locus-tag class description CLFO_RS00005 PF11638 DnaA N-terminal domain CLFO_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CLFO_RS00005 PF00308 Bacterial dnaA protein CLFO_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CLFO_RS00010 PF02767 DNA polymerase III beta subunit, central domain CLFO_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CLFO_RS00020 PF02463 RecF/RecN/SMC N terminal domain CLFO_RS00030 PF00204 DNA gyrase B CLFO_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS00030 PF01751 Toprim domain CLFO_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus CLFO_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A CLFO_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller CLFO_RS00040 PF01740 STAS domain CLFO_RS00045 PF13581 Histidine kinase-like ATPase domain CLFO_RS00050 PF04542 Sigma-70 region 2 CLFO_RS00050 PF04539 Sigma-70 region 3 CLFO_RS00050 PF04545 Sigma-70, region 4 CLFO_RS00095 PF02829 3H domain CLFO_RS00095 PF08279 HTH domain CLFO_RS00100 PF02445 Quinolinate synthetase A protein CLFO_RS00105 PF00890 FAD binding domain CLFO_RS00110 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLFO_RS00110 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLFO_RS00120 PF03699 Uncharacterised protein family (UPF0182) CLFO_RS00130 PF02403 Seryl-tRNA synthetase N-terminal domain CLFO_RS00130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLFO_RS00140 PF14437 MafB19-like deaminase CLFO_RS00155 PF01206 Sulfurtransferase TusA CLFO_RS00165 PF00924 Mechanosensitive ion channel CLFO_RS00175 PF01250 Ribosomal protein S6 CLFO_RS00180 PF00436 Single-strand binding protein family CLFO_RS00185 PF01084 Ribosomal protein S18 CLFO_RS00200 PF01386 Ribosomal L25p family CLFO_RS00200 PF14693 Ribosomal protein TL5, C-terminal domain CLFO_RS00205 PF01386 Ribosomal L25p family CLFO_RS00205 PF14693 Ribosomal protein TL5, C-terminal domain CLFO_RS00235 PF02583 Metal-sensitive transcriptional repressor CLFO_RS00245 PF02618 YceG-like family CLFO_RS00250 PF00899 ThiF family CLFO_RS00260 PF01903 CbiX CLFO_RS00265 PF01488 Shikimate / quinate 5-dehydrogenase CLFO_RS00265 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CLFO_RS00265 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CLFO_RS00270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00270 PF14824 Sirohaem biosynthesis protein central CLFO_RS00270 PF10414 Sirohaem synthase dimerisation region CLFO_RS00275 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLFO_RS00275 PF03900 Porphobilinogen deaminase, C-terminal domain CLFO_RS00280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00280 PF02602 Uroporphyrinogen-III synthase HemD CLFO_RS00285 PF00490 Delta-aminolevulinic acid dehydratase CLFO_RS00290 PF00202 Aminotransferase class-III CLFO_RS00295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLFO_RS00295 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLFO_RS00310 PF00288 GHMP kinases N terminal domain CLFO_RS00315 PF02570 Precorrin-8X methylmutase CLFO_RS00320 PF01888 CbiD CLFO_RS00325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00330 PF05175 Methyltransferase small domain CLFO_RS00335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00345 PF11761 Cobalamin biosynthesis central region CLFO_RS00345 PF01890 Cobalamin synthesis G C-terminus CLFO_RS00345 PF11760 Cobalamin synthesis G N-terminal CLFO_RS00350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00370 PF01276 Orn/Lys/Arg decarboxylase, major domain CLFO_RS00370 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLFO_RS00375 PF02223 Thymidylate kinase CLFO_RS00380 PF06153 Cyclic-di-AMP receptor CLFO_RS00385 PF12169 DNA polymerase III subunits gamma and tau domain III CLFO_RS00390 PF04468 PSP1 C-terminal conserved region CLFO_RS00400 PF05175 Methyltransferase small domain CLFO_RS00405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00410 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLFO_RS00410 PF18277 AbrB C-terminal domain CLFO_RS00415 PF12627 Probable RNA and SrmB- binding site of polymerase A CLFO_RS00415 PF13735 tRNA nucleotidyltransferase domain 2 putative CLFO_RS00415 PF01743 Poly A polymerase head domain CLFO_RS00420 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CLFO_RS00420 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CLFO_RS00420 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLFO_RS00425 PF07670 Nucleoside recognition CLFO_RS00430 PF07670 Nucleoside recognition CLFO_RS00435 PF01588 Putative tRNA binding domain CLFO_RS00435 PF08264 Anticodon-binding domain of tRNA CLFO_RS00435 PF09334 tRNA synthetases class I (M) CLFO_RS00440 PF01026 TatD related DNase CLFO_RS00450 PF06725 3D domain CLFO_RS00450 PF03990 G5-linked-Ubiquitin-like domain CLFO_RS00450 PF07501 G5 domain CLFO_RS00455 PF13331 Domain of unknown function (DUF4093) CLFO_RS00455 PF13662 Toprim domain CLFO_RS00460 PF00398 Ribosomal RNA adenine dimethylase CLFO_RS00470 PF01699 Sodium/calcium exchanger protein CLFO_RS00475 PF00581 Rhodanese-like domain CLFO_RS00475 PF17773 UPF0176 acylphosphatase like domain CLFO_RS00475 PF12368 Rhodanase C-terminal CLFO_RS00485 PF14034 Sporulation protein YtrH CLFO_RS00495 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS00495 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLFO_RS00500 PF03806 AbgT putative transporter family CLFO_RS00505 PF01546 Peptidase family M20/M25/M40 CLFO_RS00505 PF07687 Peptidase dimerisation domain CLFO_RS00510 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLFO_RS00510 PF01276 Orn/Lys/Arg decarboxylase, major domain CLFO_RS00520 PF08757 CotH kinase protein CLFO_RS00525 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS00525 PF01225 Mur ligase family, catalytic domain CLFO_RS00525 PF08245 Mur ligase middle domain CLFO_RS00530 PF09182 Bacterial purine repressor, N-terminal CLFO_RS00530 PF00156 Phosphoribosyl transferase domain CLFO_RS00535 PF04026 SpoVG CLFO_RS00540 PF12804 MobA-like NTP transferase domain CLFO_RS00540 PF14602 Hexapeptide repeat of succinyl-transferase CLFO_RS00540 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS00545 PF14572 Phosphoribosyl synthetase-associated domain CLFO_RS00545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLFO_RS00550 PF01195 Peptidyl-tRNA hydrolase CLFO_RS00560 PF03461 TRCF domain CLFO_RS00560 PF02559 CarD-like/TRCF domain CLFO_RS00560 PF00270 DEAD/DEAH box helicase CLFO_RS00560 PF00271 Helicase conserved C-terminal domain CLFO_RS00560 PF17757 UvrB interaction domain CLFO_RS00570 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLFO_RS00570 PF15714 Stage V sporulation protein T C-terminal, transcription factor CLFO_RS00575 PF14667 Polysaccharide biosynthesis C-terminal domain CLFO_RS00575 PF01943 Polysaccharide biosynthesis protein CLFO_RS00580 PF03819 MazG nucleotide pyrophosphohydrolase domain CLFO_RS00580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLFO_RS00585 PF00216 Bacterial DNA-binding protein CLFO_RS00590 PF01479 S4 domain CLFO_RS00595 PF08486 Stage II sporulation protein CLFO_RS00600 PF07873 YabP family CLFO_RS00615 PF00575 S1 RNA binding domain CLFO_RS00620 PF02541 Ppx/GppA phosphatase family CLFO_RS00625 PF07228 Stage II sporulation protein E (SpoIIE) CLFO_RS00655 PF06418 CTP synthase N-terminus CLFO_RS00655 PF00117 Glutamine amidotransferase class-I CLFO_RS00690 PF00483 Nucleotidyl transferase CLFO_RS00695 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLFO_RS00700 PF16363 GDP-mannose 4,6 dehydratase CLFO_RS00705 PF01061 ABC-2 type transporter CLFO_RS00710 PF00005 ABC transporter CLFO_RS00710 PF14524 Wzt C-terminal domain CLFO_RS00715 PF00535 Glycosyl transferase family 2 CLFO_RS00725 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CLFO_RS00725 PF00535 Glycosyl transferase family 2 CLFO_RS00730 PF00884 Sulfatase CLFO_RS00735 PF00781 Diacylglycerol kinase catalytic domain CLFO_RS00745 PF02397 Bacterial sugar transferase CLFO_RS00750 PF04321 RmlD substrate binding domain CLFO_RS00760 PF00395 S-layer homology domain CLFO_RS00760 PF00963 Cohesin domain CLFO_RS00775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLFO_RS00780 PF00873 AcrB/AcrD/AcrF family CLFO_RS00790 PF00483 Nucleotidyl transferase CLFO_RS00800 PF00535 Glycosyl transferase family 2 CLFO_RS00830 PF13393 Histidyl-tRNA synthetase CLFO_RS00835 PF01634 ATP phosphoribosyltransferase CLFO_RS00840 PF00815 Histidinol dehydrogenase CLFO_RS00845 PF00155 Aminotransferase class I and II CLFO_RS00850 PF00475 Imidazoleglycerol-phosphate dehydratase CLFO_RS00855 PF00117 Glutamine amidotransferase class-I CLFO_RS00860 PF00977 Histidine biosynthesis protein CLFO_RS00865 PF00977 Histidine biosynthesis protein CLFO_RS00870 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLFO_RS00870 PF01502 Phosphoribosyl-AMP cyclohydrolase CLFO_RS00875 PF00209 Sodium:neurotransmitter symporter family CLFO_RS00880 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLFO_RS00885 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CLFO_RS00890 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CLFO_RS00895 PF07497 Rho termination factor, RNA-binding domain CLFO_RS00895 PF07498 Rho termination factor, N-terminal domain CLFO_RS00895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLFO_RS00900 PF01197 Ribosomal protein L31 CLFO_RS00905 PF00265 Thymidine kinase CLFO_RS00915 PF07136 Protein of unknown function (DUF1385) CLFO_RS00920 PF05175 Methyltransferase small domain CLFO_RS00920 PF17827 PrmC N-terminal domain CLFO_RS00925 PF00472 RF-1 domain CLFO_RS00925 PF03462 PCRF domain CLFO_RS00930 PF02535 ZIP Zinc transporter CLFO_RS00935 PF16697 Inner membrane component of T3SS, cytoplasmic domain CLFO_RS00940 PF01098 Cell cycle protein CLFO_RS00945 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS00945 PF03717 Penicillin-binding Protein dimerisation domain CLFO_RS00945 PF05223 NTF2-like N-terminal transpeptidase domain CLFO_RS00950 PF01300 Telomere recombination CLFO_RS00950 PF03481 Putative GTP-binding controlling metal-binding CLFO_RS00955 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLFO_RS00960 PF02502 Ribose/Galactose Isomerase CLFO_RS00970 PF14437 MafB19-like deaminase CLFO_RS00975 PF00953 Glycosyl transferase family 4 CLFO_RS00980 PF02350 UDP-N-acetylglucosamine 2-epimerase CLFO_RS00995 PF00119 ATP synthase A chain CLFO_RS01000 PF00137 ATP synthase subunit C CLFO_RS01005 PF00137 ATP synthase subunit C CLFO_RS01010 PF00430 ATP synthase B/B' CF(0) CLFO_RS01015 PF00213 ATP synthase delta (OSCP) subunit CLFO_RS01020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLFO_RS01020 PF00306 ATP synthase alpha/beta chain, C terminal domain CLFO_RS01020 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLFO_RS01025 PF00231 ATP synthase CLFO_RS01030 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLFO_RS01030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLFO_RS01035 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLFO_RS01035 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLFO_RS01055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLFO_RS01060 PF08486 Stage II sporulation protein CLFO_RS01070 PF12116 Stage III sporulation protein D CLFO_RS01080 PF00460 Flagella basal body rod protein CLFO_RS01080 PF00460 Flagella basal body rod protein CLFO_RS01080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLFO_RS01080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLFO_RS01085 PF00460 Flagella basal body rod protein CLFO_RS01085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLFO_RS01095 PF07977 FabA-like domain CLFO_RS01105 PF13807 G-rich domain on putative tyrosine kinase CLFO_RS01105 PF02706 Chain length determinant protein CLFO_RS01110 PF13614 AAA domain CLFO_RS01120 PF02719 Polysaccharide biosynthesis protein CLFO_RS01125 PF02397 Bacterial sugar transferase CLFO_RS01135 PF13439 Glycosyltransferase Family 4 CLFO_RS01135 PF00534 Glycosyl transferases group 1 CLFO_RS01140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLFO_RS01140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLFO_RS01140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLFO_RS01155 PF00534 Glycosyl transferases group 1 CLFO_RS01175 PF01370 NAD dependent epimerase/dehydratase family CLFO_RS01180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLFO_RS01180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLFO_RS01180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLFO_RS01190 PF00483 Nucleotidyl transferase CLFO_RS01220 PF04754 Putative transposase, YhgA-like CLFO_RS01250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLFO_RS01275 PF00395 S-layer homology domain CLFO_RS01280 PF00963 Cohesin domain CLFO_RS01280 PF00395 S-layer homology domain CLFO_RS01285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLFO_RS01285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLFO_RS01285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLFO_RS01285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLFO_RS01290 PF00072 Response regulator receiver domain CLFO_RS01290 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS01295 PF00989 PAS fold CLFO_RS01295 PF16736 Single Cache-like CLFO_RS01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS01295 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS01315 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLFO_RS01315 PF02772 S-adenosylmethionine synthetase, central domain CLFO_RS01315 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLFO_RS01330 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CLFO_RS01330 PF13538 UvrD-like helicase C-terminal domain CLFO_RS01330 PF14490 Helix-hairpin-helix containing domain CLFO_RS01335 PF00156 Phosphoribosyl transferase domain CLFO_RS01355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLFO_RS01355 PF00460 Flagella basal body rod protein CLFO_RS01360 PF00669 Bacterial flagellin N-terminal helical region CLFO_RS01360 PF00700 Bacterial flagellin C-terminal helical region CLFO_RS01365 PF02623 FliW protein CLFO_RS01370 PF02599 Global regulator protein family CLFO_RS01375 PF00669 Bacterial flagellin N-terminal helical region CLFO_RS01375 PF00700 Bacterial flagellin C-terminal helical region CLFO_RS01385 PF00483 Nucleotidyl transferase CLFO_RS01390 PF16363 GDP-mannose 4,6 dehydratase CLFO_RS01395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLFO_RS01410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLFO_RS01410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLFO_RS01430 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS01430 PF00501 AMP-binding enzyme CLFO_RS01435 PF01648 4'-phosphopantetheinyl transferase superfamily CLFO_RS01440 PF02350 UDP-N-acetylglucosamine 2-epimerase CLFO_RS01445 PF08666 SAF domain CLFO_RS01445 PF03102 NeuB family CLFO_RS01450 PF02348 Cytidylyltransferase CLFO_RS01450 PF13472 GDSL-like Lipase/Acylhydrolase family CLFO_RS01455 PF00535 Glycosyl transferase family 2 CLFO_RS01460 PF01370 NAD dependent epimerase/dehydratase family CLFO_RS01465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLFO_RS01475 PF02719 Polysaccharide biosynthesis protein CLFO_RS01480 PF02348 Cytidylyltransferase CLFO_RS01495 PF08666 SAF domain CLFO_RS01495 PF03102 NeuB family CLFO_RS01515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLFO_RS01550 PF01618 MotA/TolQ/ExbB proton channel family CLFO_RS01555 PF00691 OmpA family CLFO_RS01555 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLFO_RS01565 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS01565 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLFO_RS01565 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLFO_RS01565 PF04324 BFD-like [2Fe-2S] binding domain CLFO_RS01565 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLFO_RS01580 PF02541 Ppx/GppA phosphatase family CLFO_RS01585 PF02503 Polyphosphate kinase middle domain CLFO_RS01585 PF13090 Polyphosphate kinase C-terminal domain 2 CLFO_RS01585 PF13089 Polyphosphate kinase N-terminal domain CLFO_RS01585 PF17941 Polyphosphate kinase C-terminal domain 1 CLFO_RS01595 PF06580 Histidine kinase CLFO_RS01595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS01595 PF02743 Cache domain CLFO_RS01595 PF00672 HAMP domain CLFO_RS01600 PF01497 Periplasmic binding protein CLFO_RS01600 PF12833 Helix-turn-helix domain CLFO_RS01605 PF00920 Dehydratase family CLFO_RS01610 PF13458 Periplasmic binding protein CLFO_RS01615 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS01620 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS01620 PF11862 Domain of unknown function (DUF3382) CLFO_RS01625 PF00005 ABC transporter CLFO_RS01625 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLFO_RS01630 PF00005 ABC transporter CLFO_RS01635 PF01063 Amino-transferase class IV CLFO_RS01650 PF03646 FlaG protein CLFO_RS01655 PF07196 Flagellin hook IN motif CLFO_RS01655 PF07195 Flagellar hook-associated protein 2 C-terminus CLFO_RS01655 PF02465 Flagellar hook-associated protein 2 N-terminus CLFO_RS01660 PF02561 Flagellar protein FliS CLFO_RS01670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLFO_RS01670 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CLFO_RS01680 PF07516 SecA Wing and Scaffold domain CLFO_RS01680 PF07517 SecA DEAD-like domain CLFO_RS01680 PF02810 SEC-C motif CLFO_RS01680 PF01043 SecA preprotein cross-linking domain CLFO_RS01685 PF00472 RF-1 domain CLFO_RS01685 PF03462 PCRF domain CLFO_RS01705 PF00700 Bacterial flagellin C-terminal helical region CLFO_RS01705 PF00669 Bacterial flagellin N-terminal helical region CLFO_RS01705 PF00700 Bacterial flagellin C-terminal helical region CLFO_RS01705 PF00669 Bacterial flagellin N-terminal helical region CLFO_RS01720 PF16921 Tex protein YqgF-like domain CLFO_RS01720 PF17674 HHH domain CLFO_RS01720 PF00575 S1 RNA binding domain CLFO_RS01720 PF09371 Tex-like protein N-terminal domain CLFO_RS01725 PF00005 ABC transporter CLFO_RS01730 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS01730 PF00072 Response regulator receiver domain CLFO_RS01735 PF13407 Periplasmic binding protein domain CLFO_RS01740 PF00005 ABC transporter CLFO_RS01745 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS01750 PF00107 Zinc-binding dehydrogenase CLFO_RS01750 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS01755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLFO_RS01755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLFO_RS01760 PF00596 Class II Aldolase and Adducin N-terminal domain CLFO_RS01780 PF12822 ECF transporter, substrate-specific component CLFO_RS01790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLFO_RS01795 PF06580 Histidine kinase CLFO_RS01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS01800 PF04397 LytTr DNA-binding domain CLFO_RS01800 PF00072 Response regulator receiver domain CLFO_RS01805 PF00350 Dynamin family CLFO_RS01810 PF00350 Dynamin family CLFO_RS01815 PF01435 Peptidase family M48 CLFO_RS01820 PF00350 Dynamin family CLFO_RS01830 PF00814 Glycoprotease family CLFO_RS01835 PF00583 Acetyltransferase (GNAT) family CLFO_RS01845 PF02687 FtsX-like permease family CLFO_RS01845 PF12704 MacB-like periplasmic core domain CLFO_RS01850 PF02687 FtsX-like permease family CLFO_RS01850 PF12704 MacB-like periplasmic core domain CLFO_RS01855 PF00005 ABC transporter CLFO_RS01860 PF00814 Glycoprotease family CLFO_RS01865 PF00005 ABC transporter CLFO_RS01865 PF16326 ABC transporter C-terminal domain CLFO_RS01865 PF12848 ABC transporter CLFO_RS01870 PF02629 CoA binding domain CLFO_RS01870 PF06971 Putative DNA-binding protein N-terminus CLFO_RS01875 PF01047 MarR family CLFO_RS01880 PF12838 4Fe-4S dicluster domain CLFO_RS01890 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLFO_RS01890 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLFO_RS01895 PF01636 Phosphotransferase enzyme family CLFO_RS01900 PF00596 Class II Aldolase and Adducin N-terminal domain CLFO_RS01925 PF04474 Protein of unknown function (DUF554) CLFO_RS01930 PF00166 Chaperonin 10 Kd subunit CLFO_RS01935 PF00118 TCP-1/cpn60 chaperonin family CLFO_RS01940 PF07875 Coat F domain CLFO_RS01960 PF00571 CBS domain CLFO_RS01960 PF00478 IMP dehydrogenase / GMP reductase domain CLFO_RS01965 PF00117 Glutamine amidotransferase class-I CLFO_RS01965 PF00958 GMP synthase C terminal domain CLFO_RS01975 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CLFO_RS02005 PF00860 Permease family CLFO_RS02010 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CLFO_RS02010 PF02222 ATP-grasp domain CLFO_RS02015 PF00731 AIR carboxylase CLFO_RS02020 PF01259 SAICAR synthetase CLFO_RS02025 PF00156 Phosphoribosyl transferase domain CLFO_RS02030 PF00586 AIR synthase related protein, N-terminal domain CLFO_RS02030 PF02769 AIR synthase related protein, C-terminal domain CLFO_RS02035 PF00551 Formyl transferase CLFO_RS02040 PF02142 MGS-like domain CLFO_RS02040 PF01808 AICARFT/IMPCHase bienzyme CLFO_RS02045 PF02844 Phosphoribosylglycinamide synthetase, N domain CLFO_RS02045 PF02843 Phosphoribosylglycinamide synthetase, C domain CLFO_RS02045 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLFO_RS02050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS02050 PF00672 HAMP domain CLFO_RS02050 PF02743 Cache domain CLFO_RS02060 PF03180 NLPA lipoprotein CLFO_RS02065 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS02070 PF09383 NIL domain CLFO_RS02070 PF00005 ABC transporter CLFO_RS02075 PF01371 Trp repressor protein CLFO_RS02080 PF13840 ACT domain CLFO_RS02080 PF00696 Amino acid kinase family CLFO_RS02085 PF01012 Electron transfer flavoprotein domain CLFO_RS02090 PF00766 Electron transfer flavoprotein FAD-binding domain CLFO_RS02090 PF01012 Electron transfer flavoprotein domain CLFO_RS02095 PF01565 FAD binding domain CLFO_RS02095 PF02913 FAD linked oxidases, C-terminal domain CLFO_RS02115 PF02811 PHP domain CLFO_RS02125 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS02125 PF00037 4Fe-4S binding domain CLFO_RS02125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS02130 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLFO_RS02130 PF02256 Iron hydrogenase small subunit CLFO_RS02130 PF00037 4Fe-4S binding domain CLFO_RS02130 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLFO_RS02135 PF00072 Response regulator receiver domain CLFO_RS02135 PF03861 ANTAR domain CLFO_RS02140 PF07568 Histidine kinase CLFO_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS02140 PF12282 Signal transduction histidine kinase CLFO_RS02145 PF06277 Ethanolamine utilisation protein EutA CLFO_RS02150 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CLFO_RS02155 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CLFO_RS02160 PF00936 BMC domain CLFO_RS02170 PF00171 Aldehyde dehydrogenase family CLFO_RS02170 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS02175 PF00936 BMC domain CLFO_RS02180 PF01923 Cobalamin adenosyltransferase CLFO_RS02185 PF06130 Phosphate propanoyltransferase CLFO_RS02195 PF03319 Ethanolamine utilisation protein EutN/carboxysome CLFO_RS02200 PF13375 RnfC Barrel sandwich hybrid domain CLFO_RS02200 PF10531 SLBB domain CLFO_RS02200 PF12838 4Fe-4S dicluster domain CLFO_RS02200 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS02210 PF04346 Ethanolamine utilisation protein, EutH CLFO_RS02215 PF00753 Metallo-beta-lactamase superfamily CLFO_RS02240 PF00793 DAHP synthetase I family CLFO_RS02240 PF18152 DAHP synthase ferredoxin-like domain CLFO_RS02245 PF04715 Anthranilate synthase component I, N terminal region CLFO_RS02245 PF00425 chorismate binding enzyme CLFO_RS02250 PF00117 Glutamine amidotransferase class-I CLFO_RS02250 PF00591 Glycosyl transferase family, a/b domain CLFO_RS02250 PF02885 Glycosyl transferase family, helical bundle domain CLFO_RS02255 PF00591 Glycosyl transferase family, a/b domain CLFO_RS02255 PF02885 Glycosyl transferase family, helical bundle domain CLFO_RS02260 PF00218 Indole-3-glycerol phosphate synthase CLFO_RS02265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLFO_RS02270 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS02275 PF00290 Tryptophan synthase alpha chain CLFO_RS02280 PF02153 Prephenate dehydrogenase CLFO_RS02280 PF01842 ACT domain CLFO_RS02285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLFO_RS02290 PF01817 Chorismate mutase type II CLFO_RS02290 PF00800 Prephenate dehydratase CLFO_RS02290 PF01842 ACT domain CLFO_RS02295 PF01264 Chorismate synthase CLFO_RS02300 PF01761 3-dehydroquinate synthase CLFO_RS02305 PF01202 Shikimate kinase CLFO_RS02310 PF00989 PAS fold CLFO_RS02310 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS02310 PF18698 Histidine kinase sensor domain CLFO_RS02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS02310 PF00672 HAMP domain CLFO_RS02315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS02315 PF12729 Four helix bundle sensory module for signal transduction CLFO_RS02315 PF00672 HAMP domain CLFO_RS02320 PF00580 UvrD/REP helicase N-terminal domain CLFO_RS02320 PF13361 UvrD-like helicase C-terminal domain CLFO_RS02325 PF12826 Helix-hairpin-helix motif CLFO_RS02325 PF01653 NAD-dependent DNA ligase adenylation domain CLFO_RS02325 PF00533 BRCA1 C Terminus (BRCT) domain CLFO_RS02325 PF03120 NAD-dependent DNA ligase OB-fold domain CLFO_RS02335 PF02915 Rubrerythrin CLFO_RS02345 PF07670 Nucleoside recognition CLFO_RS02345 PF02421 Ferrous iron transport protein B CLFO_RS02345 PF07664 Ferrous iron transport protein B C terminus CLFO_RS02350 PF03059 Nicotianamine synthase protein CLFO_RS02365 PF00586 AIR synthase related