020 CMS_RS00035 SM00387 Histidine kinase-like ATPases CMS_RS00035 SM00433 TopoisomeraseII CMS_RS00040 SM00434 DNA Topoisomerase IV CMS_RS00095 SM00220 Serine/Threonine protein kinases, catalytic domain CMS_RS00095 SM00740 CMS_RS00095 CMS_RS00100 SM00220 Serine/Threonine protein kinases, catalytic domain CMS_RS00115 SM00331 Sigma factor PP2C-like phosphatases CMS_RS00115 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CMS_RS00120 SM00240 Forkhead associated domain CMS_RS00125 SM00240 Forkhead associated domain CMS_RS00145 SM00421 helix_turn_helix, Lux Regulon CMS_RS00145 SM00448 cheY-homologous receiver domain CMS_RS00165 SM00833 Cobalamin synthesis protein cobW C-terminal domain CMS_RS00170 SM00487 DEAD-like helicases superfamily CMS_RS00170 SM00490 helicase superfamily c-terminal domain CMS_RS00250 SM00354 helix_turn _helix lactose operon repressor CMS_RS00270 SM00813 Alpha-L-arabinofuranosidase C-terminus CMS_RS00280 SM00341 Helicase and RNase D C-terminal CMS_RS00280 SM00487 DEAD-like helicases superfamily CMS_RS00280 SM00490 helicase superfamily c-terminal domain CMS_RS00280 SM00956 CMS_RS00280 CMS_RS00305 SM00382 ATPases associated with a variety of cellular activities CMS_RS00310 SM00382 ATPases associated with a variety of cellular activities CMS_RS00320 SM01011 Aminopeptidase P, N-terminal domain CMS_RS00340 SM01130 CMS_RS00340 CMS_RS00395 SM00710 Parallel beta-helix repeats CMS_RS00400 SM00710 Parallel beta-helix repeats CMS_RS00435 SM00633 Glycosyl hydrolase family 10 CMS_RS00450 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS00465 SM00506 Appr-1"-p processing enzyme CMS_RS00510 SM00382 ATPases associated with a variety of cellular activities CMS_RS00530 SM00905 Dihydroneopterin aldolase CMS_RS00570 SM00382 ATPases associated with a variety of cellular activities CMS_RS00570 SM01086 C-terminal, D2-small domain, of ClpB protein CMS_RS00595 SM00421 helix_turn_helix, Lux Regulon CMS_RS00600 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS00610 SM00354 helix_turn _helix lactose operon repressor CMS_RS00630 SM00382 ATPases associated with a variety of cellular activities CMS_RS00645 SM00116 Domain in cystathionine beta-synthase and other proteins. CMS_RS00660 SM00354 helix_turn _helix lactose operon repressor CMS_RS00670 SM01007 Class II Aldolase and Adducin N-terminal domain CMS_RS00685 SM00382 ATPases associated with a variety of cellular activities CMS_RS00705 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS00730 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS00770 SM00421 helix_turn_helix, Lux Regulon CMS_RS00800 SM00752 Horizontally Transferred TransMembrane Domain CMS_RS00805 SM00382 ATPases associated with a variety of cellular activities CMS_RS00810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CMS_RS00810 SM00493 CMS_RS00810 CMS_RS00820 SM00859 Semialdehyde dehydrogenase, NAD binding domain CMS_RS00905 SM00740 CMS_RS00905 CMS_RS00950 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CMS_RS00950 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CMS_RS00950 SM00493 CMS_RS00950 CMS_RS01000 SM00382 ATPases associated with a variety of cellular activities CMS_RS01005 SM00382 ATPases associated with a variety of cellular activities CMS_RS01035 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS01115 SM01022 CMS_RS01115 CMS_RS01130 SM00387 Histidine kinase-like ATPases CMS_RS01130 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS01140 SM00448 cheY-homologous receiver domain CMS_RS01140 SM00862 Transcriptional regulatory protein, C terminal CMS_RS01220 SM00487 DEAD-like helicases superfamily CMS_RS01220 SM00490 helicase superfamily c-terminal domain CMS_RS01275 SM00460 Transglutaminase/protease-like homologues CMS_RS01305 SM00944 Pro-kumamolisin, activation domain CMS_RS01340 SM00849 Metallo-beta-lactamase superfamily CMS_RS01350 SM00663 RNA polymerase I subunit A N-terminus CMS_RS01360 SM00062 Bacterial periplasmic substrate-binding proteins CMS_RS01360 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CMS_RS01370 SM00382 ATPases associated with a variety of cellular activities CMS_RS01395 SM00838 Elongation factor G C-terminus CMS_RS01395 SM00889 Elongation factor G, domain IV CMS_RS01410 SM01403 CMS_RS01410 CMS_RS01430 SM01382 CMS_RS01430 CMS_RS01430 SM01383 CMS_RS01430 CMS_RS01445 SM00322 K homology RNA-binding domain CMS_RS01465 SM01374 CMS_RS01465 CMS_RS01580 SM00662 RNA polymerases D CMS_RS01630 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS01640 SM01034 Sensors of blue-light using FAD CMS_RS01660 SM00636 CMS_RS01660 