CLFO_RS00005	PF00308	Bacterial dnaA  protein
CLFO_RS00005	PF08299	Bacterial dnaA protein helix-turn-helix
CLFO_RS00005	PF11638	DnaA N-terminal domain
CLFO_RS00010	PF00712	DNA polymerase III beta subunit, N-terminal domain
CLFO_RS00010	PF02767	DNA polymerase III beta subunit, central domain
CLFO_RS00010	PF02768	DNA polymerase III beta subunit, C-terminal domain
CLFO_RS00015	PF13275	S4 domain
CLFO_RS00020	PF02463	RecF/RecN/SMC N terminal domain
CLFO_RS00025	PF04025	CLFO_RS00025
CLFO_RS00030	PF00204	DNA gyrase B
CLFO_RS00030	PF00986	DNA gyrase B subunit, carboxyl terminus
CLFO_RS00030	PF01751	Toprim domain
CLFO_RS00030	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS00035	PF00521	DNA gyrase/topoisomerase IV, subunit A
CLFO_RS00035	PF03989	DNA gyrase C-terminal domain, beta-propeller
CLFO_RS00040	PF01740	STAS domain
CLFO_RS00045	PF13581	Histidine kinase-like ATPase domain
CLFO_RS00050	PF04539	Sigma-70 region 3
CLFO_RS00050	PF04542	Sigma-70 region 2
CLFO_RS00050	PF04545	Sigma-70, region 4
CLFO_RS00075	PF05681	CLFO_RS00075
CLFO_RS00080	PF05683	Fumarase C-terminus
CLFO_RS00085	PF00376	MerR family regulatory protein
CLFO_RS00095	PF02829	3H domain
CLFO_RS00095	PF08279	HTH domain
CLFO_RS00100	PF02445	Quinolinate synthetase A protein
CLFO_RS00105	PF00890	FAD binding domain
CLFO_RS00105	PF02910	Fumarate reductase flavoprotein C-term
CLFO_RS00110	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
CLFO_RS00110	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
CLFO_RS00115	PF13303	CLFO_RS00115
CLFO_RS00120	PF03699	CLFO_RS00120
CLFO_RS00130	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CLFO_RS00130	PF02403	Seryl-tRNA synthetase N-terminal domain
CLFO_RS00140	PF14437	CLFO_RS00140
CLFO_RS00155	PF01206	Sulfurtransferase TusA
CLFO_RS00155	PF02635	DsrE/DsrF-like family
CLFO_RS00160	PF11823	CLFO_RS00160
CLFO_RS00165	PF00924	Mechanosensitive ion channel
CLFO_RS00170	PF06107	CLFO_RS00170
CLFO_RS00175	PF01250	Ribosomal protein S6
CLFO_RS00180	PF00436	Single-strand binding protein family
CLFO_RS00185	PF01084	Ribosomal protein S18
CLFO_RS00190	PF07907	CLFO_RS00190
CLFO_RS00200	PF01386	Ribosomal L25p family
CLFO_RS00200	PF14693	Ribosomal protein TL5, C-terminal domain
CLFO_RS00205	PF01386	Ribosomal L25p family
CLFO_RS00205	PF14693	Ribosomal protein TL5, C-terminal domain
CLFO_RS00235	PF02583	Metal-sensitive transcriptional repressor
CLFO_RS00240	PF00403	Heavy-metal-associated domain
CLFO_RS00245	PF02618	YceG-like family
CLFO_RS00250	PF00899	ThiF family
CLFO_RS00255	PF09335	CLFO_RS00255
CLFO_RS00260	PF01903	CbiX
CLFO_RS00265	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
CLFO_RS00265	PF01488	Shikimate / quinate 5-dehydrogenase
CLFO_RS00265	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
CLFO_RS00270	PF13241	Putative NAD(P)-binding
CLFO_RS00270	PF14824	Sirohaem biosynthesis protein central
CLFO_RS00275	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
CLFO_RS00275	PF03900	Porphobilinogen deaminase, C-terminal domain
CLFO_RS00280	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00280	PF02602	Uroporphyrinogen-III synthase HemD
CLFO_RS00285	PF00490	Delta-aminolevulinic acid dehydratase
CLFO_RS00290	PF00202	Aminotransferase class-III
CLFO_RS00295	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS00295	PF07685	CobB/CobQ-like glutamine amidotransferase domain
CLFO_RS00300	PF12822	Protein of unknown function (DUF3816)
CLFO_RS00310	PF00288	GHMP kinases N terminal domain
CLFO_RS00315	PF02570	Precorrin-8X methylmutase
CLFO_RS00320	PF01888	CbiD
CLFO_RS00325	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00330	PF13847	Methyltransferase domain
CLFO_RS00335	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00340	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00345	PF01890	Cobalamin synthesis G C-terminus
CLFO_RS00345	PF11760	Cobalamin synthesis G N-terminal
CLFO_RS00345	PF11761	CLFO_RS00345
CLFO_RS00350	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00355	PF02571	CLFO_RS00355
CLFO_RS00365	PF10764	CLFO_RS00365
CLFO_RS00370	PF01276	Orn/Lys/Arg decarboxylase, major domain
CLFO_RS00370	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CLFO_RS00375	PF02223	Thymidylate kinase
CLFO_RS00380	PF06153	Protein of unknown function (DUF970)
CLFO_RS00385	PF09115	DNA polymerase III, delta subunit, C terminal
CLFO_RS00385	PF13177	DNA polymerase III, delta subunit
CLFO_RS00390	PF04468	CLFO_RS00390
CLFO_RS00395	PF00578	AhpC/TSA family
CLFO_RS00400	PF05175	Methyltransferase small domain
CLFO_RS00405	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00410	PF04014	Antidote-toxin recognition MazE
CLFO_RS00415	PF01743	Poly A polymerase head domain
CLFO_RS00415	PF01966	HD domain
CLFO_RS00415	PF12627	Probable RNA and SrmB- binding site of polymerase A
CLFO_RS00420	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
CLFO_RS00425	PF07670	Nucleoside recognition
CLFO_RS00430	PF07670	Nucleoside recognition
CLFO_RS00435	PF00133	tRNA synthetases class I (I, L, M and V)
CLFO_RS00435	PF01588	Putative tRNA binding domain
CLFO_RS00435	PF08264	Anticodon-binding domain of tRNA
CLFO_RS00435	PF09334	tRNA synthetases class I (M)
CLFO_RS00440	PF01026	TatD related DNase
CLFO_RS00450	PF03990	CLFO_RS00450
CLFO_RS00450	PF06725	3D domain
CLFO_RS00450	PF07501	G5 domain
CLFO_RS00455	PF13331	CLFO_RS00455
CLFO_RS00455	PF13662	Toprim domain
CLFO_RS00460	PF00398	Ribosomal RNA adenine dimethylase
CLFO_RS00470	PF01699	Sodium/calcium exchanger protein
CLFO_RS00475	PF00581	Rhodanese-like domain
CLFO_RS00485	PF14034	CLFO_RS00485
CLFO_RS00495	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS00495	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CLFO_RS00500	PF03806	CLFO_RS00500
CLFO_RS00505	PF01546	Peptidase family M20/M25/M40
CLFO_RS00505	PF07687	Peptidase dimerisation domain
CLFO_RS00510	PF01276	Orn/Lys/Arg decarboxylase, major domain
CLFO_RS00510	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CLFO_RS00515	PF03816	Cell envelope-related transcriptional attenuator domain
CLFO_RS00520	PF08757	CLFO_RS00520
CLFO_RS00525	PF01225	Mur ligase family, catalytic domain
CLFO_RS00525	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS00525	PF08245	Mur ligase middle domain
CLFO_RS00530	PF00156	Phosphoribosyl transferase domain
CLFO_RS00530	PF09182	Bacterial purine repressor, N-terminal
CLFO_RS00535	PF04026	SpoVG
CLFO_RS00540	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS00540	PF12804	MobA-like NTP transferase domain
CLFO_RS00545	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
CLFO_RS00545	PF14572	Phosphoribosyl synthetase-associated domain
CLFO_RS00550	PF01195	Peptidyl-tRNA hydrolase
CLFO_RS00560	PF00270	DEAD/DEAH box helicase
CLFO_RS00560	PF00271	Helicase conserved C-terminal domain
CLFO_RS00560	PF02559	CarD-like/TRCF domain
CLFO_RS00560	PF03461	TRCF domain
CLFO_RS00565	PF13616	PPIC-type PPIASE domain
CLFO_RS00565	PF13624	SurA N-terminal domain
CLFO_RS00570	PF04014	Antidote-toxin recognition MazE
CLFO_RS00570	PF15714	CLFO_RS00570
CLFO_RS00575	PF01943	CLFO_RS00575
CLFO_RS00575	PF14667	Polysaccharide biosynthesis C-terminal domain
CLFO_RS00580	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
CLFO_RS00580	PF03819	MazG nucleotide pyrophosphohydrolase domain
CLFO_RS00585	PF00216	Bacterial DNA-binding protein
CLFO_RS00590	PF01479	S4 domain
CLFO_RS00595	PF08486	CLFO_RS00595
CLFO_RS00600	PF07873	YabP family
CLFO_RS00605	PF09578	CLFO_RS00605
CLFO_RS00610	PF04977	Septum formation initiator
CLFO_RS00615	PF00575	S1 RNA binding domain
CLFO_RS00620	PF02541	Ppx/GppA phosphatase family
CLFO_RS00625	PF07228	Stage II sporulation protein E (SpoIIE)
CLFO_RS00635	PF01833	IPT/TIG domain
CLFO_RS00640	PF00395	S-layer homology domain
CLFO_RS00645	PF00395	S-layer homology domain
CLFO_RS00655	PF00117	Glutamine amidotransferase class-I
CLFO_RS00655	PF06418	CTP synthase N-terminus
CLFO_RS00660	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS00665	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS00670	PF02321	Outer membrane efflux protein
CLFO_RS00675	PF00932	Lamin Tail Domain
CLFO_RS00675	PF08757	CLFO_RS00675
CLFO_RS00675	PF13287	CLFO_RS00675
CLFO_RS00680	PF00395	S-layer homology domain
CLFO_RS00685	PF04932	CLFO_RS00685
CLFO_RS00690	PF00483	Nucleotidyl transferase
CLFO_RS00695	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
CLFO_RS00700	PF16363	CLFO_RS00700
CLFO_RS00705	PF01061	CLFO_RS00705
CLFO_RS00710	PF00005	ABC transporter
CLFO_RS00710	PF14524	Wzt C-terminal domain
CLFO_RS00715	PF00535	Glycosyl transferase family 2
CLFO_RS00715	PF13489	Methyltransferase domain
CLFO_RS00715	PF13692	Glycosyl transferases group 1
CLFO_RS00725	PF00535	Glycosyl transferase family 2
CLFO_RS00730	PF00884	Sulfatase
CLFO_RS00735	PF00781	Diacylglycerol kinase catalytic domain
CLFO_RS00740	PF13641	Glycosyltransferase like family 2
CLFO_RS00745	PF02397	CLFO_RS00745
CLFO_RS00745	PF13727	CoA-binding domain
CLFO_RS00750	PF04321	RmlD substrate binding domain
CLFO_RS00760	PF00395	S-layer homology domain
CLFO_RS00765	PF00395	S-layer homology domain
CLFO_RS00775	PF16576	CLFO_RS00775
CLFO_RS00780	PF00873	AcrB/AcrD/AcrF family
CLFO_RS00785	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS00785	PF08360	QacR-like protein, C-terminal region
CLFO_RS00790	PF00483	Nucleotidyl transferase
CLFO_RS00795	PF13231	CLFO_RS00795
CLFO_RS00800	PF00535	Glycosyl transferase family 2
CLFO_RS00805	PF04138	CLFO_RS00805
CLFO_RS00810	PF06695	CLFO_RS00810
CLFO_RS00815	PF06338	CLFO_RS00815
CLFO_RS00820	PF09359	VTC domain
CLFO_RS00825	PF16316	CLFO_RS00825
CLFO_RS00830	PF13393	Histidyl-tRNA synthetase
CLFO_RS00835	PF01634	ATP phosphoribosyltransferase
CLFO_RS00840	PF00815	Histidinol dehydrogenase
CLFO_RS00845	PF00155	Aminotransferase class I and II
CLFO_RS00850	PF00475	Imidazoleglycerol-phosphate dehydratase
CLFO_RS00855	PF00117	Glutamine amidotransferase class-I
