locus-tag	class	description
CLI_RS00015	COG0592	DNA-directed DNA polymerase activity
CLI_RS00035	COG0187	DNA topoisomerase II activity
CLI_RS00040	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLI_RS00075	COG1827	regulation of RNA biosynthetic process
CLI_RS00080	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLI_RS00165	COG0626	cystathionine gamma-synthase activity
CLI_RS00180	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLI_RS00210	COG2816	NAD+ diphosphatase activity
CLI_RS00230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CLI_RS00240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI_RS00345	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLI_RS00375	COG1619	proteins homologs of microcin C7 resistance protein MccF
CLI_RS00400	COG1982	Orn Lys Arg decarboxylase major
CLI_RS00410	COG3870	Protein conserved in bacteria
CLI_RS00415	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLI_RS00420	COG1774	PSP1 C-terminal conserved region
CLI_RS00435	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CLI_RS00440	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLI_RS00445	COG0791	NLP P60 protein
CLI_RS00450	COG2002	toxin-antitoxin pair type II binding
CLI_RS00460	COG2235	arginine
CLI_RS00475	COG0726	polysaccharide deacetylase
CLI_RS00485	COG2715	membrane protein required for spore maturation
CLI_RS00490	COG0700	Nucleoside recognition
CLI_RS00495	COG0534	Mate efflux family protein
CLI_RS00500	COG1573	uracil-dna glycosylase
CLI_RS00510	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI_RS00510	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI_RS00515	COG4399	Belongs to the UPF0754 family
CLI_RS00520	COG0084	hydrolase, TatD family'
CLI_RS00525	COG3584	3D domain protein
CLI_RS00525	COG3583	domain protein
CLI_RS00560	COG1136	(ABC) transporter
CLI_RS00565	COG0577	efflux transmembrane transporter activity
CLI_RS00575	COG1141	Ferredoxin
CLI_RS00590	COG3706	GGDEF domain
CLI_RS00595	COG1285	pathogenesis
CLI_RS00600	COG1328	CTP reductase activity
CLI_RS00625	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CLI_RS00630	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CLI_RS00640	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
CLI_RS00645	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CLI_RS00645	COG0662	Cupin 2, conserved barrel domain protein
CLI_RS00650	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
CLI_RS00655	COG1606	tRNA processing
CLI_RS00660	COG1691	(AIR) carboxylase
CLI_RS00670	COG1653	transport
CLI_RS00680	COG3642	lipopolysaccharide core region biosynthetic process
CLI_RS00715	COG4466	Protein conserved in bacteria
CLI_RS00730	COG4242	Belongs to the peptidase S51 family
CLI_RS00735	COG0189	ligase activity
CLI_RS00735	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CLI_RS00755	COG0697	spore germination
CLI_RS00760	COG0814	amino acid
CLI_RS00775	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CLI_RS00780	COG2959	enzyme of heme biosynthesis
CLI_RS00800	COG0504	CTP synthase activity
CLI_RS00810	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CLI_RS00825	COG3872	metal-dependent enzyme
CLI_RS00850	COG0009	L-threonylcarbamoyladenylate synthase
CLI_RS00855	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLI_RS00860	COG0698	ribose 5-phosphate isomerase
CLI_RS00875	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLI_RS00880	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CLI_RS00890	COG0356	it plays a direct role in the translocation of protons across the membrane
CLI_RS00940	COG2385	sporulation resulting in formation of a cellular spore
CLI_RS00950	COG1609	Transcriptional regulator
CLI_RS00965	COG0037	tRNA processing
CLI_RS01000	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CLI_RS01040	COG2183	response to ionizing radiation
CLI_RS01045	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CLI_RS01070	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLI_RS01080	COG2357	RelA SpoT domain protein
CLI_RS01095	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLI_RS01130	COG0191	fructose-bisphosphate aldolase activity
CLI_RS01140	COG2323	membrane
CLI_RS01145	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLI_RS01155	COG1183	phosphatidylcholine synthase activity
CLI_RS01160	COG0517	IMP dehydrogenase activity
CLI_RS01165	COG1597	lipid kinase activity
CLI_RS01190	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLI_RS01195	COG1045	serine acetyltransferase
CLI_RS01200	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CLI_RS01210	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLI_RS01215	COG0281	malic enzyme
CLI_RS01225	COG1073	alpha beta
CLI_RS01230	COG1363	Peptidase, m42
CLI_RS01235	COG2720	vancomycin resistance protein
CLI_RS01240	COG2720	vancomycin resistance protein
CLI_RS01245	COG1533	DNA photolyase activity
CLI_RS01250	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CLI_RS01255	COG1307	EDD domain protein, DegV family
CLI_RS01260	COG1744	ABC transporter substrate-binding protein PnrA-like
CLI_RS01265	COG3845	ABC transporter
CLI_RS01270	COG4603	Belongs to the binding-protein-dependent transport system permease family
CLI_RS01275	COG1079	Belongs to the binding-protein-dependent transport system permease family
CLI_RS01285	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CLI_RS01295	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CLI_RS01325	COG0557	exoribonuclease II activity
CLI_RS01355	COG0277	FAD linked oxidase domain protein
CLI_RS01360	COG2226	methyltransferase
CLI_RS01385	COG0076	glutamate decarboxylase activity
CLI_RS01390	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLI_RS01400	COG0662	Cupin 2, conserved barrel domain protein
CLI_RS01410	COG2205	protein histidine kinase activity
CLI_RS01415	COG1136	(ABC) transporter
CLI_RS01425	COG0596	Alpha beta hydrolase
CLI_RS01440	COG0281	malic enzyme
CLI_RS01450	COG3290	protein histidine kinase activity
CLI_RS01455	COG4565	transcriptional regulatory protein
CLI_RS01460	COG0833	amino acid
CLI_RS01490	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLI_RS01495	COG2176	DNA-directed DNA polymerase activity
CLI_RS01505	COG1335	isochorismatase
CLI_RS01510	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CLI_RS01530	COG0785	Cytochrome C biogenesis protein
CLI_RS01535	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI_RS01545	COG2205	protein histidine kinase activity
CLI_RS01550	COG0277	FAD linked oxidase domain protein
CLI_RS01555	COG1486	melibiose metabolic process
CLI_RS01560	COG1263	PTS System
CLI_RS01560	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS01575	COG2190	(PTS) system
CLI_RS01580	COG0745	RESPONSE REGULATOR receiver
CLI_RS01585	COG5002	protein histidine kinase activity
CLI_RS01590	COG1136	(ABC) transporter
CLI_RS01595	COG0577	efflux transmembrane transporter activity
CLI_RS01605	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS01605	COG1263	PTS System
CLI_RS01610	COG1486	melibiose metabolic process
CLI_RS01615	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS01615	COG1263	PTS System
CLI_RS01615	COG2190	(PTS) system
CLI_RS01630	COG1278	Cold shock
CLI_RS01640	COG1959	2 iron, 2 sulfur cluster binding
CLI_RS01645	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CLI_RS01650	COG2910	NAD(P)H-binding
CLI_RS01655	COG1737	Transcriptional regulator
CLI_RS01660	COG1263	PTS System
CLI_RS01660	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS01670	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS01670	COG1263	PTS System
CLI_RS01670	COG2190	(PTS) system
CLI_RS01675	COG0129	dihydroxy-acid dehydratase activity
CLI_RS01695	COG0745	RESPONSE REGULATOR receiver
CLI_RS01700	COG2770	Histidine kinase
CLI_RS01700	COG2205	protein histidine kinase activity
CLI_RS01705	COG0463	Glycosyl transferase, family 2
CLI_RS01710	COG2246	polysaccharide biosynthetic process
CLI_RS01715	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CLI_RS01730	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS01735	COG1120	ATPase activity
CLI_RS01750	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI_RS01755	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI_RS01760	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS01765	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS01770	COG1120	ATPase activity
CLI_RS01775	COG1132	(ABC) transporter
CLI_RS01790	COG0745	RESPONSE REGULATOR receiver
CLI_RS01795	COG2205	protein histidine kinase activity
CLI_RS01800	COG1968	undecaprenyl-diphosphatase activity
CLI_RS01805	COG1136	(ABC) transporter
CLI_RS01810	COG0577	efflux transmembrane transporter activity
CLI_RS01830	COG1346	cytolysis
CLI_RS01870	COG2203	Gaf domain
CLI_RS01870	COG5001	Diguanylate cyclase
CLI_RS01870	COG3706	GGDEF domain
CLI_RS01870	COG4251	negative regulation of phosphorylation
CLI_RS01885	COG5002	protein histidine kinase activity
CLI_RS01905	COG5002	protein histidine kinase activity
CLI_RS01910	COG0037	tRNA processing
CLI_RS01915	COG3800	Transcriptional regulator
CLI_RS01915	COG1396	sequence-specific DNA binding
CLI_RS01920	COG0531	amino acid
CLI_RS01925	COG0006	proline dipeptidase activity
CLI_RS01955	COG0671	phosphoesterase, PA-phosphatase related
CLI_RS01965	COG0745	RESPONSE REGULATOR receiver
CLI_RS01970	COG3850	Histidine kinase
CLI_RS01970	COG5002	protein histidine kinase activity
CLI_RS01980	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CLI_RS01985	COG0398	Pfam SNARE associated Golgi protein
CLI_RS02015	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLI_RS02035	COG5002	protein histidine kinase activity
CLI_RS02040	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLI_RS02045	COG4656	Part of a membrane complex involved in electron transport
CLI_RS02050	COG4658	electron transport chain
CLI_RS02055	COG4659	FMN binding
CLI_RS02060	COG4660	Part of a membrane complex involved in electron transport
CLI_RS02065	COG4657	Part of a membrane complex involved in electron transport
CLI_RS02070	COG1245	4Fe-4S binding domain
CLI_RS02070	COG2878	Part of a membrane complex involved in electron transport
CLI_RS02090	COG1477	protein flavinylation
CLI_RS02095	COG0544	peptidyl-prolyl cis-trans isomerase activity