CMS_RS01675 SM00382 ATPases associated with a variety of cellular activities CMS_RS01695 SM00421 helix_turn_helix, Lux Regulon CMS_RS01695 SM00448 cheY-homologous receiver domain CMS_RS01725 SM00849 Metallo-beta-lactamase superfamily CMS_RS01895 SM00014 Acid phosphatase homologues CMS_RS01930 SM00829 Enoylreductase CMS_RS01965 SM00014 Acid phosphatase homologues CMS_RS01980 SM01012 CMS_RS01980 CMS_RS01995 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CMS_RS01995 SM01232 CMS_RS01995 CMS_RS02000 SM00382 ATPases associated with a variety of cellular activities CMS_RS02000 SM00487 DEAD-like helicases superfamily CMS_RS02000 SM00490 helicase superfamily c-terminal domain CMS_RS02020 SM00487 DEAD-like helicases superfamily CMS_RS02020 SM00490 helicase superfamily c-terminal domain CMS_RS02055 SM00731 SprT homologues. CMS_RS02150 SM00354 helix_turn _helix lactose operon repressor CMS_RS02170 SM00642 Alpha-amylase domain CMS_RS02180 SM00421 helix_turn_helix, Lux Regulon CMS_RS02225 SM00563 Phosphate acyltransferases CMS_RS02275 SM00448 cheY-homologous receiver domain CMS_RS02275 SM00862 Transcriptional regulatory protein, C terminal CMS_RS02320 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS02335 SM01012 CMS_RS02335 CMS_RS02340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CMS_RS02340 SM01012 CMS_RS02340 CMS_RS02360 SM00421 helix_turn_helix, Lux Regulon CMS_RS02360 SM00448 cheY-homologous receiver domain CMS_RS02365 SM00387 Histidine kinase-like ATPases CMS_RS02375 SM00382 ATPases associated with a variety of cellular activities CMS_RS02410 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS02425 SM00344 helix_turn_helix ASNC type CMS_RS02495 SM00421 helix_turn_helix, Lux Regulon CMS_RS02495 SM00448 cheY-homologous receiver domain CMS_RS02530 SM00829 Enoylreductase CMS_RS02585 SM01005 Alanine racemase, C-terminal domain CMS_RS02590 SM01005 Alanine racemase, C-terminal domain CMS_RS02615 SM00883 Chaperonin 10 Kd subunit CMS_RS02630 SM00382 ATPases associated with a variety of cellular activities CMS_RS02635 SM00382 ATPases associated with a variety of cellular activities CMS_RS02650 SM00116 Domain in cystathionine beta-synthase and other proteins. CMS_RS02650 SM01240 CMS_RS02650 CMS_RS02660 SM01240 CMS_RS02660 CMS_RS02730 SM00382 ATPases associated with a variety of cellular activities CMS_RS02755 SM00448 cheY-homologous receiver domain CMS_RS02755 SM00862 Transcriptional regulatory protein, C terminal CMS_RS02760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CMS_RS02760 SM00387 Histidine kinase-like ATPases CMS_RS02760 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS02785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CMS_RS02790 SM00382 ATPases associated with a variety of cellular activities CMS_RS02815 SM00382 ATPases associated with a variety of cellular activities CMS_RS02895 SM00420 helix_turn_helix, Deoxyribose operon repressor CMS_RS02895 SM01134 CMS_RS02895 CMS_RS02960 SM00529 Helix-turn-helix diphteria tox regulatory element CMS_RS02995 SM01329 CMS_RS02995 CMS_RS03025 SM00422 helix_turn_helix, mercury resistance CMS_RS03045 SM00878 Biotin carboxylase C-terminal domain CMS_RS03065 SM00421 helix_turn_helix, Lux Regulon CMS_RS03065 SM00448 cheY-homologous receiver domain CMS_RS03115 SM01001 AIR carboxylase CMS_RS03130 SM00382 ATPases associated with a variety of cellular activities CMS_RS03290 SM00996 S-adenosyl-L-homocysteine hydrolase CMS_RS03290 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CMS_RS03305 SM01217 CMS_RS03305 CMS_RS03330 SM00382 ATPases associated with a variety of cellular activities CMS_RS03350 SM00448 cheY-homologous receiver domain CMS_RS03350 SM00862 Transcriptional regulatory protein, C terminal CMS_RS03355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CMS_RS03355 SM00387 Histidine kinase-like ATPases CMS_RS03355 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS03360 SM00909 Sporulation and spore germination CMS_RS03375 SM00957 SecA DEAD-like domain CMS_RS03375 SM00958 SecA preprotein cross-linking domain CMS_RS03390 SM00858 CMS_RS03390 CMS_RS03400 SM00387 Histidine kinase-like ATPases CMS_RS03425 SM01058 CarD-like/TRCF domain CMS_RS03460 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS03525 SM01120 CMS_RS03525 CMS_RS03580 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CMS_RS03610 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CMS_RS03615 SM00382 ATPases associated with a variety of cellular activities CMS_RS03620 SM01323 CMS_RS03620 CMS_RS03635 SM00450 Rhodanese Homology Domain