CWR56_RS00020	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CWR56_RS00020	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CWR56_RS00025	SM00649	Ribosomal protein L11/L12
CWR56_RS00055	SM00663	RNA polymerase I subunit A N-terminus
CWR56_RS00070	SM00838	Elongation factor G C-terminus
CWR56_RS00070	SM00889	Elongation factor G, domain IV
CWR56_RS00080	SM01403	CWR56_RS00080
CWR56_RS00100	SM01382	CWR56_RS00100
CWR56_RS00100	SM01383	CWR56_RS00100
CWR56_RS00115	SM00322	K homology RNA-binding domain
CWR56_RS00135	SM01374	CWR56_RS00135
CWR56_RS00140	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CWR56_RS00205	SM00316	Ribosomal protein S1-like RNA-binding domain
CWR56_RS00225	SM00363	S4 RNA-binding domain
CWR56_RS00225	SM01390	CWR56_RS00225
CWR56_RS00230	SM00662	RNA polymerases D
CWR56_RS00240	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00245	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00270	SM00646	CWR56_RS00270
CWR56_RS00575	SM00450	Rhodanese Homology Domain
CWR56_RS00630	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CWR56_RS00630	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00685	SM00957	SecA DEAD-like domain
CWR56_RS00685	SM00958	SecA preprotein cross-linking domain
CWR56_RS00695	SM00316	Ribosomal protein S1-like RNA-binding domain
CWR56_RS00695	SM00732	Likely ribonuclease with RNase H fold.
CWR56_RS00765	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00780	SM00448	cheY-homologous receiver domain
CWR56_RS00780	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS00785	SM00387	Histidine kinase-like ATPases
CWR56_RS00785	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS00790	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00815	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00835	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS00840	SM00881	CoA binding domain
CWR56_RS00855	SM00854	Bacterial capsule synthesis protein PGA_cap
CWR56_RS00885	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CWR56_RS00910	SM00287	Bacterial SH3 domain homologues
CWR56_RS00950	SM00478	endonuclease III
CWR56_RS00955	SM00155	Phospholipase D. Active site motifs.
CWR56_RS00960	SM00883	Chaperonin 10 Kd subunit
CWR56_RS00970	SM01001	AIR carboxylase
CWR56_RS01020	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS01020	SM00267	diguanylate cyclase
CWR56_RS01065	SM01321	CWR56_RS01065
CWR56_RS01080	SM01001	AIR carboxylase
CWR56_RS01105	SM00798	AICARFT/IMPCHase bienzyme
CWR56_RS01105	SM00851	MGS-like domain
CWR56_RS01110	SM01209	CWR56_RS01110
CWR56_RS01110	SM01210	CWR56_RS01110
CWR56_RS01115	SM01211	CWR56_RS01115
CWR56_RS01210	SM00028	Tetratricopeptide repeats
CWR56_RS01280	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01350	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01350	SM00962	SRP54-type protein, GTPase domain
CWR56_RS01395	SM00028	Tetratricopeptide repeats
CWR56_RS01415	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS01445	SM00481	DNA polymerase alpha chain like domain
CWR56_RS01450	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01500	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS01510	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01530	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS01530	SM00876	Biotin and Thiamin Synthesis associated domain
CWR56_RS01535	SM00354	helix_turn _helix lactose operon repressor
CWR56_RS01550	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01610	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CWR56_RS01660	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01670	SM00387	Histidine kinase-like ATPases
CWR56_RS01670	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS01675	SM00448	cheY-homologous receiver domain
CWR56_RS01675	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS01710	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01740	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS01740	SM01131	CWR56_RS01740
CWR56_RS01755	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01765	SM00387	Histidine kinase-like ATPases
CWR56_RS01770	SM00448	cheY-homologous receiver domain
CWR56_RS01770	SM00850	LytTr DNA-binding domain
CWR56_RS01795	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS01800	SM00954	Region found in RelA / SpoT proteins
CWR56_RS01830	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS01855	SM01061	CAT RNA binding domain
CWR56_RS01910	SM00893	Electron transfer flavoprotein domain
CWR56_RS01915	SM00893	Electron transfer flavoprotein domain
CWR56_RS01920	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS01935	SM00363	S4 RNA-binding domain
CWR56_RS01970	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS02030	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02075	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS02085	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS02100	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02110	SM00387	Histidine kinase-like ATPases
CWR56_RS02110	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS02115	SM00448	cheY-homologous receiver domain
CWR56_RS02115	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS02125	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS02150	SM00642	Alpha-amylase domain
CWR56_RS02175	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS02200	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02215	SM00448	cheY-homologous receiver domain
CWR56_RS02215	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS02220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CWR56_RS02220	SM00387	Histidine kinase-like ATPases
CWR56_RS02220	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS02230	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02240	SM00387	Histidine kinase-like ATPases
CWR56_RS02240	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS02245	SM00448	cheY-homologous receiver domain
CWR56_RS02245	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS02265	SM00829	Enoylreductase
CWR56_RS02305	SM00448	cheY-homologous receiver domain
CWR56_RS02305	SM00850	LytTr DNA-binding domain
CWR56_RS02335	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS02345	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02350	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02355	SM00936	Penicillin-binding protein 5, C-terminal domain 
CWR56_RS02360	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02380	SM00387	Histidine kinase-like ATPases
CWR56_RS02380	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS02385	SM00448	cheY-homologous receiver domain
CWR56_RS02385	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS02395	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS02395	SM00267	diguanylate cyclase
CWR56_RS02415	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS02435	SM00420	helix_turn_helix, Deoxyribose operon repressor
CWR56_RS02440	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS02445	SM00448	cheY-homologous receiver domain
CWR56_RS02460	SM00260	Two component signalling adaptor domain
CWR56_RS02465	SM00267	diguanylate cyclase
CWR56_RS02465	SM00448	cheY-homologous receiver domain
CWR56_RS02470	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CWR56_RS02470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CWR56_RS02475	SM00073	Histidine Phosphotransfer domain
CWR56_RS02475	SM00260	Two component signalling adaptor domain
CWR56_RS02475	SM00387	Histidine kinase-like ATPases
CWR56_RS02475	SM01231	CWR56_RS02475
CWR56_RS02480	SM00260	Two component signalling adaptor domain
CWR56_RS02485	SM00138	Methyltransferase, chemotaxis proteins 
