locus-tag	class	description
CDIF29020_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CDIF29020_RS00010	COG0592	DNA-directed DNA polymerase activity
CDIF29020_RS00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CDIF29020_RS00025	COG0187	DNA topoisomerase II activity
CDIF29020_RS00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CDIF29020_RS00045	COG1366	Belongs to the anti-sigma-factor antagonist family
CDIF29020_RS00055	COG1191	sigma factor activity
CDIF29020_RS00105	COG1827	regulation of RNA biosynthetic process
CDIF29020_RS00110	COG0668	transmembrane transport
CDIF29020_RS00115	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CDIF29020_RS00120	COG0590	tRNA wobble adenosine to inosine editing
CDIF29020_RS00135	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CDIF29020_RS00140	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CDIF29020_RS00145	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CDIF29020_RS00155	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CDIF29020_RS00395	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CDIF29020_RS00400	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CDIF29020_RS00405	COG4463	regulation of RNA biosynthetic process
CDIF29020_RS00410	COG3880	PFAM UvrB UvrC protein
CDIF29020_RS00415	COG3869	Catalyzes the specific phosphorylation of arginine residues in
CDIF29020_RS00420	COG0542	response to heat
CDIF29020_RS00425	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CDIF29020_RS00430	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
CDIF29020_RS00435	COG4956	integral membrane protein (PIN domain superfamily)
CDIF29020_RS00455	COG3507	Belongs to the glycosyl hydrolase 43 family
CDIF29020_RS00465	COG2205	protein histidine kinase activity
CDIF29020_RS00470	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS00480	COG2390	Transcriptional regulator
CDIF29020_RS00485	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CDIF29020_RS00490	COG0022	dehydrogenase e1 component
CDIF29020_RS00495	COG0508	dehydrogenase complex catalyzes the overall conversion of
CDIF29020_RS00500	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CDIF29020_RS00505	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS00505	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS00515	COG3414	Phosphotransferase system galactitol-specific IIB component
CDIF29020_RS00520	COG3775	system Galactitol-specific IIC component
CDIF29020_RS00535	COG0095	Lipoate-protein ligase
CDIF29020_RS00540	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CDIF29020_RS00545	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CDIF29020_RS00550	COG0442	prolyl-tRNA aminoacylation
CDIF29020_RS00555	COG0442	prolyl-tRNA aminoacylation
CDIF29020_RS00560	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CDIF29020_RS00570	COG0215	cysteine-tRNA ligase activity
CDIF29020_RS00585	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CDIF29020_RS00590	COG3688	RNA-binding protein containing a PIN domain
CDIF29020_RS00600	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CDIF29020_RS00605	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CDIF29020_RS00615	COG0250	Participates in transcription elongation, termination and antitermination
CDIF29020_RS00620	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CDIF29020_RS00625	COG0081	regulation of translation
CDIF29020_RS00630	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CDIF29020_RS00635	COG0222	ribosome binding
CDIF29020_RS00645	COG0085	RNA polymerase activity
CDIF29020_RS00650	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CDIF29020_RS00655	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CDIF29020_RS00660	COG0049	tRNA binding
CDIF29020_RS00665	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CDIF29020_RS00670	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CDIF29020_RS00675	COG0051	transcription antitermination factor activity, RNA binding
CDIF29020_RS00680	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CDIF29020_RS00685	COG0088	Forms part of the polypeptide exit tunnel
CDIF29020_RS00690	COG0089	rRNA binding
CDIF29020_RS00695	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CDIF29020_RS00700	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CDIF29020_RS00705	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CDIF29020_RS00710	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CDIF29020_RS00715	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CDIF29020_RS00720	COG0255	Belongs to the universal ribosomal protein uL29 family
CDIF29020_RS00725	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CDIF29020_RS00730	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CDIF29020_RS00735	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CDIF29020_RS00740	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CDIF29020_RS00745	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CDIF29020_RS00750	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CDIF29020_RS00755	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CDIF29020_RS00760	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CDIF29020_RS00765	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CDIF29020_RS00770	COG1841	ribosomal large subunit assembly
CDIF29020_RS00775	COG0200	Binds to the 23S rRNA
CDIF29020_RS00785	COG0563	adenylate kinase activity
CDIF29020_RS00790	COG0024	Methionine aminopeptidase
CDIF29020_RS00800	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CDIF29020_RS00805	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CDIF29020_RS00810	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CDIF29020_RS00815	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CDIF29020_RS00820	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CDIF29020_RS00825	COG0202	RNA polymerase activity
CDIF29020_RS00830	COG0203	ribosomal protein L17
CDIF29020_RS00835	COG1122	ATPase activity
CDIF29020_RS00840	COG1122	ATPase activity
CDIF29020_RS00845	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CDIF29020_RS00850	COG0101	tRNA pseudouridine synthase activity
CDIF29020_RS00855	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CDIF29020_RS00860	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CDIF29020_RS00865	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS01110	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CDIF29020_RS01125	COG0280	phosphate acetyltransferase
CDIF29020_RS01160	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDIF29020_RS01165	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CDIF29020_RS01170	COG2897	thiosulfate sulfurtransferase activity
CDIF29020_RS01180	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CDIF29020_RS01185	COG2385	sporulation resulting in formation of a cellular spore
CDIF29020_RS01195	COG1609	Transcriptional regulator
CDIF29020_RS01200	COG1077	Cell shape determining protein MreB Mrl
CDIF29020_RS01205	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CDIF29020_RS01215	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CDIF29020_RS01220	COG3949	Membrane
CDIF29020_RS01225	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CDIF29020_RS01230	COG1040	competence protein
CDIF29020_RS01235	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS01235	COG3711	transcriptional antiterminator
CDIF29020_RS01240	COG1447	Phosphotransferase system cellobiose-specific component IIA
CDIF29020_RS01245	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS01250	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS01260	COG1446	asparaginase
CDIF29020_RS01265	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDIF29020_RS01275	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CDIF29020_RS01280	COG0653	protein targeting
CDIF29020_RS01285	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CDIF29020_RS01290	COG2183	response to ionizing radiation
CDIF29020_RS01295	COG1228	amidohydrolase
CDIF29020_RS01310	COG0802	atpase or kinase
CDIF29020_RS01315	COG1214	PFAM Peptidase M22, glycoprotease
CDIF29020_RS01320	COG0456	acetyltransferase
CDIF29020_RS01325	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CDIF29020_RS01330	COG1882	Formate acetyltransferase
CDIF29020_RS01340	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CDIF29020_RS01375	COG0534	Mate efflux family protein
CDIF29020_RS01380	COG0488	(ABC) transporter
CDIF29020_RS01385	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CDIF29020_RS01395	COG2221	Nitrite and sulphite reductase 4Fe-4S
CDIF29020_RS01405	COG1151	hydroxylamine reductase activity
CDIF29020_RS01420	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CDIF29020_RS01465	COG0540	Belongs to the ATCase OTCase family
CDIF29020_RS01470	COG0543	2 iron, 2 sulfur cluster binding
CDIF29020_RS01475	COG0167	dihydroorotate dehydrogenase activity
CDIF29020_RS01480	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CDIF29020_RS01490	COG0583	DNA-binding transcription factor activity
CDIF29020_RS01505	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDIF29020_RS01510	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CDIF29020_RS01515	COG0459	protein refolding
CDIF29020_RS01520	COG1691	(AIR) carboxylase
CDIF29020_RS01525	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
CDIF29020_RS01530	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
CDIF29020_RS01535	COG0519	Catalyzes the synthesis of GMP from XMP
CDIF29020_RS01535	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CDIF29020_RS01600	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CDIF29020_RS01605	COG2771	luxR family
CDIF29020_RS01605	COG2200	EAL domain
CDIF29020_RS01620	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS01625	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS01635	COG1011	Hydrolase
CDIF29020_RS01650	COG0778	Nitroreductase
CDIF29020_RS01655	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CDIF29020_RS01660	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CDIF29020_RS01665	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CDIF29020_RS01670	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CDIF29020_RS01675	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CDIF29020_RS01680	COG0138	bifunctional purine biosynthesis protein purh
CDIF29020_RS01685	COG0151	Belongs to the GarS family
CDIF29020_RS01690	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CDIF29020_RS01700	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CDIF29020_RS01710	COG1088	dTDP-glucose 4,6-dehydratase activity
CDIF29020_RS01715	COG0741	lytic transglycosylase activity
CDIF29020_RS01750	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CDIF29020_RS01755	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CDIF29020_RS01770	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CDIF29020_RS01780	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CDIF29020_RS01790	COG1215	transferase activity, transferring glycosyl groups
CDIF29020_RS01840	COG1454	alcohol dehydrogenase
CDIF29020_RS01845	COG1533	DNA photolyase activity
CDIF29020_RS01860	COG1733	regulation of RNA biosynthetic process
CDIF29020_RS01875	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CDIF29020_RS01880	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS01880	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS01885	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS01885	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS01910	COG3716	PTS system mannose fructose sorbose family IID component
CDIF29020_RS01920	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDIF29020_RS01940	COG1131	(ABC) transporter
CDIF29020_RS01960	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CDIF29020_RS01970	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDIF29020_RS01975	COG1879	ABC-type sugar transport system periplasmic component
CDIF29020_RS01980	COG1129	ABC transporter
CDIF29020_RS01985	COG1172	Belongs to the binding-protein-dependent transport system permease family
CDIF29020_RS01990	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDIF29020_RS02000	COG1473	amidohydrolase
CDIF29020_RS02045	COG2217	Heavy metal translocating P-type atpase
CDIF29020_RS02065	COG0586	Pfam SNARE associated Golgi protein
CDIF29020_RS02085	COG1930	Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import
CDIF29020_RS02095	COG1122	ATPase activity
CDIF29020_RS02100	COG0210	DNA helicase
CDIF29020_RS02105	COG1362	aminopeptidase activity
CDIF29020_RS02115	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CDIF29020_RS02130	COG1012	belongs to the aldehyde dehydrogenase family
CDIF29020_RS02130	COG1454	alcohol dehydrogenase
CDIF29020_RS02140	COG1136	(ABC) transporter
CDIF29020_RS02175	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDIF29020_RS02180	COG2357	RelA SpoT domain protein
CDIF29020_RS02200	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
CDIF29020_RS02225	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS02225	COG1263	PTS System
CDIF29020_RS02225	COG2190	(PTS) system
CDIF29020_RS02230	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS02235	COG3711	transcriptional antiterminator
CDIF29020_RS02240	COG0367	asparagine synthase
CDIF29020_RS02255	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CDIF29020_RS02280	COG1960	acyl-CoA dehydrogenase activity
CDIF29020_RS02285	COG2086	electron transfer activity
CDIF29020_RS02290	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CDIF29020_RS02295	COG3829	transcription factor binding
CDIF29020_RS02300	COG0191	fructose-bisphosphate aldolase activity
CDIF29020_RS02310	COG1187	pseudouridine synthase activity
CDIF29020_RS02375	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CDIF29020_RS02380	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS02395	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CDIF29020_RS02415	COG3254	rhamnose metabolic process
CDIF29020_RS02435	COG0626	cystathionine gamma-synthase activity
CDIF29020_RS02445	COG3829	transcription factor binding
CDIF29020_RS02450	COG3804	dihydrodipicolinate reductase
CDIF29020_RS02460	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CDIF29020_RS02470	COG5012	cobalamin binding
CDIF29020_RS02480	COG3457	Alanine racemase