CMS_RS03640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CMS_RS03640 SM00954 Region found in RelA / SpoT proteins CMS_RS03660 SM00382 ATPases associated with a variety of cellular activities CMS_RS03665 SM00363 S4 RNA-binding domain CMS_RS03665 SM01390 CMS_RS03665 CMS_RS03675 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CMS_RS03680 SM00732 Likely ribonuclease with RNase H fold. CMS_RS03740 SM00487 DEAD-like helicases superfamily CMS_RS03740 SM00490 helicase superfamily c-terminal domain CMS_RS03760 SM00358 Double-stranded RNA binding motif CMS_RS03760 SM00535 Ribonuclease III family CMS_RS03765 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CMS_RS03765 SM01232 CMS_RS03765 CMS_RS03775 SM00968 SMC proteins Flexible Hinge Domain CMS_RS03780 SM00382 ATPases associated with a variety of cellular activities CMS_RS03780 SM00962 SRP54-type protein, GTPase domain CMS_RS03780 SM00963 SRP54-type protein, helical bundle domain CMS_RS03785 SM00382 ATPases associated with a variety of cellular activities CMS_RS03785 SM00962 SRP54-type protein, GTPase domain CMS_RS03785 SM00963 SRP54-type protein, helical bundle domain CMS_RS03860 SM00382 ATPases associated with a variety of cellular activities CMS_RS03955 SM00642 Alpha-amylase domain CMS_RS03960 SM00642 Alpha-amylase domain CMS_RS04010 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CMS_RS04015 SM00382 ATPases associated with a variety of cellular activities CMS_RS04105 SM00448 cheY-homologous receiver domain CMS_RS04135 SM00354 helix_turn _helix lactose operon repressor CMS_RS04235 SM00830 Chorismate mutase type II CMS_RS04285 SM00867 YceI-like domain CMS_RS04295 SM00829 Enoylreductase CMS_RS04340 SM00354 helix_turn _helix lactose operon repressor CMS_RS04360 SM01217 CMS_RS04360 CMS_RS04370 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS04410 SM00813 Alpha-L-arabinofuranosidase C-terminus CMS_RS04420 SM00833 Cobalamin synthesis protein cobW C-terminal domain CMS_RS04435 SM00382 ATPases associated with a variety of cellular activities CMS_RS04435 SM01086 C-terminal, D2-small domain, of ClpB protein CMS_RS04440 SM00382 ATPases associated with a variety of cellular activities CMS_RS04540 SM00342 helix_turn_helix, arabinose operon control protein CMS_RS04565 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS04565 SM00866 CMS_RS04565 CMS_RS04590 SM00872 Alpha mannosidase, middle domain CMS_RS04600 SM00420 helix_turn_helix, Deoxyribose operon repressor CMS_RS04600 SM01134 CMS_RS04600 CMS_RS04630 SM01038 Beta galactosidase small chain CMS_RS04655 SM00382 ATPases associated with a variety of cellular activities CMS_RS04670 SM00354 helix_turn _helix lactose operon repressor CMS_RS04695 SM00640 Glycosyl hydrolases family 32 CMS_RS04700 SM00640 Glycosyl hydrolases family 32 CMS_RS04740 SM00382 ATPases associated with a variety of cellular activities CMS_RS04755 SM00822 CMS_RS04755 CMS_RS04790 SM00421 helix_turn_helix, Lux Regulon CMS_RS04790 SM00448 cheY-homologous receiver domain CMS_RS04850 SM00422 helix_turn_helix, mercury resistance CMS_RS04870 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS04885 SM00953 CMS_RS04885 CMS_RS04955 SM00382 ATPases associated with a variety of cellular activities CMS_RS04965 SM00387 Histidine kinase-like ATPases CMS_RS04970 SM00421 helix_turn_helix, Lux Regulon CMS_RS04970 SM00448 cheY-homologous receiver domain CMS_RS04980 SM00382 ATPases associated with a variety of cellular activities CMS_RS05015 SM00387 Histidine kinase-like ATPases CMS_RS05015 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS05040 SM00829 Enoylreductase CMS_RS05060 SM00872 Alpha mannosidase, middle domain CMS_RS05085 SM01236 CMS_RS05085 CMS_RS05090 SM00704 CDGSH-type zinc finger. Function unknown. CMS_RS05100 SM01091 Transporter associated domain CMS_RS05115 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS05140 SM01209 CMS_RS05140 CMS_RS05140 SM01210 CMS_RS05140 CMS_RS05200 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS05210 SM00642 Alpha-amylase domain CMS_RS05230 SM00642 Alpha-amylase domain CMS_RS05245 SM00532 Ligase N family CMS_RS05265 SM00845 GatB domain CMS_RS05270 SM00382 ATPases associated with a variety of cellular activities CMS_RS05305 SM00382 ATPases associated with a variety of cellular activities CMS_RS05375 SM00822 CMS_RS05375 CMS_RS05430 SM00829 Enoylreductase CMS_RS05450 SM00487 DEAD-like helicases superfamily CMS_RS05450 SM00490 helicase superfamily c-terminal domain CMS_RS05515 SM01038 Beta galactosidase small chain CMS_RS05565 SM00849 Metallo-beta-lactamase superfamily CMS_RS05615 