CLFO_RS00860	PF00977	Histidine biosynthesis protein
CLFO_RS00865	PF00977	Histidine biosynthesis protein
CLFO_RS00870	PF01502	Phosphoribosyl-AMP cyclohydrolase
CLFO_RS00870	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
CLFO_RS00875	PF00209	Sodium:neurotransmitter symporter family
CLFO_RS00880	PF00923	Transaldolase
CLFO_RS00885	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
CLFO_RS00890	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
CLFO_RS00895	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CLFO_RS00895	PF07497	Rho termination factor, RNA-binding domain
CLFO_RS00895	PF07498	Rho termination factor, N-terminal domain
CLFO_RS00900	PF01197	Ribosomal protein L31
CLFO_RS00905	PF00265	Thymidine kinase
CLFO_RS00915	PF07136	CLFO_RS00915
CLFO_RS00920	PF05175	Methyltransferase small domain
CLFO_RS00925	PF00472	RF-1 domain
CLFO_RS00925	PF03462	PCRF domain
CLFO_RS00930	PF02535	CLFO_RS00930
CLFO_RS00935	PF00498	FHA domain
CLFO_RS00940	PF01098	CLFO_RS00940
CLFO_RS00945	PF00905	Penicillin binding protein transpeptidase domain
CLFO_RS00950	PF01300	Telomere recombination
CLFO_RS00950	PF03481	Putative GTP-binding controlling metal-binding
CLFO_RS00955	PF01451	Low molecular weight phosphotyrosine protein phosphatase
CLFO_RS00960	PF02502	Ribose/Galactose Isomerase
CLFO_RS00965	PF14681	Uracil phosphoribosyltransferase
CLFO_RS00970	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CLFO_RS00975	PF00953	Glycosyl transferase family 4
CLFO_RS00980	PF02350	UDP-N-acetylglucosamine 2-epimerase
CLFO_RS00985	PF09527	CLFO_RS00985
CLFO_RS00990	PF03899	CLFO_RS00990
CLFO_RS00995	PF00119	ATP synthase A chain
CLFO_RS01000	PF00137	ATP synthase subunit C
CLFO_RS01005	PF00137	ATP synthase subunit C
CLFO_RS01010	PF00430	ATP synthase B/B' CF(0)
CLFO_RS01015	PF00213	ATP synthase delta (OSCP) subunit
CLFO_RS01020	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CLFO_RS01020	PF00306	ATP synthase alpha/beta chain, C terminal domain
CLFO_RS01020	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CLFO_RS01025	PF00231	ATP synthase
CLFO_RS01030	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CLFO_RS01030	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CLFO_RS01035	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
CLFO_RS01035	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
CLFO_RS01040	PF07009	Protein of unknown function (DUF1312)
CLFO_RS01045	PF07997	Protein of unknown function (DUF1694)
CLFO_RS01050	PF08680	Protein of unknown function (DUF1779)
CLFO_RS01055	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CLFO_RS01060	PF08486	CLFO_RS01060
CLFO_RS01065	PF01551	Peptidase family M23
CLFO_RS01070	PF12116	Stage III sporulation protein D
CLFO_RS01075	PF06723	MreB/Mbl protein
CLFO_RS01080	PF00460	Flagella basal body rod protein
CLFO_RS01080	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CLFO_RS01085	PF00460	Flagella basal body rod protein
CLFO_RS01085	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CLFO_RS01090	PF10135	CLFO_RS01090
CLFO_RS01095	PF07977	FabA-like domain
CLFO_RS01105	PF02706	Chain length determinant protein
CLFO_RS01105	PF13807	CLFO_RS01105
CLFO_RS01110	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS01120	PF02719	Polysaccharide biosynthesis protein
CLFO_RS01120	PF13727	CoA-binding domain
CLFO_RS01125	PF02397	CLFO_RS01125
CLFO_RS01130	PF13460	NADH(P)-binding
CLFO_RS01135	PF00534	Glycosyl transferases group 1
CLFO_RS01135	PF13477	Glycosyl transferase 4-like
CLFO_RS01140	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CLFO_RS01140	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CLFO_RS01140	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CLFO_RS01145	PF00534	Glycosyl transferases group 1
CLFO_RS01150	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS01150	PF14602	Hexapeptide repeat of succinyl-transferase
CLFO_RS01155	PF00534	Glycosyl transferases group 1
CLFO_RS01155	PF13439	Glycosyltransferase Family 4
CLFO_RS01160	PF14296	CLFO_RS01160
CLFO_RS01165	PF01943	CLFO_RS01165
CLFO_RS01165	PF14667	Polysaccharide biosynthesis C-terminal domain
CLFO_RS01170	PF14305	CLFO_RS01170
CLFO_RS01175	PF16363	CLFO_RS01175
CLFO_RS01180	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CLFO_RS01180	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CLFO_RS01180	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CLFO_RS01185	PF06695	CLFO_RS01185
CLFO_RS01190	PF00483	Nucleotidyl transferase
CLFO_RS01195	PF04892	CLFO_RS01195
CLFO_RS01205	PF01381	Helix-turn-helix
CLFO_RS01210	PF09388	Spo0E like sporulation regulatory protein
CLFO_RS01220	PF04754	CLFO_RS01220
CLFO_RS01225	PF14375	CLFO_RS01225
CLFO_RS01230	PF04892	CLFO_RS01230
CLFO_RS01235	PF06262	Possibl zinc metallo-peptidase
CLFO_RS01240	PF01261	Xylose isomerase-like TIM barrel
CLFO_RS01245	PF01391	Collagen triple helix repeat (20 copies)
CLFO_RS01250	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CLFO_RS01255	PF01614	Bacterial transcriptional regulator
CLFO_RS01255	PF09339	IclR helix-turn-helix domain
CLFO_RS01260	PF13624	SurA N-terminal domain
CLFO_RS01275	PF00395	S-layer homology domain
CLFO_RS01280	PF00395	S-layer homology domain
CLFO_RS01285	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CLFO_RS01285	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CLFO_RS01285	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CLFO_RS01285	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CLFO_RS01290	PF00072	Response regulator receiver domain
CLFO_RS01290	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS01295	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS01295	PF00672	HAMP domain
CLFO_RS01295	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS01300	PF10646	CLFO_RS01300
CLFO_RS01305	PF03547	CLFO_RS01305
CLFO_RS01310	PF06695	CLFO_RS01310
CLFO_RS01315	PF00438	S-adenosylmethionine synthetase, N-terminal domain
CLFO_RS01315	PF02772	S-adenosylmethionine synthetase, central domain
CLFO_RS01315	PF02773	S-adenosylmethionine synthetase, C-terminal domain
CLFO_RS01320	PF07872	CLFO_RS01320
CLFO_RS01325	PF11148	CLFO_RS01325
CLFO_RS01330	PF13538	UvrD-like helicase C-terminal domain
CLFO_RS01330	PF13604	AAA domain
CLFO_RS01330	PF14490	Helix-hairpin-helix containing domain
CLFO_RS01330	PF14520	Helix-hairpin-helix domain
CLFO_RS01335	PF00156	Phosphoribosyl transferase domain
CLFO_RS01345	PF04316	Anti-sigma-28 factor, FlgM
CLFO_RS01350	PF05130	FlgN protein
CLFO_RS01355	PF00460	Flagella basal body rod protein
CLFO_RS01355	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CLFO_RS01360	PF00669	Bacterial flagellin N-terminal helical region
CLFO_RS01360	PF00700	Bacterial flagellin C-terminal helical region
CLFO_RS01365	PF02623	FliW protein
CLFO_RS01370	PF02599	Global regulator protein family
CLFO_RS01375	PF00669	Bacterial flagellin N-terminal helical region
CLFO_RS01375	PF00700	Bacterial flagellin C-terminal helical region
CLFO_RS01385	PF00483	Nucleotidyl transferase
CLFO_RS01385	PF00571	CBS domain
CLFO_RS01385	PF01973	CLFO_RS01385
CLFO_RS01390	PF16363	CLFO_RS01390
CLFO_RS01395	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CLFO_RS01400	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS01405	PF00550	Phosphopantetheine attachment site
CLFO_RS01410	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CLFO_RS01410	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CLFO_RS01415	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS01425	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS01430	PF00501	AMP-binding enzyme
CLFO_RS01430	PF13193	AMP-binding enzyme C-terminal domain
CLFO_RS01435	PF01648	4'-phosphopantetheinyl transferase superfamily
CLFO_RS01440	PF02350	UDP-N-acetylglucosamine 2-epimerase
CLFO_RS01445	PF03102	NeuB family
CLFO_RS01445	PF08666	SAF domain
CLFO_RS01450	PF02348	Cytidylyltransferase
CLFO_RS01455	PF00535	Glycosyl transferase family 2
CLFO_RS01460	PF01370	NAD dependent epimerase/dehydratase family
CLFO_RS01465	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CLFO_RS01470	PF08484	C-methyltransferase C-terminal domain
CLFO_RS01475	PF02719	Polysaccharide biosynthesis protein
CLFO_RS01480	PF02348	Cytidylyltransferase
CLFO_RS01485	PF04055	Radical SAM superfamily
CLFO_RS01485	PF13186	Iron-sulfur cluster-binding domain
CLFO_RS01485	PF13353	4Fe-4S single cluster domain
CLFO_RS01490	PF13302	Acetyltransferase (GNAT) domain
CLFO_RS01495	PF03102	NeuB family
CLFO_RS01495	PF08666	SAF domain
CLFO_RS01500	PF08889	CLFO_RS01500
CLFO_RS01505	PF02585	GlcNAc-PI de-N-acetylase
CLFO_RS01515	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CLFO_RS01520	PF13353	4Fe-4S single cluster domain
CLFO_RS01530	PF14070	CLFO_RS01530
CLFO_RS01550	PF01618	CLFO_RS01550
CLFO_RS01555	PF00691	OmpA family
CLFO_RS01555	PF13677	CLFO_RS01555
CLFO_RS01560	PF01758	Sodium Bile acid symporter family
CLFO_RS01560	PF03547	CLFO_RS01560
CLFO_RS01565	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS01570	PF02627	Carboxymuconolactone decarboxylase family
CLFO_RS01575	PF01361	Tautomerase enzyme
CLFO_RS01580	PF01966	HD domain
CLFO_RS01580	PF02541	Ppx/GppA phosphatase family
CLFO_RS01585	PF02503	Polyphosphate kinase middle domain
CLFO_RS01585	PF13089	Polyphosphate kinase N-terminal domain
CLFO_RS01585	PF13090	Polyphosphate kinase C-terminal domain
CLFO_RS01590	PF01966	HD domain
CLFO_RS01590	PF02541	Ppx/GppA phosphatase family
CLFO_RS01595	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS01595	PF06580	CLFO_RS01595
CLFO_RS01595	PF07883	Cupin domain
CLFO_RS01595	PF10114	CLFO_RS01595
CLFO_RS01600	PF00072	Response regulator receiver domain
CLFO_RS01600	PF12833	Helix-turn-helix domain
CLFO_RS01605	PF00920	Dehydratase family
CLFO_RS01610	PF13458	Periplasmic binding protein
CLFO_RS01615	PF02653	CLFO_RS01615
CLFO_RS01620	PF02653	CLFO_RS01620
CLFO_RS01625	PF00005	ABC transporter
CLFO_RS01625	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CLFO_RS01630	PF00005	ABC transporter