CDIF29020_RS02485	COG1757	Na H antiporter
CDIF29020_RS02500	COG1051	belongs to the nudix hydrolase family
CDIF29020_RS02515	COG3973	AAA domain
CDIF29020_RS02525	COG1136	(ABC) transporter
CDIF29020_RS02535	COG5002	protein histidine kinase activity
CDIF29020_RS02540	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS02560	COG1131	(ABC) transporter
CDIF29020_RS02640	COG1595	DNA-templated transcription, initiation
CDIF29020_RS02720	COG0768	penicillin binding
CDIF29020_RS02745	COG1131	(ABC) transporter
CDIF29020_RS02760	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS02765	COG5002	protein histidine kinase activity
CDIF29020_RS02770	COG1136	(ABC) transporter
CDIF29020_RS02770	COG0577	efflux transmembrane transporter activity
CDIF29020_RS02775	COG1136	(ABC) transporter
CDIF29020_RS02800	COG3620	sequence-specific DNA binding
CDIF29020_RS02810	COG1674	ftsk spoiiie
CDIF29020_RS02820	COG2946	Replication initiation factor
CDIF29020_RS02870	COG0741	lytic transglycosylase activity
CDIF29020_RS02870	COG0791	NLP P60 protein
CDIF29020_RS02880	COG3708	Transcriptional regulator
CDIF29020_RS02880	COG2207	Transcriptional regulator
CDIF29020_RS02885	COG1132	(ABC) transporter
CDIF29020_RS02885	COG2375	cellular response to nickel ion
CDIF29020_RS02950	COG0456	acetyltransferase
CDIF29020_RS02960	COG2226	methyltransferase
CDIF29020_RS02970	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CDIF29020_RS02985	COG1132	(ABC) transporter
CDIF29020_RS03025	COG5002	protein histidine kinase activity
CDIF29020_RS03030	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS03035	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CDIF29020_RS03050	COG1063	alcohol dehydrogenase
CDIF29020_RS03060	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS03070	COG3716	PTS system mannose fructose sorbose family IID component
CDIF29020_RS03080	COG5002	protein histidine kinase activity
CDIF29020_RS03090	COG1686	Belongs to the peptidase S11 family
CDIF29020_RS03095	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS03095	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS03115	COG2205	protein histidine kinase activity
CDIF29020_RS03140	COG2195	Cleaves the N-terminal amino acid of tripeptides
CDIF29020_RS03145	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CDIF29020_RS03165	COG2378	regulation of single-species biofilm formation
CDIF29020_RS03175	COG2201	protein-glutamate methylesterase activity
CDIF29020_RS03180	COG1776	CheC inhibitor of MCP methylation
CDIF29020_RS03185	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CDIF29020_RS03190	COG0835	chemotaxis
CDIF29020_RS03200	COG0840	transmembrane signaling receptor activity
CDIF29020_RS03205	COG2198	Histidine kinase
CDIF29020_RS03205	COG0643	Histidine kinase
CDIF29020_RS03210	COG0835	chemotaxis
CDIF29020_RS03220	COG2201	protein-glutamate methylesterase activity
CDIF29020_RS03270	COG2339	peptidase activity
CDIF29020_RS03275	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CDIF29020_RS03275	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CDIF29020_RS03280	COG0681	Belongs to the peptidase S26 family
CDIF29020_RS03295	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CDIF29020_RS03300	COG2066	Belongs to the glutaminase family
CDIF29020_RS03310	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CDIF29020_RS03330	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CDIF29020_RS03335	COG1067	ATP-dependent peptidase activity
CDIF29020_RS03340	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CDIF29020_RS03345	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CDIF29020_RS03355	COG1744	ABC transporter substrate-binding protein PnrA-like
CDIF29020_RS03390	COG4399	Belongs to the UPF0754 family
CDIF29020_RS03390	COG4399	Belongs to the UPF0754 family
CDIF29020_RS03395	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CDIF29020_RS03440	COG1309	transcriptional regulator
CDIF29020_RS03445	COG3848	Pyruvate phosphate dikinase
CDIF29020_RS03445	COG0574	Belongs to the PEP-utilizing enzyme family
CDIF29020_RS03455	COG1716	ATPase activity
CDIF29020_RS03455	COG5001	Diguanylate cyclase
CDIF29020_RS03460	COG2199	diguanylate cyclase activity
CDIF29020_RS03505	COG3969	phosphoadenosine phosphosulfate
CDIF29020_RS03510	COG1475	DNA binding
CDIF29020_RS03525	COG3546	catalase activity
CDIF29020_RS03535	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CDIF29020_RS03550	COG0456	acetyltransferase
CDIF29020_RS03550	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CDIF29020_RS03585	COG0789	Transcriptional regulator
CDIF29020_RS03585	COG4978	Transcriptional regulator
CDIF29020_RS03630	COG0305	Participates in initiation and elongation during chromosome replication
CDIF29020_RS03650	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CDIF29020_RS03710	COG1131	(ABC) transporter
CDIF29020_RS03720	COG1802	Transcriptional regulator
CDIF29020_RS03725	COG0823	Involved in the tonB-independent uptake of proteins
CDIF29020_RS03725	COG1506	peptidase
CDIF29020_RS03725	COG4946	Tricorn protease homolog
CDIF29020_RS03730	COG0823	Involved in the tonB-independent uptake of proteins
CDIF29020_RS03730	COG1506	peptidase
CDIF29020_RS03730	COG4946	Tricorn protease homolog
CDIF29020_RS03740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS03760	COG0038	chloride channel
CDIF29020_RS03845	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS03850	COG2205	protein histidine kinase activity
CDIF29020_RS03850	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS03850	COG3292	Two component regulator propeller
CDIF29020_RS03885	COG1595	DNA-templated transcription, initiation
CDIF29020_RS03895	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CDIF29020_RS03900	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CDIF29020_RS03905	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CDIF29020_RS03955	COG0789	Transcriptional regulator
CDIF29020_RS03975	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CDIF29020_RS03980	COG0569	domain protein
CDIF29020_RS03985	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CDIF29020_RS03990	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CDIF29020_RS03995	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CDIF29020_RS03995	COG0072	phenylalanine-tRNA ligase activity
CDIF29020_RS04020	COG0826	peptidase U32
CDIF29020_RS04030	COG1051	belongs to the nudix hydrolase family
CDIF29020_RS04040	COG3706	GGDEF domain
CDIF29020_RS04045	COG2195	Cleaves the N-terminal amino acid of tripeptides
CDIF29020_RS04050	COG1193	negative regulation of DNA recombination
CDIF29020_RS04055	COG1683	Conserved Protein
CDIF29020_RS04060	COG0018	arginyl-trna synthetase
CDIF29020_RS04085	COG0583	DNA-binding transcription factor activity
CDIF29020_RS04090	COG0110	maltose O-acetyltransferase activity
CDIF29020_RS04095	COG0280	phosphate acetyltransferase
CDIF29020_RS04100	COG1151	hydroxylamine reductase activity
CDIF29020_RS04110	COG2759	Belongs to the formate--tetrahydrofolate ligase family
CDIF29020_RS04115	COG3404	Formiminotransferase-cyclodeaminase
CDIF29020_RS04120	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CDIF29020_RS04130	COG0646	methionine synthase
CDIF29020_RS04130	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CDIF29020_RS04135	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CDIF29020_RS04165	COG0509	glycine decarboxylation via glycine cleavage system
CDIF29020_RS04185	COG0095	Lipoate-protein ligase
CDIF29020_RS04205	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CDIF29020_RS04220	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CDIF29020_RS04220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CDIF29020_RS04230	COG3192	ethanolamine utilization protein
CDIF29020_RS04235	COG1349	DNA-binding transcription factor activity
CDIF29020_RS04245	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CDIF29020_RS04250	COG1360	Flagellar Motor Protein
CDIF29020_RS04270	COG0210	DNA helicase
CDIF29020_RS04275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CDIF29020_RS04280	COG0765	amino acid transport
CDIF29020_RS04285	COG1126	abc transporter atp-binding protein
CDIF29020_RS04295	COG0301	tRNA thio-modification
CDIF29020_RS04305	COG0778	Nitroreductase
CDIF29020_RS04310	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CDIF29020_RS04320	COG0530	calcium, potassium:sodium antiporter activity
CDIF29020_RS04325	COG0513	Belongs to the DEAD box helicase family
CDIF29020_RS04345	COG3732	PTS system glucitol sorbitol-specific
CDIF29020_RS04360	COG1028	Short-chain dehydrogenase reductase Sdr
CDIF29020_RS04365	COG0243	molybdopterin cofactor binding
CDIF29020_RS04370	COG1366	Belongs to the anti-sigma-factor antagonist family
CDIF29020_RS04375	COG2172	sigma factor antagonist activity
CDIF29020_RS04380	COG1191	sigma factor activity
CDIF29020_RS04390	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CDIF29020_RS04415	COG1473	amidohydrolase
CDIF29020_RS04425	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CDIF29020_RS04435	COG0750	zinc metalloprotease
CDIF29020_RS04440	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS04445	COG0488	(ABC) transporter
CDIF29020_RS04460	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CDIF29020_RS04475	COG1739	Uncharacterized protein family UPF0029
CDIF29020_RS04485	COG0730	response to heat
CDIF29020_RS04490	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CDIF29020_RS04495	COG0217	transcriptional regulatory protein
CDIF29020_RS04500	COG1024	Enoyl-CoA hydratase
CDIF29020_RS04505	COG2610	gluconate transmembrane transporter activity
CDIF29020_RS04520	COG2086	electron transfer activity
CDIF29020_RS04525	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CDIF29020_RS04570	COG2186	Transcriptional regulator
CDIF29020_RS04575	COG2814	Major facilitator Superfamily
CDIF29020_RS04580	COG2190	(PTS) system
CDIF29020_RS04580	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS04580	COG1263	PTS System
CDIF29020_RS04585	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS04595	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS04600	COG5002	protein histidine kinase activity
CDIF29020_RS04620	COG1592	Rubrerythrin
CDIF29020_RS04630	COG2033	superoxide reductase activity
CDIF29020_RS04635	COG0069	glutamate synthase activity
CDIF29020_RS04680	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CDIF29020_RS04690	COG0473	3-isopropylmalate dehydrogenase activity
CDIF29020_RS04695	COG1846	Transcriptional regulator
CDIF29020_RS04720	COG0179	Fumarylacetoacetate (FAA) hydrolase
CDIF29020_RS04725	COG0138	bifunctional purine biosynthesis protein purh
CDIF29020_RS04735	COG0438	transferase activity, transferring glycosyl groups
CDIF29020_RS04735	COG0297	glycogen (starch) synthase activity
CDIF29020_RS04800	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CDIF29020_RS04815	COG0601	transmembrane transport
CDIF29020_RS04820	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CDIF29020_RS04830	COG0444	Belongs to the ABC transporter superfamily
CDIF29020_RS04835	COG4608	Belongs to the ABC transporter superfamily
CDIF29020_RS04840	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS04840	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS04855	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS04865	COG1486	melibiose metabolic process
CDIF29020_RS04875	COG1073	alpha beta
CDIF29020_RS04885	COG1910	domain protein
CDIF29020_RS04890	COG0725	ABC transporter, periplasmic molybdate-binding protein
CDIF29020_RS04895	COG4149	molybdate abc transporter
CDIF29020_RS04900	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CDIF29020_RS04905	COG0110	maltose O-acetyltransferase activity
CDIF29020_RS04920	COG4120	Belongs to the binding-protein-dependent transport system permease family
CDIF29020_RS04925	COG2984	ABC transporter substrate binding protein
CDIF29020_RS04935	COG4120	Belongs to the binding-protein-dependent transport system permease family
CDIF29020_RS04940	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CDIF29020_RS04940	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CDIF29020_RS04955	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CDIF29020_RS04960	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CDIF29020_RS04965	COG0297	glycogen (starch) synthase activity
CDIF29020_RS04970	COG0058	SHG alpha-glucan phosphorylase activity
CDIF29020_RS04980	COG1802	Transcriptional regulator
CDIF29020_RS04985	COG1982	Orn Lys Arg decarboxylase major
CDIF29020_RS04990	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
CDIF29020_RS04995	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CDIF29020_RS05000	COG0010	Belongs to the arginase family
CDIF29020_RS05035	COG4868	Belongs to the UPF0371 family
CDIF29020_RS05040	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CDIF29020_RS05050	COG1174	glycine betaine transport
CDIF29020_RS05055	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CDIF29020_RS05085	COG0534	Mate efflux family protein
CDIF29020_RS05090	COG0539	negative regulation of cytoplasmic translation
CDIF29020_RS05090	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CDIF29020_RS05095	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CDIF29020_RS05105	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CDIF29020_RS05110	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CDIF29020_RS05115	COG0066	3-isopropylmalate dehydratase activity
CDIF29020_RS05120	COG0473	3-isopropylmalate dehydrogenase activity
CDIF29020_RS05135	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CDIF29020_RS05150	COG3447	MASE1 domain protein
CDIF29020_RS05150	COG5001	Diguanylate cyclase
CDIF29020_RS05150	COG5002	protein histidine kinase activity
CDIF29020_RS05175	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CDIF29020_RS05180	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CDIF29020_RS05190	COG0281	malic enzyme
CDIF29020_RS05205	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS05210	COG5002	protein histidine kinase activity
CDIF29020_RS05215	COG1136	(ABC) transporter
CDIF29020_RS05215	COG0577	efflux transmembrane transporter activity
CDIF29020_RS05235	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CDIF29020_RS05240	COG0363	glucosamine-6-phosphate deaminase activity