CLI_RS02135	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CLI_RS02140	COG0573	inorganic phosphate transmembrane transporter activity
CLI_RS02150	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLI_RS02160	COG0531	amino acid
CLI_RS02180	COG0629	single-stranded DNA binding
CLI_RS02205	COG0457	Tetratricopeptide repeat
CLI_RS02205	COG0705	Rhomboid family
CLI_RS02215	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLI_RS02265	COG3442	glutamine amidotransferase
CLI_RS02270	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CLI_RS02275	COG1482	cell wall glycoprotein biosynthetic process
CLI_RS02285	COG1968	undecaprenyl-diphosphatase activity
CLI_RS02320	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CLI_RS02330	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CLI_RS02335	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CLI_RS02340	COG0473	3-isopropylmalate dehydrogenase activity
CLI_RS02345	COG1126	abc transporter atp-binding protein
CLI_RS02350	COG1757	Na H antiporter
CLI_RS02355	COG2155	Conserved Protein
CLI_RS02415	COG0375	protein maturation
CLI_RS02440	COG0840	transmembrane signaling receptor activity
CLI_RS02440	COG3290	protein histidine kinase activity
CLI_RS02450	COG1752	Esterase of the alpha-beta hydrolase superfamily
CLI_RS02475	COG0765	amino acid transport
CLI_RS02480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI_RS02485	COG2226	methyltransferase
CLI_RS02490	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CLI_RS02505	COG0351	phosphomethylpyrimidine kinase
CLI_RS02560	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS02570	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CLI_RS02590	COG2226	methyltransferase
CLI_RS02595	COG3655	Transcriptional regulator
CLI_RS02605	COG0420	3'-5' exonuclease activity
CLI_RS02610	COG0419	ATPase involved in DNA repair
CLI_RS02620	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI_RS02625	COG0640	Transcriptional regulator
CLI_RS02630	COG2217	Heavy metal translocating P-type atpase
CLI_RS02640	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CLI_RS02645	COG5434	Belongs to the glycosyl hydrolase 28 family
CLI_RS02645	COG4632	Exopolysaccharide biosynthesis protein
CLI_RS02685	COG1131	(ABC) transporter
CLI_RS02700	COG1994	Peptidase M50
CLI_RS02730	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CLI_RS02735	COG1028	Short-chain dehydrogenase reductase Sdr
CLI_RS02740	COG2205	protein histidine kinase activity
CLI_RS02740	COG0784	Response regulator, receiver
CLI_RS02750	COG2267	carboxylic ester hydrolase activity
CLI_RS02755	COG0745	RESPONSE REGULATOR receiver
CLI_RS02765	COG0840	transmembrane signaling receptor activity
CLI_RS02770	COG2204	response regulator
CLI_RS02775	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CLI_RS02780	COG1199	ATP-dependent helicase activity
CLI_RS02810	COG2703	oxygen carrier activity
CLI_RS02840	COG0531	amino acid
CLI_RS02850	COG1522	sequence-specific DNA binding
CLI_RS02860	COG0531	amino acid
CLI_RS02865	COG0531	amino acid
CLI_RS02875	COG0658	competence protein
CLI_RS02875	COG2333	competence protein COMEC
CLI_RS02885	COG2059	Chromate
CLI_RS02890	COG2059	Chromate
CLI_RS02895	COG2337	Toxic component of a toxin-antitoxin (TA) module
CLI_RS02905	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CLI_RS02905	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLI_RS02925	COG0006	proline dipeptidase activity
CLI_RS02965	COG1073	alpha beta
CLI_RS02975	COG1966	Carbon starvation protein
CLI_RS02990	COG0488	(ABC) transporter
CLI_RS02995	COG1970	mechanosensitive ion channel activity
CLI_RS03010	COG0653	protein targeting
CLI_RS03015	COG1725	Transcriptional regulator
CLI_RS03020	COG1131	(ABC) transporter
CLI_RS03030	COG3842	ATPase activity
CLI_RS03040	COG1177	transmembrane transport
CLI_RS03050	COG1301	dicarboxylic acid transport
CLI_RS03060	COG0454	-acetyltransferase
CLI_RS03070	COG1357	PFAM Pentapeptide repeats (8 copies)
CLI_RS03075	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI_RS03075	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI_RS03105	COG3279	Response regulator of the LytR AlgR family
CLI_RS03145	COG1132	(ABC) transporter
CLI_RS03165	COG1136	(ABC) transporter
CLI_RS03185	COG1307	EDD domain protein, DegV family
CLI_RS03200	COG1368	sulfuric ester hydrolase activity
CLI_RS03210	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLI_RS03240	COG3708	Transcriptional regulator
CLI_RS03240	COG2207	Transcriptional regulator
CLI_RS03265	COG0745	RESPONSE REGULATOR receiver
CLI_RS03270	COG2205	protein histidine kinase activity
CLI_RS03275	COG1876	peptidase activity
CLI_RS03285	COG5002	protein histidine kinase activity
CLI_RS03295	COG0784	Response regulator, receiver
CLI_RS03300	COG5002	protein histidine kinase activity
CLI_RS03305	COG0772	Belongs to the SEDS family
CLI_RS03310	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CLI_RS03320	COG1132	(ABC) transporter
CLI_RS03340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLI_RS03345	COG2207	Transcriptional regulator
CLI_RS03350	COG1396	sequence-specific DNA binding
CLI_RS03380	COG1193	negative regulation of DNA recombination
CLI_RS03400	COG2832	Protein of unknown function (DUF454)
CLI_RS03420	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS03430	COG0513	Belongs to the DEAD box helicase family
CLI_RS03445	COG2814	Major facilitator Superfamily
CLI_RS03480	COG0583	DNA-binding transcription factor activity
CLI_RS03490	COG3711	transcriptional antiterminator
CLI_RS03495	COG1263	PTS System
CLI_RS03495	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS03495	COG2190	(PTS) system
CLI_RS03500	COG0613	PHP domain protein
CLI_RS03505	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLI_RS03515	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
CLI_RS03525	COG0519	Catalyzes the synthesis of GMP from XMP
CLI_RS03550	COG4120	Belongs to the binding-protein-dependent transport system permease family
CLI_RS03590	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLI_RS03615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS03620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS03625	COG1120	ATPase activity
CLI_RS03635	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
CLI_RS03645	COG0840	transmembrane signaling receptor activity
CLI_RS03670	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CLI_RS03675	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CLI_RS03680	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLI_RS03685	COG0095	Lipoate-protein ligase
CLI_RS03740	COG0745	RESPONSE REGULATOR receiver
CLI_RS03745	COG5002	protein histidine kinase activity
CLI_RS03750	COG0577	efflux transmembrane transporter activity
CLI_RS03750	COG1136	(ABC) transporter
CLI_RS03755	COG0577	efflux transmembrane transporter activity
CLI_RS03760	COG1846	Transcriptional regulator
CLI_RS03775	COG0789	Transcriptional regulator
CLI_RS03790	COG1979	alcohol dehydrogenase
CLI_RS03795	COG4716	Myosin-crossreactive antigen
CLI_RS03815	COG0656	L-ascorbic acid biosynthetic process
CLI_RS03830	COG0697	spore germination
CLI_RS03860	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLI_RS03865	COG0840	transmembrane signaling receptor activity
CLI_RS03880	COG0488	(ABC) transporter
CLI_RS03885	COG2378	regulation of single-species biofilm formation
CLI_RS03900	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLI_RS03905	COG1854	S-ribosylhomocysteine lyase activity
CLI_RS03910	COG0626	cystathionine gamma-synthase activity
CLI_RS03915	COG2226	methyltransferase
CLI_RS03955	COG1396	sequence-specific DNA binding
CLI_RS04020	COG0798	PFAM Bile acid sodium symporter
CLI_RS04115	COG0352	thiamine-phosphate diphosphorylase activity
CLI_RS04115	COG0351	phosphomethylpyrimidine kinase
CLI_RS04130	COG1131	(ABC) transporter
CLI_RS04140	COG0745	RESPONSE REGULATOR receiver
CLI_RS04155	COG2207	Transcriptional regulator
CLI_RS04155	COG3708	Transcriptional regulator
CLI_RS04175	COG1136	(ABC) transporter
CLI_RS04175	COG0577	efflux transmembrane transporter activity
CLI_RS04195	COG3850	Histidine kinase
CLI_RS04195	COG5002	protein histidine kinase activity
CLI_RS04215	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CLI_RS04260	COG0346	lactoylglutathione lyase activity
CLI_RS04275	COG0346	lactoylglutathione lyase activity
CLI_RS04295	COG1114	Component of the transport system for branched-chain amino acids
CLI_RS04300	COG1114	Component of the transport system for branched-chain amino acids
CLI_RS04305	COG0840	transmembrane signaling receptor activity
CLI_RS04315	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CLI_RS04320	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CLI_RS04325	COG0406	alpha-ribazole phosphatase activity
CLI_RS04330	COG2720	vancomycin resistance protein
CLI_RS04370	COG0720	synthase
CLI_RS04375	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CLI_RS04385	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLI_RS04385	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CLI_RS04390	COG0071	Belongs to the small heat shock protein (HSP20) family
CLI_RS04395	COG0789	Transcriptional regulator
CLI_RS04400	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLI_RS04415	COG1595	DNA-templated transcription, initiation
CLI_RS04430	COG2267	carboxylic ester hydrolase activity
CLI_RS04440	COG1683	Conserved Protein
CLI_RS04450	COG1522	sequence-specific DNA binding
CLI_RS04465	COG1131	(ABC) transporter
CLI_RS04505	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLI_RS04505	COG0456	acetyltransferase
CLI_RS04515	COG1741	Belongs to the pirin family
CLI_RS04520	COG1733	regulation of RNA biosynthetic process
CLI_RS04525	COG0778	Nitroreductase
CLI_RS04535	COG2140	Oxalate decarboxylase
CLI_RS04540	COG1611	Belongs to the LOG family
CLI_RS04550	COG0583	DNA-binding transcription factor activity
CLI_RS04560	COG1011	Hydrolase
CLI_RS04585	COG2378	regulation of single-species biofilm formation
CLI_RS04610	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS04615	COG2207	Transcriptional regulator
CLI_RS04615	COG3708	Transcriptional regulator
CLI_RS04620	COG0778	Nitroreductase