protein, N-terminal domain CLFO_RS02365 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLFO_RS02365 PF02769 AIR synthase related protein, C-terminal domain CLFO_RS02370 PF01520 N-acetylmuramoyl-L-alanine amidase CLFO_RS02370 PF04122 Putative cell wall binding repeat 2 CLFO_RS02375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLFO_RS02385 PF01138 3' exoribonuclease family, domain 1 CLFO_RS02385 PF03725 3' exoribonuclease family, domain 2 CLFO_RS02390 PF01725 Ham1 family CLFO_RS02395 PF12850 Calcineurin-like phosphoesterase superfamily domain CLFO_RS02435 PF13936 Helix-turn-helix domain CLFO_RS02435 PF13936 Helix-turn-helix domain CLFO_RS02445 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLFO_RS02445 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CLFO_RS02450 PF00374 Nickel-dependent hydrogenase CLFO_RS02465 PF00708 Acylphosphatase CLFO_RS02465 PF01300 Telomere recombination CLFO_RS02465 PF07503 HypF finger CLFO_RS02465 PF17788 HypF Kae1-like domain CLFO_RS02475 PF01924 Hydrogenase formation hypA family CLFO_RS02480 PF00586 AIR synthase related protein, N-terminal domain CLFO_RS02480 PF02769 AIR synthase related protein, C-terminal domain CLFO_RS02485 PF07883 Cupin domain CLFO_RS02495 PF00999 Sodium/hydrogen exchanger family CLFO_RS02500 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS02515 PF02073 Thermophilic metalloprotease (M29) CLFO_RS02520 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLFO_RS02525 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS02530 PF00005 ABC transporter CLFO_RS02540 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS02540 PF00107 Zinc-binding dehydrogenase CLFO_RS02545 PF03099 Biotin/lipoate A/B protein ligase family CLFO_RS02550 PF04055 Radical SAM superfamily CLFO_RS02555 PF00158 Sigma-54 interaction domain CLFO_RS02555 PF02954 Bacterial regulatory protein, Fis family CLFO_RS02555 PF13426 PAS domain CLFO_RS02565 PF00676 Dehydrogenase E1 component CLFO_RS02570 PF02780 Transketolase, C-terminal domain CLFO_RS02570 PF02779 Transketolase, pyrimidine binding domain CLFO_RS02575 PF01513 ATP-NAD kinase CLFO_RS02580 PF02817 e3 binding domain CLFO_RS02580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLFO_RS02580 PF00364 Biotin-requiring enzyme CLFO_RS02585 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS02585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLFO_RS02595 PF00158 Sigma-54 interaction domain CLFO_RS02595 PF13426 PAS domain CLFO_RS02595 PF02954 Bacterial regulatory protein, Fis family CLFO_RS02600 PF17042 Nucleotide-binding C-terminal domain CLFO_RS02600 PF07005 Sugar-binding N-terminal domain CLFO_RS02605 PF02447 GntP family permease CLFO_RS02615 PF00920 Dehydratase family CLFO_RS02620 PF02548 Ketopantoate hydroxymethyltransferase CLFO_RS02630 PF00395 S-layer homology domain CLFO_RS02630 PF00963 Cohesin domain CLFO_RS02640 PF13847 Methyltransferase domain CLFO_RS02680 PF17863 AAA lid domain CLFO_RS02680 PF07726 ATPase family associated with various cellular activities (AAA) CLFO_RS02710 PF00331 Glycosyl hydrolase family 10 CLFO_RS02710 PF06452 Carbohydrate family 9 binding domain-like CLFO_RS02710 PF02018 Carbohydrate binding domain CLFO_RS02710 PF00395 S-layer homology domain CLFO_RS02715 PF04461 Protein of unknown function (DUF520) CLFO_RS02720 PF00483 Nucleotidyl transferase CLFO_RS02725 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CLFO_RS02725 PF10091 Putative glucoamylase CLFO_RS02725 PF06165 Glycosyltransferase family 36 CLFO_RS02740 PF00005 ABC transporter CLFO_RS02745 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS02760 PF03707 Bacterial signalling protein N terminal repeat CLFO_RS02760 PF00563 EAL domain CLFO_RS02760 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS02765 PF01008 Initiation factor 2 subunit family CLFO_RS02770 PF02535 ZIP Zinc transporter CLFO_RS02775 PF01522 Polysaccharide deacetylase CLFO_RS02780 PF00395 S-layer homology domain CLFO_RS02780 PF01520 N-acetylmuramoyl-L-alanine amidase CLFO_RS02790 PF13393 Histidyl-tRNA synthetase CLFO_RS02795 PF03063 Prismane/CO dehydrogenase family CLFO_RS02810 PF00005 ABC transporter CLFO_RS02815 PF08331 Domain of unknown function (DUF1730) CLFO_RS02830 PF00258 Flavodoxin CLFO_RS02835 PF02421 Ferrous iron transport protein B CLFO_RS02835 PF07670 Nucleoside recognition CLFO_RS02835 PF07664 Ferrous iron transport protein B C terminus CLFO_RS02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS02840 PF00672 HAMP domain CLFO_RS02845 PF18324 Hypothetical protein TT1725 CLFO_RS02845 PF00180 Isocitrate/isopropylmalate dehydrogenase CLFO_RS02850 PF00330 Aconitase family (aconitate hydratase) CLFO_RS02855 PF00682 HMGL-like CLFO_RS02860 PF01584 CheW-like domain CLFO_RS02865 PF00149 Calcineurin-like phosphoesterase CLFO_RS02865 PF12320 Type 5 capsule protein repressor C-terminal domain CLFO_RS02870 PF13476 AAA domain CLFO_RS02880 PF06071 Protein of unknown function (DUF933) CLFO_RS02880 PF01926 50S ribosome-binding GTPase CLFO_RS02885 PF00731 AIR carboxylase CLFO_RS02890 PF02540 NAD synthase CLFO_RS02895 PF01969 Protein of unknown function DUF111 CLFO_RS02900 PF03180 NLPA lipoprotein CLFO_RS02905 PF00005 ABC transporter CLFO_RS02905 PF09383 NIL domain CLFO_RS02910 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS02915 PF00501 AMP-binding enzyme CLFO_RS02915 PF14535 AMP-binding enzyme C-terminal domain CLFO_RS02920 PF00155 Aminotransferase class I and II CLFO_RS02925 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLFO_RS02935 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLFO_RS02935 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLFO_RS02940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS02955 PF10960 BhlA holin family CLFO_RS02975 PF08264 Anticodon-binding domain of tRNA CLFO_RS02975 PF00133 tRNA synthetases class I (I, L, M and V) CLFO_RS02985 PF13686 DsrE/DsrF/DrsH-like family CLFO_RS02990 PF00266 Aminotransferase class-V CLFO_RS02995 PF00364 Biotin-requiring enzyme CLFO_RS02995 PF02785 Biotin carboxylase C-terminal domain CLFO_RS02995 PF00289 Biotin carboxylase, N-terminal domain CLFO_RS02995 PF02436 Conserved carboxylase domain CLFO_RS02995 PF00682 HMGL-like CLFO_RS02995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLFO_RS03005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS03005 PF09308 LuxQ, periplasmic CLFO_RS03005 PF00072 Response regulator receiver domain CLFO_RS03005 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS03010 PF00356 Bacterial regulatory proteins, lacI family CLFO_RS03015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLFO_RS03015 PF05698 Bacterial trigger factor protein (TF) C-terminus CLFO_RS03015 PF05697 Bacterial trigger factor protein (TF) CLFO_RS03020 PF00574 Clp protease CLFO_RS03025 PF07724 AAA domain (Cdc48 subfamily) CLFO_RS03025 PF10431 C-terminal, D2-small domain, of ClpB protein CLFO_RS03025 PF06689 ClpX C4-type zinc finger CLFO_RS03035 PF02417 Chromate transporter CLFO_RS03040 PF05362 Lon protease (S16) C-terminal proteolytic domain CLFO_RS03040 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS03045 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLFO_RS03045 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS03045 PF05362 Lon protease (S16) C-terminal proteolytic domain CLFO_RS03050 PF01926 50S ribosome-binding GTPase CLFO_RS03060 PF00301 Rubredoxin CLFO_RS03065 PF00171 Aldehyde dehydrogenase family CLFO_RS03070 PF00696 Amino acid kinase family CLFO_RS03075 PF03807 NADP oxidoreductase coenzyme F420-dependent CLFO_RS03075 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLFO_RS03080 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CLFO_RS03080 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CLFO_RS03085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLFO_RS03085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLFO_RS03110 PF04647 Accessory gene regulator B CLFO_RS03120 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS03120 PF00672 HAMP domain CLFO_RS03130 PF13091 PLD-like domain CLFO_RS03130 PF13396 Phospholipase_D-nuclease N-terminal CLFO_RS03145 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLFO_RS03155 PF07702 UTRA domain CLFO_RS03155 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS03165 PF07969 Amidohydrolase family CLFO_RS03170 PF01022 Bacterial regulatory protein, arsR family CLFO_RS03175 PF06953 Arsenical resistance operon trans-acting repressor ArsD CLFO_RS03180 PF02374 Anion-transporting ATPase CLFO_RS03185 PF02374 Anion-transporting ATPase CLFO_RS03190 PF13426 PAS domain CLFO_RS03190 PF00158 Sigma-54 interaction domain CLFO_RS03190 PF02954 Bacterial regulatory protein, Fis family CLFO_RS03200 PF00873 AcrB/AcrD/AcrF family CLFO_RS03205 PF00266 Aminotransferase class-V CLFO_RS03210 PF03063 Prismane/CO dehydrogenase family CLFO_RS03215 PF13649 Methyltransferase domain CLFO_RS03220 PF13545 Crp-like helix-turn-helix domain CLFO_RS03220 PF00027 Cyclic nucleotide-binding domain CLFO_RS03230 PF02583 Metal-sensitive transcriptional repressor CLFO_RS03235 PF01022 Bacterial regulatory protein, arsR family CLFO_RS03240 PF01758 Sodium Bile acid symporter family CLFO_RS03245 PF01910 Thiamine-binding protein CLFO_RS03250 PF04309 Glycerol-3-phosphate responsive antiterminator CLFO_RS03255 PF00230 Major intrinsic protein CLFO_RS03260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLFO_RS03260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLFO_RS03265 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS03265 PF04324 BFD-like [2Fe-2S] binding domain CLFO_RS03270 PF04324 BFD-like [2Fe-2S] binding domain CLFO_RS03270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS03280 PF00158 Sigma-54 interaction domain CLFO_RS03280 PF00072 Response regulator receiver domain CLFO_RS03280 PF02954 Bacterial regulatory protein, Fis family CLFO_RS03295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS03295 PF00672 HAMP domain CLFO_RS03295 PF12729 Four helix bundle sensory module for signal transduction CLFO_RS03305 PF00579 tRNA synthetases class I (W and Y) CLFO_RS03315 PF05949 Bacterial protein of unknown function (DUF881) CLFO_RS03325 PF00491 Arginase family CLFO_RS03330 PF17284 Spermidine synthase tetramerisation domain CLFO_RS03355 PF00072 Response regulator receiver domain CLFO_RS03355 PF04397 LytTr DNA-binding domain CLFO_RS03375 PF02954 Bacterial regulatory protein, Fis family CLFO_RS03375 PF13426 PAS domain CLFO_RS03375 PF00158 Sigma-54 interaction domain CLFO_RS03380 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS03385 PF00480 ROK family CLFO_RS03395 PF00872 Transposase, Mutator family CLFO_RS03405 PF00082 Subtilase family CLFO_RS03410 PF05593 RHS Repeat CLFO_RS03440 PF05593 RHS Repeat CLFO_RS03455 PF00239 Resolvase, N terminal domain CLFO_RS03455 PF02796 Helix-turn-helix domain of resolvase CLFO_RS03520 PF04986 Putative transposase CLFO_RS03520 PF14319 Transposase zinc-binding domain CLFO_RS03525 PF00472 RF-1 domain CLFO_RS03525 PF03462 PCRF domain CLFO_RS03530 PF01139 tRNA-splicing ligase RtcB CLFO_RS03535 PF10057 Uncharacterized conserved protein (DUF2294) CLFO_RS03545 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLFO_RS03545 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLFO_RS03550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS03565 PF02464 Competence-damaged protein CLFO_RS03565 PF00994 Probable molybdopterin binding domain CLFO_RS03565 PF18146 Damage-inducible protein CinA KH domain CLFO_RS03585 PF12804 MobA-like NTP transferase domain CLFO_RS03600 PF00550 Phosphopantetheine attachment site CLFO_RS03605 PF16916 Dimerisation domain of Zinc Transporter CLFO_RS03605 PF01545 Cation efflux family CLFO_RS03610 PF02690 Na+/Pi-cotransporter CLFO_RS03615 PF03575 Peptidase family S51 CLFO_RS03620 PF08245 Mur ligase middle domain CLFO_RS03620 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS03620 PF08443 RimK-like ATP-grasp domain CLFO_RS03630 PF02424 ApbE family CLFO_RS03635 PF00082 Subtilase family CLFO_RS03640 PF00395 S-layer homology domain CLFO_RS03640 PF00963 Cohesin domain CLFO_RS03655 PF01476 LysM domain CLFO_RS03655 PF03734 L,D-transpeptidase catalytic domain CLFO_RS03660 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLFO_RS03660 PF02574 Homocysteine S-methyltransferase CLFO_RS03660 PF02607 B12 binding domain CLFO_RS03660 PF02310 B12 binding domain CLFO_RS03660 PF00809 Pterin binding enzyme CLFO_RS03665 PF00989 PAS fold CLFO_RS03665 PF00672 HAMP domain CLFO_RS03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS03665 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS03665 PF18698 Histidine kinase sensor domain CLFO_RS03670 PF00909 Ammonium Transporter Family CLFO_RS03675 PF00543 Nitrogen regulatory protein P-II CLFO_RS03680 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLFO_RS03680 PF00753 Metallo-beta-lactamase superfamily CLFO_RS03680 PF10996 Beta-Casp domain CLFO_RS03685 PF02308 MgtC family CLFO_RS03690 PF11871 Domain of unknown function (DUF3391) CLFO_RS03690 PF01966 HD domain CLFO_RS03695 PF00072 Response regulator receiver domain CLFO_RS03695 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS03700 PF00381 PTS HPr component phosphorylation site CLFO_RS03705 PF09339 IclR helix-turn-helix domain CLFO_RS03705 PF01614 Bacterial transcriptional regulator CLFO_RS03710 PF01081 KDPG and KHG aldolase CLFO_RS03715 PF00294 pfkB family carbohydrate kinase CLFO_RS03720 PF00294 pfkB family carbohydrate kinase CLFO_RS03730 PF08125 Mannitol dehydrogenase C-terminal domain CLFO_RS03730 PF01232 Mannitol dehydrogenase Rossmann domain CLFO_RS03735 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLFO_RS03735 PF08666 SAF domain CLFO_RS03740 PF02614 Glucuronate isomerase CLFO_RS03745 PF06580 Histidine kinase CLFO_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS03745 PF00672 HAMP domain CLFO_RS03745 PF02743 Cache domain CLFO_RS03750 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS03750 PF00072 Response regulator receiver domain CLFO_RS03755 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS03765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS03770 PF00356 Bacterial regulatory proteins, lacI family CLFO_RS03775 PF00005 ABC transporter CLFO_RS03775 PF17912 MalK OB fold domain CLFO_RS03775 PF03459 TOBE domain CLFO_RS03780 PF07470 Glycosyl Hydrolase Family 88 CLFO_RS03790 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS03795 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS03800 PF00295 Glycosyl hydrolases family 28 CLFO_RS03805 PF04962 KduI/IolB family CLFO_RS03815 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS03815 PF07729 FCD domain CLFO_RS03820 PF00107 Zinc-binding dehydrogenase CLFO_RS03820 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS03835 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS03840 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS03840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS03845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS03845 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS03850 PF03786 D-mannonate dehydratase (UxuA) CLFO_RS03855 PF01232 Mannitol dehydrogenase Rossmann domain CLFO_RS03855 PF08125 Mannitol dehydrogenase C-terminal domain CLFO_RS03860 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS03860 PF07702 UTRA domain CLFO_RS03865 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS03870 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS03875 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS03880 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS03885 PF00920 Dehydratase family CLFO_RS03890 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLFO_RS03890 PF13378 Enolase C-terminal domain-like CLFO_RS03895 PF03328 HpcH/HpaI aldolase/citrate lyase family CLFO_RS03905 PF03951 Glutamine synthetase, beta-Grasp domain CLFO_RS03905 PF00120 Glutamine synthetase, catalytic domain CLFO_RS03920 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLFO_RS03920 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLFO_RS03925 PF01960 ArgJ family CLFO_RS03930 PF00696 Amino acid kinase family CLFO_RS03935 PF00202 Aminotransferase class-III CLFO_RS03940 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLFO_RS03940 PF00117 Glutamine amidotransferase class-I CLFO_RS03945 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLFO_RS03945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLFO_RS03945 PF02142 MGS-like domain CLFO_RS03960 PF08279 HTH domain CLFO_RS03960 PF13280 WYL domain CLFO_RS04000 PF13443 Cro/C1-type HTH DNA-binding domain CLFO_RS04015 PF00072 Response regulator receiver domain CLFO_RS04015 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS04020 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS04020 PF18719 ArlS sensor domain CLFO_RS04025 PF04898 Glutamate synthase central domain CLFO_RS04025 PF01645 Conserved region in glutamate synthase CLFO_RS04025 PF01493 GXGXG motif CLFO_RS04025 PF00310 Glutamine amidotransferases class-II CLFO_RS04035 PF02915 Rubrerythrin CLFO_RS04045 PF00682 HMGL-like CLFO_RS04050 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS04055 PF00005 ABC transporter CLFO_RS04060 PF01891 Cobalt uptake substrate-specific transmembrane region CLFO_RS04075 PF00005 ABC transporter CLFO_RS04090 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS04095 PF00872 Transposase, Mutator family CLFO_RS04100 PF01145 SPFH domain / Band 7 family CLFO_RS04100 PF15975 Flotillin CLFO_RS04115 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS04115 PF00072 Response regulator receiver domain CLFO_RS04120 PF00672 HAMP domain CLFO_RS04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS04120 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS04130 PF03471 Transporter associated domain CLFO_RS04130 PF01595 Cyclin M transmembrane N-terminal domain CLFO_RS04130 PF00571 CBS domain CLFO_RS04140 PF00005 ABC transporter CLFO_RS04145 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS04155 PF04239 Protein of unknown function (DUF421) CLFO_RS04160 PF00462 Glutaredoxin CLFO_RS04165 PF13840 ACT domain CLFO_RS04165 PF00696 Amino acid kinase family CLFO_RS04175 PF12146 Serine aminopeptidase, S33 CLFO_RS04180 PF01541 GIY-YIG catalytic domain CLFO_RS04190 PF00210 Ferritin-like domain CLFO_RS04205 PF00266 Aminotransferase class-V CLFO_RS04210 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS04215 PF03590 Aspartate-ammonia ligase CLFO_RS04230 PF00679 Elongation factor G C-terminus CLFO_RS04230 PF14492 Elongation Factor G, domain II CLFO_RS04230 PF00009 Elongation factor Tu GTP binding domain CLFO_RS04230 PF03144 Elongation factor Tu domain 2 CLFO_RS04240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS04240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS04240 PF00037 4Fe-4S binding domain CLFO_RS04245 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS04245 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLFO_RS04245 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS04265 PF00085 Thioredoxin CLFO_RS04275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLFO_RS04280 PF02504 Fatty acid synthesis protein CLFO_RS04285 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLFO_RS04295 PF02028 BCCT, betaine/carnitine/choline family transporter CLFO_RS04300 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS04320 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLFO_RS04330 PF07136 Protein of unknown function (DUF1385) CLFO_RS04350 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLFO_RS04355 PF01098 Cell cycle protein CLFO_RS04360 PF00571 CBS domain CLFO_RS04360 PF01769 Divalent cation transporter CLFO_RS04360 PF03448 MgtE intracellular N domain CLFO_RS04365 PF01471 Putative peptidoglycan binding domain CLFO_RS04365 PF07486 Cell Wall Hydrolase CLFO_RS04370 PF14620 YpeB sporulation CLFO_RS04375 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLFO_RS04380 PF04055 Radical SAM superfamily CLFO_RS04380 PF12544 Lysine-2,3-aminomutase CLFO_RS04395 PF00342 Phosphoglucose isomerase CLFO_RS04400 PF01177 Asp/Glu/Hydantoin racemase CLFO_RS04405 PF13492 GAF domain CLFO_RS04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS04405 PF06580 Histidine kinase CLFO_RS04405 PF07694 5TMR of 5TMR-LYT CLFO_RS04410 PF04397 LytTr DNA-binding domain CLFO_RS04410 PF00072 Response regulator receiver domain CLFO_RS04425 PF14667 Polysaccharide biosynthesis C-terminal domain CLFO_RS04425 PF01943 Polysaccharide biosynthesis protein CLFO_RS04445 PF13545 Crp-like helix-turn-helix domain CLFO_RS04445 PF00027 Cyclic nucleotide-binding domain CLFO_RS04450 PF01226 Formate/nitrite transporter CLFO_RS04455 PF17862 AAA+ lid domain CLFO_RS04455 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS04455 PF01434 Peptidase family M41 CLFO_RS04465 PF17910 FeoB cytosolic helical domain CLFO_RS04465 PF07664 Ferrous iron transport protein B C terminus CLFO_RS04465 PF02421 Ferrous iron transport protein B CLFO_RS04465 PF07670 Nucleoside recognition CLFO_RS04480 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS04480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLFO_RS04505 PF10458 Valyl tRNA synthetase tRNA binding arm CLFO_RS04505 PF00133 tRNA synthetases class I (I, L, M and V) CLFO_RS04505 PF08264 Anticodon-binding domain of tRNA CLFO_RS04510 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS04510 PF08245 Mur ligase middle domain CLFO_RS04525 PF04239 Protein of unknown function (DUF421) CLFO_RS04530 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLFO_RS04535 PF07451 Stage V sporulation protein AD (SpoVAD) CLFO_RS04540 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLFO_RS04550 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLFO_RS04555 PF08331 Domain of unknown function (DUF1730) CLFO_RS04570 PF13649 Methyltransferase domain CLFO_RS04575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS04585 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS04585 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS04590 PF00005 ABC transporter CLFO_RS04590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS04600 PF02690 Na+/Pi-cotransporter CLFO_RS04605 PF02632 BioY family CLFO_RS04610 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CLFO_RS04610 PF01522 Polysaccharide deacetylase CLFO_RS04615 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS04615 PF08245 Mur ligase middle domain CLFO_RS04615 PF01225 Mur ligase family, catalytic domain CLFO_RS04625 PF01814 Hemerythrin HHE cation binding domain CLFO_RS04630 PF07670 Nucleoside recognition CLFO_RS04635 PF07670 Nucleoside recognition CLFO_RS04640 PF00120 Glutamine synthetase, catalytic domain CLFO_RS04640 PF03951 Glutamine synthetase, beta-Grasp domain CLFO_RS04650 PF00664 ABC transporter transmembrane region CLFO_RS04650 PF00005 ABC transporter CLFO_RS04670 PF07730 Histidine kinase CLFO_RS04670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS04675 PF00072 Response regulator receiver domain CLFO_RS04675 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS04680 PF14537 Cytochrome c3 CLFO_RS04680 PF00890 FAD binding domain CLFO_RS04685 PF00890 FAD binding domain CLFO_RS04685 PF04205 FMN-binding domain CLFO_RS04685 PF03358 NADPH-dependent FMN reductase CLFO_RS04690 PF03795 YCII-related domain CLFO_RS04695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS04695 PF00672 HAMP domain CLFO_RS04695 PF02743 Cache domain CLFO_RS04715 PF13007 Transposase C of IS166 homeodomain CLFO_RS04715 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS04715 PF03050 Transposase IS66 family CLFO_RS04715 PF13817 IS66 C-terminal element CLFO_RS04730 PF01757 Acyltransferase family CLFO_RS04740 PF01695 IstB-like ATP binding protein CLFO_RS04745 PF00698 Acyl transferase domain CLFO_RS04750 PF00753 Metallo-beta-lactamase superfamily CLFO_RS04755 PF00698 Acyl transferase domain CLFO_RS04755 PF03060 Nitronate monooxygenase CLFO_RS04760 PF00698 Acyl transferase domain CLFO_RS04760 PF03060 Nitronate monooxygenase CLFO_RS04765 PF14765 Polyketide synthase dehydratase CLFO_RS04765 PF00550 Phosphopantetheine attachment site CLFO_RS04765 PF08659 KR domain CLFO_RS04765 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04765 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04765 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04770 PF00550 Phosphopantetheine attachment site CLFO_RS04770 PF08242 Methyltransferase domain CLFO_RS04770 PF00668 Condensation domain CLFO_RS04770 PF00501 AMP-binding enzyme CLFO_RS04775 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04775 PF00668 Condensation domain CLFO_RS04775 PF00501 AMP-binding enzyme CLFO_RS04775 PF00975 Thioesterase domain CLFO_RS04775 PF00550 Phosphopantetheine attachment site CLFO_RS04780 PF01695 IstB-like ATP binding protein CLFO_RS04790 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04790 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04790 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04790 PF08659 KR domain CLFO_RS04790 PF00550 Phosphopantetheine attachment site CLFO_RS04790 PF14765 Polyketide synthase dehydratase CLFO_RS04795 PF08659 KR domain CLFO_RS04795 PF14765 Polyketide synthase dehydratase CLFO_RS04795 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04795 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04795 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04795 PF00550 Phosphopantetheine attachment site CLFO_RS04800 PF00550 Phosphopantetheine attachment site CLFO_RS04800 PF00668 Condensation