CDIF29020_RS05255	COG5002	protein histidine kinase activity
CDIF29020_RS05260	COG5001	Diguanylate cyclase
CDIF29020_RS05270	COG4978	Transcriptional regulator
CDIF29020_RS05270	COG0789	Transcriptional regulator
CDIF29020_RS05280	COG1132	(ABC) transporter
CDIF29020_RS05300	COG2364	Membrane
CDIF29020_RS05310	COG3842	ATPase activity
CDIF29020_RS05315	COG1176	ABC-type spermidine putrescine transport system, permease component I
CDIF29020_RS05320	COG1177	transmembrane transport
CDIF29020_RS05325	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CDIF29020_RS05335	COG5298	Protein conserved in bacteria
CDIF29020_RS05340	COG1215	transferase activity, transferring glycosyl groups
CDIF29020_RS05355	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CDIF29020_RS05385	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS05390	COG2247	cell wall binding repeat
CDIF29020_RS05390	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS05400	COG1074	ATP-dependent DNA helicase activity
CDIF29020_RS05410	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
CDIF29020_RS05415	COG1074	ATP-dependent DNA helicase activity
CDIF29020_RS05420	COG0420	3'-5' exonuclease activity
CDIF29020_RS05425	COG0419	ATPase involved in DNA repair
CDIF29020_RS05430	COG4536	flavin adenine dinucleotide binding
CDIF29020_RS05440	COG2195	Cleaves the N-terminal amino acid of tripeptides
CDIF29020_RS05450	COG0622	Phosphoesterase
CDIF29020_RS05455	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CDIF29020_RS05460	COG1131	(ABC) transporter
CDIF29020_RS05480	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CDIF29020_RS05485	COG1960	acyl-CoA dehydrogenase activity
CDIF29020_RS05490	COG2086	electron transfer activity
CDIF29020_RS05495	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CDIF29020_RS05510	COG0183	Belongs to the thiolase family
CDIF29020_RS05515	COG0564	pseudouridine synthase activity
CDIF29020_RS05525	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CDIF29020_RS05580	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CDIF29020_RS05585	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS05590	COG4224	UPF0291 protein
CDIF29020_RS05595	COG1362	aminopeptidase activity
CDIF29020_RS05600	COG2188	Transcriptional regulator
CDIF29020_RS05620	COG3715	PTS system
CDIF29020_RS05625	COG3716	PTS system mannose fructose sorbose family IID component
CDIF29020_RS05630	COG0583	DNA-binding transcription factor activity
CDIF29020_RS05650	COG3414	Phosphotransferase system galactitol-specific IIB component
CDIF29020_RS05655	COG1132	(ABC) transporter
CDIF29020_RS05665	COG1473	amidohydrolase
CDIF29020_RS05680	COG3279	Response regulator of the LytR AlgR family
CDIF29020_RS05695	COG1882	Formate acetyltransferase
CDIF29020_RS05700	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CDIF29020_RS05705	COG1396	sequence-specific DNA binding
CDIF29020_RS05730	COG3708	Transcriptional regulator
CDIF29020_RS05730	COG2207	Transcriptional regulator
CDIF29020_RS05765	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CDIF29020_RS05765	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CDIF29020_RS05770	COG0237	dephospho-CoA kinase activity
CDIF29020_RS05795	COG0346	lactoylglutathione lyase activity
CDIF29020_RS05800	COG0791	NLP P60 protein
CDIF29020_RS05810	COG4656	Part of a membrane complex involved in electron transport
CDIF29020_RS05815	COG4658	electron transport chain
CDIF29020_RS05820	COG4659	FMN binding
CDIF29020_RS05825	COG4660	Part of a membrane complex involved in electron transport
CDIF29020_RS05830	COG4657	Part of a membrane complex involved in electron transport
CDIF29020_RS05835	COG2878	Part of a membrane complex involved in electron transport
CDIF29020_RS05835	COG1245	4Fe-4S binding domain
CDIF29020_RS05840	COG0424	maF-like protein
CDIF29020_RS05845	COG2003	Belongs to the UPF0758 family
CDIF29020_RS05850	COG1077	Cell shape determining protein MreB Mrl
CDIF29020_RS05870	COG0850	regulation of cytokinetic process
CDIF29020_RS05875	COG2894	cell division
CDIF29020_RS05880	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CDIF29020_RS05885	COG0772	Belongs to the SEDS family
CDIF29020_RS05890	COG1803	Methylglyoxal synthase
CDIF29020_RS05895	COG1695	Transcriptional regulator
CDIF29020_RS05910	COG0426	domain, Protein
CDIF29020_RS05925	COG1530	ribonuclease E activity
CDIF29020_RS05930	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CDIF29020_RS05940	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CDIF29020_RS05945	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CDIF29020_RS05955	COG0460	homoserine dehydrogenase
CDIF29020_RS05965	COG3314	Sporulation integral membrane protein YlbJ
CDIF29020_RS05970	COG2186	Transcriptional regulator
CDIF29020_RS05975	COG3875	lactate racemase activity
CDIF29020_RS05980	COG2086	electron transfer activity
CDIF29020_RS05985	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CDIF29020_RS05990	COG0277	FAD linked oxidase domain protein
CDIF29020_RS05995	COG1323	Belongs to the UPF0348 family
CDIF29020_RS06000	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CDIF29020_RS06010	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CDIF29020_RS06020	COG0416	fatty acid biosynthetic process
CDIF29020_RS06025	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CDIF29020_RS06035	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CDIF29020_RS06040	COG1028	Short-chain dehydrogenase reductase Sdr
CDIF29020_RS06045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CDIF29020_RS06050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CDIF29020_RS06055	COG3706	GGDEF domain
CDIF29020_RS06070	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CDIF29020_RS06085	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
CDIF29020_RS06090	COG3854	ATPases associated with a variety of cellular activities
CDIF29020_RS06130	COG1302	Protein conserved in bacteria
CDIF29020_RS06135	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CDIF29020_RS06140	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CDIF29020_RS06145	COG1570	exodeoxyribonuclease VII activity
CDIF29020_RS06150	COG1722	exodeoxyribonuclease VII activity
CDIF29020_RS06160	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
CDIF29020_RS06165	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CDIF29020_RS06170	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CDIF29020_RS06175	COG0497	DNA recombination
CDIF29020_RS06185	COG0456	acetyltransferase
CDIF29020_RS06190	COG0456	acetyltransferase
CDIF29020_RS06195	COG0750	zinc metalloprotease
CDIF29020_RS06230	COG0494	nUDIX hydrolase
CDIF29020_RS06240	COG4974	Belongs to the 'phage' integrase family
CDIF29020_RS06245	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CDIF29020_RS06260	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CDIF29020_RS06265	COG4122	O-methyltransferase activity
CDIF29020_RS06270	COG0826	peptidase U32
CDIF29020_RS06275	COG0768	penicillin binding
CDIF29020_RS06390	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CDIF29020_RS06400	COG0571	ribonuclease III activity
CDIF29020_RS06410	COG1196	nuclear chromosome segregation
CDIF29020_RS06415	COG0552	protein localization to endoplasmic reticulum
CDIF29020_RS06425	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CDIF29020_RS06430	COG0228	four-way junction DNA binding
CDIF29020_RS06440	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CDIF29020_RS06445	COG0336	Belongs to the RNA methyltransferase TrmD family
CDIF29020_RS06450	COG0335	large ribosomal subunit rRNA binding
CDIF29020_RS06460	COG1114	Component of the transport system for branched-chain amino acids
CDIF29020_RS06475	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CDIF29020_RS06505	COG1131	(ABC) transporter
CDIF29020_RS06510	COG2197	response regulator
CDIF29020_RS06515	COG4585	Histidine kinase
CDIF29020_RS06520	COG0792	nuclease activity
CDIF29020_RS06525	COG0606	chelatase, subunit chli
CDIF29020_RS06530	COG0758	DNA mediated transformation
CDIF29020_RS06535	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CDIF29020_RS06545	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CDIF29020_RS06555	COG1959	2 iron, 2 sulfur cluster binding
CDIF29020_RS06565	COG0822	iron-sulfur transferase activity
CDIF29020_RS06570	COG0482	sulfurtransferase activity
CDIF29020_RS06575	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CDIF29020_RS06580	COG4472	Bacterial protein of unknown function (DUF965)
CDIF29020_RS06590	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CDIF29020_RS06595	COG3906	Belongs to the UPF0473 family
CDIF29020_RS06600	COG0735	belongs to the Fur family
CDIF29020_RS06610	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CDIF29020_RS06620	COG1686	Belongs to the peptidase S11 family
CDIF29020_RS06630	COG2207	Transcriptional regulator
CDIF29020_RS06630	COG1917	Cupin 2, conserved barrel domain protein
CDIF29020_RS06635	COG1994	Peptidase M50
CDIF29020_RS06645	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CDIF29020_RS06700	COG0779	Required for maturation of 30S ribosomal subunits
CDIF29020_RS06705	COG0195	Participates in both transcription termination and antitermination
CDIF29020_RS06710	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CDIF29020_RS06720	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CDIF29020_RS06730	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CDIF29020_RS06735	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CDIF29020_RS06740	COG0196	riboflavin kinase activity
CDIF29020_RS06750	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CDIF29020_RS06755	COG1307	EDD domain protein, DegV family
CDIF29020_RS06760	COG1185	polyribonucleotide nucleotidyltransferase activity
CDIF29020_RS06765	COG0726	polysaccharide deacetylase
CDIF29020_RS06770	COG0612	Peptidase, M16
CDIF29020_RS06775	COG1873	PFAM PRC-barrel domain
CDIF29020_RS06780	COG0527	aspartate kinase activity
CDIF29020_RS06785	COG0740	serine-type endopeptidase activity
CDIF29020_RS06795	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CDIF29020_RS06800	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CDIF29020_RS06810	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CDIF29020_RS06815	COG1418	mRNA catabolic process
CDIF29020_RS06820	COG5001	Diguanylate cyclase
CDIF29020_RS06855	COG1968	undecaprenyl-diphosphatase activity
CDIF29020_RS06865	COG0114	fumarate hydratase activity
CDIF29020_RS06875	COG0436	Aminotransferase
CDIF29020_RS06885	COG0708	Exodeoxyribonuclease III
CDIF29020_RS06900	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CDIF29020_RS06925	COG1131	(ABC) transporter
CDIF29020_RS06955	COG1278	Cold shock
CDIF29020_RS06965	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDIF29020_RS07045	COG3299	homolog of phage Mu protein gp47
CDIF29020_RS07050	COG3778	Protein conserved in bacteria
CDIF29020_RS07080	COG1396	sequence-specific DNA binding
CDIF29020_RS07095	COG1396	sequence-specific DNA binding
CDIF29020_RS07100	COG2814	Major facilitator Superfamily
CDIF29020_RS07110	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CDIF29020_RS07115	COG0471	metal ion transport
CDIF29020_RS07115	COG3273	potassium ion transport
CDIF29020_RS07120	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CDIF29020_RS07125	COG1914	H( )-stimulated, divalent metal cation uptake system
CDIF29020_RS07130	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CDIF29020_RS07135	COG1984	allophanate hydrolase subunit 2
CDIF29020_RS07140	COG1396	sequence-specific DNA binding
CDIF29020_RS07145	COG4948	Mandelate Racemase Muconate Lactonizing
CDIF29020_RS07190	COG1473	amidohydrolase
CDIF29020_RS07195	COG1619	proteins homologs of microcin C7 resistance protein MccF
CDIF29020_RS07210	COG0584	glycerophosphoryl diester phosphodiesterase
CDIF29020_RS07255	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS07260	COG1181	Belongs to the D-alanine--D-alanine ligase family
CDIF29020_RS07265	COG1546	Belongs to the CinA family
CDIF29020_RS07265	COG1058	Belongs to the CinA family
CDIF29020_RS07280	COG3829	transcription factor binding
CDIF29020_RS07290	COG1242	4 iron, 4 sulfur cluster binding
CDIF29020_RS07315	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CDIF29020_RS07320	COG3447	MASE1 domain protein
CDIF29020_RS07320	COG5002	protein histidine kinase activity
CDIF29020_RS07320	COG5001	Diguanylate cyclase
CDIF29020_RS07325	COG2199	diguanylate cyclase activity
CDIF29020_RS07325	COG2203	Gaf domain
CDIF29020_RS07335	COG0789	Transcriptional regulator
CDIF29020_RS07335	COG4978	Transcriptional regulator
CDIF29020_RS07345	COG1285	pathogenesis
CDIF29020_RS07360	COG0726	polysaccharide deacetylase
CDIF29020_RS07375	COG0450	alkyl hydroperoxide reductase
CDIF29020_RS07390	COG2720	vancomycin resistance protein
CDIF29020_RS07395	COG3829	transcription factor binding
CDIF29020_RS07410	COG1346	cytolysis
CDIF29020_RS07415	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CDIF29020_RS07425	COG2340	Cysteine-rich secretory protein family
CDIF29020_RS07430	COG0726	polysaccharide deacetylase
CDIF29020_RS07435	COG0512	Glutamine amidotransferase of anthranilate synthase
CDIF29020_RS07440	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CDIF29020_RS07445	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CDIF29020_RS07455	COG0302	gtp cyclohydrolase
CDIF29020_RS07460	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CDIF29020_RS07465	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CDIF29020_RS07470	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CDIF29020_RS07475	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CDIF29020_RS07480	COG0358	DNA primase activity
CDIF29020_RS07485	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CDIF29020_RS07490	COG2384	SAM-dependent methyltransferase
CDIF29020_RS07495	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CDIF29020_RS07500	COG0655	NAD(P)H dehydrogenase (quinone) activity
CDIF29020_RS07520	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS07530	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS07535	COG5002	protein histidine kinase activity
CDIF29020_RS07535	COG3850	Histidine kinase
CDIF29020_RS07540	COG0577	efflux transmembrane transporter activity