CLI_RS04630	COG3711	transcriptional antiterminator
CLI_RS04635	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS04635	COG1263	PTS System
CLI_RS04635	COG2190	(PTS) system
CLI_RS04640	COG2723	6-phospho-beta-galactosidase activity
CLI_RS04665	COG5002	protein histidine kinase activity
CLI_RS04670	COG1136	(ABC) transporter
CLI_RS04675	COG0577	efflux transmembrane transporter activity
CLI_RS04675	COG1136	(ABC) transporter
CLI_RS04685	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CLI_RS04695	COG0789	Transcriptional regulator
CLI_RS04715	COG3708	Transcriptional regulator
CLI_RS04715	COG2207	Transcriptional regulator
CLI_RS04725	COG4978	Transcriptional regulator
CLI_RS04725	COG0789	Transcriptional regulator
CLI_RS04740	COG1376	ErfK ybiS ycfS ynhG family protein
CLI_RS04775	COG1136	(ABC) transporter
CLI_RS04775	COG0577	efflux transmembrane transporter activity
CLI_RS04785	COG5002	protein histidine kinase activity
CLI_RS04790	COG1268	BioY protein
CLI_RS04800	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI_RS04805	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLI_RS04815	COG0789	Transcriptional regulator
CLI_RS04835	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CLI_RS04840	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CLI_RS04880	COG0113	porphobilinogen synthase activity
CLI_RS04905	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLI_RS04920	COG0454	-acetyltransferase
CLI_RS04930	COG0778	Nitroreductase
CLI_RS04940	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLI_RS05045	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
CLI_RS05055	COG2116	formate transmembrane transporter activity
CLI_RS05100	COG0745	RESPONSE REGULATOR receiver
CLI_RS05105	COG2205	protein histidine kinase activity
CLI_RS05110	COG1120	ATPase activity
CLI_RS05115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS05125	COG2376	Dihydroxyacetone kinase
CLI_RS05135	COG0662	Cupin 2, conserved barrel domain protein
CLI_RS05135	COG2207	Transcriptional regulator
CLI_RS05140	COG0454	-acetyltransferase
CLI_RS05160	COG0656	L-ascorbic acid biosynthetic process
CLI_RS05205	COG0514	ATP-dependent DNA helicase (RecQ)
CLI_RS05210	COG1773	rubredoxin
CLI_RS05210	COG1592	Rubrerythrin
CLI_RS05215	COG0622	Phosphoesterase
CLI_RS05220	COG0745	RESPONSE REGULATOR receiver
CLI_RS05240	COG0602	queuosine metabolic process
CLI_RS05255	COG1620	l-lactate permease
CLI_RS05260	COG3875	lactate racemase activity
CLI_RS05265	COG2086	electron transfer activity
CLI_RS05270	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLI_RS05275	COG0277	FAD linked oxidase domain protein
CLI_RS05300	COG0436	Aminotransferase
CLI_RS05310	COG1846	Transcriptional regulator
CLI_RS05315	COG4978	Transcriptional regulator
CLI_RS05315	COG0789	Transcriptional regulator
CLI_RS05325	COG0017	Asparaginyl-tRNA synthetase
CLI_RS05330	COG1132	(ABC) transporter
CLI_RS05360	COG1011	Hydrolase
CLI_RS05375	COG0583	DNA-binding transcription factor activity
CLI_RS05380	COG1595	DNA-templated transcription, initiation
CLI_RS05390	COG0456	acetyltransferase
CLI_RS05400	COG1918	ferrous iron import across plasma membrane
CLI_RS05400	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CLI_RS05415	COG2323	membrane
CLI_RS05425	COG1876	peptidase activity
CLI_RS05440	COG0006	proline dipeptidase activity
CLI_RS05450	COG5002	protein histidine kinase activity
CLI_RS05460	COG2124	cytochrome p450
CLI_RS05480	COG0745	RESPONSE REGULATOR receiver
CLI_RS05485	COG5002	protein histidine kinase activity
CLI_RS05500	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS05505	COG4605	iron ion homeostasis
CLI_RS05510	COG4604	ABC transporter, ATP-binding protein
CLI_RS05515	COG4607	ABC-type enterochelin transport system periplasmic component
CLI_RS05520	COG2207	Transcriptional regulator
CLI_RS05525	COG1132	(ABC) transporter
CLI_RS05530	COG1132	(ABC) transporter
CLI_RS05540	COG3279	Response regulator of the LytR AlgR family
CLI_RS05565	COG1331	Highly conserved protein containing a thioredoxin domain
CLI_RS05570	COG4129	membrane
CLI_RS05590	COG0488	(ABC) transporter
CLI_RS05615	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLI_RS05625	COG2271	Major facilitator Superfamily
CLI_RS05640	COG0436	Aminotransferase
CLI_RS05645	COG2239	Acts as a magnesium transporter
CLI_RS05675	COG3979	chitinase
CLI_RS05685	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLI_RS05690	COG2011	ABC-type metal ion transport system permease component
CLI_RS05695	COG1464	Belongs to the NlpA lipoprotein family
CLI_RS05700	COG1464	Belongs to the NlpA lipoprotein family
CLI_RS05705	COG1473	amidohydrolase
CLI_RS05725	COG2186	Transcriptional regulator
CLI_RS05730	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI_RS05750	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CLI_RS05760	COG0617	tRNA 3'-terminal CCA addition
CLI_RS05765	COG1012	belongs to the aldehyde dehydrogenase family
CLI_RS05770	COG1115	amino acid carrier protein
CLI_RS05775	COG1115	amino acid carrier protein
CLI_RS05780	COG1846	Transcriptional regulator
CLI_RS05785	COG0534	Mate efflux family protein
CLI_RS05800	COG4134	Bacterial extracellular solute-binding protein
CLI_RS05810	COG1176	ABC-type spermidine putrescine transport system, permease component I
CLI_RS05825	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLI_RS05840	COG2431	L-lysine efflux transmembrane transporter activity
CLI_RS05845	COG0110	maltose O-acetyltransferase activity
CLI_RS05865	COG5002	protein histidine kinase activity
CLI_RS05880	COG2239	Acts as a magnesium transporter
CLI_RS05890	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLI_RS05910	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLI_RS05925	COG1335	isochorismatase
CLI_RS05960	COG2897	thiosulfate sulfurtransferase activity
CLI_RS05970	COG0628	permease
CLI_RS06005	COG3842	ATPase activity
CLI_RS06020	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CLI_RS06020	COG0539	negative regulation of cytoplasmic translation
CLI_RS06025	COG0824	Thioesterase
CLI_RS06040	COG4120	Belongs to the binding-protein-dependent transport system permease family
CLI_RS06045	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLI_RS06060	COG0697	spore germination
CLI_RS06065	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLI_RS06075	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLI_RS06080	COG3404	Formiminotransferase-cyclodeaminase
CLI_RS06090	COG0561	phosphatase activity
CLI_RS06115	COG1959	2 iron, 2 sulfur cluster binding
CLI_RS06140	COG1606	tRNA processing
CLI_RS06165	COG3290	protein histidine kinase activity
CLI_RS06180	COG0584	glycerophosphoryl diester phosphodiesterase
CLI_RS06210	COG1231	oxidoreductase activity
CLI_RS06215	COG1917	Cupin 2, conserved barrel domain protein
CLI_RS06215	COG2207	Transcriptional regulator
CLI_RS06230	COG1940	carbohydrate kinase activity
CLI_RS06245	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLI_RS06255	COG1131	(ABC) transporter
CLI_RS06285	COG3858	chitin binding
CLI_RS06285	COG1388	LysM domain
CLI_RS06290	COG5001	Diguanylate cyclase
CLI_RS06290	COG3300	MHYT domain
CLI_RS06300	COG1760	l-serine dehydratase
CLI_RS06315	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
CLI_RS06335	COG1136	(ABC) transporter
CLI_RS06335	COG0577	efflux transmembrane transporter activity
CLI_RS06345	COG1136	(ABC) transporter
CLI_RS06350	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI_RS06355	COG0601	transmembrane transport
CLI_RS06375	COG3546	catalase activity
CLI_RS06380	COG4632	Exopolysaccharide biosynthesis protein
CLI_RS06380	COG5434	Belongs to the glycosyl hydrolase 28 family
CLI_RS06400	COG0756	dUTP diphosphatase activity
CLI_RS06435	COG1309	transcriptional regulator
CLI_RS06445	COG1131	(ABC) transporter
CLI_RS06465	COG1115	amino acid carrier protein
CLI_RS06475	COG1395	domain, Protein
CLI_RS06500	COG1012	belongs to the aldehyde dehydrogenase family
CLI_RS06520	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS06525	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS06570	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
CLI_RS06585	COG0235	Class ii aldolase
CLI_RS06595	COG1349	DNA-binding transcription factor activity
CLI_RS06605	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLI_RS06610	COG2323	membrane
CLI_RS06660	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CLI_RS06665	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CLI_RS06670	COG2080	2 iron, 2 sulfur cluster binding
CLI_RS06675	COG0590	tRNA wobble adenosine to inosine editing
CLI_RS06705	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLI_RS06710	COG1115	amino acid carrier protein
CLI_RS06720	COG5298	Protein conserved in bacteria
CLI_RS06725	COG1215	transferase activity, transferring glycosyl groups
CLI_RS06750	COG1937	Protein conserved in bacteria
CLI_RS06755	COG2217	Heavy metal translocating P-type atpase
CLI_RS06760	COG2608	mercury ion transmembrane transporter activity
CLI_RS06765	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLI_RS06770	COG1132	(ABC) transporter
CLI_RS06790	COG5002	protein histidine kinase activity
CLI_RS06795	COG1136	(ABC) transporter
CLI_RS06795	COG0577	efflux transmembrane transporter activity
CLI_RS06855	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CLI_RS06865	COG0569	domain protein
CLI_RS06870	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CLI_RS06905	COG2247	cell wall binding repeat
CLI_RS06905	COG2385	sporulation resulting in formation of a cellular spore
CLI_RS06910	COG1263	PTS System
CLI_RS06910	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS06910	COG2190	(PTS) system
CLI_RS06915	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CLI_RS06930	COG1151	hydroxylamine reductase activity
CLI_RS06940	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CLI_RS06945	COG0745	RESPONSE REGULATOR receiver
CLI_RS06955	COG0577	efflux transmembrane transporter activity
CLI_RS06960	COG1136	(ABC) transporter
CLI_RS06975	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLI_RS06985	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI_RS06990	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS06995	COG1120	ATPase activity
