locus-tag	class	description
BJL90_RS00005	PF00664	ABC transporter transmembrane region
BJL90_RS00005	PF00005	ABC transporter
BJL90_RS00025	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS00025	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00030	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00035	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS00040	PF08241	Methyltransferase domain
BJL90_RS00050	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS00055	PF00005	ABC transporter
BJL90_RS00055	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS00060	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS00060	PF00005	ABC transporter
BJL90_RS00065	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS00065	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00070	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00080	PF00005	ABC transporter
BJL90_RS00080	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS00085	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS00085	PF00005	ABC transporter
BJL90_RS00090	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS00095	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS00095	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00100	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00105	PF05161	MOFRL family
BJL90_RS00105	PF13660	Domain of unknown function (DUF4147)
BJL90_RS00110	PF00294	pfkB family carbohydrate kinase
BJL90_RS00115	PF00107	Zinc-binding dehydrogenase
BJL90_RS00115	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS00120	PF00356	Bacterial regulatory proteins, lacI family
BJL90_RS00125	PF05949	Bacterial protein of unknown function (DUF881)
BJL90_RS00135	PF06508	Queuosine biosynthesis protein QueC
BJL90_RS00140	PF04055	Radical SAM superfamily
BJL90_RS00145	PF01554	MatE
BJL90_RS00150	PF00005	ABC transporter
BJL90_RS00150	PF00664	ABC transporter transmembrane region
BJL90_RS00160	PF02311	AraC-like ligand binding domain
BJL90_RS00160	PF12833	Helix-turn-helix domain
BJL90_RS00165	PF01242	6-pyruvoyl tetrahydropterin synthase
BJL90_RS00170	PF01869	BadF/BadG/BcrA/BcrD ATPase family
BJL90_RS00195	PF00005	ABC transporter
BJL90_RS00205	PF01869	BadF/BadG/BcrA/BcrD ATPase family
BJL90_RS00215	PF00403	Heavy-metal-associated domain
BJL90_RS00245	PF00690	Cation transporter/ATPase, N-terminus
BJL90_RS00245	PF00689	Cation transporting ATPase, C-terminus
BJL90_RS00265	PF13426	PAS domain
BJL90_RS00265	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS00265	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS00265	PF08448	PAS fold
BJL90_RS00265	PF00072	Response regulator receiver domain
BJL90_RS00270	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS00270	PF00072	Response regulator receiver domain
BJL90_RS00270	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS00270	PF09308	LuxQ, periplasmic
BJL90_RS00285	PF00107	Zinc-binding dehydrogenase
BJL90_RS00285	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS00300	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS00305	PF00356	Bacterial regulatory proteins, lacI family
BJL90_RS00310	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
BJL90_RS00320	PF00795	Carbon-nitrogen hydrolase
BJL90_RS00320	PF02540	NAD synthase
BJL90_RS00330	PF00664	ABC transporter transmembrane region
BJL90_RS00330	PF00005	ABC transporter
BJL90_RS00335	PF00664	ABC transporter transmembrane region
BJL90_RS00335	PF00005	ABC transporter
BJL90_RS00345	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BJL90_RS00345	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BJL90_RS00350	PF01061	ABC-2 type transporter
BJL90_RS00355	PF00005	ABC transporter
BJL90_RS00360	PF10502	Signal peptidase, peptidase S26 
BJL90_RS00365	PF01713	Smr domain
BJL90_RS00365	PF00488	MutS domain V
BJL90_RS00390	PF00082	Subtilase family
BJL90_RS00400	PF00082	Subtilase family
BJL90_RS00410	PF01609	Transposase DDE domain
BJL90_RS00445	PF00005	ABC transporter
BJL90_RS00445	PF02687	FtsX-like permease family
BJL90_RS00445	PF12704	MacB-like periplasmic core domain
BJL90_RS00450	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BJL90_RS00450	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BJL90_RS00460	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
BJL90_RS00460	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS00470	PF10609	NUBPL iron-transfer P-loop NTPase
BJL90_RS00490	PF02001	Protein of unknown function  DUF134
BJL90_RS00500	PF01487	Type I 3-dehydroquinase
BJL90_RS00510	PF02310	B12 binding domain
BJL90_RS00510	PF02607	B12 binding domain
BJL90_RS00520	PF00578	AhpC/TSA family
BJL90_RS00525	PF00817	impB/mucB/samB family
BJL90_RS00525	PF11799	impB/mucB/samB family C-terminal domain
BJL90_RS00530	PF02696	Uncharacterized ACR, YdiU/UPF0061 family
BJL90_RS00545	PF01098	Cell cycle protein
BJL90_RS00550	PF03551	Transcriptional regulator PadR-like family
BJL90_RS00555	PF13307	Helicase C-terminal domain
BJL90_RS00570	PF00155	Aminotransferase class I and II
BJL90_RS00570	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS00575	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS00595	PF00892	EamA-like transporter family
BJL90_RS00600	PF10100	Staphylopine dehydrogenase
BJL90_RS00615	PF00005	ABC transporter
BJL90_RS00620	PF00005	ABC transporter
BJL90_RS00625	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS00625	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00630	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS00635	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS00640	PF00936	BMC domain
BJL90_RS00645	PF06130	Phosphate propanoyltransferase
BJL90_RS00650	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS00650	PF00171	Aldehyde dehydrogenase family
BJL90_RS00655	PF00936	BMC domain
BJL90_RS00665	PF00936	BMC domain
BJL90_RS00670	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS00670	PF13375	RnfC Barrel sandwich hybrid domain
BJL90_RS00670	PF13237	4Fe-4S dicluster domain
BJL90_RS00670	PF10531	SLBB domain
BJL90_RS00675	PF03319	Ethanolamine utilisation protein EutN/carboxysome
BJL90_RS00695	PF13187	4Fe-4S dicluster domain
BJL90_RS00695	PF04055	Radical SAM superfamily
BJL90_RS00700	PF01695	IstB-like ATP binding protein
BJL90_RS00710	PF01228	Glycine radical
BJL90_RS00710	PF02901	Pyruvate formate lyase-like
BJL90_RS00715	PF00936	BMC domain
BJL90_RS00720	PF00936	BMC domain
BJL90_RS00740	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS00745	PF07694	5TMR of 5TMR-LYT
BJL90_RS00745	PF06580	Histidine kinase
BJL90_RS00750	PF12833	Helix-turn-helix domain
BJL90_RS00750	PF10114	Sensory domain found in PocR
BJL90_RS00755	PF01235	Sodium:alanine symporter family
BJL90_RS00765	PF07883	Cupin domain
BJL90_RS00785	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BJL90_RS00785	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
BJL90_RS00795	PF00111	2Fe-2S iron-sulfur cluster binding domain
BJL90_RS00795	PF01799	[2Fe-2S] binding domain
BJL90_RS00805	PF01522	Polysaccharide deacetylase
BJL90_RS00830	PF02779	Transketolase, pyrimidine binding domain
BJL90_RS00830	PF02780	Transketolase, C-terminal domain
BJL90_RS00830	PF00456	Transketolase, thiamine diphosphate binding domain
BJL90_RS00840	PF00365	Phosphofructokinase
BJL90_RS00845	PF02734	DAK2 domain
BJL90_RS00850	PF02733	Dak1 domain
BJL90_RS00855	PF02502	Ribose/Galactose Isomerase
BJL90_RS00860	PF00107	Zinc-binding dehydrogenase
BJL90_RS00860	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS00865	PF01547	Bacterial extracellular solute-binding protein
BJL90_RS00870	PF00072	Response regulator receiver domain
BJL90_RS00870	PF12833	Helix-turn-helix domain
BJL90_RS00875	PF02743	Cache domain
BJL90_RS00875	PF00672	HAMP domain
BJL90_RS00875	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS00875	PF06580	Histidine kinase
BJL90_RS00890	PF00106	short chain dehydrogenase
BJL90_RS00900	PF11553	Protein of unknown function (DUF3231)
BJL90_RS00915	PF12833	Helix-turn-helix domain
BJL90_RS00915	PF06445	GyrI-like small molecule binding domain
BJL90_RS00920	PF01636	Phosphotransferase enzyme family
BJL90_RS00945	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
BJL90_RS00945	PF00391	PEP-utilising enzyme, mobile domain
BJL90_RS00965	PF00072	Response regulator receiver domain
BJL90_RS00965	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS00970	PF01522	Polysaccharide deacetylase
BJL90_RS00980	PF00206	Lyase
BJL90_RS00980	PF10415	Fumarase C C-terminus
BJL90_RS00995	PF00005	ABC transporter
BJL90_RS01000	PF01032	FecCD transport family
BJL90_RS01005	PF01032	FecCD transport family
BJL90_RS01010	PF01497	Periplasmic binding protein
BJL90_RS01015	PF02311	AraC-like ligand binding domain
BJL90_RS01015	PF12833	Helix-turn-helix domain
BJL90_RS01065	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS01065	PF13007	Transposase C of IS166 homeodomain
BJL90_RS01065	PF13817	IS66 C-terminal element
BJL90_RS01065	PF03050	Transposase IS66 family 
BJL90_RS01090	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS01090	PF13305	Tetracyclin repressor-like, C-terminal domain
BJL90_RS01105	PF01695	IstB-like ATP binding protein
BJL90_RS01120	PF00239	Resolvase, N terminal domain
BJL90_RS01120	PF02796	Helix-turn-helix domain of resolvase
BJL90_RS01175	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS01225	PF13007	Transposase C of IS166 homeodomain
BJL90_RS01225	PF13817	IS66 C-terminal element
BJL90_RS01225	PF03050	Transposase IS66 family 
BJL90_RS01225	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS01245	PF12008	Type I restriction and modification enzyme - subunit R C terminal
BJL90_RS01245	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
BJL90_RS01245	PF18766	SWI2/SNF2 ATPase
BJL90_RS01255	PF12161	HsdM N-terminal domain
BJL90_RS01255	PF02384	N-6 DNA Methylase
BJL90_RS01290	PF01966	HD domain
BJL90_RS01345	PF01381	Helix-turn-helix
BJL90_RS01345	PF07883	Cupin domain
BJL90_RS01355	PF00589	Phage integrase family
BJL90_RS01355	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS01380	PF03432	Relaxase/Mobilisation nuclease domain 
BJL90_RS01390	PF09565	NgoFVII restriction endonuclease
BJL90_RS01405	PF07804	HipA-like C-terminal domain
BJL90_RS01435	PF08401	Domain of unknown function (DUF1738)
BJL90_RS01435	PF18818	Metallopeptidase superfamily domain
BJL90_RS01455	PF02368	Bacterial Ig-like domain (group 2)
BJL90_RS01460	PF01131	DNA topoisomerase
BJL90_RS01460	PF01751	Toprim domain
BJL90_RS01490	PF01551	Peptidase family M23
BJL90_RS01490	PF01476	LysM domain
BJL90_RS01490	PF08525	Opacity-associated protein A N-terminal motif
BJL90_RS01535	PF01938	TRAM domain
BJL90_RS01535	PF05958	tRNA (Uracil-5-)-methyltransferase
BJL90_RS01545	PF04186	FxsA cytoplasmic membrane protein 
BJL90_RS01550	PF03061	Thioesterase superfamily
BJL90_RS01555	PF00224	Pyruvate kinase, barrel domain
BJL90_RS01555	PF02887	Pyruvate kinase, alpha/beta domain
BJL90_RS01555	PF00391	PEP-utilising enzyme, mobile domain
BJL90_RS01560	PF00365	Phosphofructokinase
BJL90_RS01570	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BJL90_RS01570	PF14579	Helix-hairpin-helix motif
BJL90_RS01570	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BJL90_RS01570	PF02811	PHP domain
BJL90_RS01585	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS01585	PF01348	Type II intron maturase
BJL90_RS01590	PF14579	Helix-hairpin-helix motif
BJL90_RS01590	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BJL90_RS01590	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BJL90_RS01590	PF02811	PHP domain
BJL90_RS01590	PF01336	OB-fold nucleic acid binding domain
BJL90_RS01600	PF07690	Major Facilitator Superfamily
BJL90_RS01610	PF07702	UTRA domain
BJL90_RS01610	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS01615	PF02607	B12 binding domain
BJL90_RS01615	PF02310	B12 binding domain
BJL90_RS01620	PF02310	B12 binding domain
BJL90_RS01620	PF02607	B12 binding domain
BJL90_RS01630	PF00474	Sodium:solute symporter family
BJL90_RS01645	PF02310	B12 binding domain
BJL90_RS01645	PF02607	B12 binding domain
BJL90_RS01655	PF02607	B12 binding domain
BJL90_RS01655	PF02310	B12 binding domain
BJL90_RS01670	PF04961	Formiminotransferase-cyclodeaminase
BJL90_RS01675	PF01979	Amidohydrolase family
BJL90_RS01680	PF07837	Formiminotransferase domain, N-terminal subdomain
BJL90_RS01680	PF02971	Formiminotransferase domain
BJL90_RS01685	PF17391	Urocanase N-terminal domain
BJL90_RS01685	PF17392	Urocanase C-terminal domain
BJL90_RS01685	PF01175	Urocanase Rossmann-like domain
BJL90_RS01690	PF01966	HD domain
BJL90_RS01690	PF11871	Domain of unknown function (DUF3391)
BJL90_RS01695	PF02650	WhiA C-terminal HTH domain
BJL90_RS01695	PF14527	WhiA LAGLIDADG-like domain
BJL90_RS01695	PF10298	WhiA N-terminal LAGLIDADG-like domain
BJL90_RS01710	PF01933	Uncharacterised protein family UPF0052
BJL90_RS01715	PF03668	P-loop ATPase protein family
BJL90_RS01720	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
BJL90_RS01720	PF01565	FAD binding domain 
BJL90_RS01735	PF04055	Radical SAM superfamily
BJL90_RS01735	PF06463	Molybdenum Cofactor Synthesis C
BJL90_RS01740	PF02634	FdhD/NarQ family
BJL90_RS01750	PF00384	Molybdopterin oxidoreductase
BJL90_RS01750	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS01750	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS01755	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS01755	PF12838	4Fe-4S dicluster domain
BJL90_RS01755	PF00384	Molybdopterin oxidoreductase
BJL90_RS01755	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS01755	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BJL90_RS01760	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BJL90_RS01760	PF00037	4Fe-4S binding domain
BJL90_RS01760	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS01775	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BJL90_RS01775	PF00037	4Fe-4S binding domain
BJL90_RS01775	PF02256	Iron hydrogenase small subunit
BJL90_RS01775	PF02906	Iron only hydrogenase large subunit, C-terminal domain
BJL90_RS01780	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS01780	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BJL90_RS01780	PF00037	4Fe-4S binding domain
BJL90_RS01795	PF07475	HPr Serine kinase C-terminal domain
BJL90_RS01795	PF02603	HPr Serine kinase N terminus
BJL90_RS01800	PF12826	Helix-hairpin-helix motif
BJL90_RS01800	PF01541	GIY-YIG catalytic domain
BJL90_RS01800	PF08459	UvrC Helix-hairpin-helix N-terminal
BJL90_RS01800	PF02151	UvrB/uvrC motif
BJL90_RS01810	PF17760	UvrA interaction domain
BJL90_RS01810	PF17755	UvrA DNA-binding domain
BJL90_RS01815	PF00271	Helicase conserved C-terminal domain
BJL90_RS01815	PF02151	UvrB/uvrC motif
BJL90_RS01815	PF12344	Ultra-violet resistance protein B
BJL90_RS01815	PF17757	UvrB interaction domain
BJL90_RS01815	PF04851	Type III restriction enzyme, res subunit
BJL90_RS01820	PF03572	Peptidase family S41
BJL90_RS01820	PF13180	PDZ domain
BJL90_RS01825	PF04225	Opacity-associated protein A LysM-like domain
BJL90_RS01825	PF01551	Peptidase family M23
BJL90_RS01830	PF02687	FtsX-like permease family
BJL90_RS01830	PF18075	FtsX extracellular domain
BJL90_RS01835	PF00005	ABC transporter
BJL90_RS01840	PF01812	5-formyltetrahydrofolate cyclo-ligase family
BJL90_RS01845	PF00158	Sigma-54 interaction domain
BJL90_RS01845	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS01845	PF00072	Response regulator receiver domain
BJL90_RS01850	PF08447	PAS fold
BJL90_RS01850	PF00989	PAS fold
BJL90_RS01850	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS01850	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS01860	PF00403	Heavy-metal-associated domain
BJL90_RS01910	PF00005	ABC transporter
BJL90_RS01915	PF00005	ABC transporter
BJL90_RS01915	PF12399	Branched-chain amino acid ATP-binding cassette transporter
BJL90_RS01920	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS01920	PF11862	Domain of unknown function (DUF3382)
BJL90_RS01925	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS01935	PF05362	Lon protease (S16) C-terminal proteolytic domain
BJL90_RS01935	PF13654	AAA domain
BJL90_RS01940	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
BJL90_RS01940	PF01476	LysM domain
BJL90_RS01945	PF00005	ABC transporter
BJL90_RS01945	PF00571	CBS domain
BJL90_RS01950	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS01970	PF02780	Transketolase, C-terminal domain
BJL90_RS01970	PF02779	Transketolase, pyrimidine binding domain
BJL90_RS01975	PF00456	Transketolase, thiamine diphosphate binding domain
BJL90_RS01980	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BJL90_RS01980	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BJL90_RS01985	PF03808	Glycosyl transferase WecB/TagA/CpsF family
BJL90_RS02000	PF01757	Acyltransferase family
BJL90_RS02010	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system
BJL90_RS02020	PF01168	Alanine racemase, N-terminal domain
BJL90_RS02020	PF00842	Alanine racemase, C-terminal domain
BJL90_RS02030	PF01648	4'-phosphopantetheinyl transferase superfamily
BJL90_RS02045	PF00361	Proton-conducting membrane transporter
BJL90_RS02050	PF00361	Proton-conducting membrane transporter
BJL90_RS02055	PF00361	Proton-conducting membrane transporter
BJL90_RS02065	PF04039	Domain related to MnhB subunit of Na+/H+ antiporter
BJL90_RS02080	PF03334	Na+/H+ antiporter subunit
BJL90_RS02085	PF04066	Multiple resistance and pH regulation protein F (MrpF / PhaF)
BJL90_RS02090	PF01899	Na+/H+ ion antiporter subunit
BJL90_RS02105	PF00571	CBS domain
BJL90_RS02105	PF01743	Poly A polymerase head domain
BJL90_RS02110	PF13690	Chemotaxis phosphatase CheX
BJL90_RS02115	PF00156	Phosphoribosyl transferase domain
BJL90_RS02120	PF13361	UvrD-like helicase C-terminal domain
BJL90_RS02120	PF12705	PD-(D/E)XK nuclease superfamily
BJL90_RS02120	PF00580	UvrD/REP helicase N-terminal domain
BJL90_RS02125	PF12705	PD-(D/E)XK nuclease superfamily
BJL90_RS02140	PF02915	Rubrerythrin
BJL90_RS02145	PF02666	Phosphatidylserine decarboxylase
BJL90_RS02150	PF00156	Phosphoribosyl transferase domain
BJL90_RS02155	PF01180	Dihydroorotate dehydrogenase
BJL90_RS02160	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
BJL90_RS02165	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BJL90_RS02165	PF02142	MGS-like domain
BJL90_RS02165	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BJL90_RS02170	PF00117	Glutamine amidotransferase class-I
BJL90_RS02170	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
BJL90_RS02175	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
BJL90_RS02180	PF01979	Amidohydrolase family
BJL90_RS02190	PF00180	Isocitrate/isopropylmalate dehydrogenase
BJL90_RS02195	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BJL90_RS02195	PF01842	ACT domain
BJL90_RS02195	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
BJL90_RS02220	PF17805	AsnC-like ligand binding domain
BJL90_RS02225	PF17805	AsnC-like ligand binding domain
BJL90_RS02225	PF13404	AsnC-type helix-turn-helix domain
BJL90_RS02230	PF04055	Radical SAM superfamily
BJL90_RS02230	PF13186	Iron-sulfur cluster-binding domain
BJL90_RS02235	PF13186	Iron-sulfur cluster-binding domain
BJL90_RS02235	PF04055	Radical SAM superfamily
BJL90_RS02250	PF01522	Polysaccharide deacetylase
BJL90_RS02255	PF03705	CheR methyltransferase, all-alpha domain
BJL90_RS02255	PF01739	CheR methyltransferase, SAM binding domain
BJL90_RS02260	PF09984	Uncharacterised signal transduction histidine kinase domain (DUF2222)
BJL90_RS02260	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02260	PF00672	HAMP domain
BJL90_RS02260	PF01627	Hpt domain
BJL90_RS02260	PF00072	Response regulator receiver domain
BJL90_RS02260	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS02265	PF00989	PAS fold
BJL90_RS02265	PF00672	HAMP domain
BJL90_RS02265	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02265	PF18698	Histidine kinase sensor domain
BJL90_RS02265	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS02275	PF17203	Single cache domain 3
BJL90_RS02275	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02275	PF00989	PAS fold
BJL90_RS02275	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BJL90_RS02280	PF04703	FaeA-like protein
BJL90_RS02280	PF00072	Response regulator receiver domain
BJL90_RS02285	PF14537	Cytochrome c3
BJL90_RS02285	PF00890	FAD binding domain
BJL90_RS02290	PF13180	PDZ domain
BJL90_RS02300	PF02915	Rubrerythrin
BJL90_RS02305	PF02903	Alpha amylase, N-terminal ig-like domain
BJL90_RS02305	PF00128	Alpha amylase, catalytic domain
BJL90_RS02310	PF00343	Carbohydrate phosphorylase
BJL90_RS02315	PF00534	Glycosyl transferases group 1
BJL90_RS02315	PF08323	Starch synthase catalytic domain
BJL90_RS02320	PF00483	Nucleotidyl transferase
BJL90_RS02325	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS02325	PF00483	Nucleotidyl transferase
BJL90_RS02330	PF00128	Alpha amylase, catalytic domain
BJL90_RS02330	PF02806	Alpha amylase, C-terminal all-beta domain
BJL90_RS02330	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
BJL90_RS02340	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS02345	PF05504	Spore germination B3/ GerAC like, C-terminal 
BJL90_RS02355	PF03845	Spore germination protein
BJL90_RS02360	PF02446	4-alpha-glucanotransferase
BJL90_RS02365	PF08281	Sigma-70, region 4
BJL90_RS02365	PF04542	Sigma-70 region 2 
BJL90_RS02390	PF14815	NUDIX domain
BJL90_RS02390	PF00730	HhH-GPD superfamily base excision DNA repair protein
BJL90_RS02390	PF00633	Helix-hairpin-helix motif
BJL90_RS02395	PF03167	Uracil DNA glycosylase superfamily
BJL90_RS02400	PF02834	LigT like Phosphoesterase
BJL90_RS02415	PF12791	Anti-sigma factor N-terminus
BJL90_RS02415	PF05270	Alpha-L-arabinofuranosidase B (ABFB) domain
BJL90_RS02420	PF04542	Sigma-70 region 2 
BJL90_RS02425	PF00999	Sodium/hydrogen exchanger family
BJL90_RS02435	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS02435	PF02743	Cache domain
BJL90_RS02435	PF00672	HAMP domain
BJL90_RS02450	PF00999	Sodium/hydrogen exchanger family
BJL90_RS02475	PF04073	Aminoacyl-tRNA editing domain
BJL90_RS02480	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS02480	PF00258	Flavodoxin
BJL90_RS02480	PF00301	Rubredoxin
BJL90_RS02485	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS02485	PF00005	ABC transporter
BJL90_RS02490	PF00005	ABC transporter
BJL90_RS02490	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS02495	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS02500	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS02505	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS02510	PF01554	MatE
BJL90_RS02520	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02525	PF00072	Response regulator receiver domain
BJL90_RS02525	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS02530	PF03616	Sodium/glutamate symporter
BJL90_RS02535	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase 
BJL90_RS02540	PF03802	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
BJL90_RS02545	PF08218	Citrate lyase ligase C-terminal domain
BJL90_RS02550	PF04223	Citrate lyase, alpha subunit (CitF)
BJL90_RS02555	PF03328	HpcH/HpaI aldolase/citrate lyase family
BJL90_RS02560	PF06857	Malonate decarboxylase delta subunit (MdcD)
BJL90_RS02565	PF05681	Fumarate hydratase (Fumerase)
BJL90_RS02565	PF05683	Fumarase C-terminus
BJL90_RS02575	PF05034	Methylaspartate ammonia-lyase N-terminus
BJL90_RS02575	PF07476	Methylaspartate ammonia-lyase C-terminus
BJL90_RS02580	PF06368	Methylaspartate mutase E chain (MutE)
BJL90_RS02585	PF13941	MutL protein
BJL90_RS02590	PF02310	B12 binding domain
BJL90_RS02605	PF02310	B12 binding domain
BJL90_RS02605	PF02607	B12 binding domain
BJL90_RS02610	PF07683	Cobalamin synthesis protein cobW C-terminal domain
BJL90_RS02610	PF02492	CobW/HypB/UreG, nucleotide-binding domain
BJL90_RS02620	PF00809	Pterin binding enzyme
BJL90_RS02625	PF02310	B12 binding domain
BJL90_RS02625	PF02607	B12 binding domain
BJL90_RS02630	PF10114	Sensory domain found in PocR
BJL90_RS02630	PF12833	Helix-turn-helix domain
BJL90_RS02635	PF00072	Response regulator receiver domain
BJL90_RS02635	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS02640	PF01627	Hpt domain
BJL90_RS02640	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02640	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS02640	PF00072	Response regulator receiver domain
BJL90_RS02640	PF09984	Uncharacterised signal transduction histidine kinase domain (DUF2222)
BJL90_RS02640	PF00672	HAMP domain
BJL90_RS02645	PF00072	Response regulator receiver domain
BJL90_RS02645	PF01339	CheB methylesterase
BJL90_RS02650	PF01739	CheR methyltransferase, SAM binding domain
BJL90_RS02650	PF03705	CheR methyltransferase, all-alpha domain
BJL90_RS02655	PF12729	Four helix bundle sensory module for signal transduction
BJL90_RS02655	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS02655	PF00672	HAMP domain
BJL90_RS02660	PF01584	CheW-like domain
BJL90_RS02665	PF01627	Hpt domain
BJL90_RS02665	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02665	PF02895	Signal transducing histidine kinase, homodimeric domain
BJL90_RS02665	PF01584	CheW-like domain
BJL90_RS02665	PF07194	P2 response regulator binding domain
BJL90_RS02670	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS02675	PF00085	Thioredoxin
BJL90_RS02685	PF00403	Heavy-metal-associated domain
BJL90_RS02695	PF02743	Cache domain
BJL90_RS02695	PF00672	HAMP domain
BJL90_RS02695	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS02705	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS02710	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS02715	PF00005	ABC transporter
BJL90_RS02720	PF02608	ABC transporter substrate-binding protein PnrA-like
BJL90_RS02725	PF00266	Aminotransferase class-V
BJL90_RS02730	PF00155	Aminotransferase class I and II
BJL90_RS02735	PF02548	Ketopantoate hydroxymethyltransferase
BJL90_RS02740	PF02548	Ketopantoate hydroxymethyltransferase
BJL90_RS02745	PF09339	IclR helix-turn-helix domain
BJL90_RS02745	PF01614	Bacterial transcriptional regulator
BJL90_RS02750	PF00920	Dehydratase family
BJL90_RS02755	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS02755	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS02765	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS02780	PF01022	Bacterial regulatory protein, arsR family