CWR56_RS02575	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CWR56_RS02580	SM00518	AP endonuclease family 2
CWR56_RS02610	SM00478	endonuclease III
CWR56_RS02610	SM00525	CWR56_RS02610
CWR56_RS02650	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CWR56_RS02710	SM00267	diguanylate cyclase
CWR56_RS02715	SM00267	diguanylate cyclase
CWR56_RS02720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS02775	SM00470	ParB-like nuclease domain
CWR56_RS02870	SM00448	cheY-homologous receiver domain
CWR56_RS02870	SM00850	LytTr DNA-binding domain
CWR56_RS02880	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02900	SM00422	helix_turn_helix, mercury resistance
CWR56_RS02900	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS02910	SM00850	LytTr DNA-binding domain
CWR56_RS02945	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS02965	SM00419	helix_turn_helix, cAMP Regulatory protein
CWR56_RS02995	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS03025	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS03035	SM00448	cheY-homologous receiver domain
CWR56_RS03035	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS03040	SM00387	Histidine kinase-like ATPases
CWR56_RS03040	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS03045	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS03060	SM00895	CWR56_RS03060
CWR56_RS03090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS03095	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03105	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS03180	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03185	SM00448	cheY-homologous receiver domain
CWR56_RS03185	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS03190	SM00387	Histidine kinase-like ATPases
CWR56_RS03190	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS03270	SM00354	helix_turn _helix lactose operon repressor
CWR56_RS03275	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03325	SM00422	helix_turn_helix, mercury resistance
CWR56_RS03325	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS03355	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CWR56_RS03365	SM00873	B3/4 domain
CWR56_RS03365	SM00874	tRNA synthetase B5 domain
CWR56_RS03365	SM00896	Ferredoxin-fold anticodon binding domain
CWR56_RS03385	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CWR56_RS03400	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS03400	SM00267	diguanylate cyclase
CWR56_RS03410	SM00463	Small MutS-related domain
CWR56_RS03410	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CWR56_RS03410	SM00534	ATPase domain of DNA mismatch repair MUTS family
CWR56_RS03420	SM00836	DALR anticodon binding domain
CWR56_RS03420	SM01016	Arginyl tRNA synthetase N terminal dom
CWR56_RS03435	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS03440	SM00028	Tetratricopeptide repeats
CWR56_RS03540	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS03545	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS03600	SM00420	helix_turn_helix, Deoxyribose operon repressor
CWR56_RS03600	SM01134	CWR56_RS03600
CWR56_RS03630	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS03630	SM00267	diguanylate cyclase
CWR56_RS03640	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS03650	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03660	SM00981	CWR56_RS03660
CWR56_RS03675	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS03675	SM00267	diguanylate cyclase
CWR56_RS03695	SM00487	DEAD-like helicases superfamily
CWR56_RS03695	SM00490	helicase superfamily c-terminal domain
CWR56_RS03735	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CWR56_RS03745	SM00387	Histidine kinase-like ATPases
CWR56_RS03770	SM00354	helix_turn _helix lactose operon repressor
CWR56_RS03830	SM00646	CWR56_RS03830
CWR56_RS03835	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03890	SM00354	helix_turn _helix lactose operon repressor
CWR56_RS03930	SM00893	Electron transfer flavoprotein domain
CWR56_RS03935	SM00893	Electron transfer flavoprotein domain
CWR56_RS03940	SM00091	PAS domain
CWR56_RS03940	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS03965	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS03965	SM00267	diguanylate cyclase
CWR56_RS03980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS03980	SM00895	CWR56_RS03980
CWR56_RS04010	SM01061	CAT RNA binding domain
CWR56_RS04015	SM00448	cheY-homologous receiver domain
CWR56_RS04015	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS04020	SM00387	Histidine kinase-like ATPases
CWR56_RS04020	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS04025	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04070	SM00487	DEAD-like helicases superfamily
CWR56_RS04070	SM00490	helicase superfamily c-terminal domain
CWR56_RS04085	SM01329	CWR56_RS04085
CWR56_RS04090	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS04120	SM00798	AICARFT/IMPCHase bienzyme
CWR56_RS04145	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS04190	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS04210	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04215	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04220	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04250	SM00506	Appr-1"-p processing enzyme
CWR56_RS04280	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04285	SM01266	CWR56_RS04285
CWR56_RS04295	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04310	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04330	SM00244	prohibitin homologues
CWR56_RS04355	SM00642	Alpha-amylase domain
CWR56_RS04360	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS04360	SM00895	CWR56_RS04360
CWR56_RS04385	SM00357	Cold shock protein domain
CWR56_RS04400	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS04425	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS04425	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04470	SM00316	Ribosomal protein S1-like RNA-binding domain
CWR56_RS04475	SM00481	DNA polymerase alpha chain like domain
CWR56_RS04485	SM00917	LeuA allosteric (dimerisation) domain
CWR56_RS04500	SM01329	CWR56_RS04500
CWR56_RS04530	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CWR56_RS04530	SM00267	diguanylate cyclase
CWR56_RS04535	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS04550	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04570	SM00919	Malic enzyme, NAD binding domain
CWR56_RS04570	SM01274	CWR56_RS04570
CWR56_RS04590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS04590	SM00866	CWR56_RS04590
CWR56_RS04610	SM00448	cheY-homologous receiver domain
CWR56_RS04610	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS04615	SM00387	Histidine kinase-like ATPases
CWR56_RS04615	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS04620	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CWR56_RS04620	SM00267	diguanylate cyclase
CWR56_RS04630	SM00422	helix_turn_helix, mercury resistance
CWR56_RS04630	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS04635	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04640	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04665	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS04670	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04690	SM00267	diguanylate cyclase
CWR56_RS04720	SM00047	Lysozyme subfamily 2
CWR56_RS04745	SM00646	CWR56_RS04745
CWR56_RS04750	SM00646	CWR56_RS04750
CWR56_RS04790	SM01091	Transporter associated domain
CWR56_RS04820	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS04850	SM00893	Electron transfer flavoprotein domain
CWR56_RS04855	SM00893	Electron transfer flavoprotein domain