CDIF29020_RS07540	COG1136	(ABC) transporter
CDIF29020_RS07570	COG1132	(ABC) transporter
CDIF29020_RS07575	COG1132	(ABC) transporter
CDIF29020_RS07580	COG1773	rubredoxin
CDIF29020_RS07580	COG1592	Rubrerythrin
CDIF29020_RS07585	COG0412	Dienelactone hydrolase
CDIF29020_RS07625	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CDIF29020_RS07660	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CDIF29020_RS07665	COG2011	ABC-type metal ion transport system permease component
CDIF29020_RS07670	COG1464	Belongs to the NlpA lipoprotein family
CDIF29020_RS07675	COG5002	protein histidine kinase activity
CDIF29020_RS07680	COG2094	Belongs to the DNA glycosylase MPG family
CDIF29020_RS07685	COG1396	sequence-specific DNA binding
CDIF29020_RS07690	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CDIF29020_RS07695	COG4086	secreted protein
CDIF29020_RS07715	COG0803	Belongs to the bacterial solute-binding protein 9 family
CDIF29020_RS07720	COG1121	(ABC) transporter
CDIF29020_RS07725	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CDIF29020_RS07730	COG0523	cobalamin synthesis protein
CDIF29020_RS07735	COG0701	Predicted permease
CDIF29020_RS07750	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CDIF29020_RS07760	COG1131	(ABC) transporter
CDIF29020_RS07770	COG0534	Mate efflux family protein
CDIF29020_RS07785	COG3901	Regulator of nitric oxide reductase transcription
CDIF29020_RS07785	COG0348	domain, Protein
CDIF29020_RS07810	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CDIF29020_RS07815	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CDIF29020_RS07825	COG5001	Diguanylate cyclase
CDIF29020_RS07830	COG0789	Transcriptional regulator
CDIF29020_RS07830	COG4978	Transcriptional regulator
CDIF29020_RS07835	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CDIF29020_RS07855	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CDIF29020_RS07860	COG0726	polysaccharide deacetylase
CDIF29020_RS07870	COG1592	Rubrerythrin
CDIF29020_RS07870	COG1773	rubredoxin
CDIF29020_RS07875	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDIF29020_RS07880	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CDIF29020_RS07885	COG0577	efflux transmembrane transporter activity
CDIF29020_RS07890	COG0577	efflux transmembrane transporter activity
CDIF29020_RS07890	COG1136	(ABC) transporter
CDIF29020_RS07900	COG2205	protein histidine kinase activity
CDIF29020_RS07905	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS07910	COG1136	(ABC) transporter
CDIF29020_RS07915	COG0577	efflux transmembrane transporter activity
CDIF29020_RS07920	COG0405	Gamma-glutamyltransferase
CDIF29020_RS07935	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDIF29020_RS07935	COG0493	'glutamate synthase
CDIF29020_RS07945	COG1136	(ABC) transporter
CDIF29020_RS07950	COG0577	efflux transmembrane transporter activity
CDIF29020_RS07990	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CDIF29020_RS07995	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CDIF29020_RS08000	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CDIF29020_RS08005	COG0131	Imidazoleglycerol-phosphate dehydratase
CDIF29020_RS08010	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CDIF29020_RS08015	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CDIF29020_RS08020	COG0107	imidazoleglycerol-phosphate synthase activity
CDIF29020_RS08025	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CDIF29020_RS08025	COG0140	phosphoribosyl-ATP diphosphatase activity
CDIF29020_RS08030	COG0531	amino acid
CDIF29020_RS08045	COG1595	DNA-templated transcription, initiation
CDIF29020_RS08060	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CDIF29020_RS08075	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CDIF29020_RS08085	COG3546	catalase activity
CDIF29020_RS08090	COG1331	Highly conserved protein containing a thioredoxin domain
CDIF29020_RS08100	COG2267	carboxylic ester hydrolase activity
CDIF29020_RS08105	COG1136	(ABC) transporter
CDIF29020_RS08125	COG1388	LysM domain
CDIF29020_RS08125	COG3584	3D domain protein
CDIF29020_RS08135	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDIF29020_RS08140	COG1295	ribonuclease BN
CDIF29020_RS08145	COG5002	protein histidine kinase activity
CDIF29020_RS08150	COG0460	homoserine dehydrogenase
CDIF29020_RS08160	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CDIF29020_RS08165	COG0596	Alpha beta hydrolase
CDIF29020_RS08180	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CDIF29020_RS08190	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CDIF29020_RS08195	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CDIF29020_RS08200	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CDIF29020_RS08205	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CDIF29020_RS08210	COG1045	serine acetyltransferase
CDIF29020_RS08220	COG0024	Methionine aminopeptidase
CDIF29020_RS08235	COG0351	phosphomethylpyrimidine kinase
CDIF29020_RS08240	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CDIF29020_RS08245	COG0352	thiamine-phosphate diphosphorylase activity
CDIF29020_RS08250	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS08270	COG1725	Transcriptional regulator
CDIF29020_RS08275	COG1131	(ABC) transporter
CDIF29020_RS08300	COG0402	S-adenosylhomocysteine deaminase activity
CDIF29020_RS08310	COG4555	ABC transporter
CDIF29020_RS08315	COG1668	transmembrane transport
CDIF29020_RS08320	COG5001	Diguanylate cyclase
CDIF29020_RS08320	COG3300	MHYT domain
CDIF29020_RS08325	COG1725	Transcriptional regulator
CDIF29020_RS08330	COG1131	(ABC) transporter
CDIF29020_RS08345	COG0668	transmembrane transport
CDIF29020_RS08355	COG0426	domain, Protein
CDIF29020_RS08375	COG0367	asparagine synthase
CDIF29020_RS08380	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CDIF29020_RS08395	COG2310	stress, protein
CDIF29020_RS08410	COG3853	Toxic anion resistance protein (TelA)
CDIF29020_RS08440	COG5505	Protein of unknown function (DUF819)
CDIF29020_RS08450	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CDIF29020_RS08455	COG4605	iron ion homeostasis
CDIF29020_RS08460	COG4604	ABC transporter, ATP-binding protein
CDIF29020_RS08465	COG4607	ABC-type enterochelin transport system periplasmic component
CDIF29020_RS08470	COG2203	Gaf domain
CDIF29020_RS08470	COG5001	Diguanylate cyclase
CDIF29020_RS08470	COG3706	GGDEF domain
CDIF29020_RS08470	COG4251	negative regulation of phosphorylation
CDIF29020_RS08485	COG0095	Lipoate-protein ligase
CDIF29020_RS08490	COG1757	Na H antiporter
CDIF29020_RS08500	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CDIF29020_RS08505	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CDIF29020_RS08510	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CDIF29020_RS08515	COG3123	guanosine phosphorylase activity
CDIF29020_RS08555	COG1396	sequence-specific DNA binding
CDIF29020_RS08565	COG0584	glycerophosphoryl diester phosphodiesterase
CDIF29020_RS08580	COG1131	(ABC) transporter
CDIF29020_RS08590	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS08595	COG2205	protein histidine kinase activity
CDIF29020_RS08610	COG1733	regulation of RNA biosynthetic process
CDIF29020_RS08615	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CDIF29020_RS08640	COG1309	transcriptional regulator
CDIF29020_RS08675	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS08680	COG5002	protein histidine kinase activity
CDIF29020_RS08685	COG3118	belongs to the thioredoxin family
CDIF29020_RS08715	COG1115	amino acid carrier protein
CDIF29020_RS08730	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CDIF29020_RS08730	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CDIF29020_RS08745	COG0514	ATP-dependent DNA helicase (RecQ)
CDIF29020_RS08750	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CDIF29020_RS08765	COG2022	thiamine diphosphate biosynthetic process
CDIF29020_RS08780	COG1288	antiporter activity
CDIF29020_RS08800	COG0393	Putative heavy-metal-binding
CDIF29020_RS08805	COG0521	Mo-molybdopterin cofactor biosynthetic process
CDIF29020_RS08815	COG0315	cyclic pyranopterin monophosphate synthase activity
CDIF29020_RS08940	COG0741	lytic transglycosylase activity
CDIF29020_RS08940	COG0791	NLP P60 protein
CDIF29020_RS08970	COG2946	Replication initiation factor
CDIF29020_RS08980	COG1674	ftsk spoiiie
CDIF29020_RS09015	COG1283	sodium-dependent phosphate transmembrane transporter activity
CDIF29020_RS09020	COG2207	Transcriptional regulator
CDIF29020_RS09025	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
CDIF29020_RS09085	COG5012	cobalamin binding
CDIF29020_RS09090	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CDIF29020_RS09100	COG1011	Hydrolase
CDIF29020_RS09105	COG1396	sequence-specific DNA binding
CDIF29020_RS09105	COG1917	Cupin 2, conserved barrel domain protein
CDIF29020_RS09110	COG2610	gluconate transmembrane transporter activity
CDIF29020_RS09115	COG5002	protein histidine kinase activity
CDIF29020_RS09120	COG2204	response regulator
CDIF29020_RS09155	COG0786	glutamate:sodium symporter activity
CDIF29020_RS09190	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CDIF29020_RS09195	COG1924	4 iron, 4 sulfur cluster binding
CDIF29020_RS09210	COG1309	transcriptional regulator
CDIF29020_RS09235	COG0242	peptide deformylase activity
CDIF29020_RS09270	COG3326	Membrane
CDIF29020_RS09285	COG0494	nUDIX hydrolase
CDIF29020_RS09335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CDIF29020_RS09340	COG0765	amino acid transport
CDIF29020_RS09350	COG1393	Belongs to the ArsC family
CDIF29020_RS09360	COG1606	tRNA processing
CDIF29020_RS09365	COG0116	Belongs to the methyltransferase superfamily
CDIF29020_RS09380	COG3850	Histidine kinase
CDIF29020_RS09380	COG5002	protein histidine kinase activity
CDIF29020_RS09390	COG0137	argininosuccinate synthase activity
CDIF29020_RS09400	COG0789	Transcriptional regulator
CDIF29020_RS09410	COG2323	membrane
CDIF29020_RS09425	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CDIF29020_RS09450	COG0446	pyridine nucleotide-disulphide oxidoreductase
CDIF29020_RS09455	COG0583	DNA-binding transcription factor activity
CDIF29020_RS09470	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CDIF29020_RS09480	COG1609	Transcriptional regulator
CDIF29020_RS09490	COG1621	beta-fructofuranosidase activity
CDIF29020_RS09495	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDIF29020_RS09505	COG2814	Major facilitator Superfamily
CDIF29020_RS09535	COG0406	alpha-ribazole phosphatase activity
CDIF29020_RS09540	COG2081	HI0933 family
CDIF29020_RS09545	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CDIF29020_RS09550	COG0204	Acyl-transferase
CDIF29020_RS09555	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CDIF29020_RS09600	COG1674	ftsk spoiiie
CDIF29020_RS09605	COG2946	Replication initiation factor
CDIF29020_RS09620	COG1396	sequence-specific DNA binding
CDIF29020_RS09655	COG0791	NLP P60 protein
CDIF29020_RS09655	COG0741	lytic transglycosylase activity
CDIF29020_RS09670	COG1131	(ABC) transporter
CDIF29020_RS09730	COG1192	Involved in chromosome partitioning
CDIF29020_RS09780	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CDIF29020_RS09785	COG3022	response to hydroperoxide
CDIF29020_RS09800	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CDIF29020_RS09805	COG1846	Transcriptional regulator
CDIF29020_RS09810	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CDIF29020_RS09815	COG2205	protein histidine kinase activity
CDIF29020_RS09825	COG0598	Magnesium transport protein CorA
CDIF29020_RS09835	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CDIF29020_RS09840	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CDIF29020_RS09845	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CDIF29020_RS09850	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CDIF29020_RS09855	COG1605	Chorismate mutase
CDIF29020_RS09855	COG0077	Prephenate dehydratase
CDIF29020_RS09860	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CDIF29020_RS09870	COG0287	Prephenate dehydrogenase
CDIF29020_RS09880	COG5001	Diguanylate cyclase
CDIF29020_RS09880	COG5002	protein histidine kinase activity
CDIF29020_RS09900	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CDIF29020_RS09905	COG2226	methyltransferase
CDIF29020_RS09910	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
CDIF29020_RS09940	COG2131	deaminase
CDIF29020_RS09995	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CDIF29020_RS10000	COG0582	viral genome integration into host DNA
CDIF29020_RS10005	COG1192	Involved in chromosome partitioning
CDIF29020_RS10010	COG1475	DNA binding
CDIF29020_RS10045	COG1484	DNA-dependent DNA replication
CDIF29020_RS10095	COG1388	LysM domain
CDIF29020_RS10095	COG0791	NLP P60 protein
CDIF29020_RS10135	COG2003	Belongs to the UPF0758 family
CDIF29020_RS10145	COG0517	IMP dehydrogenase activity
CDIF29020_RS10150	COG4974	Belongs to the 'phage' integrase family
CDIF29020_RS10155	COG0488	(ABC) transporter
CDIF29020_RS10160	COG4509	Sortase family
CDIF29020_RS10200	COG0596	Alpha beta hydrolase
CDIF29020_RS10245	COG0358	DNA primase activity
CDIF29020_RS10355	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CDIF29020_RS10355	COG0551	DNA topoisomerase type I activity
CDIF29020_RS10375	COG3843	relaxase mobilization nuclease domain protein
CDIF29020_RS10395	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CDIF29020_RS10405	COG3843	relaxase mobilization nuclease domain protein
CDIF29020_RS10415	COG2315	Protein conserved in bacteria
CDIF29020_RS10440	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CDIF29020_RS10445	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CDIF29020_RS10520	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CDIF29020_RS10565	COG4819	ethanolamine utilization protein
CDIF29020_RS10570	COG4303	Ethanolamine ammonia lyase large subunit
CDIF29020_RS10575	COG4302	ethanolamine ammonia-lyase activity
CDIF29020_RS10590	COG1012	belongs to the aldehyde dehydrogenase family
CDIF29020_RS10590	COG1454	alcohol dehydrogenase
CDIF29020_RS10605	COG4869	propanediol catabolic process
CDIF29020_RS10615	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CDIF29020_RS10625	COG3192	ethanolamine utilization protein
