locus-tag class description CLI_RS00010 PF00308 Bacterial dnaA protein CLI_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix CLI_RS00010 PF11638 DnaA N-terminal domain CLI_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain CLI_RS00015 PF02767 DNA polymerase III beta subunit, central domain CLI_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain CLI_RS00025 PF02463 RecF/RecN/SMC N terminal domain CLI_RS00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS00035 PF00986 DNA gyrase B subunit, carboxyl terminus CLI_RS00035 PF00204 DNA gyrase B CLI_RS00035 PF01751 Toprim domain CLI_RS00040 PF00521 DNA gyrase/topoisomerase IV, subunit A CLI_RS00040 PF03989 DNA gyrase C-terminal domain, beta-propeller CLI_RS00075 PF02829 3H domain CLI_RS00075 PF08279 HTH domain CLI_RS00080 PF04015 Domain of unknown function (DUF362) CLI_RS00085 PF03699 Uncharacterised protein family (UPF0182) CLI_RS00095 PF01266 FAD dependent oxidoreductase CLI_RS00105 PF02403 Seryl-tRNA synthetase N-terminal domain CLI_RS00105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS00140 PF02666 Phosphatidylserine decarboxylase CLI_RS00145 PF03109 ABC1 family CLI_RS00160 PF13426 PAS domain CLI_RS00160 PF02954 Bacterial regulatory protein, Fis family CLI_RS00160 PF00158 Sigma-54 interaction domain CLI_RS00165 PF01053 Cys/Met metabolism PLP-dependent enzyme CLI_RS00170 PF14437 MafB19-like deaminase CLI_RS00180 PF12169 DNA polymerase III subunits gamma and tau domain III CLI_RS00185 PF02575 YbaB/EbfC DNA-binding family CLI_RS00190 PF02132 RecR protein CLI_RS00190 PF13662 Toprim domain CLI_RS00205 PF03749 Sugar fermentation stimulation protein RE domain CLI_RS00205 PF17746 SfsA N-terminal OB domain CLI_RS00210 PF00293 NUDIX domain CLI_RS00210 PF09297 NADH pyrophosphatase zinc ribbon domain CLI_RS00230 PF00899 ThiF family CLI_RS00240 PF13302 Acetyltransferase (GNAT) domain CLI_RS00365 PF02146 Sir2 family CLI_RS00375 PF02016 LD-carboxypeptidase N-terminal domain CLI_RS00375 PF17676 LD-carboxypeptidase C-terminal domain CLI_RS00400 PF01276 Orn/Lys/Arg decarboxylase, major domain CLI_RS00400 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLI_RS00405 PF02223 Thymidylate kinase CLI_RS00410 PF06153 Cyclic-di-AMP receptor CLI_RS00420 PF04468 PSP1 C-terminal conserved region CLI_RS00430 PF12838 4Fe-4S dicluster domain CLI_RS00435 PF05175 Methyltransferase small domain CLI_RS00440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI_RS00445 PF00877 NlpC/P60 family CLI_RS00450 PF18277 AbrB C-terminal domain CLI_RS00450 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLI_RS00465 PF02542 YgbB family CLI_RS00475 PF01522 Polysaccharide deacetylase CLI_RS00485 PF07670 Nucleoside recognition CLI_RS00490 PF07670 Nucleoside recognition CLI_RS00495 PF01554 MatE CLI_RS00500 PF03167 Uracil DNA glycosylase superfamily CLI_RS00510 PF01588 Putative tRNA binding domain CLI_RS00510 PF09334 tRNA synthetases class I (M) CLI_RS00515 PF04286 Protein of unknown function (DUF445) CLI_RS00520 PF01026 TatD related DNase CLI_RS00525 PF06725 3D domain CLI_RS00525 PF03990 G5-linked-Ubiquitin-like domain CLI_RS00525 PF07501 G5 domain CLI_RS00530 PF13662 Toprim domain CLI_RS00530 PF13331 Domain of unknown function (DUF4093) CLI_RS00535 PF00398 Ribosomal RNA adenine dimethylase CLI_RS00560 PF00005 ABC transporter CLI_RS00565 PF12704 MacB-like periplasmic core domain CLI_RS00565 PF02687 FtsX-like permease family CLI_RS00570 PF10609 NUBPL iron-transfer P-loop NTPase CLI_RS00590 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS00595 PF02308 MgtC family CLI_RS00600 PF03477 ATP cone domain CLI_RS00600 PF13597 Anaerobic ribonucleoside-triphosphate reductase CLI_RS00605 PF04055 Radical SAM superfamily CLI_RS00620 PF03551 Transcriptional regulator PadR-like family CLI_RS00630 PF00133 tRNA synthetases class I (I, L, M and V) CLI_RS00630 PF08264 Anticodon-binding domain of tRNA CLI_RS00635 PF00356 Bacterial regulatory proteins, lacI family CLI_RS00640 PF13195 Protein of unknown function (DUF4011) CLI_RS00640 PF13086 AAA domain CLI_RS00640 PF13087 AAA domain CLI_RS00645 PF01050 Mannose-6-phosphate isomerase CLI_RS00645 PF00483 Nucleotidyl transferase CLI_RS00650 PF01969 Protein of unknown function DUF111 CLI_RS00655 PF02540 NAD synthase CLI_RS00660 PF00731 AIR carboxylase CLI_RS00670 PF01547 Bacterial extracellular solute-binding protein CLI_RS00675 PF00534 Glycosyl transferases group 1 CLI_RS00675 PF13439 Glycosyltransferase Family 4 CLI_RS00700 PF13439 Glycosyltransferase Family 4 CLI_RS00700 PF00534 Glycosyl transferases group 1 CLI_RS00710 PF05582 YabG peptidase U57 CLI_RS00715 PF06257 Biofilm formation stimulator VEG CLI_RS00720 PF01476 LysM domain CLI_RS00730 PF03575 Peptidase family S51 CLI_RS00735 PF02875 Mur ligase family, glutamate ligase domain CLI_RS00735 PF08245 Mur ligase middle domain CLI_RS00735 PF08443 RimK-like ATP-grasp domain CLI_RS00740 PF00288 GHMP kinases N terminal domain CLI_RS00740 PF08544 GHMP kinases C terminal CLI_RS00755 PF03323 Bacillus/Clostridium GerA spore germination protein CLI_RS00760 PF03845 Spore germination protein CLI_RS00765 PF05504 Spore germination B3/ GerAC like, C-terminal CLI_RS00770 PF09551 Stage II sporulation protein R (spore_II_R) CLI_RS00775 PF00534 Glycosyl transferases group 1 CLI_RS00775 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CLI_RS00780 PF14620 YpeB sporulation CLI_RS00800 PF00117 Glutamine amidotransferase class-I CLI_RS00800 PF06418 CTP synthase N-terminus CLI_RS00810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI_RS00810 PF07498 Rho termination factor, N-terminal domain CLI_RS00810 PF07497 Rho termination factor, RNA-binding domain CLI_RS00815 PF01197 Ribosomal protein L31 CLI_RS00820 PF00265 Thymidine kinase CLI_RS00825 PF07136 Protein of unknown function (DUF1385) CLI_RS00830 PF17827 PrmC N-terminal domain CLI_RS00830 PF05175 Methyltransferase small domain CLI_RS00835 PF03462 PCRF domain CLI_RS00835 PF00472 RF-1 domain CLI_RS00850 PF03481 Putative GTP-binding controlling metal-binding CLI_RS00850 PF01300 Telomere recombination CLI_RS00855 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLI_RS00860 PF02502 Ribose/Galactose Isomerase CLI_RS00875 PF00953 Glycosyl transferase family 4 CLI_RS00880 PF02350 UDP-N-acetylglucosamine 2-epimerase CLI_RS00890 PF00119 ATP synthase A chain CLI_RS00895 PF00137 ATP synthase subunit C CLI_RS00900 PF00430 ATP synthase B/B' CF(0) CLI_RS00905 PF00213 ATP synthase delta (OSCP) subunit CLI_RS00910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI_RS00910 PF00306 ATP synthase alpha/beta chain, C terminal domain CLI_RS00910 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI_RS00915 PF00231 ATP synthase CLI_RS00920 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI_RS00920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI_RS00925 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLI_RS00925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLI_RS00935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLI_RS00940 PF08486 Stage II sporulation protein CLI_RS00950 PF12116 Stage III sporulation protein D CLI_RS00960 PF06866 Protein of unknown function (DUF1256) CLI_RS00965 PF01171 PP-loop family CLI_RS00995 PF02772 S-adenosylmethionine synthetase, central domain CLI_RS00995 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLI_RS00995 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLI_RS01000 PF14490 Helix-hairpin-helix containing domain CLI_RS01000 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CLI_RS01000 PF13538 UvrD-like helicase C-terminal domain CLI_RS01015 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CLI_RS01015 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLI_RS01020 PF07516 SecA Wing and Scaffold domain CLI_RS01020 PF02810 SEC-C motif CLI_RS01020 PF07517 SecA DEAD-like domain CLI_RS01020 PF01043 SecA preprotein cross-linking domain CLI_RS01030 PF00472 RF-1 domain CLI_RS01030 PF03462 PCRF domain CLI_RS01040 PF17674 HHH domain CLI_RS01040 PF00575 S1 RNA binding domain CLI_RS01040 PF09371 Tex-like protein N-terminal domain CLI_RS01040 PF16921 Tex protein YqgF-like domain CLI_RS01045 PF12822 ECF transporter, substrate-specific component CLI_RS01065 PF01022 Bacterial regulatory protein, arsR family CLI_RS01070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI_RS01070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS01080 PF04607 Region found in RelA / SpoT proteins CLI_RS01090 PF08264 Anticodon-binding domain of tRNA CLI_RS01090 PF09334 tRNA synthetases class I (M) CLI_RS01090 PF13603 Leucyl-tRNA synthetase, Domain 2 CLI_RS01090 PF00133 tRNA synthetases class I (I, L, M and V) CLI_RS01095 PF00581 Rhodanese-like domain CLI_RS01110 PF00684 DnaJ central domain CLI_RS01110 PF00226 DnaJ domain CLI_RS01110 PF01556 DnaJ C terminal domain CLI_RS01130 PF01116 Fructose-bisphosphate aldolase class-II CLI_RS01140 PF04239 Protein of unknown function (DUF421) CLI_RS01145 PF02824 TGS domain CLI_RS01145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLI_RS01145 PF03129 Anticodon binding domain CLI_RS01145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS01155 PF01066 CDP-alcohol phosphatidyltransferase CLI_RS01160 PF00571 CBS domain CLI_RS01165 PF00781 Diacylglycerol kinase catalytic domain CLI_RS01175 PF04055 Radical SAM superfamily CLI_RS01175 PF11842 Domain of unknown function (DUF3362) CLI_RS01175 PF08497 Radical SAM N-terminal CLI_RS01185 PF07486 Cell Wall Hydrolase CLI_RS01185 PF01471 Putative peptidoglycan binding domain CLI_RS01190 PF00291 Pyridoxal-phosphate dependent enzyme CLI_RS01195 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS01200 PF08331 Domain of unknown function (DUF1730) CLI_RS01210 PF00633 Helix-hairpin-helix motif CLI_RS01210 PF10576 Iron-sulfur binding domain of endonuclease III CLI_RS01210 PF00730 HhH-GPD superfamily base excision DNA repair protein CLI_RS01215 PF00390 Malic enzyme, N-terminal domain CLI_RS01215 PF03949 Malic enzyme, NAD binding domain CLI_RS01220 PF18146 Damage-inducible protein CinA KH domain CLI_RS01220 PF00994 Probable molybdopterin binding domain CLI_RS01220 PF02464 Competence-damaged protein CLI_RS01225 PF12146 Serine aminopeptidase, S33 CLI_RS01230 PF05343 M42 glutamyl aminopeptidase CLI_RS01235 PF04294 VanW like protein CLI_RS01240 PF04294 VanW like protein CLI_RS01245 PF04055 Radical SAM superfamily CLI_RS01250 PF00588 SpoU rRNA Methylase family CLI_RS01255 PF02645 Uncharacterised protein, DegV family COG1307 CLI_RS01260 PF02608 ABC transporter substrate-binding protein PnrA-like CLI_RS01265 PF00005 ABC transporter CLI_RS01270 PF02653 Branched-chain amino acid transport system / permease component CLI_RS01275 PF02653 Branched-chain amino acid transport system / permease component CLI_RS01280 PF01522 Polysaccharide deacetylase CLI_RS01285 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLI_RS01285 PF04963 Sigma-54 factor, core binding domain CLI_RS01285 PF04552 Sigma-54, DNA binding domain CLI_RS01290 PF04198 Putative sugar-binding domain CLI_RS01295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLI_RS01295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLI_RS01300 PF00162 Phosphoglycerate kinase CLI_RS01305 PF00121 Triosephosphate isomerase CLI_RS01310 PF01676 Metalloenzyme superfamily CLI_RS01310 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLI_RS01315 PF03952 Enolase, N-terminal domain CLI_RS01315 PF00113 Enolase, C-terminal TIM barrel domain CLI_RS01325 PF17876 Cold shock domain CLI_RS01325 PF00773 RNB domain CLI_RS01325 PF08206 Ribonuclease B OB domain CLI_RS01325 PF00575 S1 RNA binding domain CLI_RS01330 PF01975 Survival protein SurE CLI_RS01335 PF01668 SmpB protein CLI_RS01355 PF08031 Berberine and berberine like CLI_RS01355 PF01565 FAD binding domain CLI_RS01360 PF01209 ubiE/COQ5 methyltransferase family CLI_RS01385 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLI_RS01390 PF00669 Bacterial flagellin N-terminal helical region CLI_RS01390 PF00700 Bacterial flagellin C-terminal helical region CLI_RS01400 PF07883 Cupin domain CLI_RS01405 PF00072 Response regulator receiver domain CLI_RS01405 PF00486 Transcriptional regulatory protein, C terminal CLI_RS01410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01415 PF00005 ABC transporter CLI_RS01425 PF00561 alpha/beta hydrolase fold CLI_RS01440 PF03949 Malic enzyme, NAD binding domain CLI_RS01440 PF00390 Malic enzyme, N-terminal domain CLI_RS01445 PF03812 2-keto-3-deoxygluconate permease CLI_RS01450 PF00989 PAS fold CLI_RS01450 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLI_RS01450 PF17203 Single cache domain 3 CLI_RS01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01455 PF00072 Response regulator receiver domain CLI_RS01460 PF00324 Amino acid permease CLI_RS01470 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS01490 PF01872 RibD C-terminal domain CLI_RS01495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLI_RS01495 PF00929 Exonuclease CLI_RS01495 PF11490 DNA polymerase III polC-type N-terminus II CLI_RS01495 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLI_RS01495 PF02811 PHP domain CLI_RS01495 PF01336 OB-fold nucleic acid binding domain CLI_RS01495 PF14480 DNA polymerase III polC-type N-terminus I CLI_RS01495 PF14579 Helix-hairpin-helix motif CLI_RS01505 PF00857 Isochorismatase family CLI_RS01510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLI_RS01510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLI_RS01520 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI_RS01520 PF01799 [2Fe-2S] binding domain CLI_RS01530 PF02683 Cytochrome C biogenesis protein transmembrane region CLI_RS01535 PF00578 AhpC/TSA family CLI_RS01540 PF00486 Transcriptional regulatory protein, C terminal CLI_RS01540 PF00072 Response regulator receiver domain CLI_RS01545 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS01545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01545 PF00672 HAMP domain CLI_RS01550 PF01565 FAD binding domain CLI_RS01550 PF08031 Berberine and berberine like CLI_RS01555 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLI_RS01555 PF02056 Family 4 glycosyl hydrolase CLI_RS01560 PF02378 Phosphotransferase system, EIIC CLI_RS01560 PF00367 phosphotransferase system, EIIB CLI_RS01565 PF01418 Helix-turn-helix domain, rpiR family CLI_RS01565 PF01380 SIS domain CLI_RS01575 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS01580 PF00486 Transcriptional regulatory protein, C terminal CLI_RS01580 PF00072 Response regulator receiver domain CLI_RS01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01590 PF00005 ABC transporter CLI_RS01595 PF02687 FtsX-like permease family CLI_RS01605 PF02378 Phosphotransferase system, EIIC CLI_RS01605 PF00367 phosphotransferase system, EIIB CLI_RS01610 PF02056 Family 4 glycosyl hydrolase CLI_RS01610 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLI_RS01615 PF02378 Phosphotransferase system, EIIC CLI_RS01615 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS01615 PF00367 phosphotransferase system, EIIB CLI_RS01630 PF00313 'Cold-shock' DNA-binding domain CLI_RS01640 PF02082 Transcriptional regulator CLI_RS01645 PF01323 DSBA-like thioredoxin domain CLI_RS01650 PF13460 NAD(P)H-binding CLI_RS01655 PF01380 SIS domain CLI_RS01655 PF01418 Helix-turn-helix domain, rpiR family CLI_RS01660 PF00367 phosphotransferase system, EIIB CLI_RS01660 PF02378 Phosphotransferase system, EIIC CLI_RS01665 PF02056 Family 4 glycosyl hydrolase CLI_RS01665 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLI_RS01670 PF00367 phosphotransferase system, EIIB CLI_RS01670 PF02378 Phosphotransferase system, EIIC CLI_RS01670 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS01675 PF00920 Dehydratase family CLI_RS01690 PF13382 Adenine deaminase C-terminal domain CLI_RS01690 PF01979 Amidohydrolase family CLI_RS01695 PF00486 Transcriptional regulatory protein, C terminal CLI_RS01695 PF00072 Response regulator receiver domain CLI_RS01700 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS01700 PF00672 HAMP domain CLI_RS01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01705 PF00535 Glycosyl transferase family 2 CLI_RS01710 PF04138 GtrA-like protein CLI_RS01715 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CLI_RS01720 PF12852 Cupin CLI_RS01720 PF12833 Helix-turn-helix domain CLI_RS01730 PF01032 FecCD transport family CLI_RS01735 PF00005 ABC transporter CLI_RS01750 PF01497 Periplasmic binding protein CLI_RS01755 PF01497 Periplasmic binding protein CLI_RS01760 PF01032 FecCD transport family CLI_RS01765 PF01032 FecCD transport family CLI_RS01770 PF00005 ABC transporter CLI_RS01775 PF00664 ABC transporter transmembrane region CLI_RS01775 PF00005 ABC transporter CLI_RS01780 PF00860 Permease family CLI_RS01785 PF00156 Phosphoribosyl transferase domain CLI_RS01790 PF00486 Transcriptional regulatory protein, C terminal CLI_RS01790 PF00072 Response regulator receiver domain CLI_RS01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01800 PF02673 Bacitracin resistance protein BacA CLI_RS01805 PF00005 ABC transporter CLI_RS01810 PF02687 FtsX-like permease family CLI_RS01825 PF03788 LrgA family CLI_RS01830 PF04172 LrgB-like family CLI_RS01845 PF08903 Domain of unknown function (DUF1846) CLI_RS01860 PF04647 Accessory gene regulator B CLI_RS01870 PF00563 EAL domain CLI_RS01870 PF01590 GAF domain CLI_RS01870 PF00360 Phytochrome region CLI_RS01870 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS01885 PF00989 PAS fold CLI_RS01885 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS01885 PF18698 Histidine kinase sensor domain CLI_RS01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01885 PF00672 HAMP domain CLI_RS01895 PF04647 Accessory gene regulator B CLI_RS01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01905 PF00989 PAS fold CLI_RS01905 PF00672 HAMP domain CLI_RS01905 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS01905 PF18698 Histidine kinase sensor domain CLI_RS01910 PF01171 PP-loop family CLI_RS01915 PF06114 IrrE N-terminal-like domain CLI_RS01915 PF09856 Predicted transcriptional regulator (DUF2083) CLI_RS01915 PF01381 Helix-turn-helix CLI_RS01920 PF13520 Amino acid permease CLI_RS01925 PF00557 Metallopeptidase family M24 CLI_RS01925 PF01321 Creatinase/Prolidase N-terminal domain CLI_RS01930 PF00171 Aldehyde dehydrogenase family CLI_RS01930 PF00465 Iron-containing alcohol dehydrogenase CLI_RS01955 PF01569 PAP2 superfamily CLI_RS01960 PF01522 Polysaccharide deacetylase CLI_RS01965 PF00486 Transcriptional regulatory protein, C terminal CLI_RS01965 PF00072 Response regulator receiver domain CLI_RS01970 PF00672 HAMP domain CLI_RS01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS01970 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS01980 PF06962 Putative rRNA methylase CLI_RS01985 PF09335 SNARE associated Golgi protein CLI_RS01990 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS01990 PF00563 EAL domain CLI_RS01990 PF03707 Bacterial signalling protein N terminal repeat CLI_RS02010 PF03471 Transporter associated domain CLI_RS02010 PF00999 Sodium/hydrogen exchanger family CLI_RS02010 PF02080 TrkA-C domain CLI_RS02015 PF00266 Aminotransferase class-V CLI_RS02020 PF03601 Conserved hypothetical protein 698 CLI_RS02030 PF00486 Transcriptional regulatory protein, C terminal CLI_RS02030 PF00072 Response regulator receiver domain CLI_RS02035 PF00672 HAMP domain CLI_RS02035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS02035 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS02035 PF13426 PAS domain CLI_RS02040 PF00474 Sodium:solute symporter family CLI_RS02045 PF13237 4Fe-4S dicluster domain CLI_RS02045 PF13375 RnfC Barrel sandwich hybrid domain CLI_RS02045 PF10531 SLBB domain CLI_RS02045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS02050 PF03116 NQR2, RnfD, RnfE family CLI_RS02055 PF04205 FMN-binding domain CLI_RS02060 PF02508 Rnf-Nqr subunit, membrane protein CLI_RS02065 PF02508 Rnf-Nqr subunit, membrane protein CLI_RS02070 PF13187 4Fe-4S dicluster domain CLI_RS02070 PF00037 4Fe-4S binding domain CLI_RS02070 PF04060 Putative Fe-S cluster CLI_RS02090 PF02424 ApbE family CLI_RS02135 PF12849 PBP superfamily domain CLI_RS02140 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS02145 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS02150 PF00005 ABC transporter CLI_RS02160 PF13520 Amino acid permease CLI_RS02180 PF00436 Single-strand binding protein family CLI_RS02185 PF02659 Putative manganese efflux pump CLI_RS02190 PF01475 Ferric uptake regulator family CLI_RS02200 PF01966 HD domain CLI_RS02200 PF11871 Domain of unknown function (DUF3391) CLI_RS02205 PF01694 Rhomboid family CLI_RS02210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS02210 PF02743 Cache domain CLI_RS02210 PF00672 HAMP domain CLI_RS02215 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS02215 PF17862 AAA+ lid domain CLI_RS02215 PF01434 Peptidase family M41 CLI_RS02215 PF06480 FtsH Extracellular CLI_RS02225 PF00075 RNase H CLI_RS02260 PF10431 C-terminal, D2-small domain, of ClpB protein CLI_RS02260 PF02861 Clp amino terminal domain, pathogenicity island component CLI_RS02260 PF17871 AAA lid domain CLI_RS02260 PF07724 AAA domain (Cdc48 subfamily) CLI_RS02260 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS02265 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLI_RS02270 PF08245 Mur ligase middle domain CLI_RS02270 PF08353 Domain of unknown function (DUF1727) CLI_RS02275 PF01238 Phosphomannose isomerase type I CLI_RS02285 PF02673 Bacitracin resistance protein BacA CLI_RS02320 PF12706 Beta-lactamase superfamily domain CLI_RS02330 PF00682 HMGL-like CLI_RS02335 PF00330 Aconitase family (aconitate hydratase) CLI_RS02340 PF00180 Isocitrate/isopropylmalate dehydrogenase