CLI_RS07005	COG4231	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
CLI_RS07010	COG1737	Transcriptional regulator
CLI_RS07020	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS07020	COG1263	PTS System
CLI_RS07065	COG0840	transmembrane signaling receptor activity
CLI_RS07065	COG5278	phosphoserine phosphatase activity
CLI_RS07075	COG0601	transmembrane transport
CLI_RS07080	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI_RS07085	COG0444	Belongs to the ABC transporter superfamily
CLI_RS07090	COG4608	Belongs to the ABC transporter superfamily
CLI_RS07100	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLI_RS07105	COG1121	(ABC) transporter
CLI_RS07110	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLI_RS07125	COG3706	GGDEF domain
CLI_RS07140	COG1116	anion transmembrane transporter activity
CLI_RS07145	COG0735	belongs to the Fur family
CLI_RS07165	COG1234	tRNA 3'-trailer cleavage
CLI_RS07170	COG0531	amino acid
CLI_RS07180	COG4585	Histidine kinase
CLI_RS07185	COG2197	response regulator
CLI_RS07190	COG1131	(ABC) transporter
CLI_RS07220	COG1278	Cold shock
CLI_RS07225	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLI_RS07235	COG0351	phosphomethylpyrimidine kinase
CLI_RS07240	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CLI_RS07245	COG1136	(ABC) transporter
CLI_RS07250	COG0577	efflux transmembrane transporter activity
CLI_RS07260	COG0745	RESPONSE REGULATOR receiver
CLI_RS07265	COG2205	protein histidine kinase activity
CLI_RS07270	COG1136	(ABC) transporter
CLI_RS07275	COG0577	efflux transmembrane transporter activity
CLI_RS07290	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CLI_RS07305	COG1126	abc transporter atp-binding protein
CLI_RS07315	COG1686	Belongs to the peptidase S11 family
CLI_RS07320	COG0494	nUDIX hydrolase
CLI_RS07330	COG1979	alcohol dehydrogenase
CLI_RS07340	COG1288	antiporter activity
CLI_RS07345	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLI_RS07350	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI_RS07355	COG0765	amino acid transport
CLI_RS07375	COG0849	cell division
CLI_RS07380	COG1473	amidohydrolase
CLI_RS07385	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI_RS07390	COG0564	pseudouridine synthase activity
CLI_RS07395	COG2244	polysaccharide biosynthetic process
CLI_RS07420	COG1067	ATP-dependent peptidase activity
CLI_RS07445	COG3227	Zinc metalloprotease (Elastase)
CLI_RS07465	COG0157	Belongs to the NadC ModD family
CLI_RS07485	COG1272	protein, Hemolysin III
CLI_RS07490	COG0012	GTP binding
CLI_RS07495	COG2001	Belongs to the MraZ family
CLI_RS07510	COG0768	penicillin binding
CLI_RS07520	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CLI_RS07525	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLI_RS07530	COG0772	Belongs to the SEDS family
CLI_RS07545	COG3856	small basic protein
CLI_RS07555	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CLI_RS07575	COG3599	regulation of cell shape
CLI_RS07585	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CLI_RS07590	COG1605	Chorismate mutase
CLI_RS07590	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CLI_RS07600	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLI_RS07605	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CLI_RS07610	COG0564	pseudouridine synthase activity
CLI_RS07615	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLI_RS07620	COG2233	PERMEase
CLI_RS07625	COG0708	Exodeoxyribonuclease III
CLI_RS07630	COG0116	Belongs to the methyltransferase superfamily
CLI_RS07640	COG0725	ABC transporter, periplasmic molybdate-binding protein
CLI_RS07645	COG4149	molybdate abc transporter
CLI_RS07650	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CLI_RS07660	COG1752	Esterase of the alpha-beta hydrolase superfamily
CLI_RS07670	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLI_RS07675	COG1757	Na H antiporter
CLI_RS07685	COG0523	cobalamin synthesis protein
CLI_RS07690	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLI_RS07695	COG5012	cobalamin binding
CLI_RS07700	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLI_RS07710	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLI_RS07715	COG2011	ABC-type metal ion transport system permease component
CLI_RS07720	COG1464	Belongs to the NlpA lipoprotein family
CLI_RS07730	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLI_RS07730	COG1902	pentaerythritol trinitrate reductase activity
CLI_RS07740	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLI_RS07740	COG0723	plastoquinol--plastocyanin reductase activity
CLI_RS07750	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLI_RS07755	COG0667	Aldo Keto reductase
CLI_RS07760	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
CLI_RS07775	COG1309	transcriptional regulator
CLI_RS07785	COG3842	ATPase activity
CLI_RS07795	COG0395	ABC-type sugar transport system, permease component
CLI_RS07810	COG2186	Transcriptional regulator
CLI_RS07840	COG0840	transmembrane signaling receptor activity
CLI_RS07855	COG1733	regulation of RNA biosynthetic process
CLI_RS07865	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CLI_RS07870	COG5564	TIM-barrel signal transduction protein
CLI_RS07880	COG5564	TIM-barrel signal transduction protein
CLI_RS07885	COG3620	sequence-specific DNA binding
CLI_RS07890	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLI_RS07895	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLI_RS07915	COG1639	'signal transduction protein
CLI_RS07925	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLI_RS07945	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLI_RS07950	COG1131	(ABC) transporter
CLI_RS07965	COG2909	trisaccharide binding
CLI_RS07975	COG2378	regulation of single-species biofilm formation
CLI_RS07985	COG1924	4 iron, 4 sulfur cluster binding
CLI_RS07990	COG0720	synthase
CLI_RS07995	COG0602	queuosine metabolic process
CLI_RS08030	COG2390	Transcriptional regulator
CLI_RS08040	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLI_RS08055	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CLI_RS08065	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CLI_RS08085	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CLI_RS08095	COG2391	methyltransferase activity
CLI_RS08105	COG2391	methyltransferase activity
CLI_RS08110	COG0583	DNA-binding transcription factor activity
CLI_RS08120	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLI_RS08125	COG2391	methyltransferase activity
CLI_RS08130	COG1131	(ABC) transporter
CLI_RS08155	COG2235	arginine
CLI_RS08195	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CLI_RS08210	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLI_RS08210	COG2207	Transcriptional regulator
CLI_RS08215	COG2375	cellular response to nickel ion
CLI_RS08215	COG1132	(ABC) transporter
CLI_RS08220	COG1132	(ABC) transporter
CLI_RS08225	COG1609	Transcriptional regulator
CLI_RS08230	COG1940	carbohydrate kinase activity
CLI_RS08235	COG0366	Alpha amylase catalytic
CLI_RS08240	COG1263	PTS System
CLI_RS08240	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS08240	COG2190	(PTS) system
CLI_RS08270	COG2205	protein histidine kinase activity
CLI_RS08295	COG0561	phosphatase activity
CLI_RS08300	COG1349	DNA-binding transcription factor activity
CLI_RS08320	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CLI_RS08330	COG1410	methionine synthase
CLI_RS08330	COG0646	methionine synthase
CLI_RS08360	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CLI_RS08365	COG0022	dehydrogenase e1 component
CLI_RS08370	COG3199	ATP-NAD kinase
CLI_RS08375	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLI_RS08380	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLI_RS08385	COG0095	Lipoate-protein ligase
CLI_RS08390	COG1125	glycine betaine transport
CLI_RS08390	COG0517	IMP dehydrogenase activity
CLI_RS08400	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CLI_RS08410	COG0527	aspartate kinase activity
CLI_RS08415	COG0460	homoserine dehydrogenase
CLI_RS08435	COG0493	'glutamate synthase
CLI_RS08435	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLI_RS08450	COG5492	domain, Protein
CLI_RS08490	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLI_RS08495	COG0840	transmembrane signaling receptor activity
CLI_RS08510	COG1028	Short-chain dehydrogenase reductase Sdr
CLI_RS08515	COG0840	transmembrane signaling receptor activity
CLI_RS08530	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CLI_RS08535	COG2814	Major facilitator Superfamily
CLI_RS08555	COG1136	(ABC) transporter
CLI_RS08560	COG1199	ATP-dependent helicase activity
CLI_RS08560	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLI_RS08565	COG4086	secreted protein
CLI_RS08580	COG2814	Major facilitator Superfamily
CLI_RS08585	COG1309	transcriptional regulator
CLI_RS08595	COG1105	Belongs to the carbohydrate kinase PfkB family
CLI_RS08600	COG3104	oligopeptide transport
CLI_RS08625	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLI_RS08645	COG0840	transmembrane signaling receptor activity
CLI_RS08650	COG0488	(ABC) transporter
CLI_RS08655	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLI_RS08665	COG0835	chemotaxis
CLI_RS08665	COG0784	Response regulator, receiver
CLI_RS08675	COG2996	Protein conserved in bacteria
CLI_RS08695	COG1705	Flagellar rod assembly protein muramidase FlgJ
CLI_RS08700	COG1528	Iron-storage protein
CLI_RS08710	COG2201	protein-glutamate methylesterase activity
CLI_RS08720	COG3314	Sporulation integral membrane protein YlbJ
CLI_RS08740	COG4974	Belongs to the 'phage' integrase family
CLI_RS08755	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CLI_RS08785	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS08795	COG0436	Aminotransferase
CLI_RS08810	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CLI_RS08810	COG0539	negative regulation of cytoplasmic translation
CLI_RS08825	COG2081	HI0933 family
CLI_RS08835	COG1737	Transcriptional regulator
CLI_RS08840	COG1187	pseudouridine synthase activity
CLI_RS08855	COG1215	transferase activity, transferring glycosyl groups
CLI_RS08865	COG0840	transmembrane signaling receptor activity
CLI_RS08870	COG4232	protein-disulfide reductase activity
