locus-tag class description CMS_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CMS_RS00005 PF00308 Bacterial dnaA protein CMS_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CMS_RS00010 PF02767 DNA polymerase III beta subunit, central domain CMS_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CMS_RS00020 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CMS_RS00020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CMS_RS00025 PF02463 RecF/RecN/SMC N terminal domain CMS_RS00030 PF05258 Dna[CI] antecedent, DciA CMS_RS00035 PF00986 DNA gyrase B subunit, carboxyl terminus CMS_RS00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS00035 PF01751 Toprim domain CMS_RS00035 PF00204 DNA gyrase B CMS_RS00040 PF03989 DNA gyrase C-terminal domain, beta-propeller CMS_RS00040 PF00521 DNA gyrase/topoisomerase IV, subunit A CMS_RS00065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CMS_RS00075 PF06781 Cell division protein CrgA CMS_RS00080 PF04203 Sortase domain CMS_RS00090 PF00117 Glutamine amidotransferase class-I CMS_RS00095 PF00069 Protein kinase domain CMS_RS00095 PF03793 PASTA domain CMS_RS00100 PF00069 Protein kinase domain CMS_RS00105 PF00905 Penicillin binding protein transpeptidase domain CMS_RS00110 PF01098 Cell cycle protein CMS_RS00120 PF16697 Inner membrane component of T3SS, cytoplasmic domain CMS_RS00135 PF09924 Uncharacterised conserved protein (DUF2156) CMS_RS00145 PF00072 Response regulator receiver domain CMS_RS00145 PF00196 Bacterial regulatory proteins, luxR family CMS_RS00150 PF07730 Histidine kinase CMS_RS00160 PF00444 Ribosomal protein L36 CMS_RS00170 PF09382 RQC domain CMS_RS00170 PF16124 RecQ zinc-binding CMS_RS00170 PF00270 DEAD/DEAH box helicase CMS_RS00170 PF00271 Helicase conserved C-terminal domain CMS_RS00170 PF00570 HRDC domain CMS_RS00195 PF01741 Large-conductance mechanosensitive channel, MscL CMS_RS00210 PF00483 Nucleotidyl transferase CMS_RS00235 PF05175 Methyltransferase small domain CMS_RS00235 PF17827 PrmC N-terminal domain CMS_RS00250 PF00356 Bacterial regulatory proteins, lacI family CMS_RS00260 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS00265 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS00270 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CMS_RS00275 PF00665 Integrase core domain CMS_RS00275 PF13936 Helix-turn-helix domain CMS_RS00280 PF09382 RQC domain CMS_RS00280 PF16124 RecQ zinc-binding CMS_RS00280 PF00570 HRDC domain CMS_RS00280 PF00270 DEAD/DEAH box helicase CMS_RS00280 PF00271 Helicase conserved C-terminal domain CMS_RS00285 PF07944 Beta-L-arabinofuranosidase, GH127 CMS_RS00290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMS_RS00295 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS00295 PF12911 N-terminal TM domain of oligopeptide transport permease C CMS_RS00300 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS00305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS00305 PF00005 ABC transporter CMS_RS00310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS00310 PF00005 ABC transporter CMS_RS00315 PF00561 alpha/beta hydrolase fold CMS_RS00320 PF00557 Metallopeptidase family M24 CMS_RS00320 PF05195 Aminopeptidase P, N-terminal domain CMS_RS00325 PF01266 FAD dependent oxidoreductase CMS_RS00335 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS00335 PF04324 BFD-like [2Fe-2S] binding domain CMS_RS00340 PF00701 Dihydrodipicolinate synthetase family CMS_RS00345 PF05544 Proline racemase CMS_RS00350 PF00171 Aldehyde dehydrogenase family CMS_RS00385 PF00561 alpha/beta hydrolase fold CMS_RS00395 PF13229 Right handed beta helix region CMS_RS00400 PF13229 Right handed beta helix region CMS_RS00405 PF02397 Bacterial sugar transferase CMS_RS00420 PF00534 Glycosyl transferases group 1 CMS_RS00460 PF00723 Glycosyl hydrolases family 15 CMS_RS00465 PF01661 Macro domain CMS_RS00485 PF01464 Transglycosylase SLT domain CMS_RS00485 PF10145 Phage-related minor tail protein CMS_RS00485 PF01551 Peptidase family M23 CMS_RS00495 PF00719 Inorganic pyrophosphatase CMS_RS00500 PF01171 PP-loop family CMS_RS00500 PF09179 TilS substrate binding domain CMS_RS00505 PF00156 Phosphoribosyl transferase domain CMS_RS00510 PF01434 Peptidase family M41 CMS_RS00510 PF00004 ATPase family associated with various cellular activities (AAA) CMS_RS00510 PF17862 AAA+ lid domain CMS_RS00515 PF01227 GTP cyclohydrolase I CMS_RS00520 PF00809 Pterin binding enzyme CMS_RS00530 PF02152 Dihydroneopterin aldolase CMS_RS00555 PF02569 Pantoate-beta-alanine ligase CMS_RS00560 PF01336 OB-fold nucleic acid binding domain CMS_RS00560 PF00152 tRNA synthetases class II (D, K and N) CMS_RS00570 PF07724 AAA domain (Cdc48 subfamily) CMS_RS00570 PF02861 Clp amino terminal domain, pathogenicity island component CMS_RS00570 PF00004 ATPase family associated with various cellular activities (AAA) CMS_RS00570 PF17871 AAA lid domain CMS_RS00570 PF10431 C-terminal, D2-small domain, of ClpB protein CMS_RS00575 PF01370 NAD dependent epimerase/dehydratase family CMS_RS00580 PF00248 Aldo/keto reductase family CMS_RS00585 PF00466 Ribosomal protein L10 CMS_RS00590 PF16320 Ribosomal protein L7/L12 dimerisation domain CMS_RS00590 PF00542 Ribosomal protein L7/L12 C-terminal domain CMS_RS00595 PF00196 Bacterial regulatory proteins, luxR family CMS_RS00605 PF07690 Major Facilitator Superfamily CMS_RS00610 PF00356 Bacterial regulatory proteins, lacI family CMS_RS00615 PF01547 Bacterial extracellular solute-binding protein CMS_RS00620 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS00630 PF00664 ABC transporter transmembrane region CMS_RS00630 PF00005 ABC transporter CMS_RS00645 PF00571 CBS domain CMS_RS00645 PF00291 Pyridoxal-phosphate dependent enzyme CMS_RS00650 PF01053 Cys/Met metabolism PLP-dependent enzyme CMS_RS00655 PF00075 RNase H CMS_RS00660 PF00356 Bacterial regulatory proteins, lacI family CMS_RS00665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CMS_RS00665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CMS_RS00670 PF00596 Class II Aldolase and Adducin N-terminal domain CMS_RS00675 PF11762 L-arabinose isomerase C-terminal domain CMS_RS00675 PF02610 L-arabinose isomerase CMS_RS00680 PF13407 Periplasmic binding protein domain CMS_RS00685 PF00005 ABC transporter CMS_RS00690 PF02653 Branched-chain amino acid transport system / permease component CMS_RS00715 PF01261 Xylose isomerase-like TIM barrel CMS_RS00720 PF00232 Glycosyl hydrolase family 1 CMS_RS00730 PF01047 MarR family CMS_RS00735 PF03466 LysR substrate binding domain CMS_RS00735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMS_RS00745 PF07690 Major Facilitator Superfamily CMS_RS00770 PF00196 Bacterial regulatory proteins, luxR family CMS_RS00775 PF13460 NAD(P)H-binding CMS_RS00780 PF07085 DRTGG domain CMS_RS00780 PF01515 Phosphate acetyl/butaryl transferase CMS_RS00785 PF00871 Acetokinase family CMS_RS00805 PF12169 DNA polymerase III subunits gamma and tau domain III CMS_RS00810 PF13662 Toprim domain CMS_RS00810 PF02132 RecR protein CMS_RS00815 PF13840 ACT domain CMS_RS00815 PF01842 ACT domain CMS_RS00815 PF00696 Amino acid kinase family CMS_RS00820 PF01118 Semialdehyde dehydrogenase, NAD binding domain CMS_RS00820 PF02774 Semialdehyde dehydrogenase, dimerisation domain CMS_RS00825 PF06039 Malate:quinone oxidoreductase (Mqo) CMS_RS00840 PF00265 Thymidine kinase CMS_RS00845 PF13614 AAA domain CMS_RS00845 PF13807 G-rich domain on putative tyrosine kinase CMS_RS00845 PF02706 Chain length determinant protein CMS_RS00875 PF00296 Luciferase-like monooxygenase CMS_RS00880 PF00905 Penicillin binding protein transpeptidase domain CMS_RS00880 PF00912 Transglycosylase CMS_RS00885 PF01757 Acyltransferase family CMS_RS00905 PF00905 Penicillin binding protein transpeptidase domain CMS_RS00905 PF00912 Transglycosylase CMS_RS00920 PF13193 AMP-binding enzyme C-terminal domain CMS_RS00920 PF00501 AMP-binding enzyme CMS_RS00920 PF16177 Acetyl-coenzyme A synthetase N-terminus CMS_RS00925 PF00437 Type II/IV secretion system protein CMS_RS00950 PF01751 Toprim domain CMS_RS00950 PF13368 Topoisomerase C-terminal repeat CMS_RS00950 PF01131 DNA topoisomerase CMS_RS00955 PF02223 Thymidylate kinase CMS_RS00960 PF09115 DNA polymerase III, delta subunit, C terminal CMS_RS00965 PF00561 alpha/beta hydrolase fold CMS_RS00975 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CMS_RS00980 PF00857 Isochorismatase family CMS_RS00985 PF00171 Aldehyde dehydrogenase family CMS_RS00990 PF00588 SpoU rRNA Methylase family CMS_RS01000 PF00005 ABC transporter CMS_RS01000 PF00664 ABC transporter transmembrane region CMS_RS01005 PF00005 ABC transporter CMS_RS01025 PF00294 pfkB family carbohydrate kinase CMS_RS01060 PF07690 Major Facilitator Superfamily CMS_RS01060 PF00083 Sugar (and other) transporter CMS_RS01065 PF07690 Major Facilitator Superfamily CMS_RS01065 PF00083 Sugar (and other) transporter CMS_RS01090 PF04229 GrpB protein CMS_RS01130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS01130 PF13426 PAS domain CMS_RS01130 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS01130 PF00672 HAMP domain CMS_RS01140 PF00486 Transcriptional regulatory protein, C terminal CMS_RS01140 PF00072 Response regulator receiver domain CMS_RS01165 PF04542 Sigma-70 region 2 CMS_RS01165 PF08281 Sigma-70, region 4 CMS_RS01180 PF00156 Phosphoribosyl transferase domain CMS_RS01195 PF05977 Transmembrane secretion effector CMS_RS01200 PF13344 Haloacid dehalogenase-like hydrolase CMS_RS01205 PF00149 Calcineurin-like phosphoesterase CMS_RS01210 PF05532 CsbD-like CMS_RS01220 PF00270 DEAD/DEAH box helicase CMS_RS01220 PF00271 Helicase conserved C-terminal domain CMS_RS01220 PF09382 RQC domain CMS_RS01220 PF16124 RecQ zinc-binding CMS_RS01220 PF00570 HRDC domain CMS_RS01225 PF01555 DNA methylase CMS_RS01240 PF00266 Aminotransferase class-V CMS_RS01250 PF00534 Glycosyl transferases group 1 CMS_RS01250 PF00862 Sucrose synthase CMS_RS01255 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CMS_RS01265 PF04174 A circularly permuted ATPgrasp CMS_RS01275 PF08379 Bacterial transglutaminase-like N-terminal region CMS_RS01275 PF01841 Transglutaminase-like superfamily CMS_RS01285 PF00583 Acetyltransferase (GNAT) family CMS_RS01320 PF04185 Phosphoesterase family CMS_RS01320 PF05506 Domain of unknown function (DUF756) CMS_RS01335 PF00665 Integrase core domain CMS_RS01340 PF00753 Metallo-beta-lactamase superfamily CMS_RS01345 PF04561 RNA polymerase Rpb2, domain 2 CMS_RS01345 PF04563 RNA polymerase beta subunit CMS_RS01345 PF04565 RNA polymerase Rpb2, domain 3 CMS_RS01345 PF10385 RNA polymerase beta subunit external 1 domain CMS_RS01345 PF00562 RNA polymerase Rpb2, domain 6 CMS_RS01345 PF04560 RNA polymerase Rpb2, domain 7 CMS_RS01350 PF04997 RNA polymerase Rpb1, domain 1 CMS_RS01350 PF00623 RNA polymerase Rpb1, domain 2 CMS_RS01350 PF04983 RNA polymerase Rpb1, domain 3 CMS_RS01350 PF05000 RNA polymerase Rpb1, domain 4 CMS_RS01350 PF04998 RNA polymerase Rpb1, domain 5 CMS_RS01360 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMS_RS01365 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS01370 PF00005 ABC transporter CMS_RS01385 PF00164 Ribosomal protein S12/S23 CMS_RS01390 PF00177 Ribosomal protein S7p/S5e CMS_RS01395 PF00009 Elongation factor Tu GTP binding domain CMS_RS01395 PF00679 Elongation factor G C-terminus CMS_RS01395 PF14492 Elongation Factor G, domain II CMS_RS01395 PF03144 Elongation factor Tu domain 2 CMS_RS01395 PF03764 Elongation factor G, domain IV CMS_RS01400 PF00009 Elongation factor Tu GTP binding domain CMS_RS01400 PF03143 Elongation factor Tu C-terminal domain CMS_RS01400 PF03144 Elongation factor Tu domain 2 CMS_RS01410 PF00338 Ribosomal protein S10p/S20e CMS_RS01415 PF00297 Ribosomal protein L3 CMS_RS01420 PF00573 Ribosomal protein L4/L1 family CMS_RS01425 PF00276 Ribosomal protein L23 CMS_RS01430 PF03947 Ribosomal Proteins L2, C-terminal domain CMS_RS01430 PF00181 Ribosomal Proteins L2, RNA binding domain CMS_RS01435 PF00203 Ribosomal protein S19 CMS_RS01440 PF00237 Ribosomal protein L22p/L17e CMS_RS01445 PF00189 Ribosomal protein S3, C-terminal domain CMS_RS01445 PF07650 KH domain CMS_RS01450 PF00252 Ribosomal protein L16p/L10e CMS_RS01455 PF00831 Ribosomal L29 protein CMS_RS01460 PF00366 Ribosomal protein S17 CMS_RS01465 PF00238 Ribosomal protein L14p/L23e CMS_RS01470 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CMS_RS01475 PF00673 ribosomal L5P family C-terminus CMS_RS01475 PF00281 Ribosomal protein L5 CMS_RS01480 PF00410 Ribosomal protein S8 CMS_RS01485 PF00347 Ribosomal protein L6 CMS_RS01490 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CMS_RS01495 PF03719 Ribosomal protein S5, C-terminal domain CMS_RS01495 PF00333 Ribosomal protein S5, N-terminal domain CMS_RS01500 PF00327 Ribosomal protein L30p/L7e CMS_RS01505 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CMS_RS01510 PF00344 SecY translocase CMS_RS01520 PF00557 Metallopeptidase family M24 CMS_RS01525 PF08279 HTH domain CMS_RS01525 PF05043 Mga helix-turn-helix domain CMS_RS01525 PF00874 PRD domain CMS_RS01525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMS_RS01535 PF00381 PTS HPr component phosphorylation site CMS_RS01540 PF02896 PEP-utilising enzyme, TIM barrel domain CMS_RS01540 PF00391 PEP-utilising enzyme, mobile domain CMS_RS01540 PF05524 PEP-utilising enzyme, N-terminal CMS_RS01545 PF02378 Phosphotransferase system, EIIC CMS_RS01545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CMS_RS01550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMS_RS01555 PF08125 Mannitol dehydrogenase C-terminal domain CMS_RS01555 PF01232 Mannitol dehydrogenase Rossmann domain CMS_RS01560 PF01176 Translation initiation factor 1A / IF-1 CMS_RS01565 PF00444 Ribosomal protein L36 CMS_RS01570 PF00416 Ribosomal protein S13/S18 CMS_RS01575 PF00411 Ribosomal protein S11 CMS_RS01580 PF01000 RNA polymerase Rpb3/RpoA insert domain CMS_RS01580 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CMS_RS01580 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CMS_RS01585 PF01196 Ribosomal protein L17 CMS_RS01595 PF01416 tRNA pseudouridine synthase CMS_RS01600 PF00572 Ribosomal protein L13 CMS_RS01605 PF00380 Ribosomal protein S9/S16 CMS_RS01610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMS_RS01610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMS_RS01610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMS_RS01610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMS_RS01615 PF00665 Integrase core domain CMS_RS01630 PF13443 Cro/C1-type HTH DNA-binding domain CMS_RS01660 PF00704 Glycosyl hydrolases family 18 CMS_RS01675 PF00005 ABC transporter CMS_RS01680 PF01497 Periplasmic binding protein CMS_RS01685 PF01032 FecCD transport family CMS_RS01695 PF00196 Bacterial regulatory proteins, luxR family CMS_RS01695 PF00072 Response regulator receiver domain CMS_RS01710 PF14552 Tautomerase enzyme CMS_RS01725 PF12706 Beta-lactamase superfamily domain CMS_RS01725 PF17770 Ribonuclease J C-terminal domain CMS_RS01725 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CMS_RS01730 PF00916 Sulfate permease family CMS_RS01730 PF01740 STAS domain CMS_RS01740 PF00171 Aldehyde dehydrogenase family CMS_RS01755 PF00155 Aminotransferase class I and II CMS_RS01765 PF01053 Cys/Met metabolism PLP-dependent enzyme CMS_RS01770 PF02661 Fic/DOC family CMS_RS01770 PF13784 Fic/DOC family N-terminal CMS_RS01775 PF00440 Bacterial regulatory proteins, tetR family CMS_RS01775 PF17932 Tetracyclin repressor-like, C-terminal domain CMS_RS01780 PF07690 Major Facilitator