BJL90_RS02785	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS02790	PF03551	Transcriptional regulator PadR-like family
BJL90_RS02795	PF00005	ABC transporter
BJL90_RS02795	PF08402	TOBE domain
BJL90_RS02800	PF03649	Uncharacterised protein family (UPF0014)
BJL90_RS02805	PF06580	Histidine kinase
BJL90_RS02805	PF07694	5TMR of 5TMR-LYT
BJL90_RS02805	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS02810	PF04397	LytTr DNA-binding domain
BJL90_RS02810	PF00072	Response regulator receiver domain
BJL90_RS02815	PF02554	Carbon starvation protein CstA
BJL90_RS02820	PF00149	Calcineurin-like phosphoesterase
BJL90_RS02825	PF12464	Maltose acetyltransferase 
BJL90_RS02825	PF14602	Hexapeptide repeat of succinyl-transferase
BJL90_RS02835	PF03050	Transposase IS66 family 
BJL90_RS02835	PF13817	IS66 C-terminal element
BJL90_RS02835	PF13007	Transposase C of IS166 homeodomain
BJL90_RS02835	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS02875	PF15978	Tn7-like transposition protein D
BJL90_RS02875	PF06527	TniQ
BJL90_RS02880	PF13401	AAA domain
BJL90_RS02880	PF11426	Tn7 transposition regulator TnsC
BJL90_RS02885	PF00665	Integrase core domain
BJL90_RS02890	PF08722	TnsA endonuclease N terminal
BJL90_RS02890	PF08721	TnsA endonuclease C terminal
BJL90_RS02895	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS02895	PF13007	Transposase C of IS166 homeodomain
BJL90_RS02895	PF13817	IS66 C-terminal element
BJL90_RS02895	PF03050	Transposase IS66 family 
BJL90_RS02910	PF00665	Integrase core domain
BJL90_RS02915	PF08722	TnsA endonuclease N terminal
BJL90_RS02915	PF08721	TnsA endonuclease C terminal
BJL90_RS02930	PF01555	DNA methylase
BJL90_RS02950	PF01380	SIS domain
BJL90_RS02955	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
BJL90_RS02955	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
BJL90_RS02955	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
BJL90_RS02955	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
BJL90_RS02960	PF02554	Carbon starvation protein CstA
BJL90_RS02960	PF13722	5TM C-terminal transporter carbon starvation CstA
BJL90_RS02985	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BJL90_RS02985	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BJL90_RS03000	PF00871	Acetokinase family
BJL90_RS03005	PF01515	Phosphate acetyl/butaryl transferase
BJL90_RS03010	PF00871	Acetokinase family
BJL90_RS03015	PF00158	Sigma-54 interaction domain
BJL90_RS03015	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS03015	PF00989	PAS fold
BJL90_RS03025	PF02457	DisA bacterial checkpoint controller nucleotide-binding
BJL90_RS03035	PF00764	Arginosuccinate synthase
BJL90_RS03040	PF00202	Aminotransferase class-III
BJL90_RS03045	PF00202	Aminotransferase class-III
BJL90_RS03415	PF00885	6,7-dimethyl-8-ribityllumazine synthase
BJL90_RS03420	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
BJL90_RS03420	PF00925	GTP cyclohydrolase II
BJL90_RS03425	PF00677	Lumazine binding domain
BJL90_RS03430	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BJL90_RS03430	PF01872	RibD C-terminal domain
BJL90_RS03435	PF02659	Putative manganese efflux pump
BJL90_RS03460	PF00578	AhpC/TSA family
BJL90_RS03465	PF00403	Heavy-metal-associated domain
BJL90_RS03470	PF01022	Bacterial regulatory protein, arsR family
BJL90_RS03475	PF08141	Small acid-soluble spore protein H family
BJL90_RS03480	PF00258	Flavodoxin
BJL90_RS03480	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS03485	PF01522	Polysaccharide deacetylase
BJL90_RS03495	PF04239	Protein of unknown function (DUF421)
BJL90_RS03500	PF01022	Bacterial regulatory protein, arsR family
BJL90_RS03505	PF07687	Peptidase dimerisation domain
BJL90_RS03505	PF01546	Peptidase family M20/M25/M40
BJL90_RS03510	PF17676	LD-carboxypeptidase C-terminal domain
BJL90_RS03510	PF02016	LD-carboxypeptidase N-terminal domain
BJL90_RS03515	PF07670	Nucleoside recognition
BJL90_RS03520	PF07670	Nucleoside recognition
BJL90_RS03525	PF13378	Enolase C-terminal domain-like
BJL90_RS03525	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
BJL90_RS03530	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
BJL90_RS03530	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
BJL90_RS03535	PF00158	Sigma-54 interaction domain
BJL90_RS03535	PF13426	PAS domain
BJL90_RS03535	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS03540	PF02673	Bacitracin resistance protein BacA
BJL90_RS03545	PF00733	Asparagine synthase
BJL90_RS03545	PF13537	Glutamine amidotransferase domain
BJL90_RS03550	PF00571	CBS domain
BJL90_RS03555	PF03734	L,D-transpeptidase catalytic domain
BJL90_RS03555	PF01476	LysM domain
BJL90_RS03570	PF13426	PAS domain
BJL90_RS03570	PF08448	PAS fold
BJL90_RS03570	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS03570	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS03570	PF00072	Response regulator receiver domain
BJL90_RS03575	PF13302	Acetyltransferase (GNAT) domain
BJL90_RS03590	PF00704	Glycosyl hydrolases family 18
BJL90_RS03590	PF01476	LysM domain
BJL90_RS03595	PF00672	HAMP domain
BJL90_RS03595	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS03595	PF18698	Histidine kinase sensor domain
BJL90_RS03595	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS03595	PF00989	PAS fold
BJL90_RS03600	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS03605	PF02675	S-adenosylmethionine decarboxylase 
BJL90_RS03610	PF03063	Prismane/CO dehydrogenase family
BJL90_RS03615	PF04748	Divergent polysaccharide deacetylase
BJL90_RS03625	PF01520	N-acetylmuramoyl-L-alanine amidase
BJL90_RS03640	PF00380	Ribosomal protein S9/S16
BJL90_RS03645	PF00572	Ribosomal protein L13
BJL90_RS03650	PF01416	tRNA pseudouridine synthase
BJL90_RS03655	PF02361	Cobalt transport protein
BJL90_RS03660	PF00005	ABC transporter
BJL90_RS03665	PF00005	ABC transporter
BJL90_RS03670	PF01196	Ribosomal protein L17
BJL90_RS03675	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
BJL90_RS03675	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
BJL90_RS03675	PF01000	RNA polymerase Rpb3/RpoA insert domain
BJL90_RS03680	PF00163	Ribosomal protein S4/S9 N-terminal domain
BJL90_RS03680	PF01479	S4 domain
BJL90_RS03685	PF00411	Ribosomal protein S11
BJL90_RS03690	PF00416	Ribosomal protein S13/S18
BJL90_RS03695	PF00444	Ribosomal protein L36
BJL90_RS03700	PF01176	Translation initiation factor 1A / IF-1
BJL90_RS03710	PF00557	Metallopeptidase family M24
BJL90_RS03715	PF05191	Adenylate kinase, active site lid
BJL90_RS03720	PF00344	SecY translocase
BJL90_RS03725	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
BJL90_RS03730	PF00327	Ribosomal protein L30p/L7e
BJL90_RS03735	PF03719	Ribosomal protein S5, C-terminal domain
BJL90_RS03735	PF00333	Ribosomal protein S5, N-terminal domain
BJL90_RS03740	PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
BJL90_RS03745	PF00347	Ribosomal protein L6
BJL90_RS03750	PF00410	Ribosomal protein S8
BJL90_RS03755	PF00253	Ribosomal protein S14p/S29e
BJL90_RS03760	PF00673	ribosomal L5P family C-terminus
BJL90_RS03760	PF00281	Ribosomal protein L5
BJL90_RS03765	PF17136	Ribosomal proteins 50S L24/mitochondrial 39S L24
BJL90_RS03765	PF00467	KOW motif
BJL90_RS03770	PF00238	Ribosomal protein L14p/L23e
BJL90_RS03775	PF00366	Ribosomal protein S17
BJL90_RS03780	PF00831	Ribosomal L29 protein
BJL90_RS03785	PF00252	Ribosomal protein L16p/L10e
BJL90_RS03790	PF00189	Ribosomal protein S3, C-terminal domain
BJL90_RS03790	PF07650	KH domain
BJL90_RS03795	PF00237	Ribosomal protein L22p/L17e
BJL90_RS03800	PF00203	Ribosomal protein S19
BJL90_RS03805	PF00181	Ribosomal Proteins L2, RNA binding domain
BJL90_RS03805	PF03947	Ribosomal Proteins L2, C-terminal domain
BJL90_RS03810	PF00276	Ribosomal protein L23
BJL90_RS03815	PF00573	Ribosomal protein L4/L1 family
BJL90_RS03820	PF00297	Ribosomal protein L3
BJL90_RS03825	PF00338	Ribosomal protein S10p/S20e
BJL90_RS03830	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS03830	PF03144	Elongation factor Tu domain 2
BJL90_RS03830	PF03143	Elongation factor Tu C-terminal domain
BJL90_RS03835	PF14492	Elongation Factor G, domain II
BJL90_RS03835	PF03764	Elongation factor G, domain IV
BJL90_RS03835	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS03835	PF03144	Elongation factor Tu domain 2
BJL90_RS03835	PF00679	Elongation factor G C-terminus
BJL90_RS03840	PF00177	Ribosomal protein S7p/S5e
BJL90_RS03845	PF00164	Ribosomal protein S12/S23
BJL90_RS03850	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
BJL90_RS03855	PF05000	RNA polymerase Rpb1, domain 4
BJL90_RS03855	PF04997	RNA polymerase Rpb1, domain 1
BJL90_RS03855	PF00623	RNA polymerase Rpb1, domain 2
BJL90_RS03855	PF04983	RNA polymerase Rpb1, domain 3
BJL90_RS03855	PF04998	RNA polymerase Rpb1, domain 5
BJL90_RS03860	PF00562	RNA polymerase Rpb2, domain 6
BJL90_RS03860	PF04560	RNA polymerase Rpb2, domain 7
BJL90_RS03860	PF04565	RNA polymerase Rpb2, domain 3
BJL90_RS03860	PF04561	RNA polymerase Rpb2, domain 2
BJL90_RS03860	PF04563	RNA polymerase beta subunit
BJL90_RS03860	PF10385	RNA polymerase beta subunit external 1 domain
BJL90_RS03865	PF16320	Ribosomal protein L7/L12 dimerisation domain
BJL90_RS03865	PF00542	Ribosomal protein L7/L12 C-terminal domain
BJL90_RS03870	PF00466	Ribosomal protein L10
BJL90_RS03875	PF00687	Ribosomal protein L1p/L10e family
BJL90_RS03880	PF00298	Ribosomal protein L11, RNA binding domain
BJL90_RS03880	PF03946	Ribosomal protein L11, N-terminal domain
BJL90_RS03885	PF02357	Transcription termination factor nusG
BJL90_RS03885	PF00467	KOW motif
BJL90_RS03895	PF00471	Ribosomal protein L33
BJL90_RS03900	PF03143	Elongation factor Tu C-terminal domain
BJL90_RS03900	PF03144	Elongation factor Tu domain 2
BJL90_RS03900	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS03905	PF08281	Sigma-70, region 4
BJL90_RS03905	PF04542	Sigma-70 region 2 
BJL90_RS03910	PF05991	YacP-like NYN domain
BJL90_RS03915	PF00588	SpoU rRNA Methylase family
BJL90_RS03915	PF08032	RNA 2'-O ribose methyltransferase substrate binding
BJL90_RS03920	PF02511	Thymidylate synthase complementing protein
BJL90_RS03930	PF00636	Ribonuclease III domain
BJL90_RS03935	PF09190	DALR domain
BJL90_RS03935	PF01406	tRNA synthetases class I (C) catalytic domain
BJL90_RS03940	PF06426	Serine acetyltransferase, N-terminal 
BJL90_RS03940	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS03945	PF00749	tRNA synthetases class I (E and Q), catalytic domain
BJL90_RS03950	PF06207	Protein of unknown function (DUF1002)
BJL90_RS03955	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BJL90_RS03955	PF03129	Anticodon binding domain
BJL90_RS03955	PF09180	Prolyl-tRNA synthetase, C-terminal
BJL90_RS03960	PF02542	YgbB family
BJL90_RS03965	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
BJL90_RS03975	PF02559	CarD-like/TRCF domain
BJL90_RS03985	PF02457	DisA bacterial checkpoint controller nucleotide-binding
BJL90_RS03985	PF10635	DisA bacterial checkpoint controller linker region 
BJL90_RS03990	PF18073	Rubredoxin metal binding domain
BJL90_RS03995	PF10431	C-terminal, D2-small domain, of ClpB protein 
BJL90_RS03995	PF17871	AAA lid domain
BJL90_RS03995	PF02861	Clp amino terminal domain, pathogenicity island component
BJL90_RS03995	PF07724	AAA domain (Cdc48 subfamily)
BJL90_RS03995	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS04000	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
BJL90_RS04005	PF02151	UvrB/uvrC motif
BJL90_RS04010	PF05848	CtsR N-terminal HTH domain
BJL90_RS04010	PF17727	CtsR C-terminal dimerization domain
BJL90_RS04015	PF03144	Elongation factor Tu domain 2
BJL90_RS04015	PF00679	Elongation factor G C-terminus
BJL90_RS04015	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS04015	PF14492	Elongation Factor G, domain II
BJL90_RS04015	PF03764	Elongation factor G, domain IV
BJL90_RS04020	PF00080	Copper/zinc superoxide dismutase (SODC)
BJL90_RS04035	PF00155	Aminotransferase class I and II
BJL90_RS04035	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS04040	PF03063	Prismane/CO dehydrogenase family
BJL90_RS04045	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS04045	PF01434	Peptidase family M41
BJL90_RS04045	PF17862	AAA+ lid domain
BJL90_RS04050	PF08471	Class II vitamin B12-dependent ribonucleotide reductase
BJL90_RS04050	PF02867	Ribonucleotide reductase, barrel domain
BJL90_RS04075	PF01336	OB-fold nucleic acid binding domain
BJL90_RS04075	PF00152	tRNA synthetases class II (D, K and N) 
BJL90_RS04080	PF03449	Transcription elongation factor, N-terminal
BJL90_RS04080	PF01272	Transcription elongation factor, GreA/GreB, C-term
BJL90_RS04090	PF01207	Dihydrouridine synthase (Dus)
BJL90_RS04095	PF03309	Type III pantothenate kinase
BJL90_RS04100	PF12822	ECF transporter, substrate-specific component
BJL90_RS04105	PF02237	Biotin protein ligase C terminal domain
BJL90_RS04105	PF08279	HTH domain
BJL90_RS04105	PF03099	Biotin/lipoate A/B protein ligase family
BJL90_RS04110	PF03977	Na+-transporting oxaloacetate decarboxylase beta subunit
BJL90_RS04115	PF00364	Biotin-requiring enzyme
BJL90_RS04115	PF02436	Conserved carboxylase domain
BJL90_RS04115	PF00682	HMGL-like
BJL90_RS04125	PF01039	Carboxyl transferase domain
BJL90_RS04130	PF01434	Peptidase family M41
BJL90_RS04130	PF17862	AAA+ lid domain
BJL90_RS04130	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS04135	PF11734	TilS substrate C-terminal domain
BJL90_RS04135	PF01171	PP-loop family
BJL90_RS04140	PF03793	PASTA domain
BJL90_RS04140	PF00069	Protein kinase domain
BJL90_RS04145	PF00092	von Willebrand factor type A domain
BJL90_RS04150	PF04055	Radical SAM superfamily
BJL90_RS04150	PF12544	Lysine-2,3-aminomutase 
BJL90_RS04155	PF01170	Putative RNA methylase family UPF0020
BJL90_RS04155	PF02926	THUMP domain
BJL90_RS04170	PF11871	Domain of unknown function (DUF3391)
BJL90_RS04170	PF01966	HD domain
BJL90_RS04180	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS04190	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS04195	PF03576	Peptidase family S58 
BJL90_RS04200	PF01966	HD domain
BJL90_RS04200	PF11871	Domain of unknown function (DUF3391)
BJL90_RS04210	PF07478	D-ala D-ala ligase C-terminus
BJL90_RS04210	PF01820	D-ala D-ala ligase N-terminus
BJL90_RS04215	PF09551	Stage II sporulation protein R (spore_II_R)
BJL90_RS04220	PF03845	Spore germination protein
BJL90_RS04225	PF03845	Spore germination protein
BJL90_RS04235	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS04250	PF07729	FCD domain
BJL90_RS04250	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS04255	PF00288	GHMP kinases N terminal domain
BJL90_RS04255	PF08544	GHMP kinases C terminal 
BJL90_RS04270	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BJL90_RS04270	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BJL90_RS04280	PF08486	Stage II sporulation protein
BJL90_RS04295	PF03553	Na+/H+ antiporter family
BJL90_RS04300	PF01794	Ferric reductase like transmembrane component
BJL90_RS04300	PF04205	FMN-binding domain
BJL90_RS04305	PF01895	PhoU domain
BJL90_RS04310	PF00005	ABC transporter
BJL90_RS04315	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS04320	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS04325	PF12849	PBP superfamily domain
BJL90_RS04330	PF00672	HAMP domain
BJL90_RS04330	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS04330	PF02743	Cache domain
BJL90_RS04335	PF02833	DHHA2 domain
BJL90_RS04335	PF07085	DRTGG domain
BJL90_RS04335	PF00571	CBS domain
BJL90_RS04335	PF01368	DHH family
BJL90_RS04345	PF17179	4Fe-4S dicluster domain
BJL90_RS04350	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
BJL90_RS04350	PF00175	Oxidoreductase NAD-binding domain 
BJL90_RS04360	PF12706	Beta-lactamase superfamily domain
BJL90_RS04370	PF01594	AI-2E family transporter
BJL90_RS04375	PF04239	Protein of unknown function (DUF421)
BJL90_RS04405	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS04405	PF00672	HAMP domain
BJL90_RS04405	PF02743	Cache domain
BJL90_RS04410	PF00288	GHMP kinases N terminal domain
BJL90_RS04415	PF00742	Homoserine dehydrogenase
BJL90_RS04415	PF01842	ACT domain
BJL90_RS04415	PF03447	Homoserine dehydrogenase, NAD binding domain
BJL90_RS04425	PF00209	Sodium:neurotransmitter symporter family
BJL90_RS04430	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS04430	PF13426	PAS domain
BJL90_RS04430	PF00158	Sigma-54 interaction domain
BJL90_RS04455	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS04455	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS04455	PF00384	Molybdopterin oxidoreductase
BJL90_RS04460	PF01565	FAD binding domain 
BJL90_RS04460	PF02913	FAD linked oxidases, C-terminal domain
BJL90_RS04465	PF01012	Electron transfer flavoprotein domain
BJL90_RS04465	PF00766	Electron transfer flavoprotein FAD-binding domain
BJL90_RS04470	PF01012	Electron transfer flavoprotein domain
BJL90_RS04475	PF09861	Lactate racemase N-terminal domain
BJL90_RS04480	PF04172	LrgB-like family 
BJL90_RS04485	PF03788	LrgA family
BJL90_RS04490	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BJL90_RS04490	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
BJL90_RS04490	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BJL90_RS04490	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS04490	PF10371	Domain of unknown function
BJL90_RS04495	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS04495	PF07729	FCD domain
BJL90_RS04510	PF00206	Lyase
BJL90_RS04510	PF14698	Argininosuccinate lyase C-terminal
BJL90_RS04515	PF01880	Desulfoferrodoxin
BJL90_RS04520	PF13091	PLD-like domain
BJL90_RS04520	PF13396	Phospholipase_D-nuclease N-terminal
BJL90_RS04530	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BJL90_RS04530	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS04530	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BJL90_RS04530	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
BJL90_RS04530	PF10371	Domain of unknown function
BJL90_RS04540	PF01370	NAD dependent epimerase/dehydratase family
BJL90_RS04550	PF01053	Cys/Met metabolism PLP-dependent enzyme
BJL90_RS04555	PF04204	Homoserine O-succinyltransferase 
BJL90_RS04565	PF00899	ThiF family
BJL90_RS04575	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
BJL90_RS04575	PF00749	tRNA synthetases class I (E and Q), catalytic domain
BJL90_RS04580	PF01266	FAD dependent oxidoreductase
BJL90_RS04580	PF00355	Rieske [2Fe-2S] domain
BJL90_RS04585	PF02581	Thiamine monophosphate synthase
BJL90_RS04590	PF01964	Radical SAM ThiC family
BJL90_RS04595	PF04055	Radical SAM superfamily
BJL90_RS04595	PF06968	Biotin and Thiamin Synthesis associated domain
BJL90_RS04600	PF05690	Thiazole biosynthesis protein ThiG
BJL90_RS04605	PF00899	ThiF family
BJL90_RS04605	PF00581	Rhodanese-like domain
BJL90_RS04620	PF05167	Uncharacterised ACR (DUF711)
BJL90_RS04625	PF17871	AAA lid domain
BJL90_RS04625	PF10431	C-terminal, D2-small domain, of ClpB protein 
BJL90_RS04625	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS04625	PF02861	Clp amino terminal domain, pathogenicity island component
BJL90_RS04625	PF07724	AAA domain (Cdc48 subfamily)
BJL90_RS04630	PF01063	Amino-transferase class IV
BJL90_RS04650	PF08666	SAF domain
BJL90_RS04650	PF04295	D-galactarate dehydratase / Altronate hydrolase, C terminus
BJL90_RS04660	PF00989	PAS fold
BJL90_RS04660	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS04660	PF00158	Sigma-54 interaction domain
BJL90_RS04665	PF12848	ABC transporter
BJL90_RS04665	PF00005	ABC transporter
BJL90_RS04670	PF00860	Permease family
BJL90_RS04680	PF02347	Glycine cleavage system P-protein
BJL90_RS04685	PF02347	Glycine cleavage system P-protein
BJL90_RS04690	PF01966	HD domain
BJL90_RS04715	PF00871	Acetokinase family
BJL90_RS04720	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BJL90_RS04720	PF03466	LysR substrate binding domain
BJL90_RS04730	PF00464	Serine hydroxymethyltransferase
BJL90_RS04740	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
BJL90_RS04740	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
BJL90_RS04745	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS04750	PF07687	Peptidase dimerisation domain
BJL90_RS04750	PF01546	Peptidase family M20/M25/M40
BJL90_RS04755	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS04760	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS04765	PF01321	Creatinase/Prolidase N-terminal domain
BJL90_RS04765	PF00557	Metallopeptidase family M24
BJL90_RS04770	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS04770	PF07729	FCD domain
BJL90_RS04775	PF03819	MazG nucleotide pyrophosphohydrolase domain
BJL90_RS04780	PF07486	Cell Wall Hydrolase
BJL90_RS04780	PF01471	Putative peptidoglycan binding domain
BJL90_RS04785	PF00005	ABC transporter
BJL90_RS04800	PF00920	Dehydratase family
BJL90_RS04805	PF07690	Major Facilitator Superfamily
BJL90_RS04810	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS04815	PF03372	Endonuclease/Exonuclease/phosphatase family
BJL90_RS04830	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
BJL90_RS04830	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BJL90_RS04835	PF00849	RNA pseudouridylate synthase
BJL90_RS04835	PF01479	S4 domain
BJL90_RS04840	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS04840	PF00183	Hsp90 protein
BJL90_RS04855	PF00892	EamA-like transporter family
BJL90_RS04860	PF08241	Methyltransferase domain
BJL90_RS04860	PF12697	Alpha/beta hydrolase family
BJL90_RS04870	PF04542	Sigma-70 region 2 
BJL90_RS04870	PF08281	Sigma-70, region 4
BJL90_RS04875	PF03812	2-keto-3-deoxygluconate permease
BJL90_RS04880	PF09861	Lactate racemase N-terminal domain
BJL90_RS04885	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
BJL90_RS04890	PF17042	Nucleotide-binding C-terminal domain
BJL90_RS04890	PF07005	Sugar-binding N-terminal domain
BJL90_RS04895	PF00209	Sodium:neurotransmitter symporter family
BJL90_RS04920	PF01554	MatE
BJL90_RS04935	PF02447	GntP family permease
BJL90_RS04940	PF00920	Dehydratase family
BJL90_RS04945	PF07729	FCD domain
BJL90_RS04945	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS04960	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS04960	PF00072	Response regulator receiver domain
BJL90_RS04960	PF00158	Sigma-54 interaction domain
BJL90_RS04965	PF06253	Trimethylamine methyltransferase (MTTB)
BJL90_RS04975	PF00474	Sodium:solute symporter family
BJL90_RS05010	PF00155	Aminotransferase class I and II
BJL90_RS05010	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS05020	PF01695	IstB-like ATP binding protein
BJL90_RS05030	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS05030	PF13817	IS66 C-terminal element
BJL90_RS05030	PF03050	Transposase IS66 family 
BJL90_RS05030	PF13007	Transposase C of IS166 homeodomain
BJL90_RS05060	PF02590	Predicted SPOUT methyltransferase
BJL90_RS05070	PF01569	PAP2 superfamily
BJL90_RS05080	PF13180	PDZ domain
BJL90_RS05085	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS05090	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BJL90_RS05110	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS05110	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS05110	PF00672	HAMP domain
BJL90_RS05110	PF13426	PAS domain
BJL90_RS05115	PF00072	Response regulator receiver domain
BJL90_RS05115	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS05125	PF00082	Subtilase family
BJL90_RS05130	PF01551	Peptidase family M23
BJL90_RS05130	PF08525	Opacity-associated protein A N-terminal motif
BJL90_RS05130	PF01476	LysM domain
BJL90_RS05135	PF01433	Peptidase family M1 domain
BJL90_RS05135	PF11838	ERAP1-like C-terminal domain
BJL90_RS05145	PF01695	IstB-like ATP binding protein
BJL90_RS05150	PF00005	ABC transporter
BJL90_RS05155	PF00005	ABC transporter
BJL90_RS05160	PF06463	Molybdenum Cofactor Synthesis C
BJL90_RS05160	PF04055	Radical SAM superfamily
BJL90_RS05170	PF00072	Response regulator receiver domain
BJL90_RS05170	PF04397	LytTr DNA-binding domain
BJL90_RS05175	PF04647	Accessory gene regulator B
BJL90_RS05180	PF01627	Hpt domain
BJL90_RS05180	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS05180	PF02895	Signal transducing histidine kinase, homodimeric domain
BJL90_RS05180	PF01584	CheW-like domain
BJL90_RS05180	PF07194	P2 response regulator binding domain
BJL90_RS05200	PF00709	Adenylosuccinate synthetase
BJL90_RS05215	PF03796	DnaB-like helicase C terminal domain
BJL90_RS05215	PF00772	DnaB-like helicase N terminal domain
BJL90_RS05220	PF03948	Ribosomal protein L9, C-terminal domain
BJL90_RS05220	PF01281	Ribosomal protein L9, N-terminal domain
BJL90_RS05260	PF00563	EAL domain
BJL90_RS05260	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS05260	PF03707	Bacterial signalling protein N terminal repeat
BJL90_RS05265	PF00589	Phage integrase family
BJL90_RS05290	PF13401	AAA domain
BJL90_RS05290	PF11426	Tn7 transposition regulator TnsC
BJL90_RS05295	PF00665	Integrase core domain
BJL90_RS05300	PF08721	TnsA endonuclease C terminal
BJL90_RS05300	PF08722	TnsA endonuclease N terminal
BJL90_RS05350	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS05350	PF00589	Phage integrase family
BJL90_RS05450	PF02132	RecR protein
BJL90_RS05450	PF13662	Toprim domain
BJL90_RS05455	PF02575	YbaB/EbfC DNA-binding family
BJL90_RS05460	PF12169	DNA polymerase III subunits gamma and tau domain III
BJL90_RS05480	PF06866	Protein of unknown function (DUF1256)
BJL90_RS05495	PF00266	Aminotransferase class-V
BJL90_RS05500	PF17762	HTH domain found in ParB protein
BJL90_RS05500	PF02195	ParB-like nuclease domain
BJL90_RS05505	PF13614	AAA domain
BJL90_RS05515	PF17762	HTH domain found in ParB protein
BJL90_RS05515	PF02195	ParB-like nuclease domain
BJL90_RS05520	PF02527	rRNA small subunit methyltransferase G
BJL90_RS05525	PF13932	GidA associated domain
BJL90_RS05525	PF01134	Glucose inhibited division protein A
BJL90_RS05530	PF01926	50S ribosome-binding GTPase
BJL90_RS05530	PF12631	MnmE helical domain
BJL90_RS05530	PF10396	GTP-binding protein TrmE N-terminus
BJL90_RS05535	PF01424	R3H domain
BJL90_RS05535	PF14804	Jag N-terminus
BJL90_RS05540	PF02096	60Kd inner membrane protein
BJL90_RS05545	PF01809	Putative membrane protein insertion efficiency factor
BJL90_RS05550	PF00825	Ribonuclease P
BJL90_RS05555	PF00468	Ribosomal protein L34
BJL90_RS05560	PF11638	DnaA N-terminal domain
BJL90_RS05560	PF08299	Bacterial dnaA protein helix-turn-helix
BJL90_RS05560	PF00308	Bacterial dnaA  protein