CLI_RS08880	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLI_RS08890	COG0475	glutathione-regulated potassium exporter activity
CLI_RS08890	COG0569	domain protein
CLI_RS08895	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLI_RS08910	COG0393	Putative heavy-metal-binding
CLI_RS08920	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CLI_RS08940	COG0309	Hydrogenase expression formation protein (HypE)
CLI_RS08945	COG0409	Hydrogenase expression formation protein
CLI_RS08950	COG0298	carbon dioxide binding
CLI_RS08955	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CLI_RS09055	COG0488	(ABC) transporter
CLI_RS09085	COG0628	permease
CLI_RS09090	COG1686	Belongs to the peptidase S11 family
CLI_RS09100	COG3874	Sporulation protein YtfJ
CLI_RS09110	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CLI_RS09120	COG1686	Belongs to the peptidase S11 family
CLI_RS09140	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CLI_RS09145	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CLI_RS09150	COG4974	Belongs to the 'phage' integrase family
CLI_RS09315	COG4626	Terminase
CLI_RS09315	COG1802	Transcriptional regulator
CLI_RS09465	COG4974	Belongs to the 'phage' integrase family
CLI_RS09470	COG0745	RESPONSE REGULATOR receiver
CLI_RS09475	COG0750	zinc metalloprotease
CLI_RS09480	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CLI_RS09485	COG0460	homoserine dehydrogenase
CLI_RS09490	COG2873	o-acetylhomoserine
CLI_RS09495	COG0497	DNA recombination
CLI_RS09510	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CLI_RS09515	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CLI_RS09585	COG3854	ATPases associated with a variety of cellular activities
CLI_RS09645	COG2165	general secretion pathway protein
CLI_RS09655	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CLI_RS09695	COG0076	glutamate decarboxylase activity
CLI_RS09705	COG5278	phosphoserine phosphatase activity
CLI_RS09705	COG0840	transmembrane signaling receptor activity
CLI_RS09725	COG5002	protein histidine kinase activity
CLI_RS09740	COG5002	protein histidine kinase activity
CLI_RS09760	COG1131	(ABC) transporter
CLI_RS09770	COG1132	(ABC) transporter
CLI_RS09780	COG1846	Transcriptional regulator
CLI_RS09785	COG0456	acetyltransferase
CLI_RS09790	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLI_RS09800	COG2414	aldehyde ferredoxin oxidoreductase
CLI_RS09815	COG0315	cyclic pyranopterin monophosphate synthase activity
CLI_RS09825	COG1910	domain protein
CLI_RS09830	COG0303	'Molybdopterin
CLI_RS09835	COG0521	Mo-molybdopterin cofactor biosynthetic process
CLI_RS09840	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLI_RS09855	COG0534	Mate efflux family protein
CLI_RS09870	COG1136	(ABC) transporter
CLI_RS09875	COG0577	efflux transmembrane transporter activity
CLI_RS09885	COG1132	(ABC) transporter
CLI_RS09895	COG4978	Transcriptional regulator
CLI_RS09895	COG0789	Transcriptional regulator
CLI_RS09920	COG4545	Glutaredoxin-related protein
CLI_RS09925	COG0251	oxidation-reduction process
CLI_RS09930	COG1301	dicarboxylic acid transport
CLI_RS09935	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CLI_RS09960	COG5002	protein histidine kinase activity
CLI_RS09965	COG0745	RESPONSE REGULATOR receiver
CLI_RS09975	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLI_RS09980	COG4172	Belongs to the ABC transporter superfamily
CLI_RS09990	COG3457	Alanine racemase
CLI_RS10000	COG0697	spore germination
CLI_RS10005	COG0814	amino acid
CLI_RS10040	COG3263	regulation of cellular component size
CLI_RS10050	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLI_RS10055	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS10055	COG1263	PTS System
CLI_RS10060	COG0366	Alpha amylase catalytic
CLI_RS10065	COG2188	Transcriptional regulator
CLI_RS10070	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI_RS10070	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI_RS10070	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI_RS10075	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI_RS10075	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI_RS10075	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLI_RS10080	COG1105	Belongs to the carbohydrate kinase PfkB family
CLI_RS10120	COG0840	transmembrane signaling receptor activity
CLI_RS10130	COG3457	Alanine racemase
CLI_RS10140	COG0673	inositol 2-dehydrogenase activity
CLI_RS10145	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CLI_RS10155	COG3706	GGDEF domain
CLI_RS10165	COG3829	transcription factor binding
CLI_RS10175	COG2340	Cysteine-rich secretory protein family
CLI_RS10180	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS10185	COG0697	spore germination
CLI_RS10190	COG0436	Aminotransferase
CLI_RS10195	COG1126	abc transporter atp-binding protein
CLI_RS10200	COG0765	amino acid transport
CLI_RS10205	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLI_RS10210	COG3875	lactate racemase activity
CLI_RS10215	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CLI_RS10265	COG0006	proline dipeptidase activity
CLI_RS10280	COG0733	neurotransmitter:sodium symporter activity
CLI_RS10300	COG2304	oxidoreductase activity
CLI_RS10310	COG0714	Associated with various cellular activities
CLI_RS10315	COG4716	Myosin-crossreactive antigen
CLI_RS10345	COG1045	serine acetyltransferase
CLI_RS10395	COG1819	glycosyl
CLI_RS10405	COG0402	S-adenosylhomocysteine deaminase activity
CLI_RS10410	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CLI_RS10485	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI_RS10490	COG1215	transferase activity, transferring glycosyl groups
CLI_RS10525	COG4869	propanediol catabolic process
CLI_RS10530	COG1454	alcohol dehydrogenase
CLI_RS10530	COG1012	belongs to the aldehyde dehydrogenase family
CLI_RS10545	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CLI_RS10575	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLI_RS10580	COG1882	Formate acetyltransferase
CLI_RS10585	COG1012	belongs to the aldehyde dehydrogenase family
CLI_RS10585	COG1454	alcohol dehydrogenase
CLI_RS10615	COG0789	Transcriptional regulator
CLI_RS10625	COG0534	Mate efflux family protein
CLI_RS10630	COG2807	transmembrane transport
CLI_RS10635	COG2186	Transcriptional regulator
CLI_RS10660	COG3878	Protein conserved in bacteria
CLI_RS10675	COG3764	Sortase (surface protein transpeptidase)
CLI_RS10690	COG0745	RESPONSE REGULATOR receiver
CLI_RS10710	COG0577	efflux transmembrane transporter activity
CLI_RS10720	COG3655	Transcriptional regulator
CLI_RS10730	COG1063	alcohol dehydrogenase
CLI_RS10745	COG0577	efflux transmembrane transporter activity
CLI_RS10750	COG1136	(ABC) transporter
CLI_RS10760	COG3711	transcriptional antiterminator
CLI_RS10760	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI_RS10775	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI_RS10780	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CLI_RS10800	COG0110	maltose O-acetyltransferase activity
CLI_RS10810	COG0006	proline dipeptidase activity
CLI_RS10815	COG3104	oligopeptide transport
CLI_RS10820	COG2226	methyltransferase
CLI_RS10825	COG3708	Transcriptional regulator
CLI_RS10825	COG2207	Transcriptional regulator
CLI_RS10905	COG0384	phenazine biosynthesis protein PhzF
CLI_RS10910	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS10940	COG0531	amino acid
CLI_RS10965	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLI_RS10970	COG2086	electron transfer activity
CLI_RS10975	COG1960	acyl-CoA dehydrogenase activity
CLI_RS11015	COG0840	transmembrane signaling receptor activity
CLI_RS11035	COG0346	lactoylglutathione lyase activity
CLI_RS11040	COG2610	gluconate transmembrane transporter activity
CLI_RS11050	COG3395	kinase activity
CLI_RS11055	COG1349	DNA-binding transcription factor activity
CLI_RS11060	COG0456	acetyltransferase
CLI_RS11090	COG5599	Phosphatase
CLI_RS11095	COG1063	alcohol dehydrogenase
CLI_RS11100	COG1151	hydroxylamine reductase activity
CLI_RS11105	COG0375	protein maturation
CLI_RS11110	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CLI_RS11125	COG0489	protein tyrosine kinase activity
CLI_RS11140	COG1360	Flagellar Motor Protein
CLI_RS11145	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CLI_RS11150	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI_RS11150	COG2247	cell wall binding repeat
CLI_RS11165	COG1297	OPT oligopeptide transporter protein
CLI_RS11170	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLI_RS11185	COG1929	Belongs to the glycerate kinase type-1 family
CLI_RS11190	COG1028	Short-chain dehydrogenase reductase Sdr
CLI_RS11195	COG1668	transmembrane transport
CLI_RS11200	COG4555	ABC transporter
CLI_RS11205	COG2153	protein acetylation
CLI_RS11210	COG1846	Transcriptional regulator
CLI_RS11220	COG2205	protein histidine kinase activity
CLI_RS11230	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CLI_RS11240	COG0531	amino acid
CLI_RS11295	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI_RS11315	COG1268	BioY protein
CLI_RS11325	COG1846	Transcriptional regulator
CLI_RS11335	COG0006	proline dipeptidase activity
CLI_RS11340	COG3104	oligopeptide transport
CLI_RS11410	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CLI_RS11415	COG1132	(ABC) transporter
CLI_RS11440	COG2205	protein histidine kinase activity
CLI_RS11445	COG0745	RESPONSE REGULATOR receiver
CLI_RS11465	COG0242	peptide deformylase activity
CLI_RS11515	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLI_RS11590	COG3850	Histidine kinase
CLI_RS11590	COG5002	protein histidine kinase activity
CLI_RS11595	COG0745	RESPONSE REGULATOR receiver
CLI_RS11615	COG1484	DNA-dependent DNA replication
CLI_RS11620	COG1053	succinate dehydrogenase
CLI_RS11715	COG3299	homolog of phage Mu protein gp47
CLI_RS11825	COG3728	DNA packaging
CLI_RS11940	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
CLI_RS11950	COG2155	Conserved Protein
CLI_RS11955	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLI_RS11960	COG0436	Aminotransferase
CLI_RS11965	COG2076	Multidrug Resistance protein
CLI_RS11975	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CLI_RS11980	COG2359	stage V sporulation protein S