CDIF29020_RS10630	COG4766	ethanolamine catabolic process
CDIF29020_RS10650	COG1116	anion transmembrane transporter activity
CDIF29020_RS10670	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CDIF29020_RS10675	COG4974	Belongs to the 'phage' integrase family
CDIF29020_RS10690	COG2359	stage V sporulation protein S
CDIF29020_RS10695	COG0825	malonyl-CoA metabolic process
CDIF29020_RS10700	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CDIF29020_RS10705	COG0439	Biotin carboxylase
CDIF29020_RS10710	COG0511	ligase activity, forming carbon-carbon bonds
CDIF29020_RS10730	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CDIF29020_RS10740	COG1136	(ABC) transporter
CDIF29020_RS10750	COG2205	protein histidine kinase activity
CDIF29020_RS10755	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CDIF29020_RS10760	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CDIF29020_RS10780	COG1136	(ABC) transporter
CDIF29020_RS10780	COG0577	efflux transmembrane transporter activity
CDIF29020_RS10785	COG2205	protein histidine kinase activity
CDIF29020_RS10790	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS10800	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS10805	COG5002	protein histidine kinase activity
CDIF29020_RS10810	COG1136	(ABC) transporter
CDIF29020_RS10810	COG0577	efflux transmembrane transporter activity
CDIF29020_RS10820	COG2264	protein methyltransferase activity
CDIF29020_RS10850	COG1811	Na channel or pump
CDIF29020_RS10855	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
CDIF29020_RS10870	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDIF29020_RS10875	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CDIF29020_RS10880	COG1923	regulation of RNA biosynthetic process
CDIF29020_RS10885	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CDIF29020_RS10890	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CDIF29020_RS10895	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CDIF29020_RS10900	COG1116	anion transmembrane transporter activity
CDIF29020_RS10905	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CDIF29020_RS10910	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CDIF29020_RS10930	COG1733	regulation of RNA biosynthetic process
CDIF29020_RS10935	COG0384	phenazine biosynthesis protein PhzF
CDIF29020_RS10940	COG0494	nUDIX hydrolase
CDIF29020_RS10955	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CDIF29020_RS10960	COG2247	cell wall binding repeat
CDIF29020_RS10960	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS11110	COG0730	response to heat
CDIF29020_RS11115	COG2207	Transcriptional regulator
CDIF29020_RS11120	COG1321	iron dependent repressor
CDIF29020_RS11125	COG0789	Transcriptional regulator
CDIF29020_RS11140	COG1404	Belongs to the peptidase S8 family
CDIF29020_RS11155	COG0129	dihydroxy-acid dehydratase activity
CDIF29020_RS11185	COG2207	Transcriptional regulator
CDIF29020_RS11190	COG2814	Major facilitator Superfamily
CDIF29020_RS11210	COG1725	Transcriptional regulator
CDIF29020_RS11235	COG1794	racemase activity, acting on amino acids and derivatives
CDIF29020_RS11245	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CDIF29020_RS11250	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CDIF29020_RS11255	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CDIF29020_RS11260	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CDIF29020_RS11270	COG0456	acetyltransferase
CDIF29020_RS11280	COG1309	transcriptional regulator
CDIF29020_RS11300	COG3655	Transcriptional regulator
CDIF29020_RS11325	COG1737	Transcriptional regulator
CDIF29020_RS11330	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CDIF29020_RS11335	COG1187	pseudouridine synthase activity
CDIF29020_RS11340	COG0628	permease
CDIF29020_RS11350	COG0019	diaminopimelate decarboxylase activity
CDIF29020_RS11355	COG0527	aspartate kinase activity
CDIF29020_RS11385	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CDIF29020_RS11390	COG1597	lipid kinase activity
CDIF29020_RS11420	COG0582	viral genome integration into host DNA
CDIF29020_RS11430	COG0488	(ABC) transporter
CDIF29020_RS11445	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CDIF29020_RS11455	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CDIF29020_RS11455	COG2080	2 iron, 2 sulfur cluster binding
CDIF29020_RS11465	COG2233	PERMEase
CDIF29020_RS11480	COG0167	dihydroorotate dehydrogenase activity
CDIF29020_RS11485	COG0402	S-adenosylhomocysteine deaminase activity
CDIF29020_RS11505	COG0402	S-adenosylhomocysteine deaminase activity
CDIF29020_RS11530	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CDIF29020_RS11555	COG3829	transcription factor binding
CDIF29020_RS11565	COG1401	restriction endodeoxyribonuclease activity
CDIF29020_RS11580	COG4708	membrane
CDIF29020_RS11590	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CDIF29020_RS11590	COG2080	2 iron, 2 sulfur cluster binding
CDIF29020_RS11625	COG1131	(ABC) transporter
CDIF29020_RS11635	COG2252	PERMEase
CDIF29020_RS11640	COG0534	Mate efflux family protein
CDIF29020_RS11650	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CDIF29020_RS11655	COG1349	DNA-binding transcription factor activity
CDIF29020_RS11665	COG5002	protein histidine kinase activity
CDIF29020_RS11670	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS11675	COG2217	Heavy metal translocating P-type atpase
CDIF29020_RS11690	COG1217	gtp-binding protein TYPA
CDIF29020_RS11695	COG0492	ferredoxin-NADP+ reductase activity
CDIF29020_RS11735	COG1247	-acetyltransferase
CDIF29020_RS11760	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CDIF29020_RS11765	COG0750	zinc metalloprotease
CDIF29020_RS11770	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CDIF29020_RS11780	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CDIF29020_RS11785	COG1518	maintenance of DNA repeat elements
CDIF29020_RS11850	COG4589	Belongs to the CDS family
CDIF29020_RS11865	COG0233	cytoplasmic translational termination
CDIF29020_RS11870	COG0528	UMP kinase activity
CDIF29020_RS11875	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CDIF29020_RS11880	COG0052	Belongs to the universal ribosomal protein uS2 family
CDIF29020_RS11885	COG1686	Belongs to the peptidase S11 family
CDIF29020_RS11905	COG1193	negative regulation of DNA recombination
CDIF29020_RS11920	COG2720	vancomycin resistance protein
CDIF29020_RS11940	COG1363	Peptidase, m42
CDIF29020_RS11950	COG1160	GTP binding
CDIF29020_RS11955	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CDIF29020_RS11995	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CDIF29020_RS12010	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CDIF29020_RS12010	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CDIF29020_RS12020	COG1151	hydroxylamine reductase activity
CDIF29020_RS12040	COG1126	abc transporter atp-binding protein
CDIF29020_RS12065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CDIF29020_RS12070	COG0437	4 iron, 4 sulfur cluster binding
CDIF29020_RS12075	COG0243	molybdopterin cofactor binding
CDIF29020_RS12080	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CDIF29020_RS12085	COG0596	Alpha beta hydrolase
CDIF29020_RS12110	COG1705	Flagellar rod assembly protein muramidase FlgJ
CDIF29020_RS12115	COG1554	hydrolase, family 65, central catalytic
CDIF29020_RS12120	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CDIF29020_RS12145	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CDIF29020_RS12165	COG1528	Iron-storage protein
CDIF29020_RS12185	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CDIF29020_RS12185	COG0674	pyruvate-flavodoxin oxidoreductase activity
CDIF29020_RS12195	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CDIF29020_RS12210	COG1309	transcriptional regulator
CDIF29020_RS12215	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CDIF29020_RS12220	COG0628	permease
CDIF29020_RS12225	COG1012	belongs to the aldehyde dehydrogenase family
CDIF29020_RS12240	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CDIF29020_RS12245	COG1132	(ABC) transporter
CDIF29020_RS12265	COG0288	reversible hydration of carbon dioxide
CDIF29020_RS12285	COG0710	3-dehydroquinate dehydratase activity
CDIF29020_RS12295	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CDIF29020_RS12355	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CDIF29020_RS12360	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDIF29020_RS12365	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
CDIF29020_RS12380	COG4251	negative regulation of phosphorylation
CDIF29020_RS12380	COG3706	GGDEF domain
CDIF29020_RS12380	COG2203	Gaf domain
CDIF29020_RS12380	COG5001	Diguanylate cyclase
CDIF29020_RS12385	COG0017	Asparaginyl-tRNA synthetase
CDIF29020_RS12400	COG1404	Belongs to the peptidase S8 family
CDIF29020_RS12410	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CDIF29020_RS12425	COG1509	lysine 2,3-aminomutase activity
CDIF29020_RS12455	COG0662	Cupin 2, conserved barrel domain protein
CDIF29020_RS12460	COG3104	oligopeptide transport
CDIF29020_RS12465	COG0006	proline dipeptidase activity
CDIF29020_RS12470	COG3104	oligopeptide transport
CDIF29020_RS12475	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDIF29020_RS12490	COG0723	plastoquinol--plastocyanin reductase activity
CDIF29020_RS12490	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CDIF29020_RS12500	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS12500	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS12500	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS12505	COG1105	Belongs to the carbohydrate kinase PfkB family
CDIF29020_RS12510	COG3711	transcriptional antiterminator
CDIF29020_RS12510	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS12515	COG2365	Tyrosine phosphatase family
CDIF29020_RS12535	COG1115	amino acid carrier protein
CDIF29020_RS12540	COG0235	Class ii aldolase
CDIF29020_RS12545	COG0235	Class ii aldolase
CDIF29020_RS12550	COG1063	alcohol dehydrogenase
CDIF29020_RS12555	COG3775	system Galactitol-specific IIC component
CDIF29020_RS12560	COG3414	Phosphotransferase system galactitol-specific IIB component
CDIF29020_RS12565	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS12565	COG2213	PTS system mannitol-specific
CDIF29020_RS12570	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS12570	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS12590	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS12595	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CDIF29020_RS12605	COG5002	protein histidine kinase activity
CDIF29020_RS12665	COG3620	sequence-specific DNA binding
CDIF29020_RS12715	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDIF29020_RS12720	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CDIF29020_RS12725	COG0698	ribose 5-phosphate isomerase
CDIF29020_RS12730	COG3958	Transketolase
CDIF29020_RS12735	COG3959	Transketolase, thiamine diphosphate binding domain
CDIF29020_RS12745	COG1063	alcohol dehydrogenase
CDIF29020_RS12750	COG3775	system Galactitol-specific IIC component
CDIF29020_RS12755	COG3414	Phosphotransferase system galactitol-specific IIB component
CDIF29020_RS12765	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CDIF29020_RS12765	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CDIF29020_RS12770	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CDIF29020_RS12775	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CDIF29020_RS12780	COG0246	Mannitol dehydrogenase
CDIF29020_RS12785	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS12790	COG3711	transcriptional antiterminator
CDIF29020_RS12800	COG0517	IMP dehydrogenase activity
CDIF29020_RS12800	COG0516	GMP reductase activity
CDIF29020_RS12805	COG3853	Toxic anion resistance protein (TelA)
CDIF29020_RS12815	COG1454	alcohol dehydrogenase
CDIF29020_RS12820	COG0427	acetyl-CoA hydrolase
CDIF29020_RS12835	COG1012	belongs to the aldehyde dehydrogenase family
CDIF29020_RS12840	COG0427	acetyl-CoA hydrolase
CDIF29020_RS12845	COG2985	domain, Protein
CDIF29020_RS12845	COG2985	domain, Protein
CDIF29020_RS12845	COG0490	domain, Protein
CDIF29020_RS12845	COG0490	domain, Protein
CDIF29020_RS12850	COG0583	DNA-binding transcription factor activity
CDIF29020_RS12860	COG0006	proline dipeptidase activity
CDIF29020_RS12890	COG3118	belongs to the thioredoxin family
CDIF29020_RS12910	COG0561	phosphatase activity
CDIF29020_RS12925	COG1116	anion transmembrane transporter activity
CDIF29020_RS12935	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CDIF29020_RS12975	COG0157	Belongs to the NadC ModD family
CDIF29020_RS12985	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CDIF29020_RS12990	COG1966	Carbon starvation protein
CDIF29020_RS13005	COG0628	permease
CDIF29020_RS13015	COG2364	Membrane
CDIF29020_RS13020	COG3426	butyrate kinase activity
CDIF29020_RS13045	COG2199	diguanylate cyclase activity
CDIF29020_RS13050	COG2199	diguanylate cyclase activity
CDIF29020_RS13050	COG2203	Gaf domain
CDIF29020_RS13110	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CDIF29020_RS13110	COG0072	phenylalanine-tRNA ligase activity
CDIF29020_RS13115	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CDIF29020_RS13120	COG2176	DNA-directed DNA polymerase activity
CDIF29020_RS13140	COG0037	tRNA processing
CDIF29020_RS13155	COG3546	catalase activity
CDIF29020_RS13160	COG3103	Sh3 type 3 domain protein
CDIF29020_RS13160	COG1388	LysM domain
CDIF29020_RS13160	COG0791	NLP P60 protein
CDIF29020_RS13170	COG0551	DNA topoisomerase type I activity
CDIF29020_RS13170	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CDIF29020_RS13200	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CDIF29020_RS13200	COG0574	Belongs to the PEP-utilizing enzyme family
CDIF29020_RS13205	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CDIF29020_RS13210	COG0517	IMP dehydrogenase activity
CDIF29020_RS13230	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS13230	COG3711	transcriptional antiterminator
CDIF29020_RS13235	COG3732	PTS system glucitol sorbitol-specific
CDIF29020_RS13245	COG2207	Transcriptional regulator
CDIF29020_RS13255	COG1288	antiporter activity
CDIF29020_RS13265	COG1115	amino acid carrier protein
CDIF29020_RS13270	COG2223	nitrite transmembrane transporter activity