Superfamily CMS_RS01820 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS01825 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS01840 PF00703 Glycosyl hydrolases family 2 CMS_RS01840 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CMS_RS01840 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CMS_RS01840 PF16355 Domain of unknown function (DUF4982) CMS_RS01840 PF02837 Glycosyl hydrolases family 2, sugar binding domain CMS_RS01850 PF03176 MMPL family CMS_RS01855 PF17754 MftR C-terminal domain CMS_RS01855 PF00440 Bacterial regulatory proteins, tetR family CMS_RS01865 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS01870 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS01880 PF00296 Luciferase-like monooxygenase CMS_RS01885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CMS_RS01885 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CMS_RS01885 PF02770 Acyl-CoA dehydrogenase, middle domain CMS_RS01895 PF01569 PAP2 superfamily CMS_RS01905 PF00472 RF-1 domain CMS_RS01905 PF03462 PCRF domain CMS_RS01930 PF02801 Beta-ketoacyl synthase, C-terminal domain CMS_RS01930 PF08659 KR domain CMS_RS01930 PF00550 Phosphopantetheine attachment site CMS_RS01930 PF14765 Polyketide synthase dehydratase CMS_RS01930 PF00698 Acyl transferase domain CMS_RS01930 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS01930 PF16197 Ketoacyl-synthetase C-terminal extension CMS_RS01930 PF00109 Beta-ketoacyl synthase, N-terminal domain CMS_RS01960 PF00144 Beta-lactamase CMS_RS01965 PF01569 PAP2 superfamily CMS_RS01970 PF01425 Amidase CMS_RS01985 PF04545 Sigma-70, region 4 CMS_RS01985 PF04539 Sigma-70 region 3 CMS_RS01985 PF04542 Sigma-70 region 2 CMS_RS01990 PF13520 Amino acid permease CMS_RS01995 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CMS_RS01995 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CMS_RS02000 PF08494 DEAD/H associated CMS_RS02000 PF00271 Helicase conserved C-terminal domain CMS_RS02000 PF00270 DEAD/DEAH box helicase CMS_RS02015 PF00440 Bacterial regulatory proteins, tetR family CMS_RS02020 PF00271 Helicase conserved C-terminal domain CMS_RS02020 PF00270 DEAD/DEAH box helicase CMS_RS02035 PF01878 EVE domain CMS_RS02065 PF07995 Glucose / Sorbosone dehydrogenase CMS_RS02075 PF00665 Integrase core domain CMS_RS02080 PF03099 Biotin/lipoate A/B protein ligase family CMS_RS02080 PF10437 Bacterial lipoate protein ligase C-terminus CMS_RS02085 PF00583 Acetyltransferase (GNAT) family CMS_RS02100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMS_RS02100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMS_RS02100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMS_RS02100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMS_RS02105 PF00800 Prephenate dehydratase CMS_RS02115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMS_RS02115 PF02403 Seryl-tRNA synthetase N-terminal domain CMS_RS02130 PF03816 Cell envelope-related transcriptional attenuator domain CMS_RS02130 PF13399 LytR cell envelope-related transcriptional attenuator CMS_RS02145 PF00665 Integrase core domain CMS_RS02150 PF00356 Bacterial regulatory proteins, lacI family CMS_RS02160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CMS_RS02160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMS_RS02170 PF16657 Maltogenic Amylase, C-terminal domain CMS_RS02170 PF02903 Alpha amylase, N-terminal ig-like domain CMS_RS02170 PF00128 Alpha amylase, catalytic domain CMS_RS02180 PF00072 Response regulator receiver domain CMS_RS02180 PF00196 Bacterial regulatory proteins, luxR family CMS_RS02200 PF02096 60Kd inner membrane protein CMS_RS02200 PF14849 YidC periplasmic domain CMS_RS02220 PF00248 Aldo/keto reductase family CMS_RS02230 PF02261 Aspartate decarboxylase CMS_RS02235 PF03631 Virulence factor BrkB CMS_RS02240 PF00875 DNA photolyase CMS_RS02240 PF03441 FAD binding domain of DNA photolyase CMS_RS02275 PF00486 Transcriptional regulatory protein, C terminal CMS_RS02275 PF00072 Response regulator receiver domain CMS_RS02285 PF02669 K+-transporting ATPase, c chain CMS_RS02295 PF03814 Potassium-transporting ATPase A subunit CMS_RS02325 PF01925 Sulfite exporter TauE/SafE CMS_RS02340 PF03861 ANTAR domain CMS_RS02340 PF00072 Response regulator receiver domain CMS_RS02360 PF00072 Response regulator receiver domain CMS_RS02360 PF00196 Bacterial regulatory proteins, luxR family CMS_RS02365 PF00672 HAMP domain CMS_RS02365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS02365 PF07730 Histidine kinase CMS_RS02365 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CMS_RS02375 PF00005 ABC transporter CMS_RS02375 PF09383 NIL domain CMS_RS02410 PF00392 Bacterial regulatory proteins, gntR family CMS_RS02435 PF00202 Aminotransferase class-III CMS_RS02475 PF03364 Polyketide cyclase / dehydrase and lipid transport CMS_RS02490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CMS_RS02495 PF00072 Response regulator receiver domain CMS_RS02495 PF00196 Bacterial regulatory proteins, luxR family CMS_RS02500 PF07730 Histidine kinase CMS_RS02510 PF17926 Tetracyclin repressor-like, C-terminal domain CMS_RS02510 PF00440 Bacterial regulatory proteins, tetR family CMS_RS02515 PF07690 Major Facilitator Superfamily CMS_RS02530 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS02530 PF00107 Zinc-binding dehydrogenase CMS_RS02545 PF00291 Pyridoxal-phosphate dependent enzyme CMS_RS02550 PF00132 Bacterial transferase hexapeptide (six repeats) CMS_RS02565 PF00665 Integrase core domain CMS_RS02570 PF00485 Phosphoribulokinase / Uridine kinase family CMS_RS02575 PF01380 SIS domain CMS_RS02580 PF01648 4'-phosphopantetheinyl transferase superfamily CMS_RS02585 PF00842 Alanine racemase, C-terminal domain CMS_RS02585 PF01168 Alanine racemase, N-terminal domain CMS_RS02590 PF01168 Alanine racemase, N-terminal domain CMS_RS02590 PF00842 Alanine racemase, C-terminal domain CMS_RS02595 PF00583 Acetyltransferase (GNAT) family CMS_RS02595 PF00814 Glycoprotease family CMS_RS02600 PF00814 Glycoprotease family CMS_RS02615 PF00166 Chaperonin 10 Kd subunit CMS_RS02620 PF00892 EamA-like transporter family CMS_RS02625 PF13458 Periplasmic binding protein CMS_RS02630 PF00005 ABC transporter CMS_RS02635 PF00005 ABC transporter CMS_RS02635 PF12399 Branched-chain amino acid ATP-binding cassette transporter CMS_RS02640 PF11862 Domain of unknown function (DUF3382) CMS_RS02640 PF02653 Branched-chain amino acid transport system / permease component CMS_RS02645 PF02653 Branched-chain amino acid transport system / permease component CMS_RS02650 PF00478 IMP dehydrogenase / GMP reductase domain CMS_RS02650 PF00571 CBS domain CMS_RS02660 PF00478 IMP dehydrogenase / GMP reductase domain CMS_RS02670 PF00999 Sodium/hydrogen exchanger family CMS_RS02680 PF12823 Domain of unknown function (DUF3817) CMS_RS02685 PF00117 Glutamine amidotransferase class-I CMS_RS02685 PF00958 GMP synthase C terminal domain CMS_RS02685 PF02540 NAD synthase CMS_RS02695 PF03009 Glycerophosphoryl diester phosphodiesterase family CMS_RS02730 PF00005 ABC transporter CMS_RS02750 PF03741 Integral membrane protein TerC family CMS_RS02755 PF00486 Transcriptional regulatory protein, C terminal CMS_RS02755 PF00072 Response regulator receiver domain CMS_RS02760 PF00672 HAMP domain CMS_RS02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS02760 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS02770 PF00583 Acetyltransferase (GNAT) family CMS_RS02785 PF01022 Bacterial regulatory protein, arsR family CMS_RS02790 PF06745 KaiC CMS_RS02790 PF18073 Rubredoxin metal binding domain CMS_RS02815 PF00005 ABC transporter CMS_RS02820 PF10099 Anti-sigma-K factor rskA CMS_RS02825 PF04542 Sigma-70 region 2 CMS_RS02825 PF04545 Sigma-70, region 4 CMS_RS02890 PF01263 Aldose 1-epimerase CMS_RS02895 PF00455 DeoR C terminal sensor domain CMS_RS02895 PF08220 DeoR-like helix-turn-helix domain CMS_RS02900 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CMS_RS02900 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CMS_RS02905 PF00288 GHMP kinases N terminal domain CMS_RS02905 PF10509 Galactokinase galactose-binding signature CMS_RS02905 PF08544 GHMP kinases C terminal CMS_RS02915 PF00132 Bacterial transferase hexapeptide (six repeats) CMS_RS02920 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CMS_RS02920 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CMS_RS02925 PF00464 Serine hydroxymethyltransferase CMS_RS02930 PF00128 Alpha amylase, catalytic domain CMS_RS02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMS_RS02960 PF02742 Iron dependent repressor, metal binding and dimerisation domain CMS_RS02960 PF18357 Diphteria toxin repressor SH3 domain CMS_RS02960 PF01325 Iron dependent repressor, N-terminal DNA binding domain CMS_RS02965 PF01566 Natural resistance-associated macrophage protein CMS_RS02965 PF03358 NADPH-dependent FMN reductase CMS_RS02975 PF07690 Major Facilitator Superfamily CMS_RS02980 PF00551 Formyl transferase CMS_RS02985 PF00082 Subtilase family CMS_RS02985 PF05922 Peptidase inhibitor I9 CMS_RS02990 PF00082 Subtilase family CMS_RS02990 PF05922 Peptidase inhibitor I9 CMS_RS02995 PF00180 Isocitrate/isopropylmalate dehydrogenase CMS_RS03010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMS_RS03030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMS_RS03030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMS_RS03030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMS_RS03030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMS_RS03035 PF01048 Phosphorylase superfamily CMS_RS03040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMS_RS03040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS03045 PF00364 Biotin-requiring enzyme CMS_RS03045 PF02785 Biotin carboxylase C-terminal domain CMS_RS03045 PF00289 Biotin carboxylase, N-terminal domain CMS_RS03045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CMS_RS03055 PF02545 Maf-like protein CMS_RS03060 PF05958 tRNA (Uracil-5-)-methyltransferase CMS_RS03060 PF01938 TRAM domain CMS_RS03090 PF01039 Carboxyl transferase domain CMS_RS03110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CMS_RS03110 PF02222 ATP-grasp domain CMS_RS03115 PF00731 AIR carboxylase CMS_RS03120 PF03816 Cell envelope-related transcriptional attenuator domain CMS_RS03130 PF00005 ABC transporter CMS_RS03135 PF01061 ABC-2 type transporter CMS_RS03140 PF04321 RmlD substrate binding domain CMS_RS03145 PF16363 GDP-mannose 4,6 dehydratase CMS_RS03155 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CMS_RS03160 PF00483 Nucleotidyl transferase CMS_RS03165 PF00535 Glycosyl transferase family 2 CMS_RS03190 PF00535 Glycosyl transferase family 2 CMS_RS03195 PF03275 UDP-galactopyranose mutase CMS_RS03200 PF17994 Galactofuranosyltransferase 2 N-terminal CMS_RS03225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CMS_RS03225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CMS_RS03225 PF02770 Acyl-CoA dehydrogenase, middle domain CMS_RS03230 PF01238 Phosphomannose isomerase type I CMS_RS03235 PF01370 NAD dependent epimerase/dehydratase family CMS_RS03245 PF02467 Transcription factor WhiB CMS_RS03270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMS_RS03270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMS_RS03270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMS_RS03270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMS_RS03275 PF02583 Metal-sensitive transcriptional repressor CMS_RS03285 PF00403 Heavy-metal-associated domain CMS_RS03290 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CMS_RS03290 PF05221 S-adenosyl-L-homocysteine hydrolase CMS_RS03305 PF01915 Glycosyl hydrolase family 3 C-terminal domain CMS_RS03305 PF00933 Glycosyl hydrolase family 3 N terminal domain CMS_RS03305 PF07691 PA14 domain CMS_RS03305 PF14310 Fibronectin type III-like domain CMS_RS03315 PF00440 Bacterial regulatory proteins, tetR family CMS_RS03315 PF13977 BetI-type transcriptional repressor, C-terminal CMS_RS03330 PF07726 ATPase family associated with various cellular activities (AAA) CMS_RS03330 PF17863 AAA lid domain CMS_RS03350 PF00072 Response regulator receiver domain CMS_RS03350 PF00486 Transcriptional regulatory protein, C terminal CMS_RS03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS03355 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS03355 PF00672 HAMP domain CMS_RS03360 PF10646 Sporulation and spore germination CMS_RS03360 PF10647 Lipoprotein LpqB beta-propeller domain CMS_RS03365 PF00156 Phosphoribosyl transferase domain CMS_RS03370 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CMS_RS03370 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CMS_RS03375 PF07517 SecA DEAD-like domain CMS_RS03375 PF01043 SecA preprotein cross-linking domain CMS_RS03375 PF07516 SecA Wing and Scaffold domain CMS_RS03400 PF12282 Signal transduction histidine kinase CMS_RS03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS03400 PF07568 Histidine kinase CMS_RS03405 PF02467 Transcription factor WhiB CMS_RS03415 PF00578 AhpC/TSA family CMS_RS03425 PF02559 CarD-like/TRCF domain CMS_RS03445 PF00324 Amino acid permease CMS_RS03455 PF05977 Transmembrane secretion effector CMS_RS03470 PF00665 Integrase core domain CMS_RS03480 PF13631 Cytochrome b(N-terminal)/b6/petB CMS_RS03485 PF00355 Rieske [2Fe-2S] domain CMS_RS03490 PF00034 Cytochrome c CMS_RS03490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CMS_RS03495 PF00510 Cytochrome c oxidase subunit III CMS_RS03500 PF00591 Glycosyl transferase family, a/b domain CMS_RS03500 PF02885 Glycosyl transferase family, helical bundle domain CMS_RS03505 PF02586 SOS response associated peptidase (SRAP) CMS_RS03515 PF00230 Major intrinsic protein CMS_RS03520 PF02733 Dak1 domain CMS_RS03525 PF02734 DAK2 domain CMS_RS03530 PF00381 PTS HPr component phosphorylation site CMS_RS03530 PF00391 PEP-utilising enzyme, mobile domain CMS_RS03530 PF05524 PEP-utilising enzyme, N-terminal CMS_RS03530 PF03610 PTS system fructose IIA component CMS_RS03545 PF00255 Glutathione peroxidase CMS_RS03550 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CMS_RS03550 PF01266 FAD dependent oxidoreductase CMS_RS03580 PF03129 Anticodon binding domain CMS_RS03580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CMS_RS03580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMS_RS03585 PF01230 HIT domain CMS_RS03590 PF01680 SOR/SNZ family CMS_RS03595 PF01174 SNO glutamine amidotransferase family CMS_RS03600 PF01709 Transcriptional regulator CMS_RS03605 PF02075 Crossover junction endodeoxyribonuclease RuvC CMS_RS03610 PF07499 RuvA, C-terminal domain CMS_RS03610 PF01330 RuvA N terminal domain CMS_RS03615 PF17864 RuvB AAA lid domain CMS_RS03615 PF05491 RuvB C-terminal winged helix domain CMS_RS03615 PF05496 Holliday junction DNA helicase RuvB P-loop domain CMS_RS03625 PF07549 SecD/SecF GG Motif CMS_RS03625 PF02355 Protein export membrane protein CMS_RS03630 PF07549 SecD/SecF GG Motif CMS_RS03630 PF02355 Protein export membrane protein CMS_RS03635 PF00581 Rhodanese-like domain CMS_RS03640 PF02824 TGS domain CMS_RS03640 PF13291 ACT domain CMS_RS03640 PF04607 Region found in RelA / SpoT proteins CMS_RS03650 PF03993 Domain of Unknown Function (DUF349) CMS_RS03660 PF00004 ATPase family associated with various cellular activities (AAA) CMS_RS03660 PF16193 AAA C-terminal domain CMS_RS03660 PF12002 MgsA AAA+ ATPase C terminal CMS_RS03665 PF01479 S4 domain CMS_RS03665 PF00163 Ribosomal protein S4/S9 N-terminal domain CMS_RS03675 PF02272 DHHA1 domain CMS_RS03675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CMS_RS03675 PF01411 