CLI_RS02340 PF18324 Hypothetical protein TT1725 CLI_RS02345 PF00005 ABC transporter CLI_RS02350 PF03553 Na+/H+ antiporter family CLI_RS02355 PF04070 Domain of unknown function (DUF378) CLI_RS02360 PF02261 Aspartate decarboxylase CLI_RS02365 PF02569 Pantoate-beta-alanine ligase CLI_RS02370 PF02548 Ketopantoate hydroxymethyltransferase CLI_RS02375 PF12705 PD-(D/E)XK nuclease superfamily CLI_RS02400 PF08361 MAATS-type transcriptional repressor, C-terminal region CLI_RS02400 PF00440 Bacterial regulatory proteins, tetR family CLI_RS02405 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLI_RS02410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI_RS02410 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS02410 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLI_RS02415 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CLI_RS02435 PF00580 UvrD/REP helicase N-terminal domain CLI_RS02435 PF12705 PD-(D/E)XK nuclease superfamily CLI_RS02435 PF13361 UvrD-like helicase C-terminal domain CLI_RS02440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS02440 PF17202 Single cache domain 3 CLI_RS02440 PF00672 HAMP domain CLI_RS02445 PF01546 Peptidase family M20/M25/M40 CLI_RS02445 PF07687 Peptidase dimerisation domain CLI_RS02450 PF01734 Patatin-like phospholipase CLI_RS02475 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS02480 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI_RS02485 PF01209 ubiE/COQ5 methyltransferase family CLI_RS02490 PF08668 HDOD domain CLI_RS02490 PF00563 EAL domain CLI_RS02495 PF02581 Thiamine monophosphate synthase CLI_RS02500 PF02110 Hydroxyethylthiazole kinase family CLI_RS02505 PF08543 Phosphomethylpyrimidine kinase CLI_RS02515 PF07478 D-ala D-ala ligase C-terminus CLI_RS02515 PF01820 D-ala D-ala ligase N-terminus CLI_RS02520 PF13458 Periplasmic binding protein CLI_RS02525 PF02653 Branched-chain amino acid transport system / permease component CLI_RS02530 PF02653 Branched-chain amino acid transport system / permease component CLI_RS02530 PF11862 Domain of unknown function (DUF3382) CLI_RS02535 PF00005 ABC transporter CLI_RS02535 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLI_RS02540 PF00005 ABC transporter CLI_RS02560 PF00392 Bacterial regulatory proteins, gntR family CLI_RS02560 PF00155 Aminotransferase class I and II CLI_RS02570 PF04536 TPM domain CLI_RS02575 PF00293 NUDIX domain CLI_RS02575 PF13344 Haloacid dehalogenase-like hydrolase CLI_RS02590 PF01209 ubiE/COQ5 methyltransferase family CLI_RS02595 PF13443 Cro/C1-type HTH DNA-binding domain CLI_RS02605 PF12320 Type 5 capsule protein repressor C-terminal domain CLI_RS02605 PF00149 Calcineurin-like phosphoesterase CLI_RS02610 PF13175 AAA ATPase domain CLI_RS02620 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLI_RS02620 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLI_RS02625 PF01022 Bacterial regulatory protein, arsR family CLI_RS02630 PF00403 Heavy-metal-associated domain CLI_RS02640 PF13638 PIN domain CLI_RS02640 PF02562 PhoH-like protein CLI_RS02645 PF09992 Phosphodiester glycosidase CLI_RS02645 PF12708 Pectate lyase superfamily protein CLI_RS02685 PF00005 ABC transporter CLI_RS02700 PF02163 Peptidase family M50 CLI_RS02710 PF03600 Citrate transporter CLI_RS02720 PF02390 Putative methyltransferase CLI_RS02730 PF08534 Redoxin CLI_RS02740 PF00072 Response regulator receiver domain CLI_RS02740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS02745 PF00877 NlpC/P60 family CLI_RS02750 PF12146 Serine aminopeptidase, S33 CLI_RS02755 PF00486 Transcriptional regulatory protein, C terminal CLI_RS02755 PF00072 Response regulator receiver domain CLI_RS02760 PF01966 HD domain CLI_RS02760 PF11871 Domain of unknown function (DUF3391) CLI_RS02765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS02765 PF00672 HAMP domain CLI_RS02765 PF02743 Cache domain CLI_RS02770 PF00072 Response regulator receiver domain CLI_RS02775 PF02403 Seryl-tRNA synthetase N-terminal domain CLI_RS02775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS02780 PF13307 Helicase C-terminal domain CLI_RS02780 PF06733 DEAD_2 CLI_RS02780 PF00270 DEAD/DEAH box helicase CLI_RS02795 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CLI_RS02795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLI_RS02800 PF06874 Firmicute fructose-1,6-bisphosphatase CLI_RS02810 PF01814 Hemerythrin HHE cation binding domain CLI_RS02825 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLI_RS02825 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLI_RS02840 PF13520 Amino acid permease CLI_RS02850 PF01037 Lrp/AsnC ligand binding domain CLI_RS02850 PF13404 AsnC-type helix-turn-helix domain CLI_RS02860 PF13520 Amino acid permease CLI_RS02865 PF13520 Amino acid permease CLI_RS02870 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS02875 PF00753 Metallo-beta-lactamase superfamily CLI_RS02875 PF03772 Competence protein CLI_RS02880 PF00689 Cation transporting ATPase, C-terminus CLI_RS02880 PF00690 Cation transporter/ATPase, N-terminus CLI_RS02885 PF02417 Chromate transporter CLI_RS02890 PF02417 Chromate transporter CLI_RS02895 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLI_RS02905 PF00795 Carbon-nitrogen hydrolase CLI_RS02905 PF02540 NAD synthase CLI_RS02915 PF01145 SPFH domain / Band 7 family CLI_RS02925 PF00557 Metallopeptidase family M24 CLI_RS02925 PF05195 Aminopeptidase P, N-terminal domain CLI_RS02965 PF12146 Serine aminopeptidase, S33 CLI_RS02975 PF02554 Carbon starvation protein CstA CLI_RS02975 PF13722 5TM C-terminal transporter carbon starvation CstA CLI_RS02985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS02985 PF02743 Cache domain CLI_RS02985 PF00672 HAMP domain CLI_RS02990 PF00005 ABC transporter CLI_RS02990 PF12848 ABC transporter CLI_RS02990 PF16326 ABC transporter C-terminal domain CLI_RS02995 PF01741 Large-conductance mechanosensitive channel, MscL CLI_RS03010 PF01043 SecA preprotein cross-linking domain CLI_RS03010 PF07517 SecA DEAD-like domain CLI_RS03010 PF07516 SecA Wing and Scaffold domain CLI_RS03010 PF02810 SEC-C motif CLI_RS03015 PF00392 Bacterial regulatory proteins, gntR family CLI_RS03020 PF00005 ABC transporter CLI_RS03030 PF08402 TOBE domain CLI_RS03030 PF00005 ABC transporter CLI_RS03035 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS03040 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS03050 PF00375 Sodium:dicarboxylate symporter family CLI_RS03060 PF00583 Acetyltransferase (GNAT) family CLI_RS03070 PF00805 Pentapeptide repeats (8 copies) CLI_RS03075 PF01588 Putative tRNA binding domain CLI_RS03075 PF09334 tRNA synthetases class I (M) CLI_RS03095 PF10502 Signal peptidase, peptidase S26 CLI_RS03105 PF00072 Response regulator receiver domain CLI_RS03105 PF04397 LytTr DNA-binding domain CLI_RS03145 PF00664 ABC transporter transmembrane region CLI_RS03145 PF00005 ABC transporter CLI_RS03165 PF00005 ABC transporter CLI_RS03185 PF02645 Uncharacterised protein, DegV family COG1307 CLI_RS03190 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLI_RS03200 PF00884 Sulfatase CLI_RS03205 PF00158 Sigma-54 interaction domain CLI_RS03205 PF13426 PAS domain CLI_RS03205 PF02954 Bacterial regulatory protein, Fis family CLI_RS03210 PF01773 Na+ dependent nucleoside transporter N-terminus CLI_RS03210 PF07662 Na+ dependent nucleoside transporter C-terminus CLI_RS03210 PF07670 Nucleoside recognition CLI_RS03215 PF00152 tRNA synthetases class II (D, K and N) CLI_RS03215 PF01336 OB-fold nucleic acid binding domain CLI_RS03240 PF12833 Helix-turn-helix domain CLI_RS03240 PF06445 GyrI-like small molecule binding domain CLI_RS03265 PF00486 Transcriptional regulatory protein, C terminal CLI_RS03265 PF00072 Response regulator receiver domain CLI_RS03270 PF02702 Osmosensitive K+ channel His kinase sensor domain CLI_RS03270 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS03270 PF13493 Domain of unknown function (DUF4118) CLI_RS03275 PF02557 D-alanyl-D-alanine carboxypeptidase CLI_RS03280 PF00486 Transcriptional regulatory protein, C terminal CLI_RS03280 PF00072 Response regulator receiver domain CLI_RS03285 PF00989 PAS fold CLI_RS03285 PF00672 HAMP domain CLI_RS03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS03285 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS03285 PF18698 Histidine kinase sensor domain CLI_RS03295 PF08664 YcbB domain CLI_RS03295 PF00072 Response regulator receiver domain CLI_RS03300 PF00989 PAS fold CLI_RS03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS03300 PF18698 Histidine kinase sensor domain CLI_RS03300 PF00672 HAMP domain CLI_RS03300 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS03305 PF01098 Cell cycle protein CLI_RS03320 PF00664 ABC transporter transmembrane region CLI_RS03320 PF00005 ABC transporter CLI_RS03325 PF00302 Chloramphenicol acetyltransferase CLI_RS03330 PF08360 QacR-like protein, C-terminal region CLI_RS03330 PF00440 Bacterial regulatory proteins, tetR family CLI_RS03340 PF01588 Putative tRNA binding domain CLI_RS03345 PF06719 AraC-type transcriptional regulator N-terminus CLI_RS03345 PF12833 Helix-turn-helix domain CLI_RS03350 PF01381 Helix-turn-helix CLI_RS03365 PF00005 ABC transporter CLI_RS03375 PF07687 Peptidase dimerisation domain CLI_RS03375 PF01546 Peptidase family M20/M25/M40 CLI_RS03380 PF01713 Smr domain CLI_RS03380 PF00488 MutS domain V CLI_RS03400 PF04304 Protein of unknown function (DUF454) CLI_RS03420 PF00392 Bacterial regulatory proteins, gntR family CLI_RS03420 PF00155 Aminotransferase class I and II CLI_RS03430 PF00271 Helicase conserved C-terminal domain CLI_RS03430 PF00270 DEAD/DEAH box helicase CLI_RS03445 PF07690 Major Facilitator Superfamily CLI_RS03455 PF00005 ABC transporter CLI_RS03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI_RS03480 PF03466 LysR substrate binding domain CLI_RS03490 PF00874 PRD domain CLI_RS03490 PF03123 CAT RNA binding domain CLI_RS03495 PF02378 Phosphotransferase system, EIIC CLI_RS03495 PF00367 phosphotransferase system, EIIB CLI_RS03495 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS03500 PF02811 PHP domain CLI_RS03505 PF00027 Cyclic nucleotide-binding domain CLI_RS03505 PF13545 Crp-like helix-turn-helix domain CLI_RS03510 PF00258 Flavodoxin CLI_RS03510 PF00301 Rubredoxin CLI_RS03510 PF00753 Metallo-beta-lactamase superfamily CLI_RS03515 PF01814 Hemerythrin HHE cation binding domain CLI_RS03515 PF04405 Domain of Unknown function (DUF542) CLI_RS03525 PF00117 Glutamine amidotransferase class-I CLI_RS03525 PF00958 GMP synthase C terminal domain CLI_RS03525 PF13302 Acetyltransferase (GNAT) domain CLI_RS03525 PF13673 Acetyltransferase (GNAT) domain CLI_RS03525 PF03352 Methyladenine glycosylase CLI_RS03550 PF02653 Branched-chain amino acid transport system / permease component CLI_RS03555 PF00005 ABC transporter CLI_RS03565 PF03965 Penicillinase repressor CLI_RS03590 PF01207 Dihydrouridine synthase (Dus) CLI_RS03595 PF01272 Transcription elongation factor, GreA/GreB, C-term CLI_RS03595 PF03449 Transcription elongation factor, N-terminal CLI_RS03615 PF01032 FecCD transport family CLI_RS03620 PF01032 FecCD transport family CLI_RS03625 PF00005 ABC transporter CLI_RS03630 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLI_RS03635 PF04324 BFD-like [2Fe-2S] binding domain CLI_RS03635 PF00148 Nitrogenase component 1 type Oxidoreductase CLI_RS03645 PF02743 Cache domain CLI_RS03645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS03645 PF00672 HAMP domain CLI_RS03660 PF01571 Aminomethyltransferase folate-binding domain CLI_RS03660 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLI_RS03665 PF01597 Glycine cleavage H-protein CLI_RS03670 PF02347 Glycine cleavage system P-protein CLI_RS03675 PF02347 Glycine cleavage system P-protein CLI_RS03680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS03680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI_RS03685 PF03099 Biotin/lipoate A/B protein ligase family CLI_RS03685 PF10437 Bacterial lipoate protein ligase C-terminus CLI_RS03715 PF12833 Helix-turn-helix domain CLI_RS03740 PF00486 Transcriptional regulatory protein, C terminal CLI_RS03740 PF00072 Response regulator receiver domain CLI_RS03745 PF16736 Single Cache-like CLI_RS03745 PF00989 PAS fold CLI_RS03745 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS03750 PF12704 MacB-like periplasmic core domain CLI_RS03750 PF00005 ABC transporter CLI_RS03750 PF02687 FtsX-like permease family CLI_RS03755 PF02687 FtsX-like permease family CLI_RS03755 PF12704 MacB-like periplasmic core domain CLI_RS03760 PF01047 MarR family CLI_RS03775 PF13411 MerR HTH family regulatory protein CLI_RS03790 PF00465 Iron-containing alcohol dehydrogenase CLI_RS03795 PF06100 MCRA family CLI_RS03800 PF00005 ABC transporter CLI_RS03815 PF00248 Aldo/keto reductase family CLI_RS03820 PF00005 ABC transporter CLI_RS03830 PF00892 EamA-like transporter family CLI_RS03860 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLI_RS03860 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLI_RS03865 PF02743 Cache domain CLI_RS03865 PF00672 HAMP domain CLI_RS03865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS03880 PF00005 ABC transporter CLI_RS03880 PF12848 ABC transporter CLI_RS03885 PF13280 WYL domain CLI_RS03885 PF08279 HTH domain CLI_RS03900 PF00291 Pyridoxal-phosphate dependent enzyme CLI_RS03905 PF02664 S-Ribosylhomocysteinase (LuxS) CLI_RS03910 PF01053 Cys/Met metabolism PLP-dependent enzyme CLI_RS03915 PF01209 ubiE/COQ5 methyltransferase family CLI_RS03925 PF00704 Glycosyl hydrolases family 18 CLI_RS03925 PF06483 Chitinase C CLI_RS03955 PF01381 Helix-turn-helix CLI_RS04005 PF01022 Bacterial regulatory protein, arsR family CLI_RS04010 PF06953 Arsenical resistance operon trans-acting repressor ArsD CLI_RS04015 PF02374 Anion-transporting ATPase CLI_RS04020 PF01758 Sodium Bile acid symporter family CLI_RS04035 PF01022 Bacterial regulatory protein, arsR family CLI_RS04045 PF00106 short chain dehydrogenase CLI_RS04045 PF00300 Histidine phosphatase superfamily (branch 1) CLI_RS04080 PF08470 Nontoxic nonhaemagglutinin C-terminal CLI_RS04080 PF07953 Clostridium neurotoxin, N-terminal receptor binding CLI_RS04080 PF01742 Clostridial neurotoxin zinc protease CLI_RS04085 PF01742 Clostridial neurotoxin zinc protease CLI_RS04085 PF07951 Clostridium neurotoxin, C-terminal receptor binding CLI_RS04085 PF07953 Clostridium neurotoxin, N-terminal receptor binding CLI_RS04085 PF07952 Clostridium neurotoxin, Translocation domain CLI_RS04110 PF01547 Bacterial extracellular solute-binding protein CLI_RS04115 PF08543 Phosphomethylpyrimidine kinase CLI_RS04115 PF02581 Thiamine monophosphate synthase CLI_RS04130 PF00005 ABC transporter CLI_RS04140 PF00486 Transcriptional regulatory protein, C terminal CLI_RS04140 PF00072 Response regulator receiver domain CLI_RS04145 PF00005 ABC transporter CLI_RS04155 PF12833 Helix-turn-helix domain CLI_RS04155 PF06445 GyrI-like small molecule binding domain CLI_RS04160 PF13426 PAS domain CLI_RS04160 PF00672 HAMP domain CLI_RS04160 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS04160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS04175 PF00005 ABC transporter CLI_RS04175 PF02687 FtsX-like permease family CLI_RS04175 PF12704 MacB-like periplasmic core domain CLI_RS04190 PF00072 Response regulator receiver domain CLI_RS04190 PF00486 Transcriptional regulatory protein, C terminal CLI_RS04195 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS04195 PF00672 HAMP domain CLI_RS04205 PF08141 Small acid-soluble spore protein H family CLI_RS04215 PF01113 Dihydrodipicolinate reductase, N-terminus CLI_RS04215 PF05173 Dihydrodipicolinate reductase, C-terminus CLI_RS04220 PF00581 Rhodanese-like domain CLI_RS04260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLI_RS04265 PF00144 Beta-lactamase CLI_RS04270 PF01381 Helix-turn-helix CLI_RS04275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLI_RS04290 PF01979 Amidohydrolase family CLI_RS04295 PF05525 Branched-chain amino acid transport protein CLI_RS04300 PF05525 Branched-chain amino acid transport protein CLI_RS04305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS04305 PF00672 HAMP domain CLI_RS04305 PF02743 Cache domain CLI_RS04315 PF07664 Ferrous iron transport protein B C terminus CLI_RS04315 PF17910 FeoB cytosolic helical domain CLI_RS04315 PF02421 Ferrous iron transport protein B CLI_RS04315 PF07670 Nucleoside recognition CLI_RS04320 PF07670 Nucleoside recognition CLI_RS04320 PF02421 Ferrous iron transport protein B CLI_RS04320 PF17910 FeoB cytosolic helical domain CLI_RS04320 PF07664 Ferrous iron transport protein B C terminus CLI_RS04325 PF00300 Histidine phosphatase superfamily (branch 1) CLI_RS04330 PF04294 VanW like protein CLI_RS04335 PF02654 Cobalamin-5-phosphate synthase CLI_RS04370 PF01242 6-pyruvoyl tetrahydropterin synthase CLI_RS04375 PF00809 Pterin binding enzyme CLI_RS04380 PF13684 Dihydroxyacetone kinase family CLI_RS04380 PF02734 DAK2 domain CLI_RS04385 PF02152 Dihydroneopterin aldolase CLI_RS04385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLI_RS04390 PF00011 Hsp20/alpha crystallin family CLI_RS04395 PF13411 MerR HTH family regulatory protein CLI_RS04400 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI_RS04405 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI_RS04415 PF08281 Sigma-70, region 4 CLI_RS04415 PF04542 Sigma-70 region 2 CLI_RS04430 PF08386 TAP-like protein CLI_RS04430 PF00561 alpha/beta hydrolase fold CLI_RS04440 PF04463 Protein of unknown function (DUF523) CLI_RS04450 PF01037 Lrp/AsnC ligand binding domain CLI_RS04465 PF00005 ABC transporter CLI_RS04505 PF04229 GrpB protein CLI_RS04505 PF13673 Acetyltransferase (GNAT) domain CLI_RS04515 PF17954 Quercetinase C-terminal cupin domain CLI_RS04515 PF02678 Pirin CLI_RS04520 PF01638 HxlR-like helix-turn-helix CLI_RS04525 PF00881 Nitroreductase family CLI_RS04535 PF00190 Cupin CLI_RS04540 PF03641 Possible lysine decarboxylase CLI_RS04550 PF03466 LysR substrate binding domain CLI_RS04550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI_RS04560 PF13419 Haloacid dehalogenase-like hydrolase CLI_RS04585 PF08279 HTH domain CLI_RS04585 PF13280 WYL domain CLI_RS04605 PF01327 Polypeptide deformylase CLI_RS04610 PF00392 Bacterial regulatory proteins, gntR family CLI_RS04610 PF00155 Aminotransferase class I and II CLI_RS04615 PF06445 GyrI-like small molecule binding domain CLI_RS04615 PF12833 Helix-turn-helix domain CLI_RS04620 PF00881 Nitroreductase family CLI_RS04630 PF03123 CAT RNA binding domain CLI_RS04630 PF00874 PRD domain CLI_RS04635 PF02378 Phosphotransferase system, EIIC CLI_RS04635 PF00367 phosphotransferase system, EIIB CLI_RS04635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS04640 PF00232 Glycosyl hydrolase family 1 CLI_RS04650 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLI_RS04650 PF00953 Glycosyl transferase family 4 CLI_RS04660 PF00072 Response regulator receiver domain CLI_RS04660 PF00486 Transcriptional regulatory protein, C terminal CLI_RS04665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS04665 PF18698 Histidine kinase sensor domain CLI_RS04665 PF00672 HAMP domain CLI_RS04665 PF00989 PAS fold CLI_RS04665 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS04670 PF00005 ABC transporter CLI_RS04675 PF00005 ABC transporter CLI_RS04675 PF12704 MacB-like periplasmic core domain CLI_RS04675 PF02687 FtsX-like permease family CLI_RS04685 PF06463 Molybdenum Cofactor Synthesis C CLI_RS04685 PF04055 Radical SAM superfamily CLI_RS04695 PF13411 MerR HTH family regulatory protein CLI_RS04695 PF07739 TipAS antibiotic-recognition domain CLI_RS04700 PF00936 BMC domain CLI_RS04715 PF12833 Helix-turn-helix domain CLI_RS04715 PF06445 GyrI-like small molecule binding domain CLI_RS04725 PF06445 GyrI-like small molecule binding domain CLI_RS04725 PF13411 MerR HTH family regulatory protein CLI_RS04730 PF00892 EamA-like transporter family CLI_RS04735 PF04229 GrpB protein CLI_RS04740 PF01476 LysM domain CLI_RS04740 PF03734 L,D-transpeptidase catalytic domain CLI_RS04775 PF02687 FtsX-like permease family CLI_RS04775 PF00005 ABC transporter CLI_RS04775 PF12704 MacB-like periplasmic core domain CLI_RS04780 PF00072 Response regulator receiver domain CLI_RS04780 PF00486 Transcriptional regulatory protein, C terminal CLI_RS04785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS04785 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS04785 PF00989 PAS fold CLI_RS04785 PF16736 Single Cache-like CLI_RS04790 PF02632 BioY family CLI_RS04800 PF13302 Acetyltransferase (GNAT) domain CLI_RS04805 PF00717 Peptidase S24-like CLI_RS04805 PF01726 LexA DNA binding domain CLI_RS04815 PF13411 MerR HTH family regulatory protein CLI_RS04815 PF07739 TipAS antibiotic-recognition domain CLI_RS04830 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLI_RS04835 PF03186 CobD/Cbib protein CLI_RS04840 PF00155 Aminotransferase class I and II CLI_RS04845 PF01891 Cobalt uptake substrate-specific transmembrane region CLI_RS04850 PF02553 Cobalt transport protein component CbiN CLI_RS04865 PF03900 Porphobilinogen deaminase, C-terminal domain CLI_RS04865 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLI_RS04870 PF02602 Uroporphyrinogen-III synthase HemD CLI_RS04870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI_RS04880 PF00490 Delta-aminolevulinic acid dehydratase CLI_RS04885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLI_RS04885 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLI_RS04895 PF12464 Maltose acetyltransferase CLI_RS04895 PF14602 Hexapeptide repeat of succinyl-transferase CLI_RS04900 PF02570 Precorrin-8X methylmutase CLI_RS04905 PF02463 RecF/RecN/SMC N terminal domain CLI_RS04920 PF00583 Acetyltransferase (GNAT) family CLI_RS04930 PF00881 Nitroreductase family CLI_RS04940 PF04229 GrpB protein CLI_RS04945 