CWR56_RS04910	SM00354	helix_turn _helix lactose operon repressor
CWR56_RS04940	SM00481	DNA polymerase alpha chain like domain
CWR56_RS04945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS04960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS04960	SM00866	CWR56_RS04960
CWR56_RS05000	SM00852	Probable molybdopterin binding domain
CWR56_RS05015	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05040	SM00448	cheY-homologous receiver domain
CWR56_RS05040	SM00850	LytTr DNA-binding domain
CWR56_RS05065	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS05090	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS05090	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS05095	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS05110	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CWR56_RS05110	SM00475	5'-3' exonuclease
CWR56_RS05110	SM00482	DNA polymerase A domain
CWR56_RS05145	SM00287	Bacterial SH3 domain homologues
CWR56_RS05165	SM00900	CWR56_RS05165
CWR56_RS05235	SM00851	MGS-like domain
CWR56_RS05255	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS05260	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS05295	SM01103	CWR56_RS05295
CWR56_RS05315	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS05315	SM00895	CWR56_RS05315
CWR56_RS05325	SM00893	Electron transfer flavoprotein domain
CWR56_RS05330	SM00893	Electron transfer flavoprotein domain
CWR56_RS05380	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CWR56_RS05385	SM00822	CWR56_RS05385
CWR56_RS05395	SM00825	Beta-ketoacyl synthase
CWR56_RS05400	SM00028	Tetratricopeptide repeats
CWR56_RS05400	SM00267	diguanylate cyclase
CWR56_RS05405	SM00091	PAS domain
CWR56_RS05405	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05510	SM00861	Transketolase, pyrimidine binding domain
CWR56_RS05515	SM00363	S4 RNA-binding domain
CWR56_RS05545	SM00448	cheY-homologous receiver domain
CWR56_RS05600	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CWR56_RS05630	SM00857	Resolvase, N terminal domain
CWR56_RS05635	SM00028	Tetratricopeptide repeats
CWR56_RS05650	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS05755	SM00841	Elongation factor P, C-terminal
CWR56_RS05755	SM01185	CWR56_RS05755
CWR56_RS05765	SM00358	Double-stranded RNA binding motif
CWR56_RS05765	SM00535	Ribonuclease III family
CWR56_RS05770	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS05775	SM00968	SMC proteins Flexible Hinge Domain
CWR56_RS05780	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05780	SM00962	SRP54-type protein, GTPase domain
CWR56_RS05780	SM00963	SRP54-type protein, helical bundle domain
CWR56_RS05790	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05790	SM00962	SRP54-type protein, GTPase domain
CWR56_RS05790	SM00963	SRP54-type protein, helical bundle domain
CWR56_RS05855	SM01058	CarD-like/TRCF domain
CWR56_RS05870	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05875	SM00421	helix_turn_helix, Lux Regulon
CWR56_RS05875	SM00448	cheY-homologous receiver domain
CWR56_RS05890	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05900	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CWR56_RS05900	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CWR56_RS05900	SM00493	CWR56_RS05900
CWR56_RS05910	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS05940	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CWR56_RS05955	SM00732	Likely ribonuclease with RNase H fold.
CWR56_RS05975	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS05985	SM00936	Penicillin-binding protein 5, C-terminal domain 
CWR56_RS05995	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS06025	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS06055	SM00047	Lysozyme subfamily 2
CWR56_RS06055	SM00287	Bacterial SH3 domain homologues
CWR56_RS06060	SM00479	CWR56_RS06060
CWR56_RS06060	SM00481	DNA polymerase alpha chain like domain
CWR56_RS06070	SM00316	Ribosomal protein S1-like RNA-binding domain
CWR56_RS06070	SM00322	K homology RNA-binding domain
CWR56_RS06105	SM00904	Riboflavin kinase
CWR56_RS06115	SM01387	CWR56_RS06115
CWR56_RS06125	SM00316	Ribosomal protein S1-like RNA-binding domain
CWR56_RS06125	SM00322	K homology RNA-binding domain
CWR56_RS06155	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06155	SM00843	CWR56_RS06155
CWR56_RS06160	SM00450	Rhodanese Homology Domain
CWR56_RS06165	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS06175	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06180	SM00322	K homology RNA-binding domain
CWR56_RS06180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CWR56_RS06185	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CWR56_RS06185	SM00267	diguanylate cyclase
CWR56_RS06210	SM00998	Adenylosuccinate lyase C-terminus
CWR56_RS06215	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS06235	SM00479	CWR56_RS06235
CWR56_RS06240	SM01230	CWR56_RS06240
CWR56_RS06270	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06285	SM00387	Histidine kinase-like ATPases
CWR56_RS06285	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS06300	SM00357	Cold shock protein domain
CWR56_RS06305	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS06325	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS06330	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS06425	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS06430	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS06440	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS06460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS06475	SM00796	Allophanate hydrolase subunit 1
CWR56_RS06480	SM00797	Allophanate hydrolase subunit 2
CWR56_RS06485	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS06490	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CWR56_RS06500	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CWR56_RS06575	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06585	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS06595	SM00852	Probable molybdopterin binding domain
CWR56_RS06610	SM00091	PAS domain
CWR56_RS06610	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06620	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS06665	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CWR56_RS06665	SM00267	diguanylate cyclase
CWR56_RS06670	SM00267	diguanylate cyclase
CWR56_RS06675	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS06675	SM00091	PAS domain
CWR56_RS06675	SM00267	diguanylate cyclase
CWR56_RS06680	SM00422	helix_turn_helix, mercury resistance
CWR56_RS06680	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS06725	SM00479	CWR56_RS06725
CWR56_RS06725	SM00487	DEAD-like helicases superfamily
CWR56_RS06725	SM00491	CWR56_RS06725
CWR56_RS06735	SM00636	CWR56_RS06735
CWR56_RS06750	SM01208	CWR56_RS06750
CWR56_RS06760	SM00028	Tetratricopeptide repeats
CWR56_RS06780	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
CWR56_RS06825	SM00905	Dihydroneopterin aldolase
CWR56_RS06840	SM00400	zinc finger
CWR56_RS06840	SM00493	CWR56_RS06840
CWR56_RS06880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS06890	SM00448	cheY-homologous receiver domain
CWR56_RS06890	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS06895	SM00387	Histidine kinase-like ATPases
CWR56_RS06895	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS06900	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06920	SM00450	Rhodanese Homology Domain
CWR56_RS06930	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06935	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06950	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS06950	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS06950	SM00267	diguanylate cyclase