CDIF29020_RS13275	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS13280	COG0280	phosphate acetyltransferase
CDIF29020_RS13300	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CDIF29020_RS13300	COG0674	pyruvate-flavodoxin oxidoreductase activity
CDIF29020_RS13310	COG1414	Transcriptional regulator
CDIF29020_RS13320	COG0751	glycine-tRNA ligase activity
CDIF29020_RS13325	COG0752	glycyl-tRNA synthetase alpha subunit
CDIF29020_RS13335	COG1381	Involved in DNA repair and RecF pathway recombination
CDIF29020_RS13345	COG2239	Acts as a magnesium transporter
CDIF29020_RS13350	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CDIF29020_RS13355	COG0295	cytidine deaminase activity
CDIF29020_RS13360	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CDIF29020_RS13365	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CDIF29020_RS13370	COG1702	phosphate starvation-inducible protein PhoH
CDIF29020_RS13385	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CDIF29020_RS13390	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
CDIF29020_RS13395	COG1610	YqeY-like protein
CDIF29020_RS13400	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CDIF29020_RS13405	COG0537	adenosine 5'-monophosphoramidase activity
CDIF29020_RS13410	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CDIF29020_RS13415	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CDIF29020_RS13420	COG2264	protein methyltransferase activity
CDIF29020_RS13450	COG3842	ATPase activity
CDIF29020_RS13455	COG2508	Transcriptional regulator
CDIF29020_RS13460	COG0477	Major facilitator Superfamily
CDIF29020_RS13475	COG0484	heat shock protein binding
CDIF29020_RS13480	COG0443	Heat shock 70 kDa protein
CDIF29020_RS13485	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CDIF29020_RS13490	COG1420	regulation of RNA biosynthetic process
CDIF29020_RS13495	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CDIF29020_RS13500	COG0531	amino acid
CDIF29020_RS13505	COG0617	tRNA 3'-terminal CCA addition
CDIF29020_RS13510	COG0481	GTPase activity
CDIF29020_RS13535	COG0268	Binds directly to 16S ribosomal RNA
CDIF29020_RS13545	COG2333	competence protein COMEC
CDIF29020_RS13545	COG0658	competence protein
CDIF29020_RS13560	COG2333	competence protein COMEC
CDIF29020_RS13560	COG0658	competence protein
CDIF29020_RS13565	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CDIF29020_RS13570	COG3584	3D domain protein
CDIF29020_RS13570	COG1388	LysM domain
CDIF29020_RS13575	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CDIF29020_RS13595	COG1396	sequence-specific DNA binding
CDIF29020_RS13600	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CDIF29020_RS13605	COG0006	proline dipeptidase activity
CDIF29020_RS13610	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS13615	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS13625	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS13625	COG3711	transcriptional antiterminator
CDIF29020_RS13630	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDIF29020_RS13635	COG1482	cell wall glycoprotein biosynthetic process
CDIF29020_RS13640	COG5002	protein histidine kinase activity
CDIF29020_RS13665	COG1686	Belongs to the peptidase S11 family
CDIF29020_RS13675	COG0165	Argininosuccinate lyase
CDIF29020_RS13680	COG0561	phosphatase activity
CDIF29020_RS13685	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CDIF29020_RS13690	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CDIF29020_RS13695	COG1876	peptidase activity
CDIF29020_RS13700	COG1309	transcriptional regulator
CDIF29020_RS13705	COG2814	Major facilitator Superfamily
CDIF29020_RS13725	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS13725	COG1263	PTS System
CDIF29020_RS13730	COG3711	transcriptional antiterminator
CDIF29020_RS13735	COG2190	(PTS) system
CDIF29020_RS13735	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS13735	COG1263	PTS System
CDIF29020_RS13740	COG0251	oxidation-reduction process
CDIF29020_RS13745	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CDIF29020_RS13790	COG0495	leucyl-tRNA aminoacylation
CDIF29020_RS13795	COG0799	negative regulation of ribosome biogenesis
CDIF29020_RS13800	COG1713	HD superfamily hydrolase involved in NAD metabolism
CDIF29020_RS13805	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CDIF29020_RS13810	COG2137	regulation of response to DNA damage stimulus
CDIF29020_RS13815	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CDIF29020_RS13820	COG1309	transcriptional regulator
CDIF29020_RS13870	COG0577	efflux transmembrane transporter activity
CDIF29020_RS13870	COG1136	(ABC) transporter
CDIF29020_RS13880	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS13885	COG0737	Belongs to the 5'-nucleotidase family
CDIF29020_RS13895	COG1234	tRNA 3'-trailer cleavage
CDIF29020_RS13900	COG0446	pyridine nucleotide-disulphide oxidoreductase
CDIF29020_RS13905	COG1823	symporter activity
CDIF29020_RS13930	COG4124	Belongs to the glycosyl hydrolase 26 family
CDIF29020_RS13930	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CDIF29020_RS13950	COG0395	ABC-type sugar transport system, permease component
CDIF29020_RS13975	COG0742	ribosomal rna small subunit methyltransferase
CDIF29020_RS13980	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CDIF29020_RS13985	COG1461	Dihydroxyacetone kinase
CDIF29020_RS13990	COG1302	Protein conserved in bacteria
CDIF29020_RS13995	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CDIF29020_RS14010	COG0789	Transcriptional regulator
CDIF29020_RS14015	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS14015	COG3711	transcriptional antiterminator
CDIF29020_RS14020	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS14020	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS14020	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS14025	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS14025	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS14025	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS14030	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS14035	COG0383	alpha-mannosidase activity
CDIF29020_RS14040	COG5002	protein histidine kinase activity
CDIF29020_RS14060	COG1564	THIamine pyrophosphokinase
CDIF29020_RS14065	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CDIF29020_RS14070	COG1162	GTPase activity
CDIF29020_RS14075	COG1028	Short-chain dehydrogenase reductase Sdr
CDIF29020_RS14080	COG0515	serine threonine protein kinase
CDIF29020_RS14080	COG2815	serine threonine protein kinase
CDIF29020_RS14090	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CDIF29020_RS14095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CDIF29020_RS14095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CDIF29020_RS14100	COG2738	Putative neutral zinc metallopeptidase
CDIF29020_RS14110	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CDIF29020_RS14115	COG0242	peptide deformylase activity
CDIF29020_RS14120	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CDIF29020_RS14125	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CDIF29020_RS14130	COG1758	RNA polymerase activity
CDIF29020_RS14135	COG0194	GDP metabolic process
CDIF29020_RS14140	COG1561	YicC-like family, N-terminal region
CDIF29020_RS14145	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CDIF29020_RS14155	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CDIF29020_RS14160	COG0488	(ABC) transporter
CDIF29020_RS14170	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CDIF29020_RS14175	COG0564	pseudouridine synthase activity
CDIF29020_RS14180	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CDIF29020_RS14190	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CDIF29020_RS14195	COG1966	Carbon starvation protein
CDIF29020_RS14200	COG3279	Response regulator of the LytR AlgR family
CDIF29020_RS14205	COG3275	phosphorelay sensor kinase activity
CDIF29020_RS14230	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CDIF29020_RS14235	COG0531	amino acid
CDIF29020_RS14240	COG0006	proline dipeptidase activity
CDIF29020_RS14245	COG1307	EDD domain protein, DegV family
CDIF29020_RS14260	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CDIF29020_RS14265	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CDIF29020_RS14275	COG2302	S4 RNA-binding domain
CDIF29020_RS14285	COG1799	cell septum assembly
CDIF29020_RS14290	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CDIF29020_RS14310	COG3830	Belongs to the UPF0237 family
CDIF29020_RS14320	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CDIF29020_RS14335	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CDIF29020_RS14340	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CDIF29020_RS14345	COG1160	GTP binding
CDIF29020_RS14370	COG5002	protein histidine kinase activity
CDIF29020_RS14375	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS14385	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CDIF29020_RS14390	COG1873	PFAM PRC-barrel domain
CDIF29020_RS14395	COG1191	sigma factor activity
CDIF29020_RS14400	COG1191	sigma factor activity
CDIF29020_RS14415	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CDIF29020_RS14420	COG3856	small basic protein
CDIF29020_RS14440	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CDIF29020_RS14445	COG0772	Belongs to the SEDS family
CDIF29020_RS14450	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CDIF29020_RS14455	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CDIF29020_RS14460	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CDIF29020_RS14465	COG0768	penicillin binding
CDIF29020_RS14475	COG0275	rRNA processing
CDIF29020_RS14480	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CDIF29020_RS14485	COG0612	Peptidase, M16
CDIF29020_RS14495	COG0012	GTP binding
CDIF29020_RS14500	COG5001	Diguanylate cyclase
CDIF29020_RS14500	COG3300	MHYT domain
CDIF29020_RS14505	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CDIF29020_RS14515	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS14515	COG2190	(PTS) system
CDIF29020_RS14515	COG1263	PTS System
CDIF29020_RS14520	COG3711	transcriptional antiterminator
CDIF29020_RS14525	COG0025	NhaP-type Na H and K H
CDIF29020_RS14530	COG4608	Belongs to the ABC transporter superfamily
CDIF29020_RS14535	COG0444	Belongs to the ABC transporter superfamily
CDIF29020_RS14545	COG0601	transmembrane transport
CDIF29020_RS14550	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CDIF29020_RS14555	COG0583	DNA-binding transcription factor activity
CDIF29020_RS14560	COG0183	Belongs to the thiolase family
CDIF29020_RS14565	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CDIF29020_RS14575	COG1028	Short-chain dehydrogenase reductase Sdr
CDIF29020_RS14580	COG2610	gluconate transmembrane transporter activity
CDIF29020_RS14585	COG2340	Cysteine-rich secretory protein family
CDIF29020_RS14595	COG4869	propanediol catabolic process
CDIF29020_RS14630	COG2081	HI0933 family
CDIF29020_RS14635	COG0671	phosphoesterase, PA-phosphatase related
CDIF29020_RS14645	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CDIF29020_RS14680	COG1388	LysM domain
CDIF29020_RS14680	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS14700	COG2502	aspartate--ammonia ligase
CDIF29020_RS14705	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CDIF29020_RS14820	COG2946	Replication initiation factor
CDIF29020_RS14830	COG1674	ftsk spoiiie
CDIF29020_RS14865	COG2252	PERMEase
CDIF29020_RS14870	COG0402	S-adenosylhomocysteine deaminase activity
CDIF29020_RS14880	COG2271	Major facilitator Superfamily
CDIF29020_RS14900	COG0583	DNA-binding transcription factor activity
CDIF29020_RS14910	COG1376	ErfK ybiS ycfS ynhG family protein
CDIF29020_RS14915	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CDIF29020_RS14920	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CDIF29020_RS14945	COG4509	Sortase family
CDIF29020_RS14965	COG0726	polysaccharide deacetylase
CDIF29020_RS14970	COG3069	C4-dicarboxylate transmembrane transporter activity
CDIF29020_RS14975	COG0642	Histidine kinase
CDIF29020_RS14975	COG5002	protein histidine kinase activity
CDIF29020_RS14980	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS14995	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CDIF29020_RS15000	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CDIF29020_RS15020	COG1937	Protein conserved in bacteria
CDIF29020_RS15055	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CDIF29020_RS15060	COG1757	Na H antiporter
CDIF29020_RS15070	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15070	COG2247	cell wall binding repeat
CDIF29020_RS15075	COG0583	DNA-binding transcription factor activity
CDIF29020_RS15080	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CDIF29020_RS15090	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CDIF29020_RS15095	COG0124	histidyl-tRNA synthetase
CDIF29020_RS15100	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CDIF29020_RS15105	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDIF29020_RS15110	COG1490	D-aminoacyl-tRNA deacylase activity
CDIF29020_RS15115	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CDIF29020_RS15120	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CDIF29020_RS15125	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CDIF29020_RS15125	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CDIF29020_RS15170	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS15195	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15200	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CDIF29020_RS15210	COG0561	phosphatase activity
CDIF29020_RS15215	COG1316	TRANSCRIPTIONal
CDIF29020_RS15220	COG1316	TRANSCRIPTIONal
CDIF29020_RS15225	COG1649	PFAM Uncharacterised BCR, COG1649
CDIF29020_RS15230	COG0791	NLP P60 protein
CDIF29020_RS15240	COG0438	transferase activity, transferring glycosyl groups
CDIF29020_RS15245	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
CDIF29020_RS15250	COG1215	transferase activity, transferring glycosyl groups
CDIF29020_RS15260	COG1215	transferase activity, transferring glycosyl groups
CDIF29020_RS15265	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CDIF29020_RS15265	COG1215	transferase activity, transferring glycosyl groups