CLFO_RS01635	PF01063	Aminotransferase class IV
CLFO_RS01640	PF03773	CLFO_RS01640
CLFO_RS01645	PF03773	CLFO_RS01645
CLFO_RS01650	PF03646	FlaG protein
CLFO_RS01655	PF02465	CLFO_RS01655
CLFO_RS01655	PF07195	CLFO_RS01655
CLFO_RS01660	PF02561	Flagellar protein FliS
CLFO_RS01665	PF05130	FlgN protein
CLFO_RS01670	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
CLFO_RS01670	PF16321	CLFO_RS01670
CLFO_RS01680	PF01043	SecA preprotein cross-linking domain
CLFO_RS01680	PF02810	SEC-C motif
CLFO_RS01680	PF07516	SecA Wing and Scaffold domain
CLFO_RS01680	PF07517	SecA DEAD-like domain
CLFO_RS01685	PF00472	RF-1 domain
CLFO_RS01685	PF03462	PCRF domain
CLFO_RS01690	PF03885	Protein of unknown function (DUF327)
CLFO_RS01700	PF01312	FlhB HrpN YscU SpaS Family
CLFO_RS01705	PF00669	Bacterial flagellin N-terminal helical region
CLFO_RS01705	PF00700	Bacterial flagellin C-terminal helical region
CLFO_RS01710	PF02561	Flagellar protein FliS
CLFO_RS01715	PF00654	Voltage gated chloride channel
CLFO_RS01720	PF00575	S1 RNA binding domain
CLFO_RS01720	PF09371	Tex-like protein N-terminal domain
CLFO_RS01720	PF12836	Helix-hairpin-helix motif
CLFO_RS01720	PF16921	CLFO_RS01720
CLFO_RS01725	PF00005	ABC transporter
CLFO_RS01725	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS01725	PF07568	CLFO_RS01725
CLFO_RS01725	PF13185	GAF domain
CLFO_RS01730	PF00072	Response regulator receiver domain
CLFO_RS01730	PF03861	ANTAR domain
CLFO_RS01735	PF13407	Periplasmic binding protein domain
CLFO_RS01740	PF00005	ABC transporter
CLFO_RS01745	PF02653	CLFO_RS01745
CLFO_RS01750	PF00107	Zinc-binding dehydrogenase
CLFO_RS01750	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS01755	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CLFO_RS01755	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CLFO_RS01760	PF00596	Class II Aldolase and Adducin N-terminal domain
CLFO_RS01765	PF08282	haloacid dehalogenase-like hydrolase
CLFO_RS01770	PF07690	Major Facilitator Superfamily
CLFO_RS01780	PF12822	Protein of unknown function (DUF3816)
CLFO_RS01790	PF02367	Uncharacterised P-loop hydrolase UPF0079
CLFO_RS01795	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS01795	PF06580	CLFO_RS01795
CLFO_RS01795	PF07695	CLFO_RS01795
CLFO_RS01800	PF00072	Response regulator receiver domain
CLFO_RS01800	PF04397	LytTr DNA-binding domain
CLFO_RS01805	PF00350	Dynamin family
CLFO_RS01810	PF00350	Dynamin family
CLFO_RS01815	PF01435	Peptidase family M48
CLFO_RS01820	PF00350	Dynamin family
CLFO_RS01825	PF13240	CLFO_RS01825
CLFO_RS01830	PF00814	Glycoprotease family
CLFO_RS01835	PF00583	Acetyltransferase (GNAT) family
CLFO_RS01840	PF16576	CLFO_RS01840
CLFO_RS01845	PF02687	CLFO_RS01845
CLFO_RS01845	PF12704	MacB-like periplasmic core domain
CLFO_RS01850	PF02687	CLFO_RS01850
CLFO_RS01850	PF12704	MacB-like periplasmic core domain
CLFO_RS01855	PF00005	ABC transporter
CLFO_RS01860	PF00814	Glycoprotease family
CLFO_RS01865	PF00005	ABC transporter
CLFO_RS01865	PF12848	ABC transporter
CLFO_RS01865	PF16326	CLFO_RS01865
CLFO_RS01870	PF02629	CoA binding domain
CLFO_RS01870	PF06971	Putative DNA-binding protein N-terminus
CLFO_RS01875	PF01047	MarR family
CLFO_RS01880	PF12838	4Fe-4S dicluster domain
CLFO_RS01885	PF03780	CLFO_RS01885
CLFO_RS01890	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CLFO_RS01890	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CLFO_RS01895	PF01636	Phosphotransferase enzyme family
CLFO_RS01900	PF00596	Class II Aldolase and Adducin N-terminal domain
CLFO_RS01915	PF13673	Acetyltransferase (GNAT) domain
CLFO_RS01920	PF00730	HhH-GPD superfamily base excision DNA repair protein
CLFO_RS01920	PF07934	8-oxoguanine DNA glycosylase, N-terminal domain
CLFO_RS01925	PF04474	CLFO_RS01925
CLFO_RS01930	PF00166	Chaperonin 10 Kd subunit
CLFO_RS01935	PF00118	TCP-1/cpn60 chaperonin family
CLFO_RS01940	PF07875	CLFO_RS01940
CLFO_RS01950	PF00248	Aldo/keto reductase family
CLFO_RS01950	PF13534	4Fe-4S dicluster domain
CLFO_RS01955	PF03061	Thioesterase superfamily
CLFO_RS01960	PF00478	IMP dehydrogenase / GMP reductase domain
CLFO_RS01960	PF00571	CBS domain
CLFO_RS01965	PF00117	Glutamine amidotransferase class-I
CLFO_RS01965	PF00958	GMP synthase C terminal domain
CLFO_RS01965	PF02540	NAD synthase
CLFO_RS01970	PF06769	Plasmid encoded toxin Txe
CLFO_RS01975	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
CLFO_RS01985	PF12773	CLFO_RS01985
CLFO_RS01985	PF13421	CLFO_RS01985
CLFO_RS02000	PF13240	CLFO_RS02000
CLFO_RS02000	PF13855	Leucine rich repeat
CLFO_RS02005	PF00860	Permease family
CLFO_RS02010	PF02222	ATP-grasp domain
CLFO_RS02015	PF00731	AIR carboxylase
CLFO_RS02020	PF01259	SAICAR synthetase
CLFO_RS02025	PF00156	Phosphoribosyl transferase domain
CLFO_RS02025	PF13522	Glutamine amidotransferase domain
CLFO_RS02030	PF00586	AIR synthase related protein, N-terminal domain
CLFO_RS02030	PF02769	AIR synthase related protein, C-terminal domain
CLFO_RS02035	PF00551	Formyl transferase
CLFO_RS02040	PF01808	AICARFT/IMPCHase bienzyme
CLFO_RS02040	PF02142	MGS-like domain
CLFO_RS02045	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
CLFO_RS02045	PF02843	Phosphoribosylglycinamide synthetase, C domain
CLFO_RS02045	PF02844	Phosphoribosylglycinamide synthetase, N domain
CLFO_RS02050	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS02050	PF12729	CLFO_RS02050
CLFO_RS02060	PF03180	NLPA lipoprotein
CLFO_RS02065	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS02070	PF00005	ABC transporter
CLFO_RS02075	PF01371	Trp repressor protein
CLFO_RS02080	PF00696	Amino acid kinase family
CLFO_RS02080	PF13840	ACT domain
CLFO_RS02085	PF01012	Electron transfer flavoprotein domain
CLFO_RS02090	PF00766	Electron transfer flavoprotein FAD-binding domain
CLFO_RS02090	PF01012	Electron transfer flavoprotein domain
CLFO_RS02095	PF01565	FAD binding domain
CLFO_RS02095	PF02913	FAD linked oxidases, C-terminal domain
CLFO_RS02115	PF02811	PHP domain
CLFO_RS02120	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS02125	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS02125	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS02125	PF10531	SLBB domain
CLFO_RS02125	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLFO_RS02130	PF00037	4Fe-4S binding domain
CLFO_RS02130	PF02256	Iron hydrogenase small subunit
CLFO_RS02130	PF02906	Iron only hydrogenase large subunit, C-terminal domain
CLFO_RS02130	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CLFO_RS02130	PF13510	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS02135	PF00072	Response regulator receiver domain
CLFO_RS02135	PF03861	ANTAR domain
CLFO_RS02140	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS02140	PF07568	CLFO_RS02140
CLFO_RS02140	PF12282	Signal transduction histidine kinase
CLFO_RS02140	PF13426	PAS domain
CLFO_RS02145	PF06277	Ethanolamine utilisation protein EutA
CLFO_RS02150	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
CLFO_RS02155	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
CLFO_RS02160	PF00936	BMC domain
CLFO_RS02165	PF00936	BMC domain
CLFO_RS02170	PF00171	Aldehyde dehydrogenase family
CLFO_RS02175	PF00936	BMC domain
CLFO_RS02180	PF01923	Cobalamin adenosyltransferase
CLFO_RS02185	PF06130	CLFO_RS02185
CLFO_RS02195	PF03319	Ethanolamine utilisation protein EutN/carboxysome
CLFO_RS02200	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS02200	PF10531	SLBB domain
CLFO_RS02200	PF13375	RnfC Barrel sandwich hybrid domain
CLFO_RS02200	PF13534	4Fe-4S dicluster domain
CLFO_RS02205	PF00936	BMC domain
CLFO_RS02210	PF04346	CLFO_RS02210
CLFO_RS02215	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS02220	PF04542	Sigma-70 region 2
CLFO_RS02220	PF08281	Sigma-70, region 4
CLFO_RS02225	PF14285	CLFO_RS02225
CLFO_RS02240	PF00793	DAHP synthetase I family
CLFO_RS02245	PF00425	chorismate binding enzyme
CLFO_RS02245	PF04715	Anthranilate synthase component I, N terminal region
CLFO_RS02250	PF00117	Glutamine amidotransferase class-I
CLFO_RS02255	PF00591	Glycosyl transferase family, a/b domain
CLFO_RS02255	PF02885	Glycosyl transferase family, helical bundle domain
CLFO_RS02260	PF00218	Indole-3-glycerol phosphate synthase
CLFO_RS02265	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
CLFO_RS02270	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS02275	PF00290	Tryptophan synthase alpha chain
CLFO_RS02280	PF01842	ACT domain
CLFO_RS02280	PF02153	Prephenate dehydrogenase
CLFO_RS02285	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CLFO_RS02290	PF00800	Prephenate dehydratase
CLFO_RS02295	PF01264	Chorismate synthase
CLFO_RS02300	PF01761	3-dehydroquinate synthase
CLFO_RS02305	PF01202	Shikimate kinase
CLFO_RS02305	PF01817	Chorismate mutase type II
CLFO_RS02310	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS02310	PF00989	PAS fold
CLFO_RS02310	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS02310	PF17159	CLFO_RS02310
CLFO_RS02315	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS02320	PF00580	UvrD/REP helicase N-terminal domain
CLFO_RS02320	PF12073	CLFO_RS02320
CLFO_RS02320	PF13361	UvrD-like helicase C-terminal domain
CLFO_RS02325	PF00533	BRCA1 C Terminus (BRCT) domain
CLFO_RS02325	PF01653	NAD-dependent DNA ligase adenylation domain
CLFO_RS02325	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
CLFO_RS02325	PF03120	NAD-dependent DNA ligase OB-fold domain
CLFO_RS02325	PF12826	Helix-hairpin-helix motif
CLFO_RS02325	PF14520	Helix-hairpin-helix domain
CLFO_RS02330	PF07314	CLFO_RS02330
CLFO_RS02335	PF02915	Rubrerythrin
CLFO_RS02340	PF04023	FeoA domain
CLFO_RS02345	PF02421	Ferrous iron transport protein B
CLFO_RS02345	PF07664	CLFO_RS02345
CLFO_RS02345	PF07670	Nucleoside recognition
CLFO_RS02355	PF03706	CLFO_RS02355
CLFO_RS02365	PF00586	AIR synthase related protein, N-terminal domain
CLFO_RS02365	PF02769	AIR synthase related protein, C-terminal domain