SM01006 Siderophore biosynthesis protein domain CMS_RS05630 SM00822 CMS_RS05630 CMS_RS05635 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS05645 SM00829 Enoylreductase CMS_RS05655 SM00880 CMS_RS05655 CMS_RS05655 SM01118 CMS_RS05655 CMS_RS05720 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CMS_RS05735 SM00478 endonuclease III CMS_RS05735 SM01009 AlkA N-terminal domain CMS_RS05755 SM00857 Resolvase, N terminal domain CMS_RS05765 SM00421 helix_turn_helix, Lux Regulon CMS_RS05765 SM00448 cheY-homologous receiver domain CMS_RS05855 SM01387 CMS_RS05855 CMS_RS05860 SM00316 Ribosomal protein S1-like RNA-binding domain CMS_RS05860 SM00322 K homology RNA-binding domain CMS_RS05895 SM00855 Phosphoglycerate mutase family CMS_RS05920 SM01130 CMS_RS05920 CMS_RS05925 SM00849 Metallo-beta-lactamase superfamily CMS_RS05935 SM00382 ATPases associated with a variety of cellular activities CMS_RS05945 SM00843 CMS_RS05945 CMS_RS05960 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS05970 SM00382 ATPases associated with a variety of cellular activities CMS_RS05980 SM00729 Elongator protein 3, MiaB family, Radical SAM CMS_RS06055 SM00967 RNA 2'-O ribose methyltransferase substrate binding CMS_RS06060 SM00382 ATPases associated with a variety of cellular activities CMS_RS06065 SM00062 Bacterial periplasmic substrate-binding proteins CMS_RS06085 SM00873 B3/4 domain CMS_RS06085 SM00874 tRNA synthetase B5 domain CMS_RS06085 SM00896 Ferredoxin-fold anticodon binding domain CMS_RS06090 SM00859 Semialdehyde dehydrogenase, NAD binding domain CMS_RS06175 SM00363 S4 RNA-binding domain CMS_RS06220 SM00363 S4 RNA-binding domain CMS_RS06235 SM00382 ATPases associated with a variety of cellular activities CMS_RS06270 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS06370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CMS_RS06370 SM00387 Histidine kinase-like ATPases CMS_RS06370 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS06430 SM00829 Enoylreductase CMS_RS06480 SM00014 Acid phosphatase homologues CMS_RS06515 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CMS_RS06540 SM00271 DnaJ molecular chaperone homology domain CMS_RS06560 SM00363 S4 RNA-binding domain CMS_RS06580 SM00829 Enoylreductase CMS_RS06605 SM00382 ATPases associated with a variety of cellular activities CMS_RS06645 SM00448 cheY-homologous receiver domain CMS_RS06650 SM00387 Histidine kinase-like ATPases CMS_RS06660 SM00240 Forkhead associated domain CMS_RS06665 SM00422 helix_turn_helix, mercury resistance CMS_RS06670 SM00422 helix_turn_helix, mercury resistance CMS_RS06680 SM00878 Biotin carboxylase C-terminal domain CMS_RS06705 SM00563 Phosphate acyltransferases CMS_RS06720 SM00220 Serine/Threonine protein kinases, catalytic domain CMS_RS06720 SM00740 CMS_RS06720 CMS_RS06725 SM00257 Lysin motif CMS_RS06805 SM00864 Tubulin/FtsZ family, GTPase domain CMS_RS06805 SM00865 Tubulin/FtsZ family, C-terminal domain CMS_RS06830 SM00363 S4 RNA-binding domain CMS_RS06835 SM00481 DNA polymerase alpha chain like domain CMS_RS06840 SM00903 Flavin reductase like domain CMS_RS07045 SM01329 CMS_RS07045 CMS_RS07110 SM00849 Metallo-beta-lactamase superfamily CMS_RS07125 SM00986 Uracil DNA glycosylase superfamily CMS_RS07125 SM00987 UreE urease accessory protein, C-terminal domain CMS_RS07150 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CMS_RS07160 SM00421 helix_turn_helix, Lux Regulon CMS_RS07245 SM00740 CMS_RS07245 CMS_RS07265 SM00822 CMS_RS07265 CMS_RS07270 SM00822 CMS_RS07270 CMS_RS07285 SM00870 CMS_RS07285 CMS_RS07290 SM00354 helix_turn _helix lactose operon repressor CMS_RS07295 SM00460 Transglutaminase/protease-like homologues CMS_RS07305 SM00836 DALR anticodon binding domain CMS_RS07305 SM01016 Arginyl tRNA synthetase N terminal dom CMS_RS07340 SM00357 Cold shock protein domain CMS_RS07340 SM00382 ATPases associated with a variety of cellular activities CMS_RS07340 SM00959 Rho termination factor, N-terminal domain CMS_RS07345 SM00937 CMS_RS07345 CMS_RS07405 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CMS_RS07405 SM01232 CMS_RS07405 CMS_RS07450 SM00382 ATPases associated with a variety of cellular activities CMS_RS07450 SM00994 ClpX C4-type zinc finger CMS_RS07450 SM01086 C-terminal, D2-small domain, of ClpB protein CMS_RS07485 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS07490 SM00382 ATPases associated with a variety of cellular activities CMS_RS07565 SM00984 UDP binding domain CMS_RS07570 SM00642 Alpha-amylase domain CMS_RS07575 SM00642 Alpha-amylase domain CMS_RS07595 SM00382 ATPases associated