BJL90_RS05565	PF00712	DNA polymerase III beta subunit, N-terminal domain
BJL90_RS05565	PF02768	DNA polymerase III beta subunit, C-terminal domain
BJL90_RS05565	PF02767	DNA polymerase III beta subunit, central domain
BJL90_RS05575	PF02463	RecF/RecN/SMC N terminal domain
BJL90_RS05585	PF00204	DNA gyrase B
BJL90_RS05585	PF00986	DNA gyrase B subunit, carboxyl terminus
BJL90_RS05585	PF01751	Toprim domain
BJL90_RS05585	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS05590	PF00521	DNA gyrase/topoisomerase IV, subunit A
BJL90_RS05590	PF03989	DNA gyrase C-terminal domain, beta-propeller
BJL90_RS05595	PF01740	STAS domain
BJL90_RS05600	PF13581	Histidine kinase-like ATPase domain
BJL90_RS05605	PF04542	Sigma-70 region 2 
BJL90_RS05605	PF04545	Sigma-70, region 4
BJL90_RS05605	PF04539	Sigma-70 region 3
BJL90_RS05645	PF02829	3H domain
BJL90_RS05645	PF08279	HTH domain
BJL90_RS05650	PF02445	Quinolinate synthetase A protein
BJL90_RS05655	PF00890	FAD binding domain
BJL90_RS05660	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
BJL90_RS05660	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
BJL90_RS05670	PF03699	Uncharacterised protein family (UPF0182)
BJL90_RS05680	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BJL90_RS05680	PF02403	Seryl-tRNA synthetase N-terminal domain
BJL90_RS05690	PF14437	MafB19-like deaminase
BJL90_RS05705	PF01206	Sulfurtransferase TusA
BJL90_RS05715	PF00924	Mechanosensitive ion channel
BJL90_RS05725	PF01250	Ribosomal protein S6
BJL90_RS05730	PF00436	Single-strand binding protein family
BJL90_RS05735	PF01084	Ribosomal protein S18
BJL90_RS05750	PF01386	Ribosomal L25p family
BJL90_RS05750	PF14693	Ribosomal protein TL5, C-terminal domain
BJL90_RS05755	PF14693	Ribosomal protein TL5, C-terminal domain
BJL90_RS05755	PF01386	Ribosomal L25p family
BJL90_RS05785	PF02583	Metal-sensitive transcriptional repressor
BJL90_RS05795	PF02618	YceG-like family
BJL90_RS05800	PF00899	ThiF family
BJL90_RS05810	PF01903	CbiX
BJL90_RS05815	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
BJL90_RS05815	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
BJL90_RS05815	PF01488	Shikimate / quinate 5-dehydrogenase
BJL90_RS05820	PF10414	Sirohaem synthase dimerisation region
BJL90_RS05820	PF14824	Sirohaem biosynthesis protein central
BJL90_RS05820	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05825	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
BJL90_RS05825	PF03900	Porphobilinogen deaminase, C-terminal domain
BJL90_RS05830	PF02602	Uroporphyrinogen-III synthase HemD
BJL90_RS05830	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05835	PF00490	Delta-aminolevulinic acid dehydratase
BJL90_RS05840	PF00202	Aminotransferase class-III
BJL90_RS05845	PF07685	CobB/CobQ-like glutamine amidotransferase domain
BJL90_RS05845	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
BJL90_RS05860	PF00288	GHMP kinases N terminal domain
BJL90_RS05865	PF02570	Precorrin-8X methylmutase
BJL90_RS05870	PF01888	CbiD
BJL90_RS05875	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05880	PF05175	Methyltransferase small domain
BJL90_RS05885	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05890	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05895	PF11760	Cobalamin synthesis G N-terminal
BJL90_RS05895	PF11761	Cobalamin biosynthesis central region
BJL90_RS05895	PF01890	Cobalamin synthesis G C-terminus
BJL90_RS05900	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05920	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
BJL90_RS05920	PF01276	Orn/Lys/Arg decarboxylase, major domain
BJL90_RS05925	PF02223	Thymidylate kinase
BJL90_RS05930	PF06153	Cyclic-di-AMP receptor
BJL90_RS05935	PF12169	DNA polymerase III subunits gamma and tau domain III
BJL90_RS05940	PF04468	PSP1 C-terminal conserved region
BJL90_RS05950	PF05175	Methyltransferase small domain
BJL90_RS05955	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS05960	PF18277	AbrB C-terminal domain
BJL90_RS05960	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BJL90_RS05965	PF12627	Probable RNA and SrmB- binding site of polymerase A
BJL90_RS05965	PF13735	tRNA nucleotidyltransferase domain 2 putative
BJL90_RS05965	PF01743	Poly A polymerase head domain
BJL90_RS05970	PF17767	Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
BJL90_RS05970	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
BJL90_RS05970	PF17956	Nicotinate phosphoribosyltransferase C-terminal domain
BJL90_RS05975	PF07670	Nucleoside recognition
BJL90_RS05980	PF07670	Nucleoside recognition
BJL90_RS05985	PF09334	tRNA synthetases class I (M)
BJL90_RS05985	PF01588	Putative tRNA binding domain
BJL90_RS05985	PF08264	Anticodon-binding domain of tRNA
BJL90_RS05990	PF01026	TatD related DNase
BJL90_RS06000	PF06725	3D domain
BJL90_RS06000	PF03990	G5-linked-Ubiquitin-like domain
BJL90_RS06000	PF07501	G5 domain
BJL90_RS06005	PF13662	Toprim domain
BJL90_RS06005	PF13331	Domain of unknown function (DUF4093)
BJL90_RS06010	PF00398	Ribosomal RNA adenine dimethylase
BJL90_RS06020	PF01699	Sodium/calcium exchanger protein
BJL90_RS06025	PF17773	UPF0176 acylphosphatase like domain
BJL90_RS06025	PF12368	Rhodanase C-terminal
BJL90_RS06025	PF00581	Rhodanese-like domain
BJL90_RS06035	PF14034	Sporulation protein YtrH
BJL90_RS06045	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
BJL90_RS06045	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS06050	PF03806	AbgT putative transporter family
BJL90_RS06055	PF01546	Peptidase family M20/M25/M40
BJL90_RS06055	PF07687	Peptidase dimerisation domain
BJL90_RS06060	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
BJL90_RS06060	PF01276	Orn/Lys/Arg decarboxylase, major domain
BJL90_RS06070	PF08757	CotH kinase protein
BJL90_RS06075	PF08245	Mur ligase middle domain
BJL90_RS06075	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS06075	PF01225	Mur ligase family, catalytic domain
BJL90_RS06080	PF00156	Phosphoribosyl transferase domain
BJL90_RS06080	PF09182	Bacterial purine repressor, N-terminal
BJL90_RS06085	PF04026	SpoVG
BJL90_RS06090	PF14602	Hexapeptide repeat of succinyl-transferase
BJL90_RS06090	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS06090	PF12804	MobA-like NTP transferase domain
BJL90_RS06095	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
BJL90_RS06095	PF14572	Phosphoribosyl synthetase-associated domain
BJL90_RS06100	PF01195	Peptidyl-tRNA hydrolase
BJL90_RS06110	PF02559	CarD-like/TRCF domain
BJL90_RS06110	PF00270	DEAD/DEAH box helicase
BJL90_RS06110	PF00271	Helicase conserved C-terminal domain
BJL90_RS06110	PF03461	TRCF domain
BJL90_RS06110	PF17757	UvrB interaction domain
BJL90_RS06120	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BJL90_RS06120	PF15714	Stage V sporulation protein T C-terminal, transcription factor
BJL90_RS06125	PF01943	Polysaccharide biosynthesis protein
BJL90_RS06125	PF14667	Polysaccharide biosynthesis C-terminal domain
BJL90_RS06130	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
BJL90_RS06130	PF03819	MazG nucleotide pyrophosphohydrolase domain
BJL90_RS06135	PF00216	Bacterial DNA-binding protein
BJL90_RS06140	PF01479	S4 domain
BJL90_RS06145	PF08486	Stage II sporulation protein
BJL90_RS06150	PF07873	YabP family
BJL90_RS06165	PF00575	S1 RNA binding domain
BJL90_RS06170	PF02541	Ppx/GppA phosphatase family
BJL90_RS06175	PF07228	Stage II sporulation protein E (SpoIIE)
BJL90_RS06205	PF06418	CTP synthase N-terminus
BJL90_RS06205	PF00117	Glutamine amidotransferase class-I
BJL90_RS06240	PF00483	Nucleotidyl transferase
BJL90_RS06245	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
BJL90_RS06250	PF16363	GDP-mannose 4,6 dehydratase
BJL90_RS06255	PF01061	ABC-2 type transporter
BJL90_RS06260	PF14524	Wzt C-terminal domain
BJL90_RS06260	PF00005	ABC transporter
BJL90_RS06265	PF00535	Glycosyl transferase family 2
BJL90_RS06275	PF00535	Glycosyl transferase family 2
BJL90_RS06275	PF18674	TarS beta-glycosyltransferase C-terminal domain 1
BJL90_RS06280	PF00884	Sulfatase
BJL90_RS06285	PF00781	Diacylglycerol kinase catalytic domain
BJL90_RS06295	PF02397	Bacterial sugar transferase
BJL90_RS06300	PF04321	RmlD substrate binding domain
BJL90_RS06305	PF00963	Cohesin domain
BJL90_RS06305	PF00395	S-layer homology domain
BJL90_RS06310	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
BJL90_RS06315	PF00873	AcrB/AcrD/AcrF family
BJL90_RS06325	PF00483	Nucleotidyl transferase
BJL90_RS06335	PF00535	Glycosyl transferase family 2
BJL90_RS06365	PF13393	Histidyl-tRNA synthetase
BJL90_RS06370	PF01634	ATP phosphoribosyltransferase
BJL90_RS06375	PF00815	Histidinol dehydrogenase
BJL90_RS06380	PF00155	Aminotransferase class I and II
BJL90_RS06385	PF00475	Imidazoleglycerol-phosphate dehydratase
BJL90_RS06390	PF00117	Glutamine amidotransferase class-I
BJL90_RS06395	PF00977	Histidine biosynthesis protein
BJL90_RS06400	PF00977	Histidine biosynthesis protein
BJL90_RS06405	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
BJL90_RS06405	PF01502	Phosphoribosyl-AMP cyclohydrolase
BJL90_RS06410	PF00209	Sodium:neurotransmitter symporter family
BJL90_RS06415	PF00923	Transaldolase/Fructose-6-phosphate aldolase
BJL90_RS06420	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
BJL90_RS06425	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
BJL90_RS06430	PF07497	Rho termination factor, RNA-binding domain
BJL90_RS06430	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BJL90_RS06430	PF07498	Rho termination factor, N-terminal domain
BJL90_RS06435	PF01197	Ribosomal protein L31
BJL90_RS06440	PF00265	Thymidine kinase
BJL90_RS06450	PF07136	Protein of unknown function (DUF1385)
BJL90_RS06455	PF05175	Methyltransferase small domain
BJL90_RS06455	PF17827	PrmC N-terminal domain
BJL90_RS06460	PF00472	RF-1 domain
BJL90_RS06460	PF03462	PCRF domain
BJL90_RS06465	PF02535	ZIP Zinc transporter
BJL90_RS06470	PF16697	Inner membrane component of T3SS, cytoplasmic domain
BJL90_RS06475	PF01098	Cell cycle protein
BJL90_RS06480	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS06480	PF03717	Penicillin-binding Protein dimerisation domain
BJL90_RS06480	PF05223	NTF2-like N-terminal transpeptidase domain
BJL90_RS06485	PF03481	Putative GTP-binding controlling metal-binding
BJL90_RS06485	PF01300	Telomere recombination
BJL90_RS06490	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BJL90_RS06495	PF02502	Ribose/Galactose Isomerase
BJL90_RS06505	PF14437	MafB19-like deaminase
BJL90_RS06510	PF00953	Glycosyl transferase family 4
BJL90_RS06515	PF02350	UDP-N-acetylglucosamine 2-epimerase
BJL90_RS06530	PF00119	ATP synthase A chain
BJL90_RS06535	PF00137	ATP synthase subunit C
BJL90_RS06540	PF00137	ATP synthase subunit C
BJL90_RS06545	PF00430	ATP synthase B/B' CF(0)
BJL90_RS06550	PF00213	ATP synthase delta (OSCP) subunit
BJL90_RS06555	PF00306	ATP synthase alpha/beta chain, C terminal domain
BJL90_RS06555	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BJL90_RS06555	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BJL90_RS06560	PF00231	ATP synthase
BJL90_RS06565	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BJL90_RS06565	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BJL90_RS06570	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
BJL90_RS06570	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
BJL90_RS06590	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BJL90_RS06595	PF08486	Stage II sporulation protein
BJL90_RS06605	PF12116	Stage III sporulation protein D
BJL90_RS06615	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BJL90_RS06615	PF00460	Flagella basal body rod protein
BJL90_RS06615	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BJL90_RS06615	PF00460	Flagella basal body rod protein
BJL90_RS06620	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BJL90_RS06620	PF00460	Flagella basal body rod protein
BJL90_RS06630	PF07977	FabA-like domain
BJL90_RS06640	PF13807	G-rich domain on putative tyrosine kinase
BJL90_RS06640	PF02706	Chain length determinant protein
BJL90_RS06645	PF13614	AAA domain
BJL90_RS06655	PF02719	Polysaccharide biosynthesis protein
BJL90_RS06660	PF02397	Bacterial sugar transferase
BJL90_RS06670	PF00534	Glycosyl transferases group 1
BJL90_RS06670	PF13439	Glycosyltransferase Family 4
BJL90_RS06675	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
BJL90_RS06675	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
BJL90_RS06675	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
BJL90_RS06690	PF00534	Glycosyl transferases group 1
BJL90_RS06710	PF01370	NAD dependent epimerase/dehydratase family
BJL90_RS06715	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
BJL90_RS06715	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
BJL90_RS06715	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
BJL90_RS06725	PF00483	Nucleotidyl transferase
BJL90_RS06750	PF04754	Putative transposase, YhgA-like
BJL90_RS06780	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
BJL90_RS06805	PF00395	S-layer homology domain
BJL90_RS06810	PF00395	S-layer homology domain
BJL90_RS06810	PF00963	Cohesin domain
BJL90_RS06815	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
BJL90_RS06815	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
BJL90_RS06815	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
BJL90_RS06815	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
BJL90_RS06820	PF00072	Response regulator receiver domain
BJL90_RS06820	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS06825	PF00989	PAS fold
BJL90_RS06825	PF16736	Single Cache-like 
BJL90_RS06825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS06825	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS06845	PF00438	S-adenosylmethionine synthetase, N-terminal domain
BJL90_RS06845	PF02773	S-adenosylmethionine synthetase, C-terminal domain
BJL90_RS06845	PF02772	S-adenosylmethionine synthetase, central domain
BJL90_RS06860	PF14490	Helix-hairpin-helix containing domain
BJL90_RS06860	PF13538	UvrD-like helicase C-terminal domain
BJL90_RS06860	PF18335	ATP-dependent RecD-like DNA helicase SH3 domain
BJL90_RS06865	PF00156	Phosphoribosyl transferase domain
BJL90_RS06885	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BJL90_RS06885	PF00460	Flagella basal body rod protein
BJL90_RS06890	PF00700	Bacterial flagellin C-terminal helical region
BJL90_RS06890	PF00669	Bacterial flagellin N-terminal helical region
BJL90_RS06895	PF02623	FliW protein
BJL90_RS06900	PF02599	Global regulator protein family
BJL90_RS06905	PF00669	Bacterial flagellin N-terminal helical region
BJL90_RS06905	PF00700	Bacterial flagellin C-terminal helical region
BJL90_RS06915	PF00483	Nucleotidyl transferase
BJL90_RS06920	PF16363	GDP-mannose 4,6 dehydratase
BJL90_RS06925	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
BJL90_RS06940	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BJL90_RS06940	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
BJL90_RS06960	PF13193	AMP-binding enzyme C-terminal domain
BJL90_RS06960	PF00501	AMP-binding enzyme
BJL90_RS06965	PF01648	4'-phosphopantetheinyl transferase superfamily
BJL90_RS06970	PF02350	UDP-N-acetylglucosamine 2-epimerase
BJL90_RS06975	PF03102	NeuB family
BJL90_RS06975	PF08666	SAF domain
BJL90_RS06980	PF02348	Cytidylyltransferase
BJL90_RS06980	PF13472	GDSL-like Lipase/Acylhydrolase family
BJL90_RS06985	PF00535	Glycosyl transferase family 2
BJL90_RS06990	PF01370	NAD dependent epimerase/dehydratase family
BJL90_RS06995	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
BJL90_RS07005	PF02719	Polysaccharide biosynthesis protein
BJL90_RS07010	PF02348	Cytidylyltransferase
BJL90_RS07025	PF03102	NeuB family
BJL90_RS07025	PF08666	SAF domain
BJL90_RS07045	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
BJL90_RS07080	PF01618	MotA/TolQ/ExbB proton channel family
BJL90_RS07085	PF13677	Membrane MotB of proton-channel complex MotA/MotB 
BJL90_RS07085	PF00691	OmpA family
BJL90_RS07095	PF18267	Rubredoxin NAD+ reductase C-terminal domain
BJL90_RS07095	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS07095	PF04324	BFD-like [2Fe-2S] binding domain
BJL90_RS07095	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
BJL90_RS07095	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
BJL90_RS07110	PF02541	Ppx/GppA phosphatase family
BJL90_RS07115	PF13089	Polyphosphate kinase N-terminal domain
BJL90_RS07115	PF13090	Polyphosphate kinase C-terminal domain 2
BJL90_RS07115	PF17941	Polyphosphate kinase C-terminal domain 1
BJL90_RS07115	PF02503	Polyphosphate kinase middle domain
BJL90_RS07125	PF06580	Histidine kinase
BJL90_RS07125	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS07125	PF00672	HAMP domain
BJL90_RS07125	PF02743	Cache domain
BJL90_RS07130	PF01497	Periplasmic binding protein
BJL90_RS07130	PF12833	Helix-turn-helix domain
BJL90_RS07135	PF00920	Dehydratase family
BJL90_RS07140	PF13458	Periplasmic binding protein
BJL90_RS07145	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS07150	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS07150	PF11862	Domain of unknown function (DUF3382)
BJL90_RS07155	PF12399	Branched-chain amino acid ATP-binding cassette transporter
BJL90_RS07155	PF00005	ABC transporter
BJL90_RS07160	PF00005	ABC transporter
BJL90_RS07165	PF01063	Amino-transferase class IV
BJL90_RS07180	PF03646	FlaG protein
BJL90_RS07185	PF07195	Flagellar hook-associated protein 2 C-terminus
BJL90_RS07185	PF02465	Flagellar hook-associated protein 2 N-terminus
BJL90_RS07185	PF07196	Flagellin hook IN motif
BJL90_RS07190	PF02561	Flagellar protein FliS
BJL90_RS07200	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
BJL90_RS07200	PF16321	Sigma 54 modulation/S30EA ribosomal protein C terminus
BJL90_RS07210	PF07516	SecA Wing and Scaffold domain
BJL90_RS07210	PF01043	SecA preprotein cross-linking domain
BJL90_RS07210	PF07517	SecA DEAD-like domain
BJL90_RS07210	PF02810	SEC-C motif
BJL90_RS07215	PF03462	PCRF domain
BJL90_RS07215	PF00472	RF-1 domain
BJL90_RS07235	PF00669	Bacterial flagellin N-terminal helical region
BJL90_RS07235	PF00700	Bacterial flagellin C-terminal helical region
BJL90_RS07235	PF00700	Bacterial flagellin C-terminal helical region
BJL90_RS07235	PF00669	Bacterial flagellin N-terminal helical region
BJL90_RS07250	PF09371	Tex-like protein N-terminal domain
BJL90_RS07250	PF16921	Tex protein YqgF-like domain
BJL90_RS07250	PF00575	S1 RNA binding domain
BJL90_RS07250	PF17674	HHH domain
BJL90_RS07255	PF00005	ABC transporter
BJL90_RS07260	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS07260	PF00072	Response regulator receiver domain
BJL90_RS07265	PF13407	Periplasmic binding protein domain
BJL90_RS07270	PF00005	ABC transporter
BJL90_RS07275	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS07280	PF00107	Zinc-binding dehydrogenase
BJL90_RS07280	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS07285	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BJL90_RS07285	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BJL90_RS07290	PF00596	Class II Aldolase and Adducin N-terminal domain
BJL90_RS07310	PF12822	ECF transporter, substrate-specific component
BJL90_RS07320	PF02367	Threonylcarbamoyl adenosine biosynthesis protein TsaE
BJL90_RS07325	PF06580	Histidine kinase
BJL90_RS07325	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS07330	PF00072	Response regulator receiver domain
BJL90_RS07330	PF04397	LytTr DNA-binding domain
BJL90_RS07335	PF00350	Dynamin family
BJL90_RS07340	PF00350	Dynamin family
BJL90_RS07345	PF01435	Peptidase family M48
BJL90_RS07350	PF00350	Dynamin family
BJL90_RS07360	PF00814	Glycoprotease family
BJL90_RS07365	PF00583	Acetyltransferase (GNAT) family
BJL90_RS07375	PF02687	FtsX-like permease family
BJL90_RS07375	PF12704	MacB-like periplasmic core domain
BJL90_RS07380	PF12704	MacB-like periplasmic core domain
BJL90_RS07380	PF02687	FtsX-like permease family
BJL90_RS07385	PF00005	ABC transporter
BJL90_RS07390	PF00814	Glycoprotease family
BJL90_RS07395	PF16326	ABC transporter C-terminal domain
BJL90_RS07395	PF00005	ABC transporter
BJL90_RS07395	PF12848	ABC transporter
BJL90_RS07400	PF02629	CoA binding domain
BJL90_RS07400	PF06971	Putative DNA-binding protein N-terminus
BJL90_RS07405	PF01047	MarR family
BJL90_RS07410	PF12838	4Fe-4S dicluster domain
BJL90_RS07420	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BJL90_RS07420	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
BJL90_RS07425	PF01636	Phosphotransferase enzyme family
BJL90_RS07450	PF04474	Protein of unknown function (DUF554)
BJL90_RS07455	PF00166	Chaperonin 10 Kd subunit
BJL90_RS07460	PF00118	TCP-1/cpn60 chaperonin family
BJL90_RS07465	PF07875	Coat F domain
BJL90_RS07485	PF00571	CBS domain
BJL90_RS07485	PF00478	IMP dehydrogenase / GMP reductase domain
BJL90_RS07490	PF00117	Glutamine amidotransferase class-I
BJL90_RS07490	PF00958	GMP synthase C terminal domain
BJL90_RS07500	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
BJL90_RS07530	PF00860	Permease family
BJL90_RS07535	PF02222	ATP-grasp domain
BJL90_RS07535	PF17769	Phosphoribosylaminoimidazole carboxylase C-terminal domain
BJL90_RS07540	PF00731	AIR carboxylase
BJL90_RS07545	PF01259	SAICAR synthetase
BJL90_RS07550	PF00156	Phosphoribosyl transferase domain
BJL90_RS07555	PF02769	AIR synthase related protein, C-terminal domain
BJL90_RS07555	PF00586	AIR synthase related protein, N-terminal domain
BJL90_RS07560	PF00551	Formyl transferase
BJL90_RS07565	PF01808	AICARFT/IMPCHase bienzyme
BJL90_RS07565	PF02142	MGS-like domain
BJL90_RS07570	PF02844	Phosphoribosylglycinamide synthetase, N domain
BJL90_RS07570	PF02843	Phosphoribosylglycinamide synthetase, C domain
BJL90_RS07570	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
BJL90_RS07575	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS07575	PF00672	HAMP domain
BJL90_RS07575	PF02743	Cache domain
BJL90_RS07585	PF03180	NLPA lipoprotein
BJL90_RS07590	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS07595	PF00005	ABC transporter
BJL90_RS07595	PF09383	NIL domain
BJL90_RS07600	PF01371	Trp repressor protein
BJL90_RS07605	PF00696	Amino acid kinase family
BJL90_RS07605	PF13840	ACT domain 
BJL90_RS07610	PF01012	Electron transfer flavoprotein domain
BJL90_RS07615	PF01012	Electron transfer flavoprotein domain
BJL90_RS07615	PF00766	Electron transfer flavoprotein FAD-binding domain
BJL90_RS07620	PF01565	FAD binding domain 
BJL90_RS07620	PF02913	FAD linked oxidases, C-terminal domain
BJL90_RS07640	PF02811	PHP domain
BJL90_RS07650	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BJL90_RS07650	PF00037	4Fe-4S binding domain
BJL90_RS07650	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS07655	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BJL90_RS07655	PF00037	4Fe-4S binding domain
BJL90_RS07655	PF02256	Iron hydrogenase small subunit
BJL90_RS07655	PF02906	Iron only hydrogenase large subunit, C-terminal domain
BJL90_RS07660	PF03861	ANTAR domain
BJL90_RS07660	PF00072	Response regulator receiver domain
BJL90_RS07665	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS07665	PF12282	Signal transduction histidine kinase
BJL90_RS07665	PF07568	Histidine kinase
BJL90_RS07670	PF06277	Ethanolamine utilisation protein EutA
BJL90_RS07675	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
BJL90_RS07680	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
BJL90_RS07685	PF00936	BMC domain
BJL90_RS07695	PF00171	Aldehyde dehydrogenase family
BJL90_RS07695	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS07700	PF00936	BMC domain
BJL90_RS07705	PF01923	Cobalamin adenosyltransferase
BJL90_RS07710	PF06130	Phosphate propanoyltransferase
BJL90_RS07720	PF03319	Ethanolamine utilisation protein EutN/carboxysome
BJL90_RS07725	PF12838	4Fe-4S dicluster domain
BJL90_RS07725	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS07725	PF13375	RnfC Barrel sandwich hybrid domain
BJL90_RS07725	PF10531	SLBB domain
BJL90_RS07735	PF04346	Ethanolamine utilisation protein, EutH
BJL90_RS07740	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS07765	PF00793	DAHP synthetase I family
BJL90_RS07765	PF18152	DAHP synthase ferredoxin-like domain
BJL90_RS07770	PF00425	chorismate binding enzyme
BJL90_RS07770	PF04715	Anthranilate synthase component I, N terminal region
BJL90_RS07775	PF00591	Glycosyl transferase family, a/b domain
BJL90_RS07775	PF02885	Glycosyl transferase family, helical bundle domain
BJL90_RS07775	PF00117	Glutamine amidotransferase class-I
BJL90_RS07780	PF02885	Glycosyl transferase family, helical bundle domain
BJL90_RS07780	PF00591	Glycosyl transferase family, a/b domain
BJL90_RS07785	PF00218	Indole-3-glycerol phosphate synthase
BJL90_RS07790	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
BJL90_RS07795	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS07800	PF00290	Tryptophan synthase alpha chain
BJL90_RS07805	PF02153	Prephenate dehydrogenase
BJL90_RS07805	PF01842	ACT domain
BJL90_RS07810	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BJL90_RS07815	PF00800	Prephenate dehydratase
BJL90_RS07815	PF01842	ACT domain
BJL90_RS07815	PF01817	Chorismate mutase type II
BJL90_RS07820	PF01264	Chorismate synthase
BJL90_RS07825	PF01761	3-dehydroquinate synthase
BJL90_RS07830	PF01202	Shikimate kinase
BJL90_RS07835	PF18698	Histidine kinase sensor domain
BJL90_RS07835	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS07835	PF00989	PAS fold
BJL90_RS07835	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS07835	PF00672	HAMP domain
BJL90_RS07840	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS07840	PF12729	Four helix bundle sensory module for signal transduction
BJL90_RS07840	PF00672	HAMP domain
BJL90_RS07845	PF13361	UvrD-like helicase C-terminal domain
BJL90_RS07845	PF00580	UvrD/REP helicase N-terminal domain
BJL90_RS07850	PF00533	BRCA1 C Terminus (BRCT) domain
BJL90_RS07850	PF12826	Helix-hairpin-helix motif
BJL90_RS07850	PF03120	NAD-dependent DNA ligase OB-fold domain
BJL90_RS07850	PF01653	NAD-dependent DNA ligase adenylation domain
BJL90_RS07860	PF02915	Rubrerythrin
BJL90_RS07870	PF07670	Nucleoside recognition
BJL90_RS07870	PF02421	Ferrous iron transport protein B
BJL90_RS07870	PF07664	Ferrous iron transport protein B C terminus
BJL90_RS07875	PF03059	Nicotianamine synthase protein
BJL90_RS07890	PF00586	AIR synthase related protein, N-terminal domain