domain CLFO_RS04800 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04800 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04800 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04800 PF08659 KR domain CLFO_RS04800 PF14765 Polyketide synthase dehydratase CLFO_RS04800 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04800 PF00501 AMP-binding enzyme CLFO_RS04805 PF08659 KR domain CLFO_RS04805 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04805 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04805 PF00550 Phosphopantetheine attachment site CLFO_RS04805 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04805 PF00668 Condensation domain CLFO_RS04805 PF14765 Polyketide synthase dehydratase CLFO_RS04805 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04805 PF00501 AMP-binding enzyme CLFO_RS04810 PF00550 Phosphopantetheine attachment site CLFO_RS04810 PF14765 Polyketide synthase dehydratase CLFO_RS04810 PF08659 KR domain CLFO_RS04810 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04810 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04810 PF00668 Condensation domain CLFO_RS04810 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04810 PF00501 AMP-binding enzyme CLFO_RS04810 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04815 PF08659 KR domain CLFO_RS04815 PF14765 Polyketide synthase dehydratase CLFO_RS04815 PF00550 Phosphopantetheine attachment site CLFO_RS04815 PF00501 AMP-binding enzyme CLFO_RS04815 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04815 PF00668 Condensation domain CLFO_RS04815 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04815 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04815 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04820 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04820 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04820 PF08242 Methyltransferase domain CLFO_RS04820 PF14765 Polyketide synthase dehydratase CLFO_RS04820 PF00550 Phosphopantetheine attachment site CLFO_RS04820 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04820 PF00975 Thioesterase domain CLFO_RS04825 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04825 PF08242 Methyltransferase domain CLFO_RS04825 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04825 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04825 PF14765 Polyketide synthase dehydratase CLFO_RS04825 PF00975 Thioesterase domain CLFO_RS04825 PF00550 Phosphopantetheine attachment site CLFO_RS04830 PF00501 AMP-binding enzyme CLFO_RS04830 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04830 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04830 PF08659 KR domain CLFO_RS04830 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04830 PF00550 Phosphopantetheine attachment site CLFO_RS04830 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04830 PF14765 Polyketide synthase dehydratase CLFO_RS04830 PF00668 Condensation domain CLFO_RS04835 PF14765 Polyketide synthase dehydratase CLFO_RS04835 PF08659 KR domain CLFO_RS04835 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04835 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04835 PF00668 Condensation domain CLFO_RS04835 PF13193 AMP-binding enzyme C-terminal domain CLFO_RS04835 PF00501 AMP-binding enzyme CLFO_RS04835 PF00550 Phosphopantetheine attachment site CLFO_RS04835 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04840 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS04840 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS04840 PF14765 Polyketide synthase dehydratase CLFO_RS04840 PF00550 Phosphopantetheine attachment site CLFO_RS04840 PF16197 Ketoacyl-synthetase C-terminal extension CLFO_RS04840 PF08242 Methyltransferase domain CLFO_RS04840 PF08659 KR domain CLFO_RS04855 PF00395 S-layer homology domain CLFO_RS04855 PF06452 Carbohydrate family 9 binding domain-like CLFO_RS04855 PF02018 Carbohydrate binding domain CLFO_RS04855 PF00331 Glycosyl hydrolase family 10 CLFO_RS04860 PF01906 Putative heavy-metal-binding CLFO_RS04865 PF04024 PspC domain CLFO_RS04890 PF00005 ABC transporter CLFO_RS04895 PF00005 ABC transporter CLFO_RS04900 PF02361 Cobalt transport protein CLFO_RS04915 PF00005 ABC transporter CLFO_RS04920 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS04925 PF12849 PBP superfamily domain CLFO_RS04935 PF01032 FecCD transport family CLFO_RS04940 PF00005 ABC transporter CLFO_RS04950 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLFO_RS04950 PF02742 Iron dependent repressor, metal binding and dimerisation domain CLFO_RS04960 PF07664 Ferrous iron transport protein B C terminus CLFO_RS04960 PF17910 FeoB cytosolic helical domain CLFO_RS04960 PF02421 Ferrous iron transport protein B CLFO_RS04960 PF07670 Nucleoside recognition CLFO_RS04965 PF00455 DeoR C terminal sensor domain CLFO_RS04965 PF08220 DeoR-like helix-turn-helix domain CLFO_RS04970 PF07005 Sugar-binding N-terminal domain CLFO_RS04970 PF17042 Nucleotide-binding C-terminal domain CLFO_RS04975 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLFO_RS04980 PF02447 GntP family permease CLFO_RS05000 PF02245 Methylpurine-DNA glycosylase (MPG) CLFO_RS05005 PF01553 Acyltransferase CLFO_RS05010 PF00795 Carbon-nitrogen hydrolase CLFO_RS05015 PF07486 Cell Wall Hydrolase CLFO_RS05020 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLFO_RS05020 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLFO_RS05025 PF00701 Dihydrodipicolinate synthetase family CLFO_RS05030 PF05173 Dihydrodipicolinate reductase, C-terminus CLFO_RS05030 PF01113 Dihydrodipicolinate reductase, N-terminus CLFO_RS05035 PF14602 Hexapeptide repeat of succinyl-transferase CLFO_RS05035 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CLFO_RS05035 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS05040 PF00696 Amino acid kinase family CLFO_RS05040 PF13840 ACT domain CLFO_RS05040 PF01842 ACT domain CLFO_RS05045 PF00202 Aminotransferase class-III CLFO_RS05055 PF02001 Protein of unknown function DUF134 CLFO_RS05060 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS05060 PF00155 Aminotransferase class I and II CLFO_RS05065 PF03063 Prismane/CO dehydrogenase family CLFO_RS05070 PF02743 Cache domain CLFO_RS05070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS05070 PF00672 HAMP domain CLFO_RS05075 PF07517 SecA DEAD-like domain CLFO_RS05075 PF01043 SecA preprotein cross-linking domain CLFO_RS05075 PF02810 SEC-C motif CLFO_RS05075 PF07516 SecA Wing and Scaffold domain CLFO_RS05085 PF02743 Cache domain CLFO_RS05085 PF00672 HAMP domain CLFO_RS05085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS05090 PF01966 HD domain CLFO_RS05095 PF00117 Glutamine amidotransferase class-I CLFO_RS05100 PF00425 chorismate binding enzyme CLFO_RS05100 PF04715 Anthranilate synthase component I, N terminal region CLFO_RS05105 PF01063 Amino-transferase class IV CLFO_RS05110 PF01227 GTP cyclohydrolase I CLFO_RS05115 PF00809 Pterin binding enzyme CLFO_RS05120 PF02152 Dihydroneopterin aldolase CLFO_RS05125 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLFO_RS05130 PF00793 DAHP synthetase I family CLFO_RS05130 PF18152 DAHP synthase ferredoxin-like domain CLFO_RS05145 PF03853 YjeF-related protein N-terminus CLFO_RS05145 PF01256 Carbohydrate kinase CLFO_RS05160 PF05067 Manganese containing catalase CLFO_RS05165 PF13367 PrsW family intramembrane metalloprotease CLFO_RS05180 PF10502 Signal peptidase, peptidase S26 CLFO_RS05185 PF00571 CBS domain CLFO_RS05190 PF00381 PTS HPr component phosphorylation site CLFO_RS05195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLFO_RS05195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS05195 PF02824 TGS domain CLFO_RS05195 PF03129 Anticodon binding domain CLFO_RS05205 PF00892 EamA-like transporter family CLFO_RS05210 PF10502 Signal peptidase, peptidase S26 CLFO_RS05215 PF08331 Domain of unknown function (DUF1730) CLFO_RS05220 PF13654 AAA domain CLFO_RS05220 PF05362 Lon protease (S16) C-terminal proteolytic domain CLFO_RS05225 PF00155 Aminotransferase class I and II CLFO_RS05230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLFO_RS05235 PF00873 AcrB/AcrD/AcrF family CLFO_RS05245 PF10576 Iron-sulfur binding domain of endonuclease III CLFO_RS05245 PF00730 HhH-GPD superfamily base excision DNA repair protein CLFO_RS05245 PF00633 Helix-hairpin-helix motif CLFO_RS05250 PF02491 SHS2 domain inserted in FTSA CLFO_RS05255 PF04294 VanW like protein CLFO_RS05265 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLFO_RS05265 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLFO_RS05275 PF00188 Cysteine-rich secretory protein family CLFO_RS05280 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CLFO_RS05285 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CLFO_RS05290 PF02654 Cobalamin-5-phosphate synthase CLFO_RS05295 PF00300 Histidine phosphatase superfamily (branch 1) CLFO_RS05300 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLFO_RS05300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLFO_RS05305 PF03186 CobD/Cbib protein CLFO_RS05310 PF00155 Aminotransferase class I and II CLFO_RS05325 PF12323 Helix-turn-helix domain CLFO_RS05325 PF01385 Probable transposase CLFO_RS05325 PF07282 Putative transposase DNA-binding domain CLFO_RS05345 PF02645 Uncharacterised protein, DegV family COG1307 CLFO_RS05350 PF01520 N-acetylmuramoyl-L-alanine amidase CLFO_RS05350 PF08239 Bacterial SH3 domain CLFO_RS05365 PF00156 Phosphoribosyl transferase domain CLFO_RS05370 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CLFO_RS05370 PF14602 Hexapeptide repeat of succinyl-transferase CLFO_RS05370 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS05375 PF07687 Peptidase dimerisation domain CLFO_RS05375 PF01546 Peptidase family M20/M25/M40 CLFO_RS05390 PF00313 'Cold-shock' DNA-binding domain CLFO_RS05395 PF01430 Hsp33 protein CLFO_RS05420 PF10369 Small subunit of acetolactate synthase CLFO_RS05425 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLFO_RS05425 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLFO_RS05430 PF00682 HMGL-like CLFO_RS05430 PF08502 LeuA allosteric (dimerisation) domain CLFO_RS05435 PF08502 LeuA allosteric (dimerisation) domain CLFO_RS05435 PF00682 HMGL-like CLFO_RS05440 PF00330 Aconitase family (aconitate hydratase) CLFO_RS05445 PF00694 Aconitase C-terminal domain CLFO_RS05450 PF00180 Isocitrate/isopropylmalate dehydrogenase CLFO_RS05455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS05455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLFO_RS05455 PF00205 Thiamine pyrophosphate enzyme, central domain CLFO_RS05460 PF03063 Prismane/CO dehydrogenase family CLFO_RS05465 PF02082 Transcriptional regulator CLFO_RS05480 PF04286 Protein of unknown function (DUF445) CLFO_RS05485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLFO_RS05485 PF02824 TGS domain CLFO_RS05485 PF03129 Anticodon binding domain CLFO_RS05485 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS05490 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS05490 PF01434 Peptidase family M41 CLFO_RS05490 PF17862 AAA+ lid domain CLFO_RS05495 PF05198 Translation initiation factor IF-3, N-terminal domain CLFO_RS05495 PF00707 Translation initiation factor IF-3, C-terminal domain CLFO_RS05500 PF01632 Ribosomal protein L35 CLFO_RS05505 PF00453 Ribosomal protein L20 CLFO_RS05510 PF02386 Cation transport protein CLFO_RS05515 PF02080 TrkA-C domain CLFO_RS05515 PF02254 TrkA-N domain CLFO_RS05520 PF00588 SpoU rRNA Methylase family CLFO_RS05520 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLFO_RS05525 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLFO_RS05525 PF01409 tRNA synthetases class II core domain (F) CLFO_RS05530 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLFO_RS05530 PF01588 Putative tRNA binding domain CLFO_RS05530 PF03483 B3/4 domain CLFO_RS05530 PF03147 Ferredoxin-fold anticodon binding domain CLFO_RS05530 PF03484 tRNA synthetase B5 domain CLFO_RS05535 PF05164 Cell division protein ZapA CLFO_RS05540 PF01136 Peptidase family U32 CLFO_RS05540 PF16325 Peptidase family U32 C-terminal domain CLFO_RS05545 PF01479 S4 domain CLFO_RS05545 PF00579 tRNA synthetases class I (W and Y) CLFO_RS05550 PF01966 HD domain CLFO_RS05555 PF00933 Glycosyl hydrolase family 3 N terminal domain CLFO_RS05555 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLFO_RS05560 PF00860 Permease family CLFO_RS05565 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLFO_RS05565 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLFO_RS05565 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLFO_RS05565 PF10371 Domain of unknown function CLFO_RS05565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS05580 PF08367 Peptidase M16C associated CLFO_RS05580 PF00675 Insulinase (Peptidase family M16) CLFO_RS05580 PF05193 Peptidase M16 inactive domain CLFO_RS05585 PF03063 Prismane/CO dehydrogenase family CLFO_RS05590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLFO_RS05595 PF01268 Formate--tetrahydrofolate ligase CLFO_RS05600 PF04961 Formiminotransferase-cyclodeaminase CLFO_RS05605 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLFO_RS05605 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLFO_RS05620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLFO_RS05620 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS05630 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit CLFO_RS05635 PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit CLFO_RS05635 PF04060 Putative Fe-S cluster CLFO_RS05640 PF02607 B12 binding domain CLFO_RS05640 PF02574 Homocysteine S-methyltransferase CLFO_RS05640 PF00809 Pterin binding enzyme CLFO_RS05640 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLFO_RS05640 PF02310 B12 binding domain CLFO_RS05645 PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CLFO_RS05645 PF18537 Carbon monoxide dehydrogenase subunit alpha N-terminal domain CLFO_RS05650 PF01597 Glycine cleavage H-protein CLFO_RS05655 PF00175 Oxidoreductase NAD-binding domain CLFO_RS05655 PF00111 2Fe-2S iron-sulfur cluster binding domain CLFO_RS05655 PF00970 Oxidoreductase FAD-binding domain CLFO_RS05695 PF03099 Biotin/lipoate A/B protein ligase family CLFO_RS05700 PF04055 Radical SAM superfamily CLFO_RS05710 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLFO_RS05710 PF00056 lactate/malate dehydrogenase, NAD binding domain CLFO_RS05715 PF01467 Cytidylyltransferase-like CLFO_RS05720 PF01476 LysM domain CLFO_RS05720 PF03734 L,D-transpeptidase catalytic domain CLFO_RS05755 PF01867 CRISPR associated protein Cas1 CLFO_RS05760 PF09827 CRISPR associated protein Cas2 CLFO_RS05765 PF01713 Smr domain CLFO_RS05765 PF00488 MutS domain V CLFO_RS05770 PF04463 Protein of unknown function (DUF523) CLFO_RS05775 PF00360 Phytochrome region CLFO_RS05775 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS05775 PF08446 PAS fold CLFO_RS05775 PF01590 GAF domain CLFO_RS05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS05780 PF00072 Response regulator receiver domain CLFO_RS05780 PF00672 HAMP domain CLFO_RS05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS05780 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS05780 PF01627 Hpt domain CLFO_RS05780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLFO_RS05785 PF00072 Response regulator receiver domain CLFO_RS05785 PF12833 Helix-turn-helix domain CLFO_RS05795 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS05805 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLFO_RS05805 PF00005 ABC transporter CLFO_RS05810 PF00005 ABC transporter CLFO_RS05815 PF00547 Urease, gamma subunit CLFO_RS05820 PF00699 Urease beta subunit CLFO_RS05825 PF00449 Urease alpha-subunit, N-terminal domain CLFO_RS05825 PF01979 Amidohydrolase family CLFO_RS05830 PF00750 tRNA synthetases class I (R) CLFO_RS05830 PF03485 Arginyl tRNA synthetase N terminal domain CLFO_RS05830 PF05746 DALR anticodon binding domain CLFO_RS05850 PF04055 Radical SAM superfamily CLFO_RS05850 PF02310 B12 binding domain CLFO_RS05865 PF00994 Probable molybdopterin binding domain CLFO_RS05865 PF02464 Competence-damaged protein CLFO_RS05870 PF00111 2Fe-2S iron-sulfur cluster binding domain CLFO_RS05870 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLFO_RS05870 PF01799 [2Fe-2S] binding domain CLFO_RS05870 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLFO_RS05875 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLFO_RS05875 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS05895 PF13186 Iron-sulfur cluster-binding domain CLFO_RS05895 PF04055 Radical SAM superfamily CLFO_RS05900 PF14535 AMP-binding enzyme C-terminal domain CLFO_RS05900 PF00501 AMP-binding enzyme CLFO_RS05905 PF13478 XdhC Rossmann domain CLFO_RS05905 PF02625 XdhC and CoxI family CLFO_RS05910 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS05910 PF12804 MobA-like NTP transferase domain CLFO_RS05915 PF00300 Histidine phosphatase superfamily (branch 1) CLFO_RS05920 PF13426 PAS domain CLFO_RS05920 PF00158 Sigma-54 interaction domain CLFO_RS05920 PF02954 Bacterial regulatory protein, Fis family CLFO_RS05925 PF01515 Phosphate acetyl/butaryl transferase CLFO_RS06030 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLFO_RS06075 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS06075 PF00072 Response regulator receiver domain CLFO_RS06080 PF00989 PAS fold CLFO_RS06080 PF16736 Single Cache-like CLFO_RS06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS06080 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS06100 PF08241 Methyltransferase domain CLFO_RS06270 PF01212 Beta-eliminating lyase CLFO_RS06290 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLFO_RS06295 PF02625 XdhC and CoxI family CLFO_RS06295 PF13478 XdhC Rossmann domain CLFO_RS06300 PF00994 Probable molybdopterin binding domain CLFO_RS06300 PF02464 Competence-damaged protein CLFO_RS06300 PF18146 Damage-inducible protein CinA KH domain CLFO_RS06310 PF00111 2Fe-2S iron-sulfur cluster binding domain CLFO_RS06310 PF01799 [2Fe-2S] binding domain CLFO_RS06315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLFO_RS06315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLFO_RS06315 PF01799 [2Fe-2S] binding domain CLFO_RS06320 PF00860 Permease family CLFO_RS06330 PF10990 Protein of unknown function (DUF2809) CLFO_RS06340 PF03772 Competence protein CLFO_RS06340 PF00753 Metallo-beta-lactamase superfamily CLFO_RS06340 PF13567 Domain of unknown function (DUF4131) CLFO_RS06360 PF01047 MarR family CLFO_RS06360 PF00583 Acetyltransferase (GNAT) family CLFO_RS06370 PF02743 Cache domain CLFO_RS06370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS06370 PF00672 HAMP domain CLFO_RS06375 PF12849 PBP superfamily domain CLFO_RS06395 PF16868 NMT1-like family CLFO_RS06400 PF07286 Protein of unknown function (DUF1445) CLFO_RS06410 PF03746 LamB/YcsF family CLFO_RS06415 PF02682 Carboxyltransferase domain, subdomain C and D CLFO_RS06420 PF02626 Carboxyltransferase domain, subdomain A and B CLFO_RS06425 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS06425 PF18719 ArlS sensor domain CLFO_RS06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS06430 PF00072 Response regulator receiver domain CLFO_RS06430 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS06450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLFO_RS06450 PF03466 LysR substrate binding domain CLFO_RS06455 PF00390 Malic enzyme, N-terminal domain CLFO_RS06455 PF03949 Malic enzyme, NAD binding domain CLFO_RS06460 PF00158 Sigma-54 interaction domain CLFO_RS06460 PF13426 PAS domain CLFO_RS06460 PF02954 Bacterial regulatory protein, Fis family CLFO_RS06475 PF03313 Serine dehydratase alpha chain CLFO_RS06480 PF01042 Endoribonuclease L-PSP CLFO_RS06490 PF00899 ThiF family CLFO_RS06500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLFO_RS06500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLFO_RS06505 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS06515 PF00939 Sodium:sulfate symporter transmembrane region CLFO_RS06525 PF00890 FAD binding domain CLFO_RS06535 PF01507 Phosphoadenosine phosphosulfate reductase family CLFO_RS06540 PF00009 Elongation factor Tu GTP binding domain CLFO_RS06545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLFO_RS06550 PF00873 AcrB/AcrD/AcrF family CLFO_RS06555 PF12833 Helix-turn-helix domain CLFO_RS06560 PF00561 alpha/beta hydrolase fold CLFO_RS06565 PF12833 Helix-turn-helix domain CLFO_RS06565 PF07883 Cupin domain CLFO_RS06570 PF04072 Leucine carboxyl methyltransferase CLFO_RS06580 PF06968 Biotin and Thiamin Synthesis associated domain CLFO_RS06580 PF04055 Radical SAM superfamily CLFO_RS06590 PF03744 6-carboxyhexanoate--CoA ligase CLFO_RS06595 PF00155 Aminotransferase class I and II CLFO_RS06605 PF00202 Aminotransferase class-III CLFO_RS06615 PF00206 Lyase CLFO_RS06615 PF14698 Argininosuccinate lyase C-terminal CLFO_RS06620 PF07702 UTRA domain CLFO_RS06620 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS06640 PF04055 Radical SAM superfamily CLFO_RS06640 PF06968 Biotin and Thiamin Synthesis associated domain CLFO_RS06670 PF01145 SPFH domain / Band 7 family CLFO_RS06675 PF01145 SPFH domain / Band 7 family CLFO_RS06690 PF09587 Bacterial capsule synthesis protein PGA_cap CLFO_RS06695 PF00578 AhpC/TSA family CLFO_RS06700 PF00578 AhpC/TSA family CLFO_RS06700 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLFO_RS06705 PF00672 HAMP domain CLFO_RS06705 PF02743 Cache domain CLFO_RS06705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS06710 PF02142 MGS-like domain CLFO_RS06710 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLFO_RS06710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLFO_RS06720 PF00293 NUDIX domain CLFO_RS06730 PF00356 Bacterial regulatory proteins, lacI family CLFO_RS06735 PF00294 pfkB family carbohydrate kinase CLFO_RS06740 PF02608 ABC transporter substrate-binding protein PnrA-like CLFO_RS06745 PF00005 ABC transporter CLFO_RS06750 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS06755 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS06760 PF07687 Peptidase dimerisation domain CLFO_RS06760 PF01546 Peptidase family M20/M25/M40 CLFO_RS06770 PF01546 Peptidase family M20/M25/M40 CLFO_RS06770 PF07687 Peptidase dimerisation domain CLFO_RS06780 PF04237 YjbR CLFO_RS06800 PF00586 AIR synthase related protein, N-terminal domain CLFO_RS06800 PF02769 AIR synthase related protein, C-terminal domain CLFO_RS06800 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLFO_RS06805 PF08220 DeoR-like helix-turn-helix domain CLFO_RS06805 PF00455 DeoR C terminal sensor domain CLFO_RS06810 PF00294 pfkB family carbohydrate kinase CLFO_RS06815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLFO_RS06815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLFO_RS06820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLFO_RS06820 PF02378 Phosphotransferase system, EIIC CLFO_RS06825 PF00381 PTS HPr component phosphorylation site CLFO_RS06830 PF00391 PEP-utilising enzyme, mobile domain CLFO_RS06830 PF05524 PEP-utilising enzyme, N-terminal CLFO_RS06830 PF02896 PEP-utilising enzyme, TIM barrel domain CLFO_RS06835 PF00072 Response regulator receiver domain CLFO_RS06835 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS06840 PF00672 HAMP domain CLFO_RS06840 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS06855 PF13407 Periplasmic binding protein domain CLFO_RS06860 PF00563 EAL domain CLFO_RS06860 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS06860 PF03707 Bacterial signalling protein N terminal repeat CLFO_RS06865 PF01645 Conserved region in glutamate synthase CLFO_RS06865 PF01493 GXGXG motif CLFO_RS06865 PF04898 Glutamate synthase central domain CLFO_RS06865 PF00310 Glutamine amidotransferases class-II CLFO_RS06870 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS06870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLFO_RS06875 PF00072 Response regulator receiver domain CLFO_RS06875 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS06880 PF00989 PAS fold CLFO_RS06880 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS06880 PF18698 Histidine kinase sensor domain CLFO_RS06880 PF00672 HAMP domain CLFO_RS06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS06895 PF00005 ABC transporter CLFO_RS06910 PF13690 Chemotaxis phosphatase CheX CLFO_RS06915 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS06915 PF03707 Bacterial signalling protein N terminal repeat CLFO_RS06915 PF00563 EAL domain CLFO_RS06920 PF00570 HRDC domain CLFO_RS06920 PF00271 Helicase conserved C-terminal domain CLFO_RS06920 PF09382 RQC domain CLFO_RS06920 PF16124 RecQ zinc-binding CLFO_RS06920 PF00270 DEAD/DEAH box helicase CLFO_RS06930 PF02540 NAD synthase CLFO_RS06955 PF12727 PBP superfamily domain CLFO_RS06955 PF12728 Helix-turn-helix domain CLFO_RS06965 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS06970 PF12857 TOBE-like domain CLFO_RS06970 PF00005 ABC transporter CLFO_RS06970 PF17850 CysA C-terminal regulatory domain CLFO_RS06975 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLFO_RS06980 PF00543 Nitrogen regulatory protein P-II CLFO_RS06985 PF00543 Nitrogen regulatory protein P-II CLFO_RS06990 PF00148 Nitrogenase component 1 type Oxidoreductase CLFO_RS06995 PF00148 Nitrogenase component 1 type Oxidoreductase CLFO_RS07000 PF00148 Nitrogenase component 1 type Oxidoreductase CLFO_RS07005 PF00148 Nitrogenase component 1 type Oxidoreductase CLFO_RS07010 PF04055 Radical SAM superfamily CLFO_RS07010 PF02579 Dinitrogenase