CLFO_RS02370	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS02370	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS02370	PF11741	AMIN domain
CLFO_RS02375	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
CLFO_RS02380	PF10646	CLFO_RS02380
CLFO_RS02385	PF01138	3' exoribonuclease family, domain 1
CLFO_RS02385	PF03725	3' exoribonuclease family, domain 2
CLFO_RS02390	PF01725	Ham1 family
CLFO_RS02395	PF12850	Calcineurin-like phosphoesterase superfamily domain
CLFO_RS02435	PF13936	Helix-turn-helix domain
CLFO_RS02440	PF00173	Cytochrome b5-like Heme/Steroid binding domain
CLFO_RS02445	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
CLFO_RS02445	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
CLFO_RS02450	PF00374	Nickel-dependent hydrogenase
CLFO_RS02455	PF01750	Hydrogenase maturation protease
CLFO_RS02465	PF00708	Acylphosphatase
CLFO_RS02465	PF01300	Telomere recombination
CLFO_RS02465	PF07503	HypF finger
CLFO_RS02470	PF01455	HupF/HypC family
CLFO_RS02475	PF01924	Hydrogenase formation hypA family
CLFO_RS02480	PF00586	AIR synthase related protein, N-terminal domain
CLFO_RS02480	PF02769	AIR synthase related protein, C-terminal domain
CLFO_RS02485	PF07883	Cupin domain
CLFO_RS02495	PF00999	Sodium/hydrogen exchanger family
CLFO_RS02500	PF03323	CLFO_RS02500
CLFO_RS02515	PF02073	Thermophilic metalloprotease (M29)
CLFO_RS02520	PF00497	Bacterial extracellular solute-binding proteins, family 3
CLFO_RS02525	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS02530	PF00005	ABC transporter
CLFO_RS02540	PF00107	Zinc-binding dehydrogenase
CLFO_RS02540	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS02545	PF03099	Biotin/lipoate A/B protein ligase family
CLFO_RS02550	PF04055	Radical SAM superfamily
CLFO_RS02555	PF00158	Sigma-54 interaction domain
CLFO_RS02555	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS02555	PF13426	PAS domain
CLFO_RS02560	PF09585	Conserved hypothetical protein (Lin0512_fam)
CLFO_RS02565	PF00676	Dehydrogenase E1 component
CLFO_RS02570	PF02779	Transketolase, pyrimidine binding domain
CLFO_RS02570	PF02780	Transketolase, C-terminal domain
CLFO_RS02575	PF01513	ATP-NAD kinase
CLFO_RS02580	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CLFO_RS02580	PF00364	Biotin-requiring enzyme
CLFO_RS02580	PF02817	e3 binding domain
CLFO_RS02585	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CLFO_RS02585	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS02590	PF08447	PAS fold
CLFO_RS02590	PF10114	CLFO_RS02590
CLFO_RS02595	PF00158	Sigma-54 interaction domain
CLFO_RS02595	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS02595	PF06506	Propionate catabolism activator
CLFO_RS02600	PF07005	Protein of unknown function, DUF1537
CLFO_RS02600	PF17042	CLFO_RS02600
CLFO_RS02605	PF02447	CLFO_RS02605
CLFO_RS02610	PF09861	Domain of unknown function (DUF2088)
CLFO_RS02615	PF00920	Dehydratase family
CLFO_RS02620	PF02548	Ketopantoate hydroxymethyltransferase
CLFO_RS02625	PF10055	CLFO_RS02625
CLFO_RS02630	PF00395	S-layer homology domain
CLFO_RS02630	PF13306	Leucine rich repeats (6 copies)
CLFO_RS02630	PF14478	Domain of unknown function (DUF4430)
CLFO_RS02635	PF12822	Protein of unknown function (DUF3816)
CLFO_RS02640	PF13847	Methyltransferase domain
CLFO_RS02645	PF08780	Nucleotidyltransferase substrate binding protein like
CLFO_RS02650	PF01909	Nucleotidyltransferase domain
CLFO_RS02660	PF07705	CARDB
CLFO_RS02660	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS02660	PF14478	Domain of unknown function (DUF4430)
CLFO_RS02680	PF07726	ATPase family associated with various cellular activities (AAA)
CLFO_RS02685	PF01882	CLFO_RS02685
CLFO_RS02690	PF07584	CLFO_RS02690
CLFO_RS02695	PF00092	von Willebrand factor type A domain
CLFO_RS02695	PF07090	Protein of unknown function (DUF1355)
CLFO_RS02695	PF13519	von Willebrand factor type A domain
CLFO_RS02700	PF14478	Domain of unknown function (DUF4430)
CLFO_RS02705	PF00432	Prenyltransferase and squalene oxidase repeat
CLFO_RS02710	PF00395	S-layer homology domain
CLFO_RS02710	PF14478	Domain of unknown function (DUF4430)
CLFO_RS02715	PF04461	Protein of unknown function (DUF520)
CLFO_RS02720	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS02720	PF00483	Nucleotidyl transferase
CLFO_RS02720	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CLFO_RS02725	PF06165	Glycosyltransferase family 36
CLFO_RS02725	PF10091	Putative glucoamylase
CLFO_RS02725	PF17167	CLFO_RS02725
CLFO_RS02740	PF00005	ABC transporter
CLFO_RS02745	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS02750	PF00704	Glycosyl hydrolases family 18
CLFO_RS02755	PF01522	Polysaccharide deacetylase
CLFO_RS02760	PF00563	EAL domain
CLFO_RS02760	PF00990	GGDEF domain
CLFO_RS02760	PF08447	PAS fold
CLFO_RS02765	PF01008	Initiation factor 2 subunit family
CLFO_RS02770	PF02535	CLFO_RS02770
CLFO_RS02775	PF01522	Polysaccharide deacetylase
CLFO_RS02780	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS02790	PF13393	Histidyl-tRNA synthetase
CLFO_RS02795	PF03063	Prismane/CO dehydrogenase family
CLFO_RS02800	PF01891	Cobalt uptake substrate-specific transmembrane region
CLFO_RS02805	PF02361	Cobalt transport protein
CLFO_RS02810	PF00005	ABC transporter
CLFO_RS02815	PF12838	4Fe-4S dicluster domain
CLFO_RS02820	PF10087	CLFO_RS02820
CLFO_RS02825	PF12672	CLFO_RS02825
CLFO_RS02830	PF00258	Flavodoxin
CLFO_RS02835	PF02421	Ferrous iron transport protein B
CLFO_RS02835	PF07664	CLFO_RS02835
CLFO_RS02835	PF07670	Nucleoside recognition
CLFO_RS02840	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS02840	PF00672	HAMP domain
CLFO_RS02845	PF00180	Isocitrate/isopropylmalate dehydrogenase
CLFO_RS02850	PF00330	Aconitase family (aconitate hydratase)
CLFO_RS02850	PF00694	Aconitase C-terminal domain
CLFO_RS02855	PF00682	HMGL-like
CLFO_RS02860	PF01584	CheW-like domain
CLFO_RS02865	PF00149	Calcineurin-like phosphoesterase
CLFO_RS02865	PF12320	Type 5 capsule protein repressor C-terminal domain
CLFO_RS02870	PF13476	AAA domain
CLFO_RS02870	PF13558	Putative exonuclease SbcCD, C subunit
CLFO_RS02875	PF14512	Putative TM nitroreductase
CLFO_RS02880	PF01926	50S ribosome-binding GTPase
CLFO_RS02880	PF06071	Protein of unknown function (DUF933)
CLFO_RS02885	PF00731	AIR carboxylase
CLFO_RS02890	PF02540	NAD synthase
CLFO_RS02895	PF01969	Protein of unknown function DUF111
CLFO_RS02900	PF03180	NLPA lipoprotein
CLFO_RS02905	PF00005	ABC transporter
CLFO_RS02905	PF09383	NIL domain
CLFO_RS02910	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS02915	PF00501	AMP-binding enzyme
CLFO_RS02915	PF14535	AMP-binding enzyme C-terminal domain
CLFO_RS02920	PF00155	Aminotransferase class I and II
CLFO_RS02925	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS02930	PF00037	4Fe-4S binding domain
CLFO_RS02935	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS02935	PF17147	CLFO_RS02935
CLFO_RS02940	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS02950	PF08281	Sigma-70, region 4
CLFO_RS02955	PF10960	CLFO_RS02955
CLFO_RS02965	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS02965	PF14903	CLFO_RS02965
CLFO_RS02975	PF00133	tRNA synthetases class I (I, L, M and V)
CLFO_RS02975	PF08264	Anticodon-binding domain of tRNA
CLFO_RS02980	PF10648	CLFO_RS02980
CLFO_RS02980	PF14343	CLFO_RS02980
CLFO_RS02985	PF13686	DsrE/DsrF/DrsH-like family
CLFO_RS02990	PF00266	Aminotransferase class-V
CLFO_RS02995	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
CLFO_RS02995	PF00364	Biotin-requiring enzyme
CLFO_RS02995	PF00682	HMGL-like
CLFO_RS02995	PF02436	Conserved carboxylase domain
CLFO_RS02995	PF02785	Biotin carboxylase C-terminal domain
CLFO_RS02995	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CLFO_RS03000	PF05228	CLFO_RS03000
CLFO_RS03005	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS03005	PF00672	HAMP domain
CLFO_RS03005	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS03010	PF00356	Bacterial regulatory proteins, lacI family
CLFO_RS03010	PF13377	Periplasmic binding protein-like domain
CLFO_RS03015	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
CLFO_RS03015	PF05697	Bacterial trigger factor protein (TF)
CLFO_RS03015	PF05698	Bacterial trigger factor protein (TF) C-terminus
CLFO_RS03020	PF00574	Clp protease
CLFO_RS03025	PF06689	ClpX C4-type zinc finger
CLFO_RS03025	PF07724	AAA domain (Cdc48 subfamily)
CLFO_RS03025	PF10431	C-terminal, D2-small domain, of ClpB protein
CLFO_RS03030	PF02417	CLFO_RS03030
CLFO_RS03035	PF02417	CLFO_RS03035
CLFO_RS03040	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS03040	PF05362	Lon protease (S16) C-terminal proteolytic domain
CLFO_RS03045	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS03045	PF02190	ATP-dependent protease La (LON) domain
CLFO_RS03045	PF05362	Lon protease (S16) C-terminal proteolytic domain
CLFO_RS03050	PF01926	50S ribosome-binding GTPase
CLFO_RS03060	PF00301	Rubredoxin
CLFO_RS03065	PF00171	Aldehyde dehydrogenase family
CLFO_RS03070	PF00696	Amino acid kinase family
CLFO_RS03075	PF03807	NADP oxidoreductase coenzyme F420-dependent
CLFO_RS03075	PF14748	Pyrroline-5-carboxylate reductase dimerisation
CLFO_RS03080	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
CLFO_RS03080	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
CLFO_RS03085	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CLFO_RS03085	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CLFO_RS03090	PF03747	ADP-ribosylglycohydrolase
CLFO_RS03090	PF14559	Tetratricopeptide repeat
CLFO_RS03095	PF00072	Response regulator receiver domain
CLFO_RS03095	PF04397	LytTr DNA-binding domain
CLFO_RS03105	PF14501	GHKL domain
CLFO_RS03110	PF04647	CLFO_RS03110
CLFO_RS03120	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS03120	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS03125	PF07690	Major Facilitator Superfamily
CLFO_RS03130	PF13091	PLD-like domain
CLFO_RS03135	PF09989	CLFO_RS03135
CLFO_RS03140	PF09989	CLFO_RS03140