tRNA synthetases class II (A) CMS_RS03680 PF03652 Holliday junction resolvase CMS_RS03685 PF02618 YceG-like family CMS_RS03690 PF01488 Shikimate / quinate 5-dehydrogenase CMS_RS03690 PF08501 Shikimate dehydrogenase substrate binding domain CMS_RS03690 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CMS_RS03695 PF01264 Chorismate synthase CMS_RS03700 PF01202 Shikimate kinase CMS_RS03705 PF01761 3-dehydroquinate synthase CMS_RS03710 PF00106 short chain dehydrogenase CMS_RS03725 PF07726 ATPase family associated with various cellular activities (AAA) CMS_RS03725 PF17863 AAA lid domain CMS_RS03740 PF00271 Helicase conserved C-terminal domain CMS_RS03740 PF00270 DEAD/DEAH box helicase CMS_RS03740 PF17191 RecG wedge domain CMS_RS03745 PF01467 Cytidylyltransferase-like CMS_RS03750 PF02620 Large ribosomal RNA subunit accumulation protein YceD CMS_RS03755 PF01783 Ribosomal L32p protein family CMS_RS03760 PF14622 Ribonuclease-III-like CMS_RS03760 PF00035 Double-stranded RNA binding motif CMS_RS03765 PF06827 Zinc finger found in FPG and IleRS CMS_RS03765 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CMS_RS03765 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CMS_RS03775 PF06470 SMC proteins Flexible Hinge Domain CMS_RS03775 PF02463 RecF/RecN/SMC N terminal domain CMS_RS03780 PF02881 SRP54-type protein, helical bundle domain CMS_RS03780 PF00448 SRP54-type protein, GTPase domain CMS_RS03785 PF00448 SRP54-type protein, GTPase domain CMS_RS03785 PF02881 SRP54-type protein, helical bundle domain CMS_RS03785 PF02978 Signal peptide binding domain CMS_RS03795 PF02674 Colicin V production protein CMS_RS03800 PF04107 Glutamate-cysteine ligase family 2(GCS2) CMS_RS03805 PF00886 Ribosomal protein S16 CMS_RS03815 PF01782 RimM N-terminal domain CMS_RS03820 PF01746 tRNA (Guanine-1)-methyltransferase CMS_RS03825 PF00557 Metallopeptidase family M24 CMS_RS03835 PF01245 Ribosomal protein L19 CMS_RS03840 PF10502 Signal peptidase, peptidase S26 CMS_RS03845 PF01351 Ribonuclease HII CMS_RS03850 PF10611 Protein of unknown function (DUF2469) CMS_RS03855 PF02021 Uncharacterised protein family UPF0102 CMS_RS03860 PF13335 Magnesium chelatase, subunit ChlI C-terminal CMS_RS03860 PF01078 Magnesium chelatase, subunit ChlI CMS_RS03865 PF17782 DprA winged helix domain CMS_RS03865 PF02481 DNA recombination-mediator protein A CMS_RS03870 PF00589 Phage integrase family CMS_RS03870 PF02899 Phage integrase, N-terminal SAM-like domain CMS_RS03880 PF00083 Sugar (and other) transporter CMS_RS03885 PF00318 Ribosomal protein S2 CMS_RS03890 PF00889 Elongation factor TS CMS_RS03895 PF00696 Amino acid kinase family CMS_RS03900 PF01765 Ribosome recycling factor CMS_RS03920 PF00999 Sodium/hydrogen exchanger family CMS_RS03935 PF01594 AI-2E family transporter CMS_RS03950 PF00085 Thioredoxin CMS_RS03955 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CMS_RS03955 PF00128 Alpha amylase, catalytic domain CMS_RS03955 PF02806 Alpha amylase, C-terminal all-beta domain CMS_RS03960 PF11896 Domain of unknown function (DUF3416) CMS_RS03970 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS03975 PF06722 Protein of unknown function (DUF1205) CMS_RS03990 PF01266 FAD dependent oxidoreductase CMS_RS04000 PF05448 Acetyl xylan esterase (AXE1) CMS_RS04005 PF00440 Bacterial regulatory proteins, tetR family CMS_RS04015 PF00005 ABC transporter CMS_RS04015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS04020 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04020 PF12911 N-terminal TM domain of oligopeptide transport permease C CMS_RS04025 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CMS_RS04095 PF02805 Metal binding domain of Ada CMS_RS04095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CMS_RS04095 PF12833 Helix-turn-helix domain CMS_RS04100 PF04542 Sigma-70 region 2 CMS_RS04100 PF04545 Sigma-70, region 4 CMS_RS04105 PF00072 Response regulator receiver domain CMS_RS04105 PF00486 Transcriptional regulatory protein, C terminal CMS_RS04115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMS_RS04115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CMS_RS04135 PF00356 Bacterial regulatory proteins, lacI family CMS_RS04160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CMS_RS04165 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CMS_RS04175 PF00293 NUDIX domain CMS_RS04180 PF01820 D-ala D-ala ligase N-terminus CMS_RS04180 PF07478 D-ala D-ala ligase C-terminus CMS_RS04200 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04205 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04215 PF01113 Dihydrodipicolinate reductase, N-terminus CMS_RS04215 PF05173 Dihydrodipicolinate reductase, C-terminus CMS_RS04220 PF01047 MarR family CMS_RS04220 PF00480 ROK family CMS_RS04225 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS04235 PF01817 Chorismate mutase type II CMS_RS04240 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CMS_RS04255 PF05191 Adenylate kinase, active site lid CMS_RS04265 PF00892 EamA-like transporter family CMS_RS04295 PF00107 Zinc-binding dehydrogenase CMS_RS04295 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS04300 PF04545 Sigma-70, region 4 CMS_RS04300 PF04542 Sigma-70 region 2 CMS_RS04305 PF13490 Putative zinc-finger CMS_RS04340 PF00356 Bacterial regulatory proteins, lacI family CMS_RS04345 PF01547 Bacterial extracellular solute-binding protein CMS_RS04350 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04355 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04360 PF01915 Glycosyl hydrolase family 3 C-terminal domain CMS_RS04360 PF00933 Glycosyl hydrolase family 3 N terminal domain CMS_RS04360 PF14310 Fibronectin type III-like domain CMS_RS04410 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CMS_RS04430 PF13192 Thioredoxin domain CMS_RS04430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS04435 PF07724 AAA domain (Cdc48 subfamily) CMS_RS04435 PF02861 Clp amino terminal domain, pathogenicity island component CMS_RS04435 PF10431 C-terminal, D2-small domain, of ClpB protein CMS_RS04435 PF00004 ATPase family associated with various cellular activities (AAA) CMS_RS04435 PF17871 AAA lid domain CMS_RS04440 PF00005 ABC transporter CMS_RS04465 PF16874 Glycosyl hydrolase family 36 C-terminal domain CMS_RS04465 PF16875 Glycosyl hydrolase family 36 N-terminal domain CMS_RS04475 PF00248 Aldo/keto reductase family CMS_RS04505 PF08924 Domain of unknown function (DUF1906) CMS_RS04505 PF01471 Putative peptidoglycan binding domain CMS_RS04535 PF03780 Asp23 family, cell envelope-related function CMS_RS04550 PF00665 Integrase core domain CMS_RS04565 PF07702 UTRA domain CMS_RS04565 PF00392 Bacterial regulatory proteins, gntR family CMS_RS04570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CMS_RS04570 PF00367 phosphotransferase system, EIIB CMS_RS04570 PF02378 Phosphotransferase system, EIIC CMS_RS04580 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CMS_RS04585 PF13382 Adenine deaminase C-terminal domain CMS_RS04585 PF01979 Amidohydrolase family CMS_RS04595 PF11975 Family 4 glycosyl hydrolase C-terminal domain CMS_RS04595 PF02056 Family 4 glycosyl hydrolase CMS_RS04600 PF08220 DeoR-like helix-turn-helix domain CMS_RS04600 PF00455 DeoR C terminal sensor domain CMS_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04620 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04625 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CMS_RS04630 PF16353 Domain of unknown function(DUF4981) CMS_RS04630 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CMS_RS04630 PF02837 Glycosyl hydrolases family 2, sugar binding domain CMS_RS04630 PF02929 Beta galactosidase small chain CMS_RS04640 PF03358 NADPH-dependent FMN reductase CMS_RS04650 PF01032 FecCD transport family CMS_RS04655 PF00005 ABC transporter CMS_RS04665 PF00293 NUDIX domain CMS_RS04670 PF00356 Bacterial regulatory proteins, lacI family CMS_RS04675 PF00665 Integrase core domain CMS_RS04685 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04690 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS04700 PF08244 Glycosyl hydrolases family 32 C terminal CMS_RS04700 PF00251 Glycosyl hydrolases family 32 N-terminal domain CMS_RS04705 PF03780 Asp23 family, cell envelope-related function CMS_RS04710 PF00230 Major intrinsic protein CMS_RS04725 PF05656 Protein of unknown function (DUF805) CMS_RS04740 PF00005 ABC transporter CMS_RS04740 PF13732 Domain of unknown function (DUF4162) CMS_RS04750 PF08450 SMP-30/Gluconolactonase/LRE-like region CMS_RS04760 PF00106 short chain dehydrogenase CMS_RS04770 PF07690 Major Facilitator Superfamily CMS_RS04790 PF00196 Bacterial regulatory proteins, luxR family CMS_RS04790 PF00072 Response regulator receiver domain CMS_RS04795 PF07730 Histidine kinase CMS_RS04805 PF18370 Rhamnogalacturonan I lyases beta-sheet domain CMS_RS04810 PF07690 Major Facilitator Superfamily CMS_RS04830 PF01593 Flavin containing amine oxidoreductase CMS_RS04835 PF01040 UbiA prenyltransferase family CMS_RS04840 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CMS_RS04840 PF03033 Glycosyltransferase family 28 N-terminal domain CMS_RS04845 PF00106 short chain dehydrogenase CMS_RS04850 PF13411 MerR HTH family regulatory protein CMS_RS04870 PF01047 MarR family CMS_RS04875 PF02566 OsmC-like protein CMS_RS04920 PF13936 Helix-turn-helix domain CMS_RS04920 PF00665 Integrase core domain CMS_RS04925 PF00665 Integrase core domain CMS_RS04930 PF00561 alpha/beta hydrolase fold CMS_RS04950 PF04235 Protein of unknown function (DUF418) CMS_RS04955 PF00005 ABC transporter CMS_RS04955 PF13732 Domain of unknown function (DUF4162) CMS_RS04970 PF00072 Response regulator receiver domain CMS_RS04970 PF00196 Bacterial regulatory proteins, luxR family CMS_RS04975 PF13407 Periplasmic binding protein domain CMS_RS04980 PF00005 ABC transporter CMS_RS04985 PF02653 Branched-chain amino acid transport system / permease component CMS_RS05015 PF00672 HAMP domain CMS_RS05015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS05015 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS05015 PF13426 PAS domain CMS_RS05020 PF02028 BCCT, betaine/carnitine/choline family transporter CMS_RS05025 PF00781 Diacylglycerol kinase catalytic domain CMS_RS05030 PF02463 RecF/RecN/SMC N terminal domain CMS_RS05040 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS05040 PF00107 Zinc-binding dehydrogenase CMS_RS05050 PF04978 Protein of unknown function (DUF664) CMS_RS05065 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS05070 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS05075 PF01547 Bacterial extracellular solute-binding protein CMS_RS05080 PF00480 ROK family CMS_RS05100 PF01595 Cyclin M transmembrane N-terminal domain CMS_RS05100 PF00571 CBS domain CMS_RS05100 PF03471 Transporter associated domain CMS_RS05110 PF01494 FAD binding domain CMS_RS05135 PF01259 SAICAR synthetase CMS_RS05140 PF02843 Phosphoribosylglycinamide synthetase, C domain CMS_RS05140 PF02844 Phosphoribosylglycinamide synthetase, N domain CMS_RS05140 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CMS_RS05155 PF00156 Phosphoribosyl transferase domain CMS_RS05160 PF02769 AIR synthase related protein, C-terminal domain CMS_RS05160 PF00586 AIR synthase related protein, N-terminal domain CMS_RS05190 PF13520 Amino acid permease CMS_RS05200 PF00155 Aminotransferase class I and II CMS_RS05210 PF00128 Alpha amylase, catalytic domain CMS_RS05210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CMS_RS05220 PF00343 Carbohydrate phosphorylase CMS_RS05220 PF11897 Protein of unknown function (DUF3417) CMS_RS05230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CMS_RS05230 PF00128 Alpha amylase, catalytic domain CMS_RS05235 PF00266 Aminotransferase class-V CMS_RS05245 PF03120 NAD-dependent DNA ligase OB-fold domain CMS_RS05245 PF01653 NAD-dependent DNA ligase adenylation domain CMS_RS05245 PF12826 Helix-hairpin-helix motif CMS_RS05245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CMS_RS05255 PF02686 Glu-tRNAGln amidotransferase C subunit CMS_RS05260 PF01425 Amidase CMS_RS05265 PF02934 GatB/GatE catalytic domain CMS_RS05265 PF02637 GatB domain CMS_RS05270 PF00005 ABC transporter CMS_RS05285 PF00665 Integrase core domain CMS_RS05290 PF00501 AMP-binding enzyme CMS_RS05290 PF13193 AMP-binding enzyme C-terminal domain CMS_RS05375 PF00106 short chain dehydrogenase CMS_RS05380 PF00501 AMP-binding enzyme CMS_RS05380 PF13193 AMP-binding enzyme C-terminal domain CMS_RS05385 PF00106 short chain dehydrogenase CMS_RS05395 PF01546 Peptidase family M20/M25/M40 CMS_RS05395 PF07687 Peptidase dimerisation domain CMS_RS05400 PF00665 Integrase core domain CMS_RS05405 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CMS_RS05405 PF00326 Prolyl oligopeptidase family CMS_RS05405 PF07676 WD40-like Beta Propeller Repeat CMS_RS05420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMS_RS05420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMS_RS05420 PF00205 Thiamine pyrophosphate enzyme, central domain CMS_RS05430 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS05430 PF00107 Zinc-binding dehydrogenase CMS_RS05445 PF13409 Glutathione S-transferase, N-terminal domain CMS_RS05450 PF00271 Helicase conserved C-terminal domain CMS_RS05450 PF04434 SWIM zinc finger CMS_RS05450 PF00176 SNF2 family N-terminal domain CMS_RS05455 PF13936 Helix-turn-helix domain CMS_RS05455 PF00665 Integrase core domain CMS_RS05470 PF07690 Major Facilitator Superfamily CMS_RS05480 PF02581 Thiamine monophosphate synthase CMS_RS05480 PF03070 TENA/THI-4/PQQC family CMS_RS05480 PF08543 Phosphomethylpyrimidine kinase CMS_RS05485 PF02110 Hydroxyethylthiazole kinase family CMS_RS05490 PF00326 Prolyl oligopeptidase family CMS_RS05490 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CMS_RS05500 PF18085 Maltokinase N-terminal cap domain CMS_RS05505 PF00462 Glutaredoxin CMS_RS05510 PF01565 FAD binding domain CMS_RS05510 PF04030 D-arabinono-1,4-lactone oxidase CMS_RS05515 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CMS_RS05515 PF16353 Domain of unknown function(DUF4981) CMS_RS05515 PF02837 Glycosyl hydrolases family 2, sugar binding domain CMS_RS05515 PF02929 Beta galactosidase small chain CMS_RS05520 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS05525 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS05545 PF01145 SPFH domain / Band 7 family CMS_RS05545 PF15975 Flotillin CMS_RS05565 PF16123 Hydroxyacylglutathione hydrolase C-terminus CMS_RS05565 PF00753 Metallo-beta-lactamase superfamily CMS_RS05605 PF00282 Pyridoxal-dependent decarboxylase conserved domain CMS_RS05610 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CMS_RS05615 PF04183 IucA / IucC family CMS_RS05615 PF06276 Ferric iron reductase FhuF-like transporter CMS_RS05620 PF00011 Hsp20/alpha crystallin family CMS_RS05630 PF00106 short chain dehydrogenase CMS_RS05645 PF00107 Zinc-binding dehydrogenase CMS_RS05645 PF16884 N-terminal domain of oxidoreductase CMS_RS05650 PF03631 Virulence factor BrkB CMS_RS05655 PF01928 CYTH domain CMS_RS05655 PF05235 CHAD domain CMS_RS05660 PF00135 Carboxylesterase family CMS_RS05665 PF01384 Phosphate transporter family CMS_RS05675 PF00860 Permease family CMS_RS05700 PF10415 Fumarase C C-terminus CMS_RS05700 PF00206 Lyase CMS_RS05710 PF01557 Fumarylacetoacetate (FAA) hydrolase family CMS_RS05720 PF02735 Ku70/Ku80 beta-barrel domain CMS_RS05735 PF06029 AlkA N-terminal domain CMS_RS05735 PF12833 Helix-turn-helix domain CMS_RS05735 PF00730 HhH-GPD superfamily base excision DNA repair protein CMS_RS05735 PF02805 Metal