PF01888 CbiD CLI_RS04960 PF05175 Methyltransferase small domain CLI_RS05005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI_RS05010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI_RS05015 PF01890 Cobalamin synthesis G C-terminus CLI_RS05015 PF11761 Cobalamin biosynthesis central region CLI_RS05015 PF11760 Cobalamin synthesis G N-terminal CLI_RS05020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI_RS05020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLI_RS05025 PF02571 Precorrin-6x reductase CbiJ/CobK CLI_RS05035 PF06180 Cobalt chelatase (CbiK) CLI_RS05040 PF00288 GHMP kinases N terminal domain CLI_RS05045 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CLI_RS05045 PF12557 Cob(I)alamin adenosyltransferase N terminal CLI_RS05055 PF01226 Formate/nitrite transporter CLI_RS05060 PF17179 4Fe-4S dicluster domain CLI_RS05065 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLI_RS05065 PF00175 Oxidoreductase NAD-binding domain CLI_RS05070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLI_RS05070 PF13187 4Fe-4S dicluster domain CLI_RS05070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLI_RS05090 PF00005 ABC transporter CLI_RS05100 PF00486 Transcriptional regulatory protein, C terminal CLI_RS05100 PF00072 Response regulator receiver domain CLI_RS05105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS05105 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS05110 PF00005 ABC transporter CLI_RS05115 PF01032 FecCD transport family CLI_RS05120 PF01497 Periplasmic binding protein CLI_RS05125 PF02733 Dak1 domain CLI_RS05130 PF00465 Iron-containing alcohol dehydrogenase CLI_RS05135 PF12833 Helix-turn-helix domain CLI_RS05135 PF07883 Cupin domain CLI_RS05140 PF13673 Acetyltransferase (GNAT) domain CLI_RS05160 PF00248 Aldo/keto reductase family CLI_RS05165 PF04993 TfoX N-terminal domain CLI_RS05180 PF00962 Adenosine/AMP deaminase CLI_RS05185 PF01061 ABC-2 type transporter CLI_RS05190 PF01061 ABC-2 type transporter CLI_RS05205 PF00570 HRDC domain CLI_RS05205 PF09382 RQC domain CLI_RS05205 PF00270 DEAD/DEAH box helicase CLI_RS05205 PF00271 Helicase conserved C-terminal domain CLI_RS05205 PF16124 RecQ zinc-binding CLI_RS05210 PF02915 Rubrerythrin CLI_RS05215 PF12850 Calcineurin-like phosphoesterase superfamily domain CLI_RS05220 PF00072 Response regulator receiver domain CLI_RS05220 PF00486 Transcriptional regulatory protein, C terminal CLI_RS05245 PF01434 Peptidase family M41 CLI_RS05245 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS05245 PF17862 AAA+ lid domain CLI_RS05245 PF06480 FtsH Extracellular CLI_RS05255 PF02652 L-lactate permease CLI_RS05260 PF09861 Lactate racemase N-terminal domain CLI_RS05265 PF01012 Electron transfer flavoprotein domain CLI_RS05270 PF01012 Electron transfer flavoprotein domain CLI_RS05270 PF00766 Electron transfer flavoprotein FAD-binding domain CLI_RS05275 PF02913 FAD linked oxidases, C-terminal domain CLI_RS05275 PF01565 FAD binding domain CLI_RS05300 PF00155 Aminotransferase class I and II CLI_RS05310 PF01047 MarR family CLI_RS05315 PF13411 MerR HTH family regulatory protein CLI_RS05315 PF06445 GyrI-like small molecule binding domain CLI_RS05325 PF01336 OB-fold nucleic acid binding domain CLI_RS05325 PF00152 tRNA synthetases class II (D, K and N) CLI_RS05330 PF00664 ABC transporter transmembrane region CLI_RS05330 PF00005 ABC transporter CLI_RS05360 PF13419 Haloacid dehalogenase-like hydrolase CLI_RS05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI_RS05375 PF03466 LysR substrate binding domain CLI_RS05380 PF08281 Sigma-70, region 4 CLI_RS05380 PF04542 Sigma-70 region 2 CLI_RS05390 PF14268 YoaP-like CLI_RS05390 PF00583 Acetyltransferase (GNAT) family CLI_RS05400 PF07664 Ferrous iron transport protein B C terminus CLI_RS05400 PF02421 Ferrous iron transport protein B CLI_RS05400 PF07670 Nucleoside recognition CLI_RS05400 PF04023 FeoA domain CLI_RS05400 PF17910 FeoB cytosolic helical domain CLI_RS05405 PF07670 Nucleoside recognition CLI_RS05405 PF07664 Ferrous iron transport protein B C terminus CLI_RS05405 PF17910 FeoB cytosolic helical domain CLI_RS05405 PF02421 Ferrous iron transport protein B CLI_RS05415 PF04239 Protein of unknown function (DUF421) CLI_RS05425 PF02557 D-alanyl-D-alanine carboxypeptidase CLI_RS05440 PF00557 Metallopeptidase family M24 CLI_RS05440 PF01321 Creatinase/Prolidase N-terminal domain CLI_RS05445 PF00072 Response regulator receiver domain CLI_RS05445 PF00486 Transcriptional regulatory protein, C terminal CLI_RS05450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS05450 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS05450 PF16736 Single Cache-like CLI_RS05450 PF00989 PAS fold CLI_RS05460 PF00067 Cytochrome P450 CLI_RS05480 PF00486 Transcriptional regulatory protein, C terminal CLI_RS05480 PF00072 Response regulator receiver domain CLI_RS05485 PF00672 HAMP domain CLI_RS05485 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS05485 PF18698 Histidine kinase sensor domain CLI_RS05485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS05485 PF00989 PAS fold CLI_RS05495 PF12833 Helix-turn-helix domain CLI_RS05495 PF12852 Cupin CLI_RS05500 PF01032 FecCD transport family CLI_RS05505 PF01032 FecCD transport family CLI_RS05510 PF00005 ABC transporter CLI_RS05515 PF01497 Periplasmic binding protein CLI_RS05520 PF12833 Helix-turn-helix domain CLI_RS05525 PF00005 ABC transporter CLI_RS05525 PF00664 ABC transporter transmembrane region CLI_RS05530 PF00664 ABC transporter transmembrane region CLI_RS05530 PF00005 ABC transporter CLI_RS05540 PF04397 LytTr DNA-binding domain CLI_RS05540 PF00072 Response regulator receiver domain CLI_RS05555 PF00704 Glycosyl hydrolases family 18 CLI_RS05555 PF00041 Fibronectin type III domain CLI_RS05565 PF03190 Protein of unknown function, DUF255 CLI_RS05570 PF11728 Putative aromatic acid exporter C-terminal domain CLI_RS05570 PF06081 Aromatic acid exporter family member 1 CLI_RS05590 PF16326 ABC transporter C-terminal domain CLI_RS05590 PF12848 ABC transporter CLI_RS05590 PF00005 ABC transporter CLI_RS05610 PF01266 FAD dependent oxidoreductase CLI_RS05615 PF04324 BFD-like [2Fe-2S] binding domain CLI_RS05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS05625 PF07690 Major Facilitator Superfamily CLI_RS05630 PF00750 tRNA synthetases class I (R) CLI_RS05630 PF05746 DALR anticodon binding domain CLI_RS05630 PF03485 Arginyl tRNA synthetase N terminal domain CLI_RS05640 PF00155 Aminotransferase class I and II CLI_RS05645 PF00571 CBS domain CLI_RS05645 PF03448 MgtE intracellular N domain CLI_RS05645 PF01769 Divalent cation transporter CLI_RS05655 PF07664 Ferrous iron transport protein B C terminus CLI_RS05655 PF07670 Nucleoside recognition CLI_RS05655 PF02421 Ferrous iron transport protein B CLI_RS05655 PF17910 FeoB cytosolic helical domain CLI_RS05675 PF02839 Carbohydrate binding domain CLI_RS05685 PF00005 ABC transporter CLI_RS05685 PF09383 NIL domain CLI_RS05690 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS05695 PF03180 NLPA lipoprotein CLI_RS05700 PF03180 NLPA lipoprotein CLI_RS05705 PF01546 Peptidase family M20/M25/M40 CLI_RS05705 PF07687 Peptidase dimerisation domain CLI_RS05725 PF07729 FCD domain CLI_RS05725 PF00392 Bacterial regulatory proteins, gntR family CLI_RS05730 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLI_RS05730 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLI_RS05740 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLI_RS05745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLI_RS05745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLI_RS05750 PF00753 Metallo-beta-lactamase superfamily CLI_RS05750 PF10996 Beta-Casp domain CLI_RS05750 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLI_RS05760 PF01743 Poly A polymerase head domain CLI_RS05760 PF01966 HD domain CLI_RS05760 PF12627 Probable RNA and SrmB- binding site of polymerase A CLI_RS05765 PF00171 Aldehyde dehydrogenase family CLI_RS05770 PF01235 Sodium:alanine symporter family CLI_RS05775 PF01235 Sodium:alanine symporter family CLI_RS05780 PF01047 MarR family CLI_RS05785 PF01554 MatE CLI_RS05800 PF13416 Bacterial extracellular solute-binding protein CLI_RS05810 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS05815 PF08402 TOBE domain CLI_RS05815 PF00005 ABC transporter CLI_RS05825 PF13302 Acetyltransferase (GNAT) domain CLI_RS05840 PF03956 Lysine exporter LysO CLI_RS05845 PF14602 Hexapeptide repeat of succinyl-transferase CLI_RS05845 PF12464 Maltose acetyltransferase CLI_RS05850 PF02237 Biotin protein ligase C terminal domain CLI_RS05850 PF08279 HTH domain CLI_RS05850 PF03099 Biotin/lipoate A/B protein ligase family CLI_RS05865 PF00989 PAS fold CLI_RS05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS05865 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS05865 PF00672 HAMP domain CLI_RS05865 PF18698 Histidine kinase sensor domain CLI_RS05880 PF00571 CBS domain CLI_RS05880 PF01769 Divalent cation transporter CLI_RS05880 PF03448 MgtE intracellular N domain CLI_RS05885 PF00266 Aminotransferase class-V CLI_RS05890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI_RS05890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI_RS05900 PF00258 Flavodoxin CLI_RS05900 PF00753 Metallo-beta-lactamase superfamily CLI_RS05900 PF00301 Rubredoxin CLI_RS05910 PF02028 BCCT, betaine/carnitine/choline family transporter CLI_RS05925 PF00857 Isochorismatase family CLI_RS05960 PF00581 Rhodanese-like domain CLI_RS05970 PF01594 AI-2E family transporter CLI_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS06005 PF00005 ABC transporter CLI_RS06005 PF08402 TOBE domain CLI_RS06020 PF00575 S1 RNA binding domain CLI_RS06020 PF02401 LytB protein CLI_RS06025 PF03061 Thioesterase superfamily CLI_RS06040 PF02653 Branched-chain amino acid transport system / permease component CLI_RS06045 PF00005 ABC transporter CLI_RS06045 PF09383 NIL domain CLI_RS06055 PF00155 Aminotransferase class I and II CLI_RS06060 PF00892 EamA-like transporter family CLI_RS06065 PF00294 pfkB family carbohydrate kinase CLI_RS06070 PF04227 Indigoidine synthase A like protein CLI_RS06075 PF02558 Ketopantoate reductase PanE/ApbA CLI_RS06075 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLI_RS06080 PF04961 Formiminotransferase-cyclodeaminase CLI_RS06085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLI_RS06085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLI_RS06110 PF02535 ZIP Zinc transporter CLI_RS06115 PF02082 Transcriptional regulator CLI_RS06120 PF00291 Pyridoxal-phosphate dependent enzyme CLI_RS06125 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS06130 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI_RS06135 PF00266 Aminotransferase class-V CLI_RS06140 PF02540 NAD synthase CLI_RS06160 PF04397 LytTr DNA-binding domain CLI_RS06160 PF00072 Response regulator receiver domain CLI_RS06165 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLI_RS06165 PF17203 Single cache domain 3 CLI_RS06165 PF00989 PAS fold CLI_RS06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS06170 PF00005 ABC transporter CLI_RS06180 PF03009 Glycerophosphoryl diester phosphodiesterase family CLI_RS06190 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLI_RS06190 PF10371 Domain of unknown function CLI_RS06190 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLI_RS06190 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLI_RS06190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI_RS06200 PF00999 Sodium/hydrogen exchanger family CLI_RS06205 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CLI_RS06210 PF01593 Flavin containing amine oxidoreductase CLI_RS06215 PF02311 AraC-like ligand binding domain CLI_RS06215 PF12833 Helix-turn-helix domain CLI_RS06230 PF00480 ROK family CLI_RS06235 PF00232 Glycosyl hydrolase family 1 CLI_RS06240 PF01373 Glycosyl hydrolase family 14 CLI_RS06240 PF00686 Starch binding domain CLI_RS06245 PF00579 tRNA synthetases class I (W and Y) CLI_RS06245 PF01479 S4 domain CLI_RS06255 PF00005 ABC transporter CLI_RS06285 PF00704 Glycosyl hydrolases family 18 CLI_RS06285 PF01476 LysM domain CLI_RS06290 PF03707 Bacterial signalling protein N terminal repeat CLI_RS06290 PF00563 EAL domain CLI_RS06290 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS06295 PF03315 Serine dehydratase beta chain CLI_RS06300 PF03313 Serine dehydratase alpha chain CLI_RS06325 PF01244 Membrane dipeptidase (Peptidase family M19) CLI_RS06330 PF04893 Yip1 domain CLI_RS06335 PF12704 MacB-like periplasmic core domain CLI_RS06335 PF02687 FtsX-like permease family CLI_RS06335 PF00005 ABC transporter CLI_RS06345 PF00005 ABC transporter CLI_RS06350 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI_RS06350 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS06355 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS06360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI_RS06375 PF05067 Manganese containing catalase CLI_RS06380 PF12708 Pectate lyase superfamily protein CLI_RS06380 PF09992 Phosphodiester glycosidase CLI_RS06400 PF00692 dUTPase CLI_RS06405 PF08141 Small acid-soluble spore protein H family CLI_RS06435 PF00440 Bacterial regulatory proteins, tetR family CLI_RS06445 PF00005 ABC transporter CLI_RS06465 PF01235 Sodium:alanine symporter family CLI_RS06475 PF01381 Helix-turn-helix CLI_RS06495 PF00462 Glutaredoxin CLI_RS06500 PF00171 Aldehyde dehydrogenase family CLI_RS06505 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS06515 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS06520 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS06525 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS06530 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS06535 PF00085 Thioredoxin CLI_RS06540 PF04723 Glycine reductase complex selenoprotein A CLI_RS06545 PF04723 Glycine reductase complex selenoprotein A CLI_RS06550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLI_RS06555 PF02504 Fatty acid synthesis protein CLI_RS06560 PF02245 Methylpurine-DNA glycosylase (MPG) CLI_RS06570 PF01636 Phosphotransferase enzyme family CLI_RS06575 PF01008 Initiation factor 2 subunit family CLI_RS06585 PF00596 Class II Aldolase and Adducin N-terminal domain CLI_RS06595 PF00455 DeoR C terminal sensor domain CLI_RS06595 PF08220 DeoR-like helix-turn-helix domain CLI_RS06605 PF16916 Dimerisation domain of Zinc Transporter CLI_RS06605 PF01545 Cation efflux family CLI_RS06610 PF04239 Protein of unknown function (DUF421) CLI_RS06660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLI_RS06660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLI_RS06665 PF00941 FAD binding domain in molybdopterin dehydrogenase CLI_RS06665 PF03450 CO dehydrogenase flavoprotein C-terminal domain CLI_RS06670 PF01799 [2Fe-2S] binding domain CLI_RS06670 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI_RS06675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI_RS06680 PF01131 DNA topoisomerase CLI_RS06680 PF01751 Toprim domain CLI_RS06685 PF02659 Putative manganese efflux pump CLI_RS06700 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLI_RS06705 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLI_RS06705 PF00753 Metallo-beta-lactamase superfamily CLI_RS06705 PF17770 Ribonuclease J C-terminal domain CLI_RS06710 PF01235 Sodium:alanine symporter family CLI_RS06720 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) CLI_RS06745 PF10997 Alternate to MurJ CLI_RS06750 PF02583 Metal-sensitive transcriptional repressor CLI_RS06755 PF00403 Heavy-metal-associated domain CLI_RS06760 PF00403 Heavy-metal-associated domain CLI_RS06770 PF00664 ABC transporter transmembrane region CLI_RS06770 PF00005 ABC transporter CLI_RS06785 PF00072 Response regulator receiver domain CLI_RS06785 PF00486 Transcriptional regulatory protein, C terminal CLI_RS06790 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS06790 PF16736 Single Cache-like CLI_RS06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS06790 PF00989 PAS fold CLI_RS06795 PF12704 MacB-like periplasmic core domain CLI_RS06795 PF02687 FtsX-like permease family CLI_RS06795 PF00005 ABC transporter CLI_RS06805 PF02645 Uncharacterised protein, DegV family COG1307 CLI_RS06855 PF06750 Bacterial Peptidase A24 N-terminal domain CLI_RS06855 PF01478 Type IV leader peptidase family CLI_RS06865 PF02254 TrkA-N domain CLI_RS06865 PF02080 TrkA-C domain CLI_RS06870 PF02386 Cation transport protein CLI_RS06880 PF13361 UvrD-like helicase C-terminal domain CLI_RS06880 PF00580 UvrD/REP helicase N-terminal domain CLI_RS06880 PF13361 UvrD-like helicase C-terminal domain CLI_RS06880 PF00580 UvrD/REP helicase N-terminal domain CLI_RS06895 PF01471 Putative peptidoglycan binding domain CLI_RS06895 PF07486 Cell Wall Hydrolase CLI_RS06900 PF02915 Rubrerythrin CLI_RS06905 PF08486 Stage II sporulation protein CLI_RS06905 PF04122 Putative cell wall binding repeat 2 CLI_RS06910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS06910 PF00367 phosphotransferase system, EIIB CLI_RS06910 PF02378 Phosphotransferase system, EIIC CLI_RS06915 PF01255 Putative undecaprenyl diphosphate synthase CLI_RS06930 PF03063 Prismane/CO dehydrogenase family CLI_RS06940 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLI_RS06940 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS06945 PF00072 Response regulator receiver domain CLI_RS06945 PF00486 Transcriptional regulatory protein, C terminal CLI_RS06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS06950 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS06955 PF12704 MacB-like periplasmic core domain CLI_RS06955 PF02687 FtsX-like permease family CLI_RS06960 PF00005 ABC transporter CLI_RS06975 PF13545 Crp-like helix-turn-helix domain CLI_RS06980 PF07690 Major Facilitator Superfamily CLI_RS06985 PF01497 Periplasmic binding protein CLI_RS06990 PF01032 FecCD transport family CLI_RS06995 PF00005 ABC transporter CLI_RS07005 PF12838 4Fe-4S dicluster domain CLI_RS07010 PF01380 SIS domain CLI_RS07010 PF01418 Helix-turn-helix domain, rpiR family CLI_RS07015 PF13580 SIS domain CLI_RS07020 PF00367 phosphotransferase system, EIIB CLI_RS07020 PF02378 Phosphotransferase system, EIIC CLI_RS07065 PF05227 CHASE3 domain CLI_RS07065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS07065 PF00672 HAMP domain CLI_RS07070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI_RS07075 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07080 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI_RS07080 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07085 PF00005 ABC transporter CLI_RS07090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI_RS07090 PF00005 ABC transporter CLI_RS07100 PF00950 ABC 3 transport family CLI_RS07105 PF00005 ABC transporter CLI_RS07110 PF01297 Zinc-uptake complex component A periplasmic CLI_RS07125 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS07140 PF00005 ABC transporter CLI_RS07145 PF01475 Ferric uptake regulator family CLI_RS07150 PF02001 Protein of unknown function DUF134 CLI_RS07155 PF00246 Zinc carboxypeptidase CLI_RS07155 PF01476 LysM domain CLI_RS07165 PF00753 Metallo-beta-lactamase superfamily CLI_RS07170 PF13520 Amino acid permease CLI_RS07175 PF08000 Bacterial PH domain CLI_RS07180 PF07730 Histidine kinase CLI_RS07185 PF00196 Bacterial regulatory proteins, luxR family CLI_RS07185 PF00072 Response regulator receiver domain CLI_RS07190 PF00005 ABC transporter CLI_RS07220 PF00313 'Cold-shock' DNA-binding domain CLI_RS07225 PF01546 Peptidase family M20/M25/M40 CLI_RS07225 PF07687 Peptidase dimerisation domain CLI_RS07235 PF08543 Phosphomethylpyrimidine kinase CLI_RS07240 PF01625 Peptide methionine sulfoxide reductase CLI_RS07245 PF00005 ABC transporter CLI_RS07250 PF02687 FtsX-like permease family CLI_RS07260 PF00072 Response regulator receiver domain CLI_RS07260 PF00486 Transcriptional regulatory protein, C terminal CLI_RS07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS07270 PF00005 ABC transporter CLI_RS07290 PF00155 Aminotransferase class I and II CLI_RS07295 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI_RS07300 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07305 PF00005 ABC transporter CLI_RS07315 PF00768 D-alanyl-D-alanine carboxypeptidase CLI_RS07315 PF07943 Penicillin-binding protein 5, C-terminal domain CLI_RS07320 PF00293 NUDIX domain CLI_RS07330 PF00465 Iron-containing alcohol dehydrogenase CLI_RS07340 PF03606 C4-dicarboxylate anaerobic carrier CLI_RS07345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLI_RS07345 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CLI_RS07345 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CLI_RS07350 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI_RS07355 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07365 PF13361 UvrD-like helicase C-terminal domain CLI_RS07365 PF00580 UvrD/REP helicase N-terminal domain CLI_RS07375 PF02491 SHS2 domain inserted in FTSA CLI_RS07380 PF07687 Peptidase dimerisation domain CLI_RS07380 PF01546 Peptidase family M20/M25/M40 CLI_RS07385 PF01520 N-acetylmuramoyl-L-alanine amidase CLI_RS07385 PF08239 Bacterial SH3 domain CLI_RS07390 PF00849 RNA pseudouridylate synthase CLI_RS07390 PF01479 S4 domain CLI_RS07395 PF14667 Polysaccharide biosynthesis C-terminal domain CLI_RS07395 PF01943 Polysaccharide biosynthesis protein CLI_RS07415 PF00465 Iron-containing alcohol dehydrogenase CLI_RS07420 PF13654 AAA domain CLI_RS07420 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI_RS07435 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI_RS07435 PF01447 Thermolysin metallopeptidase, catalytic domain CLI_RS07435 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI_RS07435 PF03413 Peptidase propeptide and YPEB domain CLI_RS07440 PF01447 Thermolysin metallopeptidase, catalytic domain CLI_RS07440 