CLFO_RS03145	PF01869	BadF/BadG/BcrA/BcrD ATPase family
CLFO_RS03150	PF07853	CLFO_RS03150
CLFO_RS03155	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS03165	PF07969	Amidohydrolase family
CLFO_RS03170	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS03175	PF06953	Arsenical resistance operon trans-acting repressor ArsD
CLFO_RS03180	PF02374	Anion-transporting ATPase
CLFO_RS03185	PF02374	Anion-transporting ATPase
CLFO_RS03190	PF00158	Sigma-54 interaction domain
CLFO_RS03190	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS03195	PF16576	CLFO_RS03195
CLFO_RS03200	PF00873	AcrB/AcrD/AcrF family
CLFO_RS03205	PF00266	Aminotransferase class-V
CLFO_RS03210	PF03063	Prismane/CO dehydrogenase family
CLFO_RS03215	PF13649	Methyltransferase domain
CLFO_RS03220	PF00027	Cyclic nucleotide-binding domain
CLFO_RS03220	PF13545	Crp-like helix-turn-helix domain
CLFO_RS03225	PF12801	CLFO_RS03225
CLFO_RS03230	PF02583	Metal-sensitive transcriptional repressor
CLFO_RS03235	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS03240	PF01758	Sodium Bile acid symporter family
CLFO_RS03245	PF01910	Domain of unknown function DUF77
CLFO_RS03250	PF04309	Glycerol-3-phosphate responsive antiterminator
CLFO_RS03255	PF00230	Major intrinsic protein
CLFO_RS03260	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CLFO_RS03260	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CLFO_RS03265	PF01266	FAD dependent oxidoreductase
CLFO_RS03265	PF04324	BFD-like [2Fe-2S] binding domain
CLFO_RS03270	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS03275	PF07892	Protein of unknown function (DUF1667)
CLFO_RS03280	PF00158	Sigma-54 interaction domain
CLFO_RS03280	PF00989	PAS fold
CLFO_RS03295	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS03295	PF07700	Heme NO binding
CLFO_RS03305	PF00579	tRNA synthetases class I (W and Y)
CLFO_RS03310	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS03315	PF05949	Bacterial protein of unknown function (DUF881)
CLFO_RS03325	PF00491	Arginase family
CLFO_RS03330	PF01564	Spermine/spermidine synthase
CLFO_RS03335	PF08780	Nucleotidyltransferase substrate binding protein like
CLFO_RS03340	PF01909	Nucleotidyltransferase domain
CLFO_RS03355	PF00072	Response regulator receiver domain
CLFO_RS03355	PF04397	LytTr DNA-binding domain
CLFO_RS03365	PF05685	Putative restriction endonuclease
CLFO_RS03370	PF01526	CLFO_RS03370
CLFO_RS03375	PF00158	Sigma-54 interaction domain
CLFO_RS03375	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS03380	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS03385	PF00480	ROK family
CLFO_RS03395	PF00872	CLFO_RS03395
CLFO_RS03405	PF00082	Subtilase family
CLFO_RS03405	PF01344	Kelch motif
CLFO_RS03410	PF05593	CLFO_RS03410
CLFO_RS03420	PF08481	CLFO_RS03420
CLFO_RS03425	PF05598	CLFO_RS03425
CLFO_RS03425	PF13751	CLFO_RS03425
CLFO_RS03430	PF05593	CLFO_RS03430
CLFO_RS03440	PF05593	CLFO_RS03440
CLFO_RS03455	PF00239	Resolvase, N terminal domain
CLFO_RS03460	PF08845	CLFO_RS03460
CLFO_RS03465	PF01548	CLFO_RS03465
CLFO_RS03465	PF02371	CLFO_RS03465
CLFO_RS03485	PF01797	Transposase IS200 like
CLFO_RS03490	PF01609	Transposase DDE domain
CLFO_RS03495	PF05598	CLFO_RS03495
CLFO_RS03520	PF04986	CLFO_RS03520
CLFO_RS03525	PF00472	RF-1 domain
CLFO_RS03530	PF01139	tRNA-splicing ligase RtcB
CLFO_RS03535	PF10057	CLFO_RS03535
CLFO_RS03540	PF02552	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
CLFO_RS03545	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS03545	PF17147	CLFO_RS03545
CLFO_RS03550	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS03555	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS03560	PF14697	4Fe-4S dicluster domain
CLFO_RS03565	PF00994	Probable molybdopterin binding domain
CLFO_RS03565	PF02464	Competence-damaged protein
CLFO_RS03570	PF04307	CLFO_RS03570
CLFO_RS03575	PF13419	Haloacid dehalogenase-like hydrolase
CLFO_RS03585	PF12804	MobA-like NTP transferase domain
CLFO_RS03590	PF03780	CLFO_RS03590
CLFO_RS03600	PF00550	Phosphopantetheine attachment site
CLFO_RS03605	PF01545	Cation efflux family
CLFO_RS03605	PF16916	CLFO_RS03605
CLFO_RS03610	PF01895	PhoU domain
CLFO_RS03610	PF02690	CLFO_RS03610
CLFO_RS03615	PF03575	Peptidase family S51
CLFO_RS03620	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS03620	PF08245	Mur ligase middle domain
CLFO_RS03620	PF08443	RimK-like ATP-grasp domain
CLFO_RS03625	PF12710	haloacid dehalogenase-like hydrolase
CLFO_RS03630	PF02424	ApbE family
CLFO_RS03635	PF00082	Subtilase family
CLFO_RS03640	PF00041	Fibronectin type III domain
CLFO_RS03640	PF00395	S-layer homology domain
CLFO_RS03640	PF06739	CLFO_RS03640
CLFO_RS03645	PF04205	FMN-binding domain
CLFO_RS03650	PF00583	Acetyltransferase (GNAT) family
CLFO_RS03655	PF01471	Putative peptidoglycan binding domain
CLFO_RS03655	PF03734	L,D-transpeptidase catalytic domain
CLFO_RS03660	PF00809	Pterin binding enzyme
CLFO_RS03660	PF02310	B12 binding domain
CLFO_RS03660	PF02574	Homocysteine S-methyltransferase
CLFO_RS03660	PF02607	B12 binding domain
CLFO_RS03665	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS03665	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS03665	PF13426	PAS domain
CLFO_RS03670	PF00909	Ammonium Transporter Family
CLFO_RS03675	PF00543	Nitrogen regulatory protein P-II
CLFO_RS03680	PF07521	RNA-metabolising metallo-beta-lactamase
CLFO_RS03680	PF10996	Beta-Casp domain
CLFO_RS03680	PF16661	CLFO_RS03680
CLFO_RS03685	PF02308	CLFO_RS03685
CLFO_RS03690	PF01966	HD domain
CLFO_RS03695	PF00072	Response regulator receiver domain
CLFO_RS03695	PF07228	Stage II sporulation protein E (SpoIIE)
CLFO_RS03700	PF00381	PTS HPr component phosphorylation site
CLFO_RS03705	PF01614	Bacterial transcriptional regulator
CLFO_RS03705	PF09339	IclR helix-turn-helix domain
CLFO_RS03710	PF01081	KDPG and KHG aldolase
CLFO_RS03715	PF00294	pfkB family carbohydrate kinase
CLFO_RS03720	PF00294	pfkB family carbohydrate kinase
CLFO_RS03725	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CLFO_RS03730	PF01232	Mannitol dehydrogenase Rossmann domain
CLFO_RS03730	PF08125	Mannitol dehydrogenase C-terminal domain
CLFO_RS03735	PF04295	CLFO_RS03735
CLFO_RS03735	PF08666	SAF domain
CLFO_RS03740	PF02614	Glucuronate isomerase
CLFO_RS03745	PF00672	HAMP domain
CLFO_RS03745	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS03745	PF06580	CLFO_RS03745
CLFO_RS03750	PF00072	Response regulator receiver domain
CLFO_RS03750	PF12833	Helix-turn-helix domain
CLFO_RS03755	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS03760	PF04290	CLFO_RS03760
CLFO_RS03765	PF06808	CLFO_RS03765
CLFO_RS03770	PF00356	Bacterial regulatory proteins, lacI family
CLFO_RS03770	PF13377	Periplasmic binding protein-like domain
CLFO_RS03775	PF00005	ABC transporter
CLFO_RS03775	PF08402	TOBE domain
CLFO_RS03780	PF07470	Glycosyl Hydrolase Family 88
CLFO_RS03785	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS03790	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS03795	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS03800	PF00295	Glycosyl hydrolases family 28
CLFO_RS03800	PF12708	Pectate lyase superfamily protein
CLFO_RS03805	PF04962	KduI/IolB family
CLFO_RS03810	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS03815	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS03815	PF07729	FCD domain
CLFO_RS03820	PF00107	Zinc-binding dehydrogenase
CLFO_RS03820	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS03825	PF09861	Domain of unknown function (DUF2088)
CLFO_RS03835	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS03840	PF04290	CLFO_RS03840
CLFO_RS03845	PF06808	CLFO_RS03845
CLFO_RS03850	PF03786	D-mannonate dehydratase (UxuA)
CLFO_RS03855	PF01232	Mannitol dehydrogenase Rossmann domain
CLFO_RS03855	PF08125	Mannitol dehydrogenase C-terminal domain
CLFO_RS03860	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS03860	PF07729	FCD domain
CLFO_RS03865	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS03870	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS03875	PF04290	CLFO_RS03875
CLFO_RS03880	PF06808	CLFO_RS03880
CLFO_RS03885	PF00920	Dehydratase family
CLFO_RS03890	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CLFO_RS03890	PF13378	Enolase C-terminal domain-like
CLFO_RS03895	PF03328	HpcH/HpaI aldolase/citrate lyase family
CLFO_RS03900	PF03471	Transporter associated domain
CLFO_RS03905	PF00120	Glutamine synthetase, catalytic domain
CLFO_RS03910	PF12732	CLFO_RS03910
CLFO_RS03920	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CLFO_RS03920	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CLFO_RS03925	PF01960	ArgJ family
CLFO_RS03930	PF00696	Amino acid kinase family
CLFO_RS03935	PF00202	Aminotransferase class-III
CLFO_RS03940	PF00117	Glutamine amidotransferase class-I
CLFO_RS03940	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
CLFO_RS03945	PF02142	MGS-like domain
CLFO_RS03945	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CLFO_RS03945	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CLFO_RS03950	PF12663	CLFO_RS03950
CLFO_RS03955	PF06445	GyrI-like small molecule binding domain
CLFO_RS03960	PF08279	HTH domain
CLFO_RS03960	PF13280	CLFO_RS03960
CLFO_RS03965	PF00245	Alkaline phosphatase
CLFO_RS03970	PF07907	CLFO_RS03970
CLFO_RS03980	PF00239	Resolvase, N terminal domain
CLFO_RS03980	PF13411	MerR HTH family regulatory protein
CLFO_RS03985	PF01385	CLFO_RS03985
CLFO_RS03985	PF07282	CLFO_RS03985
CLFO_RS03985	PF12323	CLFO_RS03985
CLFO_RS03990	PF13566	CLFO_RS03990
CLFO_RS03995	PF11188	CLFO_RS03995
CLFO_RS04000	PF13443	Cro/C1-type HTH DNA-binding domain
CLFO_RS04005	PF13777	CLFO_RS04005
CLFO_RS04010	PF14242	CLFO_RS04010
CLFO_RS04015	PF00072	Response regulator receiver domain
CLFO_RS04015	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS04020	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS04020	PF00672	HAMP domain