binding domain of Ada CMS_RS05740 PF01565 FAD binding domain CMS_RS05740 PF02913 FAD linked oxidases, C-terminal domain CMS_RS05765 PF00196 Bacterial regulatory proteins, luxR family CMS_RS05765 PF00072 Response regulator receiver domain CMS_RS05785 PF00210 Ferritin-like domain CMS_RS05795 PF01965 DJ-1/PfpI family CMS_RS05805 PF01252 Signal peptidase (SPase) II CMS_RS05810 PF00248 Aldo/keto reductase family CMS_RS05820 PF00156 Phosphoribosyl transferase domain CMS_RS05840 PF00939 Sodium:sulfate symporter transmembrane region CMS_RS05850 PF05977 Transmembrane secretion effector CMS_RS05855 PF00312 Ribosomal protein S15 CMS_RS05860 PF01138 3' exoribonuclease family, domain 1 CMS_RS05860 PF00575 S1 RNA binding domain CMS_RS05860 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CMS_RS05860 PF00013 KH domain CMS_RS05870 PF01161 Phosphatidylethanolamine-binding protein CMS_RS05875 PF00248 Aldo/keto reductase family CMS_RS05890 PF05193 Peptidase M16 inactive domain CMS_RS05890 PF00675 Insulinase (Peptidase family M16) CMS_RS05900 PF01113 Dihydrodipicolinate reductase, N-terminus CMS_RS05900 PF05173 Dihydrodipicolinate reductase, C-terminus CMS_RS05910 PF08338 Domain of unknown function (DUF1731) CMS_RS05910 PF01370 NAD dependent epimerase/dehydratase family CMS_RS05915 PF02511 Thymidylate synthase complementing protein CMS_RS05920 PF00701 Dihydrodipicolinate synthetase family CMS_RS05925 PF17770 Ribonuclease J C-terminal domain CMS_RS05925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CMS_RS05925 PF12706 Beta-lactamase superfamily domain CMS_RS05935 PF00005 ABC transporter CMS_RS05940 PF02687 FtsX-like permease family CMS_RS05940 PF12704 MacB-like periplasmic core domain CMS_RS05940 PF00005 ABC transporter CMS_RS05945 PF17854 FtsK alpha domain CMS_RS05945 PF09397 Ftsk gamma domain CMS_RS05945 PF01580 FtsK/SpoIIIE family CMS_RS05950 PF01066 CDP-alcohol phosphatidyltransferase CMS_RS05955 PF00994 Probable molybdopterin binding domain CMS_RS05955 PF02464 Competence-damaged protein CMS_RS05955 PF18146 Damage-inducible protein CinA KH domain CMS_RS05970 PF00154 recA bacterial DNA recombination protein CMS_RS05975 PF02631 RecX family CMS_RS05980 PF04055 Radical SAM superfamily CMS_RS05980 PF00919 Uncharacterized protein family UPF0004 CMS_RS05990 PF01678 Diaminopimelate epimerase CMS_RS05995 PF08468 Methyltransferase small domain N-terminal CMS_RS05995 PF05175 Methyltransferase small domain CMS_RS06000 PF16360 GTP-binding GTPase Middle Region CMS_RS06000 PF01926 50S ribosome-binding GTPase CMS_RS06000 PF13167 GTP-binding GTPase N-terminal CMS_RS06005 PF00717 Peptidase S24-like CMS_RS06005 PF01726 LexA DNA binding domain CMS_RS06010 PF01476 LysM domain CMS_RS06015 PF00475 Imidazoleglycerol-phosphate dehydratase CMS_RS06020 PF00117 Glutamine amidotransferase class-I CMS_RS06025 PF00977 Histidine biosynthesis protein CMS_RS06040 PF05198 Translation initiation factor IF-3, N-terminal domain CMS_RS06040 PF00707 Translation initiation factor IF-3, C-terminal domain CMS_RS06045 PF01632 Ribosomal protein L35 CMS_RS06050 PF00453 Ribosomal protein L20 CMS_RS06055 PF00588 SpoU rRNA Methylase family CMS_RS06055 PF08032 RNA 2'-O ribose methyltransferase substrate binding CMS_RS06060 PF00005 ABC transporter CMS_RS06065 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMS_RS06070 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS06075 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS06080 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CMS_RS06080 PF01409 tRNA synthetases class II core domain (F) CMS_RS06085 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CMS_RS06085 PF01588 Putative tRNA binding domain CMS_RS06085 PF03147 Ferredoxin-fold anticodon binding domain CMS_RS06085 PF03483 B3/4 domain CMS_RS06085 PF03484 tRNA synthetase B5 domain CMS_RS06090 PF01118 Semialdehyde dehydrogenase, NAD binding domain CMS_RS06090 PF02774 Semialdehyde dehydrogenase, dimerisation domain CMS_RS06095 PF01960 ArgJ family CMS_RS06100 PF00696 Amino acid kinase family CMS_RS06105 PF00202 Aminotransferase class-III CMS_RS06110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CMS_RS06110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CMS_RS06115 PF00764 Arginosuccinate synthase CMS_RS06120 PF14698 Argininosuccinate lyase C-terminal CMS_RS06120 PF00206 Lyase CMS_RS06125 PF02245 Methylpurine-DNA glycosylase (MPG) CMS_RS06140 PF00579 tRNA synthetases class I (W and Y) CMS_RS06165 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS06175 PF01728 FtsJ-like methyltransferase CMS_RS06175 PF01479 S4 domain CMS_RS06180 PF01513 ATP-NAD kinase CMS_RS06185 PF02463 RecF/RecN/SMC N terminal domain CMS_RS06190 PF00117 Glutamine amidotransferase class-I CMS_RS06190 PF06418 CTP synthase N-terminus CMS_RS06195 PF00293 NUDIX domain CMS_RS06200 PF02899 Phage integrase, N-terminal SAM-like domain CMS_RS06200 PF00589 Phage integrase family CMS_RS06205 PF13614 AAA domain CMS_RS06210 PF02616 Segregation and condensation protein ScpA CMS_RS06215 PF04079 Segregation and condensation complex subunit ScpB CMS_RS06220 PF00849 RNA pseudouridylate synthase CMS_RS06220 PF01479 S4 domain CMS_RS06225 PF02153 Prephenate dehydrogenase CMS_RS06230 PF02224 Cytidylate kinase CMS_RS06235 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CMS_RS06235 PF01926 50S ribosome-binding GTPase CMS_RS06250 PF02770 Acyl-CoA dehydrogenase, middle domain CMS_RS06250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CMS_RS06250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CMS_RS06290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMS_RS06295 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS06300 PF12911 N-terminal TM domain of oligopeptide transport permease C CMS_RS06300 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS06310 PF00296 Luciferase-like monooxygenase CMS_RS06335 PF07690 Major Facilitator Superfamily CMS_RS06335 PF00083 Sugar (and other) transporter CMS_RS06340 PF00296 Luciferase-like monooxygenase CMS_RS06370 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS06370 PF00672 HAMP domain CMS_RS06400 PF00293 NUDIX domain CMS_RS06410 PF00561 alpha/beta hydrolase fold CMS_RS06415 PF13193 AMP-binding enzyme C-terminal domain CMS_RS06415 PF00501 AMP-binding enzyme CMS_RS06425 PF07969 Amidohydrolase family CMS_RS06430 PF16197 Ketoacyl-synthetase C-terminal extension CMS_RS06430 PF00109 Beta-ketoacyl synthase, N-terminal domain CMS_RS06430 PF14765 Polyketide synthase dehydratase CMS_RS06430 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS06430 PF00698 Acyl transferase domain CMS_RS06430 PF00550 Phosphopantetheine attachment site CMS_RS06430 PF02801 Beta-ketoacyl synthase, C-terminal domain CMS_RS06430 PF08659 KR domain CMS_RS06430 PF00107 Zinc-binding dehydrogenase CMS_RS06440 PF03853 YjeF-related protein N-terminus CMS_RS06450 PF00296 Luciferase-like monooxygenase CMS_RS06455 PF07690 Major Facilitator Superfamily CMS_RS06480 PF01569 PAP2 superfamily CMS_RS06485 PF01979 Amidohydrolase family CMS_RS06505 PF02625 XdhC and CoxI family CMS_RS06505 PF13478 XdhC Rossmann domain CMS_RS06510 PF13520 Amino acid permease CMS_RS06515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CMS_RS06515 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CMS_RS06540 PF00684 DnaJ central domain CMS_RS06540 PF01556 DnaJ C terminal domain CMS_RS06540 PF00226 DnaJ domain CMS_RS06565 PF01593 Flavin containing amine oxidoreductase CMS_RS06580 PF00107 Zinc-binding dehydrogenase CMS_RS06580 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS06590 PF00293 NUDIX domain CMS_RS06600 PF03009 Glycerophosphoryl diester phosphodiesterase family CMS_RS06605 PF08402 TOBE domain CMS_RS06605 PF00005 ABC transporter CMS_RS06610 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS06640 PF16485 Protealysin propeptide CMS_RS06640 PF02868 Thermolysin metallopeptidase, alpha-helical domain CMS_RS06640 PF01447 Thermolysin metallopeptidase, catalytic domain CMS_RS06645 PF00072 Response regulator receiver domain CMS_RS06650 PF00989 PAS fold CMS_RS06650 PF17203 Single cache domain 3 CMS_RS06650 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CMS_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS06655 PF00375 Sodium:dicarboxylate symporter family CMS_RS06660 PF00498 FHA domain CMS_RS06665 PF00376 MerR family regulatory protein CMS_RS06670 PF13411 MerR HTH family regulatory protein CMS_RS06675 PF13614 AAA domain CMS_RS06680 PF00364 Biotin-requiring enzyme CMS_RS06680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CMS_RS06680 PF00682 HMGL-like CMS_RS06680 PF02436 Conserved carboxylase domain CMS_RS06680 PF02785 Biotin carboxylase C-terminal domain CMS_RS06680 PF00289 Biotin carboxylase, N-terminal domain CMS_RS06685 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS06685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMS_RS06690 PF01327 Polypeptide deformylase CMS_RS06695 PF00501 AMP-binding enzyme CMS_RS06700 PF00480 ROK family CMS_RS06705 PF01553 Acyltransferase CMS_RS06710 PF01474 Class-II DAHP synthetase family CMS_RS06715 PF00665 Integrase core domain CMS_RS06715 PF13936 Helix-turn-helix domain CMS_RS06720 PF00069 Protein kinase domain CMS_RS06720 PF03793 PASTA domain CMS_RS06725 PF01476 LysM domain CMS_RS06725 PF05257 CHAP domain CMS_RS06735 PF00348 Polyprenyl synthetase CMS_RS06745 PF02381 MraZ protein, putative antitoxin-like CMS_RS06750 PF01795 MraW methylase family CMS_RS06760 PF00905 Penicillin binding protein transpeptidase domain CMS_RS06760 PF03717 Penicillin-binding Protein dimerisation domain CMS_RS06765 PF08245 Mur ligase middle domain CMS_RS06765 PF02875 Mur ligase family, glutamate ligase domain CMS_RS06765 PF01225 Mur ligase family, catalytic domain CMS_RS06770 PF01225 Mur ligase family, catalytic domain CMS_RS06770 PF02875 Mur ligase family, glutamate ligase domain CMS_RS06770 PF08245 Mur ligase middle domain CMS_RS06775 PF00953 Glycosyl transferase family 4 CMS_RS06780 PF08245 Mur ligase middle domain CMS_RS06780 PF02875 Mur ligase family, glutamate ligase domain CMS_RS06785 PF01098 Cell cycle protein CMS_RS06790 PF04101 Glycosyltransferase family 28 C-terminal domain CMS_RS06790 PF03033 Glycosyltransferase family 28 N-terminal domain CMS_RS06795 PF01225 Mur ligase family, catalytic domain CMS_RS06795 PF02875 Mur ligase family, glutamate ligase domain CMS_RS06795 PF08245 Mur ligase middle domain CMS_RS06800 PF03799 Cell division protein FtsQ CMS_RS06800 PF08478 POTRA domain, FtsQ-type CMS_RS06805 PF00091 Tubulin/FtsZ family, GTPase domain CMS_RS06805 PF12327 FtsZ family, C-terminal domain CMS_RS06810 PF01168 Alanine racemase, N-terminal domain CMS_RS06815 PF04472 Cell division protein SepF CMS_RS06825 PF05103 DivIVA protein CMS_RS06830 PF00849 RNA pseudouridylate synthase CMS_RS06835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CMS_RS06835 PF14579 Helix-hairpin-helix motif CMS_RS06835 PF02811 PHP domain CMS_RS06835 PF07733 Bacterial DNA polymerase III alpha NTPase domain CMS_RS06845 PF00815 Histidinol dehydrogenase CMS_RS06850 PF03477 ATP cone domain CMS_RS06855 PF01180 Dihydroorotate dehydrogenase CMS_RS06860 PF11241 Protein of unknown function (DUF3043) CMS_RS06865 PF01546 Peptidase family M20/M25/M40 CMS_RS06865 PF07687 Peptidase dimerisation domain CMS_RS06870 PF01521 Iron-sulphur cluster biosynthesis CMS_RS06875 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CMS_RS06880 PF00115 Cytochrome C and Quinol oxidase polypeptide I CMS_RS06885 PF12270 Cytochrome c oxidase subunit IV CMS_RS06895 PF00665 Integrase core domain CMS_RS06915 PF00440 Bacterial regulatory proteins, tetR family CMS_RS06920 PF03176 MMPL family CMS_RS06940 PF01261 Xylose isomerase-like TIM barrel CMS_RS06950 PF00982 Glycosyltransferase family 20 CMS_RS06955 PF02358 Trehalose-phosphatase CMS_RS06960 PF00361 Proton-conducting membrane transporter CMS_RS06960 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CMS_RS06960 PF13244 Domain of unknown function (DUF4040) CMS_RS06960 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CMS_RS06965 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CMS_RS06970 PF00361 Proton-conducting membrane transporter CMS_RS06980 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CMS_RS06990 PF00920 Dehydratase family CMS_RS06995 PF00205 Thiamine pyrophosphate enzyme, central domain CMS_RS06995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMS_RS06995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMS_RS07000 PF01842 ACT domain CMS_RS07000 PF10369 Small subunit of acetolactate synthase CMS_RS07005 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CMS_RS07005 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CMS_RS07025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CMS_RS07025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMS_RS07025 PF01842 ACT domain CMS_RS07035 PF07690 Major Facilitator Superfamily CMS_RS07045 PF00180 Isocitrate/isopropylmalate dehydrogenase CMS_RS07050 PF01063 Amino-transferase class IV CMS_RS07055 PF01557 Fumarylacetoacetate (FAA) hydrolase family CMS_RS07065 PF00749 tRNA synthetases class I (E and Q), catalytic domain CMS_RS07070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS07085 PF00248 Aldo/keto reductase family CMS_RS07090 PF00440 Bacterial regulatory proteins, tetR family CMS_RS07100 PF03741 Integral membrane protein TerC family CMS_RS07125 PF03167 Uracil DNA glycosylase superfamily CMS_RS07150 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CMS_RS07155 PF01380 SIS domain CMS_RS07160 PF00196 Bacterial regulatory proteins, luxR family CMS_RS07165 PF02872 5'-nucleotidase, C-terminal domain CMS_RS07165 PF00746 LPXTG cell wall anchor motif CMS_RS07165 PF00149 Calcineurin-like phosphoesterase CMS_RS07165 PF00565 Staphylococcal nuclease homologue CMS_RS07170 PF01425 Amidase CMS_RS07180 PF04954 Siderophore-interacting protein CMS_RS07180 PF08021 Siderophore-interacting FAD-binding domain CMS_RS07190 PF00106 short chain dehydrogenase CMS_RS07200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMS_RS07200 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS07210 PF00491 Arginase family CMS_RS07220 PF04012 PspA/IM30 family CMS_RS07255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CMS_RS07255 PF01243 Pyridoxamine 5'-phosphate oxidase CMS_RS07260 PF07722 Peptidase C26 CMS_RS07280 PF01522 Polysaccharide deacetylase CMS_RS07285 PF00710 Asparaginase, N-terminal CMS_RS07285 PF17763 Glutaminase/Asparaginase C-terminal domain CMS_RS07290 PF00356 Bacterial regulatory proteins, lacI family CMS_RS07295 PF01841 Transglutaminase-like superfamily CMS_RS07295 PF08379 Bacterial transglutaminase-like N-terminal region CMS_RS07305 PF00750 tRNA synthetases class I (R) CMS_RS07305 PF05746 DALR anticodon binding domain CMS_RS07305 PF03485 Arginyl tRNA synthetase N terminal domain CMS_RS07315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CMS_RS07315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CMS_RS07320 PF03447 Homoserine dehydrogenase, NAD binding domain CMS_RS07320 PF01842 ACT domain CMS_RS07320 PF00742 Homoserine dehydrogenase CMS_RS07325 PF00291 Pyridoxal-phosphate dependent enzyme CMS_RS07330 PF00288 GHMP kinases N terminal domain CMS_RS07340 PF07497 Rho termination factor, RNA-binding domain CMS_RS07340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMS_RS07340 PF07498 Rho termination factor, N-terminal domain CMS_RS07345 PF03462 PCRF domain CMS_RS07345 PF00472 RF-1 domain CMS_RS07350 PF17827 PrmC N-terminal domain CMS_RS07350 PF13649 