CWR56_RS06955	SM00899	CWR56_RS06955
CWR56_RS06960	SM00899	CWR56_RS06960
CWR56_RS06985	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS06990	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS07015	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07015	SM00930	CWR56_RS07015
CWR56_RS07030	SM00387	Histidine kinase-like ATPases
CWR56_RS07030	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS07040	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS07085	SM01133	CWR56_RS07085
CWR56_RS07090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS07095	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07165	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS07165	SM00267	diguanylate cyclase
CWR56_RS07175	SM00422	helix_turn_helix, mercury resistance
CWR56_RS07185	SM00899	CWR56_RS07185
CWR56_RS07200	SM00363	S4 RNA-binding domain
CWR56_RS07235	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07245	SM00387	Histidine kinase-like ATPases
CWR56_RS07250	SM00448	cheY-homologous receiver domain
CWR56_RS07250	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS07255	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07270	SM00450	Rhodanese Homology Domain
CWR56_RS07285	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS07285	SM00267	diguanylate cyclase
CWR56_RS07290	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07440	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS07450	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS07460	SM01208	CWR56_RS07460
CWR56_RS07480	SM00387	Histidine kinase-like ATPases
CWR56_RS07480	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS07525	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07590	SM00465	GIY-YIG type nucleases (URI domain)
CWR56_RS07620	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07625	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS07630	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS07635	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07670	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07680	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS07680	SM00267	diguanylate cyclase
CWR56_RS07685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS07690	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07715	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS07720	SM00448	cheY-homologous receiver domain
CWR56_RS07720	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS07725	SM00387	Histidine kinase-like ATPases
CWR56_RS07725	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS07740	SM01005	Alanine racemase, C-terminal domain
CWR56_RS07770	SM01321	CWR56_RS07770
CWR56_RS07795	SM00831	Cation transporter/ATPase, N-terminus
CWR56_RS07830	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS07855	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07865	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS07865	SM00267	diguanylate cyclase
CWR56_RS07935	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS07950	SM01266	CWR56_RS07950
CWR56_RS07965	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS07975	SM00448	cheY-homologous receiver domain
CWR56_RS07975	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS07980	SM00387	Histidine kinase-like ATPases
CWR56_RS07980	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS08030	SM00900	CWR56_RS08030
CWR56_RS08050	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS08070	SM00448	cheY-homologous receiver domain
CWR56_RS08070	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS08075	SM00387	Histidine kinase-like ATPases
CWR56_RS08075	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS08090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CWR56_RS08135	SM00341	Helicase and RNase D C-terminal
CWR56_RS08135	SM00487	DEAD-like helicases superfamily
CWR56_RS08135	SM00490	helicase superfamily c-terminal domain
CWR56_RS08135	SM00956	CWR56_RS08135
CWR56_RS08160	SM00876	Biotin and Thiamin Synthesis associated domain
CWR56_RS08175	SM00954	Region found in RelA / SpoT proteins
CWR56_RS08195	SM00852	Probable molybdopterin binding domain
CWR56_RS08200	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS08245	SM00563	Phosphate acyltransferases
CWR56_RS08255	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS08285	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS08305	SM01018	B12 binding domain
CWR56_RS08325	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS08335	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS08335	SM00387	Histidine kinase-like ATPases
CWR56_RS08335	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS08340	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS08340	SM00448	cheY-homologous receiver domain
CWR56_RS08355	SM00448	cheY-homologous receiver domain
CWR56_RS08355	SM00850	LytTr DNA-binding domain
CWR56_RS08375	SM00899	CWR56_RS08375
CWR56_RS08405	SM00645	Papain family cysteine protease
CWR56_RS08420	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS08435	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS08450	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS08485	SM00873	B3/4 domain
CWR56_RS08500	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CWR56_RS08540	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS08550	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS08570	SM00981	CWR56_RS08570
CWR56_RS08580	SM00448	cheY-homologous receiver domain
CWR56_RS08580	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS08585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CWR56_RS08585	SM00387	Histidine kinase-like ATPases
CWR56_RS08585	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS08605	SM00422	helix_turn_helix, mercury resistance
CWR56_RS08620	SM00479	CWR56_RS08620
CWR56_RS08680	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS08690	SM00354	helix_turn _helix lactose operon repressor
CWR56_RS08700	SM00640	Glycosyl hydrolases family 32
CWR56_RS08740	SM00850	LytTr DNA-binding domain
CWR56_RS08750	SM00855	Phosphoglycerate mutase family
CWR56_RS08765	SM00563	Phosphate acyltransferases
CWR56_RS08795	SM00831	Cation transporter/ATPase, N-terminus
CWR56_RS08810	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS08815	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS08820	SM00387	Histidine kinase-like ATPases
CWR56_RS08820	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS08825	SM00448	cheY-homologous receiver domain
CWR56_RS08825	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS08860	SM00830	Chorismate mutase type II
CWR56_RS08880	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS08880	SM00267	diguanylate cyclase
CWR56_RS08885	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CWR56_RS08885	SM00091	PAS domain
CWR56_RS08885	SM00267	diguanylate cyclase
CWR56_RS08915	SM00857	Resolvase, N terminal domain
CWR56_RS08920	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS08920	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS08950	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS08995	SM00646	CWR56_RS08995
CWR56_RS09015	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS09040	SM00857	Resolvase, N terminal domain
CWR56_RS09055	SM00877	CWR56_RS09055
CWR56_RS09065	SM00448	cheY-homologous receiver domain
CWR56_RS09065	SM01012	CWR56_RS09065
CWR56_RS09090	SM00877	CWR56_RS09090
CWR56_RS09095	SM00877	CWR56_RS09095
CWR56_RS09105	SM00877	CWR56_RS09105
CWR56_RS09130	SM00877	CWR56_RS09130
CWR56_RS09145	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS09165	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09180	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS09220	SM00878	Biotin carboxylase C-terminal domain