CLFO_RS04020	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS04025	PF00310	Glutamine amidotransferases class-II
CLFO_RS04025	PF01493	GXGXG motif
CLFO_RS04025	PF01645	Conserved region in glutamate synthase
CLFO_RS04025	PF04898	Glutamate synthase central domain
CLFO_RS04035	PF02915	Rubrerythrin
CLFO_RS04040	PF13192	Thioredoxin domain
CLFO_RS04045	PF00682	HMGL-like
CLFO_RS04050	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS04055	PF00005	ABC transporter
CLFO_RS04060	PF01891	Cobalt uptake substrate-specific transmembrane region
CLFO_RS04065	PF02553	CLFO_RS04065
CLFO_RS04070	PF02361	Cobalt transport protein
CLFO_RS04075	PF00005	ABC transporter
CLFO_RS04090	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS04095	PF00872	CLFO_RS04095
CLFO_RS04100	PF01145	SPFH domain / Band 7 family
CLFO_RS04100	PF15975	CLFO_RS04100
CLFO_RS04115	PF00072	Response regulator receiver domain
CLFO_RS04115	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS04120	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS04120	PF00672	HAMP domain
CLFO_RS04120	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS04125	PF07885	Ion channel
CLFO_RS04130	PF00571	CBS domain
CLFO_RS04130	PF01595	CLFO_RS04130
CLFO_RS04130	PF03471	Transporter associated domain
CLFO_RS04140	PF00005	ABC transporter
CLFO_RS04145	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS04150	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
CLFO_RS04155	PF04239	Protein of unknown function (DUF421)
CLFO_RS04160	PF00462	Glutaredoxin
CLFO_RS04165	PF00696	Amino acid kinase family
CLFO_RS04165	PF01842	ACT domain
CLFO_RS04170	PF11155	Domain of unknown function (DUF2935)
CLFO_RS04175	PF12146	Putative lysophospholipase
CLFO_RS04180	PF01541	GIY-YIG catalytic domain
CLFO_RS04185	PF09388	Spo0E like sporulation regulatory protein
CLFO_RS04190	PF00210	Ferritin-like domain
CLFO_RS04195	PF08282	haloacid dehalogenase-like hydrolase
CLFO_RS04200	PF07155	ECF-type riboflavin transporter, S component
CLFO_RS04205	PF00266	Aminotransferase class-V
CLFO_RS04210	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS04215	PF03590	Aspartate-ammonia ligase
CLFO_RS04225	PF07875	CLFO_RS04225
CLFO_RS04230	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS04230	PF00679	Elongation factor G C-terminus
CLFO_RS04230	PF03144	Elongation factor Tu domain 2
CLFO_RS04235	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS04240	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS04240	PF10531	SLBB domain
CLFO_RS04240	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLFO_RS04240	PF12838	4Fe-4S dicluster domain
CLFO_RS04245	PF00037	4Fe-4S binding domain
CLFO_RS04245	PF00384	Molybdopterin oxidoreductase
CLFO_RS04245	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CLFO_RS04245	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS04245	PF13510	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS04245	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CLFO_RS04265	PF00085	Thioredoxin
CLFO_RS04275	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CLFO_RS04280	PF02504	Fatty acid synthesis protein
CLFO_RS04285	PF09338	CLFO_RS04285
CLFO_RS04295	PF02028	BCCT family transporter
CLFO_RS04300	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS04310	PF09989	CLFO_RS04310
CLFO_RS04315	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
CLFO_RS04315	PF09989	CLFO_RS04315
CLFO_RS04320	PF01869	BadF/BadG/BcrA/BcrD ATPase family
CLFO_RS04325	PF01814	Hemerythrin HHE cation binding domain
CLFO_RS04330	PF07136	CLFO_RS04330
CLFO_RS04335	PF07870	CLFO_RS04335
CLFO_RS04350	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS04355	PF01098	CLFO_RS04355
CLFO_RS04360	PF00571	CBS domain
CLFO_RS04360	PF01769	Divalent cation transporter
CLFO_RS04360	PF03448	MgtE intracellular N domain
CLFO_RS04365	PF01471	Putative peptidoglycan binding domain
CLFO_RS04365	PF07486	Cell Wall Hydrolase
CLFO_RS04370	PF03413	Peptidase propeptide and YPEB domain
CLFO_RS04370	PF14620	CLFO_RS04370
CLFO_RS04375	PF01557	Fumarylacetoacetate (FAA) hydrolase family
CLFO_RS04380	PF04055	Radical SAM superfamily
CLFO_RS04380	PF12544	Lysine-2,3-aminomutase
CLFO_RS04390	PF12837	4Fe-4S binding domain
CLFO_RS04395	PF00342	Phosphoglucose isomerase
CLFO_RS04400	PF01177	Asp/Glu/Hydantoin racemase
CLFO_RS04405	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS04405	PF06580	CLFO_RS04405
CLFO_RS04405	PF07694	5TMR of 5TMR-LYT
CLFO_RS04410	PF00072	Response regulator receiver domain
CLFO_RS04410	PF04397	LytTr DNA-binding domain
CLFO_RS04415	PF07615	YKOF-related Family
CLFO_RS04425	PF01943	CLFO_RS04425
CLFO_RS04425	PF14667	Polysaccharide biosynthesis C-terminal domain
CLFO_RS04430	PF04205	FMN-binding domain
CLFO_RS04440	PF03477	ATP cone domain
CLFO_RS04440	PF13597	Anaerobic ribonucleoside-triphosphate reductase
CLFO_RS04445	PF00027	Cyclic nucleotide-binding domain
CLFO_RS04445	PF13545	Crp-like helix-turn-helix domain
CLFO_RS04450	PF01226	Formate/nitrite transporter
CLFO_RS04455	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS04455	PF01434	Peptidase family M41
CLFO_RS04455	PF04011	LemA family
CLFO_RS04460	PF04023	FeoA domain
CLFO_RS04465	PF02421	Ferrous iron transport protein B
CLFO_RS04465	PF07664	CLFO_RS04465
CLFO_RS04465	PF07670	Nucleoside recognition
CLFO_RS04470	PF12671	CLFO_RS04470
CLFO_RS04475	PF13489	Methyltransferase domain
CLFO_RS04480	PF00581	Rhodanese-like domain
CLFO_RS04480	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CLFO_RS04480	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS04485	PF04055	Radical SAM superfamily
CLFO_RS04485	PF13353	4Fe-4S single cluster domain
CLFO_RS04490	PF09084	NMT1/THI5 like
CLFO_RS04505	PF00133	tRNA synthetases class I (I, L, M and V)
CLFO_RS04505	PF08264	Anticodon-binding domain of tRNA
CLFO_RS04505	PF10458	Valyl tRNA synthetase tRNA binding arm
CLFO_RS04510	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS04510	PF08245	Mur ligase middle domain
CLFO_RS04515	PF14277	Domain of unknown function (DUF4364)
CLFO_RS04520	PF07870	CLFO_RS04520
CLFO_RS04525	PF04239	Protein of unknown function (DUF421)
CLFO_RS04525	PF07870	CLFO_RS04525
CLFO_RS04530	PF03862	CLFO_RS04530
CLFO_RS04535	PF07451	Stage V sporulation protein AD (SpoVAD)
CLFO_RS04540	PF03862	CLFO_RS04540
CLFO_RS04545	PF07870	CLFO_RS04545
CLFO_RS04550	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS04565	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CLFO_RS04565	PF02663	FmdE, Molybdenum formylmethanofuran dehydrogenase operon
CLFO_RS04570	PF13847	Methyltransferase domain
CLFO_RS04575	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS04580	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS04585	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS04590	PF00005	ABC transporter
CLFO_RS04590	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS04595	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
CLFO_RS04595	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CLFO_RS04600	PF02690	CLFO_RS04600
CLFO_RS04605	PF02632	BioY family
CLFO_RS04610	PF01522	Polysaccharide deacetylase
CLFO_RS04615	PF01225	Mur ligase family, catalytic domain
CLFO_RS04615	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS04615	PF08245	Mur ligase middle domain
CLFO_RS04620	PF00436	Single-strand binding protein family
CLFO_RS04625	PF01814	Hemerythrin HHE cation binding domain
CLFO_RS04630	PF07670	Nucleoside recognition
CLFO_RS04640	PF00120	Glutamine synthetase, catalytic domain
CLFO_RS04640	PF03951	Glutamine synthetase, beta-Grasp domain
CLFO_RS04650	PF00005	ABC transporter
CLFO_RS04650	PF00664	ABC transporter transmembrane region
CLFO_RS04655	PF00877	NlpC/P60 family
CLFO_RS04670	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS04670	PF07730	Histidine kinase
CLFO_RS04675	PF00072	Response regulator receiver domain
CLFO_RS04675	PF00196	Bacterial regulatory proteins, luxR family
CLFO_RS04680	PF00890	FAD binding domain
CLFO_RS04685	PF04205	FMN-binding domain
CLFO_RS04690	PF03795	YCII-related domain
CLFO_RS04695	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS04695	PF00672	HAMP domain
CLFO_RS04695	PF02743	Cache domain
CLFO_RS04705	PF00149	Calcineurin-like phosphoesterase
CLFO_RS04715	PF03050	CLFO_RS04715
CLFO_RS04715	PF13005	CLFO_RS04715
CLFO_RS04720	PF05717	CLFO_RS04720
CLFO_RS04730	PF01757	CLFO_RS04730
CLFO_RS04740	PF01695	IstB-like ATP binding protein
CLFO_RS04745	PF00698	Acyl transferase domain
CLFO_RS04750	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS04755	PF00698	Acyl transferase domain
CLFO_RS04765	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04765	PF00550	Phosphopantetheine attachment site
CLFO_RS04765	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04765	PF08659	KR domain
CLFO_RS04765	PF14765	Polyketide synthase dehydratase
CLFO_RS04765	PF16197	CLFO_RS04765
CLFO_RS04770	PF00550	Phosphopantetheine attachment site
CLFO_RS04770	PF00668	Condensation domain
CLFO_RS04770	PF08415	CLFO_RS04770
CLFO_RS04775	PF00501	AMP-binding enzyme
CLFO_RS04775	PF00550	Phosphopantetheine attachment site
CLFO_RS04775	PF13193	AMP-binding enzyme C-terminal domain
CLFO_RS04780	PF01695	IstB-like ATP binding protein
CLFO_RS04785	PF00665	Integrase core domain
CLFO_RS04790	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04790	PF00550	Phosphopantetheine attachment site
CLFO_RS04790	PF00881	Nitroreductase family
CLFO_RS04790	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04790	PF08659	KR domain
CLFO_RS04790	PF16197	CLFO_RS04790
CLFO_RS04795	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04795	PF00550	Phosphopantetheine attachment site
CLFO_RS04795	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04795	PF08659	KR domain
CLFO_RS04795	PF14765	Polyketide synthase dehydratase
CLFO_RS04795	PF16197	CLFO_RS04795
CLFO_RS04800	PF08659	KR domain
CLFO_RS04805	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04810	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04810	PF16197	CLFO_RS04810