CDIF29020_RS15270	COG1216	Glycosyl transferase, family 2
CDIF29020_RS15290	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDIF29020_RS15295	COG0728	peptidoglycan biosynthetic process
CDIF29020_RS15300	COG2247	cell wall binding repeat
CDIF29020_RS15300	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15305	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CDIF29020_RS15310	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15325	COG2247	cell wall binding repeat
CDIF29020_RS15325	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15335	COG2246	polysaccharide biosynthetic process
CDIF29020_RS15340	COG2247	cell wall binding repeat
CDIF29020_RS15340	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15355	COG0653	protein targeting
CDIF29020_RS15380	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS15380	COG2247	cell wall binding repeat
CDIF29020_RS15400	COG0343	queuine tRNA-ribosyltransferase activity
CDIF29020_RS15410	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CDIF29020_RS15415	COG2255	four-way junction helicase activity
CDIF29020_RS15420	COG0632	four-way junction helicase activity
CDIF29020_RS15425	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CDIF29020_RS15465	COG2610	gluconate transmembrane transporter activity
CDIF29020_RS15470	COG2084	Dehydrogenase
CDIF29020_RS15490	COG1132	(ABC) transporter
CDIF29020_RS15535	COG0436	Aminotransferase
CDIF29020_RS15540	COG0697	spore germination
CDIF29020_RS15555	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CDIF29020_RS15570	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CDIF29020_RS15575	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CDIF29020_RS15580	COG1473	amidohydrolase
CDIF29020_RS15585	COG3949	Membrane
CDIF29020_RS15600	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CDIF29020_RS15615	COG0604	alcohol dehydrogenase
CDIF29020_RS15625	COG1592	Rubrerythrin
CDIF29020_RS15630	COG0789	Transcriptional regulator
CDIF29020_RS15640	COG1664	Polymer-forming cytoskeletal
CDIF29020_RS15645	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CDIF29020_RS15645	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CDIF29020_RS15650	COG1349	DNA-binding transcription factor activity
CDIF29020_RS15655	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CDIF29020_RS15660	COG1696	Membrane protein involved in D-alanine export
CDIF29020_RS15665	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CDIF29020_RS15675	COG0673	inositol 2-dehydrogenase activity
CDIF29020_RS15685	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CDIF29020_RS15690	COG1253	flavin adenine dinucleotide binding
CDIF29020_RS15695	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CDIF29020_RS15715	COG3290	protein histidine kinase activity
CDIF29020_RS15715	COG3829	transcription factor binding
CDIF29020_RS15720	COG2267	carboxylic ester hydrolase activity
CDIF29020_RS15730	COG0312	modulator of DNA gyrase
CDIF29020_RS15735	COG0312	modulator of DNA gyrase
CDIF29020_RS15775	COG1120	ATPase activity
CDIF29020_RS15780	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CDIF29020_RS15785	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CDIF29020_RS15800	COG1447	Phosphotransferase system cellobiose-specific component IIA
CDIF29020_RS15805	COG3394	polysaccharide catabolic process
CDIF29020_RS15810	COG1486	melibiose metabolic process
CDIF29020_RS15815	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS15825	COG2188	Transcriptional regulator
CDIF29020_RS15830	COG0366	Alpha amylase catalytic
CDIF29020_RS15835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS15835	COG1263	PTS System
CDIF29020_RS15845	COG2188	Transcriptional regulator
CDIF29020_RS15850	COG1178	ABC-type Fe3 transport system permease component
CDIF29020_RS15855	COG3842	ATPase activity
CDIF29020_RS15860	COG1840	ABC-type Fe3 transport system, periplasmic component
CDIF29020_RS15865	COG1394	ATPase activity, coupled to movement of substances
CDIF29020_RS15870	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
CDIF29020_RS15875	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
CDIF29020_RS15890	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
CDIF29020_RS15895	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CDIF29020_RS15900	COG1269	ATP hydrolysis coupled proton transport
CDIF29020_RS15925	COG3300	MHYT domain
CDIF29020_RS15925	COG5001	Diguanylate cyclase
CDIF29020_RS15930	COG1012	belongs to the aldehyde dehydrogenase family
CDIF29020_RS15930	COG1454	alcohol dehydrogenase
CDIF29020_RS15940	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CDIF29020_RS15950	COG0318	PFAM AMP-dependent synthetase and ligase
CDIF29020_RS15960	COG1268	BioY protein
CDIF29020_RS15975	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CDIF29020_RS15990	COG1203	CRISPR-associated helicase, Cas3
CDIF29020_RS16020	COG0577	efflux transmembrane transporter activity
CDIF29020_RS16025	COG1136	(ABC) transporter
CDIF29020_RS16030	COG1968	undecaprenyl-diphosphatase activity
CDIF29020_RS16035	COG2205	protein histidine kinase activity
CDIF29020_RS16040	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS16055	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CDIF29020_RS16080	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CDIF29020_RS16085	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CDIF29020_RS16095	COG1120	ATPase activity
CDIF29020_RS16100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CDIF29020_RS16110	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDIF29020_RS16115	COG0179	Fumarylacetoacetate (FAA) hydrolase
CDIF29020_RS16140	COG1454	alcohol dehydrogenase
CDIF29020_RS16145	COG1376	ErfK ybiS ycfS ynhG family protein
CDIF29020_RS16155	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CDIF29020_RS16160	COG0785	Cytochrome C biogenesis protein
CDIF29020_RS16165	COG1733	regulation of RNA biosynthetic process
CDIF29020_RS16170	COG0383	alpha-mannosidase activity
CDIF29020_RS16175	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16180	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16185	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16185	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16185	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16190	COG3711	transcriptional antiterminator
CDIF29020_RS16190	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16195	COG4975	Glucose uptake
CDIF29020_RS16215	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CDIF29020_RS16240	COG5002	protein histidine kinase activity
CDIF29020_RS16250	COG0492	ferredoxin-NADP+ reductase activity
CDIF29020_RS16255	COG3118	belongs to the thioredoxin family
CDIF29020_RS16265	COG0384	phenazine biosynthesis protein PhzF
CDIF29020_RS16285	COG0542	response to heat
CDIF29020_RS16305	COG2267	carboxylic ester hydrolase activity
CDIF29020_RS16320	COG1737	Transcriptional regulator
CDIF29020_RS16340	COG2971	BadF BadG BcrA BcrD
CDIF29020_RS16345	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
CDIF29020_RS16355	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS16370	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CDIF29020_RS16380	COG0642	Histidine kinase
CDIF29020_RS16395	COG1136	(ABC) transporter
CDIF29020_RS16405	COG2190	(PTS) system
CDIF29020_RS16420	COG1263	PTS System
CDIF29020_RS16420	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16440	COG1070	Carbohydrate kinase
CDIF29020_RS16445	COG1940	carbohydrate kinase activity
CDIF29020_RS16455	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16455	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16460	COG3716	PTS system mannose fructose sorbose family IID component
CDIF29020_RS16485	COG0366	Alpha amylase catalytic
CDIF29020_RS16490	COG0191	fructose-bisphosphate aldolase activity
CDIF29020_RS16495	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16495	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16495	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16520	COG3394	polysaccharide catabolic process
CDIF29020_RS16525	COG2190	(PTS) system
CDIF29020_RS16525	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16525	COG1263	PTS System
CDIF29020_RS16530	COG2188	Transcriptional regulator
CDIF29020_RS16535	COG0366	Alpha amylase catalytic
CDIF29020_RS16545	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CDIF29020_RS16555	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS16560	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS16565	COG2190	(PTS) system
CDIF29020_RS16565	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16565	COG1263	PTS System
CDIF29020_RS16570	COG3711	transcriptional antiterminator
CDIF29020_RS16580	COG1288	antiporter activity
CDIF29020_RS16585	COG2190	(PTS) system
CDIF29020_RS16585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16585	COG1263	PTS System
CDIF29020_RS16590	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDIF29020_RS16600	COG1132	(ABC) transporter
CDIF29020_RS16605	COG1136	(ABC) transporter
CDIF29020_RS16620	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CDIF29020_RS16630	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS16635	COG2190	(PTS) system
CDIF29020_RS16640	COG0561	phosphatase activity
CDIF29020_RS16645	COG1454	alcohol dehydrogenase
CDIF29020_RS16650	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CDIF29020_RS16655	COG3711	transcriptional antiterminator
CDIF29020_RS16655	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16660	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CDIF29020_RS16665	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CDIF29020_RS16670	COG0205	6-phosphofructokinase activity
CDIF29020_RS16695	COG1959	2 iron, 2 sulfur cluster binding
CDIF29020_RS16700	COG0778	Nitroreductase
CDIF29020_RS16705	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS16710	COG1263	PTS System
CDIF29020_RS16710	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16710	COG2190	(PTS) system
CDIF29020_RS16720	COG1136	(ABC) transporter
CDIF29020_RS16745	COG1819	glycosyl
CDIF29020_RS16750	COG3620	sequence-specific DNA binding
CDIF29020_RS16760	COG2223	nitrite transmembrane transporter activity
CDIF29020_RS16765	COG1695	Transcriptional regulator
CDIF29020_RS16775	COG0640	Transcriptional regulator
CDIF29020_RS16785	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS16790	COG2190	(PTS) system
CDIF29020_RS16790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16790	COG1263	PTS System
CDIF29020_RS16795	COG3711	transcriptional antiterminator
CDIF29020_RS16805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16805	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16810	COG3711	transcriptional antiterminator
CDIF29020_RS16815	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16815	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDIF29020_RS16815	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS16820	COG0191	fructose-bisphosphate aldolase activity
CDIF29020_RS16825	COG1178	ABC-type Fe3 transport system permease component
CDIF29020_RS16830	COG3842	ATPase activity
CDIF29020_RS16840	COG1840	ABC-type Fe3 transport system, periplasmic component
CDIF29020_RS16845	COG2723	6-phospho-beta-galactosidase activity
CDIF29020_RS16850	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS16850	COG2190	(PTS) system
CDIF29020_RS16850	COG1263	PTS System
CDIF29020_RS16855	COG3711	transcriptional antiterminator
CDIF29020_RS16880	COG0693	protein deglycase activity
CDIF29020_RS16935	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CDIF29020_RS16965	COG0557	exoribonuclease II activity
CDIF29020_RS16980	COG1881	PFAM PEBP family protein
CDIF29020_RS17010	COG0148	phosphopyruvate hydratase activity
CDIF29020_RS17015	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CDIF29020_RS17020	COG0149	triose-phosphate isomerase activity
CDIF29020_RS17025	COG0126	phosphoglycerate kinase activity
CDIF29020_RS17035	COG2390	Transcriptional regulator
CDIF29020_RS17040	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CDIF29020_RS17045	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CDIF29020_RS17055	COG0167	dihydroorotate dehydrogenase activity
CDIF29020_RS17065	COG0402	S-adenosylhomocysteine deaminase activity
CDIF29020_RS17070	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CDIF29020_RS17085	COG3829	transcription factor binding
CDIF29020_RS17090	COG0251	oxidation-reduction process
CDIF29020_RS17105	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CDIF29020_RS17110	COG0789	Transcriptional regulator
CDIF29020_RS17135	COG2247	cell wall binding repeat
CDIF29020_RS17135	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDIF29020_RS17140	COG1136	(ABC) transporter
CDIF29020_RS17145	COG0577	efflux transmembrane transporter activity
CDIF29020_RS17170	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CDIF29020_RS17180	COG0789	Transcriptional regulator
CDIF29020_RS17205	COG2205	protein histidine kinase activity
CDIF29020_RS17205	COG2770	Histidine kinase
CDIF29020_RS17210	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS17215	COG0706	membrane insertase activity
CDIF29020_RS17225	COG0778	Nitroreductase
CDIF29020_RS17235	COG0534	Mate efflux family protein
CDIF29020_RS17270	COG1732	Glycine betaine
CDIF29020_RS17275	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CDIF29020_RS17285	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CDIF29020_RS17290	COG2226	methyltransferase
CDIF29020_RS17300	COG1473	amidohydrolase
CDIF29020_RS17305	COG1760	l-serine dehydratase
CDIF29020_RS17310	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDIF29020_RS17315	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CDIF29020_RS17320	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDIF29020_RS17325	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CDIF29020_RS17330	COG2171	N-acyltransferase activity
CDIF29020_RS17340	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CDIF29020_RS17350	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CDIF29020_RS17355	COG3681	Belongs to the UPF0597 family
CDIF29020_RS17365	COG3829	transcription factor binding
CDIF29020_RS17370	COG2226	methyltransferase
CDIF29020_RS17395	COG0252	asparaginase activity
CDIF29020_RS17395	COG5275	peptidyl-tyrosine sulfation