BJL90_RS07890	PF02769	AIR synthase related protein, C-terminal domain
BJL90_RS07890	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
BJL90_RS07895	PF04122	Putative cell wall binding repeat 2
BJL90_RS07895	PF01520	N-acetylmuramoyl-L-alanine amidase
BJL90_RS07900	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BJL90_RS07910	PF01138	3' exoribonuclease family, domain 1
BJL90_RS07910	PF03725	3' exoribonuclease family, domain 2
BJL90_RS07915	PF01725	Ham1 family
BJL90_RS07920	PF12850	Calcineurin-like phosphoesterase superfamily domain
BJL90_RS07955	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS07955	PF00589	Phage integrase family
BJL90_RS07965	PF13936	Helix-turn-helix domain
BJL90_RS07965	PF13936	Helix-turn-helix domain
BJL90_RS07975	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
BJL90_RS07975	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
BJL90_RS07980	PF00374	Nickel-dependent hydrogenase
BJL90_RS07995	PF07503	HypF finger
BJL90_RS07995	PF17788	HypF Kae1-like domain
BJL90_RS07995	PF00708	Acylphosphatase
BJL90_RS07995	PF01300	Telomere recombination
BJL90_RS08005	PF01924	Hydrogenase formation hypA family
BJL90_RS08010	PF00586	AIR synthase related protein, N-terminal domain
BJL90_RS08010	PF02769	AIR synthase related protein, C-terminal domain
BJL90_RS08015	PF07883	Cupin domain
BJL90_RS08025	PF00999	Sodium/hydrogen exchanger family
BJL90_RS08030	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS08045	PF02073	Thermophilic metalloprotease (M29)
BJL90_RS08050	PF00497	Bacterial extracellular solute-binding proteins, family 3
BJL90_RS08055	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS08060	PF00005	ABC transporter
BJL90_RS08070	PF00107	Zinc-binding dehydrogenase
BJL90_RS08070	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS08075	PF03099	Biotin/lipoate A/B protein ligase family
BJL90_RS08080	PF04055	Radical SAM superfamily
BJL90_RS08085	PF13426	PAS domain
BJL90_RS08085	PF00158	Sigma-54 interaction domain
BJL90_RS08085	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS08095	PF00676	Dehydrogenase E1 component
BJL90_RS08100	PF02779	Transketolase, pyrimidine binding domain
BJL90_RS08100	PF02780	Transketolase, C-terminal domain
BJL90_RS08105	PF01513	ATP-NAD kinase
BJL90_RS08110	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
BJL90_RS08110	PF00364	Biotin-requiring enzyme
BJL90_RS08110	PF02817	e3 binding domain
BJL90_RS08115	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BJL90_RS08115	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS08125	PF00158	Sigma-54 interaction domain
BJL90_RS08125	PF13426	PAS domain
BJL90_RS08125	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS08130	PF07005	Sugar-binding N-terminal domain
BJL90_RS08130	PF17042	Nucleotide-binding C-terminal domain
BJL90_RS08135	PF02447	GntP family permease
BJL90_RS08145	PF00920	Dehydratase family
BJL90_RS08150	PF02548	Ketopantoate hydroxymethyltransferase
BJL90_RS08160	PF00963	Cohesin domain
BJL90_RS08160	PF00395	S-layer homology domain
BJL90_RS08170	PF13847	Methyltransferase domain
BJL90_RS08210	PF07726	ATPase family associated with various cellular activities (AAA)
BJL90_RS08210	PF17863	AAA lid domain
BJL90_RS08240	PF00395	S-layer homology domain
BJL90_RS08240	PF02018	Carbohydrate binding domain
BJL90_RS08240	PF06452	Carbohydrate family 9 binding domain-like
BJL90_RS08240	PF00331	Glycosyl hydrolase family 10
BJL90_RS08245	PF04461	Protein of unknown function (DUF520)
BJL90_RS08250	PF00483	Nucleotidyl transferase
BJL90_RS08255	PF06165	Glycosyltransferase family 36
BJL90_RS08255	PF10091	Putative glucoamylase
BJL90_RS08255	PF17167	Glycosyl hydrolase 36 superfamily, catalytic domain
BJL90_RS08270	PF00005	ABC transporter
BJL90_RS08275	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS08290	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS08290	PF00563	EAL domain
BJL90_RS08290	PF03707	Bacterial signalling protein N terminal repeat
BJL90_RS08295	PF01008	Initiation factor 2 subunit family
BJL90_RS08300	PF02535	ZIP Zinc transporter
BJL90_RS08305	PF01522	Polysaccharide deacetylase
BJL90_RS08310	PF01520	N-acetylmuramoyl-L-alanine amidase
BJL90_RS08310	PF00395	S-layer homology domain
BJL90_RS08320	PF13393	Histidyl-tRNA synthetase
BJL90_RS08325	PF03063	Prismane/CO dehydrogenase family
BJL90_RS08340	PF00005	ABC transporter
BJL90_RS08345	PF08331	Domain of unknown function (DUF1730)
BJL90_RS08360	PF00258	Flavodoxin
BJL90_RS08365	PF07664	Ferrous iron transport protein B C terminus
BJL90_RS08365	PF07670	Nucleoside recognition
BJL90_RS08365	PF02421	Ferrous iron transport protein B
BJL90_RS08370	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS08370	PF00672	HAMP domain
BJL90_RS08375	PF00180	Isocitrate/isopropylmalate dehydrogenase
BJL90_RS08375	PF18324	Hypothetical protein TT1725
BJL90_RS08380	PF00330	Aconitase family (aconitate hydratase)
BJL90_RS08385	PF00682	HMGL-like
BJL90_RS08390	PF01584	CheW-like domain
BJL90_RS08395	PF12320	Type 5 capsule protein repressor C-terminal domain
BJL90_RS08395	PF00149	Calcineurin-like phosphoesterase
BJL90_RS08400	PF13476	AAA domain
BJL90_RS08410	PF06071	Protein of unknown function (DUF933)
BJL90_RS08410	PF01926	50S ribosome-binding GTPase
BJL90_RS08415	PF00731	AIR carboxylase
BJL90_RS08420	PF02540	NAD synthase
BJL90_RS08425	PF01969	Protein of unknown function DUF111
BJL90_RS08430	PF03180	NLPA lipoprotein
BJL90_RS08435	PF09383	NIL domain
BJL90_RS08435	PF00005	ABC transporter
BJL90_RS08440	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS08445	PF00501	AMP-binding enzyme
BJL90_RS08445	PF14535	AMP-binding enzyme C-terminal domain
BJL90_RS08450	PF00155	Aminotransferase class I and II
BJL90_RS08455	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
BJL90_RS08465	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BJL90_RS08465	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BJL90_RS08470	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS08500	PF08264	Anticodon-binding domain of tRNA
BJL90_RS08500	PF00133	tRNA synthetases class I (I, L, M and V)
BJL90_RS08510	PF13686	DsrE/DsrF/DrsH-like family
BJL90_RS08515	PF00266	Aminotransferase class-V
BJL90_RS08520	PF00289	Biotin carboxylase, N-terminal domain
BJL90_RS08520	PF02436	Conserved carboxylase domain
BJL90_RS08520	PF02785	Biotin carboxylase C-terminal domain
BJL90_RS08520	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BJL90_RS08520	PF00364	Biotin-requiring enzyme
BJL90_RS08520	PF00682	HMGL-like
BJL90_RS08525	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS08525	PF09308	LuxQ, periplasmic
BJL90_RS08525	PF00072	Response regulator receiver domain
BJL90_RS08525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS08530	PF00356	Bacterial regulatory proteins, lacI family
BJL90_RS08535	PF05697	Bacterial trigger factor protein (TF)
BJL90_RS08535	PF05698	Bacterial trigger factor protein (TF) C-terminus
BJL90_RS08535	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
BJL90_RS08540	PF00574	Clp protease
BJL90_RS08545	PF06689	ClpX C4-type zinc finger
BJL90_RS08545	PF07724	AAA domain (Cdc48 subfamily)
BJL90_RS08545	PF10431	C-terminal, D2-small domain, of ClpB protein 
BJL90_RS08555	PF02417	Chromate transporter
BJL90_RS08560	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS08560	PF05362	Lon protease (S16) C-terminal proteolytic domain
BJL90_RS08565	PF02190	ATP-dependent protease La (LON) substrate-binding domain 
BJL90_RS08565	PF05362	Lon protease (S16) C-terminal proteolytic domain
BJL90_RS08565	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS08570	PF01926	50S ribosome-binding GTPase
BJL90_RS08580	PF00301	Rubredoxin
BJL90_RS08585	PF00171	Aldehyde dehydrogenase family
BJL90_RS08590	PF00696	Amino acid kinase family
BJL90_RS08595	PF14748	Pyrroline-5-carboxylate reductase dimerisation
BJL90_RS08595	PF03807	NADP oxidoreductase coenzyme F420-dependent
BJL90_RS08600	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
BJL90_RS08600	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
BJL90_RS08605	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
BJL90_RS08605	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
BJL90_RS08630	PF04647	Accessory gene regulator B
BJL90_RS08640	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS08640	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS08640	PF00672	HAMP domain
BJL90_RS08650	PF13091	PLD-like domain
BJL90_RS08650	PF13396	Phospholipase_D-nuclease N-terminal
BJL90_RS08665	PF01869	BadF/BadG/BcrA/BcrD ATPase family
BJL90_RS08675	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS08675	PF07702	UTRA domain
BJL90_RS08685	PF07969	Amidohydrolase family
BJL90_RS08690	PF01022	Bacterial regulatory protein, arsR family
BJL90_RS08695	PF06953	Arsenical resistance operon trans-acting repressor ArsD
BJL90_RS08700	PF02374	Anion-transporting ATPase
BJL90_RS08705	PF02374	Anion-transporting ATPase
BJL90_RS08710	PF13426	PAS domain
BJL90_RS08710	PF00158	Sigma-54 interaction domain
BJL90_RS08710	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS08720	PF00873	AcrB/AcrD/AcrF family
BJL90_RS08725	PF00266	Aminotransferase class-V
BJL90_RS08730	PF03063	Prismane/CO dehydrogenase family
BJL90_RS08735	PF13649	Methyltransferase domain
BJL90_RS08740	PF00027	Cyclic nucleotide-binding domain
BJL90_RS08740	PF13545	Crp-like helix-turn-helix domain
BJL90_RS08750	PF02583	Metal-sensitive transcriptional repressor
BJL90_RS08755	PF01022	Bacterial regulatory protein, arsR family
BJL90_RS08760	PF01758	Sodium Bile acid symporter family
BJL90_RS08765	PF01910	Thiamine-binding protein
BJL90_RS08770	PF04309	Glycerol-3-phosphate responsive antiterminator
BJL90_RS08775	PF00230	Major intrinsic protein
BJL90_RS08780	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BJL90_RS08780	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BJL90_RS08785	PF04324	BFD-like [2Fe-2S] binding domain
BJL90_RS08785	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS08790	PF04324	BFD-like [2Fe-2S] binding domain
BJL90_RS08790	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS08800	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS08800	PF00072	Response regulator receiver domain
BJL90_RS08800	PF00158	Sigma-54 interaction domain
BJL90_RS08815	PF12729	Four helix bundle sensory module for signal transduction
BJL90_RS08815	PF00672	HAMP domain
BJL90_RS08815	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS08825	PF00579	tRNA synthetases class I (W and Y)
BJL90_RS08835	PF05949	Bacterial protein of unknown function (DUF881)
BJL90_RS08845	PF00491	Arginase family
BJL90_RS08850	PF17284	Spermidine synthase tetramerisation domain
BJL90_RS08875	PF00072	Response regulator receiver domain
BJL90_RS08875	PF04397	LytTr DNA-binding domain
BJL90_RS08895	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS08895	PF13426	PAS domain
BJL90_RS08895	PF00158	Sigma-54 interaction domain
BJL90_RS08900	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS08905	PF00480	ROK family
BJL90_RS08915	PF00872	Transposase, Mutator family
BJL90_RS08920	PF00665	Integrase core domain
BJL90_RS08920	PF13276	HTH-like domain
BJL90_RS08920	PF13333	Integrase core domain
BJL90_RS08930	PF00082	Subtilase family
BJL90_RS08935	PF05593	RHS Repeat
BJL90_RS08965	PF05593	RHS Repeat
BJL90_RS08980	PF02796	Helix-turn-helix domain of resolvase
BJL90_RS08980	PF00239	Resolvase, N terminal domain
BJL90_RS09040	PF14319	Transposase zinc-binding domain
BJL90_RS09040	PF04986	Putative transposase
BJL90_RS09045	PF00472	RF-1 domain
BJL90_RS09045	PF03462	PCRF domain
BJL90_RS09050	PF01139	tRNA-splicing ligase RtcB
BJL90_RS09055	PF10057	Uncharacterized conserved protein (DUF2294)
BJL90_RS09065	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BJL90_RS09065	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BJL90_RS09070	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS09085	PF02464	Competence-damaged protein
BJL90_RS09085	PF18146	Damage-inducible protein CinA KH domain
BJL90_RS09085	PF00994	Probable molybdopterin binding domain
BJL90_RS09095	PF13419	Haloacid dehalogenase-like hydrolase
BJL90_RS09105	PF12804	MobA-like NTP transferase domain
BJL90_RS09120	PF00550	Phosphopantetheine attachment site
BJL90_RS09125	PF01545	Cation efflux family
BJL90_RS09125	PF16916	Dimerisation domain of Zinc Transporter
BJL90_RS09130	PF02690	Na+/Pi-cotransporter
BJL90_RS09135	PF03575	Peptidase family S51
BJL90_RS09140	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS09140	PF08245	Mur ligase middle domain
BJL90_RS09140	PF08443	RimK-like ATP-grasp domain
BJL90_RS09150	PF02424	ApbE family
BJL90_RS09155	PF00082	Subtilase family
BJL90_RS09160	PF00963	Cohesin domain
BJL90_RS09160	PF00395	S-layer homology domain
BJL90_RS09175	PF03734	L,D-transpeptidase catalytic domain
BJL90_RS09175	PF01476	LysM domain
BJL90_RS09180	PF02310	B12 binding domain
BJL90_RS09180	PF02574	Homocysteine S-methyltransferase
BJL90_RS09180	PF02607	B12 binding domain
BJL90_RS09180	PF02965	Vitamin B12 dependent methionine synthase, activation domain
BJL90_RS09180	PF00809	Pterin binding enzyme
BJL90_RS09185	PF00989	PAS fold
BJL90_RS09185	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS09185	PF00672	HAMP domain
BJL90_RS09185	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS09185	PF18698	Histidine kinase sensor domain
BJL90_RS09190	PF00909	Ammonium Transporter Family
BJL90_RS09195	PF00543	Nitrogen regulatory protein P-II
BJL90_RS09200	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
BJL90_RS09200	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS09200	PF10996	Beta-Casp domain
BJL90_RS09205	PF02308	MgtC family
BJL90_RS09210	PF01966	HD domain
BJL90_RS09210	PF11871	Domain of unknown function (DUF3391)
BJL90_RS09215	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS09215	PF00072	Response regulator receiver domain
BJL90_RS09220	PF00381	PTS HPr component phosphorylation site
BJL90_RS09225	PF09339	IclR helix-turn-helix domain
BJL90_RS09225	PF01614	Bacterial transcriptional regulator
BJL90_RS09230	PF01081	KDPG and KHG aldolase
BJL90_RS09235	PF00294	pfkB family carbohydrate kinase
BJL90_RS09240	PF00294	pfkB family carbohydrate kinase
BJL90_RS09250	PF01232	Mannitol dehydrogenase Rossmann domain
BJL90_RS09250	PF08125	Mannitol dehydrogenase C-terminal domain
BJL90_RS09255	PF04295	D-galactarate dehydratase / Altronate hydrolase, C terminus
BJL90_RS09255	PF08666	SAF domain
BJL90_RS09260	PF02614	Glucuronate isomerase
BJL90_RS09265	PF00672	HAMP domain
BJL90_RS09265	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS09265	PF02743	Cache domain
BJL90_RS09265	PF06580	Histidine kinase
BJL90_RS09270	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS09270	PF00072	Response regulator receiver domain
BJL90_RS09275	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS09285	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS09290	PF00356	Bacterial regulatory proteins, lacI family
BJL90_RS09295	PF00005	ABC transporter
BJL90_RS09295	PF17912	MalK OB fold domain
BJL90_RS09295	PF03459	TOBE domain
BJL90_RS09300	PF07470	Glycosyl Hydrolase Family 88
BJL90_RS09310	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS09315	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS09320	PF00295	Glycosyl hydrolases family 28
BJL90_RS09325	PF04962	KduI/IolB family
BJL90_RS09335	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS09335	PF07729	FCD domain
BJL90_RS09340	PF00107	Zinc-binding dehydrogenase
BJL90_RS09340	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS09355	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS09360	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS09360	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS09365	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS09365	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS09370	PF03786	D-mannonate dehydratase (UxuA)
BJL90_RS09375	PF01232	Mannitol dehydrogenase Rossmann domain
BJL90_RS09375	PF08125	Mannitol dehydrogenase C-terminal domain
BJL90_RS09380	PF07702	UTRA domain
BJL90_RS09380	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS09385	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS09390	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS09395	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS09400	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS09405	PF00920	Dehydratase family
BJL90_RS09410	PF13378	Enolase C-terminal domain-like
BJL90_RS09410	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
BJL90_RS09415	PF03328	HpcH/HpaI aldolase/citrate lyase family
BJL90_RS09425	PF03951	Glutamine synthetase, beta-Grasp domain
BJL90_RS09425	PF00120	Glutamine synthetase, catalytic domain
BJL90_RS09440	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BJL90_RS09440	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BJL90_RS09445	PF01960	ArgJ family
BJL90_RS09450	PF00696	Amino acid kinase family
BJL90_RS09455	PF00202	Aminotransferase class-III
BJL90_RS09460	PF00117	Glutamine amidotransferase class-I
BJL90_RS09460	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
BJL90_RS09465	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BJL90_RS09465	PF02142	MGS-like domain
BJL90_RS09465	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BJL90_RS09480	PF08279	HTH domain
BJL90_RS09480	PF13280	WYL domain
BJL90_RS09520	PF13443	Cro/C1-type HTH DNA-binding domain
BJL90_RS09535	PF00072	Response regulator receiver domain
BJL90_RS09535	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS09540	PF18719	ArlS sensor domain
BJL90_RS09540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS09540	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS09545	PF01493	GXGXG motif
BJL90_RS09545	PF00310	Glutamine amidotransferases class-II
BJL90_RS09545	PF01645	Conserved region in glutamate synthase
BJL90_RS09545	PF04898	Glutamate synthase central domain
BJL90_RS09555	PF02915	Rubrerythrin
BJL90_RS09565	PF00682	HMGL-like
BJL90_RS09570	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS09575	PF00005	ABC transporter
BJL90_RS09580	PF01891	Cobalt uptake substrate-specific transmembrane region
BJL90_RS09595	PF00005	ABC transporter
BJL90_RS09610	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS09615	PF00872	Transposase, Mutator family
BJL90_RS09620	PF01145	SPFH domain / Band 7 family
BJL90_RS09620	PF15975	Flotillin
BJL90_RS09635	PF00072	Response regulator receiver domain
BJL90_RS09635	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS09640	PF00672	HAMP domain
BJL90_RS09640	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS09640	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS09650	PF03471	Transporter associated domain
BJL90_RS09650	PF00571	CBS domain
BJL90_RS09650	PF01595	Cyclin M transmembrane N-terminal domain
BJL90_RS09660	PF00005	ABC transporter
BJL90_RS09665	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS09675	PF04239	Protein of unknown function (DUF421)
BJL90_RS09680	PF00462	Glutaredoxin
BJL90_RS09685	PF13840	ACT domain 
BJL90_RS09685	PF00696	Amino acid kinase family
BJL90_RS09695	PF12146	Serine aminopeptidase, S33
BJL90_RS09700	PF01541	GIY-YIG catalytic domain
BJL90_RS09705	PF00210	Ferritin-like domain
BJL90_RS09720	PF00266	Aminotransferase class-V
BJL90_RS09725	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS09730	PF03590	Aspartate-ammonia ligase
BJL90_RS09745	PF03144	Elongation factor Tu domain 2
BJL90_RS09745	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS09745	PF00679	Elongation factor G C-terminus
BJL90_RS09745	PF14492	Elongation Factor G, domain II
BJL90_RS09755	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BJL90_RS09755	PF00037	4Fe-4S binding domain
BJL90_RS09755	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS09760	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
BJL90_RS09760	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BJL90_RS09760	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS09780	PF00085	Thioredoxin
BJL90_RS09785	PF04723	Glycine reductase complex selenoprotein A
BJL90_RS09790	PF04723	Glycine reductase complex selenoprotein A
BJL90_RS09795	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BJL90_RS09800	PF02504	Fatty acid synthesis protein
BJL90_RS09805	PF09338	Glycine/sarcosine/betaine reductase component B subunits
BJL90_RS09810	PF07355	Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
BJL90_RS09815	PF07355	Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
BJL90_RS09820	PF02028	BCCT, betaine/carnitine/choline family transporter
BJL90_RS09825	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS09845	PF01869	BadF/BadG/BcrA/BcrD ATPase family
BJL90_RS09855	PF07136	Protein of unknown function (DUF1385)
BJL90_RS09875	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BJL90_RS09880	PF01098	Cell cycle protein
BJL90_RS09885	PF01769	Divalent cation transporter
BJL90_RS09885	PF00571	CBS domain
BJL90_RS09885	PF03448	MgtE intracellular N domain
BJL90_RS09890	PF07486	Cell Wall Hydrolase
BJL90_RS09890	PF01471	Putative peptidoglycan binding domain
BJL90_RS09895	PF14620	YpeB sporulation
BJL90_RS09900	PF01557	Fumarylacetoacetate (FAA) hydrolase family
BJL90_RS09905	PF04055	Radical SAM superfamily
BJL90_RS09905	PF12544	Lysine-2,3-aminomutase 
BJL90_RS09920	PF00342	Phosphoglucose isomerase
BJL90_RS09925	PF01177	Asp/Glu/Hydantoin racemase
BJL90_RS09930	PF13492	GAF domain
BJL90_RS09930	PF06580	Histidine kinase
BJL90_RS09930	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS09930	PF07694	5TMR of 5TMR-LYT
BJL90_RS09935	PF04397	LytTr DNA-binding domain
BJL90_RS09935	PF00072	Response regulator receiver domain
BJL90_RS09950	PF01943	Polysaccharide biosynthesis protein
BJL90_RS09950	PF14667	Polysaccharide biosynthesis C-terminal domain
BJL90_RS09970	PF13545	Crp-like helix-turn-helix domain
BJL90_RS09970	PF00027	Cyclic nucleotide-binding domain
BJL90_RS09975	PF01226	Formate/nitrite transporter
BJL90_RS09980	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS09980	PF17862	AAA+ lid domain
BJL90_RS09980	PF01434	Peptidase family M41
BJL90_RS09990	PF07670	Nucleoside recognition
BJL90_RS09990	PF02421	Ferrous iron transport protein B
BJL90_RS09990	PF17910	FeoB cytosolic helical domain
BJL90_RS09990	PF07664	Ferrous iron transport protein B C terminus
BJL90_RS10005	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS10005	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BJL90_RS10030	PF10458	Valyl tRNA synthetase tRNA binding arm
BJL90_RS10030	PF00133	tRNA synthetases class I (I, L, M and V)
BJL90_RS10030	PF08264	Anticodon-binding domain of tRNA
BJL90_RS10035	PF08245	Mur ligase middle domain
BJL90_RS10035	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS10050	PF04239	Protein of unknown function (DUF421)
BJL90_RS10055	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BJL90_RS10060	PF07451	Stage V sporulation protein AD (SpoVAD)
BJL90_RS10065	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BJL90_RS10075	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BJL90_RS10080	PF08331	Domain of unknown function (DUF1730)
BJL90_RS10095	PF13649	Methyltransferase domain
BJL90_RS10100	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS10105	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS10110	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS10110	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS10115	PF00005	ABC transporter
BJL90_RS10115	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS10125	PF02690	Na+/Pi-cotransporter
BJL90_RS10130	PF02632	BioY family
BJL90_RS10135	PF01522	Polysaccharide deacetylase
BJL90_RS10135	PF18627	Peptidoglycan GlcNAc deacetylase N-terminal domain
BJL90_RS10140	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS10140	PF01225	Mur ligase family, catalytic domain
BJL90_RS10140	PF08245	Mur ligase middle domain
BJL90_RS10150	PF01814	Hemerythrin HHE cation binding domain
BJL90_RS10155	PF07670	Nucleoside recognition
BJL90_RS10160	PF07670	Nucleoside recognition
BJL90_RS10165	PF00120	Glutamine synthetase, catalytic domain
BJL90_RS10165	PF03951	Glutamine synthetase, beta-Grasp domain
BJL90_RS10175	PF00664	ABC transporter transmembrane region
BJL90_RS10175	PF00005	ABC transporter
BJL90_RS10195	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS10195	PF07730	Histidine kinase
BJL90_RS10200	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS10200	PF00072	Response regulator receiver domain
BJL90_RS10205	PF14537	Cytochrome c3
BJL90_RS10205	PF00890	FAD binding domain
BJL90_RS10210	PF04205	FMN-binding domain
BJL90_RS10210	PF03358	NADPH-dependent FMN reductase
BJL90_RS10210	PF00890	FAD binding domain
BJL90_RS10215	PF03795	YCII-related domain
BJL90_RS10220	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS10220	PF00672	HAMP domain
BJL90_RS10220	PF02743	Cache domain
BJL90_RS10240	PF13007	Transposase C of IS166 homeodomain
BJL90_RS10240	PF03050	Transposase IS66 family 
BJL90_RS10240	PF13817	IS66 C-terminal element
BJL90_RS10240	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS10255	PF01757	Acyltransferase family
BJL90_RS10265	PF01695	IstB-like ATP binding protein
BJL90_RS10270	PF00698	Acyl transferase domain
BJL90_RS10275	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS10285	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS10285	PF16197	Ketoacyl-synthetase C-terminal extension
BJL90_RS10285	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS10285	PF08659	KR domain
BJL90_RS10285	PF00550	Phosphopantetheine attachment site
BJL90_RS10285	PF14765	Polyketide synthase dehydratase
BJL90_RS10290	PF00550	Phosphopantetheine attachment site
BJL90_RS10290	PF00668	Condensation domain
BJL90_RS10290	PF00501	AMP-binding enzyme
BJL90_RS10290	PF08242	Methyltransferase domain
BJL90_RS10295	PF00975	Thioesterase domain
BJL90_RS10295	PF00668	Condensation domain
BJL90_RS10295	PF13193	AMP-binding enzyme C-terminal domain
BJL90_RS10295	PF00550	Phosphopantetheine attachment site
BJL90_RS10295	PF00501	AMP-binding enzyme
BJL90_RS10300	PF01695	IstB-like ATP binding protein
BJL90_RS10310	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS10310	PF14765	Polyketide synthase dehydratase
BJL90_RS10310	PF08659	KR domain
BJL90_RS10310	PF16197	Ketoacyl-synthetase C-terminal extension
BJL90_RS10310	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS10310	PF00550	Phosphopantetheine attachment site