Methyltransferase domain CMS_RS07360 PF01300 Telomere recombination CMS_RS07365 PF00953 Glycosyl transferase family 4 CMS_RS07380 PF01152 Bacterial-like globin CMS_RS07385 PF00924 Mechanosensitive ion channel CMS_RS07390 PF01433 Peptidase family M1 domain CMS_RS07390 PF11838 ERAP1-like C-terminal domain CMS_RS07395 PF01323 DSBA-like thioredoxin domain CMS_RS07400 PF02502 Ribose/Galactose Isomerase CMS_RS07405 PF06827 Zinc finger found in FPG and IleRS CMS_RS07405 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CMS_RS07405 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CMS_RS07410 PF00210 Ferritin-like domain CMS_RS07430 PF05697 Bacterial trigger factor protein (TF) CMS_RS07430 PF05698 Bacterial trigger factor protein (TF) C-terminus CMS_RS07430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMS_RS07435 PF00574 Clp protease CMS_RS07440 PF00574 Clp protease CMS_RS07445 PF00296 Luciferase-like monooxygenase CMS_RS07450 PF07724 AAA domain (Cdc48 subfamily) CMS_RS07450 PF06689 ClpX C4-type zinc finger CMS_RS07450 PF10431 C-terminal, D2-small domain, of ClpB protein CMS_RS07455 PF01432 Peptidase family M3 CMS_RS07460 PF01209 ubiE/COQ5 methyltransferase family CMS_RS07475 PF00133 tRNA synthetases class I (I, L, M and V) CMS_RS07475 PF08264 Anticodon-binding domain of tRNA CMS_RS07480 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CMS_RS07480 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CMS_RS07490 PF00005 ABC transporter CMS_RS07490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS07495 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS07495 PF12911 N-terminal TM domain of oligopeptide transport permease C CMS_RS07500 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS07505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMS_RS07510 PF16859 Tetracyclin repressor-like, C-terminal domain CMS_RS07510 PF00440 Bacterial regulatory proteins, tetR family CMS_RS07515 PF08241 Methyltransferase domain CMS_RS07520 PF00665 Integrase core domain CMS_RS07555 PF00817 impB/mucB/samB family CMS_RS07555 PF11798 IMS family HHH motif CMS_RS07555 PF11799 impB/mucB/samB family C-terminal domain CMS_RS07565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CMS_RS07565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CMS_RS07565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CMS_RS07570 PF11941 Domain of unknown function (DUF3459) CMS_RS07570 PF00128 Alpha amylase, catalytic domain CMS_RS07575 PF00128 Alpha amylase, catalytic domain CMS_RS07590 PF09819 ABC-type cobalt transport system, permease component CMS_RS07595 PF00005 ABC transporter CMS_RS07625 PF00929 Exonuclease CMS_RS07645 PF02540 NAD synthase CMS_RS07660 PF01625 Peptide methionine sulfoxide reductase CMS_RS07680 PF00005 ABC transporter CMS_RS07680 PF12848 ABC transporter CMS_RS07690 PF02551 Acyl-CoA thioesterase CMS_RS07710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMS_RS07710 PF03129 Anticodon binding domain CMS_RS07710 PF04073 Aminoacyl-tRNA editing domain CMS_RS07725 PF01207 Dihydrouridine synthase (Dus) CMS_RS07730 PF01966 HD domain CMS_RS07730 PF13286 Phosphohydrolase-associated domain CMS_RS07735 PF01807 CHC2 zinc finger CMS_RS07735 PF08275 DNA primase catalytic core, N-terminal domain CMS_RS07735 PF13662 Toprim domain CMS_RS07735 PF10410 DnaB-helicase binding domain of primase CMS_RS07735 PF08278 DNA primase DnaG DnaB-binding CMS_RS07740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMS_RS07745 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS07750 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS07755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS07755 PF00005 ABC transporter CMS_RS07760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS07760 PF00005 ABC transporter CMS_RS07765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CMS_RS07765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMS_RS07765 PF01842 ACT domain CMS_RS07805 PF01032 FecCD transport family CMS_RS07810 PF00005 ABC transporter CMS_RS07835 PF01327 Polypeptide deformylase CMS_RS07845 PF13439 Glycosyltransferase Family 4 CMS_RS07845 PF00534 Glycosyl transferases group 1 CMS_RS07855 PF01757 Acyltransferase family CMS_RS07860 PF01370 NAD dependent epimerase/dehydratase family CMS_RS07865 PF16363 GDP-mannose 4,6 dehydratase CMS_RS07870 PF13579 Glycosyl transferase 4-like domain CMS_RS07870 PF00534 Glycosyl transferases group 1 CMS_RS07880 PF00534 Glycosyl transferases group 1 CMS_RS07880 PF13477 Glycosyl transferase 4-like CMS_RS07910 PF02397 Bacterial sugar transferase CMS_RS07920 PF00313 'Cold-shock' DNA-binding domain CMS_RS07950 PF00109 Beta-ketoacyl synthase, N-terminal domain CMS_RS07950 PF02801 Beta-ketoacyl synthase, C-terminal domain CMS_RS07955 PF00550 Phosphopantetheine attachment site CMS_RS07960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CMS_RS07960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CMS_RS07965 PF00698 Acyl transferase domain CMS_RS07970 PF17853 GGDEF-like domain CMS_RS07970 PF13556 PucR C-terminal helix-turn-helix domain CMS_RS07975 PF17831 Pyruvate dehydrogenase E1 component middle domain CMS_RS07975 PF00456 Transketolase, thiamine diphosphate binding domain CMS_RS07980 PF00578 AhpC/TSA family CMS_RS08000 PF02632 BioY family CMS_RS08005 PF00005 ABC transporter CMS_RS08020 PF01784 NIF3 (NGG1p interacting factor 3) CMS_RS08030 PF00480 ROK family CMS_RS08040 PF02548 Ketopantoate hydroxymethyltransferase CMS_RS08045 PF00120 Glutamine synthetase, catalytic domain CMS_RS08045 PF03951 Glutamine synthetase, beta-Grasp domain CMS_RS08050 PF03710 Glutamate-ammonia ligase adenylyltransferase CMS_RS08050 PF08335 GlnD PII-uridylyltransferase CMS_RS08055 PF00120 Glutamine synthetase, catalytic domain CMS_RS08055 PF03951 Glutamine synthetase, beta-Grasp domain CMS_RS08080 PF02817 e3 binding domain CMS_RS08080 PF00364 Biotin-requiring enzyme CMS_RS08080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CMS_RS08085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMS_RS08085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS08090 PF00883 Cytosol aminopeptidase family, catalytic domain CMS_RS08090 PF02789 Cytosol aminopeptidase family, N-terminal domain CMS_RS08105 PF04545 Sigma-70, region 4 CMS_RS08105 PF04539 Sigma-70 region 3 CMS_RS08105 PF04542 Sigma-70 region 2 CMS_RS08105 PF00140 Sigma-70 factor, region 1.2 CMS_RS08110 PF08245 Mur ligase middle domain CMS_RS08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS08125 PF01751 Toprim domain CMS_RS08125 PF00204 DNA gyrase B CMS_RS08125 PF00986 DNA gyrase B subunit, carboxyl terminus CMS_RS08130 PF03989 DNA gyrase C-terminal domain, beta-propeller CMS_RS08130 PF00521 DNA gyrase/topoisomerase IV, subunit A CMS_RS08160 PF00692 dUTPase CMS_RS08175 PF00330 Aconitase family (aconitate hydratase) CMS_RS08175 PF00694 Aconitase C-terminal domain CMS_RS08180 PF02779 Transketolase, pyrimidine binding domain CMS_RS08180 PF02780 Transketolase, C-terminal domain CMS_RS08180 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CMS_RS08185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CMS_RS08185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CMS_RS08185 PF00378 Enoyl-CoA hydratase/isomerase CMS_RS08190 PF02803 Thiolase, C-terminal domain CMS_RS08190 PF00108 Thiolase, N-terminal domain CMS_RS08210 PF02657 Fe-S metabolism associated domain CMS_RS08215 PF00581 Rhodanese-like domain CMS_RS08225 PF00909 Ammonium Transporter Family CMS_RS08230 PF00248 Aldo/keto reductase family CMS_RS08240 PF05175 Methyltransferase small domain CMS_RS08255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CMS_RS08260 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS08265 PF00571 CBS domain CMS_RS08265 PF00005 ABC transporter CMS_RS08270 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS08275 PF01556 DnaJ C terminal domain CMS_RS08275 PF00684 DnaJ central domain CMS_RS08275 PF00226 DnaJ domain CMS_RS08285 PF01544 CorA-like Mg2+ transporter protein CMS_RS08295 PF07687 Peptidase dimerisation domain CMS_RS08295 PF01546 Peptidase family M20/M25/M40 CMS_RS08300 PF02673 Bacitracin resistance protein BacA CMS_RS08305 PF01406 tRNA synthetases class I (C) catalytic domain CMS_RS08315 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS08320 PF08704 tRNA methyltransferase complex GCD14 subunit CMS_RS08330 PF13280 WYL domain CMS_RS08345 PF00902 Sec-independent protein translocase protein (TatC) CMS_RS08350 PF00270 DEAD/DEAH box helicase CMS_RS08350 PF08148 DSHCT (NUC185) domain CMS_RS08350 PF00271 Helicase conserved C-terminal domain CMS_RS08355 PF00535 Glycosyl transferase family 2 CMS_RS08355 PF00795 Carbon-nitrogen hydrolase CMS_RS08360 PF13397 RNA polymerase-binding protein CMS_RS08380 PF00326 Prolyl oligopeptidase family CMS_RS08385 PF00293 NUDIX domain CMS_RS08390 PF12695 Alpha/beta hydrolase family CMS_RS08395 PF00356 Bacterial regulatory proteins, lacI family CMS_RS08400 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CMS_RS08400 PF04616 Glycosyl hydrolases family 43 CMS_RS08410 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS08430 PF01915 Glycosyl hydrolase family 3 C-terminal domain CMS_RS08430 PF14310 Fibronectin type III-like domain CMS_RS08430 PF00933 Glycosyl hydrolase family 3 N terminal domain CMS_RS08440 PF14310 Fibronectin type III-like domain CMS_RS08440 PF00933 Glycosyl hydrolase family 3 N terminal domain CMS_RS08440 PF01915 Glycosyl hydrolase family 3 C-terminal domain CMS_RS08445 PF00356 Bacterial regulatory proteins, lacI family CMS_RS08450 PF02837 Glycosyl hydrolases family 2, sugar binding domain CMS_RS08450 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CMS_RS08450 PF16355 Domain of unknown function (DUF4982) CMS_RS08450 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CMS_RS08450 PF00703 Glycosyl hydrolases family 2 CMS_RS08460 PF00893 Small Multidrug Resistance protein CMS_RS08465 PF00893 Small Multidrug Resistance protein CMS_RS08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS08475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMS_RS08480 PF00581 Rhodanese-like domain CMS_RS08485 PF02583 Metal-sensitive transcriptional repressor CMS_RS08500 PF05368 NmrA-like family CMS_RS08515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMS_RS08515 PF03129 Anticodon binding domain CMS_RS08520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMS_RS08520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CMS_RS08525 PF01255 Putative undecaprenyl diphosphate synthase CMS_RS08530 PF02565 Recombination protein O C terminal CMS_RS08530 PF11967 Recombination protein O N terminal CMS_RS08540 PF08502 LeuA allosteric (dimerisation) domain CMS_RS08540 PF00682 HMGL-like CMS_RS08545 PF09924 Uncharacterised conserved protein (DUF2156) CMS_RS08555 PF00196 Bacterial regulatory proteins, luxR family CMS_RS08555 PF00072 Response regulator receiver domain CMS_RS08560 PF07730 Histidine kinase CMS_RS08565 PF01926 50S ribosome-binding GTPase CMS_RS08565 PF07650 KH domain CMS_RS08570 PF00571 CBS domain CMS_RS08570 PF03471 Transporter associated domain CMS_RS08570 PF01595 Cyclin M transmembrane N-terminal domain CMS_RS08575 PF02130 Uncharacterized protein family UPF0054 CMS_RS08580 PF02562 PhoH-like protein CMS_RS08585 PF01230 HIT domain CMS_RS08590 PF04452 RNA methyltransferase CMS_RS08595 PF01556 DnaJ C terminal domain CMS_RS08595 PF00226 DnaJ domain CMS_RS08595 PF00684 DnaJ central domain CMS_RS08615 PF04055 Radical SAM superfamily CMS_RS08650 PF00009 Elongation factor Tu GTP binding domain CMS_RS08650 PF06421 GTP-binding protein LepA C-terminus CMS_RS08650 PF00679 Elongation factor G C-terminus CMS_RS08660 PF08281 Sigma-70, region 4 CMS_RS08660 PF04542 Sigma-70 region 2 CMS_RS08665 PF01370 NAD dependent epimerase/dehydratase family CMS_RS08665 PF08338 Domain of unknown function (DUF1731) CMS_RS08670 PF01979 Amidohydrolase family CMS_RS08675 PF00293 NUDIX domain CMS_RS08675 PF13344 Haloacid dehalogenase-like hydrolase CMS_RS08680 PF01649 Ribosomal protein S20 CMS_RS08710 PF00133 tRNA synthetases class I (I, L, M and V) CMS_RS08710 PF13603 Leucyl-tRNA synthetase, Domain 2 CMS_RS08710 PF08264 Anticodon-binding domain of tRNA CMS_RS08710 PF09334 tRNA synthetases class I (M) CMS_RS08715 PF00425 chorismate binding enzyme CMS_RS08715 PF00117 Glutamine amidotransferase class-I CMS_RS08715 PF04715 Anthranilate synthase component I, N terminal region CMS_RS08725 PF00005 ABC transporter CMS_RS08725 PF00664 ABC transporter transmembrane region CMS_RS08730 PF00005 ABC transporter CMS_RS08730 PF00664 ABC transporter transmembrane region CMS_RS08740 PF02322 Cytochrome bd terminal oxidase subunit II CMS_RS08745 PF01654 Cytochrome bd terminal oxidase subunit I CMS_RS08755 PF00583 Acetyltransferase (GNAT) family CMS_RS08755 PF13673 Acetyltransferase (GNAT) domain CMS_RS08770 PF01494 FAD binding domain CMS_RS08780 PF00195 Chalcone and stilbene synthases, N-terminal domain CMS_RS08780 PF02797 Chalcone and stilbene synthases, C-terminal domain CMS_RS08795 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS08800 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS08805 PF00571 CBS domain CMS_RS08805 PF00005 ABC transporter CMS_RS08820 PF00248 Aldo/keto reductase family CMS_RS08835 PF13399 LytR cell envelope-related transcriptional attenuator CMS_RS08835 PF03816 Cell envelope-related transcriptional attenuator domain CMS_RS08840 PF01738 Dienelactone hydrolase family CMS_RS08845 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CMS_RS08845 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CMS_RS08860 PF00561 alpha/beta hydrolase fold CMS_RS08865 PF00561 alpha/beta hydrolase fold CMS_RS08875 PF08659 KR domain CMS_RS08875 PF02801 Beta-ketoacyl synthase, C-terminal domain CMS_RS08875 PF14765 Polyketide synthase dehydratase CMS_RS08875 PF00109 Beta-ketoacyl synthase, N-terminal domain CMS_RS08875 PF00698 Acyl transferase domain CMS_RS08875 PF16197 Ketoacyl-synthetase C-terminal extension CMS_RS08875 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS08875 PF00550 Phosphopantetheine attachment site CMS_RS08880 PF00665 Integrase core domain CMS_RS08885 PF07690 Major Facilitator Superfamily CMS_RS08890 PF12697 Alpha/beta hydrolase family CMS_RS08895 PF12697 Alpha/beta hydrolase family CMS_RS08900 PF00155 Aminotransferase class I and II CMS_RS08910 PF00270 DEAD/DEAH box helicase CMS_RS08910 PF00271 Helicase conserved C-terminal domain CMS_RS08910 PF08148 DSHCT (NUC185) domain CMS_RS08920 PF00106 short chain dehydrogenase CMS_RS08925 PF00381 PTS HPr component phosphorylation site CMS_RS08930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CMS_RS08930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMS_RS08935 PF00294 pfkB family carbohydrate kinase CMS_RS08940 PF00455 DeoR C terminal sensor domain CMS_RS08940 PF08220 DeoR-like helix-turn-helix domain CMS_RS08980 PF01467 Cytidylyltransferase-like CMS_RS08990 PF00171 Aldehyde dehydrogenase family CMS_RS08995 PF00696 Amino acid kinase family CMS_RS09000 PF09269 Domain of unknown function (DUF1967) CMS_RS09000 PF01018 GTP1/OBG CMS_RS09000 PF01926 50S ribosome-binding GTPase CMS_RS09005 PF01016 Ribosomal L27 protein CMS_RS09010 PF00829 Ribosomal prokaryotic L21 protein CMS_RS09020 PF10150 Ribonuclease E/G family CMS_RS09030 PF00334 Nucleoside diphosphate kinase CMS_RS09040 PF08245 Mur ligase middle domain CMS_RS09040 PF02875 Mur ligase family, glutamate ligase domain CMS_RS09045 PF00133 tRNA synthetases class I (I, L, M and V) CMS_RS09045 PF08264 Anticodon-binding domain of tRNA