iron-molybdenum cofactor CLFO_RS07020 PF17200 Single Cache domain 2 CLFO_RS07020 PF00672 HAMP domain CLFO_RS07020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS07035 PF00313 'Cold-shock' DNA-binding domain CLFO_RS07040 PF03006 Haemolysin-III related CLFO_RS07050 PF00884 Sulfatase CLFO_RS07060 PF00375 Sodium:dicarboxylate symporter family CLFO_RS07065 PF01513 ATP-NAD kinase CLFO_RS07070 PF00849 RNA pseudouridylate synthase CLFO_RS07085 PF00395 S-layer homology domain CLFO_RS07085 PF00963 Cohesin domain CLFO_RS07090 PF02018 Carbohydrate binding domain CLFO_RS07090 PF00331 Glycosyl hydrolase family 10 CLFO_RS07090 PF00395 S-layer homology domain CLFO_RS07090 PF06452 Carbohydrate family 9 binding domain-like CLFO_RS07115 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS07115 PF01434 Peptidase family M41 CLFO_RS07115 PF17862 AAA+ lid domain CLFO_RS07130 PF03453 MoeA N-terminal region (domain I and II) CLFO_RS07130 PF00994 Probable molybdopterin binding domain CLFO_RS07130 PF03454 MoeA C-terminal region (domain IV) CLFO_RS07135 PF03453 MoeA N-terminal region (domain I and II) CLFO_RS07135 PF03454 MoeA C-terminal region (domain IV) CLFO_RS07135 PF00994 Probable molybdopterin binding domain CLFO_RS07145 PF14791 DNA polymerase beta thumb CLFO_RS07145 PF14716 Helix-hairpin-helix domain CLFO_RS07145 PF02811 PHP domain CLFO_RS07150 PF01943 Polysaccharide biosynthesis protein CLFO_RS07150 PF14667 Polysaccharide biosynthesis C-terminal domain CLFO_RS07155 PF08448 PAS fold CLFO_RS07155 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS07180 PF00005 ABC transporter CLFO_RS07180 PF00664 ABC transporter transmembrane region CLFO_RS07185 PF00664 ABC transporter transmembrane region CLFO_RS07185 PF00005 ABC transporter CLFO_RS07195 PF00155 Aminotransferase class I and II CLFO_RS07200 PF00781 Diacylglycerol kinase catalytic domain CLFO_RS07205 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS07215 PF00221 Aromatic amino acid lyase CLFO_RS07230 PF05979 Bacterial protein of unknown function (DUF896) CLFO_RS07240 PF07730 Histidine kinase CLFO_RS07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS07240 PF05384 Sensor protein DegS CLFO_RS07245 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS07245 PF00072 Response regulator receiver domain CLFO_RS07250 PF02645 Uncharacterised protein, DegV family COG1307 CLFO_RS07255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLFO_RS07255 PF03466 LysR substrate binding domain CLFO_RS07260 PF16916 Dimerisation domain of Zinc Transporter CLFO_RS07260 PF01545 Cation efflux family CLFO_RS07300 PF18277 AbrB C-terminal domain CLFO_RS07300 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLFO_RS07335 PF04545 Sigma-70, region 4 CLFO_RS07335 PF04542 Sigma-70 region 2 CLFO_RS07385 PF00574 Clp protease CLFO_RS07455 PF04865 Baseplate J-like protein CLFO_RS07485 PF10960 BhlA holin family CLFO_RS07490 PF01520 N-acetylmuramoyl-L-alanine amidase CLFO_RS07545 PF08281 Sigma-70, region 4 CLFO_RS07545 PF04542 Sigma-70 region 2 CLFO_RS07560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLFO_RS07560 PF01367 5'-3' exonuclease, C-terminal SAM fold CLFO_RS07560 PF00476 DNA polymerase family A CLFO_RS07565 PF01121 Dephospho-CoA kinase CLFO_RS07570 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CLFO_RS07570 PF01464 Transglycosylase SLT domain CLFO_RS07575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS07590 PF01695 IstB-like ATP binding protein CLFO_RS07600 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS07605 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS07620 PF01894 Uncharacterised protein family UPF0047 CLFO_RS07685 PF00589 Phage integrase family CLFO_RS07685 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS07740 PF13302 Acetyltransferase (GNAT) domain CLFO_RS07770 PF13007 Transposase C of IS166 homeodomain CLFO_RS07770 PF13817 IS66 C-terminal element CLFO_RS07770 PF03050 Transposase IS66 family CLFO_RS07770 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS07780 PF06733 DEAD_2 CLFO_RS07780 PF13307 Helicase C-terminal domain CLFO_RS07800 PF01758 Sodium Bile acid symporter family CLFO_RS07815 PF07556 Protein of unknown function (DUF1538) CLFO_RS07820 PF00501 AMP-binding enzyme CLFO_RS07820 PF01553 Acyltransferase CLFO_RS07830 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLFO_RS07900 PF17763 Glutaminase/Asparaginase C-terminal domain CLFO_RS07900 PF00710 Asparaginase, N-terminal CLFO_RS07910 PF00266 Aminotransferase class-V CLFO_RS07915 PF02568 Thiamine biosynthesis protein (ThiI) CLFO_RS07915 PF02926 THUMP domain CLFO_RS07920 PF01967 MoaC family CLFO_RS07925 PF00994 Probable molybdopterin binding domain CLFO_RS07930 PF04055 Radical SAM superfamily CLFO_RS07935 PF02901 Pyruvate formate lyase-like CLFO_RS07935 PF01228 Glycine radical CLFO_RS07940 PF01740 STAS domain CLFO_RS07945 PF13581 Histidine kinase-like ATPase domain CLFO_RS07950 PF04542 Sigma-70 region 2 CLFO_RS07950 PF04545 Sigma-70, region 4 CLFO_RS07950 PF04539 Sigma-70 region 3 CLFO_RS07955 PF12164 Stage V sporulation protein AA CLFO_RS07960 PF13782 Stage V sporulation protein AB CLFO_RS07965 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLFO_RS07970 PF07451 Stage V sporulation protein AD (SpoVAD) CLFO_RS07975 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLFO_RS07980 PF14097 Stage V sporulation protein AE1 CLFO_RS07985 PF00912 Transglycosylase CLFO_RS07985 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS07995 PF00239 Resolvase, N terminal domain CLFO_RS07995 PF02796 Helix-turn-helix domain of resolvase CLFO_RS08010 PF13007 Transposase C of IS166 homeodomain CLFO_RS08010 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS08010 PF03050 Transposase IS66 family CLFO_RS08010 PF13817 IS66 C-terminal element CLFO_RS08060 PF01381 Helix-turn-helix CLFO_RS08105 PF00589 Phage integrase family CLFO_RS08140 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLFO_RS08235 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLFO_RS08250 PF12833 Helix-turn-helix domain CLFO_RS08255 PF01926 50S ribosome-binding GTPase CLFO_RS08255 PF13167 GTP-binding GTPase N-terminal CLFO_RS08255 PF16360 GTP-binding GTPase Middle Region CLFO_RS08265 PF09186 Domain of unknown function (DUF1949) CLFO_RS08265 PF01205 Uncharacterized protein family UPF0029 CLFO_RS08280 PF01925 Sulfite exporter TauE/SafE CLFO_RS08285 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS08290 PF02540 NAD synthase CLFO_RS08295 PF01709 Transcriptional regulator CLFO_RS08300 PF04073 Aminoacyl-tRNA editing domain CLFO_RS08305 PF00704 Glycosyl hydrolases family 18 CLFO_RS08315 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS08320 PF13520 Amino acid permease CLFO_RS08325 PF00202 Aminotransferase class-III CLFO_RS08330 PF13556 PucR C-terminal helix-turn-helix domain CLFO_RS08330 PF17853 GGDEF-like domain CLFO_RS08350 PF03063 Prismane/CO dehydrogenase family CLFO_RS08360 PF04324 BFD-like [2Fe-2S] binding domain CLFO_RS08360 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLFO_RS08360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLFO_RS08360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS08365 PF02664 S-Ribosylhomocysteinase (LuxS) CLFO_RS08370 PF00877 NlpC/P60 family CLFO_RS08375 PF01464 Transglycosylase SLT domain CLFO_RS08405 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS08405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS08410 PF10531 SLBB domain CLFO_RS08410 PF13237 4Fe-4S dicluster domain CLFO_RS08410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS08410 PF13375 RnfC Barrel sandwich hybrid domain CLFO_RS08415 PF03116 NQR2, RnfD, RnfE family CLFO_RS08420 PF04205 FMN-binding domain CLFO_RS08425 PF02508 Rnf-Nqr subunit, membrane protein CLFO_RS08430 PF02508 Rnf-Nqr subunit, membrane protein CLFO_RS08435 PF04060 Putative Fe-S cluster CLFO_RS08435 PF13187 4Fe-4S dicluster domain CLFO_RS08435 PF00037 4Fe-4S binding domain CLFO_RS08450 PF02545 Maf-like protein CLFO_RS08455 PF04002 RadC-like JAB domain CLFO_RS08475 PF03717 Penicillin-binding Protein dimerisation domain CLFO_RS08475 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS08480 PF03775 Septum formation inhibitor MinC, C-terminal domain CLFO_RS08485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLFO_RS08490 PF03776 Septum formation topological specificity factor MinE CLFO_RS08495 PF02142 MGS-like domain CLFO_RS08505 PF02163 Peptidase family M50 CLFO_RS08520 PF10150 Ribonuclease E/G family CLFO_RS08520 PF00575 S1 RNA binding domain CLFO_RS08525 PF00829 Ribosomal prokaryotic L21 protein CLFO_RS08535 PF01016 Ribosomal L27 protein CLFO_RS08540 PF09269 Domain of unknown function (DUF1967) CLFO_RS08540 PF01018 GTP1/OBG CLFO_RS08540 PF01926 50S ribosome-binding GTPase CLFO_RS08555 PF03060 Nitronate monooxygenase CLFO_RS08560 PF01467 Cytidylyltransferase-like CLFO_RS08565 PF01966 HD domain CLFO_RS08570 PF03816 Cell envelope-related transcriptional attenuator domain CLFO_RS08575 PF01699 Sodium/calcium exchanger protein CLFO_RS08585 PF13603 Leucyl-tRNA synthetase, Domain 2 CLFO_RS08585 PF08264 Anticodon-binding domain of tRNA CLFO_RS08585 PF09334 tRNA synthetases class I (M) CLFO_RS08585 PF00133 tRNA synthetases class I (I, L, M and V) CLFO_RS08595 PF01042 Endoribonuclease L-PSP CLFO_RS08600 PF01842 ACT domain CLFO_RS08600 PF03315 Serine dehydratase beta chain CLFO_RS08605 PF03313 Serine dehydratase alpha chain CLFO_RS08610 PF07943 Penicillin-binding protein 5, C-terminal domain CLFO_RS08610 PF00768 D-alanyl-D-alanine carboxypeptidase CLFO_RS08625 PF01235 Sodium:alanine symporter family CLFO_RS08630 PF03841 L-seryl-tRNA selenium transferase CLFO_RS08630 PF12390 Selenocysteine synthase N terminal CLFO_RS08635 PF09106 Elongation factor SelB, winged helix CLFO_RS08635 PF09107 Elongation factor SelB, winged helix CLFO_RS08635 PF09105 Elongation factor SelB, winged helix CLFO_RS08635 PF03144 Elongation factor Tu domain 2 CLFO_RS08635 PF00009 Elongation factor Tu GTP binding domain CLFO_RS08645 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS08645 PF00589 Phage integrase family CLFO_RS08715 PF01695 IstB-like ATP binding protein CLFO_RS08755 PF01844 HNH endonuclease CLFO_RS08770 PF03354 Phage Terminase CLFO_RS08865 PF10960 BhlA holin family CLFO_RS08880 PF01327 Polypeptide deformylase CLFO_RS08895 PF04070 Domain of unknown function (DUF378) CLFO_RS08905 PF02075 Crossover junction endodeoxyribonuclease RuvC CLFO_RS08910 PF07499 RuvA, C-terminal domain CLFO_RS08910 PF01330 RuvA N terminal domain CLFO_RS08915 PF17864 RuvB AAA lid domain CLFO_RS08915 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLFO_RS08915 PF05491 RuvB C-terminal winged helix domain CLFO_RS08920 PF11146 Protein of unknown function (DUF2905) CLFO_RS08925 PF04122 Putative cell wall binding repeat 2 CLFO_RS08925 PF08486 Stage II sporulation protein CLFO_RS08930 PF02547 Queuosine biosynthesis protein CLFO_RS08935 PF01702 Queuine tRNA-ribosyltransferase CLFO_RS08940 PF02699 Preprotein translocase subunit CLFO_RS08955 PF04055 Radical SAM superfamily CLFO_RS08960 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS08965 PF07549 SecD/SecF GG Motif CLFO_RS08965 PF02355 Protein export membrane protein CLFO_RS08970 PF02355 Protein export membrane protein CLFO_RS08970 PF07549 SecD/SecF GG Motif CLFO_RS08975 PF03109 ABC1 family CLFO_RS08980 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLFO_RS08980 PF17768 RecJ OB domain CLFO_RS08980 PF02272 DHHA1 domain CLFO_RS08980 PF01368 DHH family CLFO_RS08985 PF00156 Phosphoribosyl transferase domain CLFO_RS08990 PF04607 Region found in RelA / SpoT proteins CLFO_RS08990 PF02824 TGS domain CLFO_RS08990 PF13291 ACT domain CLFO_RS08995 PF02580 D-Tyr-tRNA(Tyr) deacylase CLFO_RS09000 PF00753 Metallo-beta-lactamase superfamily CLFO_RS09005 PF04055 Radical SAM superfamily CLFO_RS09010 PF00152 tRNA synthetases class II (D, K and N) CLFO_RS09010 PF01336 OB-fold nucleic acid binding domain CLFO_RS09010 PF02938 GAD domain CLFO_RS09015 PF00395 S-layer homology domain CLFO_RS09015 PF00963 Cohesin domain CLFO_RS09025 PF00899 ThiF family CLFO_RS09045 PF00464 Serine hydroxymethyltransferase CLFO_RS09050 PF13426 PAS domain CLFO_RS09050 PF02954 Bacterial regulatory protein, Fis family CLFO_RS09050 PF00158 Sigma-54 interaction domain CLFO_RS09070 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS09075 PF16552 D-ornithine 4,5-aminomutase alpha-subunit CLFO_RS09080 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit CLFO_RS09080 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase CLFO_RS09080 PF02310 B12 binding domain CLFO_RS09085 PF13941 MutL protein CLFO_RS09090 PF01168 Alanine racemase, N-terminal domain CLFO_RS09120 PF12002 MgsA AAA+ ATPase C terminal CLFO_RS09120 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLFO_RS09120 PF16193 AAA C-terminal domain CLFO_RS09145 PF00188 Cysteine-rich secretory protein family CLFO_RS09160 PF04321 RmlD substrate binding domain CLFO_RS09165 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLFO_RS09165 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLFO_RS09165 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLFO_RS09185 PF00483 Nucleotidyl transferase CLFO_RS09190 PF16363 GDP-mannose 4,6 dehydratase CLFO_RS09195 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLFO_RS09240 PF02082 Transcriptional regulator CLFO_RS09245 PF00266 Aminotransferase class-V CLFO_RS09250 PF01592 NifU-like N terminal domain CLFO_RS09265 PF01594 AI-2E family transporter CLFO_RS09270 PF01411 tRNA synthetases class II (A) CLFO_RS09270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS09270 PF02272 DHHA1 domain CLFO_RS09275 PF06135 IreB regulatory phosphoprotein CLFO_RS09285 PF00248 Aldo/keto reductase family CLFO_RS09290 PF03652 Holliday junction resolvase CLFO_RS09295 PF06949 Protein of unknown function (DUF1292) CLFO_RS09305 PF17746 SfsA N-terminal OB domain CLFO_RS09305 PF03749 Sugar fermentation stimulation protein RE domain CLFO_RS09310 PF01475 Ferric uptake regulator family CLFO_RS09315 PF17770 Ribonuclease J C-terminal domain CLFO_RS09315 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLFO_RS09315 PF00753 Metallo-beta-lactamase superfamily CLFO_RS09330 PF06133 Control of competence regulator ComK, YlbF/YmcA CLFO_RS09340 PF07690 Major Facilitator Superfamily CLFO_RS09345 PF05257 CHAP domain CLFO_RS09345 PF01476 LysM domain CLFO_RS09355 PF01348 Type II intron maturase CLFO_RS09355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS09385 PF13411 MerR HTH family regulatory protein CLFO_RS09385 PF06445 GyrI-like small molecule binding domain CLFO_RS09395 PF01625 Peptide methionine sulfoxide reductase CLFO_RS09430 PF12833 Helix-turn-helix domain CLFO_RS09440 PF01625 Peptide methionine sulfoxide reductase CLFO_RS09445 PF16736 Single Cache-like CLFO_RS09445 PF00989 PAS fold CLFO_RS09445 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS09445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS09460 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS09460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS09460 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLFO_RS09465 PF00072 Response regulator receiver domain CLFO_RS09465 PF02954 Bacterial regulatory protein, Fis family CLFO_RS09465 PF00158 Sigma-54 interaction domain CLFO_RS09470 PF00072 Response regulator receiver domain CLFO_RS09470 PF00158 Sigma-54 interaction domain CLFO_RS09470 PF02954 Bacterial regulatory protein, Fis family CLFO_RS09475 PF08447 PAS fold CLFO_RS09475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS09475 PF00989 PAS fold CLFO_RS09475 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS09480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS09485 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS09490 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS09490 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS09495 PF00005 ABC transporter CLFO_RS09500 PF00005 ABC transporter CLFO_RS09505 PF02743 Cache domain CLFO_RS09505 PF06580 Histidine kinase CLFO_RS09505 PF00672 HAMP domain CLFO_RS09505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS09510 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS09510 PF00072 Response regulator receiver domain CLFO_RS09515 PF01596 O-methyltransferase CLFO_RS09520 PF16325 Peptidase family U32 C-terminal domain CLFO_RS09520 PF01136 Peptidase family U32 CLFO_RS09525 PF03717 Penicillin-binding Protein dimerisation domain CLFO_RS09525 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS09530 PF04545 Sigma-70, region 4 CLFO_RS09530 PF04542 Sigma-70 region 2 CLFO_RS09545 PF01488 Shikimate / quinate 5-dehydrogenase CLFO_RS09545 PF08501 Shikimate dehydrogenase substrate binding domain CLFO_RS09545 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLFO_RS09550 PF00437 Type II/IV secretion system protein CLFO_RS09550 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLFO_RS09555 PF00437 Type II/IV secretion system protein CLFO_RS09560 PF00482 Type II secretion system (T2SS), protein F CLFO_RS09565 PF07963 Prokaryotic N-terminal methylation motif CLFO_RS09585 PF06750 Bacterial Peptidase A24 N-terminal domain CLFO_RS09585 PF01478 Type IV leader peptidase family CLFO_RS09635 PF01220 Dehydroquinase class II CLFO_RS09640 PF00557 Metallopeptidase family M24 CLFO_RS09640 PF01321 Creatinase/Prolidase N-terminal domain CLFO_RS09645 PF09285 Elongation factor P, C-terminal CLFO_RS09645 PF01132 Elongation factor P (EF-P) OB domain CLFO_RS09645 PF08207 Elongation factor P (EF-P) KOW-like domain CLFO_RS09665 PF06686 Stage III sporulation protein AC/AD protein family CLFO_RS09670 PF06686 Stage III sporulation protein AC/AD protein family CLFO_RS09675 PF09546 Stage III sporulation protein AE (spore_III_AE) CLFO_RS09695 PF03780 Asp23 family, cell envelope-related function CLFO_RS09700 PF01029 NusB family CLFO_RS09705 PF00814 Glycoprotease family CLFO_RS09710 PF13742 OB-fold nucleic acid binding domain CLFO_RS09710 PF02601 Exonuclease VII, large subunit CLFO_RS09715 PF02609 Exonuclease VII small subunit CLFO_RS09720 PF00348 Polyprenyl synthetase CLFO_RS09725 PF02681 Divergent PAP2 family CLFO_RS09740 PF02779 Transketolase, pyrimidine binding domain CLFO_RS09740 PF02780 Transketolase, C-terminal domain CLFO_RS09740 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLFO_RS09745 PF01479 S4 domain CLFO_RS09745 PF01728 FtsJ-like methyltransferase CLFO_RS09750 PF02863 Arginine repressor, C-terminal domain CLFO_RS09750 PF01316 Arginine repressor, DNA binding domain CLFO_RS09755 PF13476 AAA domain CLFO_RS09760 PF17820 PDZ domain CLFO_RS09760 PF05580 SpoIVB peptidase S55 CLFO_RS09765 PF00072 Response regulator receiver domain CLFO_RS09765 PF08769 Sporulation initiation factor Spo0A C terminal CLFO_RS09780 PF02631 RecX family CLFO_RS09795 PF00535 Glycosyl transferase family 2 CLFO_RS09810 PF00293 NUDIX domain CLFO_RS09815 PF01944 Stage II sporulation protein M CLFO_RS09820 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS09820 PF00589 Phage integrase family CLFO_RS09825 PF01676 Metalloenzyme superfamily CLFO_RS09830 PF01048 Phosphorylase superfamily CLFO_RS09835 PF01048 Phosphorylase superfamily CLFO_RS09840 PF00591 Glycosyl transferase family, a/b domain CLFO_RS09840 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CLFO_RS09840 PF02885 Glycosyl transferase family, helical bundle domain CLFO_RS09845 PF00768 D-alanyl-D-alanine carboxypeptidase CLFO_RS09845 PF07943 Penicillin-binding protein 5, C-terminal domain CLFO_RS09850 PF12627 Probable RNA and SrmB- binding site of polymerase A CLFO_RS09850 PF01743 Poly A polymerase head domain CLFO_RS09850 PF02272 DHHA1 domain CLFO_RS09850 PF00571 CBS domain CLFO_RS09850 PF01368 DHH family CLFO_RS09855 PF02163 Peptidase family M50 CLFO_RS09860 PF02616 Segregation and condensation protein ScpA CLFO_RS09865 PF04079 Segregation and condensation complex subunit ScpB CLFO_RS09870 PF02675 S-adenosylmethionine decarboxylase CLFO_RS09880 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CLFO_RS09890 PF07943 Penicillin-binding protein 5, C-terminal domain CLFO_RS09890 PF00768 D-alanyl-D-alanine carboxypeptidase CLFO_RS09900 PF01134 Glucose inhibited division protein A CLFO_RS09900 PF13932 GidA associated domain CLFO_RS09910 PF13533 Biotin-lipoyl like CLFO_RS09915 PF00873 AcrB/AcrD/AcrF family CLFO_RS09920 PF03851 UV-endonuclease UvdE CLFO_RS09925 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLFO_RS09925 PF00072 Response regulator receiver domain CLFO_RS09925 PF01627 Hpt domain CLFO_RS09925 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS09925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS09930 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS09930 PF00072 Response regulator receiver domain CLFO_RS09935 PF02954 Bacterial regulatory protein, Fis family CLFO_RS09935 PF01590 GAF domain CLFO_RS09935 PF00158 Sigma-54 interaction domain CLFO_RS09950 PF00521 DNA gyrase/topoisomerase IV, subunit A CLFO_RS09950 PF03989 DNA gyrase C-terminal domain, beta-propeller CLFO_RS09955 PF00986 DNA gyrase B subunit, carboxyl terminus CLFO_RS09955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS09955 PF00204 DNA gyrase B CLFO_RS09955 PF01751 Toprim domain CLFO_RS09960 PF03812 2-keto-3-deoxygluconate permease CLFO_RS09965 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLFO_RS09965 PF08666 SAF domain CLFO_RS09970 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLFO_RS09970 PF08666 SAF domain CLFO_RS09975 PF00158 Sigma-54 interaction domain CLFO_RS09975 PF00989 PAS fold CLFO_RS09975 PF02954 Bacterial regulatory protein, Fis family CLFO_RS09980 PF01497 Periplasmic binding protein CLFO_RS09985 PF00005 ABC transporter CLFO_RS09990 PF01032 FecCD transport family CLFO_RS09995 PF01032 FecCD transport family CLFO_RS10000 PF12833 Helix-turn-helix domain CLFO_RS10000 PF12852 Cupin CLFO_RS10010 PF00654 Voltage gated chloride channel CLFO_RS10015 PF04239 Protein of unknown function (DUF421) CLFO_RS10020 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS10030 PF13375 RnfC Barrel sandwich hybrid domain CLFO_RS10030 PF13237 4Fe-4S dicluster domain CLFO_RS10030 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS10030 PF10531 SLBB domain CLFO_RS10035 PF03319 Ethanolamine utilisation protein EutN/carboxysome CLFO_RS10040 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS10040 PF00171 Aldehyde dehydrogenase family CLFO_RS10055 PF06130 Phosphate propanoyltransferase CLFO_RS10065 PF00936 BMC domain CLFO_RS10070 PF00936 BMC domain CLFO_RS10075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS10075 PF00672 HAMP domain CLFO_RS10075 PF06580 Histidine kinase CLFO_RS10075 PF02743 Cache domain CLFO_RS10080 PF00072 Response regulator receiver domain CLFO_RS10080 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS10085 PF04055 Radical SAM superfamily CLFO_RS10090 PF02901 Pyruvate formate lyase-like CLFO_RS10090 PF01228 Glycine radical CLFO_RS10095 PF00005 ABC transporter CLFO_RS10095 PF13732 Domain of unknown function (DUF4162) CLFO_RS10105 PF00989 PAS fold CLFO_RS10105 PF00672 HAMP domain CLFO_RS10105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS10105 PF18698 Histidine kinase sensor domain CLFO_RS10105 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS10110 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS10110 PF00072 Response regulator receiver domain CLFO_RS10115 PF00005 ABC transporter CLFO_RS10125 PF02687 FtsX-like permease family CLFO_RS10125 PF12704 MacB-like periplasmic core domain CLFO_RS10125 PF00005 ABC transporter CLFO_RS10130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLFO_RS10140 PF00005 ABC transporter CLFO_RS10145 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS10155 PF00589 Phage integrase family CLFO_RS10175 PF13700 Domain of unknown function (DUF4158) CLFO_RS10175 PF01526 Tn3 transposase DDE domain CLFO_RS10180 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS10180 PF00589 Phage integrase family CLFO_RS10200 PF00589 Phage integrase family CLFO_RS10225 PF02310 B12 binding domain CLFO_RS10225 PF04055 Radical SAM superfamily CLFO_RS10230 PF02310 B12 binding domain CLFO_RS10230 PF04055 Radical SAM superfamily CLFO_RS10240 PF02277 Phosphoribosyltransferase CLFO_RS10245 PF01964 Radical SAM ThiC family CLFO_RS10250 PF01964 Radical SAM ThiC family CLFO_RS10255 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS10255 PF00589 Phage integrase family CLFO_RS10260 PF01726 LexA DNA binding domain CLFO_RS10260 PF00717 Peptidase S24-like CLFO_RS10265 PF06838 Methionine gamma-lyase CLFO_RS10280 PF01926 50S ribosome-binding GTPase CLFO_RS10280 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLFO_RS10285 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS10285 PF17866 AAA lid domain CLFO_RS10290 PF17209 Hfq protein CLFO_RS10300 PF08676 MutL C terminal dimerisation domain CLFO_RS10300 PF01119 DNA mismatch repair protein, C-terminal domain CLFO_RS10305 PF05192 MutS domain III CLFO_RS10305 PF05188 MutS domain II CLFO_RS10305 PF00488 MutS domain V CLFO_RS10305 PF05190 MutS family domain IV CLFO_RS10305 PF01624 MutS domain I CLFO_RS10310 PF01938 TRAM domain CLFO_RS10310 PF00919 Uncharacterized protein family UPF0004 CLFO_RS10310 PF04055 Radical SAM superfamily CLFO_RS10370 PF04865 Baseplate J-like protein CLFO_RS10470 PF10668 Phage terminase small subunit CLFO_RS10525 PF00145 C-5 cytosine-specific DNA methylase CLFO_RS10590 PF13476 AAA domain CLFO_RS10620 PF01726 LexA DNA binding domain