with a variety of cellular activities CMS_RS07625 SM00479 CMS_RS07625 CMS_RS07670 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS07680 SM00382 ATPases associated with a variety of cellular activities CMS_RS07730 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CMS_RS07735 SM00400 zinc finger CMS_RS07735 SM00493 CMS_RS07735 CMS_RS07755 SM00382 ATPases associated with a variety of cellular activities CMS_RS07760 SM00382 ATPases associated with a variety of cellular activities CMS_RS07790 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CMS_RS07810 SM00382 ATPases associated with a variety of cellular activities CMS_RS07920 SM00357 Cold shock protein domain CMS_RS07925 SM00482 DNA polymerase A domain CMS_RS07950 SM00825 Beta-ketoacyl synthase CMS_RS07965 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CMS_RS08005 SM00382 ATPases associated with a variety of cellular activities CMS_RS08045 SM01230 CMS_RS08045 CMS_RS08055 SM01230 CMS_RS08055 CMS_RS08075 SM00220 Serine/Threonine protein kinases, catalytic domain CMS_RS08125 SM00387 Histidine kinase-like ATPases CMS_RS08125 SM00433 TopoisomeraseII CMS_RS08130 SM00434 DNA Topoisomerase IV CMS_RS08180 SM00861 Transketolase, pyrimidine binding domain CMS_RS08195 SM00341 Helicase and RNase D C-terminal CMS_RS08195 SM00474 3'-5' exonuclease CMS_RS08215 SM00450 Rhodanese Homology Domain CMS_RS08265 SM00382 ATPases associated with a variety of cellular activities CMS_RS08275 SM00271 DnaJ molecular chaperone homology domain CMS_RS08350 SM00487 DEAD-like helicases superfamily CMS_RS08350 SM00490 helicase superfamily c-terminal domain CMS_RS08350 SM01142 CMS_RS08350 CMS_RS08395 SM00354 helix_turn _helix lactose operon repressor CMS_RS08430 SM01217 CMS_RS08430 CMS_RS08440 SM01217 CMS_RS08440 CMS_RS08445 SM00354 helix_turn _helix lactose operon repressor CMS_RS08455 SM00822 CMS_RS08455 CMS_RS08475 SM00450 Rhodanese Homology Domain CMS_RS08480 SM00450 Rhodanese Homology Domain CMS_RS08540 SM00917 LeuA allosteric (dimerisation) domain CMS_RS08555 SM00421 helix_turn_helix, Lux Regulon CMS_RS08555 SM00448 cheY-homologous receiver domain CMS_RS08570 SM00116 Domain in cystathionine beta-synthase and other proteins. CMS_RS08570 SM01091 Transporter associated domain CMS_RS08580 SM00322 K homology RNA-binding domain CMS_RS08595 SM00271 DnaJ molecular chaperone homology domain CMS_RS08615 SM00729 Elongator protein 3, MiaB family, Radical SAM CMS_RS08650 SM00838 Elongation factor G C-terminus CMS_RS08725 SM00382 ATPases associated with a variety of cellular activities CMS_RS08730 SM00382 ATPases associated with a variety of cellular activities CMS_RS08805 SM00382 ATPases associated with a variety of cellular activities CMS_RS08850 SM00481 DNA polymerase alpha chain like domain CMS_RS08875 SM00829 Enoylreductase CMS_RS08910 SM00487 DEAD-like helicases superfamily CMS_RS08910 SM00490 helicase superfamily c-terminal domain CMS_RS08940 SM00420 helix_turn_helix, Deoxyribose operon repressor CMS_RS08940 SM01134 CMS_RS08940 CMS_RS09020 SM00316 Ribosomal protein S1-like RNA-binding domain CMS_RS09025 SM00756 CMS_RS09025 CMS_RS09030 SM00562 CMS_RS09030 CMS_RS09095 SM00422 helix_turn_helix, mercury resistance CMS_RS09105 SM00904 Riboflavin kinase CMS_RS09135 SM00478 endonuclease III CMS_RS09135 SM00525 CMS_RS09135 CMS_RS09190 SM00220 Serine/Threonine protein kinases, catalytic domain CMS_RS09230 SM00487 DEAD-like helicases superfamily CMS_RS09230 SM00490 helicase superfamily c-terminal domain CMS_RS09270 SM00226 Low molecular weight phosphatase family CMS_RS09275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CMS_RS09325 SM00758 CMS_RS09325 CMS_RS09330 SM00758 CMS_RS09330 CMS_RS09345 SM00729 Elongator protein 3, MiaB family, Radical SAM CMS_RS09375 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CMS_RS09430 SM00487 DEAD-like helicases superfamily CMS_RS09430 SM00490 helicase superfamily c-terminal domain CMS_RS09440 SM00481 DNA polymerase alpha chain like domain CMS_RS09450 SM01011 Aminopeptidase P, N-terminal domain CMS_RS09460 SM00116 Domain in cystathionine beta-synthase and other proteins. CMS_RS09460 SM00924 MgtE intracellular N domain CMS_RS09510 SM00331 Sigma factor PP2C-like phosphatases CMS_RS09510 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CMS_RS09520 SM00344 helix_turn_helix ASNC type CMS_RS09545 SM00382 ATPases associated with a variety of cellular activities CMS_RS09610 SM00421 helix_turn_helix, Lux Regulon CMS_RS09630 SM00487 DEAD-like helicases superfamily CMS_RS09665 SM00855 Phosphoglycerate mutase family CMS_RS09680 