CLFO_RS04815	PF08659	KR domain
CLFO_RS04820	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04825	PF16197	CLFO_RS04825
CLFO_RS04830	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04830	PF00550	Phosphopantetheine attachment site
CLFO_RS04830	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04830	PF08659	KR domain
CLFO_RS04830	PF14765	Polyketide synthase dehydratase
CLFO_RS04830	PF16197	CLFO_RS04830
CLFO_RS04835	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04835	PF00550	Phosphopantetheine attachment site
CLFO_RS04835	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04835	PF08659	KR domain
CLFO_RS04835	PF14765	Polyketide synthase dehydratase
CLFO_RS04835	PF16197	CLFO_RS04835
CLFO_RS04840	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS04840	PF00550	Phosphopantetheine attachment site
CLFO_RS04840	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS04840	PF07993	Male sterility protein
CLFO_RS04840	PF08659	KR domain
CLFO_RS04840	PF14765	Polyketide synthase dehydratase
CLFO_RS04840	PF16197	CLFO_RS04840
CLFO_RS04845	PF01648	4'-phosphopantetheinyl transferase superfamily
CLFO_RS04850	PF02357	Transcription termination factor nusG
CLFO_RS04855	PF00395	S-layer homology domain
CLFO_RS04860	PF01906	Putative heavy-metal-binding
CLFO_RS04865	PF04024	CLFO_RS04865
CLFO_RS04870	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS04875	PF09819	CLFO_RS04875
CLFO_RS04880	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
CLFO_RS04885	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS04890	PF00005	ABC transporter
CLFO_RS04895	PF00005	ABC transporter
CLFO_RS04900	PF02361	Cobalt transport protein
CLFO_RS04905	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
CLFO_RS04910	PF01163	RIO1 family
CLFO_RS04915	PF00005	ABC transporter
CLFO_RS04920	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS04925	PF12849	PBP superfamily domain
CLFO_RS04930	PF01497	Periplasmic binding protein
CLFO_RS04935	PF01032	FecCD transport family
CLFO_RS04940	PF00005	ABC transporter
CLFO_RS04945	PF04016	Domain of unknown function (DUF364)
CLFO_RS04945	PF13938	Domain of unknown function (DUF4213)
CLFO_RS04950	PF01325	Iron dependent repressor, N-terminal DNA binding domain
CLFO_RS04950	PF02742	Iron dependent repressor, metal binding and dimerisation domain
CLFO_RS04955	PF04023	FeoA domain
CLFO_RS04960	PF02421	Ferrous iron transport protein B
CLFO_RS04960	PF07664	CLFO_RS04960
CLFO_RS04960	PF07670	Nucleoside recognition
CLFO_RS04965	PF00455	CLFO_RS04965
CLFO_RS04965	PF08220	DeoR-like helix-turn-helix domain
CLFO_RS04970	PF07005	Protein of unknown function, DUF1537
CLFO_RS04970	PF17042	CLFO_RS04970
CLFO_RS04975	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
CLFO_RS04980	PF02447	CLFO_RS04980
CLFO_RS04985	PF11823	CLFO_RS04985
CLFO_RS04990	PF01206	Sulfurtransferase TusA
CLFO_RS04995	PF04143	CLFO_RS04995
CLFO_RS05000	PF02245	Methylpurine-DNA glycosylase (MPG)
CLFO_RS05005	PF01553	Acyltransferase
CLFO_RS05010	PF00795	Carbon-nitrogen hydrolase
CLFO_RS05015	PF01476	LysM domain
CLFO_RS05015	PF07486	Cell Wall Hydrolase
CLFO_RS05020	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CLFO_RS05020	PF02774	Semialdehyde dehydrogenase, dimerisation domain
CLFO_RS05025	PF00701	Dihydrodipicolinate synthetase family
CLFO_RS05030	PF01113	Dihydrodipicolinate reductase, N-terminus
CLFO_RS05030	PF05173	Dihydrodipicolinate reductase, C-terminus
CLFO_RS05035	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS05035	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
CLFO_RS05035	PF14602	Hexapeptide repeat of succinyl-transferase
CLFO_RS05040	PF00696	Amino acid kinase family
CLFO_RS05040	PF13840	ACT domain
CLFO_RS05045	PF00202	Aminotransferase class-III
CLFO_RS05055	PF02001	CLFO_RS05055
CLFO_RS05060	PF00155	Aminotransferase class I and II
CLFO_RS05060	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS05065	PF03063	Prismane/CO dehydrogenase family
CLFO_RS05070	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS05070	PF02743	Cache domain
CLFO_RS05075	PF02810	SEC-C motif
CLFO_RS05080	PF08495	CLFO_RS05080
CLFO_RS05080	PF10442	CLFO_RS05080
CLFO_RS05085	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS05090	PF01966	HD domain
CLFO_RS05095	PF00117	Glutamine amidotransferase class-I
CLFO_RS05100	PF00425	chorismate binding enzyme
CLFO_RS05100	PF04715	Anthranilate synthase component I, N terminal region
CLFO_RS05105	PF01063	Aminotransferase class IV
CLFO_RS05110	PF01227	GTP cyclohydrolase I
CLFO_RS05115	PF00809	Pterin binding enzyme
CLFO_RS05120	PF02152	Dihydroneopterin aldolase
CLFO_RS05125	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
CLFO_RS05130	PF00793	DAHP synthetase I family
CLFO_RS05135	PF11738	Protein of unknown function (DUF3298)
CLFO_RS05135	PF13739	Domain of unknown function (DUF4163)
CLFO_RS05140	PF03054	tRNA methyl transferase
CLFO_RS05145	PF01256	Carbohydrate kinase
CLFO_RS05145	PF03853	YjeF-related protein N-terminus
CLFO_RS05150	PF11007	CLFO_RS05150
CLFO_RS05155	PF12652	CLFO_RS05155
CLFO_RS05160	PF05067	Manganese containing catalase
CLFO_RS05165	PF13367	CLFO_RS05165
CLFO_RS05175	PF11009	Protein of unknown function (DUF2847)
CLFO_RS05180	PF00717	Peptidase S24-like
CLFO_RS05185	PF00571	CBS domain
CLFO_RS05190	PF00381	PTS HPr component phosphorylation site
CLFO_RS05195	PF00485	Phosphoribulokinase / Uridine kinase family
CLFO_RS05200	PF04306	CLFO_RS05200
CLFO_RS05205	PF00892	EamA-like transporter family
CLFO_RS05210	PF00717	Peptidase S24-like
CLFO_RS05215	PF08331	CLFO_RS05215
CLFO_RS05215	PF13484	CLFO_RS05215
CLFO_RS05220	PF05362	Lon protease (S16) C-terminal proteolytic domain
CLFO_RS05220	PF13654	AAA domain
CLFO_RS05225	PF00155	Aminotransferase class I and II
CLFO_RS05230	PF16576	CLFO_RS05230
CLFO_RS05235	PF00873	AcrB/AcrD/AcrF family
CLFO_RS05240	PF04456	Protein of unknown function (DUF503)
CLFO_RS05245	PF00633	Helix-hairpin-helix motif
CLFO_RS05245	PF00730	HhH-GPD superfamily base excision DNA repair protein
CLFO_RS05250	PF14450	Cell division protein FtsA
CLFO_RS05255	PF04294	CLFO_RS05255
CLFO_RS05255	PF07501	G5 domain
CLFO_RS05255	PF12229	Putative peptidoglycan binding domain
CLFO_RS05260	PF09986	CLFO_RS05260
CLFO_RS05265	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
CLFO_RS05265	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
CLFO_RS05270	PF02450	Lecithin:cholesterol acyltransferase
CLFO_RS05275	PF00188	Cysteine-rich secretory protein family
CLFO_RS05275	PF14504	CAP-associated N-terminal
CLFO_RS05280	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
CLFO_RS05285	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
CLFO_RS05290	PF02654	CLFO_RS05290
CLFO_RS05295	PF00300	Histidine phosphatase superfamily (branch 1)
CLFO_RS05300	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS05300	PF07685	CobB/CobQ-like glutamine amidotransferase domain
CLFO_RS05305	PF03186	CLFO_RS05305
CLFO_RS05310	PF00155	Aminotransferase class I and II
CLFO_RS05315	PF01475	Ferric uptake regulator family
CLFO_RS05320	PF01797	Transposase IS200 like
CLFO_RS05325	PF01385	CLFO_RS05325
CLFO_RS05325	PF07282	CLFO_RS05325
CLFO_RS05325	PF12323	CLFO_RS05325
CLFO_RS05330	PF08282	haloacid dehalogenase-like hydrolase
CLFO_RS05335	PF04015	CLFO_RS05335
CLFO_RS05340	PF04015	CLFO_RS05340
CLFO_RS05345	PF02645	Uncharacterised protein, DegV family COG1307
CLFO_RS05350	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS05355	PF06177	CLFO_RS05355
CLFO_RS05360	PF00892	EamA-like transporter family
CLFO_RS05365	PF00156	Phosphoribosyl transferase domain
CLFO_RS05370	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS05370	PF08503	Tetrahydrodipicolinate succinyltransferase N-terminal
CLFO_RS05370	PF14602	Hexapeptide repeat of succinyl-transferase
CLFO_RS05375	PF01546	Peptidase family M20/M25/M40
CLFO_RS05375	PF07687	Peptidase dimerisation domain
CLFO_RS05380	PF02517	CAAX protease self-immunity
CLFO_RS05385	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS05390	PF00313	'Cold-shock' DNA-binding domain
CLFO_RS05395	PF01430	Hsp33 protein
CLFO_RS05420	PF01842	ACT domain
CLFO_RS05420	PF10369	Small subunit of acetolactate synthase
CLFO_RS05425	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
CLFO_RS05425	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
CLFO_RS05430	PF00682	HMGL-like
CLFO_RS05430	PF08502	LeuA allosteric (dimerisation) domain
CLFO_RS05435	PF00682	HMGL-like
CLFO_RS05435	PF08502	LeuA allosteric (dimerisation) domain
CLFO_RS05440	PF00330	Aconitase family (aconitate hydratase)
CLFO_RS05445	PF00694	Aconitase C-terminal domain
CLFO_RS05450	PF00180	Isocitrate/isopropylmalate dehydrogenase
CLFO_RS05455	PF00205	Thiamine pyrophosphate enzyme, central domain
CLFO_RS05455	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS05455	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CLFO_RS05460	PF03063	Prismane/CO dehydrogenase family
CLFO_RS05465	PF02082	Transcriptional regulator
CLFO_RS05475	PF08812	CLFO_RS05475
CLFO_RS05480	PF04286	CLFO_RS05480
CLFO_RS05485	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CLFO_RS05485	PF02824	TGS domain
CLFO_RS05485	PF03129	Anticodon binding domain
CLFO_RS05485	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CLFO_RS05490	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS05490	PF01434	Peptidase family M41
CLFO_RS05495	PF00707	Translation initiation factor IF-3, C-terminal domain
CLFO_RS05495	PF05198	Translation initiation factor IF-3, N-terminal domain
CLFO_RS05500	PF01632	Ribosomal protein L35
CLFO_RS05505	PF00453	Ribosomal protein L20
CLFO_RS05510	PF02386	Cation transport protein
CLFO_RS05515	PF02080	TrkA-C domain
CLFO_RS05515	PF02254	TrkA-N domain
CLFO_RS05520	PF00588	SpoU rRNA Methylase family
CLFO_RS05520	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CLFO_RS05525	PF01409	tRNA synthetases class II core domain (F)