CLFO_RS10620 PF00717 Peptidase S24-like CLFO_RS10635 PF13408 Recombinase zinc beta ribbon domain CLFO_RS10635 PF00239 Resolvase, N terminal domain CLFO_RS10635 PF07508 Recombinase CLFO_RS10640 PF01966 HD domain CLFO_RS10645 PF01255 Putative undecaprenyl diphosphate synthase CLFO_RS10650 PF00155 Aminotransferase class I and II CLFO_RS10655 PF13411 MerR HTH family regulatory protein CLFO_RS10660 PF05343 M42 glutamyl aminopeptidase CLFO_RS10665 PF05343 M42 glutamyl aminopeptidase CLFO_RS10670 PF05343 M42 glutamyl aminopeptidase CLFO_RS10675 PF01739 CheR methyltransferase, SAM binding domain CLFO_RS10675 PF03705 CheR methyltransferase, all-alpha domain CLFO_RS10680 PF02401 LytB protein CLFO_RS10680 PF00575 S1 RNA binding domain CLFO_RS10685 PF02401 LytB protein CLFO_RS10690 PF02224 Cytidylate kinase CLFO_RS10700 PF00300 Histidine phosphatase superfamily (branch 1) CLFO_RS10705 PF01418 Helix-turn-helix domain, rpiR family CLFO_RS10705 PF01380 SIS domain CLFO_RS10710 PF01975 Survival protein SurE CLFO_RS10720 PF00682 HMGL-like CLFO_RS10720 PF00364 Biotin-requiring enzyme CLFO_RS10720 PF02436 Conserved carboxylase domain CLFO_RS10725 PF06962 Putative rRNA methylase CLFO_RS10735 PF01479 S4 domain CLFO_RS10735 PF00849 RNA pseudouridylate synthase CLFO_RS10740 PF00152 tRNA synthetases class II (D, K and N) CLFO_RS10740 PF01336 OB-fold nucleic acid binding domain CLFO_RS10750 PF00155 Aminotransferase class I and II CLFO_RS10760 PF02811 PHP domain CLFO_RS10765 PF04232 Stage V sporulation protein S (SpoVS) CLFO_RS10770 PF01966 HD domain CLFO_RS10770 PF12072 Domain of unknown function (DUF3552) CLFO_RS10770 PF00013 KH domain CLFO_RS10775 PF00154 recA bacterial DNA recombination protein CLFO_RS10780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS10780 PF01348 Type II intron maturase CLFO_RS10790 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS10805 PF00154 recA bacterial DNA recombination protein CLFO_RS10810 PF01066 CDP-alcohol phosphatidyltransferase CLFO_RS10815 PF00919 Uncharacterized protein family UPF0004 CLFO_RS10815 PF18693 TRAM domain CLFO_RS10815 PF04055 Radical SAM superfamily CLFO_RS10825 PF17854 FtsK alpha domain CLFO_RS10825 PF01580 FtsK/SpoIIIE family CLFO_RS10825 PF09397 Ftsk gamma domain CLFO_RS10830 PF00574 Clp protease CLFO_RS10840 PF05193 Peptidase M16 inactive domain CLFO_RS10840 PF00675 Insulinase (Peptidase family M16) CLFO_RS10850 PF00013 KH domain CLFO_RS10850 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLFO_RS10850 PF01138 3' exoribonuclease family, domain 1 CLFO_RS10850 PF03725 3' exoribonuclease family, domain 2 CLFO_RS10850 PF00575 S1 RNA binding domain CLFO_RS10855 PF00312 Ribosomal protein S15 CLFO_RS10860 PF06574 FAD synthetase CLFO_RS10860 PF01687 Riboflavin kinase CLFO_RS10865 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLFO_RS10865 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLFO_RS10875 PF02033 Ribosome-binding factor A CLFO_RS10880 PF04760 Translation initiation factor IF-2, N-terminal region CLFO_RS10880 PF00009 Elongation factor Tu GTP binding domain CLFO_RS10880 PF11987 Translation-initiation factor 2 CLFO_RS10885 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLFO_RS10890 PF04296 Protein of unknown function (DUF448) CLFO_RS10895 PF00575 S1 RNA binding domain CLFO_RS10895 PF08529 NusA N-terminal domain CLFO_RS10895 PF13184 NusA-like KH domain CLFO_RS10900 PF17384 RimP C-terminal SH3 domain CLFO_RS10900 PF02576 RimP N-terminal domain CLFO_RS10905 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLFO_RS10905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLFO_RS10905 PF14579 Helix-hairpin-helix motif CLFO_RS10905 PF02811 PHP domain CLFO_RS10905 PF00929 Exonuclease CLFO_RS10905 PF01336 OB-fold nucleic acid binding domain CLFO_RS10905 PF11490 DNA polymerase III polC-type N-terminus II CLFO_RS10910 PF00535 Glycosyl transferase family 2 CLFO_RS10915 PF04551 GcpE protein CLFO_RS10920 PF17820 PDZ domain CLFO_RS10920 PF02163 Peptidase family M50 CLFO_RS10925 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLFO_RS10925 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLFO_RS10925 PF13288 DXP reductoisomerase C-terminal domain CLFO_RS10935 PF01255 Putative undecaprenyl diphosphate synthase CLFO_RS10945 PF01765 Ribosome recycling factor CLFO_RS10950 PF00696 Amino acid kinase family CLFO_RS10955 PF00889 Elongation factor TS CLFO_RS10960 PF00318 Ribosomal protein S2 CLFO_RS10985 PF04539 Sigma-70 region 3 CLFO_RS10985 PF04545 Sigma-70, region 4 CLFO_RS10985 PF04542 Sigma-70 region 2 CLFO_RS10990 PF03975 CheD chemotactic sensory transduction CLFO_RS10995 PF04509 CheC-like family CLFO_RS11000 PF01584 CheW-like domain CLFO_RS11005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS11005 PF01627 Hpt domain CLFO_RS11005 PF01584 CheW-like domain CLFO_RS11005 PF07194 P2 response regulator binding domain CLFO_RS11005 PF02895 Signal transducing histidine kinase, homodimeric domain CLFO_RS11010 PF01339 CheB methylesterase CLFO_RS11010 PF00072 Response regulator receiver domain CLFO_RS11020 PF10609 NUBPL iron-transfer P-loop NTPase CLFO_RS11025 PF00448 SRP54-type protein, GTPase domain CLFO_RS11030 PF00771 FHIPEP family CLFO_RS11035 PF01312 FlhB HrpN YscU SpaS Family CLFO_RS11040 PF01311 Bacterial export proteins, family 1 CLFO_RS11045 PF01313 Bacterial export proteins, family 3 CLFO_RS11050 PF00813 FliP family CLFO_RS11060 PF00072 Response regulator receiver domain CLFO_RS11065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLFO_RS11065 PF04509 CheC-like family CLFO_RS11070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLFO_RS11070 PF02154 Flagellar motor switch protein FliM CLFO_RS11080 PF00691 OmpA family CLFO_RS11080 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLFO_RS11085 PF01618 MotA/TolQ/ExbB proton channel family CLFO_RS11095 PF00460 Flagella basal body rod protein CLFO_RS11095 PF07559 Flagellar basal body protein FlaE CLFO_RS11095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLFO_RS11105 PF03963 Flagellar hook capping protein - N-terminal region CLFO_RS11125 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLFO_RS11125 PF18269 T3SS EscN ATPase C-terminal domain CLFO_RS11125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLFO_RS11135 PF14841 FliG middle domain CLFO_RS11135 PF01706 FliG C-terminal domain CLFO_RS11135 PF14842 FliG N-terminal domain CLFO_RS11140 PF01514 Secretory protein of YscJ/FliF family CLFO_RS11140 PF08345 Flagellar M-ring protein C-terminal CLFO_RS11145 PF02049 Flagellar hook-basal body complex protein FliE CLFO_RS11150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLFO_RS11150 PF00460 Flagella basal body rod protein CLFO_RS11155 PF00460 Flagella basal body rod protein CLFO_RS11160 PF08222 CodY helix-turn-helix domain CLFO_RS11160 PF06018 CodY GAF-like domain CLFO_RS11165 PF10431 C-terminal, D2-small domain, of ClpB protein CLFO_RS11165 PF07724 AAA domain (Cdc48 subfamily) CLFO_RS11165 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS11170 PF00227 Proteasome subunit CLFO_RS11175 PF01751 Toprim domain CLFO_RS11175 PF01131 DNA topoisomerase CLFO_RS11175 PF01396 Topoisomerase DNA binding C4 zinc finger CLFO_RS11180 PF18255 DNA processing protein A sterile alpha motif domain CLFO_RS11180 PF02481 DNA recombination-mediator protein A CLFO_RS11185 PF01078 Magnesium chelatase, subunit ChlI CLFO_RS11185 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLFO_RS11190 PF02021 Uncharacterised protein family UPF0102 CLFO_RS11195 PF01351 Ribonuclease HII CLFO_RS11200 PF01926 50S ribosome-binding GTPase CLFO_RS11205 PF01245 Ribosomal protein L19 CLFO_RS11210 PF01746 tRNA (Guanine-1)-methyltransferase CLFO_RS11215 PF01782 RimM N-terminal domain CLFO_RS11215 PF05239 PRC-barrel domain CLFO_RS11225 PF00886 Ribosomal protein S16 CLFO_RS11230 PF00448 SRP54-type protein, GTPase domain CLFO_RS11230 PF02978 Signal peptide binding domain CLFO_RS11230 PF02881 SRP54-type protein, helical bundle domain CLFO_RS11235 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CLFO_RS11240 PF00448 SRP54-type protein, GTPase domain CLFO_RS11240 PF02881 SRP54-type protein, helical bundle domain CLFO_RS11245 PF02463 RecF/RecN/SMC N terminal domain CLFO_RS11245 PF06470 SMC proteins Flexible Hinge Domain CLFO_RS11255 PF14622 Ribonuclease-III-like CLFO_RS11255 PF00035 Double-stranded RNA binding motif CLFO_RS11260 PF00109 Beta-ketoacyl synthase, N-terminal domain CLFO_RS11260 PF02801 Beta-ketoacyl synthase, C-terminal domain CLFO_RS11265 PF00550 Phosphopantetheine attachment site CLFO_RS11275 PF00698 Acyl transferase domain CLFO_RS11280 PF03060 Nitronate monooxygenase CLFO_RS11285 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLFO_RS11285 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLFO_RS11290 PF02504 Fatty acid synthesis protein CLFO_RS11295 PF03061 Thioesterase superfamily CLFO_RS11300 PF01783 Ribosomal L32p protein family CLFO_RS11305 PF02620 Large ribosomal RNA subunit accumulation protein YceD CLFO_RS11310 PF00871 Acetokinase family CLFO_RS11315 PF05636 HIGH Nucleotidyl Transferase CLFO_RS11320 PF07670 Nucleoside recognition CLFO_RS11330 PF01467 Cytidylyltransferase-like CLFO_RS11340 PF00271 Helicase conserved C-terminal domain CLFO_RS11340 PF00270 DEAD/DEAH box helicase CLFO_RS11340 PF17191 RecG wedge domain CLFO_RS11345 PF02734 DAK2 domain CLFO_RS11345 PF13684 Dihydroxyacetone kinase family CLFO_RS11350 PF03780 Asp23 family, cell envelope-related function CLFO_RS11355 PF00830 Ribosomal L28 family CLFO_RS11365 PF00834 Ribulose-phosphate 3 epimerase family CLFO_RS11370 PF16745 RsgA N-terminal domain CLFO_RS11370 PF03193 RsgA GTPase CLFO_RS11375 PF00069 Protein kinase domain CLFO_RS11375 PF03793 PASTA domain CLFO_RS11385 PF04055 Radical SAM superfamily CLFO_RS11390 PF01189 16S rRNA methyltransferase RsmB/F CLFO_RS11390 PF01029 NusB family CLFO_RS11395 PF04298 Putative neutral zinc metallopeptidase CLFO_RS11405 PF02911 Formyl transferase, C-terminal domain CLFO_RS11405 PF00551 Formyl transferase CLFO_RS11410 PF01327 Polypeptide deformylase CLFO_RS11415 PF04851 Type III restriction enzyme, res subunit CLFO_RS11415 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLFO_RS11415 PF18074 Primosomal protein N C-terminal domain CLFO_RS11415 PF17764 3′ DNA-binding domain (3′BD) CLFO_RS11415 PF00271 Helicase conserved C-terminal domain CLFO_RS11420 PF02441 Flavoprotein CLFO_RS11420 PF04127 DNA / pantothenate metabolism flavoprotein CLFO_RS11425 PF01192 RNA polymerase Rpb6 CLFO_RS11430 PF00625 Guanylate kinase CLFO_RS11435 PF04025 Domain of unknown function (DUF370) CLFO_RS11440 PF03755 YicC-like family, N-terminal region CLFO_RS11440 PF08340 Domain of unknown function (DUF1732) CLFO_RS11445 PF01678 Diaminopimelate epimerase CLFO_RS11450 PF05670 NFACT protein RNA binding domain CLFO_RS11455 PF00156 Phosphoribosyl transferase domain CLFO_RS11460 PF01479 S4 domain CLFO_RS11460 PF00849 RNA pseudouridylate synthase CLFO_RS11465 PF01252 Signal peptidase (SPase) II CLFO_RS11480 PF01048 Phosphorylase superfamily CLFO_RS11485 PF05103 DivIVA protein CLFO_RS11490 PF17774 Putative RNA-binding domain in YlmH CLFO_RS11490 PF01479 S4 domain CLFO_RS11500 PF04472 Cell division protein SepF CLFO_RS11505 PF01168 Alanine racemase, N-terminal domain CLFO_RS11515 PF01522 Polysaccharide deacetylase CLFO_RS11535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS11535 PF00672 HAMP domain CLFO_RS11535 PF02743 Cache domain CLFO_RS11555 PF00271 Helicase conserved C-terminal domain CLFO_RS11555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLFO_RS11555 PF04851 Type III restriction enzyme, res subunit CLFO_RS11555 PF08463 EcoEI R protein C-terminal CLFO_RS11565 PF02384 N-6 DNA Methylase CLFO_RS11565 PF12161 HsdM N-terminal domain CLFO_RS11600 PF09547 Stage IV sporulation protein A (spore_IV_A) CLFO_RS11605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLFO_RS11605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLFO_RS11610 PF02660 Glycerol-3-phosphate acyltransferase CLFO_RS11615 PF01926 50S ribosome-binding GTPase CLFO_RS11615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLFO_RS11640 PF14045 YIEGIA protein CLFO_RS11655 PF00989 PAS fold CLFO_RS11655 PF18698 Histidine kinase sensor domain CLFO_RS11655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS11655 PF00672 HAMP domain CLFO_RS11655 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS11660 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS11660 PF00072 Response regulator receiver domain CLFO_RS11665 PF02578 Multi-copper polyphenol oxidoreductase laccase CLFO_RS11670 PF03477 ATP cone domain CLFO_RS11675 PF05239 PRC-barrel domain CLFO_RS11680 PF04539 Sigma-70 region 3 CLFO_RS11680 PF04542 Sigma-70 region 2 CLFO_RS11680 PF04545 Sigma-70, region 4 CLFO_RS11685 PF04542 Sigma-70 region 2 CLFO_RS11685 PF04545 Sigma-70, region 4 CLFO_RS11690 PF03419 Sporulation factor SpoIIGA CLFO_RS11695 PF12327 FtsZ family, C-terminal domain CLFO_RS11695 PF00091 Tubulin/FtsZ family, GTPase domain CLFO_RS11700 PF06947 Protein of unknown function (DUF1290) CLFO_RS11710 PF05949 Bacterial protein of unknown function (DUF881) CLFO_RS11715 PF03799 Cell division protein FtsQ CLFO_RS11715 PF08478 POTRA domain, FtsQ-type CLFO_RS11720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLFO_RS11725 PF04101 Glycosyltransferase family 28 C-terminal domain CLFO_RS11725 PF03033 Glycosyltransferase family 28 N-terminal domain CLFO_RS11730 PF01098 Cell cycle protein CLFO_RS11735 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS11735 PF08245 Mur ligase middle domain CLFO_RS11740 PF00953 Glycosyl transferase family 4 CLFO_RS11745 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS11745 PF08245 Mur ligase middle domain CLFO_RS11745 PF01225 Mur ligase family, catalytic domain CLFO_RS11750 PF02875 Mur ligase family, glutamate ligase domain CLFO_RS11750 PF01225 Mur ligase family, catalytic domain CLFO_RS11750 PF08245 Mur ligase middle domain CLFO_RS11755 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS11755 PF03793 PASTA domain CLFO_RS11755 PF03717 Penicillin-binding Protein dimerisation domain CLFO_RS11765 PF01795 MraW methylase family CLFO_RS11770 PF02381 MraZ protein, putative antitoxin-like CLFO_RS11775 PF01790 Prolipoprotein diacylglyceryl transferase CLFO_RS11790 PF01791 DeoC/LacD family aldolase CLFO_RS11795 PF06130 Phosphate propanoyltransferase CLFO_RS11810 PF00156 Phosphoribosyl transferase domain CLFO_RS11815 PF01923 Cobalamin adenosyltransferase CLFO_RS11820 PF00293 NUDIX domain CLFO_RS11830 PF01578 Cytochrome C assembly protein CLFO_RS11840 PF02335 Cytochrome c552 CLFO_RS11845 PF01593 Flavin containing amine oxidoreductase CLFO_RS11850 PF02581 Thiamine monophosphate synthase CLFO_RS11860 PF08543 Phosphomethylpyrimidine kinase CLFO_RS11900 PF05067 Manganese containing catalase CLFO_RS11920 PF02687 FtsX-like permease family CLFO_RS11920 PF00005 ABC transporter CLFO_RS11920 PF12704 MacB-like periplasmic core domain CLFO_RS11925 PF00005 ABC transporter CLFO_RS11930 PF12704 MacB-like periplasmic core domain CLFO_RS11930 PF02687 FtsX-like permease family CLFO_RS11930 PF00005 ABC transporter CLFO_RS11945 PF02335 Cytochrome c552 CLFO_RS11950 PF05140 ResB-like family CLFO_RS11955 PF01578 Cytochrome C assembly protein CLFO_RS11960 PF18011 C-terminal domain found in long catalases CLFO_RS11960 PF00199 Catalase CLFO_RS11960 PF06628 Catalase-related immune-responsive CLFO_RS11970 PF12792 CSS motif domain associated with EAL CLFO_RS11970 PF00563 EAL domain CLFO_RS11980 PF09827 CRISPR associated protein Cas2 CLFO_RS11985 PF01867 CRISPR associated protein Cas1 CLFO_RS11995 PF18019 HD domain CLFO_RS11995 PF00270 DEAD/DEAH box helicase CLFO_RS11995 PF18395 Cas3 C-terminal domain CLFO_RS12025 PF04199 Putative cyclase CLFO_RS12030 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CLFO_RS12030 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CLFO_RS12035 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CLFO_RS12035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLFO_RS12045 PF02310 B12 binding domain CLFO_RS12045 PF02607 B12 binding domain CLFO_RS12065 PF00005 ABC transporter CLFO_RS12070 PF00364 Biotin-requiring enzyme CLFO_RS12075 PF02785 Biotin carboxylase C-terminal domain CLFO_RS12075 PF00289 Biotin carboxylase, N-terminal domain CLFO_RS12075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLFO_RS12080 PF01039 Carboxyl transferase domain CLFO_RS12085 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLFO_RS12095 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLFO_RS12100 PF02310 B12 binding domain CLFO_RS12100 PF02607 B12 binding domain CLFO_RS12115 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLFO_RS12115 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLFO_RS12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS12135 PF00672 HAMP domain CLFO_RS12135 PF00989 PAS fold CLFO_RS12135 PF18698 Histidine kinase sensor domain CLFO_RS12135 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS12140 PF04073 Aminoacyl-tRNA editing domain CLFO_RS12145 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS12150 PF07883 Cupin domain CLFO_RS12170 PF01695 IstB-like ATP binding protein CLFO_RS12175 PF00155 Aminotransferase class I and II CLFO_RS12180 PF00005 ABC transporter CLFO_RS12185 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS12190 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLFO_RS12195 PF13416 Bacterial extracellular solute-binding protein CLFO_RS12200 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS12205 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS12210 PF17912 MalK OB fold domain CLFO_RS12210 PF00005 ABC transporter CLFO_RS12215 PF00149 Calcineurin-like phosphoesterase CLFO_RS12215 PF00746 LPXTG cell wall anchor motif CLFO_RS12215 PF00565 Staphylococcal nuclease homologue CLFO_RS12215 PF02872 5'-nucleotidase, C-terminal domain CLFO_RS12230 PF00075 RNase H CLFO_RS12235 PF01784 NIF3 (NGG1p interacting factor 3) CLFO_RS12240 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CLFO_RS12250 PF04545 Sigma-70, region 4 CLFO_RS12250 PF04542 Sigma-70 region 2 CLFO_RS12250 PF00140 Sigma-70 factor, region 1.2 CLFO_RS12250 PF03979 Sigma-70 factor, region 1.1 CLFO_RS12250 PF04539 Sigma-70 region 3 CLFO_RS12255 PF08275 DNA primase catalytic core, N-terminal domain CLFO_RS12255 PF01807 CHC2 zinc finger CLFO_RS12255 PF10410 DnaB-helicase binding domain of primase CLFO_RS12260 PF01966 HD domain CLFO_RS12260 PF13286 Phosphohydrolase-associated domain CLFO_RS12270 PF04542 Sigma-70 region 2 CLFO_RS12270 PF08281 Sigma-70, region 4 CLFO_RS12290 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS12290 PF17862 AAA+ lid domain CLFO_RS12290 PF01434 Peptidase family M41 CLFO_RS12290 PF06480 FtsH Extracellular CLFO_RS12295 PF02096 60Kd inner membrane protein CLFO_RS12300 PF13091 PLD-like domain CLFO_RS12305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS12305 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS12305 PF00672 HAMP domain CLFO_RS12310 PF00072 Response regulator receiver domain CLFO_RS12310 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS12345 PF00155 Aminotransferase class I and II CLFO_RS12365 PF02896 PEP-utilising enzyme, TIM barrel domain CLFO_RS12365 PF00391 PEP-utilising enzyme, mobile domain CLFO_RS12365 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLFO_RS12370 PF03618 Kinase/pyrophosphorylase CLFO_RS12375 PF08279 HTH domain CLFO_RS12375 PF00571 CBS domain CLFO_RS12380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLFO_RS12380 PF03129 Anticodon binding domain CLFO_RS12385 PF00889 Elongation factor TS CLFO_RS12390 PF02565 Recombination protein O C terminal CLFO_RS12390 PF11967 Recombination protein O N terminal CLFO_RS12400 PF01926 50S ribosome-binding GTPase CLFO_RS12400 PF07650 KH domain CLFO_RS12405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLFO_RS12410 PF17479 Protein of unknown function (DUF3048) C-terminal domain CLFO_RS12410 PF11258 Protein of unknown function (DUF3048) N-terminal domain CLFO_RS12420 PF02130 Uncharacterized protein family UPF0054 CLFO_RS12425 PF01966 HD domain CLFO_RS12425 PF07697 7TM-HD extracellular CLFO_RS12425 PF07698 7TM receptor with intracellular HD hydrolase CLFO_RS12430 PF02562 PhoH-like protein CLFO_RS12440 PF07873 YabP family CLFO_RS12450 PF12127 SigmaW regulon antibacterial CLFO_RS12455 PF01972 Serine dehydrogenase proteinase CLFO_RS12455 PF01957 NfeD-like C-terminal, partner-binding CLFO_RS12460 PF03372 Endonuclease/Exonuclease/phosphatase family CLFO_RS12465 PF09424 Yqey-like protein CLFO_RS12470 PF01165 Ribosomal protein S21 CLFO_RS12475 PF01230 HIT domain CLFO_RS12480 PF04055 Radical SAM superfamily CLFO_RS12480 PF01938 TRAM domain CLFO_RS12480 PF00919 Uncharacterized protein family UPF0004 CLFO_RS12485 PF04452 RNA methyltransferase CLFO_RS12495 PF00684 DnaJ central domain CLFO_RS12495 PF01556 DnaJ C terminal domain CLFO_RS12495 PF00226 DnaJ domain CLFO_RS12500 PF00012 Hsp70 protein CLFO_RS12505 PF01025 GrpE CLFO_RS12510 PF01628 HrcA protein C terminal domain CLFO_RS12515 PF04055 Radical SAM superfamily CLFO_RS12515 PF06969 HemN C-terminal domain CLFO_RS12520 PF03144 Elongation factor Tu domain 2 CLFO_RS12520 PF06421 GTP-binding protein LepA C-terminus CLFO_RS12520 PF00009 Elongation factor Tu GTP binding domain CLFO_RS12520 PF00679 Elongation factor G C-terminus CLFO_RS12535 PF03418 Germination protease CLFO_RS12540 PF01649 Ribosomal protein S20 CLFO_RS12550 PF03772 Competence protein CLFO_RS12550 PF00753 Metallo-beta-lactamase superfamily CLFO_RS12550 PF13567 Domain of unknown function (DUF4131) CLFO_RS12560 PF00072 Response regulator receiver domain CLFO_RS12560 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS12565 PF12704 MacB-like periplasmic core domain CLFO_RS12565 PF02687 FtsX-like permease family CLFO_RS12565 PF00005 ABC transporter CLFO_RS12590 PF00005 ABC transporter CLFO_RS12615 PF02687 FtsX-like permease family CLFO_RS12615 PF00005 ABC transporter CLFO_RS12615 PF12704 MacB-like periplasmic core domain CLFO_RS12635 PF12706 Beta-lactamase superfamily domain CLFO_RS12655 PF02272 DHHA1 domain CLFO_RS12655 PF01411 tRNA synthetases class II (A) CLFO_RS12655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS12660 PF04608 Phosphatidylglycerophosphatase A CLFO_RS12665 PF00270 DEAD/DEAH box helicase CLFO_RS12665 PF00271 Helicase conserved C-terminal domain CLFO_RS12690 PF02223 Thymidylate kinase CLFO_RS12695 PF00209 Sodium:neurotransmitter symporter family CLFO_RS12700 PF00005 ABC transporter CLFO_RS12700 PF12704 MacB-like periplasmic core domain CLFO_RS12700 PF02687 FtsX-like permease family CLFO_RS12710 PF00005 ABC transporter CLFO_RS12715 PF00881 Nitroreductase family CLFO_RS12720 PF03773 Predicted permease CLFO_RS12730 PF02683 Cytochrome C biogenesis protein transmembrane region CLFO_RS12730 PF11412 Disulphide bond corrector protein DsbC CLFO_RS12735 PF00085 Thioredoxin CLFO_RS12740 PF01022 Bacterial regulatory protein, arsR family CLFO_RS12755 PF12729 Four helix bundle sensory module for signal transduction CLFO_RS12755 PF00672 HAMP domain CLFO_RS12755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS12765 PF00120 Glutamine synthetase, catalytic domain CLFO_RS12765 PF03951 Glutamine synthetase, beta-Grasp domain CLFO_RS12770 PF02934 GatB/GatE catalytic domain CLFO_RS12770 PF02637 GatB domain CLFO_RS12775 PF01425 Amidase CLFO_RS12780 PF02686 Glu-tRNAGln amidotransferase C subunit CLFO_RS12785 PF00152 tRNA synthetases class II (D, K and N) CLFO_RS12785 PF01336 OB-fold nucleic acid binding domain CLFO_RS12790 PF01842 ACT domain CLFO_RS12795 PF00205 Thiamine pyrophosphate enzyme, central domain CLFO_RS12795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS12795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLFO_RS12825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS12825 PF00005 ABC transporter CLFO_RS12830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS12830 PF00005 ABC transporter CLFO_RS12835 PF00005 ABC transporter CLFO_RS12835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS12850 PF00107 Zinc-binding dehydrogenase CLFO_RS12850 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS12855 PF02447 GntP family permease CLFO_RS12860 PF00106 short chain dehydrogenase CLFO_RS12865 PF03786 D-mannonate dehydratase (UxuA) CLFO_RS12875 PF08903 Domain of unknown function (DUF1846) CLFO_RS12885 PF00005 ABC transporter CLFO_RS12885 PF00664 ABC transporter transmembrane region CLFO_RS12890 PF00664 ABC transporter transmembrane region CLFO_RS12890 PF00005 ABC transporter CLFO_RS12895 PF00005 ABC transporter CLFO_RS12895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS12900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS12900 PF00005 ABC transporter CLFO_RS12905 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS12905 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS12910 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS12915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS12930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS12935 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS12940 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS12945 PF04962 KduI/IolB family CLFO_RS12950 PF07729 FCD domain CLFO_RS12950 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS12955 PF00689 Cation transporting ATPase, C-terminus CLFO_RS12955 PF00690 Cation transporter/ATPase, N-terminus CLFO_RS12960 