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI_RS07440 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI_RS07440 PF03413 Peptidase propeptide and YPEB domain CLI_RS07445 PF03413 Peptidase propeptide and YPEB domain CLI_RS07445 PF01447 Thermolysin metallopeptidase, catalytic domain CLI_RS07445 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI_RS07445 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI_RS07450 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI_RS07450 PF03413 Peptidase propeptide and YPEB domain CLI_RS07450 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI_RS07450 PF01447 Thermolysin metallopeptidase, catalytic domain CLI_RS07455 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI_RS07455 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI_RS07455 PF03413 Peptidase propeptide and YPEB domain CLI_RS07455 PF01447 Thermolysin metallopeptidase, catalytic domain CLI_RS07460 PF03413 Peptidase propeptide and YPEB domain CLI_RS07460 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI_RS07460 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI_RS07460 PF01447 Thermolysin metallopeptidase, catalytic domain CLI_RS07465 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLI_RS07465 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLI_RS07470 PF00890 FAD binding domain CLI_RS07475 PF02445 Quinolinate synthetase A protein CLI_RS07485 PF03006 Haemolysin-III related CLI_RS07490 PF06071 Protein of unknown function (DUF933) CLI_RS07490 PF01926 50S ribosome-binding GTPase CLI_RS07495 PF02381 MraZ protein, putative antitoxin-like CLI_RS07500 PF01795 MraW methylase family CLI_RS07510 PF03717 Penicillin-binding Protein dimerisation domain CLI_RS07510 PF03793 PASTA domain CLI_RS07510 PF00905 Penicillin binding protein transpeptidase domain CLI_RS07515 PF02875 Mur ligase family, glutamate ligase domain CLI_RS07515 PF01225 Mur ligase family, catalytic domain CLI_RS07515 PF08245 Mur ligase middle domain CLI_RS07520 PF01225 Mur ligase family, catalytic domain CLI_RS07520 PF02875 Mur ligase family, glutamate ligase domain CLI_RS07520 PF08245 Mur ligase middle domain CLI_RS07525 PF00953 Glycosyl transferase family 4 CLI_RS07525 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLI_RS07530 PF01098 Cell cycle protein CLI_RS07535 PF03799 Cell division protein FtsQ CLI_RS07535 PF08478 POTRA domain, FtsQ-type CLI_RS07545 PF06947 Protein of unknown function (DUF1290) CLI_RS07555 PF01168 Alanine racemase, N-terminal domain CLI_RS07560 PF04472 Cell division protein SepF CLI_RS07565 PF02325 YGGT family CLI_RS07575 PF05103 DivIVA protein CLI_RS07580 PF01761 3-dehydroquinate synthase CLI_RS07585 PF01048 Phosphorylase superfamily CLI_RS07590 PF00793 DAHP synthetase I family CLI_RS07590 PF01817 Chorismate mutase type II CLI_RS07595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLI_RS07600 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLI_RS07605 PF01252 Signal peptidase (SPase) II CLI_RS07610 PF00849 RNA pseudouridylate synthase CLI_RS07610 PF01479 S4 domain CLI_RS07615 PF00156 Phosphoribosyl transferase domain CLI_RS07620 PF00860 Permease family CLI_RS07625 PF03372 Endonuclease/Exonuclease/phosphatase family CLI_RS07630 PF02926 THUMP domain CLI_RS07630 PF01170 Putative RNA methylase family UPF0020 CLI_RS07645 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07650 PF00005 ABC transporter CLI_RS07660 PF01734 Patatin-like phospholipase CLI_RS07670 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLI_RS07675 PF03553 Na+/H+ antiporter family CLI_RS07685 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLI_RS07685 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLI_RS07690 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLI_RS07695 PF02310 B12 binding domain CLI_RS07695 PF02607 B12 binding domain CLI_RS07700 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLI_RS07710 PF00005 ABC transporter CLI_RS07710 PF09383 NIL domain CLI_RS07715 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07720 PF03180 NLPA lipoprotein CLI_RS07730 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS07730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLI_RS07735 PF03590 Aspartate-ammonia ligase CLI_RS07740 PF01266 FAD dependent oxidoreductase CLI_RS07740 PF00355 Rieske [2Fe-2S] domain CLI_RS07745 PF01131 DNA topoisomerase CLI_RS07745 PF01751 Toprim domain CLI_RS07750 PF01624 MutS domain I CLI_RS07750 PF05188 MutS domain II CLI_RS07750 PF05192 MutS domain III CLI_RS07750 PF05190 MutS family domain IV CLI_RS07750 PF00488 MutS domain V CLI_RS07755 PF00248 Aldo/keto reductase family CLI_RS07760 PF04073 Aminoacyl-tRNA editing domain CLI_RS07765 PF00005 ABC transporter CLI_RS07775 PF00440 Bacterial regulatory proteins, tetR family CLI_RS07775 PF13977 BetI-type transcriptional repressor, C-terminal CLI_RS07785 PF08402 TOBE domain CLI_RS07785 PF00005 ABC transporter CLI_RS07790 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07795 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS07805 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLI_RS07805 PF00056 lactate/malate dehydrogenase, NAD binding domain CLI_RS07810 PF00392 Bacterial regulatory proteins, gntR family CLI_RS07810 PF07729 FCD domain CLI_RS07830 PF01966 HD domain CLI_RS07830 PF00072 Response regulator receiver domain CLI_RS07840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS07840 PF00672 HAMP domain CLI_RS07840 PF02743 Cache domain CLI_RS07855 PF01638 HxlR-like helix-turn-helix CLI_RS07865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLI_RS07865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLI_RS07870 PF09370 Phosphoenolpyruvate hydrolase-like CLI_RS07880 PF09370 Phosphoenolpyruvate hydrolase-like CLI_RS07885 PF01381 Helix-turn-helix CLI_RS07890 PF00690 Cation transporter/ATPase, N-terminus CLI_RS07890 PF00689 Cation transporting ATPase, C-terminus CLI_RS07895 PF01545 Cation efflux family CLI_RS07895 PF16916 Dimerisation domain of Zinc Transporter CLI_RS07900 PF00854 POT family CLI_RS07915 PF08668 HDOD domain CLI_RS07925 PF00690 Cation transporter/ATPase, N-terminus CLI_RS07925 PF00689 Cation transporting ATPase, C-terminus CLI_RS07945 PF00027 Cyclic nucleotide-binding domain CLI_RS07950 PF00005 ABC transporter CLI_RS07965 PF17874 MalT-like TPR region CLI_RS07965 PF00196 Bacterial regulatory proteins, luxR family CLI_RS07975 PF13280 WYL domain CLI_RS07975 PF08279 HTH domain CLI_RS07985 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS07990 PF01242 6-pyruvoyl tetrahydropterin synthase CLI_RS07995 PF04055 Radical SAM superfamily CLI_RS08000 PF01227 GTP cyclohydrolase I CLI_RS08005 PF06508 Queuosine biosynthesis protein QueC CLI_RS08010 PF02517 CPBP intramembrane metalloprotease CLI_RS08015 PF08447 PAS fold CLI_RS08015 PF13426 PAS domain CLI_RS08015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS08030 PF04198 Putative sugar-binding domain CLI_RS08035 PF01791 DeoC/LacD family aldolase CLI_RS08040 PF00294 pfkB family carbohydrate kinase CLI_RS08045 PF13393 Histidyl-tRNA synthetase CLI_RS08050 PF01634 ATP phosphoribosyltransferase CLI_RS08055 PF00815 Histidinol dehydrogenase CLI_RS08060 PF00475 Imidazoleglycerol-phosphate dehydratase CLI_RS08065 PF00117 Glutamine amidotransferase class-I CLI_RS08070 PF00977 Histidine biosynthesis protein CLI_RS08075 PF00155 Aminotransferase class I and II CLI_RS08080 PF00977 Histidine biosynthesis protein CLI_RS08085 PF01502 Phosphoribosyl-AMP cyclohydrolase CLI_RS08090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLI_RS08095 PF04143 Sulphur transport CLI_RS08105 PF04143 Sulphur transport CLI_RS08110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI_RS08110 PF03466 LysR substrate binding domain CLI_RS08120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI_RS08120 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS08125 PF04143 Sulphur transport CLI_RS08130 PF00005 ABC transporter CLI_RS08145 PF00072 Response regulator receiver domain CLI_RS08145 PF00486 Transcriptional regulatory protein, C terminal CLI_RS08150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS08150 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS08160 PF13520 Amino acid permease CLI_RS08195 PF00271 Helicase conserved C-terminal domain CLI_RS08195 PF00176 SNF2 family N-terminal domain CLI_RS08195 PF04434 SWIM zinc finger CLI_RS08210 PF01497 Periplasmic binding protein CLI_RS08210 PF12833 Helix-turn-helix domain CLI_RS08215 PF08021 Siderophore-interacting FAD-binding domain CLI_RS08215 PF04954 Siderophore-interacting protein CLI_RS08215 PF00664 ABC transporter transmembrane region CLI_RS08215 PF00005 ABC transporter CLI_RS08220 PF00005 ABC transporter CLI_RS08220 PF00664 ABC transporter transmembrane region CLI_RS08225 PF00356 Bacterial regulatory proteins, lacI family CLI_RS08225 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLI_RS08230 PF00480 ROK family CLI_RS08230 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLI_RS08235 PF16657 Maltogenic Amylase, C-terminal domain CLI_RS08235 PF00128 Alpha amylase, catalytic domain CLI_RS08240 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS08240 PF00367 phosphotransferase system, EIIB CLI_RS08240 PF02378 Phosphotransferase system, EIIC CLI_RS08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS08270 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS08275 PF00486 Transcriptional regulatory protein, C terminal CLI_RS08275 PF00072 Response regulator receiver domain CLI_RS08290 PF04284 Protein of unknown function (DUF441) CLI_RS08300 PF08220 DeoR-like helix-turn-helix domain CLI_RS08300 PF00455 DeoR C terminal sensor domain CLI_RS08315 PF04151 Bacterial pre-peptidase C-terminal domain CLI_RS08315 PF01752 Collagenase CLI_RS08315 PF08453 Peptidase family M9 N-terminal CLI_RS08315 PF18496 Collagenase G catalytic helper subdomain CLI_RS08320 PF02219 Methylenetetrahydrofolate reductase CLI_RS08330 PF02310 B12 binding domain CLI_RS08330 PF02574 Homocysteine S-methyltransferase CLI_RS08330 PF00809 Pterin binding enzyme CLI_RS08330 PF02607 B12 binding domain CLI_RS08330 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLI_RS08350 PF13426 PAS domain CLI_RS08350 PF02954 Bacterial regulatory protein, Fis family CLI_RS08350 PF00158 Sigma-54 interaction domain CLI_RS08360 PF00676 Dehydrogenase E1 component CLI_RS08365 PF02780 Transketolase, C-terminal domain CLI_RS08365 PF02779 Transketolase, pyrimidine binding domain CLI_RS08370 PF01513 ATP-NAD kinase CLI_RS08375 PF02817 e3 binding domain CLI_RS08375 PF00364 Biotin-requiring enzyme CLI_RS08375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLI_RS08380 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS08380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI_RS08385 PF10437 Bacterial lipoate protein ligase C-terminus CLI_RS08385 PF03099 Biotin/lipoate A/B protein ligase family CLI_RS08390 PF00571 CBS domain CLI_RS08390 PF00005 ABC transporter CLI_RS08395 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLI_RS08400 PF00291 Pyridoxal-phosphate dependent enzyme CLI_RS08405 PF08544 GHMP kinases C terminal CLI_RS08405 PF00288 GHMP kinases N terminal domain CLI_RS08410 PF13840 ACT domain CLI_RS08410 PF00696 Amino acid kinase family CLI_RS08415 PF00742 Homoserine dehydrogenase CLI_RS08415 PF03447 Homoserine dehydrogenase, NAD binding domain CLI_RS08415 PF01842 ACT domain CLI_RS08420 PF00158 Sigma-54 interaction domain CLI_RS08420 PF13426 PAS domain CLI_RS08420 PF02954 Bacterial regulatory protein, Fis family CLI_RS08425 PF00465 Iron-containing alcohol dehydrogenase CLI_RS08430 PF00175 Oxidoreductase NAD-binding domain CLI_RS08430 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLI_RS08435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS08435 PF13247 4Fe-4S dicluster domain CLI_RS08435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI_RS08440 PF00158 Sigma-54 interaction domain CLI_RS08440 PF13426 PAS domain CLI_RS08440 PF02954 Bacterial regulatory protein, Fis family CLI_RS08450 PF02368 Bacterial Ig-like domain (group 2) CLI_RS08490 PF01168 Alanine racemase, N-terminal domain CLI_RS08490 PF00842 Alanine racemase, C-terminal domain CLI_RS08495 PF00672 HAMP domain CLI_RS08495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS08495 PF02743 Cache domain CLI_RS08500 PF00860 Permease family CLI_RS08515 PF02743 Cache domain CLI_RS08515 PF00672 HAMP domain CLI_RS08515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS08530 PF00176 SNF2 family N-terminal domain CLI_RS08530 PF00271 Helicase conserved C-terminal domain CLI_RS08530 PF04434 SWIM zinc finger CLI_RS08535 PF07690 Major Facilitator Superfamily CLI_RS08555 PF00005 ABC transporter CLI_RS08560 PF04851 Type III restriction enzyme, res subunit CLI_RS08560 PF13307 Helicase C-terminal domain CLI_RS08560 PF00929 Exonuclease CLI_RS08565 PF06207 Protein of unknown function (DUF1002) CLI_RS08575 PF00011 Hsp20/alpha crystallin family CLI_RS08580 PF07690 Major Facilitator Superfamily CLI_RS08585 PF00440 Bacterial regulatory proteins, tetR family CLI_RS08595 PF00294 pfkB family carbohydrate kinase CLI_RS08600 PF00854 POT family CLI_RS08615 PF12671 Putative amidase domain CLI_RS08625 PF00294 pfkB family carbohydrate kinase CLI_RS08640 PF00313 'Cold-shock' DNA-binding domain CLI_RS08645 PF02743 Cache domain CLI_RS08645 PF00672 HAMP domain CLI_RS08645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS08650 PF00005 ABC transporter CLI_RS08650 PF12848 ABC transporter CLI_RS08655 PF04073 Aminoacyl-tRNA editing domain CLI_RS08660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLI_RS08660 PF13187 4Fe-4S dicluster domain CLI_RS08660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLI_RS08665 PF00072 Response regulator receiver domain CLI_RS08665 PF01584 CheW-like domain CLI_RS08670 PF00270 DEAD/DEAH box helicase CLI_RS08670 PF00271 Helicase conserved C-terminal domain CLI_RS08675 PF13509 S1 domain CLI_RS08675 PF17783 CvfB-like winged helix domain CLI_RS08680 PF03880 DbpA RNA binding domain CLI_RS08680 PF00270 DEAD/DEAH box helicase CLI_RS08680 PF00271 Helicase conserved C-terminal domain CLI_RS08695 PF13457 GW (Gly-Tryp) dipeptide domain CLI_RS08695 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLI_RS08700 PF00210 Ferritin-like domain CLI_RS08710 PF00072 Response regulator receiver domain CLI_RS08720 PF07670 Nucleoside recognition CLI_RS08725 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLI_RS08730 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLI_RS08740 PF00589 Phage integrase family CLI_RS08740 PF02899 Phage integrase, N-terminal SAM-like domain CLI_RS08750 PF00717 Peptidase S24-like CLI_RS08750 PF01726 LexA DNA binding domain CLI_RS08755 PF06838 Methionine gamma-lyase CLI_RS08760 PF17209 Hfq protein CLI_RS08770 PF01119 DNA mismatch repair protein, C-terminal domain CLI_RS08770 PF08676 MutL C terminal dimerisation domain CLI_RS08775 PF05192 MutS domain III CLI_RS08775 PF05188 MutS domain II CLI_RS08775 PF05190 MutS family domain IV CLI_RS08775 PF01624 MutS domain I CLI_RS08775 PF00488 MutS domain V CLI_RS08780 PF00919 Uncharacterized protein family UPF0004 CLI_RS08780 PF04055 Radical SAM superfamily CLI_RS08780 PF01938 TRAM domain CLI_RS08785 PF00155 Aminotransferase class I and II CLI_RS08795 PF00155 Aminotransferase class I and II CLI_RS08810 PF00575 S1 RNA binding domain CLI_RS08810 PF02401 LytB protein CLI_RS08815 PF02224 Cytidylate kinase CLI_RS08830 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLI_RS08830 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLI_RS08835 PF01380 SIS domain CLI_RS08835 PF01418 Helix-turn-helix domain, rpiR family CLI_RS08840 PF00849 RNA pseudouridylate synthase CLI_RS08840 PF01479 S4 domain CLI_RS08850 PF03313 Serine dehydratase alpha chain CLI_RS08865 PF00672 HAMP domain CLI_RS08865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS08865 PF02743 Cache domain CLI_RS08870 PF02683 Cytochrome C biogenesis protein transmembrane region CLI_RS08870 PF11412 Disulphide bond corrector protein DsbC CLI_RS08880 PF00795 Carbon-nitrogen hydrolase CLI_RS08890 PF02080 TrkA-C domain CLI_RS08890 PF02254 TrkA-N domain CLI_RS08890 PF00999 Sodium/hydrogen exchanger family CLI_RS08895 PF02627 Carboxymuconolactone decarboxylase family CLI_RS08910 PF01906 Putative heavy-metal-binding CLI_RS08940 PF02769 AIR synthase related protein, C-terminal domain CLI_RS08940 PF00586 AIR synthase related protein, N-terminal domain CLI_RS08945 PF01924 Hydrogenase formation hypA family CLI_RS08950 PF01455 HupF/HypC family CLI_RS08955 PF01300 Telomere recombination CLI_RS08955 PF17788 HypF Kae1-like domain CLI_RS08955 PF07503 HypF finger CLI_RS08955 PF00708 Acylphosphatase CLI_RS08975 PF00374 Nickel-dependent hydrogenase CLI_RS08980 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CLI_RS08980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLI_RS09000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLI_RS09000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLI_RS09000 PF02142 MGS-like domain CLI_RS09005 PF00117 Glutamine amidotransferase class-I CLI_RS09005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLI_RS09055 PF12848 ABC transporter CLI_RS09055 PF00005 ABC transporter CLI_RS09060 PF02256 Iron hydrogenase small subunit CLI_RS09060 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLI_RS09060 PF00037 4Fe-4S binding domain CLI_RS09060 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLI_RS09065 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLI_RS09065 PF00037 4Fe-4S binding domain CLI_RS09065 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS09085 PF01594 AI-2E family transporter CLI_RS09090 PF07943 Penicillin-binding protein 5, C-terminal domain CLI_RS09090 PF00768 D-alanyl-D-alanine carboxypeptidase CLI_RS09100 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CLI_RS09105 PF04079 Segregation and condensation complex subunit ScpB CLI_RS09110 PF02616 Segregation and condensation protein ScpA CLI_RS09120 PF07943 Penicillin-binding protein 5, C-terminal domain CLI_RS09120 PF00768 D-alanyl-D-alanine carboxypeptidase CLI_RS09125 PF12787 EcsC protein family CLI_RS09140 PF00591 Glycosyl transferase family, a/b domain CLI_RS09140 PF02885 Glycosyl transferase family, helical bundle domain CLI_RS09140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CLI_RS09145 PF01048 Phosphorylase superfamily CLI_RS09150 PF00589 Phage integrase family CLI_RS09150 PF02899 Phage integrase, N-terminal SAM-like domain CLI_RS09165 PF00293 NUDIX domain CLI_RS09170 PF13520 Amino acid permease CLI_RS09175 PF00877 NlpC/P60 family CLI_RS09315 PF03354 Phage Terminase CLI_RS09465 PF00589 Phage integrase family CLI_RS09465 PF02899 Phage integrase, N-terminal SAM-like domain CLI_RS09470 PF00072 Response regulator receiver domain CLI_RS09470 PF08769 Sporulation initiation factor Spo0A C terminal CLI_RS09475 PF17820 PDZ domain CLI_RS09475 PF05580 SpoIVB peptidase S55 CLI_RS09480 PF04204 Homoserine O-succinyltransferase CLI_RS09485 PF00742 Homoserine dehydrogenase CLI_RS09485 PF03447 Homoserine dehydrogenase, NAD binding domain CLI_RS09485 PF01842 ACT domain CLI_RS09490 PF01053 Cys/Met metabolism PLP-dependent enzyme CLI_RS09495 PF02463 RecF/RecN/SMC N terminal domain CLI_RS09500 PF01316 Arginine repressor, DNA binding domain CLI_RS09500 PF02863 Arginine repressor, C-terminal domain CLI_RS09505 PF01513 ATP-NAD kinase CLI_RS09510 PF01479 S4 domain CLI_RS09510 PF01728 FtsJ-like methyltransferase CLI_RS09515 PF02779 Transketolase, pyrimidine binding domain CLI_RS09515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLI_RS09515 PF02780 Transketolase, C-terminal domain CLI_RS09525 PF00348 Polyprenyl synthetase CLI_RS09530 PF02609 Exonuclease VII small subunit CLI_RS09535 PF13742 OB-fold nucleic acid binding domain CLI_RS09535 PF02601 Exonuclease VII, large subunit CLI_RS09540 PF01029 NusB family CLI_RS09545 PF03780 Asp23 family, cell envelope-related function CLI_RS09565 PF09546 Stage III sporulation protein AE (spore_III_AE) CLI_RS09570 PF06686 Stage III sporulation protein AC/AD protein family CLI_RS09575 PF06686 Stage III sporulation protein AC/AD protein family CLI_RS09595 PF09285 Elongation factor P, C-terminal CLI_RS09595 PF08207 Elongation factor P (EF-P) KOW-like domain CLI_RS09595 PF01132 Elongation factor P (EF-P) OB domain CLI_RS09600 PF01220 Dehydroquinase class II CLI_RS09605 PF01202 Shikimate kinase CLI_RS09645 PF08334 Type II secretion system (T2SS), protein G CLI_RS09645 PF07963 Prokaryotic N-terminal methylation motif CLI_RS09650 PF00482 Type II secretion system (T2SS), protein F CLI_RS09655 PF00437 Type II/IV secretion system protein CLI_RS09670 PF01678 Diaminopimelate epimerase CLI_RS09675 PF05670 NFACT protein RNA binding domain CLI_RS09680 PF01416 tRNA pseudouridine synthase CLI_RS09690 PF01230 HIT domain CLI_RS09695 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLI_RS09705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS09705 PF05227 CHASE3 domain CLI_RS09705 PF00672 HAMP domain CLI_RS09710 PF03415 Clostripain family CLI_RS09720 PF00072 Response regulator receiver domain CLI_RS09720 PF00486 Transcriptional regulatory protein, C terminal CLI_RS09725 PF00672 HAMP domain CLI_RS09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS09725 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS09725 PF13426 PAS domain CLI_RS09730 PF01625 Peptide methionine sulfoxide reductase CLI_RS09740 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS09740 PF00672 HAMP domain CLI_RS09740 PF00989 PAS fold CLI_RS09740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS09740 PF18698 Histidine kinase sensor domain CLI_RS09745 PF00486 Transcriptional regulatory protein, C terminal CLI_RS09745 PF00072 Response regulator receiver domain CLI_RS09760 