BJL90_RS10315	PF13193	AMP-binding enzyme C-terminal domain
BJL90_RS10315	PF00501	AMP-binding enzyme
BJL90_RS10315	PF00668	Condensation domain
BJL90_RS10315	PF16197	Ketoacyl-synthetase C-terminal extension
BJL90_RS10315	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS10315	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS10315	PF08659	KR domain
BJL90_RS10315	PF00550	Phosphopantetheine attachment site
BJL90_RS10315	PF14765	Polyketide synthase dehydratase
BJL90_RS10320	PF00550	Phosphopantetheine attachment site
BJL90_RS10320	PF08659	KR domain
BJL90_RS10320	PF13193	AMP-binding enzyme C-terminal domain
BJL90_RS10320	PF00668	Condensation domain
BJL90_RS10320	PF16197	Ketoacyl-synthetase C-terminal extension
BJL90_RS10320	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS10320	PF14765	Polyketide synthase dehydratase
BJL90_RS10320	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS10320	PF00501	AMP-binding enzyme
BJL90_RS10325	PF14765	Polyketide synthase dehydratase
BJL90_RS10325	PF00550	Phosphopantetheine attachment site
BJL90_RS10325	PF08659	KR domain
BJL90_RS10325	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS10325	PF16197	Ketoacyl-synthetase C-terminal extension
BJL90_RS10325	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS10325	PF13193	AMP-binding enzyme C-terminal domain
BJL90_RS10325	PF00668	Condensation domain
BJL90_RS10325	PF00501	AMP-binding enzyme
BJL90_RS10330	PF16197	Ketoacyl-synthetase C-terminal extension
BJL90_RS10330	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS10330	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS10330	PF08659	KR domain
BJL90_RS10330	PF08242	Methyltransferase domain
BJL90_RS10330	PF00550	Phosphopantetheine attachment site
BJL90_RS10330	PF14765	Polyketide synthase dehydratase
BJL90_RS10345	PF06452	Carbohydrate family 9 binding domain-like
BJL90_RS10345	PF00395	S-layer homology domain
BJL90_RS10345	PF00331	Glycosyl hydrolase family 10
BJL90_RS10345	PF02018	Carbohydrate binding domain
BJL90_RS10350	PF01906	Putative heavy-metal-binding
BJL90_RS10355	PF04024	PspC domain
BJL90_RS10380	PF00005	ABC transporter
BJL90_RS10385	PF00005	ABC transporter
BJL90_RS10390	PF02361	Cobalt transport protein
BJL90_RS10405	PF00005	ABC transporter
BJL90_RS10410	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS10415	PF12849	PBP superfamily domain
BJL90_RS10425	PF01032	FecCD transport family
BJL90_RS10430	PF00005	ABC transporter
BJL90_RS10440	PF01325	Iron dependent repressor, N-terminal DNA binding domain
BJL90_RS10440	PF02742	Iron dependent repressor, metal binding and dimerisation domain
BJL90_RS10450	PF07664	Ferrous iron transport protein B C terminus
BJL90_RS10450	PF17910	FeoB cytosolic helical domain
BJL90_RS10450	PF07670	Nucleoside recognition
BJL90_RS10450	PF02421	Ferrous iron transport protein B
BJL90_RS10455	PF08220	DeoR-like helix-turn-helix domain
BJL90_RS10455	PF00455	DeoR C terminal sensor domain
BJL90_RS10460	PF07005	Sugar-binding N-terminal domain
BJL90_RS10460	PF17042	Nucleotide-binding C-terminal domain
BJL90_RS10465	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
BJL90_RS10470	PF02447	GntP family permease
BJL90_RS10490	PF02245	Methylpurine-DNA glycosylase (MPG)
BJL90_RS10495	PF01553	Acyltransferase
BJL90_RS10500	PF00795	Carbon-nitrogen hydrolase
BJL90_RS10505	PF07486	Cell Wall Hydrolase
BJL90_RS10510	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BJL90_RS10510	PF02774	Semialdehyde dehydrogenase, dimerisation domain
BJL90_RS10515	PF00701	Dihydrodipicolinate synthetase family
BJL90_RS10520	PF05173	Dihydrodipicolinate reductase, C-terminus
BJL90_RS10520	PF01113	Dihydrodipicolinate reductase, N-terminus
BJL90_RS10525	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
BJL90_RS10525	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS10525	PF14602	Hexapeptide repeat of succinyl-transferase
BJL90_RS10530	PF00696	Amino acid kinase family
BJL90_RS10530	PF01842	ACT domain
BJL90_RS10530	PF13840	ACT domain 
BJL90_RS10535	PF00202	Aminotransferase class-III
BJL90_RS10545	PF02001	Protein of unknown function  DUF134
BJL90_RS10550	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS10550	PF00155	Aminotransferase class I and II
BJL90_RS10555	PF03063	Prismane/CO dehydrogenase family
BJL90_RS10560	PF02743	Cache domain
BJL90_RS10560	PF00672	HAMP domain
BJL90_RS10560	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS10565	PF01043	SecA preprotein cross-linking domain
BJL90_RS10565	PF07516	SecA Wing and Scaffold domain
BJL90_RS10565	PF07517	SecA DEAD-like domain
BJL90_RS10565	PF02810	SEC-C motif
BJL90_RS10575	PF00672	HAMP domain
BJL90_RS10575	PF02743	Cache domain
BJL90_RS10575	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS10580	PF01966	HD domain
BJL90_RS10585	PF00117	Glutamine amidotransferase class-I
BJL90_RS10590	PF00425	chorismate binding enzyme
BJL90_RS10590	PF04715	Anthranilate synthase component I, N terminal region
BJL90_RS10595	PF01063	Amino-transferase class IV
BJL90_RS10600	PF01227	GTP cyclohydrolase I
BJL90_RS10605	PF00809	Pterin binding enzyme
BJL90_RS10610	PF02152	Dihydroneopterin aldolase
BJL90_RS10615	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
BJL90_RS10620	PF18152	DAHP synthase ferredoxin-like domain
BJL90_RS10620	PF00793	DAHP synthetase I family
BJL90_RS10635	PF01256	Carbohydrate kinase
BJL90_RS10635	PF03853	YjeF-related protein N-terminus
BJL90_RS10650	PF05067	Manganese containing catalase
BJL90_RS10655	PF13367	PrsW family intramembrane metalloprotease
BJL90_RS10670	PF10502	Signal peptidase, peptidase S26 
BJL90_RS10675	PF00571	CBS domain
BJL90_RS10680	PF00381	PTS HPr component phosphorylation site
BJL90_RS10685	PF03129	Anticodon binding domain
BJL90_RS10685	PF02824	TGS domain
BJL90_RS10685	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BJL90_RS10685	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BJL90_RS10695	PF00892	EamA-like transporter family
BJL90_RS10700	PF10502	Signal peptidase, peptidase S26 
BJL90_RS10705	PF08331	Domain of unknown function (DUF1730)
BJL90_RS10710	PF13654	AAA domain
BJL90_RS10710	PF05362	Lon protease (S16) C-terminal proteolytic domain
BJL90_RS10715	PF00155	Aminotransferase class I and II
BJL90_RS10720	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
BJL90_RS10725	PF00873	AcrB/AcrD/AcrF family
BJL90_RS10735	PF10576	Iron-sulfur binding domain of endonuclease III
BJL90_RS10735	PF00633	Helix-hairpin-helix motif
BJL90_RS10735	PF00730	HhH-GPD superfamily base excision DNA repair protein
BJL90_RS10740	PF02491	SHS2 domain inserted in FTSA
BJL90_RS10745	PF04294	VanW like protein
BJL90_RS10755	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
BJL90_RS10755	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
BJL90_RS10765	PF00188	Cysteine-rich secretory protein family
BJL90_RS10770	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
BJL90_RS10775	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
BJL90_RS10780	PF02654	Cobalamin-5-phosphate synthase
BJL90_RS10785	PF00300	Histidine phosphatase superfamily (branch 1)
BJL90_RS10790	PF07685	CobB/CobQ-like glutamine amidotransferase domain
BJL90_RS10790	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
BJL90_RS10795	PF03186	CobD/Cbib protein
BJL90_RS10800	PF00155	Aminotransferase class I and II
BJL90_RS10815	PF07282	Putative transposase DNA-binding domain
BJL90_RS10815	PF01385	Probable transposase
BJL90_RS10815	PF12323	Helix-turn-helix domain
BJL90_RS10835	PF02645	Uncharacterised protein, DegV family COG1307
BJL90_RS10840	PF01520	N-acetylmuramoyl-L-alanine amidase
BJL90_RS10840	PF08239	Bacterial SH3 domain
BJL90_RS10855	PF00156	Phosphoribosyl transferase domain
BJL90_RS10860	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS10860	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
BJL90_RS10860	PF14602	Hexapeptide repeat of succinyl-transferase
BJL90_RS10865	PF07687	Peptidase dimerisation domain
BJL90_RS10865	PF01546	Peptidase family M20/M25/M40
BJL90_RS10880	PF00313	'Cold-shock' DNA-binding domain
BJL90_RS10885	PF01430	Hsp33 protein
BJL90_RS10910	PF10369	Small subunit of acetolactate synthase
BJL90_RS10915	PF07991	Acetohydroxy acid isomeroreductase, NADPH-binding domain
BJL90_RS10915	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
BJL90_RS10920	PF00682	HMGL-like
BJL90_RS10920	PF08502	LeuA allosteric (dimerisation) domain
BJL90_RS10925	PF00682	HMGL-like
BJL90_RS10925	PF08502	LeuA allosteric (dimerisation) domain
BJL90_RS10930	PF00330	Aconitase family (aconitate hydratase)
BJL90_RS10935	PF00694	Aconitase C-terminal domain
BJL90_RS10940	PF00180	Isocitrate/isopropylmalate dehydrogenase
BJL90_RS10945	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BJL90_RS10945	PF00205	Thiamine pyrophosphate enzyme, central domain
BJL90_RS10945	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS10950	PF03063	Prismane/CO dehydrogenase family
BJL90_RS10955	PF02082	Transcriptional regulator
BJL90_RS10970	PF04286	Protein of unknown function (DUF445)
BJL90_RS10975	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BJL90_RS10975	PF02824	TGS domain
BJL90_RS10975	PF03129	Anticodon binding domain
BJL90_RS10975	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BJL90_RS10980	PF01434	Peptidase family M41
BJL90_RS10980	PF17862	AAA+ lid domain
BJL90_RS10980	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS10985	PF00707	Translation initiation factor IF-3, C-terminal domain
BJL90_RS10985	PF05198	Translation initiation factor IF-3, N-terminal domain
BJL90_RS10990	PF01632	Ribosomal protein L35
BJL90_RS10995	PF00453	Ribosomal protein L20
BJL90_RS11000	PF02386	Cation transport protein
BJL90_RS11005	PF02080	TrkA-C domain
BJL90_RS11005	PF02254	TrkA-N domain
BJL90_RS11010	PF08032	RNA 2'-O ribose methyltransferase substrate binding
BJL90_RS11010	PF00588	SpoU rRNA Methylase family
BJL90_RS11015	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
BJL90_RS11015	PF01409	tRNA synthetases class II core domain (F)
BJL90_RS11020	PF17759	Phenylalanyl tRNA synthetase beta chain CLM domain
BJL90_RS11020	PF01588	Putative tRNA binding domain
BJL90_RS11020	PF03483	B3/4 domain
BJL90_RS11020	PF03147	Ferredoxin-fold anticodon binding domain
BJL90_RS11020	PF03484	tRNA synthetase B5 domain
BJL90_RS11025	PF05164	Cell division protein ZapA
BJL90_RS11030	PF01136	Peptidase family U32
BJL90_RS11030	PF16325	Peptidase family U32 C-terminal domain
BJL90_RS11035	PF01479	S4 domain
BJL90_RS11035	PF00579	tRNA synthetases class I (W and Y)
BJL90_RS11040	PF01966	HD domain
BJL90_RS11045	PF01915	Glycosyl hydrolase family 3 C-terminal domain
BJL90_RS11045	PF00933	Glycosyl hydrolase family 3 N terminal domain
BJL90_RS11050	PF00860	Permease family
BJL90_RS11055	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
BJL90_RS11055	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS11055	PF10371	Domain of unknown function
BJL90_RS11055	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
BJL90_RS11055	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II
BJL90_RS11070	PF00675	Insulinase (Peptidase family M16)
BJL90_RS11070	PF05193	Peptidase M16 inactive domain
BJL90_RS11070	PF08367	Peptidase M16C associated
BJL90_RS11075	PF03063	Prismane/CO dehydrogenase family
BJL90_RS11080	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
BJL90_RS11085	PF01268	Formate--tetrahydrofolate ligase
BJL90_RS11090	PF04961	Formiminotransferase-cyclodeaminase
BJL90_RS11095	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
BJL90_RS11095	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
BJL90_RS11110	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS11110	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
BJL90_RS11120	PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
BJL90_RS11125	PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
BJL90_RS11125	PF04060	Putative Fe-S cluster
BJL90_RS11130	PF02574	Homocysteine S-methyltransferase
BJL90_RS11130	PF02310	B12 binding domain
BJL90_RS11130	PF02607	B12 binding domain
BJL90_RS11130	PF00809	Pterin binding enzyme
BJL90_RS11130	PF02965	Vitamin B12 dependent methionine synthase, activation domain
BJL90_RS11135	PF03598	CO dehydrogenase/acetyl-CoA synthase complex beta subunit
BJL90_RS11135	PF18537	Carbon monoxide dehydrogenase subunit alpha N-terminal domain
BJL90_RS11140	PF01597	Glycine cleavage H-protein
BJL90_RS11145	PF00970	Oxidoreductase FAD-binding domain
BJL90_RS11145	PF00175	Oxidoreductase NAD-binding domain 
BJL90_RS11145	PF00111	2Fe-2S iron-sulfur cluster binding domain
BJL90_RS11185	PF03099	Biotin/lipoate A/B protein ligase family
BJL90_RS11190	PF04055	Radical SAM superfamily
BJL90_RS11200	PF00056	lactate/malate dehydrogenase, NAD binding domain
BJL90_RS11200	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
BJL90_RS11205	PF01467	Cytidylyltransferase-like
BJL90_RS11210	PF03734	L,D-transpeptidase catalytic domain
BJL90_RS11210	PF01476	LysM domain
BJL90_RS11245	PF01867	CRISPR associated protein Cas1
BJL90_RS11250	PF09827	CRISPR associated protein Cas2
BJL90_RS11255	PF01713	Smr domain
BJL90_RS11255	PF00488	MutS domain V
BJL90_RS11260	PF04463	Protein of unknown function (DUF523)
BJL90_RS11265	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS11265	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS11265	PF00360	Phytochrome region
BJL90_RS11265	PF08446	PAS fold
BJL90_RS11265	PF01590	GAF domain
BJL90_RS11270	PF00672	HAMP domain
BJL90_RS11270	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS11270	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS11270	PF01627	Hpt domain
BJL90_RS11270	PF00072	Response regulator receiver domain
BJL90_RS11270	PF09984	Uncharacterised signal transduction histidine kinase domain (DUF2222)
BJL90_RS11275	PF12833	Helix-turn-helix domain
BJL90_RS11275	PF00072	Response regulator receiver domain
BJL90_RS11285	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS11295	PF12399	Branched-chain amino acid ATP-binding cassette transporter
BJL90_RS11295	PF00005	ABC transporter
BJL90_RS11300	PF00005	ABC transporter
BJL90_RS11305	PF00547	Urease, gamma subunit
BJL90_RS11310	PF00699	Urease beta subunit
BJL90_RS11315	PF01979	Amidohydrolase family
BJL90_RS11315	PF00449	Urease alpha-subunit, N-terminal domain
BJL90_RS11320	PF00750	tRNA synthetases class I (R)
BJL90_RS11320	PF05746	DALR anticodon binding domain
BJL90_RS11320	PF03485	Arginyl tRNA synthetase N terminal domain
BJL90_RS11340	PF02310	B12 binding domain
BJL90_RS11340	PF04055	Radical SAM superfamily
BJL90_RS11355	PF00994	Probable molybdopterin binding domain
BJL90_RS11355	PF02464	Competence-damaged protein
BJL90_RS11360	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
BJL90_RS11360	PF00111	2Fe-2S iron-sulfur cluster binding domain
BJL90_RS11360	PF01799	[2Fe-2S] binding domain
BJL90_RS11360	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BJL90_RS11365	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS11365	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
BJL90_RS11385	PF04055	Radical SAM superfamily
BJL90_RS11385	PF13186	Iron-sulfur cluster-binding domain
BJL90_RS11390	PF00501	AMP-binding enzyme
BJL90_RS11390	PF14535	AMP-binding enzyme C-terminal domain
BJL90_RS11395	PF13478	XdhC Rossmann domain
BJL90_RS11395	PF02625	XdhC and CoxI family
BJL90_RS11400	PF12804	MobA-like NTP transferase domain
BJL90_RS11400	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS11405	PF00300	Histidine phosphatase superfamily (branch 1)
BJL90_RS11410	PF13426	PAS domain
BJL90_RS11410	PF00158	Sigma-54 interaction domain
BJL90_RS11410	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS11415	PF01515	Phosphate acetyl/butaryl transferase
BJL90_RS11520	PF01451	Low molecular weight phosphotyrosine protein phosphatase
BJL90_RS11565	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS11565	PF00072	Response regulator receiver domain
BJL90_RS11570	PF00989	PAS fold
BJL90_RS11570	PF16736	Single Cache-like 
BJL90_RS11570	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS11570	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS11590	PF08241	Methyltransferase domain
BJL90_RS11760	PF01212	Beta-eliminating lyase
BJL90_RS11780	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
BJL90_RS11785	PF13478	XdhC Rossmann domain
BJL90_RS11785	PF02625	XdhC and CoxI family
BJL90_RS11790	PF00994	Probable molybdopterin binding domain
BJL90_RS11790	PF18146	Damage-inducible protein CinA KH domain
BJL90_RS11790	PF02464	Competence-damaged protein
BJL90_RS11800	PF01799	[2Fe-2S] binding domain
BJL90_RS11800	PF00111	2Fe-2S iron-sulfur cluster binding domain
BJL90_RS11805	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BJL90_RS11805	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
BJL90_RS11805	PF01799	[2Fe-2S] binding domain
BJL90_RS11810	PF00860	Permease family
BJL90_RS11820	PF10990	Protein of unknown function (DUF2809)
BJL90_RS11830	PF13567	Domain of unknown function (DUF4131)
BJL90_RS11830	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS11830	PF03772	Competence protein
BJL90_RS11845	PF00583	Acetyltransferase (GNAT) family
BJL90_RS11845	PF01047	MarR family
BJL90_RS11855	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS11855	PF00672	HAMP domain
BJL90_RS11855	PF02743	Cache domain
BJL90_RS11860	PF12849	PBP superfamily domain
BJL90_RS11880	PF16868	NMT1-like family
BJL90_RS11885	PF07286	Protein of unknown function (DUF1445)
BJL90_RS11895	PF03746	LamB/YcsF family
BJL90_RS11900	PF02682	Carboxyltransferase domain, subdomain C and D
BJL90_RS11905	PF02626	Carboxyltransferase domain, subdomain A and B 
BJL90_RS11910	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS11910	PF18719	ArlS sensor domain
BJL90_RS11910	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS11915	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS11915	PF00072	Response regulator receiver domain
BJL90_RS11935	PF03466	LysR substrate binding domain
BJL90_RS11935	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BJL90_RS11940	PF00390	Malic enzyme, N-terminal domain
BJL90_RS11940	PF03949	Malic enzyme, NAD binding domain
BJL90_RS11945	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS11945	PF00158	Sigma-54 interaction domain
BJL90_RS11945	PF13426	PAS domain
BJL90_RS11960	PF03313	Serine dehydratase alpha chain
BJL90_RS11965	PF01042	Endoribonuclease L-PSP
BJL90_RS11975	PF00899	ThiF family
BJL90_RS11985	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
BJL90_RS11985	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
BJL90_RS11990	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS12000	PF00939	Sodium:sulfate symporter transmembrane region
BJL90_RS12010	PF00890	FAD binding domain
BJL90_RS12020	PF01507	Phosphoadenosine phosphosulfate reductase family
BJL90_RS12025	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS12030	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
BJL90_RS12035	PF00873	AcrB/AcrD/AcrF family
BJL90_RS12040	PF12833	Helix-turn-helix domain
BJL90_RS12045	PF00561	alpha/beta hydrolase fold
BJL90_RS12050	PF07883	Cupin domain
BJL90_RS12050	PF12833	Helix-turn-helix domain
BJL90_RS12055	PF04072	Leucine carboxyl methyltransferase
BJL90_RS12065	PF04055	Radical SAM superfamily
BJL90_RS12065	PF06968	Biotin and Thiamin Synthesis associated domain
BJL90_RS12075	PF03744	6-carboxyhexanoate--CoA ligase
BJL90_RS12080	PF00155	Aminotransferase class I and II
BJL90_RS12090	PF00202	Aminotransferase class-III
BJL90_RS12100	PF00206	Lyase
BJL90_RS12100	PF14698	Argininosuccinate lyase C-terminal
BJL90_RS12105	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS12105	PF07702	UTRA domain
BJL90_RS12125	PF04055	Radical SAM superfamily
BJL90_RS12125	PF06968	Biotin and Thiamin Synthesis associated domain
BJL90_RS12155	PF01145	SPFH domain / Band 7 family
BJL90_RS12160	PF01145	SPFH domain / Band 7 family
BJL90_RS12175	PF09587	Bacterial capsule synthesis protein PGA_cap
BJL90_RS12180	PF00578	AhpC/TSA family
BJL90_RS12185	PF10417	C-terminal domain of 1-Cys peroxiredoxin
BJL90_RS12185	PF00578	AhpC/TSA family
BJL90_RS12190	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS12190	PF02743	Cache domain
BJL90_RS12190	PF00672	HAMP domain
BJL90_RS12195	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BJL90_RS12195	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BJL90_RS12195	PF02142	MGS-like domain
BJL90_RS12205	PF00293	NUDIX domain
BJL90_RS12215	PF00356	Bacterial regulatory proteins, lacI family
BJL90_RS12220	PF00294	pfkB family carbohydrate kinase
BJL90_RS12225	PF02608	ABC transporter substrate-binding protein PnrA-like
BJL90_RS12230	PF00005	ABC transporter
BJL90_RS12235	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS12240	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS12245	PF07687	Peptidase dimerisation domain
BJL90_RS12245	PF01546	Peptidase family M20/M25/M40
BJL90_RS12255	PF01546	Peptidase family M20/M25/M40
BJL90_RS12255	PF07687	Peptidase dimerisation domain
BJL90_RS12265	PF04237	YjbR
BJL90_RS12285	PF02769	AIR synthase related protein, C-terminal domain
BJL90_RS12285	PF18072	Formylglycinamide ribonucleotide amidotransferase linker domain
BJL90_RS12285	PF00586	AIR synthase related protein, N-terminal domain
BJL90_RS12290	PF08220	DeoR-like helix-turn-helix domain
BJL90_RS12290	PF00455	DeoR C terminal sensor domain
BJL90_RS12295	PF00294	pfkB family carbohydrate kinase
BJL90_RS12300	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
BJL90_RS12300	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
BJL90_RS12305	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
BJL90_RS12305	PF02378	Phosphotransferase system, EIIC 
BJL90_RS12310	PF00381	PTS HPr component phosphorylation site
BJL90_RS12315	PF05524	PEP-utilising enzyme, N-terminal
BJL90_RS12315	PF00391	PEP-utilising enzyme, mobile domain
BJL90_RS12315	PF02896	PEP-utilising enzyme, TIM barrel domain
BJL90_RS12320	PF00072	Response regulator receiver domain
BJL90_RS12320	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS12325	PF00672	HAMP domain
BJL90_RS12325	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS12325	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS12340	PF13407	Periplasmic binding protein domain
BJL90_RS12345	PF00563	EAL domain
BJL90_RS12345	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS12345	PF03707	Bacterial signalling protein N terminal repeat
BJL90_RS12350	PF04898	Glutamate synthase central domain
BJL90_RS12350	PF00310	Glutamine amidotransferases class-II
BJL90_RS12350	PF01645	Conserved region in glutamate synthase
BJL90_RS12350	PF01493	GXGXG motif
BJL90_RS12355	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS12355	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
BJL90_RS12360	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS12360	PF00072	Response regulator receiver domain
BJL90_RS12365	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS12365	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS12365	PF18698	Histidine kinase sensor domain
BJL90_RS12365	PF00989	PAS fold
BJL90_RS12365	PF00672	HAMP domain
BJL90_RS12380	PF00005	ABC transporter
BJL90_RS12395	PF13690	Chemotaxis phosphatase CheX
BJL90_RS12400	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS12400	PF03707	Bacterial signalling protein N terminal repeat
BJL90_RS12400	PF00563	EAL domain
BJL90_RS12405	PF00270	DEAD/DEAH box helicase
BJL90_RS12405	PF00271	Helicase conserved C-terminal domain
BJL90_RS12405	PF00570	HRDC domain
BJL90_RS12405	PF16124	RecQ zinc-binding
BJL90_RS12405	PF09382	RQC domain
BJL90_RS12415	PF02540	NAD synthase
BJL90_RS12440	PF12728	Helix-turn-helix domain
BJL90_RS12440	PF12727	PBP superfamily domain
BJL90_RS12450	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS12455	PF00005	ABC transporter
BJL90_RS12455	PF12857	TOBE-like domain
BJL90_RS12455	PF17850	CysA C-terminal regulatory domain
BJL90_RS12460	PF00142	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
BJL90_RS12465	PF00543	Nitrogen regulatory protein P-II
BJL90_RS12470	PF00543	Nitrogen regulatory protein P-II
BJL90_RS12475	PF00148	Nitrogenase component 1 type Oxidoreductase
BJL90_RS12480	PF00148	Nitrogenase component 1 type Oxidoreductase
BJL90_RS12485	PF00148	Nitrogenase component 1 type Oxidoreductase
BJL90_RS12490	PF00148	Nitrogenase component 1 type Oxidoreductase
BJL90_RS12495	PF04055	Radical SAM superfamily
BJL90_RS12495	PF02579	Dinitrogenase iron-molybdenum cofactor
BJL90_RS12505	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS12505	PF00672	HAMP domain
BJL90_RS12505	PF17200	Single Cache domain 2
BJL90_RS12520	PF00313	'Cold-shock' DNA-binding domain
BJL90_RS12525	PF03006	Haemolysin-III related
BJL90_RS12535	PF00884	Sulfatase
BJL90_RS12545	PF00375	Sodium:dicarboxylate symporter family
BJL90_RS12550	PF01513	ATP-NAD kinase
BJL90_RS12555	PF00849	RNA pseudouridylate synthase
BJL90_RS12565	PF00395	S-layer homology domain
BJL90_RS12565	PF00963	Cohesin domain
BJL90_RS12570	PF06452	Carbohydrate family 9 binding domain-like
BJL90_RS12570	PF02018	Carbohydrate binding domain
BJL90_RS12570	PF00331	Glycosyl hydrolase family 10
BJL90_RS12570	PF00395	S-layer homology domain
BJL90_RS12595	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS12595	PF01434	Peptidase family M41
BJL90_RS12595	PF17862	AAA+ lid domain
BJL90_RS12610	PF00994	Probable molybdopterin binding domain
BJL90_RS12610	PF03453	MoeA N-terminal region (domain I and II)
BJL90_RS12610	PF03454	MoeA C-terminal region (domain IV)
BJL90_RS12615	PF00994	Probable molybdopterin binding domain
BJL90_RS12615	PF03454	MoeA C-terminal region (domain IV)
BJL90_RS12615	PF03453	MoeA N-terminal region (domain I and II)
BJL90_RS12625	PF02811	PHP domain
BJL90_RS12625	PF14716	Helix-hairpin-helix domain
BJL90_RS12625	PF14791	DNA polymerase beta thumb 
BJL90_RS12630	PF01943	Polysaccharide biosynthesis protein
BJL90_RS12630	PF14667	Polysaccharide biosynthesis C-terminal domain
BJL90_RS12635	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS12635	PF08448	PAS fold
BJL90_RS12660	PF00664	ABC transporter transmembrane region
BJL90_RS12660	PF00005	ABC transporter
BJL90_RS12665	PF00005	ABC transporter
BJL90_RS12665	PF00664	ABC transporter transmembrane region
BJL90_RS12675	PF00155	Aminotransferase class I and II