CMS_RS09050 PF00665 Integrase core domain CMS_RS09070 PF11066 Protein of unknown function (DUF2867) CMS_RS09070 PF13460 NAD(P)H-binding CMS_RS09080 PF00480 ROK family CMS_RS09105 PF01687 Riboflavin kinase CMS_RS09105 PF06574 FAD synthetase CMS_RS09120 PF09142 tRNA Pseudouridine synthase II, C terminal CMS_RS09120 PF16198 tRNA pseudouridylate synthase B C-terminal domain CMS_RS09120 PF01509 TruB family pseudouridylate synthase (N terminal domain) CMS_RS09125 PF02558 Ketopantoate reductase PanE/ApbA CMS_RS09125 PF08546 Ketopantoate reductase PanE/ApbA C terminal CMS_RS09135 PF00730 HhH-GPD superfamily base excision DNA repair protein CMS_RS09135 PF00633 Helix-hairpin-helix motif CMS_RS09140 PF02033 Ribosome-binding factor A CMS_RS09145 PF11987 Translation-initiation factor 2 CMS_RS09145 PF04760 Translation initiation factor IF-2, N-terminal region CMS_RS09145 PF00009 Elongation factor Tu GTP binding domain CMS_RS09155 PF13184 NusA-like KH domain CMS_RS09155 PF08529 NusA N-terminal domain CMS_RS09160 PF04073 Aminoacyl-tRNA editing domain CMS_RS09160 PF03129 Anticodon binding domain CMS_RS09160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMS_RS09165 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CMS_RS09170 PF00501 AMP-binding enzyme CMS_RS09175 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CMS_RS09175 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CMS_RS09180 PF04551 GcpE protein CMS_RS09185 PF17820 PDZ domain CMS_RS09185 PF02163 Peptidase family M50 CMS_RS09190 PF03793 PASTA domain CMS_RS09190 PF00069 Protein kinase domain CMS_RS09200 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CMS_RS09200 PF13288 DXP reductoisomerase C-terminal domain CMS_RS09200 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CMS_RS09205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMS_RS09205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CMS_RS09210 PF00665 Integrase core domain CMS_RS09230 PF03880 DbpA RNA binding domain CMS_RS09230 PF00270 DEAD/DEAH box helicase CMS_RS09230 PF00271 Helicase conserved C-terminal domain CMS_RS09235 PF13936 Helix-turn-helix domain CMS_RS09235 PF00665 Integrase core domain CMS_RS09255 PF00561 alpha/beta hydrolase fold CMS_RS09260 PF00135 Carboxylesterase family CMS_RS09265 PF00440 Bacterial regulatory proteins, tetR family CMS_RS09265 PF13977 BetI-type transcriptional repressor, C-terminal CMS_RS09270 PF01451 Low molecular weight phosphotyrosine protein phosphatase CMS_RS09275 PF01022 Bacterial regulatory protein, arsR family CMS_RS09300 PF12823 Domain of unknown function (DUF3817) CMS_RS09300 PF03176 MMPL family CMS_RS09305 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CMS_RS09305 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CMS_RS09335 PF04954 Siderophore-interacting protein CMS_RS09335 PF08021 Siderophore-interacting FAD-binding domain CMS_RS09340 PF03099 Biotin/lipoate A/B protein ligase family CMS_RS09345 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CMS_RS09345 PF04055 Radical SAM superfamily CMS_RS09355 PF03109 ABC1 family CMS_RS09370 PF03699 Uncharacterised protein family (UPF0182) CMS_RS09375 PF05362 Lon protease (S16) C-terminal proteolytic domain CMS_RS09375 PF13180 PDZ domain CMS_RS09390 PF13361 UvrD-like helicase C-terminal domain CMS_RS09390 PF00580 UvrD/REP helicase N-terminal domain CMS_RS09390 PF00570 HRDC domain CMS_RS09395 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CMS_RS09395 PF00293 NUDIX domain CMS_RS09395 PF09297 NADH pyrophosphatase zinc ribbon domain CMS_RS09400 PF01636 Phosphotransferase enzyme family CMS_RS09405 PF00570 HRDC domain CMS_RS09405 PF00580 UvrD/REP helicase N-terminal domain CMS_RS09405 PF13361 UvrD-like helicase C-terminal domain CMS_RS09430 PF00270 DEAD/DEAH box helicase CMS_RS09430 PF00271 Helicase conserved C-terminal domain CMS_RS09450 PF05195 Aminopeptidase P, N-terminal domain CMS_RS09450 PF00557 Metallopeptidase family M24 CMS_RS09460 PF03448 MgtE intracellular N domain CMS_RS09460 PF00571 CBS domain CMS_RS09460 PF01769 Divalent cation transporter CMS_RS09470 PF10609 NUBPL iron-transfer P-loop NTPase CMS_RS09470 PF01883 Iron-sulfur cluster assembly protein CMS_RS09475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMS_RS09475 PF03466 LysR substrate binding domain CMS_RS09480 PF02416 mttA/Hcf106 family CMS_RS09485 PF01596 O-methyltransferase CMS_RS09490 PF00665 Integrase core domain CMS_RS09500 PF01546 Peptidase family M20/M25/M40 CMS_RS09500 PF07687 Peptidase dimerisation domain CMS_RS09505 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CMS_RS09505 PF14602 Hexapeptide repeat of succinyl-transferase CMS_RS09525 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CMS_RS09525 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CMS_RS09530 PF03352 Methyladenine glycosylase CMS_RS09535 PF03883 Peroxide stress protein YaaA CMS_RS09540 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CMS_RS09545 PF02874 ATP synthase alpha/beta family, beta-barrel domain CMS_RS09545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMS_RS09550 PF00231 ATP synthase CMS_RS09555 PF00306 ATP synthase alpha/beta chain, C terminal domain CMS_RS09555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMS_RS09555 PF02874 ATP synthase alpha/beta family, beta-barrel domain CMS_RS09560 PF00213 ATP synthase delta (OSCP) subunit CMS_RS09565 PF00430 ATP synthase B/B' CF(0) CMS_RS09570 PF00137 ATP synthase subunit C CMS_RS09575 PF00119 ATP synthase A chain CMS_RS09585 PF01212 Beta-eliminating lyase CMS_RS09595 PF00311 Phosphoenolpyruvate carboxylase CMS_RS09610 PF17874 MalT-like TPR region CMS_RS09610 PF00196 Bacterial regulatory proteins, luxR family CMS_RS09630 PF04851 Type III restriction enzyme, res subunit CMS_RS09640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CMS_RS09650 PF00768 D-alanyl-D-alanine carboxypeptidase CMS_RS09655 PF00588 SpoU rRNA Methylase family CMS_RS09660 PF02146 Sir2 family CMS_RS09665 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS09680 PF16657 Maltogenic Amylase, C-terminal domain CMS_RS09680 PF00128 Alpha amylase, catalytic domain CMS_RS09690 PF01197 Ribosomal protein L31 CMS_RS09695 PF00005 ABC transporter CMS_RS09700 PF13439 Glycosyltransferase Family 4 CMS_RS09700 PF00534 Glycosyl transferases group 1 CMS_RS09705 PF00483 Nucleotidyl transferase CMS_RS09740 PF12848 ABC transporter CMS_RS09740 PF16326 ABC transporter C-terminal domain CMS_RS09740 PF00005 ABC transporter CMS_RS09745 PF01883 Iron-sulfur cluster assembly protein CMS_RS09750 PF00005 ABC transporter CMS_RS09755 PF00355 Rieske [2Fe-2S] domain CMS_RS09760 PF01458 Uncharacterized protein family (UPF0051) CMS_RS09765 PF01458 Uncharacterized protein family (UPF0051) CMS_RS09770 PF02628 Cytochrome oxidase assembly protein CMS_RS09775 PF01040 UbiA prenyltransferase family CMS_RS09780 PF02779 Transketolase, pyrimidine binding domain CMS_RS09780 PF00456 Transketolase, thiamine diphosphate binding domain CMS_RS09780 PF02780 Transketolase, C-terminal domain CMS_RS09785 PF00923 Transaldolase/Fructose-6-phosphate aldolase CMS_RS09790 PF00342 Phosphoglucose isomerase CMS_RS09795 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CMS_RS09795 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CMS_RS09805 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CMS_RS09815 PF03840 Preprotein translocase SecG subunit CMS_RS09820 PF00121 Triosephosphate isomerase CMS_RS09825 PF00162 Phosphoglycerate kinase CMS_RS09830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CMS_RS09830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CMS_RS09835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CMS_RS09835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CMS_RS09840 PF10298 WhiA N-terminal LAGLIDADG-like domain CMS_RS09840 PF14527 WhiA LAGLIDADG-like domain CMS_RS09840 PF02650 WhiA C-terminal HTH domain CMS_RS09845 PF03668 P-loop ATPase protein family CMS_RS09850 PF01541 GIY-YIG catalytic domain CMS_RS09850 PF02151 UvrB/uvrC motif CMS_RS09850 PF08459 UvrC Helix-hairpin-helix N-terminal CMS_RS09855 PF00005 ABC transporter CMS_RS09855 PF17755 UvrA DNA-binding domain CMS_RS09855 PF17760 UvrA interaction domain CMS_RS09860 PF00271 Helicase conserved C-terminal domain CMS_RS09860 PF04851 Type III restriction enzyme, res subunit CMS_RS09860 PF02151 UvrB/uvrC motif CMS_RS09860 PF12344 Ultra-violet resistance protein B CMS_RS09860 PF17757 UvrB interaction domain CMS_RS09865 PF01121 Dephospho-CoA kinase CMS_RS09870 PF00575 S1 RNA binding domain CMS_RS09880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMS_RS09885 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CMS_RS09885 PF01367 5'-3' exonuclease, C-terminal SAM fold CMS_RS09885 PF00476 DNA polymerase family A CMS_RS09890 PF03061 Thioesterase superfamily CMS_RS09895 PF00665 Integrase core domain CMS_RS09905 PF03861 ANTAR domain CMS_RS09905 PF00072 Response regulator receiver domain CMS_RS09915 PF00224 Pyruvate kinase, barrel domain CMS_RS09915 PF02887 Pyruvate kinase, alpha/beta domain CMS_RS09920 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS09920 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CMS_RS09925 PF01493 GXGXG motif CMS_RS09925 PF01645 Conserved region in glutamate synthase CMS_RS09925 PF04898 Glutamate synthase central domain CMS_RS09925 PF00310 Glutamine amidotransferases class-II CMS_RS09930 PF01790 Prolipoprotein diacylglyceryl transferase CMS_RS09935 PF00290 Tryptophan synthase alpha chain CMS_RS09940 PF00291 Pyridoxal-phosphate dependent enzyme CMS_RS09945 PF00218 Indole-3-glycerol phosphate synthase CMS_RS09960 PF04715 Anthranilate synthase component I, N terminal region CMS_RS09960 PF00425 chorismate binding enzyme CMS_RS09965 PF01502 Phosphoribosyl-AMP cyclohydrolase CMS_RS09970 PF00977 Histidine biosynthesis protein CMS_RS09975 PF08029 HisG, C-terminal domain CMS_RS09975 PF01634 ATP phosphoribosyltransferase CMS_RS09980 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CMS_RS09990 PF00834 Ribulose-phosphate 3 epimerase family CMS_RS09995 PF01029 NusB family CMS_RS09995 PF01189 16S rRNA methyltransferase RsmB/F CMS_RS10000 PF02911 Formyl transferase, C-terminal domain CMS_RS10000 PF00551 Formyl transferase CMS_RS10005 PF17764 3′ DNA-binding domain (3′BD) CMS_RS10010 PF02773 S-adenosylmethionine synthetase, C-terminal domain CMS_RS10010 PF00438 S-adenosylmethionine synthetase, N-terminal domain CMS_RS10010 PF02772 S-adenosylmethionine synthetase, central domain CMS_RS10015 PF02441 Flavoprotein CMS_RS10015 PF04127 DNA / pantothenate metabolism flavoprotein CMS_RS10020 PF01192 RNA polymerase Rpb6 CMS_RS10025 PF00625 Guanylate kinase CMS_RS10030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CMS_RS10035 PF02142 MGS-like domain CMS_RS10035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CMS_RS10035 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CMS_RS10040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CMS_RS10040 PF00117 Glutamine amidotransferase class-I CMS_RS10050 PF01979 Amidohydrolase family CMS_RS10055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CMS_RS10055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CMS_RS10060 PF00156 Phosphoribosyl transferase domain CMS_RS10065 PF13193 AMP-binding enzyme C-terminal domain CMS_RS10065 PF00501 AMP-binding enzyme CMS_RS10065 PF16177 Acetyl-coenzyme A synthetase N-terminus CMS_RS10070 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS10080 PF00005 ABC transporter CMS_RS10090 PF01029 NusB family CMS_RS10095 PF08207 Elongation factor P (EF-P) KOW-like domain CMS_RS10095 PF01132 Elongation factor P (EF-P) OB domain CMS_RS10095 PF09285 Elongation factor P, C-terminal CMS_RS10100 PF01220 Dehydroquinase class II CMS_RS10110 PF02769 AIR synthase related protein, C-terminal domain CMS_RS10110 PF00586 AIR synthase related protein, N-terminal domain CMS_RS10120 PF00535 Glycosyl transferase family 2 CMS_RS10125 PF01820 D-ala D-ala ligase N-terminus CMS_RS10125 PF07478 D-ala D-ala ligase C-terminus CMS_RS10130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CMS_RS10130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CMS_RS10140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CMS_RS10145 PF00694 Aconitase C-terminal domain CMS_RS10150 PF00330 Aconitase family (aconitate hydratase) CMS_RS10160 PF03741 Integral membrane protein TerC family CMS_RS10170 PF00106 short chain dehydrogenase CMS_RS10175 PF01053 Cys/Met metabolism PLP-dependent enzyme CMS_RS10180 PF00561 alpha/beta hydrolase fold CMS_RS10205 PF00072 Response regulator receiver domain CMS_RS10205 PF00196 Bacterial regulatory proteins, luxR family CMS_RS10210 PF07690 Major Facilitator Superfamily CMS_RS10215 PF01910 Thiamine-binding protein CMS_RS10220 PF04264 YceI-like domain CMS_RS10225 PF01256 Carbohydrate kinase CMS_RS10225 PF03853 YjeF-related protein N-terminus CMS_RS10230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CMS_RS10235 PF01595 Cyclin M transmembrane N-terminal domain CMS_RS10235 PF00571 CBS domain CMS_RS10240 PF01595 Cyclin M transmembrane N-terminal domain CMS_RS10240 PF00571 CBS domain CMS_RS10240 PF03471 Transporter associated domain CMS_RS10250 PF16078 2-oxoglutarate dehydrogenase N-terminus CMS_RS10250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CMS_RS10250 PF16870 2-oxoglutarate dehydrogenase C-terminal CMS_RS10250 PF02779 Transketolase, pyrimidine binding domain CMS_RS10250 PF00676 Dehydrogenase E1 component CMS_RS10265 PF04542 Sigma-70 region 2 CMS_RS10265 PF08281 Sigma-70, region 4 CMS_RS10270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CMS_RS10275 PF03193 RsgA GTPase CMS_RS10280 PF00459 Inositol monophosphatase family CMS_RS10295 PF00005 ABC transporter CMS_RS10295 PF03459 TOBE domain CMS_RS10305 PF01668 SmpB protein CMS_RS10310 PF02687 FtsX-like permease family CMS_RS10310 PF18075 FtsX extracellular domain CMS_RS10315 PF00005 ABC transporter CMS_RS10320 PF03462 PCRF domain CMS_RS10320 PF00472 RF-1 domain CMS_RS10360 PF00437 Type II/IV secretion system protein CMS_RS10365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CMS_RS10365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CMS_RS10375 PF00291 Pyridoxal-phosphate dependent enzyme CMS_RS10380 PF09335 SNARE associated Golgi protein CMS_RS10385 PF01545 Cation efflux family CMS_RS10390 PF01725 Ham1 family CMS_RS10395 PF03725 3' exoribonuclease family, domain 2 CMS_RS10395 PF01138 3' exoribonuclease family, domain 1 CMS_RS10400 PF01177 Asp/Glu/Hydantoin racemase CMS_RS10405 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CMS_RS10410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CMS_RS10410 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CMS_RS10425 PF13732 Domain of unknown function (DUF4162) CMS_RS10425 PF00005 ABC transporter CMS_RS10430 PF12804 MobA-like NTP transferase domain CMS_RS10430 PF00132 Bacterial transferase hexapeptide (six repeats) CMS_RS10440 PF00005 ABC transporter CMS_RS10450 PF01381 Helix-turn-helix CMS_RS10480 PF13180 PDZ domain CMS_RS10495 PF00155 Aminotransferase class I and II CMS_RS10500 PF00005 ABC transporter CMS_RS10515 PF00196 Bacterial regulatory proteins, luxR family CMS_RS10515 PF00072 Response regulator receiver domain CMS_RS10520 PF02617 ATP-dependent Clp protease adaptor protein ClpS CMS_RS10540 PF04228 Putative neutral zinc metallopeptidase CMS_RS10555 PF00072 Response regulator receiver domain CMS_RS10555 PF00486 Transcriptional regulatory protein, C terminal CMS_RS10560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS10560 