SM00642 Alpha-amylase domain CMS_RS09685 SM00479 CMS_RS09685 CMS_RS09695 SM00382 ATPases associated with a variety of cellular activities CMS_RS09720 SM00822 CMS_RS09720 CMS_RS09740 SM00382 ATPases associated with a variety of cellular activities CMS_RS09750 SM00382 ATPases associated with a variety of cellular activities CMS_RS09780 SM00861 Transketolase, pyrimidine binding domain CMS_RS09830 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CMS_RS09850 SM00465 GIY-YIG type nucleases (URI domain) CMS_RS09860 SM00487 DEAD-like helicases superfamily CMS_RS09860 SM00490 helicase superfamily c-terminal domain CMS_RS09870 SM00316 Ribosomal protein S1-like RNA-binding domain CMS_RS09885 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CMS_RS09885 SM00475 5'-3' exonuclease CMS_RS09885 SM00482 DNA polymerase A domain CMS_RS09905 SM00448 cheY-homologous receiver domain CMS_RS09905 SM01012 CMS_RS09905 CMS_RS10020 SM01409 CMS_RS10020 CMS_RS10025 SM00072 Guanylate kinase homologues. CMS_RS10030 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CMS_RS10035 SM00851 MGS-like domain CMS_RS10035 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CMS_RS10040 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CMS_RS10075 SM00062 Bacterial periplasmic substrate-binding proteins CMS_RS10080 SM00382 ATPases associated with a variety of cellular activities CMS_RS10095 SM00841 Elongation factor P, C-terminal CMS_RS10095 SM01185 CMS_RS10095 CMS_RS10135 SM00563 Phosphate acyltransferases CMS_RS10155 SM00331 Sigma factor PP2C-like phosphatases CMS_RS10155 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CMS_RS10185 SM00448 cheY-homologous receiver domain CMS_RS10205 SM00421 helix_turn_helix, Lux Regulon CMS_RS10205 SM00448 cheY-homologous receiver domain CMS_RS10220 SM00867 YceI-like domain CMS_RS10240 SM00116 Domain in cystathionine beta-synthase and other proteins. CMS_RS10240 SM01091 Transporter associated domain CMS_RS10250 SM00861 Transketolase, pyrimidine binding domain CMS_RS10295 SM00382 ATPases associated with a variety of cellular activities CMS_RS10315 SM00382 ATPases associated with a variety of cellular activities CMS_RS10320 SM00937 CMS_RS10320 CMS_RS10425 SM00382 ATPases associated with a variety of cellular activities CMS_RS10440 SM00382 ATPases associated with a variety of cellular activities CMS_RS10450 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS10480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CMS_RS10500 SM00382 ATPases associated with a variety of cellular activities CMS_RS10515 SM00421 helix_turn_helix, Lux Regulon CMS_RS10515 SM00448 cheY-homologous receiver domain CMS_RS10555 SM00448 cheY-homologous receiver domain CMS_RS10555 SM00862 Transcriptional regulatory protein, C terminal CMS_RS10560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CMS_RS10560 SM00387 Histidine kinase-like ATPases CMS_RS10560 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS10580 SM01034 Sensors of blue-light using FAD CMS_RS10595 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS10600 SM00788 Adenylosuccinate synthetase CMS_RS10670 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS10680 SM00903 Flavin reductase like domain CMS_RS10690 SM00422 helix_turn_helix, mercury resistance CMS_RS10700 SM00487 DEAD-like helicases superfamily CMS_RS10700 SM00490 helicase superfamily c-terminal domain CMS_RS10755 SM00387 Histidine kinase-like ATPases CMS_RS10760 SM00448 cheY-homologous receiver domain CMS_RS10765 SM01022 CMS_RS10765 CMS_RS10785 SM00710 Parallel beta-helix repeats CMS_RS10815 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS10880 SM00382 ATPases associated with a variety of cellular activities CMS_RS10900 SM00060 Fibronectin type 3 domain CMS_RS10950 SM00838 Elongation factor G C-terminus CMS_RS10960 SM00382 ATPases associated with a variety of cellular activities CMS_RS11065 SM01060 CMS_RS11065 CMS_RS11080 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CMS_RS11095 SM00729 Elongator protein 3, MiaB family, Radical SAM CMS_RS11115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS11115 SM00895 CMS_RS11115 CMS_RS11135 SM01211 CMS_RS11135 CMS_RS11175 SM00226 Low molecular weight phosphatase family CMS_RS11255 SM01400 CMS_RS11255 CMS_RS11275 SM00830 Chorismate mutase type II CMS_RS11285 SM00421 helix_turn_helix, Lux Regulon CMS_RS11285 SM00448 cheY-homologous receiver domain CMS_RS11355 SM00974 CMS_RS11355 CMS_RS11400 SM00650 Ribosomal RNA adenine dimethylases CMS_RS11560 SM00881 CoA binding domain CMS_RS11605 SM00346 helix_turn_helix isocitrate lyase