CWR56_RS09265	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS09270	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09280	SM00387	Histidine kinase-like ATPases
CWR56_RS09280	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS09310	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09315	SM00387	Histidine kinase-like ATPases
CWR56_RS09315	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS09320	SM00448	cheY-homologous receiver domain
CWR56_RS09320	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS09330	SM00448	cheY-homologous receiver domain
CWR56_RS09330	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS09335	SM00387	Histidine kinase-like ATPases
CWR56_RS09335	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS09340	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09415	SM00853	MutL C terminal dimerisation domain
CWR56_RS09415	SM01340	CWR56_RS09415
CWR56_RS09420	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CWR56_RS09420	SM00534	ATPase domain of DNA mismatch repair MUTS family
CWR56_RS09425	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09470	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS09495	SM00287	Bacterial SH3 domain homologues
CWR56_RS09510	SM00357	Cold shock protein domain
CWR56_RS09540	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CWR56_RS09555	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS09630	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS09640	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS09650	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09650	SM01086	C-terminal, D2-small domain, of ClpB protein
CWR56_RS09665	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS09670	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09720	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CWR56_RS09755	SM00422	helix_turn_helix, mercury resistance
CWR56_RS09760	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS09795	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS09820	SM00363	S4 RNA-binding domain
CWR56_RS09875	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CWR56_RS09915	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS09920	SM00852	Probable molybdopterin binding domain
CWR56_RS09940	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CWR56_RS09945	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CWR56_RS09975	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CWR56_RS09980	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CWR56_RS10015	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CWR56_RS10040	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10050	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10075	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CWR56_RS10085	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CWR56_RS10110	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10115	SM00487	DEAD-like helicases superfamily
CWR56_RS10115	SM00490	helicase superfamily c-terminal domain
CWR56_RS10140	SM00420	helix_turn_helix, Deoxyribose operon repressor
CWR56_RS10140	SM01134	CWR56_RS10140
CWR56_RS10150	SM00387	Histidine kinase-like ATPases
CWR56_RS10150	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS10155	SM00448	cheY-homologous receiver domain
CWR56_RS10155	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS10175	SM00838	Elongation factor G C-terminus
CWR56_RS10210	SM00028	Tetratricopeptide repeats
CWR56_RS10210	SM00671	Sel1-like repeats.
CWR56_RS10250	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CWR56_RS10270	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS10270	SM00267	diguanylate cyclase
CWR56_RS10315	SM00936	Penicillin-binding protein 5, C-terminal domain 
CWR56_RS10325	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS10335	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CWR56_RS10335	SM00534	ATPase domain of DNA mismatch repair MUTS family
CWR56_RS10345	SM00220	Serine/Threonine protein kinases, catalytic domain
CWR56_RS10385	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS10385	SM00876	Biotin and Thiamin Synthesis associated domain
CWR56_RS10390	SM00876	Biotin and Thiamin Synthesis associated domain
CWR56_RS10425	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CWR56_RS10440	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS10465	SM00100	Cyclic nucleotide-monophosphate binding domain
CWR56_RS10480	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10490	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS10505	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS10505	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CWR56_RS10515	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CWR56_RS10520	SM00487	DEAD-like helicases superfamily
CWR56_RS10520	SM00490	helicase superfamily c-terminal domain
CWR56_RS10535	SM00487	DEAD-like helicases superfamily
CWR56_RS10535	SM00490	helicase superfamily c-terminal domain
CWR56_RS10540	SM00646	CWR56_RS10540
CWR56_RS10555	SM00047	Lysozyme subfamily 2
CWR56_RS10570	SM00642	Alpha-amylase domain
CWR56_RS10575	SM00481	DNA polymerase alpha chain like domain
CWR56_RS10600	SM00881	CoA binding domain
CWR56_RS10665	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS10675	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10680	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10685	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS10695	SM00947	Carbonic anhydrase
CWR56_RS10700	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS10705	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS10775	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS10810	SM00100	Cyclic nucleotide-monophosphate binding domain
CWR56_RS10810	SM00419	helix_turn_helix, cAMP Regulatory protein
CWR56_RS10840	SM01130	CWR56_RS10840
CWR56_RS10860	SM00267	diguanylate cyclase
CWR56_RS10890	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10955	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS10985	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS10985	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS11005	SM00422	helix_turn_helix, mercury resistance
CWR56_RS11005	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS11095	SM00507	HNH nucleases
CWR56_RS11175	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS11270	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CWR56_RS11270	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CWR56_RS11270	SM00493	CWR56_RS11270
CWR56_RS11280	SM01007	Class II Aldolase and Adducin N-terminal domain
CWR56_RS11285	SM01007	Class II Aldolase and Adducin N-terminal domain
CWR56_RS11290	SM00829	Enoylreductase
CWR56_RS11310	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS11330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS11345	SM00387	Histidine kinase-like ATPases
CWR56_RS11345	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS11355	SM00448	cheY-homologous receiver domain
CWR56_RS11355	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS11365	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS11405	SM01040	BRO family, N-terminal domain
CWR56_RS11470	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS11480	SM00357	Cold shock protein domain
CWR56_RS11485	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS11495	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS11510	SM00448	cheY-homologous receiver domain
CWR56_RS11510	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS11515	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS11535	SM00861	Transketolase, pyrimidine binding domain