CLI_RS11995	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLI_RS12005	COG1674	ftsk spoiiie
CLI_RS12010	COG0740	serine-type endopeptidase activity
CLI_RS12015	COG0527	aspartate kinase activity
CLI_RS12025	COG0612	Peptidase, M16
CLI_RS12040	COG0196	riboflavin kinase activity
CLI_RS12050	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CLI_RS12065	COG1358	cellular component organization or biogenesis
CLI_RS12070	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CLI_RS12075	COG0195	Participates in both transcription termination and antitermination
CLI_RS12090	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CLI_RS12095	COG0750	zinc metalloprotease
CLI_RS12120	COG4589	Belongs to the CDS family
CLI_RS12160	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLI_RS12165	COG0758	DNA mediated transformation
CLI_RS12185	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CLI_RS12190	COG0681	Belongs to the peptidase S26 family
CLI_RS12210	COG1837	Belongs to the UPF0109 family
CLI_RS12220	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLI_RS12230	COG0552	protein localization to endoplasmic reticulum
CLI_RS12255	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI_RS12265	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CLI_RS12270	COG1399	metal-binding, possibly nucleic acid-binding protein
CLI_RS12280	COG0280	phosphate acetyltransferase
CLI_RS12290	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS12295	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS12305	COG0252	asparaginase activity
CLI_RS12305	COG5275	peptidyl-tyrosine sulfation
CLI_RS12345	COG0531	amino acid
CLI_RS12375	COG0252	asparaginase activity
CLI_RS12375	COG5275	peptidyl-tyrosine sulfation
CLI_RS12380	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS12385	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS12395	COG0252	asparaginase activity
CLI_RS12395	COG5275	peptidyl-tyrosine sulfation
CLI_RS12405	COG4656	Part of a membrane complex involved in electron transport
CLI_RS12410	COG5275	peptidyl-tyrosine sulfation
CLI_RS12410	COG0252	asparaginase activity
CLI_RS12415	COG4656	Part of a membrane complex involved in electron transport
CLI_RS12440	COG5275	peptidyl-tyrosine sulfation
CLI_RS12440	COG0252	asparaginase activity
CLI_RS12445	COG4656	Part of a membrane complex involved in electron transport
CLI_RS12450	COG3829	transcription factor binding
CLI_RS12450	COG3290	protein histidine kinase activity
CLI_RS12475	COG0742	ribosomal rna small subunit methyltransferase
CLI_RS12480	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLI_RS12485	COG1461	Dihydroxyacetone kinase
CLI_RS12490	COG1302	Protein conserved in bacteria
CLI_RS12515	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CLI_RS12525	COG0515	serine threonine protein kinase
CLI_RS12525	COG2815	serine threonine protein kinase
CLI_RS12530	COG0631	protein serine/threonine phosphatase activity
CLI_RS12540	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLI_RS12540	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CLI_RS12545	COG2738	Putative neutral zinc metallopeptidase
CLI_RS12555	COG0242	peptide deformylase activity
CLI_RS12560	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLI_RS12565	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLI_RS12575	COG0194	GDP metabolic process
CLI_RS12585	COG1561	YicC-like family, N-terminal region
CLI_RS12600	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CLI_RS12625	COG0704	Plays a role in the regulation of phosphate uptake
CLI_RS12630	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLI_RS12635	COG0581	inorganic phosphate transmembrane transporter activity
CLI_RS12640	COG0573	inorganic phosphate transmembrane transporter activity
CLI_RS12645	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CLI_RS12655	COG0745	RESPONSE REGULATOR receiver
CLI_RS12660	COG1496	oxidoreductase activity
CLI_RS12670	COG1873	PFAM PRC-barrel domain
CLI_RS12675	COG1191	sigma factor activity
CLI_RS12680	COG1191	sigma factor activity
CLI_RS12690	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLI_RS12695	COG0849	cell division
CLI_RS12700	COG1215	transferase activity, transferring glycosyl groups
CLI_RS12735	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
CLI_RS12775	COG0768	penicillin binding
CLI_RS12785	COG0826	peptidase U32
CLI_RS12790	COG4122	O-methyltransferase activity
CLI_RS12795	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CLI_RS12800	COG1217	gtp-binding protein TYPA
CLI_RS12805	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLI_RS12810	COG0735	belongs to the Fur family
CLI_RS12835	COG0628	permease
CLI_RS12845	COG0822	iron-sulfur transferase activity
CLI_RS12850	COG1104	cysteine desulfurase activity
CLI_RS12855	COG1959	2 iron, 2 sulfur cluster binding
CLI_RS12860	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CLI_RS12865	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CLI_RS12890	COG1115	amino acid carrier protein
CLI_RS12895	COG1115	amino acid carrier protein
CLI_RS12910	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLI_RS12920	COG3848	Pyruvate phosphate dikinase
CLI_RS12920	COG0574	Belongs to the PEP-utilizing enzyme family
CLI_RS12935	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLI_RS12990	COG2966	Psort location CytoplasmicMembrane, score
CLI_RS13000	COG1937	Protein conserved in bacteria
CLI_RS13005	COG0561	phosphatase activity
CLI_RS13015	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CLI_RS13020	COG0039	L-malate dehydrogenase activity
CLI_RS13035	COG1362	aminopeptidase activity
CLI_RS13040	COG0598	Magnesium transport protein CorA
CLI_RS13045	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLI_RS13050	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CLI_RS13060	COG0398	Pfam SNARE associated Golgi protein
CLI_RS13065	COG0398	Pfam SNARE associated Golgi protein
CLI_RS13085	COG0463	Glycosyl transferase, family 2
CLI_RS13090	COG2897	thiosulfate sulfurtransferase activity
CLI_RS13095	COG1494	fructose-1,6-bisphosphatase
CLI_RS13110	COG0426	domain, Protein
CLI_RS13160	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLI_RS13165	COG1269	ATP hydrolysis coupled proton transport
CLI_RS13195	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLI_RS13215	COG4786	Flagellar basal body rod
CLI_RS13230	COG1191	sigma factor activity
CLI_RS13240	COG0455	bacterial-type flagellum organization
CLI_RS13245	COG1419	protein localization to endoplasmic reticulum
CLI_RS13250	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLI_RS13255	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLI_RS13265	COG1338	Plays a role in the flagellum-specific transport system
CLI_RS13290	COG1582	Flagellar protein (FlbD)
CLI_RS13295	COG4786	Flagellar basal body rod
CLI_RS13305	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CLI_RS13320	COG1157	protein secretion by the type III secretion system
CLI_RS13330	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLI_RS13340	COG1677	Flagellar hook-basal body complex protein FliE
CLI_RS13345	COG1558	bacterial-type flagellum-dependent cell motility
CLI_RS13350	COG1815	bacterial-type flagellum-dependent cell motility
CLI_RS13355	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLI_RS13385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLI_RS13390	COG4129	membrane
CLI_RS13410	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI_RS13415	COG2089	acid synthase
CLI_RS13420	COG1083	cytidylyl-transferase
CLI_RS13440	COG0562	UDP-galactopyranose mutase
CLI_RS13450	COG0489	protein tyrosine kinase activity
CLI_RS13455	COG4464	protein tyrosine phosphatase activity
CLI_RS13460	COG3944	biosynthesis protein
CLI_RS13465	COG1316	TRANSCRIPTIONal
CLI_RS13485	COG0840	transmembrane signaling receptor activity
CLI_RS13490	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLI_RS13515	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLI_RS13520	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLI_RS13525	COG0110	maltose O-acetyltransferase activity
CLI_RS13540	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CLI_RS13545	COG2089	acid synthase
CLI_RS13555	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CLI_RS13560	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CLI_RS13570	COG2604	Protein of unknown function DUF115
CLI_RS13575	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLI_RS13585	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CLI_RS13590	COG1516	flagellar protein fliS
CLI_RS13620	COG1256	bacterial-type flagellum assembly
CLI_RS13620	COG4786	Flagellar basal body rod
CLI_RS13635	COG1776	CheC inhibitor of MCP methylation
CLI_RS13635	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLI_RS13640	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLI_RS13645	COG0835	chemotaxis
CLI_RS13650	COG2201	protein-glutamate methylesterase activity
CLI_RS13655	COG1776	CheC inhibitor of MCP methylation
CLI_RS13660	COG2198	Histidine kinase
CLI_RS13660	COG0643	Histidine kinase
CLI_RS13665	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CLI_RS13670	COG2201	protein-glutamate methylesterase activity
CLI_RS13690	COG1263	PTS System
CLI_RS13690	COG2190	(PTS) system
CLI_RS13690	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS13695	COG3711	transcriptional antiterminator
CLI_RS13700	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLI_RS13735	COG5002	protein histidine kinase activity
CLI_RS13740	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CLI_RS13740	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CLI_RS13750	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLI_RS13770	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CLI_RS13775	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLI_RS13780	COG0187	DNA topoisomerase II activity
CLI_RS13815	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLI_RS13830	COG2207	Transcriptional regulator
CLI_RS13835	COG1619	proteins homologs of microcin C7 resistance protein MccF
CLI_RS13845	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CLI_RS13850	COG0393	Putative heavy-metal-binding
CLI_RS13865	COG1131	(ABC) transporter
CLI_RS13870	COG1725	Transcriptional regulator