PF00005 ABC transporter CLI_RS09770 PF00005 ABC transporter CLI_RS09770 PF00664 ABC transporter transmembrane region CLI_RS09775 PF00664 ABC transporter transmembrane region CLI_RS09775 PF00005 ABC transporter CLI_RS09780 PF01047 MarR family CLI_RS09785 PF00583 Acetyltransferase (GNAT) family CLI_RS09790 PF00899 ThiF family CLI_RS09800 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CLI_RS09800 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLI_RS09805 PF00158 Sigma-54 interaction domain CLI_RS09805 PF02954 Bacterial regulatory protein, Fis family CLI_RS09805 PF13426 PAS domain CLI_RS09815 PF01967 MoaC family CLI_RS09820 PF06463 Molybdenum Cofactor Synthesis C CLI_RS09820 PF04055 Radical SAM superfamily CLI_RS09825 PF12728 Helix-turn-helix domain CLI_RS09825 PF12727 PBP superfamily domain CLI_RS09830 PF03453 MoeA N-terminal region (domain I and II) CLI_RS09830 PF03454 MoeA C-terminal region (domain IV) CLI_RS09830 PF00994 Probable molybdopterin binding domain CLI_RS09835 PF00994 Probable molybdopterin binding domain CLI_RS09840 PF00005 ABC transporter CLI_RS09845 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS09850 PF12849 PBP superfamily domain CLI_RS09855 PF01554 MatE CLI_RS09870 PF00005 ABC transporter CLI_RS09875 PF02687 FtsX-like permease family CLI_RS09875 PF12704 MacB-like periplasmic core domain CLI_RS09885 PF00005 ABC transporter CLI_RS09885 PF00664 ABC transporter transmembrane region CLI_RS09890 PF00005 ABC transporter CLI_RS09890 PF00664 ABC transporter transmembrane region CLI_RS09895 PF13411 MerR HTH family regulatory protein CLI_RS09895 PF06445 GyrI-like small molecule binding domain CLI_RS09910 PF00704 Glycosyl hydrolases family 18 CLI_RS09910 PF00041 Fibronectin type III domain CLI_RS09915 PF02954 Bacterial regulatory protein, Fis family CLI_RS09915 PF13426 PAS domain CLI_RS09915 PF00158 Sigma-54 interaction domain CLI_RS09925 PF01042 Endoribonuclease L-PSP CLI_RS09930 PF00375 Sodium:dicarboxylate symporter family CLI_RS09935 PF00155 Aminotransferase class I and II CLI_RS09940 PF03313 Serine dehydratase alpha chain CLI_RS09960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS09960 PF00672 HAMP domain CLI_RS09960 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS09965 PF00072 Response regulator receiver domain CLI_RS09965 PF00486 Transcriptional regulatory protein, C terminal CLI_RS09975 PF02361 Cobalt transport protein CLI_RS09980 PF00005 ABC transporter CLI_RS09990 PF01168 Alanine racemase, N-terminal domain CLI_RS09995 PF03845 Spore germination protein CLI_RS10000 PF03323 Bacillus/Clostridium GerA spore germination protein CLI_RS10005 PF03845 Spore germination protein CLI_RS10025 PF02627 Carboxymuconolactone decarboxylase family CLI_RS10040 PF00999 Sodium/hydrogen exchanger family CLI_RS10040 PF03471 Transporter associated domain CLI_RS10040 PF02080 TrkA-C domain CLI_RS10045 PF00183 Hsp90 protein CLI_RS10050 PF00488 MutS domain V CLI_RS10050 PF05188 MutS domain II CLI_RS10050 PF05192 MutS domain III CLI_RS10050 PF01624 MutS domain I CLI_RS10050 PF05190 MutS family domain IV CLI_RS10055 PF00367 phosphotransferase system, EIIB CLI_RS10055 PF02378 Phosphotransferase system, EIIC CLI_RS10060 PF16657 Maltogenic Amylase, C-terminal domain CLI_RS10060 PF00128 Alpha amylase, catalytic domain CLI_RS10065 PF00392 Bacterial regulatory proteins, gntR family CLI_RS10065 PF07702 UTRA domain CLI_RS10070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI_RS10070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI_RS10075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI_RS10075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI_RS10080 PF00294 pfkB family carbohydrate kinase CLI_RS10085 PF01116 Fructose-bisphosphate aldolase class-II CLI_RS10095 PF11208 Protein of unknown function (DUF2992) CLI_RS10110 PF00465 Iron-containing alcohol dehydrogenase CLI_RS10120 PF00672 HAMP domain CLI_RS10120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS10120 PF02743 Cache domain CLI_RS10130 PF01168 Alanine racemase, N-terminal domain CLI_RS10140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLI_RS10140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLI_RS10145 PF00156 Phosphoribosyl transferase domain CLI_RS10155 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS10160 PF03313 Serine dehydratase alpha chain CLI_RS10165 PF02954 Bacterial regulatory protein, Fis family CLI_RS10165 PF13188 PAS domain CLI_RS10165 PF00158 Sigma-54 interaction domain CLI_RS10170 PF00270 DEAD/DEAH box helicase CLI_RS10170 PF00271 Helicase conserved C-terminal domain CLI_RS10175 PF00188 Cysteine-rich secretory protein family CLI_RS10180 PF00392 Bacterial regulatory proteins, gntR family CLI_RS10180 PF00155 Aminotransferase class I and II CLI_RS10185 PF00892 EamA-like transporter family CLI_RS10190 PF00155 Aminotransferase class I and II CLI_RS10195 PF00005 ABC transporter CLI_RS10200 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS10205 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI_RS10210 PF09861 Lactate racemase N-terminal domain CLI_RS10215 PF00266 Aminotransferase class-V CLI_RS10220 PF00302 Chloramphenicol acetyltransferase CLI_RS10255 PF00854 POT family CLI_RS10260 PF00854 POT family CLI_RS10265 PF01321 Creatinase/Prolidase N-terminal domain CLI_RS10265 PF00557 Metallopeptidase family M24 CLI_RS10270 PF00561 alpha/beta hydrolase fold CLI_RS10280 PF00209 Sodium:neurotransmitter symporter family CLI_RS10295 PF00881 Nitroreductase family CLI_RS10300 PF00092 von Willebrand factor type A domain CLI_RS10315 PF06100 MCRA family CLI_RS10345 PF06426 Serine acetyltransferase, N-terminal CLI_RS10345 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS10350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI_RS10360 PF00483 Nucleotidyl transferase CLI_RS10365 PF16363 GDP-mannose 4,6 dehydratase CLI_RS10395 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CLI_RS10405 PF07969 Amidohydrolase family CLI_RS10410 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CLI_RS10430 PF00145 C-5 cytosine-specific DNA methylase CLI_RS10485 PF16363 GDP-mannose 4,6 dehydratase CLI_RS10490 PF00535 Glycosyl transferase family 2 CLI_RS10500 PF14492 Elongation Factor G, domain II CLI_RS10500 PF03764 Elongation factor G, domain IV CLI_RS10500 PF00009 Elongation factor Tu GTP binding domain CLI_RS10500 PF00679 Elongation factor G C-terminus CLI_RS10510 PF00403 Heavy-metal-associated domain CLI_RS10515 PF02583 Metal-sensitive transcriptional repressor CLI_RS10520 PF00936 BMC domain CLI_RS10525 PF06130 Phosphate propanoyltransferase CLI_RS10530 PF00171 Aldehyde dehydrogenase family CLI_RS10530 PF00465 Iron-containing alcohol dehydrogenase CLI_RS10535 PF00936 BMC domain CLI_RS10540 PF06249 Ethanolamine utilisation protein EutQ CLI_RS10545 PF03319 Ethanolamine utilisation protein EutN/carboxysome CLI_RS10565 PF10662 Ethanolamine utilisation - propanediol utilisation CLI_RS10570 PF00936 BMC domain CLI_RS10575 PF04055 Radical SAM superfamily CLI_RS10575 PF13187 4Fe-4S dicluster domain CLI_RS10580 PF01228 Glycine radical CLI_RS10580 PF02901 Pyruvate formate lyase-like CLI_RS10585 PF00465 Iron-containing alcohol dehydrogenase CLI_RS10585 PF00171 Aldehyde dehydrogenase family CLI_RS10590 PF00936 BMC domain CLI_RS10595 PF00936 BMC domain CLI_RS10615 PF07739 TipAS antibiotic-recognition domain CLI_RS10615 PF13411 MerR HTH family regulatory protein CLI_RS10620 PF00465 Iron-containing alcohol dehydrogenase CLI_RS10625 PF01554 MatE CLI_RS10630 PF07690 Major Facilitator Superfamily CLI_RS10635 PF00392 Bacterial regulatory proteins, gntR family CLI_RS10635 PF07729 FCD domain CLI_RS10660 PF09234 Domain of unknown function (DUF1963) CLI_RS10675 PF04203 Sortase domain CLI_RS10685 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS10690 PF00486 Transcriptional regulatory protein, C terminal CLI_RS10690 PF00072 Response regulator receiver domain CLI_RS10705 PF00005 ABC transporter CLI_RS10710 PF02687 FtsX-like permease family CLI_RS10715 PF01494 FAD binding domain CLI_RS10720 PF13443 Cro/C1-type HTH DNA-binding domain CLI_RS10730 PF00107 Zinc-binding dehydrogenase CLI_RS10730 PF08240 Alcohol dehydrogenase GroES-like domain CLI_RS10740 PF01761 3-dehydroquinate synthase CLI_RS10745 PF02687 FtsX-like permease family CLI_RS10750 PF00005 ABC transporter CLI_RS10760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI_RS10760 PF08279 HTH domain CLI_RS10760 PF05043 Mga helix-turn-helix domain CLI_RS10760 PF00874 PRD domain CLI_RS10765 PF03611 PTS system sugar-specific permease component CLI_RS10770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI_RS10775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI_RS10780 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLI_RS10800 PF14602 Hexapeptide repeat of succinyl-transferase CLI_RS10800 PF12464 Maltose acetyltransferase CLI_RS10810 PF00557 Metallopeptidase family M24 CLI_RS10810 PF01321 Creatinase/Prolidase N-terminal domain CLI_RS10815 PF00854 POT family CLI_RS10820 PF13649 Methyltransferase domain CLI_RS10825 PF12833 Helix-turn-helix domain CLI_RS10825 PF06445 GyrI-like small molecule binding domain CLI_RS10835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLI_RS10835 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS10905 PF02567 Phenazine biosynthesis-like protein CLI_RS10910 PF00392 Bacterial regulatory proteins, gntR family CLI_RS10910 PF00155 Aminotransferase class I and II CLI_RS10930 PF07859 alpha/beta hydrolase fold CLI_RS10940 PF13520 Amino acid permease CLI_RS10955 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS10965 PF00766 Electron transfer flavoprotein FAD-binding domain CLI_RS10965 PF13237 4Fe-4S dicluster domain CLI_RS10965 PF01012 Electron transfer flavoprotein domain CLI_RS10970 PF01012 Electron transfer flavoprotein domain CLI_RS10975 PF02770 Acyl-CoA dehydrogenase, middle domain CLI_RS10975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLI_RS10975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLI_RS10980 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS10985 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS10990 PF02515 CoA-transferase family III CLI_RS11010 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS11015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS11025 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CLI_RS11035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLI_RS11040 PF02447 GntP family permease CLI_RS11045 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLI_RS11050 PF07005 Sugar-binding N-terminal domain CLI_RS11050 PF17042 Nucleotide-binding C-terminal domain CLI_RS11055 PF08220 DeoR-like helix-turn-helix domain CLI_RS11055 PF00455 DeoR C terminal sensor domain CLI_RS11060 PF00583 Acetyltransferase (GNAT) family CLI_RS11075 PF08361 MAATS-type transcriptional repressor, C-terminal region CLI_RS11075 PF00440 Bacterial regulatory proteins, tetR family CLI_RS11095 PF00107 Zinc-binding dehydrogenase CLI_RS11095 PF08240 Alcohol dehydrogenase GroES-like domain CLI_RS11100 PF03063 Prismane/CO dehydrogenase family CLI_RS11105 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CLI_RS11110 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLI_RS11125 PF10609 NUBPL iron-transfer P-loop NTPase CLI_RS11140 PF00691 OmpA family CLI_RS11140 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLI_RS11145 PF01618 MotA/TolQ/ExbB proton channel family CLI_RS11150 PF04122 Putative cell wall binding repeat 2 CLI_RS11150 PF01520 N-acetylmuramoyl-L-alanine amidase CLI_RS11165 PF03169 OPT oligopeptide transporter protein CLI_RS11170 PF01546 Peptidase family M20/M25/M40 CLI_RS11170 PF07687 Peptidase dimerisation domain CLI_RS11175 PF01212 Beta-eliminating lyase CLI_RS11185 PF02595 Glycerate kinase family CLI_RS11190 PF00106 short chain dehydrogenase CLI_RS11195 PF12679 ABC-2 family transporter protein CLI_RS11200 PF00005 ABC transporter CLI_RS11205 PF13673 Acetyltransferase (GNAT) domain CLI_RS11210 PF01047 MarR family CLI_RS11220 PF10990 Protein of unknown function (DUF2809) CLI_RS11230 PF01266 FAD dependent oxidoreductase CLI_RS11230 PF04324 BFD-like [2Fe-2S] binding domain CLI_RS11235 PF09278 MerR, DNA binding CLI_RS11235 PF00376 MerR family regulatory protein CLI_RS11240 PF13520 Amino acid permease CLI_RS11245 PF01661 Macro domain CLI_RS11260 PF01047 MarR family CLI_RS11275 PF02110 Hydroxyethylthiazole kinase family CLI_RS11295 PF00753 Metallo-beta-lactamase superfamily CLI_RS11310 PF04055 Radical SAM superfamily CLI_RS11310 PF06968 Biotin and Thiamin Synthesis associated domain CLI_RS11315 PF02632 BioY family CLI_RS11325 PF01047 MarR family CLI_RS11335 PF00557 Metallopeptidase family M24 CLI_RS11335 PF01321 Creatinase/Prolidase N-terminal domain CLI_RS11340 PF00854 POT family CLI_RS11405 PF01641 SelR domain CLI_RS11410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLI_RS11410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLI_RS11415 PF00005 ABC transporter CLI_RS11415 PF00664 ABC transporter transmembrane region CLI_RS11435 PF00005 ABC transporter CLI_RS11440 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS11440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS11445 PF00072 Response regulator receiver domain CLI_RS11445 PF00486 Transcriptional regulatory protein, C terminal CLI_RS11465 PF01327 Polypeptide deformylase CLI_RS11490 PF00258 Flavodoxin CLI_RS11495 PF00171 Aldehyde dehydrogenase family CLI_RS11500 PF00042 Globin CLI_RS11500 PF00175 Oxidoreductase NAD-binding domain CLI_RS11500 PF00970 Oxidoreductase FAD-binding domain CLI_RS11515 PF01624 MutS domain I CLI_RS11515 PF05190 MutS family domain IV CLI_RS11515 PF00488 MutS domain V CLI_RS11515 PF05188 MutS domain II CLI_RS11515 PF05192 MutS domain III CLI_RS11560 PF01743 Poly A polymerase head domain CLI_RS11560 PF13735 tRNA nucleotidyltransferase domain 2 putative CLI_RS11560 PF12627 Probable RNA and SrmB- binding site of polymerase A CLI_RS11570 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLI_RS11590 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS11590 PF00672 HAMP domain CLI_RS11595 PF00072 Response regulator receiver domain CLI_RS11595 PF00486 Transcriptional regulatory protein, C terminal CLI_RS11615 PF01695 IstB-like ATP binding protein CLI_RS11620 PF00890 FAD binding domain CLI_RS11620 PF14537 Cytochrome c3 CLI_RS11645 PF00877 NlpC/P60 family CLI_RS11655 PF01381 Helix-turn-helix CLI_RS11715 PF04865 Baseplate J-like protein CLI_RS11755 PF09393 Phage tail tube protein CLI_RS11760 PF04984 Phage tail sheath protein subtilisin-like domain CLI_RS11760 PF17482 Phage tail sheath C-terminal domain CLI_RS11760 PF17481 Phage tail sheath protein beta-sandwich domain CLI_RS11825 PF03592 Terminase small subunit CLI_RS11875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLI_RS11875 PF09281 Taq polymerase, exonuclease CLI_RS11875 PF01367 5'-3' exonuclease, C-terminal SAM fold CLI_RS11875 PF00476 DNA polymerase family A CLI_RS11915 PF04542 Sigma-70 region 2 CLI_RS11915 PF04539 Sigma-70 region 3 CLI_RS11915 PF04545 Sigma-70, region 4 CLI_RS11940 PF01134 Glucose inhibited division protein A CLI_RS11950 PF04070 Domain of unknown function (DUF378) CLI_RS11955 PF00381 PTS HPr component phosphorylation site CLI_RS11960 PF00155 Aminotransferase class I and II CLI_RS11965 PF00892 EamA-like transporter family CLI_RS11975 PF01040 UbiA prenyltransferase family CLI_RS11980 PF04232 Stage V sporulation protein S (SpoVS) CLI_RS11985 PF12072 Domain of unknown function (DUF3552) CLI_RS11985 PF00013 KH domain CLI_RS11985 PF01966 HD domain CLI_RS11990 PF00154 recA bacterial DNA recombination protein CLI_RS11995 PF01066 CDP-alcohol phosphatidyltransferase CLI_RS12000 PF00919 Uncharacterized protein family UPF0004 CLI_RS12000 PF04055 Radical SAM superfamily CLI_RS12000 PF18693 TRAM domain CLI_RS12005 PF01580 FtsK/SpoIIIE family CLI_RS12005 PF17854 FtsK alpha domain CLI_RS12005 PF09397 Ftsk gamma domain CLI_RS12010 PF00574 Clp protease CLI_RS12015 PF00696 Amino acid kinase family CLI_RS12015 PF13840 ACT domain CLI_RS12025 PF05193 Peptidase M16 inactive domain CLI_RS12025 PF00675 Insulinase (Peptidase family M16) CLI_RS12030 PF03725 3' exoribonuclease family, domain 2 CLI_RS12030 PF00575 S1 RNA binding domain CLI_RS12030 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLI_RS12030 PF00013 KH domain CLI_RS12030 PF01138 3' exoribonuclease family, domain 1 CLI_RS12035 PF00312 Ribosomal protein S15 CLI_RS12040 PF06574 FAD synthetase CLI_RS12040 PF01687 Riboflavin kinase CLI_RS12045 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLI_RS12045 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLI_RS12050 PF01368 DHH family CLI_RS12050 PF02272 DHHA1 domain CLI_RS12055 PF02033 Ribosome-binding factor A CLI_RS12060 PF11987 Translation-initiation factor 2 CLI_RS12060 PF04760 Translation initiation factor IF-2, N-terminal region CLI_RS12060 PF00009 Elongation factor Tu GTP binding domain CLI_RS12065 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLI_RS12070 PF04296 Protein of unknown function (DUF448) CLI_RS12075 PF13184 NusA-like KH domain CLI_RS12075 PF08529 NusA N-terminal domain CLI_RS12075 PF00575 S1 RNA binding domain CLI_RS12080 PF02576 RimP N-terminal domain CLI_RS12080 PF17384 RimP C-terminal SH3 domain CLI_RS12085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLI_RS12085 PF14579 Helix-hairpin-helix motif CLI_RS12085 PF00929 Exonuclease CLI_RS12085 PF01336 OB-fold nucleic acid binding domain CLI_RS12085 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLI_RS12085 PF02811 PHP domain CLI_RS12085 PF11490 DNA polymerase III polC-type N-terminus II CLI_RS12090 PF04551 GcpE protein CLI_RS12095 PF17820 PDZ domain CLI_RS12095 PF02163 Peptidase family M50 CLI_RS12100 PF13288 DXP reductoisomerase C-terminal domain CLI_RS12100 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLI_RS12100 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLI_RS12125 PF01255 Putative undecaprenyl diphosphate synthase CLI_RS12130 PF01765 Ribosome recycling factor CLI_RS12135 PF00696 Amino acid kinase family CLI_RS12145 PF00889 Elongation factor TS CLI_RS12150 PF00318 Ribosomal protein S2 CLI_RS12155 PF08222 CodY helix-turn-helix domain CLI_RS12155 PF06018 CodY GAF-like domain CLI_RS12160 PF01131 DNA topoisomerase CLI_RS12160 PF01396 Topoisomerase DNA binding C4 zinc finger CLI_RS12160 PF01751 Toprim domain CLI_RS12165 PF18255 DNA processing protein A sterile alpha motif domain CLI_RS12165 PF02481 DNA recombination-mediator protein A CLI_RS12170 PF01078 Magnesium chelatase, subunit ChlI CLI_RS12170 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLI_RS12175 PF02021 Uncharacterised protein family UPF0102 CLI_RS12180 PF01351 Ribonuclease HII CLI_RS12185 PF01926 50S ribosome-binding GTPase CLI_RS12190 PF10502 Signal peptidase, peptidase S26 CLI_RS12195 PF01245 Ribosomal protein L19 CLI_RS12200 PF01746 tRNA (Guanine-1)-methyltransferase CLI_RS12205 PF05239 PRC-barrel domain CLI_RS12205 PF01782 RimM N-terminal domain CLI_RS12215 PF00886 Ribosomal protein S16 CLI_RS12220 PF02978 Signal peptide binding domain CLI_RS12220 PF00448 SRP54-type protein, GTPase domain CLI_RS12220 PF02881 SRP54-type protein, helical bundle domain CLI_RS12225 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CLI_RS12230 PF02881 SRP54-type protein, helical bundle domain CLI_RS12230 PF00448 SRP54-type protein, GTPase domain CLI_RS12235 PF06470 SMC proteins Flexible Hinge Domain CLI_RS12235 PF02463 RecF/RecN/SMC N terminal domain CLI_RS12250 PF00035 Double-stranded RNA binding motif CLI_RS12250 PF14622 Ribonuclease-III-like CLI_RS12255 PF00550 Phosphopantetheine attachment site CLI_RS12260 PF02504 Fatty acid synthesis protein CLI_RS12265 PF01783 Ribosomal L32p protein family CLI_RS12270 PF02620 Large ribosomal RNA subunit accumulation protein YceD CLI_RS12275 PF00871 Acetokinase family CLI_RS12280 PF01515 Phosphate acetyl/butaryl transferase CLI_RS12290 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS12295 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS12305 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS12315 PF13375 RnfC Barrel sandwich hybrid domain CLI_RS12315 PF13237 4Fe-4S dicluster domain CLI_RS12315 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS12315 PF10531 SLBB domain CLI_RS12325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS12325 PF02743 Cache domain CLI_RS12325 PF00672 HAMP domain CLI_RS12345 PF13520 Amino acid permease CLI_RS12365 PF05544 Proline racemase CLI_RS12375 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS12380 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS12385 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS12395 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS12405 PF13375 RnfC Barrel sandwich hybrid domain CLI_RS12405 PF12838 4Fe-4S dicluster domain CLI_RS12405 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS12410 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS12415 PF13237 4Fe-4S dicluster domain CLI_RS12415 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS12415 PF13375 RnfC Barrel sandwich hybrid domain CLI_RS12415 PF10531 SLBB domain CLI_RS12440 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS12445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS12445 PF13237 4Fe-4S dicluster domain CLI_RS12445 PF10531 SLBB domain CLI_RS12445 PF13375 RnfC Barrel sandwich hybrid domain CLI_RS12450 PF02954 Bacterial regulatory protein, Fis family CLI_RS12450 PF00989 PAS fold CLI_RS12450 PF00158 Sigma-54 interaction domain CLI_RS12455 PF05636 HIGH Nucleotidyl Transferase CLI_RS12470 PF01467 Cytidylyltransferase-like CLI_RS12480 PF17191 RecG wedge domain CLI_RS12480 PF00271 Helicase conserved C-terminal domain CLI_RS12480 PF00270 DEAD/DEAH box helicase