regulation CMS_RS11630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CMS_RS11635 SM01130 CMS_RS11635 CMS_RS11665 SM00382 ATPases associated with a variety of cellular activities CMS_RS11665 SM00487 DEAD-like helicases superfamily CMS_RS11665 SM00490 helicase superfamily c-terminal domain CMS_RS11665 SM00847 Helicase associated domain (HA2) Add an annotation CMS_RS11675 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS11675 SM00895 CMS_RS11675 CMS_RS11680 SM00796 Allophanate hydrolase subunit 1 CMS_RS11680 SM00797 Allophanate hydrolase subunit 2 CMS_RS11680 SM00878 Biotin carboxylase C-terminal domain CMS_RS11695 SM00450 Rhodanese Homology Domain CMS_RS11735 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CMS_RS11745 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS11745 SM00895 CMS_RS11745 CMS_RS11760 SM01120 CMS_RS11760 CMS_RS11765 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS11765 SM00866 CMS_RS11765 CMS_RS11770 SM00382 ATPases associated with a variety of cellular activities CMS_RS11810 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS11860 SM00855 Phosphoglycerate mutase family CMS_RS11880 SM00479 CMS_RS11880 CMS_RS11920 SM00947 Carbonic anhydrase CMS_RS11935 SM00670 Large family of predicted nucleotide-binding domains CMS_RS12050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CMS_RS12050 SM00331 Sigma factor PP2C-like phosphatases CMS_RS12105 SM01192 CMS_RS12105 CMS_RS12105 SM01193 CMS_RS12105 CMS_RS12135 SM00487 DEAD-like helicases superfamily CMS_RS12135 SM00490 helicase superfamily c-terminal domain CMS_RS12135 SM00982 CMS_RS12135 CMS_RS12135 SM01058 CarD-like/TRCF domain CMS_RS12155 SM01350 CMS_RS12155 CMS_RS12175 SM01400 CMS_RS12175 CMS_RS12190 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS12220 SM00382 ATPases associated with a variety of cellular activities CMS_RS12220 SM00930 CMS_RS12220 CMS_RS12240 SM00382 ATPases associated with a variety of cellular activities CMS_RS12255 SM00382 ATPases associated with a variety of cellular activities CMS_RS12275 SM00852 Probable molybdopterin binding domain CMS_RS12285 SM00852 Probable molybdopterin binding domain CMS_RS12325 SM00822 CMS_RS12325 CMS_RS12335 SM00886 Stress responsive A/B Barrel Domain CMS_RS12405 SM00387 Histidine kinase-like ATPases CMS_RS12405 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS12410 SM00448 cheY-homologous receiver domain CMS_RS12410 SM00862 Transcriptional regulatory protein, C terminal CMS_RS12445 SM00382 ATPases associated with a variety of cellular activities CMS_RS12465 SM00729 Elongator protein 3, MiaB family, Radical SAM CMS_RS12485 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS12490 SM00354 helix_turn _helix lactose operon repressor CMS_RS12500 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS12520 SM00450 Rhodanese Homology Domain CMS_RS12550 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS12555 SM00862 Transcriptional regulatory protein, C terminal CMS_RS12595 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CMS_RS12615 SM00886 Stress responsive A/B Barrel Domain CMS_RS12620 SM00382 ATPases associated with a variety of cellular activities CMS_RS12655 SM00796 Allophanate hydrolase subunit 1 CMS_RS12660 SM00797 Allophanate hydrolase subunit 2 CMS_RS12670 SM00382 ATPases associated with a variety of cellular activities CMS_RS12700 SM00354 helix_turn _helix lactose operon repressor CMS_RS12710 SM00855 Phosphoglycerate mutase family CMS_RS12735 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CMS_RS12765 SM00382 ATPases associated with a variety of cellular activities CMS_RS12770 SM00382 ATPases associated with a variety of cellular activities CMS_RS12795 SM00798 AICARFT/IMPCHase bienzyme CMS_RS12795 SM00851 MGS-like domain CMS_RS12810 SM00881 CoA binding domain CMS_RS12890 SM00642 Alpha-amylase domain CMS_RS12950 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CMS_RS12950 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CMS_RS12955 SM00649 Ribosomal protein L11/L12 CMS_RS12970 SM00829 Enoylreductase CMS_RS13025 SM00421 helix_turn_helix, Lux Regulon CMS_RS13080 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS13160 SM00354 helix_turn _helix lactose operon repressor CMS_RS13305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CMS_RS13305 SM00331 Sigma factor PP2C-like phosphatases CMS_RS13310 SM00331 Sigma factor PP2C-like phosphatases CMS_RS13330 SM00855 Phosphoglycerate mutase family CMS_RS13355 SM00382 ATPases associated with a variety of cellular activities CMS_RS13385 