CWR56_RS11545	SM00829	Enoylreductase
CWR56_RS11550	SM00829	Enoylreductase
CWR56_RS11570	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS11605	SM01240	CWR56_RS11605
CWR56_RS11730	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS11880	SM00650	Ribosomal RNA adenine dimethylases
CWR56_RS11900	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS11960	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS11975	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS12020	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS12025	SM00267	diguanylate cyclase
CWR56_RS12030	SM00267	diguanylate cyclase
CWR56_RS12075	SM00873	B3/4 domain
CWR56_RS12085	SM00479	CWR56_RS12085
CWR56_RS12090	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
CWR56_RS12100	SM00479	CWR56_RS12100
CWR56_RS12125	SM00287	Bacterial SH3 domain homologues
CWR56_RS12135	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CWR56_RS12135	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CWR56_RS12135	SM00493	CWR56_RS12135
CWR56_RS12140	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS12175	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS12210	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS12210	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS12270	SM00346	helix_turn_helix isocitrate lyase regulation
CWR56_RS12305	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS12305	SM00924	MgtE intracellular N domain
CWR56_RS12370	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS12385	SM00490	helicase superfamily c-terminal domain
CWR56_RS12410	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS12435	SM00271	DnaJ molecular chaperone homology domain
CWR56_RS12455	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS12470	SM00838	Elongation factor G C-terminus
CWR56_RS12495	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CWR56_RS12525	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS12535	SM01208	CWR56_RS12535
CWR56_RS12540	SM00986	Uracil DNA glycosylase superfamily
CWR56_RS12540	SM00987	UreE urease accessory protein, C-terminal domain 
CWR56_RS12595	SM00091	PAS domain
CWR56_RS12595	SM00387	Histidine kinase-like ATPases
CWR56_RS12595	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS12615	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CWR56_RS12620	SM00936	Penicillin-binding protein 5, C-terminal domain 
CWR56_RS12645	SM00831	Cation transporter/ATPase, N-terminus
CWR56_RS12670	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS12685	SM01061	CAT RNA binding domain
CWR56_RS12710	SM00870	CWR56_RS12710
CWR56_RS12755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CWR56_RS12770	SM00642	Alpha-amylase domain
CWR56_RS12790	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS12810	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS12815	SM00387	Histidine kinase-like ATPases
CWR56_RS12815	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS12820	SM00448	cheY-homologous receiver domain
CWR56_RS12820	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS12925	SM00764	Citrate lyase ligase C-terminal domain
CWR56_RS12935	SM00487	DEAD-like helicases superfamily
CWR56_RS12935	SM00490	helicase superfamily c-terminal domain
CWR56_RS12940	SM01120	CWR56_RS12940
CWR56_RS12940	SM01121	CWR56_RS12940
CWR56_RS12965	SM00422	helix_turn_helix, mercury resistance
CWR56_RS12990	SM00872	Alpha mannosidase, middle domain
CWR56_RS12995	SM00387	Histidine kinase-like ATPases
CWR56_RS12995	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS13000	SM00448	cheY-homologous receiver domain
CWR56_RS13000	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS13015	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CWR56_RS13035	SM00220	Serine/Threonine protein kinases, catalytic domain
CWR56_RS13035	SM00740	CWR56_RS13035
CWR56_RS13040	SM00331	Sigma factor PP2C-like phosphatases
CWR56_RS13040	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CWR56_RS13045	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS13075	SM00487	DEAD-like helicases superfamily
CWR56_RS13075	SM00490	helicase superfamily c-terminal domain
CWR56_RS13085	SM01409	CWR56_RS13085
CWR56_RS13090	SM00072	Guanylate kinase homologues.
CWR56_RS13115	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS13130	SM00363	S4 RNA-binding domain
CWR56_RS13155	SM00448	cheY-homologous receiver domain
CWR56_RS13155	SM00850	LytTr DNA-binding domain
CWR56_RS13160	SM00387	Histidine kinase-like ATPases
CWR56_RS13165	SM00850	LytTr DNA-binding domain
CWR56_RS13240	SM00363	S4 RNA-binding domain
CWR56_RS13315	SM01207	CWR56_RS13315
CWR56_RS13345	SM00091	PAS domain
CWR56_RS13345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CWR56_RS13345	SM00387	Histidine kinase-like ATPases
CWR56_RS13345	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS13350	SM00448	cheY-homologous receiver domain
CWR56_RS13350	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS13390	SM00864	Tubulin/FtsZ family, GTPase domain
CWR56_RS13390	SM00865	Tubulin/FtsZ family, C-terminal domain
CWR56_RS13440	SM00740	CWR56_RS13440
CWR56_RS13475	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS13475	SM00267	diguanylate cyclase
CWR56_RS13485	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS13495	SM01061	CAT RNA binding domain
CWR56_RS13505	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS13510	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS13540	SM00882	Coenzyme A transferase
CWR56_RS13545	SM00882	Coenzyme A transferase
CWR56_RS13560	SM00198	SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
CWR56_RS13570	SM00890	Domain of unknown function
CWR56_RS13585	SM00331	Sigma factor PP2C-like phosphatases
CWR56_RS13615	SM00014	Acid phosphatase homologues
CWR56_RS13665	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS13695	SM00910	CWR56_RS13695
CWR56_RS13795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CWR56_RS13795	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS13800	SM00448	cheY-homologous receiver domain
CWR56_RS13800	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS13850	SM00091	PAS domain
CWR56_RS13850	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS13870	SM00287	Bacterial SH3 domain homologues
CWR56_RS13900	SM00729	Elongator protein 3, MiaB family, Radical SAM
CWR56_RS13905	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS13915	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CWR56_RS13915	SM00954	Region found in RelA / SpoT proteins
CWR56_RS13950	SM00793	Accessory gene regulator B
CWR56_RS13965	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS13965	SM00267	diguanylate cyclase
CWR56_RS13970	SM00267	diguanylate cyclase
CWR56_RS14000	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS14005	SM00646	CWR56_RS14005
CWR56_RS14040	SM00287	Bacterial SH3 domain homologues
CWR56_RS14055	SM00984	UDP binding domain
CWR56_RS14120	SM00646	CWR56_RS14120
CWR56_RS14140	SM00645	Papain family cysteine protease
CWR56_RS14165	SM00490	helicase superfamily c-terminal domain
CWR56_RS14165	SM00957	SecA DEAD-like domain
CWR56_RS14165	SM00958	SecA preprotein cross-linking domain
CWR56_RS14190	SM00060	Fibronectin type 3 domain
CWR56_RS14190	SM01276	CWR56_RS14190
CWR56_RS14215	SM01323	CWR56_RS14215
CWR56_RS14235	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14240	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CWR56_RS14280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS14280	SM00895	CWR56_RS14280
CWR56_RS14295	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14300	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14310	SM01119	CWR56_RS14310