CLI_RS12485 PF13684 Dihydroxyacetone kinase family CLI_RS12485 PF02734 DAK2 domain CLI_RS12490 PF03780 Asp23 family, cell envelope-related function CLI_RS12495 PF00830 Ribosomal L28 family CLI_RS12515 PF00834 Ribulose-phosphate 3 epimerase family CLI_RS12520 PF03193 RsgA GTPase CLI_RS12520 PF16745 RsgA N-terminal domain CLI_RS12525 PF03793 PASTA domain CLI_RS12525 PF00069 Protein kinase domain CLI_RS12535 PF04055 Radical SAM superfamily CLI_RS12540 PF01029 NusB family CLI_RS12540 PF01189 16S rRNA methyltransferase RsmB/F CLI_RS12545 PF04298 Putative neutral zinc metallopeptidase CLI_RS12550 PF00551 Formyl transferase CLI_RS12550 PF02911 Formyl transferase, C-terminal domain CLI_RS12555 PF01327 Polypeptide deformylase CLI_RS12560 PF00271 Helicase conserved C-terminal domain CLI_RS12560 PF17764 3′ DNA-binding domain (3′BD) CLI_RS12560 PF18074 Primosomal protein N C-terminal domain CLI_RS12560 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLI_RS12560 PF04851 Type III restriction enzyme, res subunit CLI_RS12565 PF02441 Flavoprotein CLI_RS12565 PF04127 DNA / pantothenate metabolism flavoprotein CLI_RS12570 PF01192 RNA polymerase Rpb6 CLI_RS12575 PF00625 Guanylate kinase CLI_RS12580 PF04025 Domain of unknown function (DUF370) CLI_RS12585 PF08340 Domain of unknown function (DUF1732) CLI_RS12585 PF03755 YicC-like family, N-terminal region CLI_RS12590 PF00710 Asparaginase, N-terminal CLI_RS12590 PF17763 Glutaminase/Asparaginase C-terminal domain CLI_RS12600 PF09547 Stage IV sporulation protein A (spore_IV_A) CLI_RS12610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLI_RS12610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLI_RS12615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLI_RS12615 PF01926 50S ribosome-binding GTPase CLI_RS12625 PF01895 PhoU domain CLI_RS12630 PF00005 ABC transporter CLI_RS12635 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS12640 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS12645 PF12849 PBP superfamily domain CLI_RS12650 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS12650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS12650 PF13426 PAS domain CLI_RS12650 PF00672 HAMP domain CLI_RS12655 PF00486 Transcriptional regulatory protein, C terminal CLI_RS12655 PF00072 Response regulator receiver domain CLI_RS12660 PF02578 Multi-copper polyphenol oxidoreductase laccase CLI_RS12665 PF03477 ATP cone domain CLI_RS12670 PF05239 PRC-barrel domain CLI_RS12675 PF04542 Sigma-70 region 2 CLI_RS12675 PF04539 Sigma-70 region 3 CLI_RS12675 PF04545 Sigma-70, region 4 CLI_RS12680 PF04542 Sigma-70 region 2 CLI_RS12680 PF04545 Sigma-70, region 4 CLI_RS12685 PF03419 Sporulation factor SpoIIGA CLI_RS12690 PF12327 FtsZ family, C-terminal domain CLI_RS12690 PF00091 Tubulin/FtsZ family, GTPase domain CLI_RS12695 PF02491 SHS2 domain inserted in FTSA CLI_RS12710 PF00437 Type II/IV secretion system protein CLI_RS12715 PF08501 Shikimate dehydrogenase substrate binding domain CLI_RS12715 PF01488 Shikimate / quinate 5-dehydrogenase CLI_RS12720 PF04545 Sigma-70, region 4 CLI_RS12720 PF04542 Sigma-70 region 2 CLI_RS12735 PF05239 PRC-barrel domain CLI_RS12735 PF09557 Domain of unknown function (DUF2382) CLI_RS12775 PF00905 Penicillin binding protein transpeptidase domain CLI_RS12780 PF00485 Phosphoribulokinase / Uridine kinase family CLI_RS12785 PF01136 Peptidase family U32 CLI_RS12785 PF16325 Peptidase family U32 C-terminal domain CLI_RS12790 PF01596 O-methyltransferase CLI_RS12795 PF02618 YceG-like family CLI_RS12800 PF03144 Elongation factor Tu domain 2 CLI_RS12800 PF00009 Elongation factor Tu GTP binding domain CLI_RS12800 PF00679 Elongation factor G C-terminus CLI_RS12805 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLI_RS12805 PF17770 Ribonuclease J C-terminal domain CLI_RS12805 PF00753 Metallo-beta-lactamase superfamily CLI_RS12810 PF01475 Ferric uptake regulator family CLI_RS12815 PF06949 Protein of unknown function (DUF1292) CLI_RS12820 PF03652 Holliday junction resolvase CLI_RS12825 PF06135 IreB regulatory phosphoprotein CLI_RS12830 PF01411 tRNA synthetases class II (A) CLI_RS12830 PF02272 DHHA1 domain CLI_RS12830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLI_RS12835 PF01594 AI-2E family transporter CLI_RS12845 PF01592 NifU-like N terminal domain CLI_RS12850 PF00266 Aminotransferase class-V CLI_RS12855 PF02082 Transcriptional regulator CLI_RS12860 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLI_RS12860 PF12002 MgsA AAA+ ATPase C terminal CLI_RS12860 PF16193 AAA C-terminal domain CLI_RS12875 PF02645 Uncharacterised protein, DegV family COG1307 CLI_RS12885 PF02423 Ornithine cyclodeaminase/mu-crystallin family CLI_RS12890 PF01235 Sodium:alanine symporter family CLI_RS12895 PF01235 Sodium:alanine symporter family CLI_RS12910 PF00586 AIR synthase related protein, N-terminal domain CLI_RS12910 PF02769 AIR synthase related protein, C-terminal domain CLI_RS12910 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLI_RS12920 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLI_RS12920 PF00391 PEP-utilising enzyme, mobile domain CLI_RS12935 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLI_RS12935 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLI_RS12945 PF00550 Phosphopantetheine attachment site CLI_RS12945 PF00668 Condensation domain CLI_RS12945 PF00501 AMP-binding enzyme CLI_RS12945 PF13193 AMP-binding enzyme C-terminal domain CLI_RS12975 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI_RS12975 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI_RS12980 PF00696 Amino acid kinase family CLI_RS12985 PF00464 Serine hydroxymethyltransferase CLI_RS12990 PF06738 Putative threonine/serine exporter CLI_RS13000 PF02583 Metal-sensitive transcriptional repressor CLI_RS13015 PF01467 Cytidylyltransferase-like CLI_RS13020 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLI_RS13020 PF00056 lactate/malate dehydrogenase, NAD binding domain CLI_RS13030 PF02811 PHP domain CLI_RS13035 PF02127 Aminopeptidase I zinc metalloprotease (M18) CLI_RS13040 PF01544 CorA-like Mg2+ transporter protein CLI_RS13045 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLI_RS13050 PF02603 HPr Serine kinase N terminus CLI_RS13050 PF07475 HPr Serine kinase C-terminal domain CLI_RS13055 PF05979 Bacterial protein of unknown function (DUF896) CLI_RS13060 PF09335 SNARE associated Golgi protein CLI_RS13065 PF09335 SNARE associated Golgi protein CLI_RS13085 PF00535 Glycosyl transferase family 2 CLI_RS13090 PF00581 Rhodanese-like domain CLI_RS13095 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CLI_RS13110 PF00258 Flavodoxin CLI_RS13110 PF00753 Metallo-beta-lactamase superfamily CLI_RS13120 PF01156 Inosine-uridine preferring nucleoside hydrolase CLI_RS13125 PF01327 Polypeptide deformylase CLI_RS13130 PF01813 ATP synthase subunit D CLI_RS13135 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI_RS13135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI_RS13140 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI_RS13140 PF16886 ATPsynthase alpha/beta subunit N-term extension CLI_RS13140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI_RS13145 PF01990 ATP synthase (F/14-kDa) subunit CLI_RS13155 PF01991 ATP synthase (E/31 kDa) subunit CLI_RS13160 PF00137 ATP synthase subunit C CLI_RS13165 PF01496 V-type ATPase 116kDa subunit family CLI_RS13195 PF00689 Cation transporting ATPase, C-terminus CLI_RS13195 PF00690 Cation transporter/ATPase, N-terminus CLI_RS13200 PF07085 DRTGG domain CLI_RS13200 PF01368 DHH family CLI_RS13200 PF00571 CBS domain CLI_RS13200 PF02833 DHHA2 domain CLI_RS13210 PF00460 Flagella basal body rod protein CLI_RS13210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI_RS13215 PF00460 Flagella basal body rod protein CLI_RS13215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI_RS13230 PF04539 Sigma-70 region 3 CLI_RS13230 PF04542 Sigma-70 region 2 CLI_RS13230 PF04545 Sigma-70, region 4 CLI_RS13240 PF10609 NUBPL iron-transfer P-loop NTPase CLI_RS13245 PF00448 SRP54-type protein, GTPase domain CLI_RS13250 PF00771 FHIPEP family CLI_RS13255 PF01312 FlhB HrpN YscU SpaS Family CLI_RS13260 PF01313 Bacterial export proteins, family 3 CLI_RS13265 PF00813 FliP family CLI_RS13280 PF00691 OmpA family CLI_RS13280 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLI_RS13285 PF01618 MotA/TolQ/ExbB proton channel family CLI_RS13290 PF06289 Flagellar and Swarming motility proteins CLI_RS13295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI_RS13295 PF00460 Flagella basal body rod protein CLI_RS13305 PF03963 Flagellar hook capping protein - N-terminal region CLI_RS13320 PF18269 T3SS EscN ATPase C-terminal domain CLI_RS13320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI_RS13320 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI_RS13330 PF01706 FliG C-terminal domain CLI_RS13330 PF14841 FliG middle domain CLI_RS13330 PF14842 FliG N-terminal domain CLI_RS13340 PF02049 Flagellar hook-basal body complex protein FliE CLI_RS13345 PF00460 Flagella basal body rod protein CLI_RS13345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI_RS13350 PF00460 Flagella basal body rod protein CLI_RS13355 PF00700 Bacterial flagellin C-terminal helical region CLI_RS13355 PF00669 Bacterial flagellin N-terminal helical region CLI_RS13365 PF14698 Argininosuccinate lyase C-terminal CLI_RS13365 PF00206 Lyase CLI_RS13370 PF00764 Arginosuccinate synthase CLI_RS13385 PF13396 Phospholipase_D-nuclease N-terminal CLI_RS13385 PF13091 PLD-like domain CLI_RS13390 PF06081 Aromatic acid exporter family member 1 CLI_RS13410 PF16363 GDP-mannose 4,6 dehydratase CLI_RS13415 PF08666 SAF domain CLI_RS13415 PF03102 NeuB family CLI_RS13420 PF02348 Cytidylyltransferase CLI_RS13430 PF07922 Glycosyltransferase family 52 CLI_RS13440 PF03275 UDP-galactopyranose mutase CLI_RS13445 PF02397 Bacterial sugar transferase CLI_RS13450 PF13614 AAA domain CLI_RS13460 PF02706 Chain length determinant protein CLI_RS13460 PF13807 G-rich domain on putative tyrosine kinase CLI_RS13465 PF03816 Cell envelope-related transcriptional attenuator domain CLI_RS13485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS13490 PF00700 Bacterial flagellin C-terminal helical region CLI_RS13490 PF00669 Bacterial flagellin N-terminal helical region CLI_RS13515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI_RS13520 PF01370 NAD dependent epimerase/dehydratase family CLI_RS13525 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS13525 PF17836 PglD N-terminal domain CLI_RS13535 PF13472 GDSL-like Lipase/Acylhydrolase family CLI_RS13535 PF02348 Cytidylyltransferase CLI_RS13540 PF02142 MGS-like domain CLI_RS13540 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLI_RS13540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLI_RS13545 PF08666 SAF domain CLI_RS13545 PF03102 NeuB family CLI_RS13550 PF13649 Methyltransferase domain CLI_RS13555 PF02350 UDP-N-acetylglucosamine 2-epimerase CLI_RS13560 PF00483 Nucleotidyl transferase CLI_RS13570 PF01973 Protein of unknown function DUF115 CLI_RS13575 PF00669 Bacterial flagellin N-terminal helical region CLI_RS13575 PF00700 Bacterial flagellin C-terminal helical region CLI_RS13585 PF02465 Flagellar hook-associated protein 2 N-terminus CLI_RS13585 PF07195 Flagellar hook-associated protein 2 C-terminus CLI_RS13585 PF07196 Flagellin hook IN motif CLI_RS13590 PF02561 Flagellar protein FliS CLI_RS13605 PF02599 Global regulator protein family CLI_RS13610 PF02623 FliW protein CLI_RS13620 PF00460 Flagella basal body rod protein CLI_RS13620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI_RS13635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLI_RS13635 PF04509 CheC-like family CLI_RS13640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLI_RS13640 PF02154 Flagellar motor switch protein FliM CLI_RS13645 PF01584 CheW-like domain CLI_RS13650 PF00072 Response regulator receiver domain CLI_RS13655 PF04509 CheC-like family CLI_RS13660 PF01627 Hpt domain CLI_RS13660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS13660 PF07194 P2 response regulator binding domain CLI_RS13660 PF01584 CheW-like domain CLI_RS13660 PF02895 Signal transducing histidine kinase, homodimeric domain CLI_RS13665 PF03705 CheR methyltransferase, all-alpha domain CLI_RS13665 PF01739 CheR methyltransferase, SAM binding domain CLI_RS13670 PF01339 CheB methylesterase CLI_RS13670 PF00072 Response regulator receiver domain CLI_RS13675 PF03975 CheD chemotactic sensory transduction CLI_RS13680 PF01584 CheW-like domain CLI_RS13690 PF02378 Phosphotransferase system, EIIC CLI_RS13690 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS13690 PF00367 phosphotransferase system, EIIB CLI_RS13695 PF03123 CAT RNA binding domain CLI_RS13695 PF00874 PRD domain CLI_RS13700 PF01063 Amino-transferase class IV CLI_RS13720 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLI_RS13720 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLI_RS13720 PF10371 Domain of unknown function CLI_RS13720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI_RS13720 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLI_RS13725 PF03033 Glycosyltransferase family 28 N-terminal domain CLI_RS13725 PF04101 Glycosyltransferase family 28 C-terminal domain CLI_RS13735 PF00989 PAS fold CLI_RS13735 PF00672 HAMP domain CLI_RS13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS13735 PF18698 Histidine kinase sensor domain CLI_RS13735 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS13740 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLI_RS13740 PF17768 RecJ OB domain CLI_RS13740 PF02272 DHHA1 domain CLI_RS13740 PF01368 DHH family CLI_RS13750 PF00578 AhpC/TSA family CLI_RS13770 PF04309 Glycerol-3-phosphate responsive antiterminator CLI_RS13775 PF03989 DNA gyrase C-terminal domain, beta-propeller CLI_RS13775 PF00521 DNA gyrase/topoisomerase IV, subunit A CLI_RS13780 PF00204 DNA gyrase B CLI_RS13780 PF00986 DNA gyrase B subunit, carboxyl terminus CLI_RS13780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS13780 PF01751 Toprim domain CLI_RS13790 PF00999 Sodium/hydrogen exchanger family CLI_RS13805 PF03422 Carbohydrate binding module (family 6) CLI_RS13805 PF00457 Glycosyl hydrolases family 11 CLI_RS13805 PF01522 Polysaccharide deacetylase CLI_RS13815 PF16363 GDP-mannose 4,6 dehydratase CLI_RS13820 PF00258 Flavodoxin CLI_RS13830 PF12833 Helix-turn-helix domain CLI_RS13835 PF17676 LD-carboxypeptidase C-terminal domain CLI_RS13835 PF02016 LD-carboxypeptidase N-terminal domain CLI_RS13840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLI_RS13840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLI_RS13845 PF00230 Major intrinsic protein CLI_RS13850 PF01906 Putative heavy-metal-binding CLI_RS13865 PF00005 ABC transporter CLI_RS13870 PF00392 Bacterial regulatory proteins, gntR family CLI_RS13875 PF04892 VanZ like family CLI_RS13880 PF03063 Prismane/CO dehydrogenase family CLI_RS13890 PF02073 Thermophilic metalloprotease (M29) CLI_RS13900 PF03845 Spore germination protein CLI_RS13905 PF03323 Bacillus/Clostridium GerA spore germination protein CLI_RS13915 PF01174 SNO glutamine amidotransferase family CLI_RS13920 PF01680 SOR/SNZ family CLI_RS13925 PF01522 Polysaccharide deacetylase CLI_RS13930 PF00271 Helicase conserved C-terminal domain CLI_RS13930 PF00270 DEAD/DEAH box helicase CLI_RS13945 PF00672 HAMP domain CLI_RS13945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS13945 PF17202 Single cache domain 3 CLI_RS13955 PF00037 4Fe-4S binding domain CLI_RS13960 PF04960 Glutaminase CLI_RS13965 PF06725 3D domain CLI_RS13965 PF01476 LysM domain CLI_RS13975 PF02743 Cache domain CLI_RS13975 PF00672 HAMP domain CLI_RS13975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS13985 PF00268 Ribonucleotide reductase, small chain CLI_RS13990 PF00317 Ribonucleotide reductase, all-alpha domain CLI_RS13990 PF03477 ATP cone domain CLI_RS13990 PF02867 Ribonucleotide reductase, barrel domain CLI_RS14010 PF00817 impB/mucB/samB family CLI_RS14010 PF11799 impB/mucB/samB family C-terminal domain CLI_RS14010 PF11798 IMS family HHH motif CLI_RS14015 PF01180 Dihydroorotate dehydrogenase CLI_RS14020 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS14020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI_RS14025 PF00156 Phosphoribosyl transferase domain CLI_RS14045 PF17755 UvrA DNA-binding domain CLI_RS14045 PF17760 UvrA interaction domain CLI_RS14045 PF00005 ABC transporter CLI_RS14065 PF12729 Four helix bundle sensory module for signal transduction CLI_RS14065 PF00672 HAMP domain CLI_RS14065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS14070 PF13344 Haloacid dehalogenase-like hydrolase CLI_RS14070 PF00293 NUDIX domain CLI_RS14075 PF01475 Ferric uptake regulator family CLI_RS14085 PF00041 Fibronectin type III domain CLI_RS14085 PF00704 Glycosyl hydrolases family 18 CLI_RS14090 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLI_RS14095 PF01979 Amidohydrolase family CLI_RS14100 PF00392 Bacterial regulatory proteins, gntR family CLI_RS14100 PF07702 UTRA domain CLI_RS14115 PF03123 CAT RNA binding domain CLI_RS14115 PF00874 PRD domain CLI_RS14120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS14125 PF00367 phosphotransferase system, EIIB CLI_RS14125 PF02378 Phosphotransferase system, EIIC CLI_RS14130 PF01554 MatE CLI_RS14135 PF01554 MatE CLI_RS14140 PF00753 Metallo-beta-lactamase superfamily CLI_RS14140 PF00258 Flavodoxin CLI_RS14145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLI_RS14145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLI_RS14145 PF02770 Acyl-CoA dehydrogenase, middle domain CLI_RS14150 PF13333 Integrase core domain CLI_RS14150 PF00665 Integrase core domain CLI_RS14155 PF01144 Coenzyme A transferase CLI_RS14160 PF01144 Coenzyme A transferase CLI_RS14165 PF12804 MobA-like NTP transferase domain CLI_RS14170 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI_RS14170 PF01799 [2Fe-2S] binding domain CLI_RS14180 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLI_RS14180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLI_RS14185 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI_RS14185 PF02378 Phosphotransferase system, EIIC CLI_RS14185 PF00367 phosphotransferase system, EIIB CLI_RS14190 PF00232 Glycosyl hydrolase family 1 CLI_RS14195 PF03123 CAT RNA binding domain CLI_RS14195 PF00874 PRD domain CLI_RS14200 PF00999 Sodium/hydrogen exchanger family CLI_RS14215 PF04055 Radical SAM superfamily CLI_RS14220 PF12848 ABC transporter CLI_RS14220 PF16326 ABC transporter C-terminal domain CLI_RS14220 PF00005 ABC transporter CLI_RS14235 PF05958 tRNA (Uracil-5-)-methyltransferase CLI_RS14245 PF00884 Sulfatase CLI_RS14250 PF01925 Sulfite exporter TauE/SafE CLI_RS14255 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLI_RS14260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLI_RS14260 PF00925 GTP cyclohydrolase II CLI_RS14265 PF00677 Lumazine binding domain CLI_RS14270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI_RS14270 PF01872 RibD C-terminal domain CLI_RS14275 PF01546 Peptidase family M20/M25/M40 CLI_RS14275 PF07687 Peptidase dimerisation domain CLI_RS14280 PF00753 Metallo-beta-lactamase superfamily CLI_RS14280 PF16123 Hydroxyacylglutathione hydrolase C-terminus CLI_RS14285 PF00689 Cation transporting ATPase, C-terminus CLI_RS14285 PF00690 Cation transporter/ATPase, N-terminus CLI_RS14300 PF03323 Bacillus/Clostridium GerA spore germination protein CLI_RS14310 PF02843 Phosphoribosylglycinamide synthetase, C domain CLI_RS14310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLI_RS14310 PF02844 Phosphoribosylglycinamide synthetase, N domain CLI_RS14315 PF02142 MGS-like domain CLI_RS14315 PF01808 AICARFT/IMPCHase bienzyme CLI_RS14320 PF00551 Formyl transferase CLI_RS14325 PF00586 AIR synthase related protein, N-terminal domain CLI_RS14325 PF02769 AIR synthase related protein, C-terminal domain CLI_RS14330 PF00156 Phosphoribosyl transferase domain CLI_RS14335 PF01259 SAICAR synthetase CLI_RS14340 PF00731 AIR carboxylase CLI_RS14350 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI_RS14350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLI_RS14350 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLI_RS14350 PF01799 [2Fe-2S] binding domain CLI_RS14355 PF07687 Peptidase dimerisation domain CLI_RS14355 PF01546 Peptidase family M20/M25/M40 CLI_RS14360 PF01979 Amidohydrolase family CLI_RS14365 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS14365 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI_RS14370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI_RS14370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI_RS14375 PF01979 Amidohydrolase family CLI_RS14380 PF00860 Permease family CLI_RS14385 PF00291 Pyridoxal-phosphate dependent enzyme CLI_RS14390 PF00158 Sigma-54 interaction domain CLI_RS14390 PF02954 Bacterial regulatory protein, Fis family CLI_RS14390 PF13188 PAS domain CLI_RS14400 PF12804 MobA-like NTP transferase domain CLI_RS14400 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS14405 PF02625 XdhC and CoxI family CLI_RS14405 PF13478 XdhC Rossmann domain CLI_RS14420 PF01032 FecCD transport family CLI_RS14425 PF00005 ABC transporter CLI_RS14450 PF00860 Permease family CLI_RS14455 PF01235 Sodium:alanine symporter family CLI_RS14460 PF13538 UvrD-like helicase C-terminal domain CLI_RS14465 PF00107 Zinc-binding dehydrogenase CLI_RS14465 PF08240 Alcohol dehydrogenase GroES-like domain CLI_RS14470 PF02954 Bacterial regulatory protein, Fis family CLI_RS14470 PF13426 PAS domain CLI_RS14470 PF00158 Sigma-54 interaction domain CLI_RS14480 PF01546 Peptidase family M20/M25/M40 CLI_RS14485 PF13185 GAF domain CLI_RS14490 PF00571 CBS domain CLI_RS14490 PF03471 Transporter associated domain CLI_RS14490 PF01595 Cyclin M transmembrane