CDIF29020_RS17400	COG5275	peptidyl-tyrosine sulfation
CDIF29020_RS17400	COG0252	asparaginase activity
CDIF29020_RS17415	COG0252	asparaginase activity
CDIF29020_RS17415	COG5275	peptidyl-tyrosine sulfation
CDIF29020_RS17435	COG4656	Part of a membrane complex involved in electron transport
CDIF29020_RS17445	COG0726	polysaccharide deacetylase
CDIF29020_RS17470	COG0285	dihydrofolate synthase activity
CDIF29020_RS17480	COG3279	Response regulator of the LytR AlgR family
CDIF29020_RS17485	COG0525	valine-tRNA ligase activity
CDIF29020_RS17495	COG0726	polysaccharide deacetylase
CDIF29020_RS17510	COG0704	Plays a role in the regulation of phosphate uptake
CDIF29020_RS17515	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CDIF29020_RS17520	COG0581	inorganic phosphate transmembrane transporter activity
CDIF29020_RS17525	COG0573	inorganic phosphate transmembrane transporter activity
CDIF29020_RS17545	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS17550	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CDIF29020_RS17555	COG1164	Oligoendopeptidase f
CDIF29020_RS17560	COG1285	pathogenesis
CDIF29020_RS17585	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CDIF29020_RS17590	COG3716	PTS system mannose fructose sorbose family IID component
CDIF29020_RS17595	COG3715	PTS system
CDIF29020_RS17600	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS17600	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS17605	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDIF29020_RS17605	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CDIF29020_RS17615	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CDIF29020_RS17630	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CDIF29020_RS17635	COG0166	Belongs to the GPI family
CDIF29020_RS17645	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
CDIF29020_RS17660	COG1405	negative regulation of cell septum assembly
CDIF29020_RS17660	COG3012	SEC-C Motif Domain Protein
CDIF29020_RS17685	COG1459	type II secretion system
CDIF29020_RS17690	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CDIF29020_RS17705	COG2814	Major facilitator Superfamily
CDIF29020_RS17710	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CDIF29020_RS17715	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CDIF29020_RS17725	COG2059	Chromate
CDIF29020_RS17730	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CDIF29020_RS17735	COG0740	serine-type endopeptidase activity
CDIF29020_RS17740	COG0544	peptidyl-prolyl cis-trans isomerase activity
CDIF29020_RS17755	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CDIF29020_RS17810	COG2946	Replication initiation factor
CDIF29020_RS17830	COG0493	'glutamate synthase
CDIF29020_RS17830	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDIF29020_RS17840	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDIF29020_RS17850	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CDIF29020_RS17910	COG0463	Glycosyl transferase, family 2
CDIF29020_RS17910	COG0457	Tetratricopeptide repeat
CDIF29020_RS17925	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS17935	COG0778	Nitroreductase
CDIF29020_RS17940	COG1733	regulation of RNA biosynthetic process
CDIF29020_RS17955	COG0488	(ABC) transporter
CDIF29020_RS17960	COG0745	RESPONSE REGULATOR receiver
CDIF29020_RS17980	COG4555	ABC transporter
CDIF29020_RS17985	COG2199	diguanylate cyclase activity
CDIF29020_RS18030	COG0205	6-phosphofructokinase activity
CDIF29020_RS18040	COG1481	regulation of sporulation
CDIF29020_RS18055	COG1660	Displays ATPase and GTPase activities
CDIF29020_RS18065	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CDIF29020_RS18070	COG2116	formate transmembrane transporter activity
CDIF29020_RS18075	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDIF29020_RS18105	COG0322	excinuclease ABC activity
CDIF29020_RS18115	COG0556	nucleotide-excision repair
CDIF29020_RS18125	COG1653	transport
CDIF29020_RS18135	COG1175	transmembrane transport
CDIF29020_RS18140	COG3842	ATPase activity
CDIF29020_RS18160	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CDIF29020_RS18160	COG1648	precorrin-2 dehydrogenase activity
CDIF29020_RS18165	COG0113	porphobilinogen synthase activity
CDIF29020_RS18175	COG0181	hydroxymethylbilane synthase activity
CDIF29020_RS18215	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
CDIF29020_RS18230	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CDIF29020_RS18240	COG1797	cobyrinic acid a,c-diamide synthase activity
CDIF29020_RS18245	COG1492	cobalamin metabolic process
CDIF29020_RS18255	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CDIF29020_RS18265	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CDIF29020_RS18285	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CDIF29020_RS18300	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS18305	COG1447	Phosphotransferase system cellobiose-specific component IIA
CDIF29020_RS18310	COG1363	Peptidase, m42
CDIF29020_RS18315	COG3711	transcriptional antiterminator
CDIF29020_RS18320	COG0191	fructose-bisphosphate aldolase activity
CDIF29020_RS18325	COG2222	sugar isomerase
CDIF29020_RS18330	COG0673	inositol 2-dehydrogenase activity
CDIF29020_RS18340	COG2188	Transcriptional regulator
CDIF29020_RS18350	COG0793	Belongs to the peptidase S41A family
CDIF29020_RS18350	COG3409	Peptidoglycan-binding domain 1 protein
CDIF29020_RS18355	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CDIF29020_RS18365	COG3949	Membrane
CDIF29020_RS18370	COG3958	Transketolase
CDIF29020_RS18375	COG3959	Transketolase, thiamine diphosphate binding domain
CDIF29020_RS18380	COG2337	Toxic component of a toxin-antitoxin (TA) module
CDIF29020_RS18400	COG0516	GMP reductase activity
CDIF29020_RS18400	COG0517	IMP dehydrogenase activity
CDIF29020_RS18405	COG0736	holo-[acyl-carrier-protein] synthase activity
CDIF29020_RS18410	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CDIF29020_RS18415	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CDIF29020_RS18420	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CDIF29020_RS18425	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CDIF29020_RS18430	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CDIF29020_RS18435	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CDIF29020_RS18440	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CDIF29020_RS18470	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CDIF29020_RS18470	COG3608	succinylglutamate desuccinylase aspartoacylase
CDIF29020_RS18475	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CDIF29020_RS18480	COG0698	ribose 5-phosphate isomerase
CDIF29020_RS18485	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CDIF29020_RS18490	COG0009	L-threonylcarbamoyladenylate synthase
CDIF29020_RS18500	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CDIF29020_RS18505	COG2890	protein-(glutamine-N5) methyltransferase activity
CDIF29020_RS18510	COG3872	metal-dependent enzyme
CDIF29020_RS18515	COG0254	rRNA binding
CDIF29020_RS18520	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CDIF29020_RS18525	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CDIF29020_RS18535	COG2208	phosphoserine phosphatase activity
CDIF29020_RS18540	COG0248	Ppx GppA phosphatase
CDIF29020_RS18560	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CDIF29020_RS18570	COG3956	TIGRFAM MazG family protein
CDIF29020_RS18575	COG2244	polysaccharide biosynthetic process
CDIF29020_RS18580	COG2002	toxin-antitoxin pair type II binding
CDIF29020_RS18585	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDIF29020_RS18590	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CDIF29020_RS18595	COG0193	aminoacyl-tRNA hydrolase activity
CDIF29020_RS18645	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CDIF29020_RS18660	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CDIF29020_RS18665	COG2088	sporulation resulting in formation of a cellular spore
CDIF29020_RS18670	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CDIF29020_RS18675	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CDIF29020_RS18685	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CDIF29020_RS18690	COG2195	Cleaves the N-terminal amino acid of tripeptides
CDIF29020_RS18700	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CDIF29020_RS18705	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CDIF29020_RS18720	COG3842	ATPase activity
CDIF29020_RS18725	COG0613	PHP domain protein
CDIF29020_RS18735	COG0084	hydrolase, TatD family'
CDIF29020_RS18740	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CDIF29020_RS18740	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CDIF29020_RS18745	COG0700	Nucleoside recognition
CDIF29020_RS18755	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CDIF29020_RS18760	COG1522	sequence-specific DNA binding
CDIF29020_RS18765	COG0617	tRNA 3'-terminal CCA addition
CDIF29020_RS18770	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CDIF29020_RS18775	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CDIF29020_RS18780	COG1774	PSP1 C-terminal conserved region
CDIF29020_RS18785	COG0470	DNA polymerase III
CDIF29020_RS18795	COG1982	Orn Lys Arg decarboxylase major
CDIF29020_RS18800	COG2155	Conserved Protein
CDIF29020_RS18825	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CDIF29020_RS18830	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CDIF29020_RS18840	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CDIF29020_RS18850	COG3191	aminopeptidase activity
CDIF29020_RS18860	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CDIF29020_RS18865	COG0037	tRNA processing
CDIF29020_RS18875	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CDIF29020_RS18890	COG1802	Transcriptional regulator
CDIF29020_RS18895	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CDIF29020_RS18925	COG0653	protein targeting
CDIF29020_RS18950	COG2223	nitrite transmembrane transporter activity
CDIF29020_RS18955	COG0626	cystathionine gamma-synthase activity
CDIF29020_RS18980	COG0564	pseudouridine synthase activity
CDIF29020_RS18985	COG4978	Transcriptional regulator
CDIF29020_RS18985	COG0789	Transcriptional regulator
CDIF29020_RS18995	COG0577	efflux transmembrane transporter activity
CDIF29020_RS18995	COG1136	(ABC) transporter
CDIF29020_RS19000	COG2205	protein histidine kinase activity
CDIF29020_RS19010	COG1695	Transcriptional regulator
CDIF29020_RS19025	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CDIF29020_RS19035	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CDIF29020_RS19045	COG0284	orotidine-5'-phosphate decarboxylase activity
CDIF29020_RS19065	COG0646	methionine synthase
CDIF29020_RS19065	COG1410	methionine synthase
CDIF29020_RS19075	COG1854	S-ribosylhomocysteine lyase activity
CDIF29020_RS19090	COG1876	peptidase activity
CDIF29020_RS19095	COG0037	tRNA processing
CDIF29020_RS19100	COG1408	metallophosphoesterase
CDIF29020_RS19115	COG1141	Ferredoxin
CDIF29020_RS19120	COG3964	amidohydrolase
CDIF29020_RS19130	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CDIF29020_RS19140	COG0346	lactoylglutathione lyase activity
CDIF29020_RS19145	COG0534	Mate efflux family protein
CDIF29020_RS19160	COG4978	Transcriptional regulator
CDIF29020_RS19160	COG0789	Transcriptional regulator
CDIF29020_RS19165	COG3263	regulation of cellular component size
CDIF29020_RS19170	COG5504	Zn-dependent protease
CDIF29020_RS19180	COG0519	Catalyzes the synthesis of GMP from XMP
CDIF29020_RS19190	COG1357	PFAM Pentapeptide repeats (8 copies)
CDIF29020_RS19195	COG2824	Alkylphosphonate utilization operon protein PhnA
CDIF29020_RS19200	COG1136	(ABC) transporter
CDIF29020_RS19200	COG0577	efflux transmembrane transporter activity
CDIF29020_RS19210	COG5002	protein histidine kinase activity
CDIF29020_RS19210	COG5001	Diguanylate cyclase
CDIF29020_RS19210	COG3447	MASE1 domain protein
CDIF29020_RS19220	COG1473	amidohydrolase
CDIF29020_RS19235	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDIF29020_RS19240	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CDIF29020_RS19240	COG0517	IMP dehydrogenase activity
CDIF29020_RS19260	COG1335	isochorismatase
CDIF29020_RS19290	COG0583	DNA-binding transcription factor activity
CDIF29020_RS19295	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDIF29020_RS19295	COG1522	sequence-specific DNA binding
CDIF29020_RS19310	COG3964	amidohydrolase
CDIF29020_RS19320	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS19325	COG2188	Transcriptional regulator
CDIF29020_RS19330	COG1447	Phosphotransferase system cellobiose-specific component IIA
CDIF29020_RS19335	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS19340	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CDIF29020_RS19345	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CDIF29020_RS19350	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CDIF29020_RS19365	COG1484	DNA-dependent DNA replication
CDIF29020_RS19390	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CDIF29020_RS19400	COG0305	Participates in initiation and elongation during chromosome replication
CDIF29020_RS19405	COG0359	binds to the 23S rRNA
CDIF29020_RS19410	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CDIF29020_RS19425	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CDIF29020_RS19430	COG0629	single-stranded DNA binding
CDIF29020_RS19435	COG0360	Binds together with S18 to 16S ribosomal RNA
CDIF29020_RS19440	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDIF29020_RS19455	COG0425	Belongs to the sulfur carrier protein TusA family
CDIF29020_RS19470	COG1104	cysteine desulfurase activity
CDIF29020_RS19475	COG1475	DNA binding
CDIF29020_RS19480	COG1192	Involved in chromosome partitioning
CDIF29020_RS19485	COG1475	DNA binding
CDIF29020_RS19490	COG0357	Ribosomal RNA small subunit methyltransferase G
CDIF29020_RS19495	COG0445	tRNA wobble uridine modification
CDIF29020_RS19500	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CDIF29020_RS19505	COG1847	R3H domain protein
CDIF29020_RS19510	COG0706	membrane insertase activity
CDIF29020_RS19515	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CDIF29020_RS19520	COG0594	ribonuclease P activity
CDIF29020_RS19525	COG0230	Belongs to the bacterial ribosomal protein bL34 family