CLI_RS13900	COG0814	amino acid
CLI_RS13905	COG0697	spore germination
CLI_RS13930	COG0513	Belongs to the DEAD box helicase family
CLI_RS13945	COG3290	protein histidine kinase activity
CLI_RS13945	COG0840	transmembrane signaling receptor activity
CLI_RS13955	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLI_RS13965	COG3584	3D domain protein
CLI_RS13965	COG1388	LysM domain
CLI_RS13975	COG0840	transmembrane signaling receptor activity
CLI_RS13985	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLI_RS13990	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLI_RS14010	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CLI_RS14020	COG0493	'glutamate synthase
CLI_RS14025	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLI_RS14055	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CLI_RS14065	COG0840	transmembrane signaling receptor activity
CLI_RS14095	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLI_RS14100	COG2188	Transcriptional regulator
CLI_RS14115	COG3711	transcriptional antiterminator
CLI_RS14125	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS14125	COG1263	PTS System
CLI_RS14130	COG0534	Mate efflux family protein
CLI_RS14135	COG0534	Mate efflux family protein
CLI_RS14140	COG0426	domain, Protein
CLI_RS14145	COG1960	acyl-CoA dehydrogenase activity
CLI_RS14150	COG2801	Transposase and inactivated derivatives
CLI_RS14155	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CLI_RS14165	COG2068	MobA-Related Protein
CLI_RS14170	COG2080	2 iron, 2 sulfur cluster binding
CLI_RS14180	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CLI_RS14185	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLI_RS14185	COG1263	PTS System
CLI_RS14185	COG2190	(PTS) system
CLI_RS14190	COG2723	6-phospho-beta-galactosidase activity
CLI_RS14195	COG3711	transcriptional antiterminator
CLI_RS14200	COG0475	glutathione-regulated potassium exporter activity
CLI_RS14220	COG0488	(ABC) transporter
CLI_RS14245	COG1368	sulfuric ester hydrolase activity
CLI_RS14250	COG0730	response to heat
CLI_RS14260	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CLI_RS14260	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CLI_RS14275	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLI_RS14280	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI_RS14300	COG0697	spore germination
CLI_RS14310	COG0151	Belongs to the GarS family
CLI_RS14320	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CLI_RS14330	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLI_RS14340	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CLI_RS14355	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLI_RS14360	COG0402	S-adenosylhomocysteine deaminase activity
CLI_RS14365	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLI_RS14365	COG0493	'glutamate synthase
CLI_RS14370	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLI_RS14380	COG2233	PERMEase
CLI_RS14390	COG3829	transcription factor binding
CLI_RS14395	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CLI_RS14405	COG3608	succinylglutamate desuccinylase aspartoacylase
CLI_RS14405	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CLI_RS14420	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLI_RS14425	COG1120	ATPase activity
CLI_RS14450	COG2252	PERMEase
CLI_RS14455	COG1115	amino acid carrier protein
CLI_RS14460	COG3973	AAA domain
CLI_RS14480	COG4187	Peptidase family M20/M25/M40
CLI_RS14485	COG1956	GAF domain-containing protein
CLI_RS14490	COG1253	flavin adenine dinucleotide binding
CLI_RS14505	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLI_RS14510	COG1550	Protein conserved in bacteria
CLI_RS14530	COG1725	Transcriptional regulator
CLI_RS14550	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLI_RS14555	COG3773	Cell wall hydrolase
CLI_RS14575	COG0584	glycerophosphoryl diester phosphodiesterase
CLI_RS14590	COG1253	flavin adenine dinucleotide binding
CLI_RS14600	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLI_RS14615	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CLI_RS14620	COG0358	DNA primase activity
CLI_RS14635	COG0574	Belongs to the PEP-utilizing enzyme family
CLI_RS14635	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLI_RS14640	COG0517	IMP dehydrogenase activity
CLI_RS14645	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CLI_RS14650	COG1381	Involved in DNA repair and RecF pathway recombination
CLI_RS14675	COG1480	7TM receptor with intracellular HD hydrolase
CLI_RS14690	COG1610	YqeY-like protein
CLI_RS14700	COG0537	adenosine 5'-monophosphoramidase activity
CLI_RS14705	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CLI_RS14710	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CLI_RS14720	COG0484	heat shock protein binding
CLI_RS14740	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLI_RS14810	COG0709	Synthesizes selenophosphate from selenide and ATP
CLI_RS14820	COG1686	Belongs to the peptidase S11 family
CLI_RS14825	COG0564	pseudouridine synthase activity
CLI_RS14830	COG0251	oxidation-reduction process
CLI_RS14835	COG1316	TRANSCRIPTIONal
CLI_RS14840	COG1713	HD superfamily hydrolase involved in NAD metabolism
CLI_RS14850	COG1534	Rna-binding protein
CLI_RS14895	COG0739	heme binding
CLI_RS14900	COG0772	Belongs to the SEDS family
CLI_RS14910	COG2894	cell division
CLI_RS14915	COG0850	regulation of cytokinetic process
CLI_RS14920	COG0768	penicillin binding
CLI_RS14935	COG1077	Cell shape determining protein MreB Mrl
CLI_RS14990	COG0237	dephospho-CoA kinase activity
CLI_RS14995	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLI_RS14995	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLI_RS15140	COG1484	DNA-dependent DNA replication
CLI_RS15225	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLI_RS15230	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLI_RS15240	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLI_RS15255	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLI_RS15255	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLI_RS15260	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLI_RS15280	COG1862	Preprotein translocase
CLI_RS15315	COG1739	Uncharacterized protein family UPF0029
CLI_RS15325	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLI_RS15340	COG1773	rubredoxin
CLI_RS15345	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLI_RS15350	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLI_RS15370	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLI_RS15385	COG2172	sigma factor antagonist activity
CLI_RS15405	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
CLI_RS15420	COG0728	peptidoglycan biosynthetic process
CLI_RS15430	COG0438	transferase activity, transferring glycosyl groups
CLI_RS15450	COG0438	transferase activity, transferring glycosyl groups
CLI_RS15490	COG1086	Polysaccharide biosynthesis protein
CLI_RS15495	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI_RS15495	COG2247	cell wall binding repeat
CLI_RS15510	COG4193	domain, Protein
CLI_RS15515	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CLI_RS15525	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLI_RS15530	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CLI_RS15535	COG1982	Orn Lys Arg decarboxylase major
CLI_RS15545	COG0280	phosphate acetyltransferase
CLI_RS15555	COG1683	Conserved Protein
CLI_RS15565	COG0826	peptidase U32
CLI_RS15590	COG0457	Tetratricopeptide repeat
CLI_RS15590	COG0463	Glycosyl transferase, family 2
CLI_RS15610	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLI_RS15615	COG0569	domain protein
CLI_RS15620	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CLI_RS15635	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLI_RS15660	COG1131	(ABC) transporter
CLI_RS15695	COG2226	methyltransferase
CLI_RS15705	COG4608	Belongs to the ABC transporter superfamily
CLI_RS15710	COG0444	Belongs to the ABC transporter superfamily
CLI_RS15715	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLI_RS15720	COG0601	transmembrane transport
CLI_RS15730	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLI_RS15740	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CLI_RS15745	COG0436	Aminotransferase
CLI_RS15795	COG1247	-acetyltransferase
CLI_RS15800	COG1404	Belongs to the peptidase S8 family
CLI_RS15815	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CLI_RS15825	COG1132	(ABC) transporter
CLI_RS15830	COG1136	(ABC) transporter
CLI_RS15840	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLI_RS15850	COG1396	sequence-specific DNA binding
CLI_RS15870	COG3505	Type IV secretory pathway VirD4
CLI_RS15900	COG3023	N-Acetylmuramoyl-L-alanine amidase
CLI_RS16015	COG0582	viral genome integration into host DNA
CLI_RS16120	COG3620	sequence-specific DNA binding
CLI_RS16125	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CLI_RS16130	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLI_RS16140	COG1116	anion transmembrane transporter activity
CLI_RS16145	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLI_RS16165	COG0612	Peptidase, M16
CLI_RS16190	COG3123	guanosine phosphorylase activity
CLI_RS16195	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLI_RS16210	COG1396	sequence-specific DNA binding
CLI_RS16215	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CLI_RS16230	COG0714	Associated with various cellular activities
CLI_RS16260	COG1924	4 iron, 4 sulfur cluster binding
CLI_RS16270	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLI_RS16275	COG2086	electron transfer activity
CLI_RS16280	COG1960	acyl-CoA dehydrogenase activity
CLI_RS16285	COG0183	Belongs to the thiolase family
CLI_RS16290	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLI_RS16295	COG1024	Enoyl-CoA hydratase
CLI_RS16310	COG2252	PERMEase
CLI_RS16345	COG0584	glycerophosphoryl diester phosphodiesterase
CLI_RS16350	COG0840	transmembrane signaling receptor activity
CLI_RS16355	COG1773	rubredoxin
CLI_RS16355	COG1592	Rubrerythrin
CLI_RS16385	COG0735	belongs to the Fur family
CLI_RS16400	COG2378	regulation of single-species biofilm formation
CLI_RS16425	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CLI_RS16430	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CLI_RS16435	COG1067	ATP-dependent peptidase activity