N-terminal domain CLI_RS14495 PF01910 Thiamine-binding protein CLI_RS14500 PF01964 Radical SAM ThiC family CLI_RS14505 PF00156 Phosphoribosyl transferase domain CLI_RS14510 PF04456 Protein of unknown function (DUF503) CLI_RS14525 PF00005 ABC transporter CLI_RS14530 PF00392 Bacterial regulatory proteins, gntR family CLI_RS14535 PF17099 Tryptophan transporter TrpP CLI_RS14540 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLI_RS14550 PF00325 Bacterial regulatory proteins, crp family CLI_RS14550 PF00027 Cyclic nucleotide-binding domain CLI_RS14555 PF07486 Cell Wall Hydrolase CLI_RS14570 PF01061 ABC-2 type transporter CLI_RS14575 PF03009 Glycerophosphoryl diester phosphodiesterase family CLI_RS14585 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLI_RS14590 PF01595 Cyclin M transmembrane N-terminal domain CLI_RS14590 PF03471 Transporter associated domain CLI_RS14590 PF00571 CBS domain CLI_RS14600 PF01784 NIF3 (NGG1p interacting factor 3) CLI_RS14615 PF03979 Sigma-70 factor, region 1.1 CLI_RS14615 PF00140 Sigma-70 factor, region 1.2 CLI_RS14615 PF04542 Sigma-70 region 2 CLI_RS14615 PF04539 Sigma-70 region 3 CLI_RS14615 PF04545 Sigma-70, region 4 CLI_RS14620 PF08275 DNA primase catalytic core, N-terminal domain CLI_RS14620 PF01807 CHC2 zinc finger CLI_RS14620 PF10410 DnaB-helicase binding domain of primase CLI_RS14625 PF13286 Phosphohydrolase-associated domain CLI_RS14625 PF01966 HD domain CLI_RS14635 PF02896 PEP-utilising enzyme, TIM barrel domain CLI_RS14635 PF00391 PEP-utilising enzyme, mobile domain CLI_RS14635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLI_RS14640 PF00571 CBS domain CLI_RS14640 PF08279 HTH domain CLI_RS14645 PF00889 Elongation factor TS CLI_RS14650 PF11967 Recombination protein O N terminal CLI_RS14650 PF02565 Recombination protein O C terminal CLI_RS14655 PF01926 50S ribosome-binding GTPase CLI_RS14655 PF07650 KH domain CLI_RS14660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI_RS14670 PF02130 Uncharacterized protein family UPF0054 CLI_RS14675 PF07698 7TM receptor with intracellular HD hydrolase CLI_RS14675 PF01966 HD domain CLI_RS14675 PF07697 7TM-HD extracellular CLI_RS14690 PF09424 Yqey-like protein CLI_RS14695 PF01165 Ribosomal protein S21 CLI_RS14700 PF01230 HIT domain CLI_RS14705 PF00919 Uncharacterized protein family UPF0004 CLI_RS14705 PF04055 Radical SAM superfamily CLI_RS14705 PF01938 TRAM domain CLI_RS14710 PF04452 RNA methyltransferase CLI_RS14720 PF00684 DnaJ central domain CLI_RS14720 PF01556 DnaJ C terminal domain CLI_RS14720 PF00226 DnaJ domain CLI_RS14725 PF00012 Hsp70 protein CLI_RS14730 PF01025 GrpE CLI_RS14735 PF01628 HrcA protein C terminal domain CLI_RS14740 PF06969 HemN C-terminal domain CLI_RS14740 PF04055 Radical SAM superfamily CLI_RS14745 PF00679 Elongation factor G C-terminus CLI_RS14745 PF03144 Elongation factor Tu domain 2 CLI_RS14745 PF06421 GTP-binding protein LepA C-terminus CLI_RS14745 PF00009 Elongation factor Tu GTP binding domain CLI_RS14760 PF03418 Germination protease CLI_RS14765 PF01649 Ribosomal protein S20 CLI_RS14785 PF00690 Cation transporter/ATPase, N-terminus CLI_RS14785 PF00689 Cation transporting ATPase, C-terminus CLI_RS14790 PF07556 Protein of unknown function (DUF1538) CLI_RS14800 PF00009 Elongation factor Tu GTP binding domain CLI_RS14800 PF09105 Elongation factor SelB, winged helix CLI_RS14800 PF09106 Elongation factor SelB, winged helix CLI_RS14800 PF09107 Elongation factor SelB, winged helix CLI_RS14800 PF03144 Elongation factor Tu domain 2 CLI_RS14805 PF03841 L-seryl-tRNA selenium transferase CLI_RS14805 PF12390 Selenocysteine synthase N terminal CLI_RS14810 PF00586 AIR synthase related protein, N-terminal domain CLI_RS14810 PF02769 AIR synthase related protein, C-terminal domain CLI_RS14820 PF00768 D-alanyl-D-alanine carboxypeptidase CLI_RS14820 PF07943 Penicillin-binding protein 5, C-terminal domain CLI_RS14825 PF01479 S4 domain CLI_RS14825 PF00849 RNA pseudouridylate synthase CLI_RS14830 PF01042 Endoribonuclease L-PSP CLI_RS14835 PF03816 Cell envelope-related transcriptional attenuator domain CLI_RS14840 PF01966 HD domain CLI_RS14845 PF01467 Cytidylyltransferase-like CLI_RS14850 PF01985 CRS1 / YhbY (CRM) domain CLI_RS14855 PF01926 50S ribosome-binding GTPase CLI_RS14855 PF09269 Domain of unknown function (DUF1967) CLI_RS14855 PF01018 GTP1/OBG CLI_RS14860 PF01016 Ribosomal L27 protein CLI_RS14870 PF00829 Ribosomal prokaryotic L21 protein CLI_RS14875 PF10150 Ribonuclease E/G family CLI_RS14875 PF00575 S1 RNA binding domain CLI_RS14890 PF02163 Peptidase family M50 CLI_RS14890 PF00571 CBS domain CLI_RS14895 PF04225 Opacity-associated protein A LysM-like domain CLI_RS14895 PF01551 Peptidase family M23 CLI_RS14900 PF01098 Cell cycle protein CLI_RS14905 PF03776 Septum formation topological specificity factor MinE CLI_RS14910 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLI_RS14915 PF03775 Septum formation inhibitor MinC, C-terminal domain CLI_RS14920 PF03717 Penicillin-binding Protein dimerisation domain CLI_RS14920 PF00905 Penicillin binding protein transpeptidase domain CLI_RS14940 PF04002 RadC-like JAB domain CLI_RS14945 PF02545 Maf-like protein CLI_RS14970 PF13291 ACT domain CLI_RS14990 PF01121 Dephospho-CoA kinase CLI_RS14995 PF01367 5'-3' exonuclease, C-terminal SAM fold CLI_RS14995 PF00476 DNA polymerase family A CLI_RS14995 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLI_RS15000 PF01264 Chorismate synthase CLI_RS15140 PF01695 IstB-like ATP binding protein CLI_RS15175 PF03062 MBOAT, membrane-bound O-acyltransferase family CLI_RS15185 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLI_RS15215 PF00152 tRNA synthetases class II (D, K and N) CLI_RS15215 PF01336 OB-fold nucleic acid binding domain CLI_RS15215 PF02938 GAD domain CLI_RS15220 PF13393 Histidyl-tRNA synthetase CLI_RS15220 PF03129 Anticodon binding domain CLI_RS15225 PF04055 Radical SAM superfamily CLI_RS15230 PF00753 Metallo-beta-lactamase superfamily CLI_RS15235 PF02580 D-Tyr-tRNA(Tyr) deacylase CLI_RS15240 PF04607 Region found in RelA / SpoT proteins CLI_RS15240 PF02824 TGS domain CLI_RS15240 PF13291 ACT domain CLI_RS15245 PF00156 Phosphoribosyl transferase domain CLI_RS15255 PF07549 SecD/SecF GG Motif CLI_RS15255 PF02355 Protein export membrane protein CLI_RS15260 PF02355 Protein export membrane protein CLI_RS15260 PF07549 SecD/SecF GG Motif CLI_RS15280 PF02699 Preprotein translocase subunit CLI_RS15285 PF01702 Queuine tRNA-ribosyltransferase CLI_RS15290 PF02547 Queuosine biosynthesis protein CLI_RS15295 PF05491 RuvB C-terminal winged helix domain CLI_RS15295 PF17864 RuvB AAA lid domain CLI_RS15295 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLI_RS15300 PF01330 RuvA N terminal domain CLI_RS15300 PF07499 RuvA, C-terminal domain CLI_RS15310 PF01709 Transcriptional regulator CLI_RS15315 PF09186 Domain of unknown function (DUF1949) CLI_RS15315 PF01205 Uncharacterized protein family UPF0029 CLI_RS15325 PF00155 Aminotransferase class I and II CLI_RS15325 PF00392 Bacterial regulatory proteins, gntR family CLI_RS15340 PF00301 Rubredoxin CLI_RS15345 PF16360 GTP-binding GTPase Middle Region CLI_RS15345 PF13167 GTP-binding GTPase N-terminal CLI_RS15345 PF01926 50S ribosome-binding GTPase CLI_RS15350 PF00156 Phosphoribosyl transferase domain CLI_RS15360 PF00905 Penicillin binding protein transpeptidase domain CLI_RS15360 PF00912 Transglycosylase CLI_RS15365 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLI_RS15370 PF07451 Stage V sporulation protein AD (SpoVAD) CLI_RS15375 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLI_RS15380 PF04542 Sigma-70 region 2 CLI_RS15380 PF04539 Sigma-70 region 3 CLI_RS15380 PF04545 Sigma-70, region 4 CLI_RS15385 PF13581 Histidine kinase-like ATPase domain CLI_RS15390 PF01740 STAS domain CLI_RS15395 PF02384 N-6 DNA Methylase CLI_RS15400 PF01522 Polysaccharide deacetylase CLI_RS15405 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLI_RS15410 PF02397 Bacterial sugar transferase CLI_RS15420 PF03023 Lipid II flippase MurJ CLI_RS15430 PF00534 Glycosyl transferases group 1 CLI_RS15430 PF13439 Glycosyltransferase Family 4 CLI_RS15440 PF13579 Glycosyl transferase 4-like domain CLI_RS15445 PF02350 UDP-N-acetylglucosamine 2-epimerase CLI_RS15450 PF13439 Glycosyltransferase Family 4 CLI_RS15450 PF00534 Glycosyl transferases group 1 CLI_RS15480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLI_RS15480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLI_RS15485 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLI_RS15485 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLI_RS15485 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLI_RS15490 PF02719 Polysaccharide biosynthesis protein CLI_RS15495 PF01520 N-acetylmuramoyl-L-alanine amidase CLI_RS15495 PF04122 Putative cell wall binding repeat 2 CLI_RS15500 PF01520 N-acetylmuramoyl-L-alanine amidase CLI_RS15500 PF00395 S-layer homology domain CLI_RS15510 PF05036 Sporulation related domain CLI_RS15510 PF08239 Bacterial SH3 domain CLI_RS15510 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLI_RS15515 PF00483 Nucleotidyl transferase CLI_RS15525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI_RS15525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI_RS15525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI_RS15525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLI_RS15530 PF14693 Ribosomal protein TL5, C-terminal domain CLI_RS15530 PF01386 Ribosomal L25p family CLI_RS15535 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLI_RS15535 PF01276 Orn/Lys/Arg decarboxylase, major domain CLI_RS15545 PF01515 Phosphate acetyl/butaryl transferase CLI_RS15550 PF01070 FMN-dependent dehydrogenase CLI_RS15555 PF04463 Protein of unknown function (DUF523) CLI_RS15560 PF01713 Smr domain CLI_RS15560 PF00488 MutS domain V CLI_RS15565 PF12392 Collagenase CLI_RS15565 PF01136 Peptidase family U32 CLI_RS15590 PF00535 Glycosyl transferase family 2 CLI_RS15590 PF13181 Tetratricopeptide repeat CLI_RS15600 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLI_RS15600 PF01588 Putative tRNA binding domain CLI_RS15600 PF03147 Ferredoxin-fold anticodon binding domain CLI_RS15600 PF03484 tRNA synthetase B5 domain CLI_RS15600 PF03483 B3/4 domain CLI_RS15605 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLI_RS15605 PF01409 tRNA synthetases class II core domain (F) CLI_RS15610 PF00588 SpoU rRNA Methylase family CLI_RS15610 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLI_RS15615 PF02254 TrkA-N domain CLI_RS15615 PF02080 TrkA-C domain CLI_RS15620 PF02386 Cation transport protein CLI_RS15625 PF00453 Ribosomal protein L20 CLI_RS15630 PF01632 Ribosomal protein L35 CLI_RS15635 PF05198 Translation initiation factor IF-3, N-terminal domain CLI_RS15635 PF00707 Translation initiation factor IF-3, C-terminal domain CLI_RS15640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLI_RS15640 PF03129 Anticodon binding domain CLI_RS15640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS15640 PF02824 TGS domain CLI_RS15660 PF00005 ABC transporter CLI_RS15660 PF13732 Domain of unknown function (DUF4162) CLI_RS15690 PF01430 Hsp33 protein CLI_RS15695 PF13649 Methyltransferase domain CLI_RS15705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI_RS15705 PF00005 ABC transporter CLI_RS15710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI_RS15710 PF00005 ABC transporter CLI_RS15715 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS15715 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI_RS15720 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS15725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI_RS15730 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLI_RS15730 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLI_RS15735 PF00701 Dihydrodipicolinate synthetase family CLI_RS15740 PF01113 Dihydrodipicolinate reductase, N-terminus CLI_RS15740 PF05173 Dihydrodipicolinate reductase, C-terminus CLI_RS15745 PF00155 Aminotransferase class I and II CLI_RS15750 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CLI_RS15750 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS15750 PF14602 Hexapeptide repeat of succinyl-transferase CLI_RS15765 PF01522 Polysaccharide deacetylase CLI_RS15785 PF08245 Mur ligase middle domain CLI_RS15785 PF02875 Mur ligase family, glutamate ligase domain CLI_RS15790 PF10458 Valyl tRNA synthetase tRNA binding arm CLI_RS15790 PF00133 tRNA synthetases class I (I, L, M and V) CLI_RS15790 PF08264 Anticodon-binding domain of tRNA CLI_RS15795 PF00583 Acetyltransferase (GNAT) family CLI_RS15800 PF00082 Subtilase family CLI_RS15815 PF04055 Radical SAM superfamily CLI_RS15815 PF06463 Molybdenum Cofactor Synthesis C CLI_RS15825 PF00664 ABC transporter transmembrane region CLI_RS15825 PF00005 ABC transporter CLI_RS15830 PF00005 ABC transporter CLI_RS15850 PF01381 Helix-turn-helix CLI_RS15870 PF02534 Type IV secretory system Conjugative DNA transfer CLI_RS15880 PF00239 Resolvase, N terminal domain CLI_RS15880 PF02796 Helix-turn-helix domain of resolvase CLI_RS15900 PF01510 N-acetylmuramoyl-L-alanine amidase CLI_RS15905 PF05105 Bacteriophage holin family CLI_RS15975 PF00574 Clp protease CLI_RS16015 PF00589 Phage integrase family CLI_RS16055 PF00145 C-5 cytosine-specific DNA methylase CLI_RS16120 PF01381 Helix-turn-helix CLI_RS16125 PF00239 Resolvase, N terminal domain CLI_RS16125 PF02796 Helix-turn-helix domain of resolvase CLI_RS16140 PF00005 ABC transporter CLI_RS16145 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS16160 PF02631 RecX family CLI_RS16165 PF05193 Peptidase M16 inactive domain CLI_RS16165 PF00675 Insulinase (Peptidase family M16) CLI_RS16190 PF06865 Pyrimidine/purine nucleoside phosphorylase CLI_RS16195 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLI_RS16195 PF03807 NADP oxidoreductase coenzyme F420-dependent CLI_RS16200 PF01228 Glycine radical CLI_RS16200 PF02901 Pyruvate formate lyase-like CLI_RS16205 PF04055 Radical SAM superfamily CLI_RS16215 PF01653 NAD-dependent DNA ligase adenylation domain CLI_RS16215 PF03120 NAD-dependent DNA ligase OB-fold domain CLI_RS16215 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CLI_RS16215 PF00533 BRCA1 C Terminus (BRCT) domain CLI_RS16215 PF12826 Helix-hairpin-helix motif CLI_RS16230 PF17868 AAA lid domain CLI_RS16230 PF07728 AAA domain (dynein-related subfamily) CLI_RS16230 PF12592 Protein of unknown function (DUF3763) CLI_RS16260 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS16265 PF13426 PAS domain CLI_RS16265 PF02954 Bacterial regulatory protein, Fis family CLI_RS16265 PF00158 Sigma-54 interaction domain CLI_RS16270 PF00766 Electron transfer flavoprotein FAD-binding domain CLI_RS16270 PF01012 Electron transfer flavoprotein domain CLI_RS16275 PF01012 Electron transfer flavoprotein domain CLI_RS16280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLI_RS16280 PF02770 Acyl-CoA dehydrogenase, middle domain CLI_RS16280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLI_RS16285 PF02803 Thiolase, C-terminal domain CLI_RS16285 PF00108 Thiolase, N-terminal domain CLI_RS16290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLI_RS16290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLI_RS16295 PF00378 Enoyl-CoA hydratase/isomerase CLI_RS16305 PF01541 GIY-YIG catalytic domain CLI_RS16305 PF02151 UvrB/uvrC motif CLI_RS16305 PF12826 Helix-hairpin-helix motif CLI_RS16305 PF08459 UvrC Helix-hairpin-helix N-terminal CLI_RS16310 PF00860 Permease family CLI_RS16315 PF01966 HD domain CLI_RS16330 PF01790 Prolipoprotein diacylglyceryl transferase CLI_RS16345 PF03009 Glycerophosphoryl diester phosphodiesterase family CLI_RS16350 PF02743 Cache domain CLI_RS16350 PF00672 HAMP domain CLI_RS16350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS16355 PF02915 Rubrerythrin CLI_RS16360 PF04055 Radical SAM superfamily CLI_RS16365 PF01228 Glycine radical CLI_RS16365 PF02901 Pyruvate formate lyase-like CLI_RS16375 PF14693 Ribosomal protein TL5, C-terminal domain CLI_RS16375 PF01386 Ribosomal L25p family CLI_RS16385 PF01475 Ferric uptake regulator family CLI_RS16400 PF13280 WYL domain CLI_RS16400 PF08279 HTH domain CLI_RS16425 PF01926 50S ribosome-binding GTPase CLI_RS16430 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS16430 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLI_RS16430 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI_RS16435 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI_RS16435 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS16440 PF06689 ClpX C4-type zinc finger CLI_RS16440 PF07724 AAA domain (Cdc48 subfamily) CLI_RS16440 PF10431 C-terminal, D2-small domain, of ClpB protein CLI_RS16445 PF00574 Clp protease CLI_RS16450 PF05697 Bacterial trigger factor protein (TF) CLI_RS16450 PF05698 Bacterial trigger factor protein (TF) C-terminus CLI_RS16450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI_RS16455 PF01261 Xylose isomerase-like TIM barrel CLI_RS16465 PF00156 Phosphoribosyl transferase domain CLI_RS16470 PF01180 Dihydroorotate dehydrogenase CLI_RS16475 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLI_RS16480 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLI_RS16485 PF01979 Amidohydrolase family CLI_RS16490 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CLI_RS16490 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CLI_RS16495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI_RS16495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI_RS16500 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS16510 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS16515 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS16525 PF00005 ABC transporter CLI_RS16535 PF00528 Binding-protein-dependent transport system inner membrane component CLI_RS16695 PF01725 Ham1 family CLI_RS16710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI_RS16715 PF02934 GatB/GatE catalytic domain CLI_RS16715 PF02637 GatB domain CLI_RS16720 PF01425 Amidase CLI_RS16725 PF02686 Glu-tRNAGln amidotransferase C subunit CLI_RS16740 PF00533 BRCA1 C Terminus (BRCT) domain CLI_RS16740 PF03120 NAD-dependent DNA ligase OB-fold domain CLI_RS16740 PF12826 Helix-hairpin-helix motif CLI_RS16740 PF01653 NAD-dependent DNA ligase adenylation domain CLI_RS16745 PF00580 UvrD/REP helicase N-terminal domain CLI_RS16745 PF13361 UvrD-like helicase C-terminal domain CLI_RS16750 PF01371 Trp repressor protein CLI_RS16755 PF00849 RNA pseudouridylate synthase CLI_RS16755 PF01479 S4 domain CLI_RS16760 PF01464 Transglycosylase SLT domain CLI_RS16775 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLI_RS16780 PF00342 Phosphoglucose isomerase CLI_RS16790 PF17934 Tetracyclin repressor-like, C-terminal domain CLI_RS16790 PF00440 Bacterial regulatory proteins, tetR family CLI_RS16800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI_RS16800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI_RS16805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI_RS16805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI_RS16815 PF01012 Electron transfer flavoprotein domain CLI_RS16815 PF00766 Electron transfer flavoprotein FAD-binding domain CLI_RS16815 PF13237 4Fe-4S dicluster domain CLI_RS16820 PF01012 Electron transfer flavoprotein domain CLI_RS16825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLI_RS16825 PF02770 Acyl-CoA dehydrogenase, middle domain CLI_RS16825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLI_RS16830 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS16835 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS16840 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS16845 PF02515 CoA-transferase family III CLI_RS16850 PF13193 AMP-binding enzyme C-terminal domain CLI_RS16850 PF00501 AMP-binding enzyme CLI_RS16855 PF05525 Branched-chain amino acid transport protein CLI_RS16860 PF00117 Glutamine amidotransferase class-I CLI_RS16860 PF00958 GMP synthase C terminal domain CLI_RS16860 PF02540 NAD synthase CLI_RS16865 PF00478 IMP dehydrogenase / GMP reductase domain CLI_RS16865 PF00571 CBS domain CLI_RS16870 PF01171 PP-loop family CLI_RS16875 PF00118 TCP-1/cpn60 chaperonin family CLI_RS16880 PF00166 Chaperonin 10 Kd subunit CLI_RS16890 PF09335 SNARE associated Golgi protein CLI_RS16905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS16905 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLI_RS16905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI_RS16910 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLI_RS16910 PF00175 Oxidoreductase NAD-binding domain CLI_RS16915 PF02629 CoA binding domain CLI_RS16915 PF06971 Putative DNA-binding protein N-terminus CLI_RS16920 PF16326 ABC transporter C-terminal domain CLI_RS16920 PF12848 ABC transporter CLI_RS16920 PF00005 ABC transporter CLI_RS16925 PF00072 Response regulator receiver domain CLI_RS16925 PF04397 LytTr DNA-binding domain CLI_RS16930 PF06580 Histidine kinase CLI_RS16930 PF07694 5TMR of 5TMR-LYT CLI_RS16935 PF02554 Carbon starvation protein CstA CLI_RS16940 PF08367 Peptidase M16C associated CLI_RS16940 PF05193 Peptidase M16 inactive domain CLI_RS16940 PF00675 Insulinase (Peptidase family M16) CLI_RS16945 PF02785 Biotin carboxylase C-terminal domain CLI_RS16945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLI_RS16945 PF02436 Conserved carboxylase domain CLI_RS16945 PF00364 Biotin-requiring enzyme CLI_RS16945 PF00289 Biotin carboxylase, N-terminal domain CLI_RS16945 PF00682 HMGL-like CLI_RS16950 PF00814 Glycoprotease family CLI_RS16960 PF04324 BFD-like [2Fe-2S] binding domain CLI_RS16960 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS16980 PF01297 Zinc-uptake complex component A periplasmic CLI_RS16985 PF01966 HD domain CLI_RS16990 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLI_RS16995 PF00814 Glycoprotease