PF02342 TerD domain CLFO_RS12965 PF02342 TerD domain CLFO_RS12970 PF02342 TerD domain CLFO_RS12975 PF05816 Toxic anion resistance protein (TelA) CLFO_RS12980 PF14266 Putative component of 'biosynthetic module' CLFO_RS12985 PF01235 Sodium:alanine symporter family CLFO_RS12990 PF00072 Response regulator receiver domain CLFO_RS12990 PF00158 Sigma-54 interaction domain CLFO_RS12990 PF02954 Bacterial regulatory protein, Fis family CLFO_RS12995 PF00395 S-layer homology domain CLFO_RS12995 PF00963 Cohesin domain CLFO_RS13005 PF00005 ABC transporter CLFO_RS13020 PF00395 S-layer homology domain CLFO_RS13020 PF00963 Cohesin domain CLFO_RS13045 PF03459 TOBE domain CLFO_RS13045 PF17912 MalK OB fold domain CLFO_RS13045 PF00005 ABC transporter CLFO_RS13050 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS13055 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS13060 PF13416 Bacterial extracellular solute-binding protein CLFO_RS13080 PF04055 Radical SAM superfamily CLFO_RS13080 PF06969 HemN C-terminal domain CLFO_RS13090 PF01053 Cys/Met metabolism PLP-dependent enzyme CLFO_RS13095 PF01053 Cys/Met metabolism PLP-dependent enzyme CLFO_RS13100 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLFO_RS13100 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLFO_RS13105 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS13105 PF00107 Zinc-binding dehydrogenase CLFO_RS13115 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS13120 PF00005 ABC transporter CLFO_RS13125 PF12833 Helix-turn-helix domain CLFO_RS13125 PF00072 Response regulator receiver domain CLFO_RS13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS13130 PF06580 Histidine kinase CLFO_RS13130 PF02743 Cache domain CLFO_RS13130 PF00672 HAMP domain CLFO_RS13140 PF00672 HAMP domain CLFO_RS13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS13140 PF02743 Cache domain CLFO_RS13150 PF03466 LysR substrate binding domain CLFO_RS13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLFO_RS13155 PF03601 Conserved hypothetical protein 698 CLFO_RS13165 PF05190 MutS family domain IV CLFO_RS13165 PF01624 MutS domain I CLFO_RS13165 PF05188 MutS domain II CLFO_RS13165 PF00488 MutS domain V CLFO_RS13165 PF05192 MutS domain III CLFO_RS13175 PF02560 Cyanate lyase C-terminal domain CLFO_RS13185 PF01638 HxlR-like helix-turn-helix CLFO_RS13200 PF00155 Aminotransferase class I and II CLFO_RS13200 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS13205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLFO_RS13205 PF03466 LysR substrate binding domain CLFO_RS13215 PF01261 Xylose isomerase-like TIM barrel CLFO_RS13225 PF01037 Lrp/AsnC ligand binding domain CLFO_RS13240 PF08241 Methyltransferase domain CLFO_RS13265 PF00872 Transposase, Mutator family CLFO_RS13290 PF08281 Sigma-70, region 4 CLFO_RS13290 PF04542 Sigma-70 region 2 CLFO_RS13305 PF18010 Cry35Ab1 HTH C-terminal domain CLFO_RS13305 PF00239 Resolvase, N terminal domain CLFO_RS13325 PF00872 Transposase, Mutator family CLFO_RS13340 PF13007 Transposase C of IS166 homeodomain CLFO_RS13340 PF13817 IS66 C-terminal element CLFO_RS13340 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS13340 PF03050 Transposase IS66 family CLFO_RS13355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS13360 PF02633 Creatinine amidohydrolase CLFO_RS13390 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS13400 PF00589 Phage integrase family CLFO_RS13400 PF13495 Phage integrase, N-terminal SAM-like domain CLFO_RS13410 PF01541 GIY-YIG catalytic domain CLFO_RS13410 PF08459 UvrC Helix-hairpin-helix N-terminal CLFO_RS13410 PF02151 UvrB/uvrC motif CLFO_RS13425 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS13425 PF00072 Response regulator receiver domain CLFO_RS13430 PF00672 HAMP domain CLFO_RS13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS13430 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS13450 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS13450 PF05569 BlaR1 peptidase M56 CLFO_RS13455 PF03965 Penicillinase repressor CLFO_RS13460 PF00149 Calcineurin-like phosphoesterase CLFO_RS13465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS13475 PF03063 Prismane/CO dehydrogenase family CLFO_RS13480 PF02082 Transcriptional regulator CLFO_RS13485 PF00902 Sec-independent protein translocase protein (TatC) CLFO_RS13490 PF02416 mttA/Hcf106 family CLFO_RS13495 PF00902 Sec-independent protein translocase protein (TatC) CLFO_RS13525 PF01790 Prolipoprotein diacylglyceryl transferase CLFO_RS13530 PF02683 Cytochrome C biogenesis protein transmembrane region CLFO_RS13540 PF00989 PAS fold CLFO_RS13540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS13540 PF00672 HAMP domain CLFO_RS13540 PF18698 Histidine kinase sensor domain CLFO_RS13540 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS13545 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS13545 PF00072 Response regulator receiver domain CLFO_RS13560 PF13247 4Fe-4S dicluster domain CLFO_RS13560 PF09163 Formate dehydrogenase N, transmembrane CLFO_RS13560 PF12800 4Fe-4S binding domain CLFO_RS13570 PF00963 Cohesin domain CLFO_RS13570 PF00395 S-layer homology domain CLFO_RS13575 PF00704 Glycosyl hydrolases family 18 CLFO_RS13575 PF01476 LysM domain CLFO_RS13580 PF00403 Heavy-metal-associated domain CLFO_RS13600 PF01209 ubiE/COQ5 methyltransferase family CLFO_RS13615 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS13615 PF00072 Response regulator receiver domain CLFO_RS13630 PF00694 Aconitase C-terminal domain CLFO_RS13635 PF03390 2-hydroxycarboxylate transporter family CLFO_RS13640 PF08279 HTH domain CLFO_RS13640 PF00072 Response regulator receiver domain CLFO_RS13645 PF00989 PAS fold CLFO_RS13645 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLFO_RS13645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS13645 PF17203 Single cache domain 3 CLFO_RS13650 PF00890 FAD binding domain CLFO_RS13650 PF04205 FMN-binding domain CLFO_RS13650 PF03358 NADPH-dependent FMN reductase CLFO_RS13675 PF04073 Aminoacyl-tRNA editing domain CLFO_RS13680 PF00082 Subtilase family CLFO_RS13690 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS13690 PF00989 PAS fold CLFO_RS13690 PF16736 Single Cache-like CLFO_RS13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS13695 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS13695 PF00072 Response regulator receiver domain CLFO_RS13705 PF00892 EamA-like transporter family CLFO_RS13710 PF00155 Aminotransferase class I and II CLFO_RS13715 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS13715 PF00155 Aminotransferase class I and II CLFO_RS13725 PF03453 MoeA N-terminal region (domain I and II) CLFO_RS13725 PF00994 Probable molybdopterin binding domain CLFO_RS13725 PF03454 MoeA C-terminal region (domain IV) CLFO_RS13745 PF00005 ABC transporter CLFO_RS13750 PF01032 FecCD transport family CLFO_RS13755 PF01497 Periplasmic binding protein CLFO_RS13760 PF02687 FtsX-like permease family CLFO_RS13760 PF12704 MacB-like periplasmic core domain CLFO_RS13760 PF00005 ABC transporter CLFO_RS13765 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLFO_RS13775 PF08241 Methyltransferase domain CLFO_RS13780 PF00005 ABC transporter CLFO_RS13785 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS13790 PF09084 NMT1/THI5 like CLFO_RS13815 PF02625 XdhC and CoxI family CLFO_RS13815 PF13478 XdhC Rossmann domain CLFO_RS13835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLFO_RS13835 PF03466 LysR substrate binding domain CLFO_RS13840 PF04143 Sulphur transport CLFO_RS13850 PF04143 Sulphur transport CLFO_RS13855 PF00902 Sec-independent protein translocase protein (TatC) CLFO_RS13860 PF02416 mttA/Hcf106 family CLFO_RS13880 PF00905 Penicillin binding protein transpeptidase domain CLFO_RS13880 PF05569 BlaR1 peptidase M56 CLFO_RS13885 PF03965 Penicillinase repressor CLFO_RS13895 PF12849 PBP superfamily domain CLFO_RS13900 PF01979 Amidohydrolase family CLFO_RS13905 PF02219 Methylenetetrahydrofolate reductase CLFO_RS13910 PF02638 Glycosyl hydrolase-like 10 CLFO_RS13915 PF07670 Nucleoside recognition CLFO_RS13925 PF02709 N-terminal domain of galactosyltransferase CLFO_RS13925 PF00535 Glycosyl transferase family 2 CLFO_RS13935 PF00581 Rhodanese-like domain CLFO_RS13940 PF08402 TOBE domain CLFO_RS13940 PF00005 ABC transporter CLFO_RS13955 PF13416 Bacterial extracellular solute-binding protein CLFO_RS13965 PF09335 SNARE associated Golgi protein CLFO_RS13975 PF09335 SNARE associated Golgi protein CLFO_RS13990 PF00313 'Cold-shock' DNA-binding domain CLFO_RS14005 PF02607 B12 binding domain CLFO_RS14005 PF02310 B12 binding domain CLFO_RS14020 PF00270 DEAD/DEAH box helicase CLFO_RS14020 PF00271 Helicase conserved C-terminal domain CLFO_RS14030 PF06445 GyrI-like small molecule binding domain CLFO_RS14030 PF12833 Helix-turn-helix domain CLFO_RS14035 PF01980 tRNA-methyltransferase O CLFO_RS14035 PF18389 TrmO C-terminal domain CLFO_RS14040 PF02901 Pyruvate formate lyase-like CLFO_RS14040 PF01228 Glycine radical CLFO_RS14045 PF04055 Radical SAM superfamily CLFO_RS14050 PF01381 Helix-turn-helix CLFO_RS14080 PF11208 Protein of unknown function (DUF2992) CLFO_RS14095 PF02110 Hydroxyethylthiazole kinase family CLFO_RS14105 PF01613 Flavin reductase like domain CLFO_RS14130 PF00701 Dihydrodipicolinate synthetase family CLFO_RS14135 PF01266 FAD dependent oxidoreductase CLFO_RS14140 PF04324 BFD-like [2Fe-2S] binding domain CLFO_RS14140 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS14150 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS14150 PF04324 BFD-like [2Fe-2S] binding domain CLFO_RS14160 PF00158 Sigma-54 interaction domain CLFO_RS14175 PF01476 LysM domain CLFO_RS14175 PF05257 CHAP domain CLFO_RS14180 PF00092 von Willebrand factor type A domain CLFO_RS14240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS14260 PF01668 SmpB protein CLFO_RS14270 PF17876 Cold shock domain CLFO_RS14270 PF00773 RNB domain CLFO_RS14270 PF08206 Ribonuclease B OB domain CLFO_RS14270 PF00575 S1 RNA binding domain CLFO_RS14280 PF03030 Inorganic H+ pyrophosphatase CLFO_RS14285 PF03840 Preprotein translocase SecG subunit CLFO_RS14290 PF03952 Enolase, N-terminal domain CLFO_RS14290 PF00113 Enolase, C-terminal TIM barrel domain CLFO_RS14295 PF01676 Metalloenzyme superfamily CLFO_RS14295 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLFO_RS14300 PF00121 Triosephosphate isomerase CLFO_RS14305 PF00162 Phosphoglycerate kinase CLFO_RS14310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLFO_RS14310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLFO_RS14315 PF04198 Putative sugar-binding domain CLFO_RS14320 PF04963 Sigma-54 factor, core binding domain CLFO_RS14320 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLFO_RS14320 PF04552 Sigma-54, DNA binding domain CLFO_RS14325 PF02504 Fatty acid synthesis protein CLFO_RS14330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLFO_RS14345 PF09338 Glycine/sarcosine/betaine reductase component B subunits CLFO_RS14350 PF00085 Thioredoxin CLFO_RS14355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLFO_RS14365 PF02645 Uncharacterised protein, DegV family COG1307 CLFO_RS14370 PF00588 SpoU rRNA Methylase family CLFO_RS14385 PF04239 Protein of unknown function (DUF421) CLFO_RS14395 PF07875 Coat F domain CLFO_RS14400 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS14400 PF13823 Alcohol dehydrogenase GroES-associated CLFO_RS14400 PF00107 Zinc-binding dehydrogenase CLFO_RS14410 PF07875 Coat F domain CLFO_RS14420 PF09557 Domain of unknown function (DUF2382) CLFO_RS14420 PF05239 PRC-barrel domain CLFO_RS14425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS14430 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS14440 PF05504 Spore germination B3/ GerAC like, C-terminal CLFO_RS14445 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS14450 PF00732 GMC oxidoreductase CLFO_RS14450 PF05199 GMC oxidoreductase CLFO_RS14475 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS14480 PF00005 ABC transporter CLFO_RS14495 PF00005 ABC transporter CLFO_RS14500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS14505 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS14505 PF00072 Response regulator receiver domain CLFO_RS14510 PF07883 Cupin domain CLFO_RS14510 PF01381 Helix-turn-helix CLFO_RS14530 PF09345 Domain of unknown function (DUF1987) CLFO_RS14540 PF03707 Bacterial signalling protein N terminal repeat CLFO_RS14540 PF13188 PAS domain CLFO_RS14540 PF00563 EAL domain CLFO_RS14540 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS14545 PF00701 Dihydrodipicolinate synthetase family CLFO_RS14550 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLFO_RS14555 PF08666 SAF domain CLFO_RS14560 PF03812 2-keto-3-deoxygluconate permease CLFO_RS14565 PF00682 HMGL-like CLFO_RS14565 PF07836 DmpG-like communication domain CLFO_RS14570 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLFO_RS14570 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CLFO_RS14575 PF09339 IclR helix-turn-helix domain CLFO_RS14575 PF01614 Bacterial transcriptional regulator CLFO_RS14585 PF00072 Response regulator receiver domain CLFO_RS14585 PF00158 Sigma-54 interaction domain CLFO_RS14585 PF02954 Bacterial regulatory protein, Fis family CLFO_RS14590 PF00672 HAMP domain CLFO_RS14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS14590 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS14590 PF13426 PAS domain CLFO_RS14595 PF02254 TrkA-N domain CLFO_RS14595 PF02080 TrkA-C domain CLFO_RS14600 PF02386 Cation transport protein CLFO_RS14610 PF02080 TrkA-C domain CLFO_RS14610 PF02254 TrkA-N domain CLFO_RS14615 PF00072 Response regulator receiver domain CLFO_RS14620 PF00072 Response regulator receiver domain CLFO_RS14620 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS14625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS14625 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS14625 PF00989 PAS fold CLFO_RS14625 PF16736 Single Cache-like CLFO_RS14630 PF00484 Carbonic anhydrase CLFO_RS14635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS14635 PF00672 HAMP domain CLFO_RS14635 PF02743 Cache domain CLFO_RS14640 PF00117 Glutamine amidotransferase class-I CLFO_RS14640 PF00958 GMP synthase C terminal domain CLFO_RS14640 PF02540 NAD synthase CLFO_RS14680 PF01554 MatE CLFO_RS14690 PF00005 ABC transporter CLFO_RS14695 PF08125 Mannitol dehydrogenase C-terminal domain CLFO_RS14695 PF01232 Mannitol dehydrogenase Rossmann domain CLFO_RS14700 PF03786 D-mannonate dehydratase (UxuA) CLFO_RS14705 PF02614 Glucuronate isomerase CLFO_RS14710 PF07729 FCD domain CLFO_RS14710 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS14715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS14720 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS14725 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS14730 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS14740 PF01171 PP-loop family CLFO_RS14745 PF01131 DNA topoisomerase CLFO_RS14745 PF01751 Toprim domain CLFO_RS14750 PF00005 ABC transporter CLFO_RS14750 PF12848 ABC transporter CLFO_RS14755 PF00005 ABC transporter CLFO_RS14755 PF12848 ABC transporter CLFO_RS14755 PF16326 ABC transporter C-terminal domain CLFO_RS14760 PF00271 Helicase conserved C-terminal domain CLFO_RS14760 PF00270 DEAD/DEAH box helicase CLFO_RS14780 PF00072 Response regulator receiver domain CLFO_RS14780 PF01584 CheW-like domain CLFO_RS14785 PF02743 Cache domain CLFO_RS14785 PF00672 HAMP domain CLFO_RS14785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS14790 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS14800 PF02390 Putative methyltransferase CLFO_RS14815 PF02310 B12 binding domain CLFO_RS14815 PF02607 B12 binding domain CLFO_RS14825 PF18665 Tetracyclin repressor-like, C-terminal domain CLFO_RS14825 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS14845 PF00005 ABC transporter CLFO_RS14845 PF00664 ABC transporter transmembrane region CLFO_RS14890 PF02548 Ketopantoate hydroxymethyltransferase CLFO_RS14895 PF02569 Pantoate-beta-alanine ligase CLFO_RS14900 PF02261 Aspartate decarboxylase CLFO_RS14910 PF16363 GDP-mannose 4,6 dehydratase CLFO_RS14915 PF02678 Pirin CLFO_RS14915 PF05726 Pirin C-terminal cupin domain CLFO_RS14920 PF00701 Dihydrodipicolinate synthetase family CLFO_RS14925 PF00920 Dehydratase family CLFO_RS14930 PF02447 GntP family permease CLFO_RS14935 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS14935 PF07729 FCD domain CLFO_RS14945 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLFO_RS14955 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS14960 PF09383 NIL domain CLFO_RS14960 PF00005 ABC transporter CLFO_RS14965 PF07739 TipAS antibiotic-recognition domain CLFO_RS14965 PF13411 MerR HTH family regulatory protein CLFO_RS14970 PF00005 ABC transporter CLFO_RS14975 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS14985 PF00842 Alanine racemase, C-terminal domain CLFO_RS14985 PF01757 Acyltransferase family CLFO_RS14985 PF01168 Alanine racemase, N-terminal domain CLFO_RS14990 PF02557 D-alanyl-D-alanine carboxypeptidase CLFO_RS14995 PF07478 D-ala D-ala ligase C-terminus CLFO_RS14995 PF01820 D-ala D-ala ligase N-terminus CLFO_RS15000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS15000 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS15005 PF00072 Response regulator receiver domain CLFO_RS15005 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS15015 PF13411 MerR HTH family regulatory protein CLFO_RS15015 PF07739 TipAS antibiotic-recognition domain CLFO_RS15025 PF00005 ABC transporter CLFO_RS15030 PF13977 BetI-type transcriptional repressor, C-terminal CLFO_RS15030 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS15035 PF00005 ABC transporter CLFO_RS15040 PF02687 FtsX-like permease family CLFO_RS15040 PF12704 MacB-like periplasmic core domain CLFO_RS15045 PF00672 HAMP domain CLFO_RS15045 PF13426 PAS domain CLFO_RS15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS15045 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS15050 PF00072 Response regulator receiver domain CLFO_RS15050 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS15060 PF03459 TOBE domain CLFO_RS15060 PF17912 MalK OB fold domain CLFO_RS15060 PF00005 ABC transporter CLFO_RS15075 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15080 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15100 PF09335 SNARE associated Golgi protein CLFO_RS15125 PF00005 ABC transporter CLFO_RS15130 PF06594 Haemolysin-type calcium binding protein related domain CLFO_RS15130 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CLFO_RS15135 PF00248 Aldo/keto reductase family CLFO_RS15140 PF12848 ABC transporter CLFO_RS15140 PF00005 ABC transporter CLFO_RS15140 PF16326 ABC transporter C-terminal domain CLFO_RS15145 PF01814 Hemerythrin HHE cation binding domain CLFO_RS15145 PF04405 Domain of Unknown function (DUF542) CLFO_RS15150 PF00258 Flavodoxin CLFO_RS15150 PF00753 Metallo-beta-lactamase superfamily CLFO_RS15155 PF00027 Cyclic nucleotide-binding domain CLFO_RS15155 PF13545 Crp-like helix-turn-helix domain CLFO_RS15160 PF00890 FAD binding domain CLFO_RS15160 PF04205 FMN-binding domain CLFO_RS15165 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS15170 PF03845 Spore germination protein CLFO_RS15185 PF01571 Aminomethyltransferase folate-binding domain CLFO_RS15185 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLFO_RS15190 PF00258 Flavodoxin CLFO_RS15190 PF00753 Metallo-beta-lactamase superfamily CLFO_RS15190 PF00301 Rubredoxin CLFO_RS15195 PF00072 Response regulator receiver domain CLFO_RS15195 PF00196 Bacterial regulatory proteins, luxR family CLFO_RS15200 PF07730 Histidine kinase CLFO_RS15215 PF00005 ABC transporter CLFO_RS15220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLFO_RS15220 PF16582 Middle domain of thiamine pyrophosphate CLFO_RS15220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS15230 PF02954 Bacterial regulatory protein, Fis family CLFO_RS15230 PF00989 PAS fold CLFO_RS15230 PF00158 Sigma-54 interaction domain CLFO_RS15235 PF00108 Thiolase, N-terminal domain CLFO_RS15235 PF02803 Thiolase, C-terminal domain CLFO_RS15250 PF01144 Coenzyme A transferase CLFO_RS15260 PF01810 LysE type translocator CLFO_RS15265 PF01037 Lrp/AsnC ligand binding domain CLFO_RS15270 PF06133 Control of competence regulator ComK, YlbF/YmcA CLFO_RS15285 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLFO_RS15290 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLFO_RS15305 PF00005 ABC transporter CLFO_RS15315 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CLFO_RS15335 PF00266 Aminotransferase class-V CLFO_RS15345 PF01554 MatE CLFO_RS15360 PF00753 Metallo-beta-lactamase superfamily CLFO_RS15380 PF16736 Single Cache-like CLFO_RS15380 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS15380 PF00989 PAS fold CLFO_RS15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS15385 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS15385 PF00072 Response regulator receiver domain CLFO_RS15390 PF00877 NlpC/P60 family CLFO_RS15395 PF05908 Poly-gamma-glutamate hydrolase CLFO_RS15400 PF05908 Poly-gamma-glutamate hydrolase CLFO_RS15410 PF14102 Capsule biosynthesis CapC CLFO_RS15415 PF08245 Mur ligase middle domain CLFO_RS15425 PF00872 Transposase, Mutator family CLFO_RS15430 PF05958 tRNA (Uracil-5-)-methyltransferase CLFO_RS15445 PF01066 CDP-alcohol phosphatidyltransferase CLFO_RS15450 PF01116 Fructose-bisphosphate aldolase class-II CLFO_RS15460 PF04607 Region found in RelA / SpoT proteins CLFO_RS15470 PF04055 Radical SAM superfamily CLFO_RS15470 PF16199 Radical_SAM C-terminal domain CLFO_RS15480 PF01476 LysM domain CLFO_RS15480 PF00877 NlpC/P60 family CLFO_RS15485 PF02652 L-lactate permease CLFO_RS15490 PF09861 Lactate racemase N-terminal domain CLFO_RS15495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLFO_RS15510 PF13726 Na+-H+ antiporter family CLFO_RS15510 PF03553 Na+/H+ antiporter family CLFO_RS15515 PF16658 Class II release factor RF3, C-terminal domain CLFO_RS15515 PF03144 Elongation factor Tu domain 2 CLFO_RS15515 PF00009 Elongation factor Tu GTP binding domain CLFO_RS15520 PF00390 Malic enzyme, N-terminal domain CLFO_RS15520 PF03949 Malic enzyme, NAD binding domain CLFO_RS15530 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS15530 PF00563 EAL domain CLFO_RS15530 PF03707 Bacterial signalling protein N terminal repeat CLFO_RS15545 PF09856 Predicted transcriptional regulator (DUF2083) CLFO_RS15545 PF06114 IrrE N-terminal-like domain CLFO_RS15545 PF01381 Helix-turn-helix CLFO_RS15550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLFO_RS15565 PF04293 SpoVR like protein CLFO_RS15570 PF04285 Protein of unknown function (DUF444) CLFO_RS15575 PF08298 PrkA AAA domain CLFO_RS15575 PF06798 PrkA serine protein kinase C-terminal domain CLFO_RS15580 PF17202 Single cache domain 3 CLFO_RS15580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS15580 PF00672 HAMP domain CLFO_RS15585 PF01584 CheW-like domain CLFO_RS15590 PF00672 HAMP domain CLFO_RS15590 PF02743 Cache domain CLFO_RS15590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS15595 PF13509 S1 domain CLFO_RS15595 PF17783 CvfB-like winged helix domain CLFO_RS15600 PF00873 AcrB/AcrD/AcrF family CLFO_RS15605 PF00529 HlyD membrane-fusion protein of T1SS CLFO_RS15605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLFO_RS15610 PF00005 ABC transporter CLFO_RS15610 PF00664 ABC transporter transmembrane region CLFO_RS15615 PF00664 ABC transporter transmembrane region CLFO_RS15615 PF00005 ABC transporter CLFO_RS15620 PF00072 Response regulator receiver domain CLFO_RS15620 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS15625 PF00672 HAMP domain CLFO_RS15625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS15625 PF13426 PAS domain CLFO_RS15625 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS15630 PF09582 Iron only nitrogenase protein AnfO (AnfO_nitrog) CLFO_RS15640 PF00072 Response regulator receiver domain CLFO_RS15645 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS15645 PF00072 Response regulator receiver domain CLFO_RS15645 PF00672 HAMP domain CLFO_RS15645 PF01627 Hpt domain CLFO_RS15645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS15645 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLFO_RS15655 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLFO_RS15655 PF01276 Orn/Lys/Arg decarboxylase, major domain CLFO_RS15660 PF00672 HAMP domain CLFO_RS15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS15660 PF00072 Response regulator receiver domain CLFO_RS15660 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS15660 PF01627 Hpt domain CLFO_RS15660 PF17149 Periplasmic sensor domain found in signal transduction proteins CLFO_RS15680 PF00005 ABC transporter CLFO_RS15685 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS15695 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS15695 PF13291 ACT domain CLFO_RS15710 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS15725 PF01381 Helix-turn-helix CLFO_RS15735 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15740 PF00005 ABC transporter CLFO_RS15800 PF02348 Cytidylyltransferase CLFO_RS15810 PF00483 Nucleotidyl transferase CLFO_RS15815 PF12464 Maltose acetyltransferase CLFO_RS15815 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS15820 PF03102 NeuB family CLFO_RS15820 PF08666 SAF domain CLFO_RS15825 PF02350 UDP-N-acetylglucosamine 2-epimerase CLFO_RS15830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLFO_RS15835 