BJL90_RS12680	PF00781	Diacylglycerol kinase catalytic domain
BJL90_RS12685	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS12695	PF00221	Aromatic amino acid lyase
BJL90_RS12715	PF05384	Sensor protein DegS
BJL90_RS12715	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS12715	PF07730	Histidine kinase
BJL90_RS12720	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS12720	PF00072	Response regulator receiver domain
BJL90_RS12725	PF02645	Uncharacterised protein, DegV family COG1307
BJL90_RS12730	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BJL90_RS12730	PF03466	LysR substrate binding domain
BJL90_RS12735	PF01545	Cation efflux family
BJL90_RS12735	PF16916	Dimerisation domain of Zinc Transporter
BJL90_RS12775	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin
BJL90_RS12775	PF18277	AbrB C-terminal domain
BJL90_RS12810	PF04545	Sigma-70, region 4
BJL90_RS12810	PF04542	Sigma-70 region 2 
BJL90_RS12860	PF00574	Clp protease
BJL90_RS12930	PF04865	Baseplate J-like protein
BJL90_RS12960	PF10960	BhlA holin family
BJL90_RS12965	PF01520	N-acetylmuramoyl-L-alanine amidase
BJL90_RS13020	PF08281	Sigma-70, region 4
BJL90_RS13020	PF04542	Sigma-70 region 2 
BJL90_RS13035	PF01367	5'-3' exonuclease, C-terminal SAM fold
BJL90_RS13035	PF00476	DNA polymerase family A
BJL90_RS13035	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
BJL90_RS13040	PF01121	Dephospho-CoA kinase
BJL90_RS13045	PF01464	Transglycosylase SLT domain
BJL90_RS13045	PF11873	Membrane-bound lytic murein transglycosylase C, N-terminal domain
BJL90_RS13050	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS13065	PF01695	IstB-like ATP binding protein
BJL90_RS13075	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS13080	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS13090	PF01894	Uncharacterised protein family UPF0047
BJL90_RS13155	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS13155	PF00589	Phage integrase family
BJL90_RS13210	PF13302	Acetyltransferase (GNAT) domain
BJL90_RS13240	PF13817	IS66 C-terminal element
BJL90_RS13240	PF13007	Transposase C of IS166 homeodomain
BJL90_RS13240	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS13240	PF03050	Transposase IS66 family 
BJL90_RS13250	PF13307	Helicase C-terminal domain
BJL90_RS13250	PF06733	DEAD_2
BJL90_RS13280	PF07556	Protein of unknown function (DUF1538)
BJL90_RS13285	PF01553	Acyltransferase
BJL90_RS13285	PF00501	AMP-binding enzyme
BJL90_RS13295	PF02639	Uncharacterized BCR, YaiI/YqxD family COG1671
BJL90_RS13365	PF00710	Asparaginase, N-terminal
BJL90_RS13365	PF17763	Glutaminase/Asparaginase C-terminal domain
BJL90_RS13375	PF00266	Aminotransferase class-V
BJL90_RS13380	PF02926	THUMP domain
BJL90_RS13380	PF02568	Thiamine biosynthesis protein (ThiI)
BJL90_RS13385	PF01967	MoaC family
BJL90_RS13390	PF00994	Probable molybdopterin binding domain
BJL90_RS13395	PF04055	Radical SAM superfamily
BJL90_RS13400	PF01228	Glycine radical
BJL90_RS13400	PF02901	Pyruvate formate lyase-like
BJL90_RS13405	PF01740	STAS domain
BJL90_RS13410	PF13581	Histidine kinase-like ATPase domain
BJL90_RS13415	PF04542	Sigma-70 region 2 
BJL90_RS13415	PF04545	Sigma-70, region 4
BJL90_RS13415	PF04539	Sigma-70 region 3
BJL90_RS13420	PF12164	Stage V sporulation protein AA
BJL90_RS13425	PF13782	Stage V sporulation protein AB
BJL90_RS13430	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BJL90_RS13435	PF07451	Stage V sporulation protein AD (SpoVAD)
BJL90_RS13440	PF03862	SpoVAC/SpoVAEB sporulation membrane protein
BJL90_RS13445	PF14097	Stage V sporulation protein AE1
BJL90_RS13450	PF00912	Transglycosylase
BJL90_RS13450	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS13460	PF00239	Resolvase, N terminal domain
BJL90_RS13460	PF02796	Helix-turn-helix domain of resolvase
BJL90_RS13475	PF13817	IS66 C-terminal element
BJL90_RS13475	PF13007	Transposase C of IS166 homeodomain
BJL90_RS13475	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS13475	PF03050	Transposase IS66 family 
BJL90_RS13525	PF01381	Helix-turn-helix
BJL90_RS13580	PF11962	Peptidase_G2, IMC autoproteolytic cleavage domain
BJL90_RS13580	PF12708	Pectate lyase superfamily protein
BJL90_RS13585	PF10960	BhlA holin family
BJL90_RS13695	PF00269	Small, acid-soluble spore proteins, alpha/beta type
BJL90_RS13710	PF12833	Helix-turn-helix domain
BJL90_RS13715	PF16360	GTP-binding GTPase Middle Region
BJL90_RS13715	PF01926	50S ribosome-binding GTPase
BJL90_RS13715	PF13167	GTP-binding GTPase N-terminal
BJL90_RS13725	PF09186	Domain of unknown function (DUF1949)
BJL90_RS13725	PF01205	Uncharacterized protein family UPF0029
BJL90_RS13740	PF01925	Sulfite exporter TauE/SafE
BJL90_RS13745	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS13750	PF02540	NAD synthase
BJL90_RS13755	PF01709	Transcriptional regulator
BJL90_RS13760	PF04073	Aminoacyl-tRNA editing domain
BJL90_RS13765	PF00704	Glycosyl hydrolases family 18
BJL90_RS13775	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS13780	PF13520	Amino acid permease
BJL90_RS13785	PF00202	Aminotransferase class-III
BJL90_RS13790	PF13556	PucR C-terminal helix-turn-helix domain
BJL90_RS13790	PF17853	GGDEF-like domain
BJL90_RS13810	PF03063	Prismane/CO dehydrogenase family
BJL90_RS13820	PF04324	BFD-like [2Fe-2S] binding domain
BJL90_RS13820	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
BJL90_RS13820	PF18267	Rubredoxin NAD+ reductase C-terminal domain
BJL90_RS13820	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS13825	PF02664	S-Ribosylhomocysteinase (LuxS)
BJL90_RS13830	PF00877	NlpC/P60 family
BJL90_RS13835	PF01464	Transglycosylase SLT domain
BJL90_RS13865	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS13865	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS13870	PF13237	4Fe-4S dicluster domain
BJL90_RS13870	PF13375	RnfC Barrel sandwich hybrid domain
BJL90_RS13870	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS13870	PF10531	SLBB domain
BJL90_RS13875	PF03116	NQR2, RnfD, RnfE family
BJL90_RS13880	PF04205	FMN-binding domain
BJL90_RS13885	PF02508	Rnf-Nqr subunit, membrane protein
BJL90_RS13890	PF02508	Rnf-Nqr subunit, membrane protein
BJL90_RS13895	PF00037	4Fe-4S binding domain
BJL90_RS13895	PF04060	Putative Fe-S cluster
BJL90_RS13895	PF13187	4Fe-4S dicluster domain
BJL90_RS13910	PF02545	Maf-like protein
BJL90_RS13915	PF04002	RadC-like JAB domain
BJL90_RS13935	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS13935	PF03717	Penicillin-binding Protein dimerisation domain
BJL90_RS13940	PF03775	Septum formation inhibitor MinC, C-terminal domain
BJL90_RS13945	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
BJL90_RS13950	PF03776	Septum formation topological specificity factor MinE
BJL90_RS13955	PF02142	MGS-like domain
BJL90_RS13965	PF02163	Peptidase family M50
BJL90_RS13980	PF00575	S1 RNA binding domain
BJL90_RS13980	PF10150	Ribonuclease E/G family
BJL90_RS13985	PF00829	Ribosomal prokaryotic L21 protein
BJL90_RS13995	PF01016	Ribosomal L27 protein
BJL90_RS14000	PF01926	50S ribosome-binding GTPase
BJL90_RS14000	PF09269	Domain of unknown function (DUF1967)
BJL90_RS14000	PF01018	GTP1/OBG
BJL90_RS14015	PF03060	Nitronate monooxygenase
BJL90_RS14020	PF01467	Cytidylyltransferase-like
BJL90_RS14025	PF01966	HD domain
BJL90_RS14030	PF03816	Cell envelope-related transcriptional attenuator domain
BJL90_RS14035	PF01699	Sodium/calcium exchanger protein
BJL90_RS14045	PF09334	tRNA synthetases class I (M)
BJL90_RS14045	PF00133	tRNA synthetases class I (I, L, M and V)
BJL90_RS14045	PF13603	Leucyl-tRNA synthetase, Domain 2
BJL90_RS14045	PF08264	Anticodon-binding domain of tRNA
BJL90_RS14055	PF01042	Endoribonuclease L-PSP
BJL90_RS14060	PF01842	ACT domain
BJL90_RS14060	PF03315	Serine dehydratase beta chain
BJL90_RS14065	PF03313	Serine dehydratase alpha chain
BJL90_RS14070	PF00768	D-alanyl-D-alanine carboxypeptidase
BJL90_RS14070	PF07943	Penicillin-binding protein 5, C-terminal domain
BJL90_RS14080	PF02769	AIR synthase related protein, C-terminal domain
BJL90_RS14080	PF00586	AIR synthase related protein, N-terminal domain
BJL90_RS14085	PF01235	Sodium:alanine symporter family
BJL90_RS14090	PF03841	L-seryl-tRNA selenium transferase
BJL90_RS14090	PF12390	Selenocysteine synthase N terminal
BJL90_RS14095	PF09106	Elongation factor SelB, winged helix 
BJL90_RS14095	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS14095	PF09105	Elongation factor SelB, winged helix 
BJL90_RS14095	PF09107	Elongation factor SelB, winged helix 
BJL90_RS14095	PF03144	Elongation factor Tu domain 2
BJL90_RS14105	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS14105	PF00589	Phage integrase family
BJL90_RS14170	PF01695	IstB-like ATP binding protein
BJL90_RS14210	PF01844	HNH endonuclease
BJL90_RS14225	PF03354	Phage Terminase 
BJL90_RS14320	PF10960	BhlA holin family
BJL90_RS14335	PF01327	Polypeptide deformylase
BJL90_RS14350	PF04070	Domain of unknown function (DUF378)
BJL90_RS14360	PF02075	Crossover junction endodeoxyribonuclease RuvC
BJL90_RS14365	PF01330	RuvA N terminal domain
BJL90_RS14365	PF07499	RuvA, C-terminal domain
BJL90_RS14370	PF17864	RuvB AAA lid domain
BJL90_RS14370	PF05491	RuvB C-terminal winged helix domain
BJL90_RS14370	PF05496	Holliday junction DNA helicase RuvB P-loop domain
BJL90_RS14375	PF11146	Protein of unknown function (DUF2905)
BJL90_RS14380	PF04122	Putative cell wall binding repeat 2
BJL90_RS14380	PF08486	Stage II sporulation protein
BJL90_RS14385	PF02547	Queuosine biosynthesis protein
BJL90_RS14390	PF01702	Queuine tRNA-ribosyltransferase
BJL90_RS14395	PF02699	Preprotein translocase subunit
BJL90_RS14410	PF04055	Radical SAM superfamily
BJL90_RS14415	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS14420	PF02355	Protein export membrane protein
BJL90_RS14420	PF07549	SecD/SecF GG Motif
BJL90_RS14425	PF07549	SecD/SecF GG Motif
BJL90_RS14425	PF02355	Protein export membrane protein
BJL90_RS14430	PF03109	ABC1 family
BJL90_RS14435	PF01368	DHH family
BJL90_RS14435	PF02272	DHHA1 domain
BJL90_RS14435	PF17768	RecJ OB domain
BJL90_RS14435	PF10141	Single-strand DNA-specific exonuclease, C terminal domain
BJL90_RS14440	PF00156	Phosphoribosyl transferase domain
BJL90_RS14445	PF13291	ACT domain
BJL90_RS14445	PF04607	Region found in RelA / SpoT proteins
BJL90_RS14445	PF02824	TGS domain
BJL90_RS14450	PF02580	D-Tyr-tRNA(Tyr) deacylase
BJL90_RS14455	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS14460	PF04055	Radical SAM superfamily
BJL90_RS14465	PF00152	tRNA synthetases class II (D, K and N) 
BJL90_RS14465	PF02938	GAD domain
BJL90_RS14465	PF01336	OB-fold nucleic acid binding domain
BJL90_RS14470	PF00963	Cohesin domain
BJL90_RS14470	PF00395	S-layer homology domain
BJL90_RS14480	PF00899	ThiF family
BJL90_RS14500	PF00464	Serine hydroxymethyltransferase
BJL90_RS14505	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS14505	PF13426	PAS domain
BJL90_RS14505	PF00158	Sigma-54 interaction domain
BJL90_RS14525	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS14530	PF16552	D-ornithine 4,5-aminomutase alpha-subunit
BJL90_RS14535	PF02310	B12 binding domain
BJL90_RS14535	PF09043	D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit
BJL90_RS14535	PF16554	Dimerisation domain of d-ornithine 4,5-aminomutase
BJL90_RS14540	PF13941	MutL protein
BJL90_RS14545	PF01168	Alanine racemase, N-terminal domain
BJL90_RS14575	PF16193	AAA C-terminal domain
BJL90_RS14575	PF05496	Holliday junction DNA helicase RuvB P-loop domain
BJL90_RS14575	PF12002	MgsA AAA+ ATPase C terminal
BJL90_RS14600	PF00188	Cysteine-rich secretory protein family
BJL90_RS14615	PF04321	RmlD substrate binding domain
BJL90_RS14620	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
BJL90_RS14620	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
BJL90_RS14620	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
BJL90_RS14640	PF00483	Nucleotidyl transferase
BJL90_RS14645	PF16363	GDP-mannose 4,6 dehydratase
BJL90_RS14650	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
BJL90_RS14695	PF02082	Transcriptional regulator
BJL90_RS14700	PF00266	Aminotransferase class-V
BJL90_RS14705	PF01592	NifU-like N terminal domain
BJL90_RS14720	PF01594	AI-2E family transporter
BJL90_RS14725	PF01411	tRNA synthetases class II (A)
BJL90_RS14725	PF02272	DHHA1 domain
BJL90_RS14725	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BJL90_RS14730	PF06135	IreB regulatory phosphoprotein
BJL90_RS14740	PF00248	Aldo/keto reductase family
BJL90_RS14745	PF03652	Holliday junction resolvase
BJL90_RS14750	PF06949	Protein of unknown function (DUF1292)
BJL90_RS14760	PF03749	Sugar fermentation stimulation protein RE domain
BJL90_RS14760	PF17746	SfsA N-terminal OB domain
BJL90_RS14765	PF01475	Ferric uptake regulator family
BJL90_RS14770	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain
BJL90_RS14770	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS14770	PF17770	Ribonuclease J C-terminal domain
BJL90_RS14785	PF06133	Control of competence regulator ComK, YlbF/YmcA
BJL90_RS14795	PF07690	Major Facilitator Superfamily
BJL90_RS14800	PF05257	CHAP domain
BJL90_RS14800	PF01476	LysM domain
BJL90_RS14810	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS14810	PF01348	Type II intron maturase
BJL90_RS14830	PF13411	MerR HTH family regulatory protein
BJL90_RS14830	PF06445	GyrI-like small molecule binding domain
BJL90_RS14840	PF01625	Peptide methionine sulfoxide reductase
BJL90_RS14875	PF12833	Helix-turn-helix domain
BJL90_RS14885	PF01625	Peptide methionine sulfoxide reductase
BJL90_RS14890	PF00989	PAS fold
BJL90_RS14890	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS14890	PF16736	Single Cache-like 
BJL90_RS14890	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS14905	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS14905	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS14905	PF00497	Bacterial extracellular solute-binding proteins, family 3
BJL90_RS14910	PF00072	Response regulator receiver domain
BJL90_RS14910	PF00158	Sigma-54 interaction domain
BJL90_RS14910	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS14915	PF00158	Sigma-54 interaction domain
BJL90_RS14915	PF00072	Response regulator receiver domain
BJL90_RS14915	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS14920	PF13188	PAS domain
BJL90_RS14920	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS14920	PF00072	Response regulator receiver domain
BJL90_RS14920	PF08448	PAS fold
BJL90_RS14920	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS14925	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS14930	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS14935	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS14935	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS14940	PF00005	ABC transporter
BJL90_RS14945	PF00005	ABC transporter
BJL90_RS14950	PF02743	Cache domain
BJL90_RS14950	PF00672	HAMP domain
BJL90_RS14950	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS14950	PF06580	Histidine kinase
BJL90_RS14955	PF00072	Response regulator receiver domain
BJL90_RS14955	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS14960	PF01596	O-methyltransferase
BJL90_RS14965	PF16325	Peptidase family U32 C-terminal domain
BJL90_RS14965	PF01136	Peptidase family U32
BJL90_RS14970	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS14970	PF03717	Penicillin-binding Protein dimerisation domain
BJL90_RS14975	PF04545	Sigma-70, region 4
BJL90_RS14975	PF04542	Sigma-70 region 2 
BJL90_RS14990	PF18317	Shikimate 5'-dehydrogenase C-terminal domain
BJL90_RS14990	PF08501	Shikimate dehydrogenase substrate binding domain
BJL90_RS14990	PF01488	Shikimate / quinate 5-dehydrogenase
BJL90_RS14995	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
BJL90_RS14995	PF00437	Type II/IV secretion system protein
BJL90_RS15000	PF00437	Type II/IV secretion system protein
BJL90_RS15005	PF00482	Type II secretion system (T2SS), protein F
BJL90_RS15010	PF07963	Prokaryotic N-terminal methylation motif
BJL90_RS15030	PF06750	Bacterial Peptidase A24 N-terminal domain
BJL90_RS15030	PF01478	Type IV leader peptidase family
BJL90_RS15080	PF01220	Dehydroquinase class II
BJL90_RS15085	PF01321	Creatinase/Prolidase N-terminal domain
BJL90_RS15085	PF00557	Metallopeptidase family M24
BJL90_RS15090	PF09285	Elongation factor P, C-terminal
BJL90_RS15090	PF08207	Elongation factor P (EF-P) KOW-like domain
BJL90_RS15090	PF01132	Elongation factor P (EF-P) OB domain
BJL90_RS15110	PF06686	Stage III sporulation protein AC/AD protein family
BJL90_RS15115	PF06686	Stage III sporulation protein AC/AD protein family
BJL90_RS15120	PF09546	Stage III sporulation protein AE (spore_III_AE)
BJL90_RS15140	PF03780	Asp23 family, cell envelope-related function
BJL90_RS15145	PF01029	NusB family
BJL90_RS15150	PF00814	Glycoprotease family
BJL90_RS15155	PF02601	Exonuclease VII, large subunit
BJL90_RS15155	PF13742	OB-fold nucleic acid binding domain
BJL90_RS15160	PF02609	Exonuclease VII small subunit
BJL90_RS15165	PF00348	Polyprenyl synthetase
BJL90_RS15170	PF02681	Divergent PAP2 family
BJL90_RS15185	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
BJL90_RS15185	PF02779	Transketolase, pyrimidine binding domain
BJL90_RS15185	PF02780	Transketolase, C-terminal domain
BJL90_RS15190	PF01479	S4 domain
BJL90_RS15190	PF01728	FtsJ-like methyltransferase
BJL90_RS15195	PF01316	Arginine repressor, DNA binding domain
BJL90_RS15195	PF02863	Arginine repressor, C-terminal domain
BJL90_RS15200	PF13476	AAA domain
BJL90_RS15205	PF17820	PDZ domain
BJL90_RS15205	PF05580	SpoIVB peptidase S55
BJL90_RS15210	PF08769	Sporulation initiation factor Spo0A C terminal
BJL90_RS15210	PF00072	Response regulator receiver domain
BJL90_RS15225	PF02631	RecX family
BJL90_RS15240	PF00535	Glycosyl transferase family 2
BJL90_RS15255	PF00293	NUDIX domain
BJL90_RS15260	PF01944	Stage II sporulation protein M
BJL90_RS15265	PF00589	Phage integrase family
BJL90_RS15265	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS15270	PF01676	Metalloenzyme superfamily
BJL90_RS15275	PF01048	Phosphorylase superfamily
BJL90_RS15280	PF01048	Phosphorylase superfamily
BJL90_RS15285	PF02885	Glycosyl transferase family, helical bundle domain
BJL90_RS15285	PF00591	Glycosyl transferase family, a/b domain
BJL90_RS15285	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
BJL90_RS15290	PF07943	Penicillin-binding protein 5, C-terminal domain
BJL90_RS15290	PF00768	D-alanyl-D-alanine carboxypeptidase
BJL90_RS15295	PF12627	Probable RNA and SrmB- binding site of polymerase A
BJL90_RS15295	PF02272	DHHA1 domain
BJL90_RS15295	PF01368	DHH family
BJL90_RS15295	PF00571	CBS domain
BJL90_RS15295	PF01743	Poly A polymerase head domain
BJL90_RS15300	PF02163	Peptidase family M50
BJL90_RS15305	PF02616	Segregation and condensation protein ScpA
BJL90_RS15310	PF04079	Segregation and condensation complex subunit ScpB
BJL90_RS15315	PF02675	S-adenosylmethionine decarboxylase 
BJL90_RS15325	PF09579	Sporulation protein YtfJ (Spore_YtfJ)
BJL90_RS15335	PF00768	D-alanyl-D-alanine carboxypeptidase
BJL90_RS15335	PF07943	Penicillin-binding protein 5, C-terminal domain
BJL90_RS15345	PF01134	Glucose inhibited division protein A
BJL90_RS15345	PF13932	GidA associated domain
BJL90_RS15355	PF13533	Biotin-lipoyl like
BJL90_RS15360	PF00873	AcrB/AcrD/AcrF family
BJL90_RS15365	PF03851	UV-endonuclease UvdE
BJL90_RS15370	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS15370	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS15370	PF00072	Response regulator receiver domain
BJL90_RS15370	PF01627	Hpt domain
BJL90_RS15370	PF00497	Bacterial extracellular solute-binding proteins, family 3
BJL90_RS15375	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS15375	PF00072	Response regulator receiver domain
BJL90_RS15380	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS15380	PF01590	GAF domain
BJL90_RS15380	PF00158	Sigma-54 interaction domain
BJL90_RS15395	PF03989	DNA gyrase C-terminal domain, beta-propeller
BJL90_RS15395	PF00521	DNA gyrase/topoisomerase IV, subunit A
BJL90_RS15400	PF01751	Toprim domain
BJL90_RS15400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS15400	PF00204	DNA gyrase B
BJL90_RS15400	PF00986	DNA gyrase B subunit, carboxyl terminus
BJL90_RS15405	PF03812	2-keto-3-deoxygluconate permease
BJL90_RS15410	PF04295	D-galactarate dehydratase / Altronate hydrolase, C terminus
BJL90_RS15410	PF08666	SAF domain
BJL90_RS15415	PF08666	SAF domain
BJL90_RS15415	PF04295	D-galactarate dehydratase / Altronate hydrolase, C terminus
BJL90_RS15420	PF00989	PAS fold
BJL90_RS15420	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS15420	PF00158	Sigma-54 interaction domain
BJL90_RS15425	PF01497	Periplasmic binding protein
BJL90_RS15430	PF00005	ABC transporter
BJL90_RS15435	PF01032	FecCD transport family
BJL90_RS15440	PF01032	FecCD transport family
BJL90_RS15445	PF12833	Helix-turn-helix domain
BJL90_RS15445	PF12852	Cupin
BJL90_RS15455	PF00654	Voltage gated chloride channel
BJL90_RS15460	PF04239	Protein of unknown function (DUF421)
BJL90_RS15465	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS15475	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
BJL90_RS15475	PF13237	4Fe-4S dicluster domain
BJL90_RS15475	PF13375	RnfC Barrel sandwich hybrid domain
BJL90_RS15475	PF10531	SLBB domain
BJL90_RS15480	PF03319	Ethanolamine utilisation protein EutN/carboxysome
BJL90_RS15485	PF00171	Aldehyde dehydrogenase family
BJL90_RS15485	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS15500	PF06130	Phosphate propanoyltransferase
BJL90_RS15510	PF00936	BMC domain
BJL90_RS15515	PF00936	BMC domain
BJL90_RS15520	PF00672	HAMP domain
BJL90_RS15520	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS15520	PF02743	Cache domain
BJL90_RS15520	PF06580	Histidine kinase
BJL90_RS15525	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS15525	PF00072	Response regulator receiver domain
BJL90_RS15530	PF04055	Radical SAM superfamily
BJL90_RS15535	PF01228	Glycine radical
BJL90_RS15535	PF02901	Pyruvate formate lyase-like
BJL90_RS15540	PF13732	Domain of unknown function (DUF4162)
BJL90_RS15540	PF00005	ABC transporter
BJL90_RS15550	PF00672	HAMP domain
BJL90_RS15550	PF00989	PAS fold
BJL90_RS15550	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS15550	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS15550	PF18698	Histidine kinase sensor domain
BJL90_RS15555	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS15555	PF00072	Response regulator receiver domain
BJL90_RS15560	PF00005	ABC transporter
BJL90_RS15570	PF00005	ABC transporter
BJL90_RS15570	PF02687	FtsX-like permease family
BJL90_RS15570	PF12704	MacB-like periplasmic core domain
BJL90_RS15575	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
BJL90_RS15585	PF00005	ABC transporter
BJL90_RS15590	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS15600	PF00589	Phage integrase family
BJL90_RS15620	PF13700	Domain of unknown function (DUF4158)
BJL90_RS15620	PF01526	Tn3 transposase DDE domain
BJL90_RS15625	PF00589	Phage integrase family
BJL90_RS15625	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS15645	PF00589	Phage integrase family
BJL90_RS15665	PF02310	B12 binding domain
BJL90_RS15665	PF04055	Radical SAM superfamily
BJL90_RS15670	PF04055	Radical SAM superfamily
BJL90_RS15670	PF02310	B12 binding domain
BJL90_RS15680	PF02277	Phosphoribosyltransferase
BJL90_RS15685	PF01964	Radical SAM ThiC family
BJL90_RS15690	PF01964	Radical SAM ThiC family
BJL90_RS15695	PF02899	Phage integrase, N-terminal SAM-like domain
BJL90_RS15695	PF00589	Phage integrase family
BJL90_RS15700	PF01726	LexA DNA binding domain
BJL90_RS15700	PF00717	Peptidase S24-like
BJL90_RS15705	PF06838	Methionine gamma-lyase 
BJL90_RS15720	PF01926	50S ribosome-binding GTPase
BJL90_RS15720	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
BJL90_RS15725	PF17866	AAA lid domain
BJL90_RS15725	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS15730	PF17209	Hfq protein
BJL90_RS15740	PF08676	MutL C terminal dimerisation domain
BJL90_RS15740	PF01119	DNA mismatch repair protein, C-terminal domain
BJL90_RS15745	PF00488	MutS domain V
BJL90_RS15745	PF05188	MutS domain II
BJL90_RS15745	PF05192	MutS domain III
BJL90_RS15745	PF01624	MutS domain I
BJL90_RS15745	PF05190	MutS family domain IV
BJL90_RS15750	PF00919	Uncharacterized protein family UPF0004
BJL90_RS15750	PF04055	Radical SAM superfamily
BJL90_RS15750	PF01938	TRAM domain
BJL90_RS15810	PF04865	Baseplate J-like protein
BJL90_RS15910	PF10668	Phage terminase small subunit
BJL90_RS15965	PF00145	C-5 cytosine-specific DNA methylase
BJL90_RS16030	PF13476	AAA domain
BJL90_RS16060	PF01726	LexA DNA binding domain
BJL90_RS16060	PF00717	Peptidase S24-like
BJL90_RS16075	PF07508	Recombinase
BJL90_RS16075	PF00239	Resolvase, N terminal domain
BJL90_RS16075	PF13408	Recombinase zinc beta ribbon domain
BJL90_RS16080	PF01966	HD domain
BJL90_RS16085	PF01255	Putative undecaprenyl diphosphate synthase
BJL90_RS16090	PF00155	Aminotransferase class I and II
BJL90_RS16095	PF13411	MerR HTH family regulatory protein
BJL90_RS16100	PF05343	M42 glutamyl aminopeptidase
BJL90_RS16105	PF05343	M42 glutamyl aminopeptidase
BJL90_RS16110	PF05343	M42 glutamyl aminopeptidase
BJL90_RS16115	PF01739	CheR methyltransferase, SAM binding domain
BJL90_RS16115	PF03705	CheR methyltransferase, all-alpha domain
BJL90_RS16120	PF02401	LytB protein
BJL90_RS16120	PF00575	S1 RNA binding domain
BJL90_RS16125	PF02401	LytB protein
BJL90_RS16130	PF02224	Cytidylate kinase
BJL90_RS16140	PF00300	Histidine phosphatase superfamily (branch 1)
BJL90_RS16145	PF01380	SIS domain
BJL90_RS16145	PF01418	Helix-turn-helix domain, rpiR family
BJL90_RS16150	PF01975	Survival protein SurE
BJL90_RS16160	PF02436	Conserved carboxylase domain
BJL90_RS16160	PF00364	Biotin-requiring enzyme
BJL90_RS16160	PF00682	HMGL-like
BJL90_RS16165	PF06962	Putative rRNA methylase
BJL90_RS16175	PF00849	RNA pseudouridylate synthase
BJL90_RS16175	PF01479	S4 domain
BJL90_RS16180	PF01336	OB-fold nucleic acid binding domain
BJL90_RS16180	PF00152	tRNA synthetases class II (D, K and N) 
BJL90_RS16190	PF00155	Aminotransferase class I and II
BJL90_RS16200	PF02811	PHP domain
BJL90_RS16205	PF04232	Stage V sporulation protein S (SpoVS)
BJL90_RS16210	PF12072	Domain of unknown function (DUF3552)
BJL90_RS16210	PF00013	KH domain
BJL90_RS16210	PF01966	HD domain