CWR56_RS14350	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS14385	SM00831	Cation transporter/ATPase, N-terminus
CWR56_RS14410	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS14410	SM00448	cheY-homologous receiver domain
CWR56_RS14435	SM00829	Enoylreductase
CWR56_RS14440	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS14460	SM01321	CWR56_RS14460
CWR56_RS14485	SM00420	helix_turn_helix, Deoxyribose operon repressor
CWR56_RS14485	SM01134	CWR56_RS14485
CWR56_RS14525	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS14525	SM01091	Transporter associated domain
CWR56_RS14550	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14580	SM00091	PAS domain
CWR56_RS14580	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14590	SM00858	CWR56_RS14590
CWR56_RS14600	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS14600	SM00267	diguanylate cyclase
CWR56_RS14610	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS14660	SM00866	CWR56_RS14660
CWR56_RS14670	SM00267	diguanylate cyclase
CWR56_RS14680	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14700	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14745	SM00873	B3/4 domain
CWR56_RS14750	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS14750	SM00267	diguanylate cyclase
CWR56_RS14815	SM00487	DEAD-like helicases superfamily
CWR56_RS14850	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14860	SM00387	Histidine kinase-like ATPases
CWR56_RS14865	SM00448	cheY-homologous receiver domain
CWR56_RS14865	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS14870	SM00062	Bacterial periplasmic substrate-binding proteins
CWR56_RS14875	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14910	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14925	SM01321	CWR56_RS14925
CWR56_RS14930	SM00387	Histidine kinase-like ATPases
CWR56_RS14935	SM00448	cheY-homologous receiver domain
CWR56_RS14935	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS14945	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS14960	SM01130	CWR56_RS14960
CWR56_RS14975	SM00858	CWR56_RS14975
CWR56_RS14985	SM00346	helix_turn_helix isocitrate lyase regulation
CWR56_RS14995	SM00287	Bacterial SH3 domain homologues
CWR56_RS15020	SM00872	Alpha mannosidase, middle domain
CWR56_RS15110	SM01061	CAT RNA binding domain
CWR56_RS15140	SM01058	CarD-like/TRCF domain
CWR56_RS15150	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS15220	SM00387	Histidine kinase-like ATPases
CWR56_RS15225	SM00448	cheY-homologous receiver domain
CWR56_RS15225	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS15235	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS15330	SM00487	DEAD-like helicases superfamily
CWR56_RS15410	SM00872	Alpha mannosidase, middle domain
CWR56_RS15435	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS15435	SM00866	CWR56_RS15435
CWR56_RS15440	SM00642	Alpha-amylase domain
CWR56_RS15455	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS15475	SM01061	CAT RNA binding domain
CWR56_RS15570	SM01061	CAT RNA binding domain
CWR56_RS15585	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS15585	SM00966	SpoVT / AbrB like domain 
CWR56_RS15600	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CWR56_RS15620	SM01061	CAT RNA binding domain
CWR56_RS15645	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS15670	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS15705	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS15735	SM00850	LytTr DNA-binding domain
CWR56_RS15795	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS15800	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS15810	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS15870	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS15880	SM00316	Ribosomal protein S1-like RNA-binding domain
CWR56_RS15880	SM00357	Cold shock protein domain
CWR56_RS15880	SM00955	CWR56_RS15880
CWR56_RS15915	SM01192	CWR56_RS15915
CWR56_RS15915	SM01193	CWR56_RS15915
CWR56_RS15935	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CWR56_RS15950	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CWR56_RS15995	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16020	SM00422	helix_turn_helix, mercury resistance
CWR56_RS16040	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS16040	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS16055	SM00422	helix_turn_helix, mercury resistance
CWR56_RS16075	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CWR56_RS16080	SM00387	Histidine kinase-like ATPases
CWR56_RS16080	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS16085	SM00448	cheY-homologous receiver domain
CWR56_RS16085	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS16115	SM00347	helix_turn_helix multiple antibiotic resistance protein
CWR56_RS16145	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS16145	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS16150	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16160	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16195	SM01130	CWR56_RS16195
CWR56_RS16200	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CWR56_RS16205	SM01130	CWR56_RS16205
CWR56_RS16220	SM00244	prohibitin homologues
CWR56_RS16250	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16310	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS16310	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16365	SM00448	cheY-homologous receiver domain
CWR56_RS16365	SM00850	LytTr DNA-binding domain
CWR56_RS16400	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16420	SM00448	cheY-homologous receiver domain
CWR56_RS16420	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS16425	SM00387	Histidine kinase-like ATPases
CWR56_RS16425	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS16430	SM00448	cheY-homologous receiver domain
CWR56_RS16430	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS16460	SM00899	CWR56_RS16460
CWR56_RS16495	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16515	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CWR56_RS16575	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16600	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16600	SM00464	Found in ATP-dependent protease La (LON)
CWR56_RS16615	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16615	SM00994	ClpX C4-type zinc finger
CWR56_RS16615	SM01086	C-terminal, D2-small domain, of ClpB protein
CWR56_RS16640	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CWR56_RS16640	SM00292	breast cancer carboxy-terminal domain
CWR56_RS16640	SM00532	Ligase N family
CWR56_RS16665	SM00902	Iron hydrogenase small subunit
CWR56_RS16695	SM00448	cheY-homologous receiver domain
CWR56_RS16695	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS16715	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16730	SM00793	Accessory gene regulator B
CWR56_RS16745	SM00448	cheY-homologous receiver domain
CWR56_RS16745	SM00850	LytTr DNA-binding domain
CWR56_RS16775	SM00028	Tetratricopeptide repeats
CWR56_RS16785	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS16790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS16795	SM00873	B3/4 domain
CWR56_RS16815	SM00344	helix_turn_helix ASNC type
CWR56_RS16820	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16825	SM00448	cheY-homologous receiver domain
CWR56_RS16825	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS16845	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS16850	SM00267	diguanylate cyclase
CWR56_RS16905	SM00481	DNA polymerase alpha chain like domain
CWR56_RS16930	SM00481	DNA polymerase alpha chain like domain
CWR56_RS16945	SM00155	Phospholipase D. Active site motifs.