PF00672 HAMP domain CMS_RS10560 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS10600 PF00709 Adenylosuccinate synthetase CMS_RS10610 PF12320 Type 5 capsule protein repressor C-terminal domain CMS_RS10610 PF00149 Calcineurin-like phosphoesterase CMS_RS10615 PF13476 AAA domain CMS_RS10685 PF00037 4Fe-4S binding domain CMS_RS10690 PF09278 MerR, DNA binding CMS_RS10690 PF00376 MerR family regulatory protein CMS_RS10700 PF00271 Helicase conserved C-terminal domain CMS_RS10700 PF00270 DEAD/DEAH box helicase CMS_RS10735 PF03466 LysR substrate binding domain CMS_RS10735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMS_RS10750 PF03600 Citrate transporter CMS_RS10760 PF00072 Response regulator receiver domain CMS_RS10770 PF00293 NUDIX domain CMS_RS10780 PF00561 alpha/beta hydrolase fold CMS_RS10780 PF00364 Biotin-requiring enzyme CMS_RS10815 PF01047 MarR family CMS_RS10820 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS10830 PF01939 Endonuclease NucS CMS_RS10840 PF00892 EamA-like transporter family CMS_RS10860 PF00665 Integrase core domain CMS_RS10870 PF00202 Aminotransferase class-III CMS_RS10880 PF01580 FtsK/SpoIIIE family CMS_RS10895 PF07726 ATPase family associated with various cellular activities (AAA) CMS_RS10895 PF17863 AAA lid domain CMS_RS10910 PF00285 Citrate synthase, C-terminal domain CMS_RS10915 PF00155 Aminotransferase class I and II CMS_RS10920 PF00037 4Fe-4S binding domain CMS_RS10925 PF02585 GlcNAc-PI de-N-acetylase CMS_RS10930 PF03239 Iron permease FTR1 family CMS_RS10935 PF13473 Cupredoxin-like domain CMS_RS10935 PF09375 Imelysin CMS_RS10940 PF10518 TAT (twin-arginine translocation) pathway signal sequence CMS_RS10940 PF04261 Dyp-type peroxidase family CMS_RS10950 PF14492 Elongation Factor G, domain II CMS_RS10950 PF00679 Elongation factor G C-terminus CMS_RS10950 PF03144 Elongation factor Tu domain 2 CMS_RS10950 PF00009 Elongation factor Tu GTP binding domain CMS_RS10955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMS_RS10960 PF00005 ABC transporter CMS_RS10960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS10975 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS10995 PF00474 Sodium:solute symporter family CMS_RS11000 PF02347 Glycine cleavage system P-protein CMS_RS11005 PF01597 Glycine cleavage H-protein CMS_RS11010 PF01571 Aminomethyltransferase folate-binding domain CMS_RS11010 PF08669 Glycine cleavage T-protein C-terminal barrel domain CMS_RS11030 PF02567 Phenazine biosynthesis-like protein CMS_RS11040 PF01594 AI-2E family transporter CMS_RS11060 PF03211 Pectate lyase CMS_RS11065 PF06628 Catalase-related immune-responsive CMS_RS11065 PF00199 Catalase CMS_RS11070 PF01475 Ferric uptake regulator family CMS_RS11075 PF00248 Aldo/keto reductase family CMS_RS11110 PF00795 Carbon-nitrogen hydrolase CMS_RS11115 PF07729 FCD domain CMS_RS11115 PF00392 Bacterial regulatory proteins, gntR family CMS_RS11120 PF00083 Sugar (and other) transporter CMS_RS11130 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CMS_RS11140 PF00586 AIR synthase related protein, N-terminal domain CMS_RS11140 PF02769 AIR synthase related protein, C-terminal domain CMS_RS11140 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CMS_RS11165 PF01757 Acyltransferase family CMS_RS11170 PF13614 AAA domain CMS_RS11175 PF01451 Low molecular weight phosphotyrosine protein phosphatase CMS_RS11180 PF02397 Bacterial sugar transferase CMS_RS11185 PF00534 Glycosyl transferases group 1 CMS_RS11185 PF13439 Glycosyltransferase Family 4 CMS_RS11240 PF07690 Major Facilitator Superfamily CMS_RS11245 PF00156 Phosphoribosyl transferase domain CMS_RS11250 PF00834 Ribulose-phosphate 3 epimerase family CMS_RS11255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CMS_RS11255 PF14572 Phosphoribosyl synthetase-associated domain CMS_RS11275 PF01817 Chorismate mutase type II CMS_RS11275 PF02153 Prephenate dehydrogenase CMS_RS11280 PF02566 OsmC-like protein CMS_RS11285 PF00072 Response regulator receiver domain CMS_RS11285 PF00196 Bacterial regulatory proteins, luxR family CMS_RS11295 PF00144 Beta-lactamase CMS_RS11325 PF04234 CopC domain CMS_RS11330 PF00266 Aminotransferase class-V CMS_RS11335 PF01592 NifU-like N terminal domain CMS_RS11370 PF13520 Amino acid permease CMS_RS11385 PF00665 Integrase core domain CMS_RS11395 PF00288 GHMP kinases N terminal domain CMS_RS11395 PF08544 GHMP kinases C terminal CMS_RS11400 PF00398 Ribosomal RNA adenine dimethylase CMS_RS11405 PF01026 TatD related DNase CMS_RS11410 PF08264 Anticodon-binding domain of tRNA CMS_RS11410 PF09334 tRNA synthetases class I (M) CMS_RS11425 PF00285 Citrate synthase, C-terminal domain CMS_RS11430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMS_RS11430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS11450 PF00149 Calcineurin-like phosphoesterase CMS_RS11460 PF03972 MmgE/PrpD family CMS_RS11500 PF00665 Integrase core domain CMS_RS11505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CMS_RS11535 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase CMS_RS11535 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CMS_RS11540 PF03601 Conserved hypothetical protein 698 CMS_RS11550 PF08279 HTH domain CMS_RS11550 PF13280 WYL domain CMS_RS11575 PF04226 Transglycosylase associated protein CMS_RS11585 PF03313 Serine dehydratase alpha chain CMS_RS11585 PF03315 Serine dehydratase beta chain CMS_RS11610 PF01370 NAD dependent epimerase/dehydratase family CMS_RS11615 PF01547 Bacterial extracellular solute-binding protein CMS_RS11620 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS11625 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS11630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CMS_RS11630 PF13378 Enolase C-terminal domain-like CMS_RS11635 PF00701 Dihydrodipicolinate synthetase family CMS_RS11640 PF00665 Integrase core domain CMS_RS11645 PF03190 Protein of unknown function, DUF255 CMS_RS11650 PF01544 CorA-like Mg2+ transporter protein CMS_RS11660 PF13193 AMP-binding enzyme C-terminal domain CMS_RS11660 PF00501 AMP-binding enzyme CMS_RS11665 PF00271 Helicase conserved C-terminal domain CMS_RS11665 PF00270 DEAD/DEAH box helicase CMS_RS11665 PF11898 Domain of unknown function (DUF3418) CMS_RS11665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CMS_RS11665 PF04408 Helicase associated domain (HA2) CMS_RS11675 PF07729 FCD domain CMS_RS11675 PF00392 Bacterial regulatory proteins, gntR family CMS_RS11680 PF02785 Biotin carboxylase C-terminal domain CMS_RS11680 PF00289 Biotin carboxylase, N-terminal domain CMS_RS11680 PF00364 Biotin-requiring enzyme CMS_RS11680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CMS_RS11680 PF18140 Propionyl-coenzyme A carboxylase BT domain CMS_RS11685 PF01425 Amidase CMS_RS11690 PF03668 P-loop ATPase protein family CMS_RS11695 PF00581 Rhodanese-like domain CMS_RS11705 PF00268 Ribonucleotide reductase, small chain CMS_RS11710 PF00317 Ribonucleotide reductase, all-alpha domain CMS_RS11710 PF02867 Ribonucleotide reductase, barrel domain CMS_RS11710 PF03477 ATP cone domain CMS_RS11725 PF00248 Aldo/keto reductase family CMS_RS11735 PF13180 PDZ domain CMS_RS11740 PF00665 Integrase core domain CMS_RS11740 PF13936 Helix-turn-helix domain CMS_RS11745 PF07729 FCD domain CMS_RS11745 PF00392 Bacterial regulatory proteins, gntR family CMS_RS11750 PF00121 Triosephosphate isomerase CMS_RS11755 PF02502 Ribose/Galactose Isomerase CMS_RS11760 PF02734 DAK2 domain CMS_RS11760 PF02733 Dak1 domain CMS_RS11765 PF07702 UTRA domain CMS_RS11765 PF00392 Bacterial regulatory proteins, gntR family CMS_RS11770 PF00005 ABC transporter CMS_RS11775 PF02653 Branched-chain amino acid transport system / permease component CMS_RS11785 PF01943 Polysaccharide biosynthesis protein CMS_RS11805 PF03441 FAD binding domain of DNA photolyase CMS_RS11805 PF00875 DNA photolyase CMS_RS11815 PF00156 Phosphoribosyl transferase domain CMS_RS11835 PF13614 AAA domain CMS_RS11855 PF00324 Amino acid permease CMS_RS11860 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS11860 PF13456 Reverse transcriptase-like CMS_RS11875 PF06071 Protein of unknown function (DUF933) CMS_RS11875 PF01926 50S ribosome-binding GTPase CMS_RS11885 PF02646 RmuC family CMS_RS11890 PF01116 Fructose-bisphosphate aldolase class-II CMS_RS11900 PF02401 LytB protein CMS_RS11905 PF13742 OB-fold nucleic acid binding domain CMS_RS11905 PF02601 Exonuclease VII, large subunit CMS_RS11910 PF02609 Exonuclease VII small subunit CMS_RS11920 PF00484 Carbonic anhydrase CMS_RS11925 PF10415 Fumarase C C-terminus CMS_RS11925 PF00206 Lyase CMS_RS11935 PF13638 PIN domain CMS_RS11935 PF02562 PhoH-like protein CMS_RS11940 PF01255 Putative undecaprenyl diphosphate synthase CMS_RS11950 PF13416 Bacterial extracellular solute-binding protein CMS_RS11955 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS11960 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS11970 PF02585 GlcNAc-PI de-N-acetylase CMS_RS11980 PF03449 Transcription elongation factor, N-terminal CMS_RS11980 PF01272 Transcription elongation factor, GreA/GreB, C-term CMS_RS11985 PF13291 ACT domain CMS_RS11985 PF00291 Pyridoxal-phosphate dependent enzyme CMS_RS11990 PF01594 AI-2E family transporter CMS_RS12005 PF04011 LemA family CMS_RS12020 PF13520 Amino acid permease CMS_RS12040 PF01740 STAS domain CMS_RS12045 PF03552 Cellulose synthase CMS_RS12045 PF07238 PilZ domain CMS_RS12045 PF00535 Glycosyl transferase family 2 CMS_RS12075 PF13274 Protein of unknown function (DUF4065) CMS_RS12090 PF00082 Subtilase family CMS_RS12105 PF03952 Enolase, N-terminal domain CMS_RS12105 PF00113 Enolase, C-terminal TIM barrel domain CMS_RS12110 PF13393 Histidyl-tRNA synthetase CMS_RS12120 PF03819 MazG nucleotide pyrophosphohydrolase domain CMS_RS12125 PF06965 Na+/H+ antiporter 1 CMS_RS12135 PF02559 CarD-like/TRCF domain CMS_RS12135 PF00271 Helicase conserved C-terminal domain CMS_RS12135 PF03461 TRCF domain CMS_RS12135 PF00270 DEAD/DEAH box helicase CMS_RS12135 PF17757 UvrB interaction domain CMS_RS12140 PF01195 Peptidyl-tRNA hydrolase CMS_RS12145 PF01386 Ribosomal L25p family CMS_RS12145 PF14693 Ribosomal protein TL5, C-terminal domain CMS_RS12155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CMS_RS12155 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CMS_RS12175 PF14572 Phosphoribosyl synthetase-associated domain CMS_RS12175 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CMS_RS12180 PF00132 Bacterial transferase hexapeptide (six repeats) CMS_RS12180 PF12804 MobA-like NTP transferase domain CMS_RS12200 PF00296 Luciferase-like monooxygenase CMS_RS12205 PF01810 LysE type translocator CMS_RS12215 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS12220 PF00005 ABC transporter CMS_RS12220 PF09383 NIL domain CMS_RS12225 PF03180 NLPA lipoprotein CMS_RS12240 PF00005 ABC transporter CMS_RS12240 PF12848 ABC transporter CMS_RS12240 PF16326 ABC transporter C-terminal domain CMS_RS12255 PF00005 ABC transporter CMS_RS12255 PF12704 MacB-like periplasmic core domain CMS_RS12255 PF02687 FtsX-like permease family CMS_RS12270 PF02391 MoaE protein CMS_RS12275 PF01967 MoaC family CMS_RS12275 PF00994 Probable molybdopterin binding domain CMS_RS12280 PF01967 MoaC family CMS_RS12285 PF03454 MoeA C-terminal region (domain IV) CMS_RS12285 PF03453 MoeA N-terminal region (domain I and II) CMS_RS12285 PF00994 Probable molybdopterin binding domain CMS_RS12310 PF01048 Phosphorylase superfamily CMS_RS12315 PF16363 GDP-mannose 4,6 dehydratase CMS_RS12355 PF03773 Predicted permease CMS_RS12370 PF01494 FAD binding domain CMS_RS12405 PF00989 PAS fold CMS_RS12405 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS12405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS12405 PF16736 Single Cache-like CMS_RS12410 PF00072 Response regulator receiver domain CMS_RS12410 PF00486 Transcriptional regulatory protein, C terminal CMS_RS12415 PF00535 Glycosyl transferase family 2 CMS_RS12445 PF08402 TOBE domain CMS_RS12445 PF00005 ABC transporter CMS_RS12450 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS12465 PF04055 Radical SAM superfamily CMS_RS12465 PF06463 Molybdenum Cofactor Synthesis C CMS_RS12490 PF00356 Bacterial regulatory proteins, lacI family CMS_RS12495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMS_RS12495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CMS_RS12500 PF01047 MarR family CMS_RS12520 PF00581 Rhodanese-like domain CMS_RS12520 PF00899 ThiF family CMS_RS12530 PF00561 alpha/beta hydrolase fold CMS_RS12545 PF00665 Integrase core domain CMS_RS12555 PF00486 Transcriptional regulatory protein, C terminal CMS_RS12565 PF14437 MafB19-like deaminase CMS_RS12580 PF03807 NADP oxidoreductase coenzyme F420-dependent CMS_RS12580 PF14748 Pyrroline-5-carboxylate reductase dimerisation CMS_RS12585 PF02254 TrkA-N domain CMS_RS12585 PF02080 TrkA-C domain CMS_RS12590 PF02386 Cation transport protein CMS_RS12595 PF01022 Bacterial regulatory protein, arsR family CMS_RS12600 PF12728 Helix-turn-helix domain CMS_RS12620 PF00005 ABC transporter CMS_RS12640 PF03816 Cell envelope-related transcriptional attenuator domain CMS_RS12640 PF13399 LytR cell envelope-related transcriptional attenuator CMS_RS12645 PF00152 tRNA synthetases class II (D, K and N) CMS_RS12645 PF01336 OB-fold nucleic acid binding domain CMS_RS12650 PF03746 LamB/YcsF family CMS_RS12655 PF02682 Carboxyltransferase domain, subdomain C and D CMS_RS12660 PF02626 Carboxyltransferase domain, subdomain A and B CMS_RS12670 PF17755 UvrA DNA-binding domain CMS_RS12680 PF08532 Beta-galactosidase trimerisation domain CMS_RS12680 PF08533 Beta-galactosidase C-terminal domain CMS_RS12680 PF02449 Beta-galactosidase CMS_RS12690 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS12695 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS12700 PF00356 Bacterial regulatory proteins, lacI family CMS_RS12705 PF04545 Sigma-70, region 4 CMS_RS12705 PF04539 Sigma-70 region 3 CMS_RS12705 PF04542 Sigma-70 region 2 CMS_RS12705 PF00140 Sigma-70 factor, region 1.2 CMS_RS12710 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS12715 PF08534 Redoxin CMS_RS12720 PF02683 Cytochrome C biogenesis protein transmembrane region CMS_RS12730 PF01578 Cytochrome C assembly protein CMS_RS12735 PF13378 Enolase C-terminal domain-like CMS_RS12735 PF18374 Enolase N-terminal domain-like CMS_RS12740 PF00378 Enoyl-CoA hydratase/isomerase CMS_RS12745 PF00501 AMP-binding enzyme CMS_RS12745 PF13193 AMP-binding enzyme C-terminal domain CMS_RS12765 PF00664 ABC transporter transmembrane region CMS_RS12765 PF00005 ABC transporter CMS_RS12770 PF00664 ABC transporter transmembrane region CMS_RS12770 PF00005 ABC transporter CMS_RS12795 PF01808 AICARFT/IMPCHase bienzyme CMS_RS12795 PF02142 MGS-like domain CMS_RS12800 PF00551 Formyl transferase CMS_RS12810 PF00549 CoA-ligase CMS_RS12810 PF02629 CoA binding domain CMS_RS12815 PF08442 ATP-grasp domain CMS_RS12815 PF00549 CoA-ligase CMS_RS12820 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) CMS_RS12835 PF13361 UvrD-like helicase C-terminal domain CMS_RS12835 PF00580 UvrD/REP helicase N-terminal domain CMS_RS12855 PF01040 UbiA prenyltransferase family CMS_RS12860 PF01040 UbiA prenyltransferase family CMS_RS12870 PF01593 Flavin containing amine oxidoreductase CMS_RS12875 PF00348 Polyprenyl synthetase CMS_RS12880 PF00293 NUDIX domain CMS_RS12885 PF00665 Integrase core domain CMS_RS12885 PF13936 Helix-turn-helix domain CMS_RS12890 PF00128 Alpha amylase, catalytic domain CMS_RS12895 PF00248 Aldo/keto reductase family CMS_RS12920 PF13452 N-terminal half of MaoC dehydratase