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS13440 SM00855 Phosphoglycerate mutase family CMS_RS13455 SM00862 Transcriptional regulatory protein, C terminal CMS_RS13495 SM00855 Phosphoglycerate mutase family CMS_RS13505 SM00387 Histidine kinase-like ATPases CMS_RS13505 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS13510 SM00448 cheY-homologous receiver domain CMS_RS13510 SM00862 Transcriptional regulatory protein, C terminal CMS_RS13520 SM01058 CarD-like/TRCF domain CMS_RS13530 SM00840 CMS_RS13530 CMS_RS13535 SM00967 RNA 2'-O ribose methyltransferase substrate binding CMS_RS13545 SM00382 ATPases associated with a variety of cellular activities CMS_RS13580 SM00357 Cold shock protein domain CMS_RS13595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CMS_RS13595 SM00387 Histidine kinase-like ATPases CMS_RS13595 SM00388 His Kinase A (phosphoacceptor) domain CMS_RS13600 SM00448 cheY-homologous receiver domain CMS_RS13600 SM00862 Transcriptional regulatory protein, C terminal CMS_RS13605 SM00487 DEAD-like helicases superfamily CMS_RS13605 SM00490 helicase superfamily c-terminal domain CMS_RS13620 SM00357 Cold shock protein domain CMS_RS13635 SM00419 helix_turn_helix, cAMP Regulatory protein CMS_RS13635 SM00529 Helix-turn-helix diphteria tox regulatory element CMS_RS13635 SM00899 CMS_RS13635 CMS_RS13645 SM00507 HNH nucleases CMS_RS13655 SM01043 Bacterial transcriptional activator domain CMS_RS13760 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS13840 SM00271 DnaJ molecular chaperone homology domain CMS_RS13845 SM00422 helix_turn_helix, mercury resistance CMS_RS13920 SM00640 Glycosyl hydrolases family 32 CMS_RS13925 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS13965 SM00829 Enoylreductase CMS_RS13980 SM00477 DNA/RNA non-specific endonuclease CMS_RS13980 SM00892 DNA/RNA non-specific endonuclease CMS_RS13995 SM01004 Delta-aminolevulinic acid dehydratase CMS_RS14090 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CMS_RS14110 SM00382 ATPases associated with a variety of cellular activities CMS_RS14205 SM00382 ATPases associated with a variety of cellular activities CMS_RS14210 SM00382 ATPases associated with a variety of cellular activities CMS_RS14405 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS14430 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CMS_RS14430 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CMS_RS14435 SM00344 helix_turn_helix ASNC type CMS_RS14455 SM00342 helix_turn_helix, arabinose operon control protein CMS_RS14470 SM01022 CMS_RS14470 CMS_RS14515 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS14550 SM00382 ATPases associated with a variety of cellular activities CMS_RS14565 SM00354 helix_turn _helix lactose operon repressor CMS_RS14650 SM00382 ATPases associated with a variety of cellular activities CMS_RS14680 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS14730 SM00857 Resolvase, N terminal domain CMS_RS14750 SM00345 helix_turn_helix gluconate operon transcriptional repressor CMS_RS14750 SM00895 CMS_RS14750 CMS_RS14820 SM00155 Phospholipase D. Active site motifs. CMS_RS14825 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS14860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CMS_RS14895 SM00855 Phosphoglycerate mutase family CMS_RS14955 SM00354 helix_turn _helix lactose operon repressor CMS_RS15005 SM00849 Metallo-beta-lactamase superfamily CMS_RS15010 SM00855 Phosphoglycerate mutase family CMS_RS15030 SM01133 CMS_RS15030 CMS_RS15075 SM00382 ATPases associated with a variety of cellular activities CMS_RS15105 SM00411 bacterial (prokaryotic) histone like domain CMS_RS15135 SM00382 ATPases associated with a variety of cellular activities CMS_RS15150 SM00861 Transketolase, pyrimidine binding domain CMS_RS15180 SM00226 Low molecular weight phosphatase family CMS_RS15220 SM00422 helix_turn_helix, mercury resistance CMS_RS15260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CMS_RS15295 SM00470 ParB-like nuclease domain CMS_RS15310 SM00393 Putative single-stranded nucleic acids-binding domain CMS_RS15320 SM01234 CMS_RS15320 CMS_RS15380 SM00433 TopoisomeraseII CMS_RS15680 SM00220 Serine/Threonine protein kinases, catalytic domain CMS_RS16155 SM00894 Excalibur calcium-binding domain CMS_RS16165 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS16265 SM00974 CMS_RS16265 CMS_RS16280 SM00530 Helix-turn-helix XRE-family like proteins CMS_RS16285 SM00347 helix_turn_helix multiple antibiotic resistance protein CMS_RS16285 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CMS_RS16325 SM00480 DNA polymerase III beta subunit