CLI_RS16435	COG0470	DNA polymerase III
CLI_RS16455	COG1082	Xylose isomerase domain protein TIM barrel
CLI_RS16470	COG0167	dihydroorotate dehydrogenase activity
CLI_RS16475	COG0543	2 iron, 2 sulfur cluster binding
CLI_RS16500	COG1924	4 iron, 4 sulfur cluster binding
CLI_RS16510	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CLI_RS16515	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CLI_RS16535	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLI_RS16695	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CLI_RS16710	COG0747	negative chemotaxis
CLI_RS16745	COG0210	DNA helicase
CLI_RS16750	COG4496	protein, YerC YecD
CLI_RS16755	COG1187	pseudouridine synthase activity
CLI_RS16760	COG0741	lytic transglycosylase activity
CLI_RS16775	COG1671	Belongs to the UPF0178 family
CLI_RS16790	COG1309	transcriptional regulator
CLI_RS16800	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLI_RS16815	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLI_RS16820	COG2086	electron transfer activity
CLI_RS16825	COG1960	acyl-CoA dehydrogenase activity
CLI_RS16850	COG0318	PFAM AMP-dependent synthetase and ligase
CLI_RS16855	COG1114	Component of the transport system for branched-chain amino acids
CLI_RS16865	COG0517	IMP dehydrogenase activity
CLI_RS16865	COG0516	GMP reductase activity
CLI_RS16870	COG0037	tRNA processing
CLI_RS16890	COG0398	Pfam SNARE associated Golgi protein
CLI_RS16920	COG0488	(ABC) transporter
CLI_RS16925	COG3279	Response regulator of the LytR AlgR family
CLI_RS16930	COG3275	phosphorelay sensor kinase activity
CLI_RS16935	COG1966	Carbon starvation protein
CLI_RS16945	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CLI_RS16960	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLI_RS16985	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CLI_RS16990	COG0802	atpase or kinase
CLI_RS16995	COG1214	PFAM Peptidase M22, glycoprotease
CLI_RS17000	COG0456	acetyltransferase
CLI_RS17035	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CLI_RS17040	COG0561	phosphatase activity
CLI_RS17055	COG2033	superoxide reductase activity
CLI_RS17065	COG3459	Glycosyltransferase 36 associated
CLI_RS17080	COG1362	aminopeptidase activity
CLI_RS17085	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLI_RS17095	COG3973	AAA domain
CLI_RS17100	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLI_RS17105	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLI_RS17115	COG2827	Endonuclease containing a URI domain
CLI_RS17125	COG1131	(ABC) transporter
CLI_RS17135	COG1595	DNA-templated transcription, initiation
CLI_RS17140	COG0659	secondary active sulfate transmembrane transporter activity
CLI_RS17160	COG1131	(ABC) transporter
CLI_RS17180	COG2971	BadF BadG BcrA BcrD
CLI_RS17185	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLI_RS17195	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CLI_RS17195	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CLI_RS17200	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLI_RS17205	COG1486	melibiose metabolic process
CLI_RS17210	COG2203	Gaf domain
CLI_RS17210	COG5001	Diguanylate cyclase
CLI_RS17210	COG4251	negative regulation of phosphorylation
CLI_RS17210	COG3706	GGDEF domain
CLI_RS17215	COG4974	Belongs to the 'phage' integrase family
CLI_RS17230	COG5566	PFAM Mor transcription activator
CLI_RS17235	COG1733	regulation of RNA biosynthetic process
CLI_RS17250	COG0656	L-ascorbic acid biosynthetic process
CLI_RS17260	COG0789	Transcriptional regulator
CLI_RS17275	COG1959	2 iron, 2 sulfur cluster binding
CLI_RS17280	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CLI_RS17300	COG0469	pyruvate kinase activity
CLI_RS17320	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CLI_RS17345	COG1988	membrane-bound metal-dependent
CLI_RS17355	COG0768	penicillin binding
CLI_RS17365	COG1716	ATPase activity
CLI_RS17380	COG0750	zinc metalloprotease
CLI_RS17385	COG0793	Belongs to the peptidase S41A family
CLI_RS17385	COG3409	Peptidoglycan-binding domain 1 protein
CLI_RS17390	COG2177	Part of the ABC transporter FtsEX involved in
CLI_RS17395	COG2884	Cell division ATP-binding protein ftsE
CLI_RS17400	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLI_RS17410	COG3958	Transketolase
CLI_RS17415	COG3959	Transketolase, thiamine diphosphate binding domain
CLI_RS17430	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLI_RS17440	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CLI_RS17440	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CLI_RS17460	COG1295	ribonuclease BN
CLI_RS17485	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CLI_RS17490	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CLI_RS17495	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLI_RS17500	COG1028	Short-chain dehydrogenase reductase Sdr
CLI_RS17510	COG3732	PTS system glucitol sorbitol-specific
CLI_RS17525	COG1063	alcohol dehydrogenase
CLI_RS17550	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CLI_RS17550	COG0674	pyruvate-flavodoxin oxidoreductase activity
CLI_RS17570	COG0280	phosphate acetyltransferase
CLI_RS17575	COG3426	butyrate kinase activity
CLI_RS17580	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
CLI_RS17590	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLI_RS17595	COG3773	Cell wall hydrolase
CLI_RS17600	COG0492	ferredoxin-NADP+ reductase activity
CLI_RS17605	COG3118	belongs to the thioredoxin family
CLI_RS17610	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLI_RS17625	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLI_RS17630	COG3829	transcription factor binding
CLI_RS17630	COG3290	protein histidine kinase activity
CLI_RS17645	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CLI_RS17645	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CLI_RS17650	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLI_RS17655	COG1283	sodium-dependent phosphate transmembrane transporter activity
CLI_RS17670	COG0101	tRNA pseudouridine synthase activity
CLI_RS17675	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLI_RS17685	COG1122	ATPase activity
CLI_RS17715	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CLI_RS17870	COG1358	cellular component organization or biogenesis
CLI_RS17945	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLI_RS17965	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLI_RS17980	COG4956	integral membrane protein (PIN domain superfamily)
CLI_RS17995	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLI_RS18000	COG0542	response to heat
CLI_RS18005	COG3869	Catalyzes the specific phosphorylation of arginine residues in
CLI_RS18010	COG3880	PFAM UvrB UvrC protein
CLI_RS18025	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLI_RS18095	COG0423	glycine-tRNA ligase activity
CLI_RS18115	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLI_RS18130	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLI_RS18135	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLI_RS18145	COG2208	phosphoserine phosphatase activity
CLI_RS18185	COG1098	S1 RNA binding domain
CLI_RS18205	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CLI_RS18215	COG3956	TIGRFAM MazG family protein
CLI_RS18220	COG2244	polysaccharide biosynthetic process
CLI_RS18225	COG2002	toxin-antitoxin pair type II binding
CLI_RS18235	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLI_RS18245	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLI_RS18250	COG5002	protein histidine kinase activity
CLI_RS18255	COG0745	RESPONSE REGULATOR receiver
CLI_RS18275	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLI_RS18315	COG1242	4 iron, 4 sulfur cluster binding
CLI_RS18325	COG3949	Membrane
CLI_RS18335	COG0840	transmembrane signaling receptor activity
CLI_RS18350	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLI_RS18360	COG0174	glutamine synthetase
CLI_RS18375	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CLI_RS18385	COG0653	protein targeting
CLI_RS18395	COG2814	Major facilitator Superfamily
CLI_RS18405	COG1309	transcriptional regulator
CLI_RS18415	COG0024	Methionine aminopeptidase
CLI_RS18425	COG0252	asparaginase activity
CLI_RS18425	COG5275	peptidyl-tyrosine sulfation
CLI_RS18430	COG5275	peptidyl-tyrosine sulfation
CLI_RS18430	COG0252	asparaginase activity
CLI_RS18435	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CLI_RS18445	COG5275	peptidyl-tyrosine sulfation
CLI_RS18445	COG0252	asparaginase activity
CLI_RS18450	COG4656	Part of a membrane complex involved in electron transport
CLI_RS18455	COG1328	CTP reductase activity
CLI_RS18460	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLI_RS18470	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CLI_RS18480	COG1160	GTP binding
CLI_RS18490	COG0438	transferase activity, transferring glycosyl groups
CLI_RS18495	COG0613	PHP domain protein
CLI_RS18510	COG0583	DNA-binding transcription factor activity
CLI_RS18515	COG1404	Belongs to the peptidase S8 family
CLI_RS18520	COG0583	DNA-binding transcription factor activity
CLI_RS18530	COG0825	malonyl-CoA metabolic process
CLI_RS18540	COG0439	Biotin carboxylase
CLI_RS18550	COG0511	ligase activity, forming carbon-carbon bonds
CLI_RS18555	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLI_RS18560	COG1028	Short-chain dehydrogenase reductase Sdr
CLI_RS18565	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CLI_RS18575	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLI_RS18595	COG0739	heme binding
CLI_RS18675	COG2081	HI0933 family
CLI_RS18705	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLI_RS18710	COG0305	Participates in initiation and elongation during chromosome replication
CLI_RS18715	COG0470	DNA polymerase III
CLI_RS18715	COG1067	ATP-dependent peptidase activity
CLI_RS18725	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CLI_RS18755	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CLI_RS18765	COG0668	transmembrane transport
CLI_RS18780	COG0628	permease
CLI_RS18800	COG1475	DNA binding
CLI_RS18805	COG1192	Involved in chromosome partitioning
CLI_RS18810	COG1475	DNA binding
CLI_RS18830	COG1847	R3H domain protein
CLI_RS18890	COG0187	DNA topoisomerase II activity