BJL90_RS16215	PF00154	recA bacterial DNA recombination protein
BJL90_RS16220	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS16220	PF01348	Type II intron maturase
BJL90_RS16225	PF00154	recA bacterial DNA recombination protein
BJL90_RS16230	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS16245	PF00154	recA bacterial DNA recombination protein
BJL90_RS16250	PF01066	CDP-alcohol phosphatidyltransferase
BJL90_RS16255	PF00919	Uncharacterized protein family UPF0004
BJL90_RS16255	PF18693	TRAM domain
BJL90_RS16255	PF04055	Radical SAM superfamily
BJL90_RS16265	PF09397	Ftsk gamma domain
BJL90_RS16265	PF01580	FtsK/SpoIIIE family
BJL90_RS16265	PF17854	FtsK alpha domain
BJL90_RS16270	PF00574	Clp protease
BJL90_RS16280	PF00675	Insulinase (Peptidase family M16)
BJL90_RS16280	PF05193	Peptidase M16 inactive domain
BJL90_RS16290	PF00013	KH domain
BJL90_RS16290	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
BJL90_RS16290	PF01138	3' exoribonuclease family, domain 1
BJL90_RS16290	PF00575	S1 RNA binding domain
BJL90_RS16290	PF03725	3' exoribonuclease family, domain 2
BJL90_RS16295	PF00312	Ribosomal protein S15
BJL90_RS16300	PF06574	FAD synthetase
BJL90_RS16300	PF01687	Riboflavin kinase
BJL90_RS16305	PF16198	tRNA pseudouridylate synthase B C-terminal domain
BJL90_RS16305	PF01509	TruB family pseudouridylate synthase (N terminal domain)
BJL90_RS16315	PF02033	Ribosome-binding factor A
BJL90_RS16320	PF04760	Translation initiation factor IF-2, N-terminal region
BJL90_RS16320	PF11987	Translation-initiation factor 2
BJL90_RS16320	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS16325	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
BJL90_RS16330	PF04296	Protein of unknown function (DUF448)
BJL90_RS16335	PF13184	NusA-like KH domain
BJL90_RS16335	PF00575	S1 RNA binding domain
BJL90_RS16335	PF08529	NusA N-terminal domain
BJL90_RS16340	PF02576	RimP N-terminal domain
BJL90_RS16340	PF17384	RimP C-terminal SH3 domain
BJL90_RS16345	PF07733	Bacterial DNA polymerase III alpha NTPase domain
BJL90_RS16345	PF17657	Bacterial DNA polymerase III alpha subunit finger domain
BJL90_RS16345	PF14579	Helix-hairpin-helix motif
BJL90_RS16345	PF02811	PHP domain
BJL90_RS16345	PF00929	Exonuclease
BJL90_RS16345	PF01336	OB-fold nucleic acid binding domain
BJL90_RS16345	PF11490	DNA polymerase III polC-type N-terminus II
BJL90_RS16350	PF00535	Glycosyl transferase family 2
BJL90_RS16355	PF04551	GcpE protein
BJL90_RS16360	PF02163	Peptidase family M50
BJL90_RS16360	PF17820	PDZ domain
BJL90_RS16365	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
BJL90_RS16365	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
BJL90_RS16365	PF13288	DXP reductoisomerase C-terminal domain
BJL90_RS16375	PF01255	Putative undecaprenyl diphosphate synthase
BJL90_RS16385	PF01765	Ribosome recycling factor
BJL90_RS16390	PF00696	Amino acid kinase family
BJL90_RS16395	PF00889	Elongation factor TS
BJL90_RS16400	PF00318	Ribosomal protein S2
BJL90_RS16425	PF04542	Sigma-70 region 2 
BJL90_RS16425	PF04539	Sigma-70 region 3
BJL90_RS16425	PF04545	Sigma-70, region 4
BJL90_RS16430	PF03975	CheD chemotactic sensory transduction
BJL90_RS16435	PF04509	CheC-like family
BJL90_RS16440	PF01584	CheW-like domain
BJL90_RS16445	PF01584	CheW-like domain
BJL90_RS16445	PF07194	P2 response regulator binding domain
BJL90_RS16445	PF01627	Hpt domain
BJL90_RS16445	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS16445	PF02895	Signal transducing histidine kinase, homodimeric domain
BJL90_RS16450	PF01339	CheB methylesterase
BJL90_RS16450	PF00072	Response regulator receiver domain
BJL90_RS16460	PF10609	NUBPL iron-transfer P-loop NTPase
BJL90_RS16465	PF00448	SRP54-type protein, GTPase domain
BJL90_RS16470	PF00771	FHIPEP family
BJL90_RS16475	PF01312	FlhB HrpN YscU SpaS Family
BJL90_RS16480	PF01311	Bacterial export proteins, family 1
BJL90_RS16485	PF01313	Bacterial export proteins, family 3
BJL90_RS16490	PF00813	FliP family
BJL90_RS16500	PF00072	Response regulator receiver domain
BJL90_RS16505	PF04509	CheC-like family
BJL90_RS16505	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
BJL90_RS16510	PF01052	Type III flagellar switch regulator (C-ring) FliN C-term
BJL90_RS16510	PF02154	Flagellar motor switch protein FliM
BJL90_RS16520	PF00691	OmpA family
BJL90_RS16520	PF13677	Membrane MotB of proton-channel complex MotA/MotB 
BJL90_RS16525	PF01618	MotA/TolQ/ExbB proton channel family
BJL90_RS16535	PF00460	Flagella basal body rod protein
BJL90_RS16535	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BJL90_RS16535	PF07559	Flagellar basal body protein FlaE
BJL90_RS16545	PF03963	Flagellar hook capping protein - N-terminal region
BJL90_RS16565	PF18269	T3SS EscN ATPase C-terminal domain
BJL90_RS16565	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
BJL90_RS16565	PF02874	ATP synthase alpha/beta family, beta-barrel domain
BJL90_RS16575	PF14842	FliG N-terminal domain
BJL90_RS16575	PF01706	FliG C-terminal domain
BJL90_RS16575	PF14841	FliG middle domain
BJL90_RS16580	PF01514	Secretory protein of YscJ/FliF family
BJL90_RS16580	PF08345	Flagellar M-ring protein C-terminal
BJL90_RS16585	PF02049	Flagellar hook-basal body complex protein FliE
BJL90_RS16590	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
BJL90_RS16590	PF00460	Flagella basal body rod protein
BJL90_RS16595	PF00460	Flagella basal body rod protein
BJL90_RS16600	PF08222	CodY helix-turn-helix domain
BJL90_RS16600	PF06018	CodY GAF-like domain
BJL90_RS16605	PF07724	AAA domain (Cdc48 subfamily)
BJL90_RS16605	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS16605	PF10431	C-terminal, D2-small domain, of ClpB protein 
BJL90_RS16610	PF00227	Proteasome subunit
BJL90_RS16615	PF01131	DNA topoisomerase
BJL90_RS16615	PF01751	Toprim domain
BJL90_RS16615	PF01396	Topoisomerase DNA binding C4 zinc finger
BJL90_RS16620	PF02481	DNA recombination-mediator protein A
BJL90_RS16620	PF18255	DNA processing protein A sterile alpha motif domain
BJL90_RS16625	PF13335	Magnesium chelatase, subunit ChlI C-terminal
BJL90_RS16625	PF01078	Magnesium chelatase, subunit ChlI
BJL90_RS16630	PF02021	Uncharacterised protein family UPF0102
BJL90_RS16635	PF01351	Ribonuclease HII
BJL90_RS16640	PF01926	50S ribosome-binding GTPase
BJL90_RS16645	PF01245	Ribosomal protein L19
BJL90_RS16650	PF01746	tRNA (Guanine-1)-methyltransferase
BJL90_RS16655	PF01782	RimM N-terminal domain
BJL90_RS16655	PF05239	PRC-barrel domain
BJL90_RS16665	PF00886	Ribosomal protein S16
BJL90_RS16670	PF02978	Signal peptide binding domain
BJL90_RS16670	PF00448	SRP54-type protein, GTPase domain
BJL90_RS16670	PF02881	SRP54-type protein, helical bundle domain
BJL90_RS16675	PF04297	Putative helix-turn-helix protein, YlxM / p13 like
BJL90_RS16680	PF02881	SRP54-type protein, helical bundle domain
BJL90_RS16680	PF00448	SRP54-type protein, GTPase domain
BJL90_RS16685	PF06470	SMC proteins Flexible Hinge Domain
BJL90_RS16685	PF02463	RecF/RecN/SMC N terminal domain
BJL90_RS16695	PF14622	Ribonuclease-III-like
BJL90_RS16695	PF00035	Double-stranded RNA binding motif
BJL90_RS16700	PF00109	Beta-ketoacyl synthase, N-terminal domain
BJL90_RS16700	PF02801	Beta-ketoacyl synthase, C-terminal domain
BJL90_RS16705	PF00550	Phosphopantetheine attachment site
BJL90_RS16715	PF00698	Acyl transferase domain
BJL90_RS16720	PF03060	Nitronate monooxygenase
BJL90_RS16725	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BJL90_RS16725	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal  
BJL90_RS16730	PF02504	Fatty acid synthesis protein
BJL90_RS16735	PF03061	Thioesterase superfamily
BJL90_RS16740	PF01783	Ribosomal L32p protein family
BJL90_RS16745	PF02620	Large ribosomal RNA subunit accumulation protein YceD
BJL90_RS16750	PF00871	Acetokinase family
BJL90_RS16755	PF05636	HIGH Nucleotidyl Transferase
BJL90_RS16760	PF07670	Nucleoside recognition
BJL90_RS16770	PF01467	Cytidylyltransferase-like
BJL90_RS16780	PF00270	DEAD/DEAH box helicase
BJL90_RS16780	PF00271	Helicase conserved C-terminal domain
BJL90_RS16780	PF17191	RecG wedge domain
BJL90_RS16785	PF02734	DAK2 domain
BJL90_RS16785	PF13684	Dihydroxyacetone kinase family
BJL90_RS16790	PF03780	Asp23 family, cell envelope-related function
BJL90_RS16795	PF00830	Ribosomal L28 family
BJL90_RS16805	PF00834	Ribulose-phosphate 3 epimerase family
BJL90_RS16810	PF16745	RsgA N-terminal domain
BJL90_RS16810	PF03193	RsgA GTPase
BJL90_RS16815	PF03793	PASTA domain
BJL90_RS16815	PF00069	Protein kinase domain
BJL90_RS16825	PF04055	Radical SAM superfamily
BJL90_RS16830	PF01189	16S rRNA methyltransferase RsmB/F
BJL90_RS16830	PF01029	NusB family
BJL90_RS16835	PF04298	Putative neutral zinc metallopeptidase
BJL90_RS16845	PF00551	Formyl transferase
BJL90_RS16845	PF02911	Formyl transferase, C-terminal domain
BJL90_RS16850	PF01327	Polypeptide deformylase
BJL90_RS16855	PF18319	PriA DNA helicase Cys-rich region (CRR) domain
BJL90_RS16855	PF17764	3′ DNA-binding domain (3′BD)
BJL90_RS16855	PF18074	Primosomal protein N C-terminal domain
BJL90_RS16855	PF00271	Helicase conserved C-terminal domain
BJL90_RS16855	PF04851	Type III restriction enzyme, res subunit
BJL90_RS16860	PF02441	Flavoprotein
BJL90_RS16860	PF04127	DNA / pantothenate metabolism flavoprotein
BJL90_RS16865	PF01192	RNA polymerase Rpb6 
BJL90_RS16870	PF00625	Guanylate kinase
BJL90_RS16875	PF04025	Domain of unknown function (DUF370)
BJL90_RS16880	PF08340	Domain of unknown function (DUF1732)
BJL90_RS16880	PF03755	YicC-like family, N-terminal region 
BJL90_RS16885	PF01678	Diaminopimelate epimerase
BJL90_RS16890	PF05670	NFACT protein RNA binding domain
BJL90_RS16895	PF00156	Phosphoribosyl transferase domain
BJL90_RS16900	PF00849	RNA pseudouridylate synthase
BJL90_RS16900	PF01479	S4 domain
BJL90_RS16905	PF01252	Signal peptidase (SPase) II
BJL90_RS16920	PF01048	Phosphorylase superfamily
BJL90_RS16925	PF05103	DivIVA protein
BJL90_RS16930	PF01479	S4 domain
BJL90_RS16930	PF17774	Putative RNA-binding domain in YlmH
BJL90_RS16940	PF04472	Cell division protein SepF
BJL90_RS16945	PF01168	Alanine racemase, N-terminal domain
BJL90_RS16955	PF01522	Polysaccharide deacetylase
BJL90_RS16975	PF02743	Cache domain
BJL90_RS16975	PF00672	HAMP domain
BJL90_RS16975	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS16995	PF08463	EcoEI R protein C-terminal
BJL90_RS16995	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
BJL90_RS16995	PF04851	Type III restriction enzyme, res subunit
BJL90_RS16995	PF00271	Helicase conserved C-terminal domain
BJL90_RS17005	PF12161	HsdM N-terminal domain
BJL90_RS17005	PF02384	N-6 DNA Methylase
BJL90_RS17040	PF09547	Stage IV sporulation protein A (spore_IV_A)
BJL90_RS17045	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
BJL90_RS17045	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
BJL90_RS17050	PF02660	Glycerol-3-phosphate acyltransferase
BJL90_RS17055	PF01926	50S ribosome-binding GTPase
BJL90_RS17055	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
BJL90_RS17080	PF14045	YIEGIA protein
BJL90_RS17095	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS17095	PF18698	Histidine kinase sensor domain
BJL90_RS17095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS17095	PF00672	HAMP domain
BJL90_RS17095	PF00989	PAS fold
BJL90_RS17100	PF00072	Response regulator receiver domain
BJL90_RS17100	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS17105	PF02578	Multi-copper polyphenol oxidoreductase laccase
BJL90_RS17110	PF03477	ATP cone domain
BJL90_RS17115	PF05239	PRC-barrel domain
BJL90_RS17120	PF04542	Sigma-70 region 2 
BJL90_RS17120	PF04539	Sigma-70 region 3
BJL90_RS17120	PF04545	Sigma-70, region 4
BJL90_RS17125	PF04542	Sigma-70 region 2 
BJL90_RS17125	PF04545	Sigma-70, region 4
BJL90_RS17130	PF03419	Sporulation factor SpoIIGA 
BJL90_RS17135	PF00091	Tubulin/FtsZ family, GTPase domain
BJL90_RS17135	PF12327	FtsZ family, C-terminal domain
BJL90_RS17140	PF06947	Protein of unknown function (DUF1290)
BJL90_RS17150	PF05949	Bacterial protein of unknown function (DUF881)
BJL90_RS17155	PF08478	POTRA domain, FtsQ-type
BJL90_RS17155	PF03799	Cell division protein FtsQ
BJL90_RS17160	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
BJL90_RS17165	PF03033	Glycosyltransferase family 28 N-terminal domain
BJL90_RS17165	PF04101	Glycosyltransferase family 28 C-terminal domain
BJL90_RS17170	PF01098	Cell cycle protein
BJL90_RS17175	PF08245	Mur ligase middle domain
BJL90_RS17175	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS17180	PF00953	Glycosyl transferase family 4
BJL90_RS17185	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS17185	PF01225	Mur ligase family, catalytic domain
BJL90_RS17185	PF08245	Mur ligase middle domain
BJL90_RS17190	PF02875	Mur ligase family, glutamate ligase domain
BJL90_RS17190	PF01225	Mur ligase family, catalytic domain
BJL90_RS17190	PF08245	Mur ligase middle domain
BJL90_RS17195	PF03793	PASTA domain
BJL90_RS17195	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS17195	PF03717	Penicillin-binding Protein dimerisation domain
BJL90_RS17205	PF01795	MraW methylase family
BJL90_RS17210	PF02381	MraZ protein, putative antitoxin-like
BJL90_RS17215	PF01790	Prolipoprotein diacylglyceryl transferase
BJL90_RS17230	PF01791	DeoC/LacD family aldolase
BJL90_RS17235	PF06130	Phosphate propanoyltransferase
BJL90_RS17250	PF00156	Phosphoribosyl transferase domain
BJL90_RS17255	PF01923	Cobalamin adenosyltransferase
BJL90_RS17260	PF00293	NUDIX domain
BJL90_RS17270	PF01578	Cytochrome C assembly protein
BJL90_RS17280	PF02335	Cytochrome c552
BJL90_RS17285	PF01593	Flavin containing amine oxidoreductase
BJL90_RS17290	PF02581	Thiamine monophosphate synthase
BJL90_RS17300	PF08543	Phosphomethylpyrimidine kinase
BJL90_RS17340	PF05067	Manganese containing catalase
BJL90_RS17360	PF12704	MacB-like periplasmic core domain
BJL90_RS17360	PF02687	FtsX-like permease family
BJL90_RS17360	PF00005	ABC transporter
BJL90_RS17365	PF00005	ABC transporter
BJL90_RS17370	PF12704	MacB-like periplasmic core domain
BJL90_RS17370	PF02687	FtsX-like permease family
BJL90_RS17370	PF00005	ABC transporter
BJL90_RS17385	PF02335	Cytochrome c552
BJL90_RS17390	PF05140	ResB-like family 
BJL90_RS17395	PF01578	Cytochrome C assembly protein
BJL90_RS17400	PF18011	C-terminal domain found in long catalases
BJL90_RS17400	PF06628	Catalase-related immune-responsive
BJL90_RS17400	PF00199	Catalase
BJL90_RS17410	PF12792	CSS motif domain associated with EAL 
BJL90_RS17410	PF00563	EAL domain
BJL90_RS17420	PF09827	CRISPR associated protein Cas2
BJL90_RS17425	PF01867	CRISPR associated protein Cas1
BJL90_RS17435	PF18395	Cas3 C-terminal domain
BJL90_RS17435	PF00270	DEAD/DEAH box helicase
BJL90_RS17435	PF18019	HD domain
BJL90_RS17465	PF04199	Putative cyclase
BJL90_RS17470	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
BJL90_RS17470	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
BJL90_RS17475	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
BJL90_RS17475	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
BJL90_RS17485	PF02310	B12 binding domain
BJL90_RS17485	PF02607	B12 binding domain
BJL90_RS17505	PF00005	ABC transporter
BJL90_RS17510	PF00364	Biotin-requiring enzyme
BJL90_RS17515	PF02785	Biotin carboxylase C-terminal domain
BJL90_RS17515	PF00289	Biotin carboxylase, N-terminal domain
BJL90_RS17515	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
BJL90_RS17520	PF01039	Carboxyl transferase domain
BJL90_RS17525	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
BJL90_RS17535	PF01208	Uroporphyrinogen decarboxylase (URO-D)
BJL90_RS17540	PF02310	B12 binding domain
BJL90_RS17540	PF02607	B12 binding domain
BJL90_RS17555	PF07683	Cobalamin synthesis protein cobW C-terminal domain
BJL90_RS17555	PF02492	CobW/HypB/UreG, nucleotide-binding domain
BJL90_RS17575	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS17575	PF00989	PAS fold
BJL90_RS17575	PF00672	HAMP domain
BJL90_RS17575	PF18698	Histidine kinase sensor domain
BJL90_RS17575	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS17580	PF04073	Aminoacyl-tRNA editing domain
BJL90_RS17585	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS17590	PF07883	Cupin domain
BJL90_RS17610	PF01695	IstB-like ATP binding protein
BJL90_RS17615	PF00155	Aminotransferase class I and II
BJL90_RS17620	PF00005	ABC transporter
BJL90_RS17625	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS17630	PF00497	Bacterial extracellular solute-binding proteins, family 3
BJL90_RS17635	PF13416	Bacterial extracellular solute-binding protein
BJL90_RS17640	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS17645	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS17650	PF00005	ABC transporter
BJL90_RS17650	PF17912	MalK OB fold domain
BJL90_RS17670	PF00075	RNase H
BJL90_RS17675	PF01784	NIF3 (NGG1p interacting factor 3)
BJL90_RS17680	PF04816	tRNA (adenine(22)-N(1))-methyltransferase
BJL90_RS17690	PF03979	Sigma-70 factor, region 1.1
BJL90_RS17690	PF04545	Sigma-70, region 4
BJL90_RS17690	PF00140	Sigma-70 factor, region 1.2
BJL90_RS17690	PF04542	Sigma-70 region 2 
BJL90_RS17690	PF04539	Sigma-70 region 3
BJL90_RS17695	PF01807	CHC2 zinc finger
BJL90_RS17695	PF10410	DnaB-helicase binding domain of primase
BJL90_RS17695	PF08275	DNA primase catalytic core, N-terminal domain
BJL90_RS17700	PF01966	HD domain
BJL90_RS17700	PF13286	Phosphohydrolase-associated domain
BJL90_RS17710	PF04542	Sigma-70 region 2 
BJL90_RS17710	PF08281	Sigma-70, region 4
BJL90_RS17730	PF01434	Peptidase family M41
BJL90_RS17730	PF06480	FtsH Extracellular
BJL90_RS17730	PF17862	AAA+ lid domain
BJL90_RS17730	PF00004	ATPase family associated with various cellular activities (AAA)
BJL90_RS17735	PF02096	60Kd inner membrane protein
BJL90_RS17740	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS17740	PF00672	HAMP domain
BJL90_RS17740	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS17745	PF00072	Response regulator receiver domain
BJL90_RS17745	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS17780	PF00155	Aminotransferase class I and II
BJL90_RS17785	PF13333	Integrase core domain
BJL90_RS17785	PF00665	Integrase core domain
BJL90_RS17785	PF13276	HTH-like domain
BJL90_RS17805	PF00391	PEP-utilising enzyme, mobile domain
BJL90_RS17805	PF02896	PEP-utilising enzyme, TIM barrel domain
BJL90_RS17805	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
BJL90_RS17810	PF03618	Kinase/pyrophosphorylase
BJL90_RS17815	PF00571	CBS domain
BJL90_RS17815	PF08279	HTH domain
BJL90_RS17820	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
BJL90_RS17820	PF03129	Anticodon binding domain
BJL90_RS17825	PF00889	Elongation factor TS
BJL90_RS17830	PF02565	Recombination protein O C terminal
BJL90_RS17830	PF11967	Recombination protein O N terminal
BJL90_RS17835	PF01926	50S ribosome-binding GTPase
BJL90_RS17835	PF07650	KH domain
BJL90_RS17840	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
BJL90_RS17845	PF11258	Protein of unknown function (DUF3048) N-terminal domain
BJL90_RS17845	PF17479	Protein of unknown function (DUF3048) C-terminal domain
BJL90_RS17855	PF02130	Uncharacterized protein family UPF0054
BJL90_RS17860	PF07697	7TM-HD extracellular
BJL90_RS17860	PF01966	HD domain
BJL90_RS17860	PF07698	7TM receptor with intracellular HD hydrolase
BJL90_RS17865	PF02562	PhoH-like protein
BJL90_RS17875	PF07873	YabP family
BJL90_RS17885	PF12127	SigmaW regulon antibacterial
BJL90_RS17890	PF01972	Serine dehydrogenase proteinase
BJL90_RS17890	PF01957	NfeD-like C-terminal, partner-binding
BJL90_RS17895	PF03372	Endonuclease/Exonuclease/phosphatase family
BJL90_RS17900	PF09424	Yqey-like protein
BJL90_RS17905	PF01165	Ribosomal protein S21
BJL90_RS17910	PF01230	HIT domain
BJL90_RS17915	PF00919	Uncharacterized protein family UPF0004
BJL90_RS17915	PF01938	TRAM domain
BJL90_RS17915	PF04055	Radical SAM superfamily
BJL90_RS17920	PF04452	RNA methyltransferase
BJL90_RS17930	PF00226	DnaJ domain
BJL90_RS17930	PF01556	DnaJ C terminal domain
BJL90_RS17930	PF00684	DnaJ central domain
BJL90_RS17935	PF00012	Hsp70 protein
BJL90_RS17940	PF01025	GrpE
BJL90_RS17945	PF01628	HrcA protein C terminal domain
BJL90_RS17950	PF04055	Radical SAM superfamily
BJL90_RS17950	PF06969	HemN C-terminal domain
BJL90_RS17955	PF06421	GTP-binding protein LepA C-terminus
BJL90_RS17955	PF03144	Elongation factor Tu domain 2
BJL90_RS17955	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS17955	PF00679	Elongation factor G C-terminus
BJL90_RS17970	PF03418	Germination protease
BJL90_RS17975	PF01649	Ribosomal protein S20
BJL90_RS17985	PF13567	Domain of unknown function (DUF4131)
BJL90_RS17985	PF03772	Competence protein
BJL90_RS17985	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS17995	PF00072	Response regulator receiver domain
BJL90_RS17995	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS18000	PF12704	MacB-like periplasmic core domain
BJL90_RS18000	PF02687	FtsX-like permease family
BJL90_RS18000	PF00005	ABC transporter
BJL90_RS18025	PF00005	ABC transporter
BJL90_RS18050	PF02687	FtsX-like permease family
BJL90_RS18050	PF12704	MacB-like periplasmic core domain
BJL90_RS18050	PF00005	ABC transporter
BJL90_RS18070	PF12706	Beta-lactamase superfamily domain
BJL90_RS18090	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
BJL90_RS18090	PF01411	tRNA synthetases class II (A)
BJL90_RS18090	PF02272	DHHA1 domain
BJL90_RS18095	PF04608	Phosphatidylglycerophosphatase A
BJL90_RS18100	PF00270	DEAD/DEAH box helicase
BJL90_RS18100	PF00271	Helicase conserved C-terminal domain
BJL90_RS18125	PF02223	Thymidylate kinase
BJL90_RS18130	PF00209	Sodium:neurotransmitter symporter family
BJL90_RS18135	PF00005	ABC transporter
BJL90_RS18135	PF12704	MacB-like periplasmic core domain
BJL90_RS18135	PF02687	FtsX-like permease family
BJL90_RS18145	PF00005	ABC transporter
BJL90_RS18150	PF00881	Nitroreductase family
BJL90_RS18155	PF03773	Predicted permease
BJL90_RS18165	PF02683	Cytochrome C biogenesis protein transmembrane region
BJL90_RS18165	PF11412	Disulphide bond corrector protein DsbC
BJL90_RS18170	PF00085	Thioredoxin
BJL90_RS18175	PF01022	Bacterial regulatory protein, arsR family
BJL90_RS18190	PF00672	HAMP domain
BJL90_RS18190	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS18190	PF12729	Four helix bundle sensory module for signal transduction
BJL90_RS18200	PF00120	Glutamine synthetase, catalytic domain
BJL90_RS18200	PF03951	Glutamine synthetase, beta-Grasp domain
BJL90_RS18205	PF02934	GatB/GatE catalytic domain
BJL90_RS18205	PF02637	GatB domain
BJL90_RS18210	PF01425	Amidase
BJL90_RS18215	PF02686	Glu-tRNAGln amidotransferase C subunit
BJL90_RS18220	PF01336	OB-fold nucleic acid binding domain
BJL90_RS18220	PF00152	tRNA synthetases class II (D, K and N) 
BJL90_RS18225	PF01842	ACT domain
BJL90_RS18230	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BJL90_RS18230	PF00205	Thiamine pyrophosphate enzyme, central domain
BJL90_RS18230	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS18255	PF00005	ABC transporter
BJL90_RS18255	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS18260	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS18260	PF00005	ABC transporter
BJL90_RS18265	PF00005	ABC transporter
BJL90_RS18265	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS18280	PF00107	Zinc-binding dehydrogenase
BJL90_RS18280	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS18285	PF02447	GntP family permease
BJL90_RS18290	PF00106	short chain dehydrogenase
BJL90_RS18295	PF03786	D-mannonate dehydratase (UxuA)
BJL90_RS18305	PF08903	Domain of unknown function (DUF1846)
BJL90_RS18315	PF00664	ABC transporter transmembrane region
BJL90_RS18315	PF00005	ABC transporter
BJL90_RS18320	PF00664	ABC transporter transmembrane region
BJL90_RS18320	PF00005	ABC transporter
BJL90_RS18325	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS18325	PF00005	ABC transporter
BJL90_RS18330	PF00005	ABC transporter
BJL90_RS18330	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
BJL90_RS18335	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS18335	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS18340	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS18345	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
BJL90_RS18360	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS18365	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS18370	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS18375	PF04962	KduI/IolB family
BJL90_RS18380	PF07729	FCD domain
BJL90_RS18380	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS18385	PF00689	Cation transporting ATPase, C-terminus
BJL90_RS18385	PF00690	Cation transporter/ATPase, N-terminus
BJL90_RS18390	PF02342	TerD domain
BJL90_RS18395	PF02342	TerD domain
BJL90_RS18400	PF02342	TerD domain
BJL90_RS18405	PF05816	Toxic anion resistance protein (TelA)
BJL90_RS18410	PF14266	Putative component of 'biosynthetic module'
BJL90_RS18415	PF01235	Sodium:alanine symporter family
BJL90_RS18420	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS18420	PF00072	Response regulator receiver domain
BJL90_RS18420	PF00158	Sigma-54 interaction domain
BJL90_RS18425	PF00963	Cohesin domain
BJL90_RS18425	PF00395	S-layer homology domain
BJL90_RS18435	PF00005	ABC transporter
BJL90_RS18460	PF17912	MalK OB fold domain
BJL90_RS18460	PF03459	TOBE domain
BJL90_RS18460	PF00005	ABC transporter
BJL90_RS18465	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS18470	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS18475	PF13416	Bacterial extracellular solute-binding protein
BJL90_RS18495	PF04055	Radical SAM superfamily
BJL90_RS18495	PF06969	HemN C-terminal domain
BJL90_RS18505	PF01053	Cys/Met metabolism PLP-dependent enzyme
BJL90_RS18510	PF01053	Cys/Met metabolism PLP-dependent enzyme
BJL90_RS18515	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
BJL90_RS18515	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
BJL90_RS18520	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS18520	PF00107	Zinc-binding dehydrogenase
BJL90_RS18530	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS18535	PF00005	ABC transporter
BJL90_RS18540	PF00072	Response regulator receiver domain
BJL90_RS18540	PF12833	Helix-turn-helix domain
BJL90_RS18545	PF02743	Cache domain
BJL90_RS18545	PF00672	HAMP domain
BJL90_RS18545	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS18545	PF06580	Histidine kinase