PF01370 NAD dependent epimerase/dehydratase family CLFO_RS15845 PF00005 ABC transporter CLFO_RS15845 PF00664 ABC transporter transmembrane region CLFO_RS15850 PF00664 ABC transporter transmembrane region CLFO_RS15850 PF00005 ABC transporter CLFO_RS15855 PF12697 Alpha/beta hydrolase family CLFO_RS15855 PF08241 Methyltransferase domain CLFO_RS15870 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS15870 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15875 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS15885 PF08241 Methyltransferase domain CLFO_RS15895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS15900 PF00005 ABC transporter CLFO_RS15900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS15905 PF00005 ABC transporter CLFO_RS15905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS15910 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15910 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS15915 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15925 PF00005 ABC transporter CLFO_RS15925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS15930 PF00005 ABC transporter CLFO_RS15930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS15935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS15940 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS15940 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15945 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS15950 PF05161 MOFRL family CLFO_RS15950 PF13660 Domain of unknown function (DUF4147) CLFO_RS15955 PF00294 pfkB family carbohydrate kinase CLFO_RS15960 PF00107 Zinc-binding dehydrogenase CLFO_RS15960 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS15965 PF00356 Bacterial regulatory proteins, lacI family CLFO_RS15970 PF05949 Bacterial protein of unknown function (DUF881) CLFO_RS15980 PF06508 Queuosine biosynthesis protein QueC CLFO_RS15985 PF04055 Radical SAM superfamily CLFO_RS15995 PF01554 MatE CLFO_RS16000 PF00664 ABC transporter transmembrane region CLFO_RS16000 PF00005 ABC transporter CLFO_RS16010 PF12833 Helix-turn-helix domain CLFO_RS16010 PF02311 AraC-like ligand binding domain CLFO_RS16015 PF01242 6-pyruvoyl tetrahydropterin synthase CLFO_RS16020 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLFO_RS16045 PF00005 ABC transporter CLFO_RS16055 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLFO_RS16065 PF00403 Heavy-metal-associated domain CLFO_RS16095 PF00689 Cation transporting ATPase, C-terminus CLFO_RS16095 PF00690 Cation transporter/ATPase, N-terminus CLFO_RS16100 PF00155 Aminotransferase class I and II CLFO_RS16105 PF18698 Histidine kinase sensor domain CLFO_RS16105 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS16105 PF00989 PAS fold CLFO_RS16105 PF00672 HAMP domain CLFO_RS16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS16120 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS16120 PF00107 Zinc-binding dehydrogenase CLFO_RS16125 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS16125 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS16135 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS16140 PF00356 Bacterial regulatory proteins, lacI family CLFO_RS16145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLFO_RS16155 PF02540 NAD synthase CLFO_RS16155 PF00795 Carbon-nitrogen hydrolase CLFO_RS16165 PF00005 ABC transporter CLFO_RS16165 PF00664 ABC transporter transmembrane region CLFO_RS16170 PF00664 ABC transporter transmembrane region CLFO_RS16170 PF00005 ABC transporter CLFO_RS16180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLFO_RS16180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLFO_RS16185 PF01061 ABC-2 type transporter CLFO_RS16190 PF00005 ABC transporter CLFO_RS16195 PF10502 Signal peptidase, peptidase S26 CLFO_RS16200 PF00488 MutS domain V CLFO_RS16200 PF01713 Smr domain CLFO_RS16225 PF00082 Subtilase family CLFO_RS16235 PF00082 Subtilase family CLFO_RS16245 PF01609 Transposase DDE domain CLFO_RS16285 PF00005 ABC transporter CLFO_RS16285 PF12704 MacB-like periplasmic core domain CLFO_RS16285 PF02687 FtsX-like permease family CLFO_RS16290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLFO_RS16290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLFO_RS16300 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CLFO_RS16300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS16310 PF10609 NUBPL iron-transfer P-loop NTPase CLFO_RS16330 PF02001 Protein of unknown function DUF134 CLFO_RS16340 PF01487 Type I 3-dehydroquinase CLFO_RS16350 PF02607 B12 binding domain CLFO_RS16350 PF02310 B12 binding domain CLFO_RS16360 PF00578 AhpC/TSA family CLFO_RS16365 PF11799 impB/mucB/samB family C-terminal domain CLFO_RS16365 PF00817 impB/mucB/samB family CLFO_RS16370 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CLFO_RS16385 PF01098 Cell cycle protein CLFO_RS16390 PF03551 Transcriptional regulator PadR-like family CLFO_RS16395 PF13307 Helicase C-terminal domain CLFO_RS16415 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS16415 PF00155 Aminotransferase class I and II CLFO_RS16420 PF00291 Pyridoxal-phosphate dependent enzyme CLFO_RS16440 PF00892 EamA-like transporter family CLFO_RS16445 PF10100 Staphylopine dehydrogenase CLFO_RS16460 PF00005 ABC transporter CLFO_RS16465 PF00005 ABC transporter CLFO_RS16470 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS16470 PF12911 N-terminal TM domain of oligopeptide transport permease C CLFO_RS16475 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS16480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS16485 PF00936 BMC domain CLFO_RS16490 PF06130 Phosphate propanoyltransferase CLFO_RS16495 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS16495 PF00171 Aldehyde dehydrogenase family CLFO_RS16500 PF00936 BMC domain CLFO_RS16510 PF00936 BMC domain CLFO_RS16515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS16515 PF13375 RnfC Barrel sandwich hybrid domain CLFO_RS16515 PF13237 4Fe-4S dicluster domain CLFO_RS16515 PF10531 SLBB domain CLFO_RS16520 PF03319 Ethanolamine utilisation protein EutN/carboxysome CLFO_RS16540 PF13187 4Fe-4S dicluster domain CLFO_RS16540 PF04055 Radical SAM superfamily CLFO_RS16545 PF01695 IstB-like ATP binding protein CLFO_RS16555 PF02901 Pyruvate formate lyase-like CLFO_RS16555 PF01228 Glycine radical CLFO_RS16560 PF00936 BMC domain CLFO_RS16565 PF00936 BMC domain CLFO_RS16585 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS16590 PF06580 Histidine kinase CLFO_RS16590 PF07694 5TMR of 5TMR-LYT CLFO_RS16595 PF12833 Helix-turn-helix domain CLFO_RS16595 PF10114 Sensory domain found in PocR CLFO_RS16600 PF01235 Sodium:alanine symporter family CLFO_RS16610 PF07883 Cupin domain CLFO_RS16630 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLFO_RS16630 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLFO_RS16640 PF01799 [2Fe-2S] binding domain CLFO_RS16640 PF00111 2Fe-2S iron-sulfur cluster binding domain CLFO_RS16650 PF01522 Polysaccharide deacetylase CLFO_RS16675 PF00456 Transketolase, thiamine diphosphate binding domain CLFO_RS16675 PF02780 Transketolase, C-terminal domain CLFO_RS16675 PF02779 Transketolase, pyrimidine binding domain CLFO_RS16685 PF00365 Phosphofructokinase CLFO_RS16690 PF02734 DAK2 domain CLFO_RS16695 PF02733 Dak1 domain CLFO_RS16700 PF02502 Ribose/Galactose Isomerase CLFO_RS16705 PF08240 Alcohol dehydrogenase GroES-like domain CLFO_RS16705 PF00107 Zinc-binding dehydrogenase CLFO_RS16710 PF01547 Bacterial extracellular solute-binding protein CLFO_RS16715 PF00072 Response regulator receiver domain CLFO_RS16715 PF12833 Helix-turn-helix domain CLFO_RS16720 PF00672 HAMP domain CLFO_RS16720 PF06580 Histidine kinase CLFO_RS16720 PF02743 Cache domain CLFO_RS16720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS16735 PF00106 short chain dehydrogenase CLFO_RS16740 PF05067 Manganese containing catalase CLFO_RS16750 PF11553 Protein of unknown function (DUF3231) CLFO_RS16770 PF12833 Helix-turn-helix domain CLFO_RS16770 PF06445 GyrI-like small molecule binding domain CLFO_RS16775 PF01636 Phosphotransferase enzyme family CLFO_RS16810 PF00391 PEP-utilising enzyme, mobile domain CLFO_RS16810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLFO_RS16825 PF16736 Single Cache-like CLFO_RS16825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS16825 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS16825 PF00989 PAS fold CLFO_RS16830 PF00072 Response regulator receiver domain CLFO_RS16830 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS16835 PF01522 Polysaccharide deacetylase CLFO_RS16850 PF10415 Fumarase C C-terminus CLFO_RS16850 PF00206 Lyase CLFO_RS16865 PF00005 ABC transporter CLFO_RS16870 PF01032 FecCD transport family CLFO_RS16875 PF01032 FecCD transport family CLFO_RS16880 PF01497 Periplasmic binding protein CLFO_RS16885 PF12833 Helix-turn-helix domain CLFO_RS16885 PF02311 AraC-like ligand binding domain CLFO_RS16935 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS16935 PF13007 Transposase C of IS166 homeodomain CLFO_RS16935 PF03050 Transposase IS66 family CLFO_RS16935 PF13817 IS66 C-terminal element CLFO_RS16960 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS16960 PF13305 Tetracyclin repressor-like, C-terminal domain CLFO_RS16975 PF01695 IstB-like ATP binding protein CLFO_RS16990 PF02796 Helix-turn-helix domain of resolvase CLFO_RS16990 PF00239 Resolvase, N terminal domain CLFO_RS17045 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS17095 PF13817 IS66 C-terminal element CLFO_RS17095 PF03050 Transposase IS66 family CLFO_RS17095 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS17095 PF13007 Transposase C of IS166 homeodomain CLFO_RS17115 PF18766 SWI2/SNF2 ATPase CLFO_RS17115 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLFO_RS17115 PF12008 Type I restriction and modification enzyme - subunit R C terminal CLFO_RS17125 PF02384 N-6 DNA Methylase CLFO_RS17125 PF12161 HsdM N-terminal domain CLFO_RS17165 PF01966 HD domain CLFO_RS17220 PF01381 Helix-turn-helix CLFO_RS17220 PF07883 Cupin domain CLFO_RS17230 PF00589 Phage integrase family CLFO_RS17230 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS17255 PF03432 Relaxase/Mobilisation nuclease domain CLFO_RS17265 PF09565 NgoFVII restriction endonuclease CLFO_RS17270 PF00145 C-5 cytosine-specific DNA methylase CLFO_RS17280 PF07804 HipA-like C-terminal domain CLFO_RS17310 PF18818 Metallopeptidase superfamily domain CLFO_RS17310 PF08401 Domain of unknown function (DUF1738) CLFO_RS17330 PF02368 Bacterial Ig-like domain (group 2) CLFO_RS17335 PF01751 Toprim domain CLFO_RS17335 PF01131 DNA topoisomerase CLFO_RS17365 PF01476 LysM domain CLFO_RS17365 PF08525 Opacity-associated protein A N-terminal motif CLFO_RS17365 PF01551 Peptidase family M23 CLFO_RS17410 PF05958 tRNA (Uracil-5-)-methyltransferase CLFO_RS17410 PF01938 TRAM domain CLFO_RS17420 PF04186 FxsA cytoplasmic membrane protein CLFO_RS17425 PF03061 Thioesterase superfamily CLFO_RS17430 PF00391 PEP-utilising enzyme, mobile domain CLFO_RS17430 PF00224 Pyruvate kinase, barrel domain CLFO_RS17430 PF02887 Pyruvate kinase, alpha/beta domain CLFO_RS17435 PF00365 Phosphofructokinase CLFO_RS17445 PF14579 Helix-hairpin-helix motif CLFO_RS17445 PF02811 PHP domain CLFO_RS17445 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLFO_RS17445 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLFO_RS17460 PF01348 Type II intron maturase CLFO_RS17460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLFO_RS17465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLFO_RS17465 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLFO_RS17465 PF14579 Helix-hairpin-helix motif CLFO_RS17465 PF02811 PHP domain CLFO_RS17465 PF01336 OB-fold nucleic acid binding domain CLFO_RS17475 PF07690 Major Facilitator Superfamily CLFO_RS17485 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS17485 PF07702 UTRA domain CLFO_RS17490 PF02607 B12 binding domain CLFO_RS17490 PF02310 B12 binding domain CLFO_RS17495 PF02607 B12 binding domain CLFO_RS17495 PF02310 B12 binding domain CLFO_RS17505 PF00474 Sodium:solute symporter family CLFO_RS17520 PF02310 B12 binding domain CLFO_RS17520 PF02607 B12 binding domain CLFO_RS17530 PF02310 B12 binding domain CLFO_RS17530 PF02607 B12 binding domain CLFO_RS17545 PF04961 Formiminotransferase-cyclodeaminase CLFO_RS17550 PF01979 Amidohydrolase family CLFO_RS17555 PF07837 Formiminotransferase domain, N-terminal subdomain CLFO_RS17555 PF02971 Formiminotransferase domain CLFO_RS17560 PF01175 Urocanase Rossmann-like domain CLFO_RS17560 PF17392 Urocanase C-terminal domain CLFO_RS17560 PF17391 Urocanase N-terminal domain CLFO_RS17565 PF01966 HD domain CLFO_RS17565 PF11871 Domain of unknown function (DUF3391) CLFO_RS17570 PF10298 WhiA N-terminal LAGLIDADG-like domain CLFO_RS17570 PF14527 WhiA LAGLIDADG-like domain CLFO_RS17570 PF02650 WhiA C-terminal HTH domain CLFO_RS17585 PF01933 Uncharacterised protein family UPF0052 CLFO_RS17590 PF03668 P-loop ATPase protein family CLFO_RS17595 PF01565 FAD binding domain CLFO_RS17595 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLFO_RS17610 PF04055 Radical SAM superfamily CLFO_RS17610 PF06463 Molybdenum Cofactor Synthesis C CLFO_RS17615 PF02634 FdhD/NarQ family CLFO_RS17630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS17630 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS17630 PF00037 4Fe-4S binding domain CLFO_RS17645 PF02906 Iron only hydrogenase large subunit, C-terminal domain CLFO_RS17645 PF02256 Iron hydrogenase small subunit CLFO_RS17645 PF00037 4Fe-4S binding domain CLFO_RS17645 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLFO_RS17650 PF00037 4Fe-4S binding domain CLFO_RS17650 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS17650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLFO_RS17665 PF02603 HPr Serine kinase N terminus CLFO_RS17665 PF07475 HPr Serine kinase C-terminal domain CLFO_RS17670 PF12826 Helix-hairpin-helix motif CLFO_RS17670 PF02151 UvrB/uvrC motif CLFO_RS17670 PF08459 UvrC Helix-hairpin-helix N-terminal CLFO_RS17670 PF01541 GIY-YIG catalytic domain CLFO_RS17680 PF17760 UvrA interaction domain CLFO_RS17680 PF17755 UvrA DNA-binding domain CLFO_RS17685 PF12344 Ultra-violet resistance protein B CLFO_RS17685 PF02151 UvrB/uvrC motif CLFO_RS17685 PF04851 Type III restriction enzyme, res subunit CLFO_RS17685 PF17757 UvrB interaction domain CLFO_RS17685 PF00271 Helicase conserved C-terminal domain CLFO_RS17690 PF13180 PDZ domain CLFO_RS17690 PF03572 Peptidase family S41 CLFO_RS17695 PF01551 Peptidase family M23 CLFO_RS17695 PF04225 Opacity-associated protein A LysM-like domain CLFO_RS17700 PF02687 FtsX-like permease family CLFO_RS17700 PF18075 FtsX extracellular domain CLFO_RS17705 PF00005 ABC transporter CLFO_RS17710 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLFO_RS17715 PF00158 Sigma-54 interaction domain CLFO_RS17715 PF00072 Response regulator receiver domain CLFO_RS17715 PF02954 Bacterial regulatory protein, Fis family CLFO_RS17720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS17720 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS17720 PF00989 PAS fold CLFO_RS17720 PF08447 PAS fold CLFO_RS17735 PF00403 Heavy-metal-associated domain CLFO_RS17785 PF00005 ABC transporter CLFO_RS17790 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLFO_RS17790 PF00005 ABC transporter CLFO_RS17795 PF11862 Domain of unknown function (DUF3382) CLFO_RS17795 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS17800 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS17810 PF05362 Lon protease (S16) C-terminal proteolytic domain CLFO_RS17810 PF13654 AAA domain CLFO_RS17815 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLFO_RS17815 PF01476 LysM domain CLFO_RS17820 PF00571 CBS domain CLFO_RS17820 PF00005 ABC transporter CLFO_RS17825 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS17845 PF02779 Transketolase, pyrimidine binding domain CLFO_RS17845 PF02780 Transketolase, C-terminal domain CLFO_RS17850 PF00456 Transketolase, thiamine diphosphate binding domain CLFO_RS17855 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLFO_RS17855 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLFO_RS17860 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLFO_RS17875 PF01757 Acyltransferase family CLFO_RS17885 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLFO_RS17895 PF01168 Alanine racemase, N-terminal domain CLFO_RS17895 PF00842 Alanine racemase, C-terminal domain CLFO_RS17905 PF01648 4'-phosphopantetheinyl transferase superfamily CLFO_RS17920 PF00361 Proton-conducting membrane transporter CLFO_RS17925 PF00361 Proton-conducting membrane transporter CLFO_RS17930 PF00361 Proton-conducting membrane transporter CLFO_RS17955 PF03334 Na+/H+ antiporter subunit CLFO_RS17960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CLFO_RS17965 PF01899 Na+/H+ ion antiporter subunit CLFO_RS17980 PF00571 CBS domain CLFO_RS17980 PF01743 Poly A polymerase head domain CLFO_RS17985 PF13690 Chemotaxis phosphatase CheX CLFO_RS17990 PF00156 Phosphoribosyl transferase domain CLFO_RS17995 PF13361 UvrD-like helicase C-terminal domain CLFO_RS17995 PF00580 UvrD/REP helicase N-terminal domain CLFO_RS17995 PF12705 PD-(D/E)XK nuclease superfamily CLFO_RS18000 PF12705 PD-(D/E)XK nuclease superfamily CLFO_RS18015 PF02915 Rubrerythrin CLFO_RS18020 PF02666 Phosphatidylserine decarboxylase CLFO_RS18025 PF00156 Phosphoribosyl transferase domain CLFO_RS18030 PF01180 Dihydroorotate dehydrogenase CLFO_RS18035 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLFO_RS18040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLFO_RS18040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLFO_RS18040 PF02142 MGS-like domain CLFO_RS18045 PF00117 Glutamine amidotransferase class-I CLFO_RS18045 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLFO_RS18050 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLFO_RS18055 PF01979 Amidohydrolase family CLFO_RS18065 PF00180 Isocitrate/isopropylmalate dehydrogenase CLFO_RS18070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLFO_RS18070 PF01842 ACT domain CLFO_RS18070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLFO_RS18095 PF17805 AsnC-like ligand binding domain CLFO_RS18100 PF17805 AsnC-like ligand binding domain CLFO_RS18100 PF13404 AsnC-type helix-turn-helix domain CLFO_RS18105 PF04055 Radical SAM superfamily CLFO_RS18105 PF13186 Iron-sulfur cluster-binding domain CLFO_RS18110 PF04055 Radical SAM superfamily CLFO_RS18110 PF13186 Iron-sulfur cluster-binding domain CLFO_RS18125 PF01522 Polysaccharide deacetylase CLFO_RS18130 PF01739 CheR methyltransferase, SAM binding domain CLFO_RS18130 PF03705 CheR methyltransferase, all-alpha domain CLFO_RS18135 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS18135 PF00672 HAMP domain CLFO_RS18135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18135 PF01627 Hpt domain CLFO_RS18135 PF00072 Response regulator receiver domain CLFO_RS18135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLFO_RS18140 PF00989 PAS fold CLFO_RS18140 PF00672 HAMP domain CLFO_RS18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18140 PF18698 Histidine kinase sensor domain CLFO_RS18140 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS18150 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLFO_RS18150 PF17203 Single cache domain 3 CLFO_RS18150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18150 PF00989 PAS fold CLFO_RS18155 PF00072 Response regulator receiver domain CLFO_RS18155 PF04703 FaeA-like protein CLFO_RS18160 PF00890 FAD binding domain CLFO_RS18160 PF14537 Cytochrome c3 CLFO_RS18165 PF13180 PDZ domain CLFO_RS18175 PF02915 Rubrerythrin CLFO_RS18180 PF02903 Alpha amylase, N-terminal ig-like domain CLFO_RS18180 PF00128 Alpha amylase, catalytic domain CLFO_RS18185 PF00343 Carbohydrate phosphorylase CLFO_RS18190 PF00534 Glycosyl transferases group 1 CLFO_RS18190 PF08323 Starch synthase catalytic domain CLFO_RS18195 PF00483 Nucleotidyl transferase CLFO_RS18200 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS18200 PF00483 Nucleotidyl transferase CLFO_RS18205 PF02806 Alpha amylase, C-terminal all-beta domain CLFO_RS18205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLFO_RS18205 PF00128 Alpha amylase, catalytic domain CLFO_RS18215 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS18220 PF05504 Spore germination B3/ GerAC like, C-terminal CLFO_RS18230 PF03845 Spore germination protein CLFO_RS18235 PF02446 4-alpha-glucanotransferase CLFO_RS18240 PF08281 Sigma-70, region 4 CLFO_RS18240 PF04542 Sigma-70 region 2 CLFO_RS18265 PF00730 HhH-GPD superfamily base excision DNA repair protein CLFO_RS18265 PF14815 NUDIX domain CLFO_RS18265 PF00633 Helix-hairpin-helix motif CLFO_RS18270 PF03167 Uracil DNA glycosylase superfamily CLFO_RS18275 PF02834 LigT like Phosphoesterase CLFO_RS18290 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain CLFO_RS18290 PF12791 Anti-sigma factor N-terminus CLFO_RS18295 PF04542 Sigma-70 region 2 CLFO_RS18300 PF00999 Sodium/hydrogen exchanger family CLFO_RS18310 PF02743 Cache domain CLFO_RS18310 PF00672 HAMP domain CLFO_RS18310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS18325 PF00999 Sodium/hydrogen exchanger family CLFO_RS18350 PF04073 Aminoacyl-tRNA editing domain CLFO_RS18355 PF00301 Rubredoxin CLFO_RS18355 PF00258 Flavodoxin CLFO_RS18355 PF00753 Metallo-beta-lactamase superfamily CLFO_RS18360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS18360 PF00005 ABC transporter CLFO_RS18365 PF00005 ABC transporter CLFO_RS18365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLFO_RS18370 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS18375 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS18380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLFO_RS18385 PF01554 MatE CLFO_RS18395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18400 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS18400 PF00072 Response regulator receiver domain CLFO_RS18405 PF03616 Sodium/glutamate symporter CLFO_RS18410 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CLFO_RS18415 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CLFO_RS18420 PF08218 Citrate lyase ligase C-terminal domain CLFO_RS18425 PF04223 Citrate lyase, alpha subunit (CitF) CLFO_RS18430 PF03328 HpcH/HpaI aldolase/citrate lyase family CLFO_RS18435 PF06857 Malonate decarboxylase delta subunit (MdcD) CLFO_RS18440 PF05683 Fumarase C-terminus CLFO_RS18440 PF05681 Fumarate hydratase (Fumerase) CLFO_RS18450 PF05034 Methylaspartate ammonia-lyase N-terminus CLFO_RS18450 PF07476 Methylaspartate ammonia-lyase C-terminus CLFO_RS18455 PF06368 Methylaspartate mutase E chain (MutE) CLFO_RS18460 PF13941 MutL protein CLFO_RS18465 PF02310 B12 binding domain CLFO_RS18480 PF02310 B12 binding domain CLFO_RS18480 PF02607 B12 binding domain CLFO_RS18485 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLFO_RS18485 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLFO_RS18495 PF00809 Pterin binding enzyme CLFO_RS18500 PF02607 B12 binding domain CLFO_RS18500 PF02310 B12 binding domain CLFO_RS18505 PF12833 Helix-turn-helix domain CLFO_RS18505 PF10114 Sensory domain found in PocR CLFO_RS18510 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS18510 PF00072 Response regulator receiver domain CLFO_RS18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18515 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS18515 PF00072 Response regulator receiver domain CLFO_RS18515 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLFO_RS18515 PF00672 HAMP domain CLFO_RS18515 PF01627 Hpt domain CLFO_RS18520 PF00072 Response regulator receiver domain CLFO_RS18520 PF01339 CheB methylesterase CLFO_RS18525 PF03705 CheR methyltransferase, all-alpha domain CLFO_RS18525 PF01739 CheR methyltransferase, SAM binding domain CLFO_RS18530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS18530 PF12729 Four helix bundle sensory module for signal transduction CLFO_RS18530 PF00672 HAMP domain CLFO_RS18535 PF01584 CheW-like domain CLFO_RS18540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18540 PF07194 P2 response regulator binding domain CLFO_RS18540 PF01627 Hpt domain CLFO_RS18540 PF01584 CheW-like domain CLFO_RS18540 PF02895 Signal transducing histidine kinase, homodimeric domain CLFO_RS18545 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS18550 PF00085 Thioredoxin CLFO_RS18560 PF00403 Heavy-metal-associated domain CLFO_RS18570 PF00672 HAMP domain CLFO_RS18570 PF02743 Cache domain CLFO_RS18570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS18580 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS18585 PF02653 Branched-chain amino acid transport system / permease component CLFO_RS18590 PF00005 ABC transporter CLFO_RS18595 PF02608 ABC transporter substrate-binding protein PnrA-like CLFO_RS18600 PF00266 Aminotransferase class-V CLFO_RS18605 PF00155 Aminotransferase class I and II CLFO_RS18610 PF02548 Ketopantoate hydroxymethyltransferase CLFO_RS18615 PF02548 Ketopantoate hydroxymethyltransferase CLFO_RS18620 PF09339 IclR helix-turn-helix domain CLFO_RS18620 PF01614 Bacterial transcriptional regulator CLFO_RS18625 PF00920 Dehydratase family CLFO_RS18630 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS18630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS18640 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS18655 PF01022 Bacterial regulatory protein, arsR family CLFO_RS18660 