CMS_RS12930 PF01565 FAD binding domain CMS_RS12930 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CMS_RS12935 PF00155 Aminotransferase class I and II CMS_RS12945 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CMS_RS12950 PF02357 Transcription termination factor nusG CMS_RS12955 PF00298 Ribosomal protein L11, RNA binding domain CMS_RS12955 PF03946 Ribosomal protein L11, N-terminal domain CMS_RS12960 PF00687 Ribosomal protein L1p/L10e family CMS_RS12965 PF00583 Acetyltransferase (GNAT) family CMS_RS12985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMS_RS13025 PF00072 Response regulator receiver domain CMS_RS13025 PF00196 Bacterial regulatory proteins, luxR family CMS_RS13035 PF02661 Fic/DOC family CMS_RS13055 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CMS_RS13080 PF01047 MarR family CMS_RS13100 PF02463 RecF/RecN/SMC N terminal domain CMS_RS13100 PF06470 SMC proteins Flexible Hinge Domain CMS_RS13115 PF13580 SIS domain CMS_RS13120 PF00294 pfkB family carbohydrate kinase CMS_RS13120 PF01467 Cytidylyltransferase-like CMS_RS13155 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CMS_RS13160 PF00356 Bacterial regulatory proteins, lacI family CMS_RS13165 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS13170 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS13180 PF01301 Glycosyl hydrolases family 35 CMS_RS13190 PF00171 Aldehyde dehydrogenase family CMS_RS13320 PF01740 STAS domain CMS_RS13340 PF00881 Nitroreductase family CMS_RS13365 PF11999 Protein of unknown function (DUF3494) CMS_RS13365 PF02368 Bacterial Ig-like domain (group 2) CMS_RS13370 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS13375 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS13390 PF00893 Small Multidrug Resistance protein CMS_RS13400 PF00934 PE family CMS_RS13400 PF07859 alpha/beta hydrolase fold CMS_RS13405 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CMS_RS13410 PF01594 AI-2E family transporter CMS_RS13425 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS13430 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS13435 PF12849 PBP superfamily domain CMS_RS13440 PF00293 NUDIX domain CMS_RS13440 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS13445 PF13090 Polyphosphate kinase C-terminal domain 2 CMS_RS13445 PF02503 Polyphosphate kinase middle domain CMS_RS13445 PF17941 Polyphosphate kinase C-terminal domain 1 CMS_RS13445 PF13089 Polyphosphate kinase N-terminal domain CMS_RS13450 PF00583 Acetyltransferase (GNAT) family CMS_RS13455 PF00486 Transcriptional regulatory protein, C terminal CMS_RS13470 PF08768 Domain of unknown function (DUF1794) CMS_RS13475 PF01571 Aminomethyltransferase folate-binding domain CMS_RS13495 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS13500 PF01895 PhoU domain CMS_RS13505 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS13505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS13510 PF00072 Response regulator receiver domain CMS_RS13510 PF00486 Transcriptional regulatory protein, C terminal CMS_RS13520 PF02559 CarD-like/TRCF domain CMS_RS13525 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CMS_RS13525 PF02542 YgbB family CMS_RS13530 PF09190 DALR domain CMS_RS13530 PF01406 tRNA synthetases class I (C) catalytic domain CMS_RS13535 PF00588 SpoU rRNA Methylase family CMS_RS13535 PF08032 RNA 2'-O ribose methyltransferase substrate binding CMS_RS13545 PF17912 MalK OB fold domain CMS_RS13545 PF00005 ABC transporter CMS_RS13565 PF01641 SelR domain CMS_RS13580 PF00313 'Cold-shock' DNA-binding domain CMS_RS13585 PF00118 TCP-1/cpn60 chaperonin family CMS_RS13595 PF00672 HAMP domain CMS_RS13595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMS_RS13595 PF00512 His Kinase A (phospho-acceptor) domain CMS_RS13600 PF00072 Response regulator receiver domain CMS_RS13600 PF00486 Transcriptional regulatory protein, C terminal CMS_RS13605 PF04851 Type III restriction enzyme, res subunit CMS_RS13605 PF00271 Helicase conserved C-terminal domain CMS_RS13620 PF00313 'Cold-shock' DNA-binding domain CMS_RS13625 PF11228 Protein of unknown function (DUF3027) CMS_RS13630 PF00266 Aminotransferase class-V CMS_RS13635 PF01325 Iron dependent repressor, N-terminal DNA binding domain CMS_RS13635 PF02742 Iron dependent repressor, metal binding and dimerisation domain CMS_RS13635 PF18357 Diphteria toxin repressor SH3 domain CMS_RS13640 PF00877 NlpC/P60 family CMS_RS13650 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CMS_RS13650 PF00326 Prolyl oligopeptidase family CMS_RS13665 PF11774 Lsr2 CMS_RS13830 PF00012 Hsp70 protein CMS_RS13835 PF01025 GrpE CMS_RS13840 PF00226 DnaJ domain CMS_RS13840 PF01556 DnaJ C terminal domain CMS_RS13840 PF00684 DnaJ central domain CMS_RS13845 PF13411 MerR HTH family regulatory protein CMS_RS13850 PF05175 Methyltransferase small domain CMS_RS13865 PF11838 ERAP1-like C-terminal domain CMS_RS13865 PF01433 Peptidase family M1 domain CMS_RS13890 PF00171 Aldehyde dehydrogenase family CMS_RS13915 PF02435 Levansucrase/Invertase CMS_RS13920 PF00251 Glycosyl hydrolases family 32 N-terminal domain CMS_RS13920 PF08244 Glycosyl hydrolases family 32 C terminal CMS_RS13925 PF01047 MarR family CMS_RS13935 PF01263 Aldose 1-epimerase CMS_RS13960 PF00365 Phosphofructokinase CMS_RS13965 PF08240 Alcohol dehydrogenase GroES-like domain CMS_RS13965 PF00107 Zinc-binding dehydrogenase CMS_RS13975 PF01126 Heme oxygenase CMS_RS13980 PF01223 DNA/RNA non-specific endonuclease CMS_RS13990 PF00202 Aminotransferase class-III CMS_RS13995 PF00490 Delta-aminolevulinic acid dehydratase CMS_RS14005 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CMS_RS14005 PF03900 Porphobilinogen deaminase, C-terminal domain CMS_RS14010 PF00762 Ferrochelatase CMS_RS14015 PF06778 Chlorite dismutase CMS_RS14045 PF01593 Flavin containing amine oxidoreductase CMS_RS14050 PF01208 Uroporphyrinogen decarboxylase (URO-D) CMS_RS14055 PF01488 Shikimate / quinate 5-dehydrogenase CMS_RS14055 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CMS_RS14055 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CMS_RS14060 PF13302 Acetyltransferase (GNAT) domain CMS_RS14080 PF00962 Adenosine/AMP deaminase CMS_RS14085 PF01156 Inosine-uridine preferring nucleoside hydrolase CMS_RS14090 PF02885 Glycosyl transferase family, helical bundle domain CMS_RS14090 PF00591 Glycosyl transferase family, a/b domain CMS_RS14090 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CMS_RS14095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CMS_RS14100 PF02653 Branched-chain amino acid transport system / permease component CMS_RS14105 PF02653 Branched-chain amino acid transport system / permease component CMS_RS14110 PF00005 ABC transporter CMS_RS14115 PF02608 ABC transporter substrate-binding protein PnrA-like CMS_RS14120 PF02608 ABC transporter substrate-binding protein PnrA-like CMS_RS14125 PF01050 Mannose-6-phosphate isomerase CMS_RS14125 PF00483 Nucleotidyl transferase CMS_RS14130 PF13439 Glycosyltransferase Family 4 CMS_RS14130 PF00534 Glycosyl transferases group 1 CMS_RS14135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CMS_RS14145 PF02910 Fumarate reductase flavoprotein C-term CMS_RS14145 PF00890 FAD binding domain CMS_RS14150 PF13085 2Fe-2S iron-sulfur cluster binding domain CMS_RS14155 PF00391 PEP-utilising enzyme, mobile domain CMS_RS14155 PF05524 PEP-utilising enzyme, N-terminal CMS_RS14155 PF02896 PEP-utilising enzyme, TIM barrel domain CMS_RS14165 PF03372 Endonuclease/Exonuclease/phosphatase family CMS_RS14170 PF00579 tRNA synthetases class I (W and Y) CMS_RS14175 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS14185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CMS_RS14185 PF01872 RibD C-terminal domain CMS_RS14190 PF00677 Lumazine binding domain CMS_RS14195 PF00925 GTP cyclohydrolase II CMS_RS14195 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CMS_RS14200 PF00885 6,7-dimethyl-8-ribityllumazine synthase CMS_RS14205 PF00005 ABC transporter CMS_RS14205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS14210 PF00005 ABC transporter CMS_RS14210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMS_RS14215 PF07690 Major Facilitator Superfamily CMS_RS14225 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS14265 PF07690 Major Facilitator Superfamily CMS_RS14285 PF01384 Phosphate transporter family CMS_RS14290 PF00583 Acetyltransferase (GNAT) family CMS_RS14330 PF07690 Major Facilitator Superfamily CMS_RS14385 PF09364 XFP N-terminal domain CMS_RS14385 PF09363 XFP C-terminal domain CMS_RS14385 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CMS_RS14395 PF00665 Integrase core domain CMS_RS14395 PF13936 Helix-turn-helix domain CMS_RS14410 PF03176 MMPL family CMS_RS14430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CMS_RS14430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CMS_RS14440 PF00665 Integrase core domain CMS_RS14455 PF12833 Helix-turn-helix domain CMS_RS14455 PF12852 Cupin CMS_RS14480 PF00248 Aldo/keto reductase family CMS_RS14485 PF01554 MatE CMS_RS14550 PF00005 ABC transporter CMS_RS14555 PF02653 Branched-chain amino acid transport system / permease component CMS_RS14560 PF13407 Periplasmic binding protein domain CMS_RS14565 PF00356 Bacterial regulatory proteins, lacI family CMS_RS14585 PF05368 NmrA-like family CMS_RS14590 PF02656 Domain of unknown function (DUF202) CMS_RS14625 PF00881 Nitroreductase family CMS_RS14650 PF00005 ABC transporter CMS_RS14655 PF00248 Aldo/keto reductase family CMS_RS14665 PF01638 HxlR-like helix-turn-helix CMS_RS14670 PF05368 NmrA-like family CMS_RS14675 PF02574 Homocysteine S-methyltransferase CMS_RS14685 PF13419 Haloacid dehalogenase-like hydrolase CMS_RS14700 PF11774 Lsr2 CMS_RS14705 PF12728 Helix-turn-helix domain CMS_RS14730 PF02796 Helix-turn-helix domain of resolvase CMS_RS14730 PF00239 Resolvase, N terminal domain CMS_RS14750 PF07729 FCD domain CMS_RS14750 PF00392 Bacterial regulatory proteins, gntR family CMS_RS14755 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CMS_RS14760 PF00857 Isochorismatase family CMS_RS14770 PF00860 Permease family CMS_RS14780 PF00665 Integrase core domain CMS_RS14795 PF00459 Inositol monophosphatase family CMS_RS14805 PF00248 Aldo/keto reductase family CMS_RS14815 PF04461 Protein of unknown function (DUF520) CMS_RS14820 PF13091 PLD-like domain CMS_RS14820 PF13396 Phospholipase_D-nuclease N-terminal CMS_RS14825 PF01047 MarR family CMS_RS14835 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS14840 PF00348 Polyprenyl synthetase CMS_RS14845 PF01209 ubiE/COQ5 methyltransferase family CMS_RS14850 PF00425 chorismate binding enzyme CMS_RS14850 PF04715 Anthranilate synthase component I, N terminal region CMS_RS14865 PF13350 Tyrosine phosphatase family CMS_RS14870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMS_RS14890 PF01040 UbiA prenyltransferase family CMS_RS14895 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS14905 PF05649 Peptidase family M13 CMS_RS14905 PF01431 Peptidase family M13 CMS_RS14925 PF00692 dUTPase CMS_RS14945 PF02447 GntP family permease CMS_RS14955 PF00356 Bacterial regulatory proteins, lacI family CMS_RS14960 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS14965 PF00528 Binding-protein-dependent transport system inner membrane component CMS_RS14975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CMS_RS14975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMS_RS14980 PF03358 NADPH-dependent FMN reductase CMS_RS15000 PF05067 Manganese containing catalase CMS_RS15005 PF00753 Metallo-beta-lactamase superfamily CMS_RS15010 PF00300 Histidine phosphatase superfamily (branch 1) CMS_RS15015 PF01256 Carbohydrate kinase CMS_RS15030 PF01791 DeoC/LacD family aldolase CMS_RS15035 PF02127 Aminopeptidase I zinc metalloprotease (M18) CMS_RS15060 PF05970 PIF1-like helicase CMS_RS15075 PF00005 ABC transporter CMS_RS15080 PF01032 FecCD transport family CMS_RS15085 PF01032 FecCD transport family CMS_RS15100 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) CMS_RS15100 PF05425 Copper resistance protein D CMS_RS15105 PF00216 Bacterial DNA-binding protein CMS_RS15110 PF00253 Ribosomal protein S14p/S29e CMS_RS15115 PF00471 Ribosomal protein L33 CMS_RS15120 PF00830 Ribosomal L28 family CMS_RS15130 PF00950 ABC 3 transport family CMS_RS15145 PF00364 Biotin-requiring enzyme CMS_RS15145 PF02817 e3 binding domain CMS_RS15145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CMS_RS15150 PF02779 Transketolase, pyrimidine binding domain CMS_RS15150 PF02780 Transketolase, C-terminal domain CMS_RS15155 PF00676 Dehydrogenase E1 component CMS_RS15160 PF00155 Aminotransferase class I and II CMS_RS15180 PF01451 Low molecular weight phosphotyrosine protein phosphatase CMS_RS15185 PF00206 Lyase CMS_RS15185 PF08328 Adenylosuccinate lyase C-terminal CMS_RS15205 PF00480 ROK family CMS_RS15210 PF02595 Glycerate kinase family CMS_RS15215 PF00534 Glycosyl transferases group 1 CMS_RS15215 PF13439 Glycosyltransferase Family 4 CMS_RS15220 PF13411 MerR HTH family regulatory protein CMS_RS15225 PF03144 Elongation factor Tu domain 2 CMS_RS15225 PF16658 Class II release factor RF3, C-terminal domain CMS_RS15225 PF00009 Elongation factor Tu GTP binding domain CMS_RS15235 PF03796 DnaB-like helicase C terminal domain CMS_RS15235 PF00772 DnaB-like helicase N terminal domain CMS_RS15240 PF01281 Ribosomal protein L9, N-terminal domain CMS_RS15240 PF03948 Ribosomal protein L9, C-terminal domain CMS_RS15245 PF01084 Ribosomal protein S18 CMS_RS15250 PF00436 Single-strand binding protein family CMS_RS15255 PF01250 Ribosomal protein S6 CMS_RS15260 PF01743 Poly A polymerase head domain CMS_RS15260 PF13735 tRNA nucleotidyltransferase domain 2 putative CMS_RS15260 PF12627 Probable RNA and SrmB- binding site of polymerase A CMS_RS15270 PF03023 Lipid II flippase MurJ CMS_RS15275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMS_RS15280 PF00085 Thioredoxin CMS_RS15285 PF00155 Aminotransferase class I and II CMS_RS15290 PF07478 D-ala D-ala ligase C-terminus CMS_RS15290 PF01820 D-ala D-ala ligase N-terminus CMS_RS15295 PF02195 ParB-like nuclease domain CMS_RS15295 PF17762 HTH domain found in ParB protein CMS_RS15300 PF13614 AAA domain CMS_RS15305 PF02527 rRNA small subunit methyltransferase G CMS_RS15315 PF02096 60Kd inner membrane protein CMS_RS15320 PF01809 Putative membrane protein insertion efficiency factor CMS_RS15325 PF00825 Ribonuclease P CMS_RS15330 PF00468 Ribosomal protein L34 CMS_RS15360 PF13614 AAA domain CMS_RS15525 PF02195 ParB-like nuclease domain CMS_RS15525 PF17762 HTH domain found in ParB protein CMS_RS15570 PF00150 Cellulase (glycosyl hydrolase family 5) CMS_RS15585 PF02796 Helix-turn-helix domain of resolvase CMS_RS15585 PF00239 Resolvase, N terminal domain CMS_RS15615 PF12728 Helix-turn-helix domain CMS_RS15620 PF11774 Lsr2 CMS_RS15635 PF00005 ABC transporter CMS_RS15695 PF00665 Integrase core domain CMS_RS15920 PF00437 Type II/IV secretion system protein CMS_RS16010 PF13614 AAA domain CMS_RS16030 PF02824 TGS domain CMS_RS16030 PF04607 Region found in RelA / SpoT proteins CMS_RS16030 PF13291 ACT domain CMS_RS16120 PF10145 Phage-related minor tail protein CMS_RS16120 PF01551 Peptidase family M23 CMS_RS16120 PF01464 Transglycosylase SLT domain CMS_RS16150 PF01551 Peptidase family M23 CMS_RS16195 PF04536 TPM domain CMS_RS16260 PF02661 Fic/DOC family CMS_RS16335 PF01381 Helix-turn-helix CMS_RS16375 PF04960 Glutaminase CMS_RS16475 PF00248 Aldo/keto reductase family CMS_RS16730 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CMS_RS16845 PF01555 DNA methylase