BJL90_RS18555	PF02743	Cache domain
BJL90_RS18555	PF00672	HAMP domain
BJL90_RS18555	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS18565	PF03466	LysR substrate binding domain
BJL90_RS18565	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BJL90_RS18570	PF03601	Conserved hypothetical protein 698
BJL90_RS18580	PF00488	MutS domain V
BJL90_RS18580	PF05190	MutS family domain IV
BJL90_RS18580	PF01624	MutS domain I
BJL90_RS18580	PF05192	MutS domain III
BJL90_RS18580	PF05188	MutS domain II
BJL90_RS18585	PF01871	AMMECR1
BJL90_RS18585	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
BJL90_RS18590	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
BJL90_RS18590	PF01871	AMMECR1
BJL90_RS18595	PF02560	Cyanate lyase C-terminal domain
BJL90_RS18605	PF01638	HxlR-like helix-turn-helix
BJL90_RS18620	PF00155	Aminotransferase class I and II
BJL90_RS18620	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS18625	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BJL90_RS18625	PF03466	LysR substrate binding domain
BJL90_RS18635	PF01261	Xylose isomerase-like TIM barrel
BJL90_RS18645	PF01037	Lrp/AsnC ligand binding domain
BJL90_RS18655	PF08241	Methyltransferase domain
BJL90_RS18675	PF00872	Transposase, Mutator family
BJL90_RS18700	PF08281	Sigma-70, region 4
BJL90_RS18700	PF04542	Sigma-70 region 2 
BJL90_RS18715	PF00239	Resolvase, N terminal domain
BJL90_RS18715	PF18010	Cry35Ab1 HTH C-terminal domain
BJL90_RS18735	PF00872	Transposase, Mutator family
BJL90_RS18750	PF03050	Transposase IS66 family 
BJL90_RS18750	PF13817	IS66 C-terminal element
BJL90_RS18750	PF13007	Transposase C of IS166 homeodomain
BJL90_RS18750	PF13005	zinc-finger binding domain of transposase IS66 
BJL90_RS18765	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS18770	PF02633	Creatinine amidohydrolase
BJL90_RS18800	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS18810	PF00589	Phage integrase family
BJL90_RS18810	PF13495	Phage integrase, N-terminal SAM-like domain
BJL90_RS18820	PF01541	GIY-YIG catalytic domain
BJL90_RS18820	PF02151	UvrB/uvrC motif
BJL90_RS18820	PF08459	UvrC Helix-hairpin-helix N-terminal
BJL90_RS18835	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS18835	PF00072	Response regulator receiver domain
BJL90_RS18840	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS18840	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS18840	PF00672	HAMP domain
BJL90_RS18860	PF05569	BlaR1 peptidase M56
BJL90_RS18860	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS18865	PF03965	Penicillinase repressor
BJL90_RS18870	PF00149	Calcineurin-like phosphoesterase
BJL90_RS18875	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS18885	PF03063	Prismane/CO dehydrogenase family
BJL90_RS18890	PF02082	Transcriptional regulator
BJL90_RS18895	PF00902	Sec-independent protein translocase protein (TatC)
BJL90_RS18900	PF02416	mttA/Hcf106 family
BJL90_RS18905	PF00902	Sec-independent protein translocase protein (TatC)
BJL90_RS18930	PF01790	Prolipoprotein diacylglyceryl transferase
BJL90_RS18935	PF02683	Cytochrome C biogenesis protein transmembrane region
BJL90_RS18945	PF18698	Histidine kinase sensor domain
BJL90_RS18945	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS18945	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS18945	PF00672	HAMP domain
BJL90_RS18945	PF00989	PAS fold
BJL90_RS18950	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS18950	PF00072	Response regulator receiver domain
BJL90_RS18965	PF12800	4Fe-4S binding domain
BJL90_RS18965	PF09163	Formate dehydrogenase N, transmembrane
BJL90_RS18965	PF13247	4Fe-4S dicluster domain
BJL90_RS18970	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS18970	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS18970	PF00384	Molybdopterin oxidoreductase
BJL90_RS18975	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS18975	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS18975	PF00384	Molybdopterin oxidoreductase
BJL90_RS18980	PF00395	S-layer homology domain
BJL90_RS18980	PF00963	Cohesin domain
BJL90_RS18985	PF00704	Glycosyl hydrolases family 18
BJL90_RS18985	PF01476	LysM domain
BJL90_RS18990	PF00403	Heavy-metal-associated domain
BJL90_RS19010	PF01209	ubiE/COQ5 methyltransferase family
BJL90_RS19020	PF00072	Response regulator receiver domain
BJL90_RS19020	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS19035	PF00694	Aconitase C-terminal domain
BJL90_RS19040	PF03390	2-hydroxycarboxylate transporter family
BJL90_RS19045	PF00072	Response regulator receiver domain
BJL90_RS19045	PF08279	HTH domain
BJL90_RS19050	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
BJL90_RS19050	PF17203	Single cache domain 3
BJL90_RS19050	PF00989	PAS fold
BJL90_RS19050	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS19055	PF00890	FAD binding domain
BJL90_RS19055	PF04205	FMN-binding domain
BJL90_RS19055	PF03358	NADPH-dependent FMN reductase
BJL90_RS19080	PF04073	Aminoacyl-tRNA editing domain
BJL90_RS19085	PF00082	Subtilase family
BJL90_RS19095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS19095	PF00989	PAS fold
BJL90_RS19095	PF16736	Single Cache-like 
BJL90_RS19095	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS19100	PF00072	Response regulator receiver domain
BJL90_RS19100	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS19110	PF00892	EamA-like transporter family
BJL90_RS19115	PF00155	Aminotransferase class I and II
BJL90_RS19120	PF00155	Aminotransferase class I and II
BJL90_RS19120	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS19130	PF03453	MoeA N-terminal region (domain I and II)
BJL90_RS19130	PF03454	MoeA C-terminal region (domain IV)
BJL90_RS19130	PF00994	Probable molybdopterin binding domain
BJL90_RS19140	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS19140	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS19140	PF00384	Molybdopterin oxidoreductase
BJL90_RS19145	PF00384	Molybdopterin oxidoreductase
BJL90_RS19145	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BJL90_RS19145	PF01568	Molydopterin dinucleotide binding domain
BJL90_RS19145	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
BJL90_RS19145	PF12838	4Fe-4S dicluster domain
BJL90_RS19155	PF00005	ABC transporter
BJL90_RS19160	PF01032	FecCD transport family
BJL90_RS19165	PF01497	Periplasmic binding protein
BJL90_RS19170	PF12704	MacB-like periplasmic core domain
BJL90_RS19170	PF00005	ABC transporter
BJL90_RS19170	PF02687	FtsX-like permease family
BJL90_RS19175	PF02492	CobW/HypB/UreG, nucleotide-binding domain
BJL90_RS19185	PF08241	Methyltransferase domain
BJL90_RS19190	PF00005	ABC transporter
BJL90_RS19195	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS19200	PF09084	NMT1/THI5 like
BJL90_RS19225	PF02625	XdhC and CoxI family
BJL90_RS19225	PF13478	XdhC Rossmann domain
BJL90_RS19250	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
BJL90_RS19250	PF03466	LysR substrate binding domain
BJL90_RS19255	PF04143	Sulphur transport
BJL90_RS19265	PF04143	Sulphur transport
BJL90_RS19270	PF00902	Sec-independent protein translocase protein (TatC)
BJL90_RS19275	PF02416	mttA/Hcf106 family
BJL90_RS19295	PF05569	BlaR1 peptidase M56
BJL90_RS19295	PF00905	Penicillin binding protein transpeptidase domain
BJL90_RS19300	PF03965	Penicillinase repressor
BJL90_RS19310	PF12849	PBP superfamily domain
BJL90_RS19315	PF01979	Amidohydrolase family
BJL90_RS19320	PF02219	Methylenetetrahydrofolate reductase
BJL90_RS19325	PF02638	Glycosyl hydrolase-like 10
BJL90_RS19330	PF07670	Nucleoside recognition
BJL90_RS19340	PF02709	N-terminal domain of galactosyltransferase
BJL90_RS19340	PF00535	Glycosyl transferase family 2
BJL90_RS19350	PF00581	Rhodanese-like domain
BJL90_RS19355	PF08402	TOBE domain
BJL90_RS19355	PF00005	ABC transporter
BJL90_RS19370	PF13416	Bacterial extracellular solute-binding protein
BJL90_RS19380	PF09335	SNARE associated Golgi protein
BJL90_RS19390	PF09335	SNARE associated Golgi protein
BJL90_RS19405	PF00313	'Cold-shock' DNA-binding domain
BJL90_RS19420	PF02607	B12 binding domain
BJL90_RS19420	PF02310	B12 binding domain
BJL90_RS19435	PF00270	DEAD/DEAH box helicase
BJL90_RS19435	PF00271	Helicase conserved C-terminal domain
BJL90_RS19445	PF06445	GyrI-like small molecule binding domain
BJL90_RS19445	PF12833	Helix-turn-helix domain
BJL90_RS19450	PF01980	tRNA-methyltransferase O
BJL90_RS19450	PF18389	TrmO C-terminal domain
BJL90_RS19455	PF01228	Glycine radical
BJL90_RS19455	PF02901	Pyruvate formate lyase-like
BJL90_RS19460	PF04055	Radical SAM superfamily
BJL90_RS19465	PF01381	Helix-turn-helix
BJL90_RS19470	PF12911	N-terminal TM domain of oligopeptide transport permease C
BJL90_RS19470	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS19495	PF11208	Protein of unknown function (DUF2992)
BJL90_RS19510	PF02110	Hydroxyethylthiazole kinase family
BJL90_RS19520	PF01613	Flavin reductase like domain
BJL90_RS19545	PF00701	Dihydrodipicolinate synthetase family
BJL90_RS19550	PF01266	FAD dependent oxidoreductase
BJL90_RS19555	PF04324	BFD-like [2Fe-2S] binding domain
BJL90_RS19555	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS19565	PF04324	BFD-like [2Fe-2S] binding domain
BJL90_RS19565	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS19575	PF00158	Sigma-54 interaction domain
BJL90_RS19590	PF05257	CHAP domain
BJL90_RS19590	PF01476	LysM domain
BJL90_RS19595	PF00092	von Willebrand factor type A domain
BJL90_RS19655	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
BJL90_RS19675	PF01668	SmpB protein
BJL90_RS19685	PF08206	Ribonuclease B OB domain
BJL90_RS19685	PF00575	S1 RNA binding domain
BJL90_RS19685	PF17876	Cold shock domain
BJL90_RS19685	PF00773	RNB domain
BJL90_RS19695	PF03030	Inorganic H+ pyrophosphatase
BJL90_RS19700	PF03840	Preprotein translocase SecG subunit
BJL90_RS19705	PF00113	Enolase, C-terminal TIM barrel domain
BJL90_RS19705	PF03952	Enolase, N-terminal domain
BJL90_RS19710	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
BJL90_RS19710	PF01676	Metalloenzyme superfamily
BJL90_RS19715	PF00121	Triosephosphate isomerase
BJL90_RS19720	PF00162	Phosphoglycerate kinase
BJL90_RS19725	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
BJL90_RS19725	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BJL90_RS19730	PF04198	Putative sugar-binding domain
BJL90_RS19735	PF04552	Sigma-54, DNA binding domain
BJL90_RS19735	PF00309	Sigma-54 factor, Activator interacting domain (AID) 
BJL90_RS19735	PF04963	Sigma-54 factor, core binding domain
BJL90_RS19740	PF02504	Fatty acid synthesis protein
BJL90_RS19745	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
BJL90_RS19750	PF07355	Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
BJL90_RS19755	PF07355	Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
BJL90_RS19760	PF04723	Glycine reductase complex selenoprotein A
BJL90_RS19765	PF04723	Glycine reductase complex selenoprotein A
BJL90_RS19770	PF09338	Glycine/sarcosine/betaine reductase component B subunits
BJL90_RS19775	PF00085	Thioredoxin
BJL90_RS19780	PF07992	Pyridine nucleotide-disulphide oxidoreductase
BJL90_RS19790	PF02645	Uncharacterised protein, DegV family COG1307
BJL90_RS19795	PF00588	SpoU rRNA Methylase family
BJL90_RS19810	PF04239	Protein of unknown function (DUF421)
BJL90_RS19820	PF07875	Coat F domain
BJL90_RS19825	PF13823	Alcohol dehydrogenase GroES-associated
BJL90_RS19825	PF00107	Zinc-binding dehydrogenase
BJL90_RS19825	PF08240	Alcohol dehydrogenase GroES-like domain
BJL90_RS19835	PF07875	Coat F domain
BJL90_RS19845	PF05239	PRC-barrel domain
BJL90_RS19845	PF09557	Domain of unknown function (DUF2382)
BJL90_RS19850	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS19855	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS19865	PF05504	Spore germination B3/ GerAC like, C-terminal 
BJL90_RS19870	PF00465	Iron-containing alcohol dehydrogenase 
BJL90_RS19875	PF05199	GMC oxidoreductase
BJL90_RS19875	PF00732	GMC oxidoreductase
BJL90_RS19900	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS19905	PF00005	ABC transporter
BJL90_RS19920	PF00005	ABC transporter
BJL90_RS19925	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS19930	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS19930	PF00072	Response regulator receiver domain
BJL90_RS19935	PF01381	Helix-turn-helix
BJL90_RS19935	PF07883	Cupin domain
BJL90_RS19955	PF09345	Domain of unknown function (DUF1987)
BJL90_RS19965	PF03707	Bacterial signalling protein N terminal repeat
BJL90_RS19965	PF00563	EAL domain
BJL90_RS19965	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS19965	PF13188	PAS domain
BJL90_RS19970	PF00701	Dihydrodipicolinate synthetase family
BJL90_RS19975	PF04295	D-galactarate dehydratase / Altronate hydrolase, C terminus
BJL90_RS19980	PF08666	SAF domain
BJL90_RS19985	PF03812	2-keto-3-deoxygluconate permease
BJL90_RS19990	PF00682	HMGL-like
BJL90_RS19990	PF07836	DmpG-like communication domain
BJL90_RS19995	PF01118	Semialdehyde dehydrogenase, NAD binding domain
BJL90_RS19995	PF09290	Prokaryotic acetaldehyde dehydrogenase, dimerisation
BJL90_RS20000	PF01614	Bacterial transcriptional regulator
BJL90_RS20000	PF09339	IclR helix-turn-helix domain
BJL90_RS20010	PF00072	Response regulator receiver domain
BJL90_RS20010	PF00158	Sigma-54 interaction domain
BJL90_RS20010	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS20015	PF13426	PAS domain
BJL90_RS20015	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS20015	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS20015	PF00672	HAMP domain
BJL90_RS20020	PF02080	TrkA-C domain
BJL90_RS20020	PF02254	TrkA-N domain
BJL90_RS20025	PF02386	Cation transport protein
BJL90_RS20035	PF02254	TrkA-N domain
BJL90_RS20035	PF02080	TrkA-C domain
BJL90_RS20040	PF00072	Response regulator receiver domain
BJL90_RS20045	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS20045	PF00072	Response regulator receiver domain
BJL90_RS20050	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS20050	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS20050	PF00989	PAS fold
BJL90_RS20050	PF16736	Single Cache-like 
BJL90_RS20055	PF00484	Carbonic anhydrase
BJL90_RS20060	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS20060	PF00672	HAMP domain
BJL90_RS20060	PF02743	Cache domain
BJL90_RS20065	PF00958	GMP synthase C terminal domain
BJL90_RS20065	PF02540	NAD synthase
BJL90_RS20065	PF00117	Glutamine amidotransferase class-I
BJL90_RS20105	PF01554	MatE
BJL90_RS20115	PF00005	ABC transporter
BJL90_RS20120	PF08125	Mannitol dehydrogenase C-terminal domain
BJL90_RS20120	PF01232	Mannitol dehydrogenase Rossmann domain
BJL90_RS20125	PF03786	D-mannonate dehydratase (UxuA)
BJL90_RS20130	PF02614	Glucuronate isomerase
BJL90_RS20135	PF07729	FCD domain
BJL90_RS20135	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS20140	PF06808	Tripartite ATP-independent periplasmic transporter, DctM component
BJL90_RS20145	PF04290	Tripartite ATP-independent periplasmic transporters, DctQ component
BJL90_RS20150	PF03480	Bacterial extracellular solute-binding protein, family 7
BJL90_RS20155	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS20165	PF01171	PP-loop family
BJL90_RS20170	PF01751	Toprim domain
BJL90_RS20170	PF01131	DNA topoisomerase
BJL90_RS20175	PF12848	ABC transporter
BJL90_RS20175	PF00005	ABC transporter
BJL90_RS20180	PF16326	ABC transporter C-terminal domain
BJL90_RS20180	PF00005	ABC transporter
BJL90_RS20180	PF12848	ABC transporter
BJL90_RS20185	PF00271	Helicase conserved C-terminal domain
BJL90_RS20185	PF00270	DEAD/DEAH box helicase
BJL90_RS20205	PF00072	Response regulator receiver domain
BJL90_RS20205	PF01584	CheW-like domain
BJL90_RS20210	PF00672	HAMP domain
BJL90_RS20210	PF02743	Cache domain
BJL90_RS20210	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS20225	PF02390	Putative methyltransferase 
BJL90_RS20240	PF02310	B12 binding domain
BJL90_RS20240	PF02607	B12 binding domain
BJL90_RS20250	PF18665	Tetracyclin repressor-like, C-terminal domain
BJL90_RS20250	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS20265	PF00664	ABC transporter transmembrane region
BJL90_RS20265	PF00005	ABC transporter
BJL90_RS20310	PF02548	Ketopantoate hydroxymethyltransferase
BJL90_RS20315	PF02569	Pantoate-beta-alanine ligase
BJL90_RS20320	PF02261	Aspartate decarboxylase
BJL90_RS20325	PF16363	GDP-mannose 4,6 dehydratase
BJL90_RS20330	PF05726	Pirin C-terminal cupin domain
BJL90_RS20330	PF02678	Pirin
BJL90_RS20335	PF00701	Dihydrodipicolinate synthetase family
BJL90_RS20340	PF00920	Dehydratase family
BJL90_RS20345	PF02447	GntP family permease
BJL90_RS20350	PF07729	FCD domain
BJL90_RS20350	PF00392	Bacterial regulatory proteins, gntR family
BJL90_RS20360	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
BJL90_RS20370	PF02653	Branched-chain amino acid transport system / permease component
BJL90_RS20375	PF09383	NIL domain
BJL90_RS20375	PF00005	ABC transporter
BJL90_RS20380	PF07739	TipAS antibiotic-recognition domain
BJL90_RS20380	PF13411	MerR HTH family regulatory protein
BJL90_RS20385	PF00005	ABC transporter
BJL90_RS20390	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS20400	PF01757	Acyltransferase family
BJL90_RS20400	PF01168	Alanine racemase, N-terminal domain
BJL90_RS20400	PF00842	Alanine racemase, C-terminal domain
BJL90_RS20405	PF02557	D-alanyl-D-alanine carboxypeptidase
BJL90_RS20410	PF01820	D-ala D-ala ligase N-terminus
BJL90_RS20410	PF07478	D-ala D-ala ligase C-terminus
BJL90_RS20415	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS20415	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS20420	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS20420	PF00072	Response regulator receiver domain
BJL90_RS20430	PF13411	MerR HTH family regulatory protein
BJL90_RS20430	PF07739	TipAS antibiotic-recognition domain
BJL90_RS20440	PF00005	ABC transporter
BJL90_RS20445	PF13977	BetI-type transcriptional repressor, C-terminal
BJL90_RS20445	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS20450	PF00005	ABC transporter
BJL90_RS20455	PF02687	FtsX-like permease family
BJL90_RS20455	PF12704	MacB-like periplasmic core domain
BJL90_RS20460	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS20460	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS20460	PF00672	HAMP domain
BJL90_RS20460	PF13426	PAS domain
BJL90_RS20465	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS20465	PF00072	Response regulator receiver domain
BJL90_RS20475	PF17912	MalK OB fold domain
BJL90_RS20475	PF03459	TOBE domain
BJL90_RS20475	PF00005	ABC transporter
BJL90_RS20490	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS20495	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS20515	PF09335	SNARE associated Golgi protein
BJL90_RS20540	PF00005	ABC transporter
BJL90_RS20545	PF00353	RTX calcium-binding nonapeptide repeat (4 copies)
BJL90_RS20545	PF06594	Haemolysin-type calcium binding protein related domain
BJL90_RS20550	PF00248	Aldo/keto reductase family
BJL90_RS20555	PF16326	ABC transporter C-terminal domain
BJL90_RS20555	PF00005	ABC transporter
BJL90_RS20555	PF12848	ABC transporter
BJL90_RS20560	PF04405	Domain of Unknown function (DUF542)  
BJL90_RS20560	PF01814	Hemerythrin HHE cation binding domain
BJL90_RS20565	PF00258	Flavodoxin
BJL90_RS20565	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS20570	PF13545	Crp-like helix-turn-helix domain
BJL90_RS20570	PF00027	Cyclic nucleotide-binding domain
BJL90_RS20575	PF04205	FMN-binding domain
BJL90_RS20575	PF00890	FAD binding domain
BJL90_RS20580	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS20585	PF03845	Spore germination protein
BJL90_RS20600	PF08669	Glycine cleavage T-protein C-terminal barrel domain
BJL90_RS20600	PF01571	Aminomethyltransferase folate-binding domain
BJL90_RS20605	PF00301	Rubredoxin
BJL90_RS20605	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS20605	PF00258	Flavodoxin
BJL90_RS20610	PF00072	Response regulator receiver domain
BJL90_RS20610	PF00196	Bacterial regulatory proteins, luxR family
BJL90_RS20615	PF07730	Histidine kinase
BJL90_RS20630	PF00005	ABC transporter
BJL90_RS20635	PF16582	Middle domain of thiamine pyrophosphate
BJL90_RS20635	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
BJL90_RS20635	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
BJL90_RS20645	PF00158	Sigma-54 interaction domain
BJL90_RS20645	PF02954	Bacterial regulatory protein, Fis family
BJL90_RS20645	PF00989	PAS fold
BJL90_RS20650	PF00108	Thiolase, N-terminal domain
BJL90_RS20650	PF02803	Thiolase, C-terminal domain
BJL90_RS20665	PF01144	Coenzyme A transferase
BJL90_RS20675	PF01810	LysE type translocator
BJL90_RS20680	PF01037	Lrp/AsnC ligand binding domain
BJL90_RS20685	PF06133	Control of competence regulator ComK, YlbF/YmcA
BJL90_RS20700	PF01869	BadF/BadG/BcrA/BcrD ATPase family
BJL90_RS20705	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component 
BJL90_RS20720	PF00005	ABC transporter
BJL90_RS20730	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component 
BJL90_RS20750	PF00266	Aminotransferase class-V
BJL90_RS20760	PF01554	MatE
BJL90_RS20770	PF00753	Metallo-beta-lactamase superfamily
BJL90_RS20790	PF16736	Single Cache-like 
BJL90_RS20790	PF00989	PAS fold
BJL90_RS20790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS20790	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS20795	PF00072	Response regulator receiver domain
BJL90_RS20795	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS20800	PF00877	NlpC/P60 family
BJL90_RS20805	PF05908	Poly-gamma-glutamate hydrolase
BJL90_RS20810	PF05908	Poly-gamma-glutamate hydrolase
BJL90_RS20820	PF14102	Capsule biosynthesis CapC
BJL90_RS20825	PF08245	Mur ligase middle domain
BJL90_RS20835	PF00872	Transposase, Mutator family
BJL90_RS20840	PF05958	tRNA (Uracil-5-)-methyltransferase
BJL90_RS20855	PF01066	CDP-alcohol phosphatidyltransferase
BJL90_RS20860	PF01116	Fructose-bisphosphate aldolase class-II
BJL90_RS20870	PF04607	Region found in RelA / SpoT proteins
BJL90_RS20880	PF16199	Radical_SAM C-terminal domain
BJL90_RS20880	PF04055	Radical SAM superfamily
BJL90_RS20890	PF01476	LysM domain
BJL90_RS20890	PF00877	NlpC/P60 family
BJL90_RS20895	PF02652	L-lactate permease
BJL90_RS20900	PF09861	Lactate racemase N-terminal domain
BJL90_RS20905	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
BJL90_RS20920	PF03553	Na+/H+ antiporter family
BJL90_RS20920	PF13726	Na+-H+ antiporter family
BJL90_RS20925	PF00009	Elongation factor Tu GTP binding domain
BJL90_RS20925	PF16658	Class II release factor RF3, C-terminal domain
BJL90_RS20925	PF03144	Elongation factor Tu domain 2
BJL90_RS20930	PF00390	Malic enzyme, N-terminal domain
BJL90_RS20930	PF03949	Malic enzyme, NAD binding domain
BJL90_RS20940	PF00563	EAL domain
BJL90_RS20940	PF03707	Bacterial signalling protein N terminal repeat
BJL90_RS20940	PF00990	Diguanylate cyclase, GGDEF domain
BJL90_RS20955	PF06114	IrrE N-terminal-like domain
BJL90_RS20955	PF01381	Helix-turn-helix
BJL90_RS20955	PF09856	Predicted transcriptional regulator (DUF2083)
BJL90_RS20960	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
BJL90_RS20975	PF04293	SpoVR like protein
BJL90_RS20980	PF04285	Protein of unknown function (DUF444)
BJL90_RS20985	PF06798	PrkA serine protein kinase C-terminal domain
BJL90_RS20985	PF08298	PrkA AAA domain
BJL90_RS20990	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS20990	PF17202	Single cache domain 3
BJL90_RS20990	PF00672	HAMP domain
BJL90_RS20995	PF01584	CheW-like domain
BJL90_RS21000	PF00672	HAMP domain
BJL90_RS21000	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
BJL90_RS21000	PF02743	Cache domain
BJL90_RS21005	PF13509	S1 domain
BJL90_RS21005	PF17783	CvfB-like winged helix domain
BJL90_RS21010	PF00873	AcrB/AcrD/AcrF family
BJL90_RS21015	PF00529	HlyD membrane-fusion protein of T1SS
BJL90_RS21015	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion
BJL90_RS21020	PF00664	ABC transporter transmembrane region
BJL90_RS21020	PF00005	ABC transporter
BJL90_RS21025	PF00664	ABC transporter transmembrane region
BJL90_RS21025	PF00005	ABC transporter
BJL90_RS21030	PF00486	Transcriptional regulatory protein, C terminal
BJL90_RS21030	PF00072	Response regulator receiver domain
BJL90_RS21035	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS21035	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS21035	PF00672	HAMP domain
BJL90_RS21035	PF13426	PAS domain
BJL90_RS21040	PF09582	Iron only nitrogenase protein AnfO (AnfO_nitrog)
BJL90_RS21050	PF00072	Response regulator receiver domain
BJL90_RS21055	PF09984	Uncharacterised signal transduction histidine kinase domain (DUF2222)
BJL90_RS21055	PF00672	HAMP domain
BJL90_RS21055	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS21055	PF00072	Response regulator receiver domain
BJL90_RS21055	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS21055	PF01627	Hpt domain
BJL90_RS21065	PF01276	Orn/Lys/Arg decarboxylase, major domain
BJL90_RS21065	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
BJL90_RS21070	PF17149	Periplasmic sensor domain found in signal transduction proteins
BJL90_RS21070	PF00672	HAMP domain
BJL90_RS21070	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
BJL90_RS21070	PF01627	Hpt domain
BJL90_RS21070	PF00512	His Kinase A (phospho-acceptor) domain
BJL90_RS21070	PF00072	Response regulator receiver domain
BJL90_RS21090	PF00005	ABC transporter
BJL90_RS21095	PF00440	Bacterial regulatory proteins, tetR family
BJL90_RS21105	PF00291	Pyridoxal-phosphate dependent enzyme
BJL90_RS21105	PF13291	ACT domain
BJL90_RS21120	PF03323	Bacillus/Clostridium GerA spore germination protein
BJL90_RS21135	PF01381	Helix-turn-helix
BJL90_RS21145	PF00528	Binding-protein-dependent transport system inner membrane component
BJL90_RS21150	PF00005	ABC transporter
BJL90_RS21210	PF02348	Cytidylyltransferase
BJL90_RS21220	PF00483	Nucleotidyl transferase
BJL90_RS21225	PF12464	Maltose acetyltransferase 
BJL90_RS21225	PF00132	Bacterial transferase hexapeptide (six repeats)
BJL90_RS21230	PF03102	NeuB family
BJL90_RS21230	PF08666	SAF domain
BJL90_RS21235	PF02350	UDP-N-acetylglucosamine 2-epimerase
BJL90_RS21240	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
BJL90_RS21245	PF01370	NAD dependent epimerase/dehydratase family
BJL90_RS21255	PF00005	ABC transporter
BJL90_RS21255	PF00664	ABC transporter transmembrane region