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS18665 PF03551 Transcriptional regulator PadR-like family CLFO_RS18670 PF00005 ABC transporter CLFO_RS18670 PF08402 TOBE domain CLFO_RS18675 PF03649 Uncharacterised protein family (UPF0014) CLFO_RS18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS18680 PF07694 5TMR of 5TMR-LYT CLFO_RS18680 PF06580 Histidine kinase CLFO_RS18685 PF04397 LytTr DNA-binding domain CLFO_RS18685 PF00072 Response regulator receiver domain CLFO_RS18690 PF02554 Carbon starvation protein CstA CLFO_RS18695 PF00149 Calcineurin-like phosphoesterase CLFO_RS18700 PF14602 Hexapeptide repeat of succinyl-transferase CLFO_RS18700 PF12464 Maltose acetyltransferase CLFO_RS18710 PF13007 Transposase C of IS166 homeodomain CLFO_RS18710 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS18710 PF13817 IS66 C-terminal element CLFO_RS18710 PF03050 Transposase IS66 family CLFO_RS18750 PF06527 TniQ CLFO_RS18750 PF15978 Tn7-like transposition protein D CLFO_RS18755 PF13401 AAA domain CLFO_RS18755 PF11426 Tn7 transposition regulator TnsC CLFO_RS18760 PF00665 Integrase core domain CLFO_RS18765 PF08722 TnsA endonuclease N terminal CLFO_RS18765 PF08721 TnsA endonuclease C terminal CLFO_RS18770 PF13007 Transposase C of IS166 homeodomain CLFO_RS18770 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS18770 PF13817 IS66 C-terminal element CLFO_RS18770 PF03050 Transposase IS66 family CLFO_RS18785 PF00665 Integrase core domain CLFO_RS18790 PF08722 TnsA endonuclease N terminal CLFO_RS18790 PF08721 TnsA endonuclease C terminal CLFO_RS18805 PF01555 DNA methylase CLFO_RS18825 PF01380 SIS domain CLFO_RS18830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLFO_RS18830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLFO_RS18830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLFO_RS18830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLFO_RS18835 PF13722 5TM C-terminal transporter carbon starvation CstA CLFO_RS18835 PF02554 Carbon starvation protein CstA CLFO_RS18865 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLFO_RS18865 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLFO_RS18880 PF00871 Acetokinase family CLFO_RS18885 PF01515 Phosphate acetyl/butaryl transferase CLFO_RS18890 PF00871 Acetokinase family CLFO_RS18895 PF00158 Sigma-54 interaction domain CLFO_RS18895 PF02954 Bacterial regulatory protein, Fis family CLFO_RS18895 PF00989 PAS fold CLFO_RS18905 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLFO_RS18915 PF00764 Arginosuccinate synthase CLFO_RS18920 PF00202 Aminotransferase class-III CLFO_RS18925 PF00202 Aminotransferase class-III CLFO_RS19295 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLFO_RS19300 PF00925 GTP cyclohydrolase II CLFO_RS19300 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLFO_RS19305 PF00677 Lumazine binding domain CLFO_RS19310 PF01872 RibD C-terminal domain CLFO_RS19310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLFO_RS19315 PF02659 Putative manganese efflux pump CLFO_RS19340 PF00578 AhpC/TSA family CLFO_RS19345 PF00403 Heavy-metal-associated domain CLFO_RS19350 PF01022 Bacterial regulatory protein, arsR family CLFO_RS19355 PF08141 Small acid-soluble spore protein H family CLFO_RS19360 PF00258 Flavodoxin CLFO_RS19360 PF00753 Metallo-beta-lactamase superfamily CLFO_RS19365 PF01522 Polysaccharide deacetylase CLFO_RS19375 PF04239 Protein of unknown function (DUF421) CLFO_RS19380 PF01022 Bacterial regulatory protein, arsR family CLFO_RS19385 PF01546 Peptidase family M20/M25/M40 CLFO_RS19385 PF07687 Peptidase dimerisation domain CLFO_RS19390 PF02016 LD-carboxypeptidase N-terminal domain CLFO_RS19390 PF17676 LD-carboxypeptidase C-terminal domain CLFO_RS19395 PF07670 Nucleoside recognition CLFO_RS19400 PF07670 Nucleoside recognition CLFO_RS19405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLFO_RS19405 PF13378 Enolase C-terminal domain-like CLFO_RS19410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLFO_RS19410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLFO_RS19415 PF00158 Sigma-54 interaction domain CLFO_RS19415 PF13426 PAS domain CLFO_RS19415 PF02954 Bacterial regulatory protein, Fis family CLFO_RS19420 PF02673 Bacitracin resistance protein BacA CLFO_RS19425 PF13537 Glutamine amidotransferase domain CLFO_RS19425 PF00733 Asparagine synthase CLFO_RS19430 PF00571 CBS domain CLFO_RS19435 PF03734 L,D-transpeptidase catalytic domain CLFO_RS19435 PF01476 LysM domain CLFO_RS19455 PF00072 Response regulator receiver domain CLFO_RS19455 PF13426 PAS domain CLFO_RS19455 PF08448 PAS fold CLFO_RS19455 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS19455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS19460 PF13302 Acetyltransferase (GNAT) domain CLFO_RS19475 PF00704 Glycosyl hydrolases family 18 CLFO_RS19475 PF01476 LysM domain CLFO_RS19480 PF00672 HAMP domain CLFO_RS19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS19480 PF18698 Histidine kinase sensor domain CLFO_RS19480 PF00989 PAS fold CLFO_RS19480 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS19485 PF00440 Bacterial regulatory proteins, tetR family CLFO_RS19490 PF02675 S-adenosylmethionine decarboxylase CLFO_RS19495 PF03063 Prismane/CO dehydrogenase family CLFO_RS19500 PF04748 Divergent polysaccharide deacetylase CLFO_RS19510 PF01520 N-acetylmuramoyl-L-alanine amidase CLFO_RS19525 PF00380 Ribosomal protein S9/S16 CLFO_RS19530 PF00572 Ribosomal protein L13 CLFO_RS19535 PF01416 tRNA pseudouridine synthase CLFO_RS19540 PF02361 Cobalt transport protein CLFO_RS19545 PF00005 ABC transporter CLFO_RS19550 PF00005 ABC transporter CLFO_RS19555 PF01196 Ribosomal protein L17 CLFO_RS19560 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLFO_RS19560 PF01000 RNA polymerase Rpb3/RpoA insert domain CLFO_RS19560 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLFO_RS19565 PF00163 Ribosomal protein S4/S9 N-terminal domain CLFO_RS19565 PF01479 S4 domain CLFO_RS19570 PF00411 Ribosomal protein S11 CLFO_RS19575 PF00416 Ribosomal protein S13/S18 CLFO_RS19580 PF00444 Ribosomal protein L36 CLFO_RS19585 PF01176 Translation initiation factor 1A / IF-1 CLFO_RS19595 PF00557 Metallopeptidase family M24 CLFO_RS19600 PF05191 Adenylate kinase, active site lid CLFO_RS19605 PF00344 SecY translocase CLFO_RS19610 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLFO_RS19615 PF00327 Ribosomal protein L30p/L7e CLFO_RS19620 PF03719 Ribosomal protein S5, C-terminal domain CLFO_RS19620 PF00333 Ribosomal protein S5, N-terminal domain CLFO_RS19625 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLFO_RS19630 PF00347 Ribosomal protein L6 CLFO_RS19635 PF00410 Ribosomal protein S8 CLFO_RS19640 PF00253 Ribosomal protein S14p/S29e CLFO_RS19645 PF00281 Ribosomal protein L5 CLFO_RS19645 PF00673 ribosomal L5P family C-terminus CLFO_RS19650 PF00467 KOW motif CLFO_RS19650 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLFO_RS19655 PF00238 Ribosomal protein L14p/L23e CLFO_RS19660 PF00366 Ribosomal protein S17 CLFO_RS19665 PF00831 Ribosomal L29 protein CLFO_RS19670 PF00252 Ribosomal protein L16p/L10e CLFO_RS19675 PF07650 KH domain CLFO_RS19675 PF00189 Ribosomal protein S3, C-terminal domain CLFO_RS19680 PF00237 Ribosomal protein L22p/L17e CLFO_RS19685 PF00203 Ribosomal protein S19 CLFO_RS19690 PF03947 Ribosomal Proteins L2, C-terminal domain CLFO_RS19690 PF00181 Ribosomal Proteins L2, RNA binding domain CLFO_RS19695 PF00276 Ribosomal protein L23 CLFO_RS19700 PF00573 Ribosomal protein L4/L1 family CLFO_RS19705 PF00297 Ribosomal protein L3 CLFO_RS19710 PF00338 Ribosomal protein S10p/S20e CLFO_RS19715 PF00009 Elongation factor Tu GTP binding domain CLFO_RS19715 PF03144 Elongation factor Tu domain 2 CLFO_RS19715 PF03143 Elongation factor Tu C-terminal domain CLFO_RS19720 PF14492 Elongation Factor G, domain II CLFO_RS19720 PF00679 Elongation factor G C-terminus CLFO_RS19720 PF03764 Elongation factor G, domain IV CLFO_RS19720 PF03144 Elongation factor Tu domain 2 CLFO_RS19720 PF00009 Elongation factor Tu GTP binding domain CLFO_RS19725 PF00177 Ribosomal protein S7p/S5e CLFO_RS19730 PF00164 Ribosomal protein S12/S23 CLFO_RS19735 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLFO_RS19740 PF04983 RNA polymerase Rpb1, domain 3 CLFO_RS19740 PF04997 RNA polymerase Rpb1, domain 1 CLFO_RS19740 PF00623 RNA polymerase Rpb1, domain 2 CLFO_RS19740 PF05000 RNA polymerase Rpb1, domain 4 CLFO_RS19740 PF04998 RNA polymerase Rpb1, domain 5 CLFO_RS19745 PF04561 RNA polymerase Rpb2, domain 2 CLFO_RS19745 PF04565 RNA polymerase Rpb2, domain 3 CLFO_RS19745 PF10385 RNA polymerase beta subunit external 1 domain CLFO_RS19745 PF00562 RNA polymerase Rpb2, domain 6 CLFO_RS19745 PF04560 RNA polymerase Rpb2, domain 7 CLFO_RS19745 PF04563 RNA polymerase beta subunit CLFO_RS19750 PF16320 Ribosomal protein L7/L12 dimerisation domain CLFO_RS19750 PF00542 Ribosomal protein L7/L12 C-terminal domain CLFO_RS19755 PF00466 Ribosomal protein L10 CLFO_RS19760 PF00687 Ribosomal protein L1p/L10e family CLFO_RS19765 PF00298 Ribosomal protein L11, RNA binding domain CLFO_RS19765 PF03946 Ribosomal protein L11, N-terminal domain CLFO_RS19770 PF02357 Transcription termination factor nusG CLFO_RS19770 PF00467 KOW motif CLFO_RS19780 PF00471 Ribosomal protein L33 CLFO_RS19785 PF03143 Elongation factor Tu C-terminal domain CLFO_RS19785 PF00009 Elongation factor Tu GTP binding domain CLFO_RS19785 PF03144 Elongation factor Tu domain 2 CLFO_RS19790 PF04542 Sigma-70 region 2 CLFO_RS19790 PF08281 Sigma-70, region 4 CLFO_RS19795 PF05991 YacP-like NYN domain CLFO_RS19800 PF00588 SpoU rRNA Methylase family CLFO_RS19800 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLFO_RS19805 PF02511 Thymidylate synthase complementing protein CLFO_RS19815 PF00636 Ribonuclease III domain CLFO_RS19820 PF01406 tRNA synthetases class I (C) catalytic domain CLFO_RS19820 PF09190 DALR domain CLFO_RS19825 PF00132 Bacterial transferase hexapeptide (six repeats) CLFO_RS19825 PF06426 Serine acetyltransferase, N-terminal CLFO_RS19830 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLFO_RS19835 PF06207 Protein of unknown function (DUF1002) CLFO_RS19840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLFO_RS19840 PF03129 Anticodon binding domain CLFO_RS19840 PF09180 Prolyl-tRNA synthetase, C-terminal CLFO_RS19845 PF02542 YgbB family CLFO_RS19850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLFO_RS19860 PF02559 CarD-like/TRCF domain CLFO_RS19870 PF10635 DisA bacterial checkpoint controller linker region CLFO_RS19870 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLFO_RS19875 PF18073 Rubredoxin metal binding domain CLFO_RS19880 PF10431 C-terminal, D2-small domain, of ClpB protein CLFO_RS19880 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS19880 PF17871 AAA lid domain CLFO_RS19880 PF02861 Clp amino terminal domain, pathogenicity island component CLFO_RS19880 PF07724 AAA domain (Cdc48 subfamily) CLFO_RS19885 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CLFO_RS19890 PF02151 UvrB/uvrC motif CLFO_RS19895 PF17727 CtsR C-terminal dimerization domain CLFO_RS19895 PF05848 CtsR N-terminal HTH domain CLFO_RS19900 PF00679 Elongation factor G C-terminus CLFO_RS19900 PF14492 Elongation Factor G, domain II CLFO_RS19900 PF03764 Elongation factor G, domain IV CLFO_RS19900 PF00009 Elongation factor Tu GTP binding domain CLFO_RS19900 PF03144 Elongation factor Tu domain 2 CLFO_RS19905 PF00080 Copper/zinc superoxide dismutase (SODC) CLFO_RS19920 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS19920 PF00155 Aminotransferase class I and II CLFO_RS19925 PF03063 Prismane/CO dehydrogenase family CLFO_RS19930 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS19930 PF01434 Peptidase family M41 CLFO_RS19930 PF17862 AAA+ lid domain CLFO_RS19935 PF02867 Ribonucleotide reductase, barrel domain CLFO_RS19935 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CLFO_RS19960 PF01336 OB-fold nucleic acid binding domain CLFO_RS19960 PF00152 tRNA synthetases class II (D, K and N) CLFO_RS19965 PF01272 Transcription elongation factor, GreA/GreB, C-term CLFO_RS19965 PF03449 Transcription elongation factor, N-terminal CLFO_RS19975 PF01207 Dihydrouridine synthase (Dus) CLFO_RS19980 PF03309 Type III pantothenate kinase CLFO_RS19985 PF12822 ECF transporter, substrate-specific component CLFO_RS19990 PF02237 Biotin protein ligase C terminal domain CLFO_RS19990 PF08279 HTH domain CLFO_RS19990 PF03099 Biotin/lipoate A/B protein ligase family CLFO_RS19995 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CLFO_RS20000 PF00682 HMGL-like CLFO_RS20000 PF00364 Biotin-requiring enzyme CLFO_RS20000 PF02436 Conserved carboxylase domain CLFO_RS20010 PF01039 Carboxyl transferase domain CLFO_RS20015 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS20015 PF17862 AAA+ lid domain CLFO_RS20015 PF01434 Peptidase family M41 CLFO_RS20020 PF11734 TilS substrate C-terminal domain CLFO_RS20020 PF01171 PP-loop family CLFO_RS20025 PF00069 Protein kinase domain CLFO_RS20025 PF03793 PASTA domain CLFO_RS20030 PF00092 von Willebrand factor type A domain CLFO_RS20035 PF12544 Lysine-2,3-aminomutase CLFO_RS20035 PF04055 Radical SAM superfamily CLFO_RS20040 PF01170 Putative RNA methylase family UPF0020 CLFO_RS20040 PF02926 THUMP domain CLFO_RS20055 PF01966 HD domain CLFO_RS20055 PF11871 Domain of unknown function (DUF3391) CLFO_RS20065 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS20075 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS20080 PF03576 Peptidase family S58 CLFO_RS20085 PF01966 HD domain CLFO_RS20085 PF11871 Domain of unknown function (DUF3391) CLFO_RS20095 PF07478 D-ala D-ala ligase C-terminus CLFO_RS20095 PF01820 D-ala D-ala ligase N-terminus CLFO_RS20100 PF09551 Stage II sporulation protein R (spore_II_R) CLFO_RS20105 PF03845 Spore germination protein CLFO_RS20110 PF03845 Spore germination protein CLFO_RS20120 PF03323 Bacillus/Clostridium GerA spore germination protein CLFO_RS20135 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS20135 PF07729 FCD domain CLFO_RS20140 PF08544 GHMP kinases C terminal CLFO_RS20140 PF00288 GHMP kinases N terminal domain CLFO_RS20155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLFO_RS20155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLFO_RS20165 PF08486 Stage II sporulation protein CLFO_RS20180 PF03553 Na+/H+ antiporter family CLFO_RS20185 PF04205 FMN-binding domain CLFO_RS20185 PF01794 Ferric reductase like transmembrane component CLFO_RS20190 PF01895 PhoU domain CLFO_RS20195 PF00005 ABC transporter CLFO_RS20200 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS20205 PF00528 Binding-protein-dependent transport system inner membrane component CLFO_RS20210 PF12849 PBP superfamily domain CLFO_RS20215 PF00672 HAMP domain CLFO_RS20215 PF02743 Cache domain CLFO_RS20215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS20220 PF01368 DHH family CLFO_RS20220 PF02833 DHHA2 domain CLFO_RS20220 PF00571 CBS domain CLFO_RS20220 PF07085 DRTGG domain CLFO_RS20230 PF17179 4Fe-4S dicluster domain CLFO_RS20235 PF00175 Oxidoreductase NAD-binding domain CLFO_RS20235 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLFO_RS20245 PF12706 Beta-lactamase superfamily domain CLFO_RS20255 PF01594 AI-2E family transporter CLFO_RS20260 PF04239 Protein of unknown function (DUF421) CLFO_RS20290 PF00672 HAMP domain CLFO_RS20290 PF02743 Cache domain CLFO_RS20290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLFO_RS20295 PF00288 GHMP kinases N terminal domain CLFO_RS20300 PF01842 ACT domain CLFO_RS20300 PF00742 Homoserine dehydrogenase CLFO_RS20300 PF03447 Homoserine dehydrogenase, NAD binding domain CLFO_RS20310 PF00209 Sodium:neurotransmitter symporter family CLFO_RS20315 PF00158 Sigma-54 interaction domain CLFO_RS20315 PF13426 PAS domain CLFO_RS20315 PF02954 Bacterial regulatory protein, Fis family CLFO_RS20340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLFO_RS20340 PF00384 Molybdopterin oxidoreductase CLFO_RS20340 PF01568 Molydopterin dinucleotide binding domain CLFO_RS20345 PF02913 FAD linked oxidases, C-terminal domain CLFO_RS20345 PF01565 FAD binding domain CLFO_RS20350 PF01012 Electron transfer flavoprotein domain CLFO_RS20350 PF00766 Electron transfer flavoprotein FAD-binding domain CLFO_RS20355 PF01012 Electron transfer flavoprotein domain CLFO_RS20360 PF09861 Lactate racemase N-terminal domain CLFO_RS20365 PF04172 LrgB-like family CLFO_RS20370 PF03788 LrgA family CLFO_RS20375 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLFO_RS20375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS20375 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLFO_RS20375 PF10371 Domain of unknown function CLFO_RS20375 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLFO_RS20380 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS20380 PF07729 FCD domain CLFO_RS20395 PF14698 Argininosuccinate lyase C-terminal CLFO_RS20395 PF00206 Lyase CLFO_RS20400 PF01880 Desulfoferrodoxin CLFO_RS20405 PF13396 Phospholipase_D-nuclease N-terminal CLFO_RS20405 PF13091 PLD-like domain CLFO_RS20415 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CLFO_RS20415 PF10371 Domain of unknown function CLFO_RS20415 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLFO_RS20415 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CLFO_RS20415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLFO_RS20425 PF01370 NAD dependent epimerase/dehydratase family CLFO_RS20435 PF01053 Cys/Met metabolism PLP-dependent enzyme CLFO_RS20440 PF04204 Homoserine O-succinyltransferase CLFO_RS20450 PF00899 ThiF family CLFO_RS20460 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLFO_RS20460 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CLFO_RS20465 PF00355 Rieske [2Fe-2S] domain CLFO_RS20465 PF01266 FAD dependent oxidoreductase CLFO_RS20470 PF02581 Thiamine monophosphate synthase CLFO_RS20475 PF01964 Radical SAM ThiC family CLFO_RS20480 PF04055 Radical SAM superfamily CLFO_RS20480 PF06968 Biotin and Thiamin Synthesis associated domain CLFO_RS20485 PF05690 Thiazole biosynthesis protein ThiG CLFO_RS20490 PF00581 Rhodanese-like domain CLFO_RS20490 PF00899 ThiF family CLFO_RS20505 PF05167 Uncharacterised ACR (DUF711) CLFO_RS20510 PF02861 Clp amino terminal domain, pathogenicity island component CLFO_RS20510 PF10431 C-terminal, D2-small domain, of ClpB protein CLFO_RS20510 PF17871 AAA lid domain CLFO_RS20510 PF07724 AAA domain (Cdc48 subfamily) CLFO_RS20510 PF00004 ATPase family associated with various cellular activities (AAA) CLFO_RS20515 PF01063 Amino-transferase class IV CLFO_RS20535 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLFO_RS20535 PF08666 SAF domain CLFO_RS20545 PF00158 Sigma-54 interaction domain CLFO_RS20545 PF02954 Bacterial regulatory protein, Fis family CLFO_RS20545 PF00989 PAS fold CLFO_RS20550 PF00005 ABC transporter CLFO_RS20550 PF12848 ABC transporter CLFO_RS20555 PF00860 Permease family CLFO_RS20565 PF02347 Glycine cleavage system P-protein CLFO_RS20570 PF02347 Glycine cleavage system P-protein CLFO_RS20575 PF01966 HD domain CLFO_RS20600 PF00871 Acetokinase family CLFO_RS20605 PF03466 LysR substrate binding domain CLFO_RS20605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLFO_RS20615 PF00464 Serine hydroxymethyltransferase CLFO_RS20625 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLFO_RS20625 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CLFO_RS20630 PF03480 Bacterial extracellular solute-binding protein, family 7 CLFO_RS20635 PF01546 Peptidase family M20/M25/M40 CLFO_RS20635 PF07687 Peptidase dimerisation domain CLFO_RS20640 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLFO_RS20645 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLFO_RS20650 PF00557 Metallopeptidase family M24 CLFO_RS20650 PF01321 Creatinase/Prolidase N-terminal domain CLFO_RS20655 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS20655 PF07729 FCD domain CLFO_RS20660 PF03819 MazG nucleotide pyrophosphohydrolase domain CLFO_RS20665 PF01471 Putative peptidoglycan binding domain CLFO_RS20665 PF07486 Cell Wall Hydrolase CLFO_RS20670 PF00005 ABC transporter CLFO_RS20685 PF00920 Dehydratase family CLFO_RS20690 PF07690 Major Facilitator Superfamily CLFO_RS20695 PF00465 Iron-containing alcohol dehydrogenase CLFO_RS20700 PF03372 Endonuclease/Exonuclease/phosphatase family CLFO_RS20715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLFO_RS20715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLFO_RS20720 PF01479 S4 domain CLFO_RS20720 PF00849 RNA pseudouridylate synthase CLFO_RS20725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS20725 PF00183 Hsp90 protein CLFO_RS20740 PF00892 EamA-like transporter family CLFO_RS20745 PF12697 Alpha/beta hydrolase family CLFO_RS20745 PF08241 Methyltransferase domain CLFO_RS20755 PF08281 Sigma-70, region 4 CLFO_RS20755 PF04542 Sigma-70 region 2 CLFO_RS20760 PF03812 2-keto-3-deoxygluconate permease CLFO_RS20765 PF09861 Lactate racemase N-terminal domain CLFO_RS20770 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLFO_RS20775 PF17042 Nucleotide-binding C-terminal domain CLFO_RS20775 PF07005 Sugar-binding N-terminal domain CLFO_RS20780 PF00209 Sodium:neurotransmitter symporter family CLFO_RS20805 PF01554 MatE CLFO_RS20820 PF02447 GntP family permease CLFO_RS20825 PF00920 Dehydratase family CLFO_RS20830 PF07729 FCD domain CLFO_RS20830 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS20845 PF02954 Bacterial regulatory protein, Fis family CLFO_RS20845 PF00158 Sigma-54 interaction domain CLFO_RS20845 PF13188 PAS domain CLFO_RS20850 PF06253 Trimethylamine methyltransferase (MTTB) CLFO_RS20860 PF00474 Sodium:solute symporter family CLFO_RS20890 PF00392 Bacterial regulatory proteins, gntR family CLFO_RS20890 PF00155 Aminotransferase class I and II CLFO_RS20900 PF01695 IstB-like ATP binding protein CLFO_RS20910 PF03050 Transposase IS66 family CLFO_RS20910 PF13817 IS66 C-terminal element CLFO_RS20910 PF13007 Transposase C of IS166 homeodomain CLFO_RS20910 PF13005 zinc-finger binding domain of transposase IS66 CLFO_RS20940 PF02590 Predicted SPOUT methyltransferase CLFO_RS20955 PF01569 PAP2 superfamily CLFO_RS20965 PF13180 PDZ domain CLFO_RS20970 PF00753 Metallo-beta-lactamase superfamily CLFO_RS20975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLFO_RS20995 PF00512 His Kinase A (phospho-acceptor) domain CLFO_RS20995 PF13426 PAS domain CLFO_RS20995 PF00672 HAMP domain CLFO_RS20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS21000 PF00486 Transcriptional regulatory protein, C terminal CLFO_RS21000 PF00072 Response regulator receiver domain CLFO_RS21010 PF00082 Subtilase family CLFO_RS21015 PF01551 Peptidase family M23 CLFO_RS21015 PF08525 Opacity-associated protein A N-terminal motif CLFO_RS21015 PF01476 LysM domain CLFO_RS21020 PF01433 Peptidase family M1 domain CLFO_RS21020 PF11838 ERAP1-like C-terminal domain CLFO_RS21030 PF01695 IstB-like ATP binding protein CLFO_RS21035 PF00005 ABC transporter CLFO_RS21040 PF00005 ABC transporter CLFO_RS21045 PF06463 Molybdenum Cofactor Synthesis C CLFO_RS21045 PF04055 Radical SAM superfamily CLFO_RS21055 PF00072 Response regulator receiver domain CLFO_RS21055 PF04397 LytTr DNA-binding domain CLFO_RS21060 PF04647 Accessory gene regulator B CLFO_RS21065 PF01584 CheW-like domain CLFO_RS21065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLFO_RS21065 PF02895 Signal transducing histidine kinase, homodimeric domain CLFO_RS21065 PF07194 P2 response regulator binding domain CLFO_RS21065 PF01627 Hpt domain CLFO_RS21085 PF00709 Adenylosuccinate synthetase CLFO_RS21100 PF00772 DnaB-like helicase N terminal domain CLFO_RS21100 PF03796 DnaB-like helicase C terminal domain CLFO_RS21105 PF01281 Ribosomal protein L9, N-terminal domain CLFO_RS21105 PF03948 Ribosomal protein L9, C-terminal domain CLFO_RS21110 PF01368 DHH family CLFO_RS21110 PF02272 DHHA1 domain CLFO_RS21145 PF00990 Diguanylate cyclase, GGDEF domain CLFO_RS21145 PF00563 EAL domain CLFO_RS21145 PF03707 Bacterial signalling protein N terminal repeat CLFO_RS21150 PF00589 Phage integrase family CLFO_RS21175 PF11426 Tn7 transposition regulator TnsC CLFO_RS21175 PF13401 AAA domain CLFO_RS21180 PF00665 Integrase core domain CLFO_RS21185 PF08721 TnsA endonuclease C terminal CLFO_RS21185 PF08722 TnsA endonuclease N terminal CLFO_RS21235 PF02899 Phage integrase, N-terminal SAM-like domain CLFO_RS21235 PF00589 Phage integrase family CLFO_RS21335 PF13662 Toprim domain CLFO_RS21335 PF02132 RecR protein CLFO_RS21340 PF02575 YbaB/EbfC DNA-binding family CLFO_RS21345 PF12169 DNA polymerase III subunits gamma and tau domain III CLFO_RS21365 PF06866 Protein of unknown function (DUF1256) CLFO_RS21380 PF00266 Aminotransferase class-V CLFO_RS21385 PF02195 ParB-like nuclease domain CLFO_RS21385 PF17762 HTH domain found in ParB protein CLFO_RS21390 PF13614 AAA domain CLFO_RS21400 PF02195 ParB-like nuclease domain CLFO_RS21400 PF17762 HTH domain found in ParB protein CLFO_RS21405 PF02527 rRNA small subunit methyltransferase G CLFO_RS21410 PF13932 GidA associated domain CLFO_RS21410 PF01134 Glucose inhibited division protein A CLFO_RS21415 PF12631 MnmE helical domain CLFO_RS21415 PF10396 GTP-binding protein TrmE N-terminus CLFO_RS21415 PF01926 50S ribosome-binding GTPase CLFO_RS21420 PF14804 Jag N-terminus CLFO_RS21420 PF01424 R3H domain CLFO_RS21425 PF02096 60Kd inner membrane protein CLFO_RS21430 PF01809 Putative membrane protein insertion efficiency factor CLFO_RS21435 PF00825 Ribonuclease P CLFO_RS21440 PF00468 Ribosomal protein L34