family CLI_RS17000 PF00583 Acetyltransferase (GNAT) family CLI_RS17005 PF00579 tRNA synthetases class I (W and Y) CLI_RS17005 PF01479 S4 domain CLI_RS17035 PF16658 Class II release factor RF3, C-terminal domain CLI_RS17035 PF03144 Elongation factor Tu domain 2 CLI_RS17035 PF00009 Elongation factor Tu GTP binding domain CLI_RS17045 PF00579 tRNA synthetases class I (W and Y) CLI_RS17055 PF01880 Desulfoferrodoxin CLI_RS17055 PF06397 Desulfoferrodoxin, N-terminal domain CLI_RS17065 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CLI_RS17065 PF06165 Glycosyltransferase family 36 CLI_RS17065 PF10091 Putative glucoamylase CLI_RS17070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLI_RS17070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLI_RS17075 PF00696 Amino acid kinase family CLI_RS17075 PF13840 ACT domain CLI_RS17080 PF02127 Aminopeptidase I zinc metalloprotease (M18) CLI_RS17085 PF01545 Cation efflux family CLI_RS17085 PF16916 Dimerisation domain of Zinc Transporter CLI_RS17095 PF13538 UvrD-like helicase C-terminal domain CLI_RS17100 PF06480 FtsH Extracellular CLI_RS17100 PF17862 AAA+ lid domain CLI_RS17100 PF01434 Peptidase family M41 CLI_RS17100 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS17105 PF01546 Peptidase family M20/M25/M40 CLI_RS17110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS17110 PF03129 Anticodon binding domain CLI_RS17110 PF09180 Prolyl-tRNA synthetase, C-terminal CLI_RS17115 PF01541 GIY-YIG catalytic domain CLI_RS17125 PF00005 ABC transporter CLI_RS17125 PF13732 Domain of unknown function (DUF4162) CLI_RS17135 PF04542 Sigma-70 region 2 CLI_RS17135 PF08281 Sigma-70, region 4 CLI_RS17140 PF01740 STAS domain CLI_RS17140 PF00916 Sulfate permease family CLI_RS17145 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS17150 PF00486 Transcriptional regulatory protein, C terminal CLI_RS17150 PF00072 Response regulator receiver domain CLI_RS17160 PF00005 ABC transporter CLI_RS17180 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI_RS17185 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLI_RS17190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI_RS17195 PF03610 PTS system fructose IIA component CLI_RS17195 PF00158 Sigma-54 interaction domain CLI_RS17195 PF00874 PRD domain CLI_RS17200 PF02378 Phosphotransferase system, EIIC CLI_RS17205 PF02056 Family 4 glycosyl hydrolase CLI_RS17205 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLI_RS17210 PF00990 Diguanylate cyclase, GGDEF domain CLI_RS17210 PF00563 EAL domain CLI_RS17210 PF00360 Phytochrome region CLI_RS17210 PF01590 GAF domain CLI_RS17215 PF00589 Phage integrase family CLI_RS17215 PF02899 Phage integrase, N-terminal SAM-like domain CLI_RS17220 PF02675 S-adenosylmethionine decarboxylase CLI_RS17235 PF01638 HxlR-like helix-turn-helix CLI_RS17250 PF00248 Aldo/keto reductase family CLI_RS17255 PF03358 NADPH-dependent FMN reductase CLI_RS17260 PF13411 MerR HTH family regulatory protein CLI_RS17275 PF02082 Transcriptional regulator CLI_RS17280 PF00583 Acetyltransferase (GNAT) family CLI_RS17285 PF05958 tRNA (Uracil-5-)-methyltransferase CLI_RS17285 PF01938 TRAM domain CLI_RS17300 PF00224 Pyruvate kinase, barrel domain CLI_RS17300 PF02887 Pyruvate kinase, alpha/beta domain CLI_RS17305 PF00365 Phosphofructokinase CLI_RS17310 PF14579 Helix-hairpin-helix motif CLI_RS17310 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLI_RS17310 PF01336 OB-fold nucleic acid binding domain CLI_RS17310 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLI_RS17310 PF02811 PHP domain CLI_RS17315 PF02650 WhiA C-terminal HTH domain CLI_RS17315 PF14527 WhiA LAGLIDADG-like domain CLI_RS17315 PF10298 WhiA N-terminal LAGLIDADG-like domain CLI_RS17320 PF01933 Uncharacterised protein family UPF0052 CLI_RS17325 PF03668 P-loop ATPase protein family CLI_RS17330 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLI_RS17330 PF01565 FAD binding domain CLI_RS17340 PF01541 GIY-YIG catalytic domain CLI_RS17340 PF08459 UvrC Helix-hairpin-helix N-terminal CLI_RS17340 PF02151 UvrB/uvrC motif CLI_RS17340 PF12826 Helix-hairpin-helix motif CLI_RS17345 PF04307 LexA-binding, inner membrane-associated putative hydrolase CLI_RS17355 PF00905 Penicillin binding protein transpeptidase domain CLI_RS17360 PF01098 Cell cycle protein CLI_RS17365 PF12401 Protein of unknown function (DUF2662) CLI_RS17365 PF00498 FHA domain CLI_RS17370 PF17760 UvrA interaction domain CLI_RS17370 PF17755 UvrA DNA-binding domain CLI_RS17375 PF12344 Ultra-violet resistance protein B CLI_RS17375 PF17757 UvrB interaction domain CLI_RS17375 PF04851 Type III restriction enzyme, res subunit CLI_RS17375 PF00271 Helicase conserved C-terminal domain CLI_RS17375 PF02151 UvrB/uvrC motif CLI_RS17380 PF17820 PDZ domain CLI_RS17380 PF02163 Peptidase family M50 CLI_RS17385 PF01471 Putative peptidoglycan binding domain CLI_RS17385 PF17820 PDZ domain CLI_RS17385 PF03572 Peptidase family S41 CLI_RS17390 PF18075 FtsX extracellular domain CLI_RS17390 PF02687 FtsX-like permease family CLI_RS17395 PF00005 ABC transporter CLI_RS17400 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLI_RS17400 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLI_RS17410 PF02780 Transketolase, C-terminal domain CLI_RS17410 PF02779 Transketolase, pyrimidine binding domain CLI_RS17415 PF00456 Transketolase, thiamine diphosphate binding domain CLI_RS17420 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLI_RS17430 PF00842 Alanine racemase, C-terminal domain CLI_RS17430 PF01168 Alanine racemase, N-terminal domain CLI_RS17440 PF03853 YjeF-related protein N-terminus CLI_RS17440 PF01256 Carbohydrate kinase CLI_RS17445 PF01648 4'-phosphopantetheinyl transferase superfamily CLI_RS17460 PF03631 Virulence factor BrkB CLI_RS17470 PF01479 S4 domain CLI_RS17470 PF00163 Ribosomal protein S4/S9 N-terminal domain CLI_RS17475 PF00375 Sodium:dicarboxylate symporter family CLI_RS17485 PF01380 SIS domain CLI_RS17490 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLI_RS17495 PF13419 Haloacid dehalogenase-like hydrolase CLI_RS17500 PF00106 short chain dehydrogenase CLI_RS17505 PF03829 PTS system glucitol/sorbitol-specific IIA component CLI_RS17510 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CLI_RS17510 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CLI_RS17515 PF03608 PTS system enzyme II sorbitol-specific factor CLI_RS17525 PF00107 Zinc-binding dehydrogenase CLI_RS17525 PF08240 Alcohol dehydrogenase GroES-like domain CLI_RS17530 PF13936 Helix-turn-helix domain CLI_RS17530 PF04198 Putative sugar-binding domain CLI_RS17535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI_RS17535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI_RS17535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLI_RS17535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI_RS17550 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLI_RS17550 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLI_RS17550 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLI_RS17565 PF00871 Acetokinase family CLI_RS17570 PF01515 Phosphate acetyl/butaryl transferase CLI_RS17575 PF00871 Acetokinase family CLI_RS17590 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLI_RS17595 PF07486 Cell Wall Hydrolase CLI_RS17600 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI_RS17605 PF00085 Thioredoxin CLI_RS17610 PF01979 Amidohydrolase family CLI_RS17625 PF02896 PEP-utilising enzyme, TIM barrel domain CLI_RS17625 PF00391 PEP-utilising enzyme, mobile domain CLI_RS17625 PF05524 PEP-utilising enzyme, N-terminal CLI_RS17630 PF02954 Bacterial regulatory protein, Fis family CLI_RS17630 PF00989 PAS fold CLI_RS17630 PF00158 Sigma-54 interaction domain CLI_RS17645 PF05683 Fumarase C-terminus CLI_RS17645 PF05681 Fumarate hydratase (Fumerase) CLI_RS17650 PF01520 N-acetylmuramoyl-L-alanine amidase CLI_RS17655 PF02690 Na+/Pi-cotransporter CLI_RS17660 PF00380 Ribosomal protein S9/S16 CLI_RS17665 PF00572 Ribosomal protein L13 CLI_RS17670 PF01416 tRNA pseudouridine synthase CLI_RS17675 PF02361 Cobalt transport protein CLI_RS17680 PF00005 ABC transporter CLI_RS17685 PF00005 ABC transporter CLI_RS17690 PF01196 Ribosomal protein L17 CLI_RS17695 PF01000 RNA polymerase Rpb3/RpoA insert domain CLI_RS17695 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLI_RS17695 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLI_RS17700 PF00163 Ribosomal protein S4/S9 N-terminal domain CLI_RS17700 PF01479 S4 domain CLI_RS17705 PF00411 Ribosomal protein S11 CLI_RS17710 PF00416 Ribosomal protein S13/S18 CLI_RS17715 PF00444 Ribosomal protein L36 CLI_RS17720 PF01176 Translation initiation factor 1A / IF-1 CLI_RS17730 PF00557 Metallopeptidase family M24 CLI_RS17735 PF05191 Adenylate kinase, active site lid CLI_RS17740 PF00344 SecY translocase CLI_RS17745 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLI_RS17750 PF00327 Ribosomal protein L30p/L7e CLI_RS17755 PF00333 Ribosomal protein S5, N-terminal domain CLI_RS17755 PF03719 Ribosomal protein S5, C-terminal domain CLI_RS17760 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLI_RS17765 PF00347 Ribosomal protein L6 CLI_RS17770 PF00410 Ribosomal protein S8 CLI_RS17775 PF00253 Ribosomal protein S14p/S29e CLI_RS17780 PF00281 Ribosomal protein L5 CLI_RS17780 PF00673 ribosomal L5P family C-terminus CLI_RS17785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLI_RS17785 PF00467 KOW motif CLI_RS17790 PF00238 Ribosomal protein L14p/L23e CLI_RS17795 PF00366 Ribosomal protein S17 CLI_RS17800 PF00831 Ribosomal L29 protein CLI_RS17805 PF00252 Ribosomal protein L16p/L10e CLI_RS17810 PF00189 Ribosomal protein S3, C-terminal domain CLI_RS17810 PF07650 KH domain CLI_RS17815 PF00237 Ribosomal protein L22p/L17e CLI_RS17820 PF00203 Ribosomal protein S19 CLI_RS17825 PF00181 Ribosomal Proteins L2, RNA binding domain CLI_RS17825 PF03947 Ribosomal Proteins L2, C-terminal domain CLI_RS17830 PF00276 Ribosomal protein L23 CLI_RS17835 PF00573 Ribosomal protein L4/L1 family CLI_RS17840 PF00297 Ribosomal protein L3 CLI_RS17845 PF00338 Ribosomal protein S10p/S20e CLI_RS17850 PF00009 Elongation factor Tu GTP binding domain CLI_RS17850 PF03144 Elongation factor Tu domain 2 CLI_RS17850 PF03143 Elongation factor Tu C-terminal domain CLI_RS17855 PF00679 Elongation factor G C-terminus CLI_RS17855 PF00009 Elongation factor Tu GTP binding domain CLI_RS17855 PF03144 Elongation factor Tu domain 2 CLI_RS17855 PF03764 Elongation factor G, domain IV CLI_RS17855 PF14492 Elongation Factor G, domain II CLI_RS17860 PF00177 Ribosomal protein S7p/S5e CLI_RS17865 PF00164 Ribosomal protein S12/S23 CLI_RS17870 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLI_RS17875 PF04997 RNA polymerase Rpb1, domain 1 CLI_RS17875 PF04983 RNA polymerase Rpb1, domain 3 CLI_RS17875 PF04998 RNA polymerase Rpb1, domain 5 CLI_RS17875 PF05000 RNA polymerase Rpb1, domain 4 CLI_RS17875 PF00623 RNA polymerase Rpb1, domain 2 CLI_RS17880 PF04563 RNA polymerase beta subunit CLI_RS17880 PF10385 RNA polymerase beta subunit external 1 domain CLI_RS17880 PF04565 RNA polymerase Rpb2, domain 3 CLI_RS17880 PF04561 RNA polymerase Rpb2, domain 2 CLI_RS17880 PF00562 RNA polymerase Rpb2, domain 6 CLI_RS17880 PF04560 RNA polymerase Rpb2, domain 7 CLI_RS17885 PF00542 Ribosomal protein L7/L12 C-terminal domain CLI_RS17885 PF16320 Ribosomal protein L7/L12 dimerisation domain CLI_RS17890 PF00466 Ribosomal protein L10 CLI_RS17895 PF00687 Ribosomal protein L1p/L10e family CLI_RS17900 PF00298 Ribosomal protein L11, RNA binding domain CLI_RS17900 PF03946 Ribosomal protein L11, N-terminal domain CLI_RS17905 PF02357 Transcription termination factor nusG CLI_RS17905 PF00467 KOW motif CLI_RS17915 PF00471 Ribosomal protein L33 CLI_RS17920 PF03144 Elongation factor Tu domain 2 CLI_RS17920 PF00009 Elongation factor Tu GTP binding domain CLI_RS17920 PF03143 Elongation factor Tu C-terminal domain CLI_RS17935 PF08281 Sigma-70, region 4 CLI_RS17935 PF04542 Sigma-70 region 2 CLI_RS17945 PF00588 SpoU rRNA Methylase family CLI_RS17945 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLI_RS17950 PF02511 Thymidylate synthase complementing protein CLI_RS17955 PF00636 Ribonuclease III domain CLI_RS17960 PF01406 tRNA synthetases class I (C) catalytic domain CLI_RS17960 PF09190 DALR domain CLI_RS17965 PF13291 ACT domain CLI_RS17965 PF00291 Pyridoxal-phosphate dependent enzyme CLI_RS17970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS17970 PF04073 Aminoacyl-tRNA editing domain CLI_RS17970 PF03129 Anticodon binding domain CLI_RS17975 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLI_RS17990 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLI_RS17990 PF10635 DisA bacterial checkpoint controller linker region CLI_RS17995 PF18073 Rubredoxin metal binding domain CLI_RS18000 PF02861 Clp amino terminal domain, pathogenicity island component CLI_RS18000 PF10431 C-terminal, D2-small domain, of ClpB protein CLI_RS18000 PF07724 AAA domain (Cdc48 subfamily) CLI_RS18000 PF17871 AAA lid domain CLI_RS18000 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS18005 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CLI_RS18010 PF02151 UvrB/uvrC motif CLI_RS18015 PF05848 CtsR N-terminal HTH domain CLI_RS18015 PF17727 CtsR C-terminal dimerization domain CLI_RS18025 PF14492 Elongation Factor G, domain II CLI_RS18025 PF03144 Elongation factor Tu domain 2 CLI_RS18025 PF00009 Elongation factor Tu GTP binding domain CLI_RS18025 PF00679 Elongation factor G C-terminus CLI_RS18025 PF03764 Elongation factor G, domain IV CLI_RS18085 PF08245 Mur ligase middle domain CLI_RS18095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI_RS18095 PF03129 Anticodon binding domain CLI_RS18100 PF00152 tRNA synthetases class II (D, K and N) CLI_RS18100 PF01336 OB-fold nucleic acid binding domain CLI_RS18105 PF01272 Transcription elongation factor, GreA/GreB, C-term CLI_RS18105 PF03449 Transcription elongation factor, N-terminal CLI_RS18115 PF01207 Dihydrouridine synthase (Dus) CLI_RS18120 PF03309 Type III pantothenate kinase CLI_RS18125 PF01268 Formate--tetrahydrofolate ligase CLI_RS18130 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS18130 PF01434 Peptidase family M41 CLI_RS18130 PF17862 AAA+ lid domain CLI_RS18135 PF00156 Phosphoribosyl transferase domain CLI_RS18140 PF11734 TilS substrate C-terminal domain CLI_RS18140 PF01171 PP-loop family CLI_RS18145 PF07228 Stage II sporulation protein E (SpoIIE) CLI_RS18185 PF00575 S1 RNA binding domain CLI_RS18205 PF01479 S4 domain CLI_RS18210 PF00216 Bacterial DNA-binding protein CLI_RS18215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI_RS18215 PF03819 MazG nucleotide pyrophosphohydrolase domain CLI_RS18220 PF01943 Polysaccharide biosynthesis protein CLI_RS18220 PF14667 Polysaccharide biosynthesis C-terminal domain CLI_RS18225 PF15714 Stage V sporulation protein T C-terminal, transcription factor CLI_RS18225 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLI_RS18230 PF13145 PPIC-type PPIASE domain CLI_RS18235 PF17757 UvrB interaction domain CLI_RS18235 PF02559 CarD-like/TRCF domain CLI_RS18235 PF03461 TRCF domain CLI_RS18235 PF00271 Helicase conserved C-terminal domain CLI_RS18235 PF00270 DEAD/DEAH box helicase CLI_RS18240 PF01195 Peptidyl-tRNA hydrolase CLI_RS18245 PF13180 PDZ domain CLI_RS18250 PF16736 Single Cache-like CLI_RS18250 PF00989 PAS fold CLI_RS18250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS18250 PF00512 His Kinase A (phospho-acceptor) domain CLI_RS18255 PF00486 Transcriptional regulatory protein, C terminal CLI_RS18255 PF00072 Response regulator receiver domain CLI_RS18260 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLI_RS18260 PF14572 Phosphoribosyl synthetase-associated domain CLI_RS18265 PF00132 Bacterial transferase hexapeptide (six repeats) CLI_RS18265 PF00483 Nucleotidyl transferase CLI_RS18270 PF04026 SpoVG CLI_RS18275 PF09182 Bacterial purine repressor, N-terminal CLI_RS18275 PF00156 Phosphoribosyl transferase domain CLI_RS18280 PF02875 Mur ligase family, glutamate ligase domain CLI_RS18280 PF08245 Mur ligase middle domain CLI_RS18280 PF01225 Mur ligase family, catalytic domain CLI_RS18310 PF04029 2-phosphosulpholactate phosphatase CLI_RS18315 PF04055 Radical SAM superfamily CLI_RS18315 PF16199 Radical_SAM C-terminal domain CLI_RS18335 PF02743 Cache domain CLI_RS18335 PF00672 HAMP domain CLI_RS18335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI_RS18350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLI_RS18355 PF01177 Asp/Glu/Hydantoin racemase CLI_RS18360 PF00120 Glutamine synthetase, catalytic domain CLI_RS18370 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLI_RS18375 PF00753 Metallo-beta-lactamase superfamily CLI_RS18385 PF07516 SecA Wing and Scaffold domain CLI_RS18385 PF01043 SecA preprotein cross-linking domain CLI_RS18385 PF07517 SecA DEAD-like domain CLI_RS18385 PF02810 SEC-C motif CLI_RS18390 PF02590 Predicted SPOUT methyltransferase CLI_RS18395 PF07690 Major Facilitator Superfamily CLI_RS18405 PF16859 Tetracyclin repressor-like, C-terminal domain CLI_RS18405 PF00440 Bacterial regulatory proteins, tetR family CLI_RS18410 PF12833 Helix-turn-helix domain CLI_RS18415 PF00557 Metallopeptidase family M24 CLI_RS18415 PF02810 SEC-C motif CLI_RS18425 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS18430 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS18435 PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CLI_RS18445 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLI_RS18450 PF13237 4Fe-4S dicluster domain CLI_RS18450 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI_RS18450 PF13375 RnfC Barrel sandwich hybrid domain CLI_RS18450 PF10531 SLBB domain CLI_RS18455 PF11230 Protein of unknown function (DUF3029) CLI_RS18460 PF04055 Radical SAM superfamily CLI_RS18470 PF06968 Biotin and Thiamin Synthesis associated domain CLI_RS18470 PF04055 Radical SAM superfamily CLI_RS18480 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLI_RS18480 PF01926 50S ribosome-binding GTPase CLI_RS18490 PF13439 Glycosyltransferase Family 4 CLI_RS18490 PF00534 Glycosyl transferases group 1 CLI_RS18495 PF02811 PHP domain CLI_RS18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI_RS18510 PF03466 LysR substrate binding domain CLI_RS18515 PF00082 Subtilase family CLI_RS18520 PF03466 LysR substrate binding domain CLI_RS18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI_RS18525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI_RS18530 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLI_RS18535 PF01039 Carboxyl transferase domain CLI_RS18535 PF17848 Acetyl-coA carboxylase zinc finger domain CLI_RS18540 PF00289 Biotin carboxylase, N-terminal domain CLI_RS18540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLI_RS18540 PF02785 Biotin carboxylase C-terminal domain CLI_RS18545 PF07977 FabA-like domain CLI_RS18550 PF00364 Biotin-requiring enzyme CLI_RS18555 PF02801 Beta-ketoacyl synthase, C-terminal domain CLI_RS18555 PF00109 Beta-ketoacyl synthase, N-terminal domain CLI_RS18565 PF00698 Acyl transferase domain CLI_RS18570 PF03060 Nitronate monooxygenase CLI_RS18575 PF00550 Phosphopantetheine attachment site CLI_RS18580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLI_RS18580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLI_RS18595 PF08525 Opacity-associated protein A N-terminal motif CLI_RS18595 PF01476 LysM domain CLI_RS18595 PF01551 Peptidase family M23 CLI_RS18605 PF01695 IstB-like ATP binding protein CLI_RS18665 PF03618 Kinase/pyrophosphorylase CLI_RS18690 PF00709 Adenylosuccinate synthetase CLI_RS18705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI_RS18705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI_RS18705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLI_RS18705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI_RS18710 PF03796 DnaB-like helicase C terminal domain CLI_RS18710 PF00772 DnaB-like helicase N terminal domain CLI_RS18715 PF00004 ATPase family associated with various cellular activities (AAA) CLI_RS18715 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI_RS18720 PF01281 Ribosomal protein L9, N-terminal domain CLI_RS18720 PF03948 Ribosomal protein L9, C-terminal domain CLI_RS18725 PF02272 DHHA1 domain CLI_RS18725 PF01368 DHH family CLI_RS18740 PF01084 Ribosomal protein S18 CLI_RS18745 PF00436 Single-strand binding protein family CLI_RS18750 PF01250 Ribosomal protein S6 CLI_RS18755 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLI_RS18765 PF00924 Mechanosensitive ion channel CLI_RS18775 PF00266 Aminotransferase class-V CLI_RS18780 PF01594 AI-2E family transporter CLI_RS18785 PF06866 Protein of unknown function (DUF1256) CLI_RS18800 PF02195 ParB-like nuclease domain CLI_RS18800 PF17762 HTH domain found in ParB protein CLI_RS18805 PF13614 AAA domain CLI_RS18810 PF17762 HTH domain found in ParB protein CLI_RS18810 PF02195 ParB-like nuclease domain CLI_RS18815 PF02527 rRNA small subunit methyltransferase G CLI_RS18820 PF01134 Glucose inhibited division protein A CLI_RS18820 PF13932 GidA associated domain CLI_RS18825 PF10396 GTP-binding protein TrmE N-terminus CLI_RS18825 PF01926 50S ribosome-binding GTPase CLI_RS18825 PF12631 MnmE helical domain CLI_RS18830 PF01424 R3H domain CLI_RS18830 PF14804 Jag N-terminus CLI_RS18835 PF02096 60Kd inner membrane protein CLI_RS18840 PF01809 Putative membrane protein insertion efficiency factor CLI_RS18845 PF00825 Ribonuclease P CLI_RS18850 PF00468 Ribosomal protein L34 CLI_RS18860 PF00308 Bacterial dnaA protein CLI_RS18860 PF08299 Bacterial dnaA protein helix-turn-helix CLI_RS18860 PF11638 DnaA N-terminal domain CLI_RS18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI_RS18890 PF00986 DNA gyrase B subunit, carboxyl terminus CLI_RS18890 PF00204 DNA gyrase B CLI_RS18890 PF01751 Toprim domain