CWR56_RS16955	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CWR56_RS16960	SM00902	Iron hydrogenase small subunit
CWR56_RS16960	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CWR56_RS16965	SM00534	ATPase domain of DNA mismatch repair MUTS family
CWR56_RS16975	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CWR56_RS16975	SM00465	GIY-YIG type nucleases (URI domain)
CWR56_RS16985	SM00487	DEAD-like helicases superfamily
CWR56_RS16985	SM00490	helicase superfamily c-terminal domain
CWR56_RS17010	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17035	SM01004	Delta-aminolevulinic acid dehydratase
CWR56_RS17120	SM00855	Phosphoglycerate mutase family
CWR56_RS17210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS17210	SM00866	CWR56_RS17210
CWR56_RS17220	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CWR56_RS17220	SM00245	tail specific protease
CWR56_RS17240	SM00861	Transketolase, pyrimidine binding domain
CWR56_RS17260	SM01005	Alanine racemase, C-terminal domain
CWR56_RS17270	SM00116	Domain in cystathionine beta-synthase and other proteins.
CWR56_RS17285	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17355	SM00226	Low molecular weight phosphatase family
CWR56_RS17370	SM00937	CWR56_RS17370
CWR56_RS17390	SM00357	Cold shock protein domain
CWR56_RS17390	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17390	SM00959	Rho termination factor, N-terminal domain
CWR56_RS17405	SM00331	Sigma factor PP2C-like phosphatases
CWR56_RS17405	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CWR56_RS17430	SM00363	S4 RNA-binding domain
CWR56_RS17435	SM00411	bacterial (prokaryotic) histone like domain
CWR56_RS17450	SM00966	SpoVT / AbrB like domain 
CWR56_RS17460	SM00487	DEAD-like helicases superfamily
CWR56_RS17460	SM00490	helicase superfamily c-terminal domain
CWR56_RS17460	SM00982	CWR56_RS17460
CWR56_RS17460	SM01058	CarD-like/TRCF domain
CWR56_RS17480	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17515	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17525	SM01400	CWR56_RS17525
CWR56_RS17570	SM00650	Ribosomal RNA adenine dimethylases
CWR56_RS17575	SM00493	CWR56_RS17575
CWR56_RS17600	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17605	SM00481	DNA polymerase alpha chain like domain
CWR56_RS17615	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17620	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17670	SM00344	helix_turn_helix ASNC type
CWR56_RS17770	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17775	SM00977	TilS substrate C-terminal domain
CWR56_RS17800	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS17800	SM00895	CWR56_RS17800
CWR56_RS17810	SM00257	Lysin motif
CWR56_RS17870	SM00857	Resolvase, N terminal domain
CWR56_RS17895	SM00422	helix_turn_helix, mercury resistance
CWR56_RS17905	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS17910	SM00387	Histidine kinase-like ATPases
CWR56_RS17910	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS17915	SM00448	cheY-homologous receiver domain
CWR56_RS17915	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS17920	SM00851	MGS-like domain
CWR56_RS17920	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CWR56_RS17925	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CWR56_RS17930	SM00851	MGS-like domain
CWR56_RS17930	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CWR56_RS17935	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CWR56_RS17940	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CWR56_RS17960	SM01018	B12 binding domain
CWR56_RS17975	SM00387	Histidine kinase-like ATPases
CWR56_RS17975	SM00388	His Kinase A (phosphoacceptor) domain
CWR56_RS17980	SM00448	cheY-homologous receiver domain
CWR56_RS17980	SM00862	Transcriptional regulatory protein, C terminal
CWR56_RS18025	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18055	SM00422	helix_turn_helix, mercury resistance
CWR56_RS18055	SM00871	Bacterial transcription activator, effector binding domain
CWR56_RS18095	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18105	SM00267	diguanylate cyclase
CWR56_RS18115	SM01130	CWR56_RS18115
CWR56_RS18150	SM00422	helix_turn_helix, mercury resistance
CWR56_RS18215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CWR56_RS18215	SM00866	CWR56_RS18215
CWR56_RS18255	SM00052	Putative diguanylate phosphodiesterase
CWR56_RS18260	SM00849	Metallo-beta-lactamase superfamily
CWR56_RS18275	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18300	SM00788	Adenylosuccinate synthetase
CWR56_RS18370	SM00028	Tetratricopeptide repeats
CWR56_RS18370	SM00530	Helix-turn-helix XRE-family like proteins 
CWR56_RS18375	SM00909	Sporulation and spore germination
CWR56_RS18385	SM00470	ParB-like nuclease domain
CWR56_RS18395	SM00470	ParB-like nuclease domain
CWR56_RS18405	SM01228	CWR56_RS18405
CWR56_RS18415	SM00393	Putative single-stranded nucleic acids-binding domain
CWR56_RS18415	SM01245	CWR56_RS18415
CWR56_RS18425	SM01234	CWR56_RS18425
CWR56_RS18440	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18440	SM00760	Bacterial dnaA protein helix-turn-helix domain
CWR56_RS18445	SM00480	DNA polymerase III beta subunit
CWR56_RS18460	SM00387	Histidine kinase-like ATPases
CWR56_RS18460	SM00433	TopoisomeraseII
CWR56_RS18465	SM00434	DNA Topoisomerase IV
CWR56_RS18485	SM00387	Histidine kinase-like ATPases
CWR56_RS18570	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18580	SM00493	CWR56_RS18580
CWR56_RS18830	SM00878	Biotin carboxylase C-terminal domain
CWR56_RS18835	SM00838	Elongation factor G C-terminus
CWR56_RS18835	SM00889	Elongation factor G, domain IV
CWR56_RS18855	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18855	SM01086	C-terminal, D2-small domain, of ClpB protein
CWR56_RS18860	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18870	SM00670	Large family of predicted nucleotide-binding domains
CWR56_RS18880	SM00342	helix_turn_helix, arabinose operon control protein
CWR56_RS18910	SM00861	Transketolase, pyrimidine binding domain
CWR56_RS18925	SM00382	ATPases associated with a variety of cellular activities
CWR56_RS18950	SM01007	Class II Aldolase and Adducin N-terminal domain
CWR56_RS18975	SM00946	Prolyl-tRNA synthetase, C-terminal
CWR56_RS18990	SM00840	CWR56_RS18990
CWR56_RS18995	SM00535	Ribonuclease III family
CWR56_RS19005	SM00967	RNA 2'-O ribose methyltransferase substrate binding