CLFO_RS05525	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
CLFO_RS05530	PF01588	Putative tRNA binding domain
CLFO_RS05530	PF03147	Ferredoxin-fold anticodon binding domain
CLFO_RS05530	PF03483	B3/4 domain
CLFO_RS05530	PF03484	tRNA synthetase B5 domain
CLFO_RS05535	PF05164	Cell division protein ZapA
CLFO_RS05540	PF01136	CLFO_RS05540
CLFO_RS05540	PF12392	CLFO_RS05540
CLFO_RS05545	PF00579	tRNA synthetases class I (W and Y)
CLFO_RS05545	PF01479	S4 domain
CLFO_RS05550	PF01966	HD domain
CLFO_RS05555	PF00933	Glycosyl hydrolase family 3 N terminal domain
CLFO_RS05560	PF00860	Permease family
CLFO_RS05565	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS05565	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS05565	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS05565	PF10371	Domain of unknown function
CLFO_RS05565	PF13484	CLFO_RS05565
CLFO_RS05565	PF17147	CLFO_RS05565
CLFO_RS05570	PF12655	CLFO_RS05570
CLFO_RS05575	PF04018	CLFO_RS05575
CLFO_RS05580	PF05193	Peptidase M16 inactive domain
CLFO_RS05580	PF08367	Peptidase M16C associated
CLFO_RS05585	PF03063	Prismane/CO dehydrogenase family
CLFO_RS05590	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS05595	PF01268	Formate--tetrahydrofolate ligase
CLFO_RS05600	PF04961	Formiminotransferase-cyclodeaminase
CLFO_RS05605	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CLFO_RS05605	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
CLFO_RS05610	PF12225	CLFO_RS05610
CLFO_RS05615	PF02219	Methylenetetrahydrofolate reductase
CLFO_RS05620	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
CLFO_RS05620	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS05625	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS05630	PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
CLFO_RS05635	PF03599	CO dehydrogenase/acetyl-CoA synthase delta subunit
CLFO_RS05635	PF04060	Putative Fe-S cluster
CLFO_RS05640	PF00809	Pterin binding enzyme
CLFO_RS05645	PF03598	CO dehydrogenase/acetyl-CoA synthase complex beta subunit
CLFO_RS05650	PF01597	Glycine cleavage H-protein
CLFO_RS05655	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS05655	PF14574	Domain of unknown function (DUF4445)
CLFO_RS05660	PF02906	Iron only hydrogenase large subunit, C-terminal domain
CLFO_RS05660	PF04060	Putative Fe-S cluster
CLFO_RS05660	PF12838	4Fe-4S dicluster domain
CLFO_RS05665	PF07228	Stage II sporulation protein E (SpoIIE)
CLFO_RS05670	PF12654	CLFO_RS05670
CLFO_RS05680	PF12953	CLFO_RS05680
CLFO_RS05685	PF10133	CLFO_RS05685
CLFO_RS05690	PF04060	Putative Fe-S cluster
CLFO_RS05695	PF03099	Biotin/lipoate A/B protein ligase family
CLFO_RS05700	PF04055	Radical SAM superfamily
CLFO_RS05705	PF03358	NADPH-dependent FMN reductase
CLFO_RS05710	PF00056	lactate/malate dehydrogenase, NAD binding domain
CLFO_RS05715	PF01467	Cytidylyltransferase
CLFO_RS05720	PF03734	L,D-transpeptidase catalytic domain
CLFO_RS05725	PF01881	CRISPR associated protein Cas6
CLFO_RS05735	PF05107	CLFO_RS05735
CLFO_RS05745	PF00270	DEAD/DEAH box helicase
CLFO_RS05745	PF00271	Helicase conserved C-terminal domain
CLFO_RS05750	PF01930	Domain of unknown function DUF83
CLFO_RS05755	PF01867	CRISPR associated protein Cas1
CLFO_RS05760	PF09827	CRISPR associated protein Cas2
CLFO_RS05765	PF00488	MutS domain V
CLFO_RS05765	PF01713	Smr domain
CLFO_RS05770	PF04463	CLFO_RS05770
CLFO_RS05775	PF00072	Response regulator receiver domain
CLFO_RS05775	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS05780	PF00072	Response regulator receiver domain
CLFO_RS05780	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS05780	PF01627	Hpt domain
CLFO_RS05780	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS05785	PF00072	Response regulator receiver domain
CLFO_RS05785	PF12833	Helix-turn-helix domain
CLFO_RS05790	PF13433	Periplasmic binding protein domain
CLFO_RS05795	PF02653	CLFO_RS05795
CLFO_RS05800	PF02653	CLFO_RS05800
CLFO_RS05805	PF00005	ABC transporter
CLFO_RS05805	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CLFO_RS05810	PF00005	ABC transporter
CLFO_RS05815	PF00547	Urease, gamma subunit
CLFO_RS05820	PF00699	Urease beta subunit
CLFO_RS05825	PF00449	Urease alpha-subunit, N-terminal domain
CLFO_RS05825	PF01979	Amidohydrolase family
CLFO_RS05830	PF00750	tRNA synthetases class I (R)
CLFO_RS05830	PF03485	Arginyl tRNA synthetase N terminal domain
CLFO_RS05830	PF05746	DALR anticodon binding domain
CLFO_RS05835	PF03747	ADP-ribosylglycohydrolase
CLFO_RS05845	PF00882	Zinc dependent phospholipase C
CLFO_RS05850	PF02310	B12 binding domain
CLFO_RS05850	PF04055	Radical SAM superfamily
CLFO_RS05850	PF13311	CLFO_RS05850
CLFO_RS05860	PF13181	Tetratricopeptide repeat
CLFO_RS05860	PF13424	Tetratricopeptide repeat
CLFO_RS05865	PF00994	Probable molybdopterin binding domain
CLFO_RS05870	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS05870	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLFO_RS05870	PF01799	[2Fe-2S] binding domain
CLFO_RS05870	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
CLFO_RS05875	PF02754	CLFO_RS05875
CLFO_RS05875	PF13450	NAD(P)-binding Rossmann-like domain
CLFO_RS05875	PF13534	4Fe-4S dicluster domain
CLFO_RS05875	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CLFO_RS05885	PF08241	Methyltransferase domain
CLFO_RS05890	PF09719	Putative redox-active protein (C_GCAxxG_C_C)
CLFO_RS05895	PF04055	Radical SAM superfamily
CLFO_RS05895	PF13353	4Fe-4S single cluster domain
CLFO_RS05900	PF00501	AMP-binding enzyme
CLFO_RS05905	PF02625	XdhC and CoxI family
CLFO_RS05905	PF13478	XdhC Rossmann domain
CLFO_RS05910	PF01966	HD domain
CLFO_RS05910	PF12804	MobA-like NTP transferase domain
CLFO_RS05915	PF00300	Histidine phosphatase superfamily (branch 1)
CLFO_RS05920	PF00158	Sigma-54 interaction domain
CLFO_RS05920	PF00989	PAS fold
CLFO_RS05920	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS05925	PF01515	Phosphate acetyl/butaryl transferase
CLFO_RS06030	PF01451	Low molecular weight phosphotyrosine protein phosphatase
CLFO_RS06035	PF08388	CLFO_RS06035
CLFO_RS06055	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS06060	PF07690	Major Facilitator Superfamily
CLFO_RS06065	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS06075	PF00072	Response regulator receiver domain
CLFO_RS06075	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS06080	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS06080	PF00672	HAMP domain
CLFO_RS06080	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS06090	PF07314	CLFO_RS06090
CLFO_RS06095	PF04246	CLFO_RS06095
CLFO_RS06100	PF08241	Methyltransferase domain
CLFO_RS06270	PF01212	Beta-eliminating lyase
CLFO_RS06290	PF12804	MobA-like NTP transferase domain
CLFO_RS06300	PF00994	Probable molybdopterin binding domain
CLFO_RS06305	PF00941	FAD binding domain in molybdopterin dehydrogenase
CLFO_RS06305	PF03450	CO dehydrogenase flavoprotein C-terminal domain
CLFO_RS06310	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS06310	PF01799	[2Fe-2S] binding domain
CLFO_RS06315	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLFO_RS06315	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
CLFO_RS06320	PF00860	Permease family
CLFO_RS06325	PF02627	Carboxymuconolactone decarboxylase family
CLFO_RS06330	PF10990	CLFO_RS06330
CLFO_RS06335	PF13789	CLFO_RS06335
CLFO_RS06340	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS06345	PF11213	Protein of unknown function (DUF3006)
CLFO_RS06355	PF07282	CLFO_RS06355
CLFO_RS06360	PF01047	MarR family
CLFO_RS06360	PF13673	Acetyltransferase (GNAT) domain
CLFO_RS06365	PF02558	Ketopantoate reductase PanE/ApbA
CLFO_RS06365	PF08546	Ketopantoate reductase PanE/ApbA C terminal
CLFO_RS06370	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS06370	PF00672	HAMP domain
CLFO_RS06370	PF12729	CLFO_RS06370
CLFO_RS06375	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS06375	PF12849	PBP superfamily domain
CLFO_RS06385	PF06808	CLFO_RS06385
CLFO_RS06385	PF11874	CLFO_RS06385
CLFO_RS06390	PF08905	CLFO_RS06390
CLFO_RS06395	PF16868	CLFO_RS06395
CLFO_RS06400	PF07286	Protein of unknown function (DUF1445)
CLFO_RS06405	PF14336	Domain of unknown function (DUF4392)
CLFO_RS06410	PF03746	LamB/YcsF family
CLFO_RS06415	PF02682	Allophanate hydrolase subunit 1
CLFO_RS06420	PF02626	Allophanate hydrolase subunit 2
CLFO_RS06425	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS06425	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS06430	PF00072	Response regulator receiver domain
CLFO_RS06430	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS06435	PF09359	VTC domain
CLFO_RS06440	PF16316	CLFO_RS06440
CLFO_RS06445	PF08757	CLFO_RS06445
CLFO_RS06450	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS06450	PF03466	LysR substrate binding domain
CLFO_RS06455	PF00390	Malic enzyme, N-terminal domain
CLFO_RS06455	PF03949	Malic enzyme, NAD binding domain
CLFO_RS06460	PF00158	Sigma-54 interaction domain
CLFO_RS06460	PF00989	PAS fold
CLFO_RS06460	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS06470	PF14196	CLFO_RS06470
CLFO_RS06475	PF03313	CLFO_RS06475
CLFO_RS06480	PF01042	Endoribonuclease L-PSP
CLFO_RS06485	PF02597	ThiS family
CLFO_RS06490	PF00899	ThiF family
CLFO_RS06495	PF14464	Prokaryotic homologs of the JAB domain
CLFO_RS06500	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CLFO_RS06500	PF01206	Sulfurtransferase TusA
CLFO_RS06500	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CLFO_RS06505	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS06515	PF00939	Sodium:sulfate symporter transmembrane region
CLFO_RS06520	PF01583	Adenylylsulphate kinase
CLFO_RS06525	PF00890	FAD binding domain
CLFO_RS06525	PF02910	Fumarate reductase flavoprotein C-term
CLFO_RS06530	PF13237	4Fe-4S dicluster domain
CLFO_RS06535	PF01507	Phosphoadenosine phosphosulfate reductase family
CLFO_RS06540	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS06545	PF16576	CLFO_RS06545
CLFO_RS06550	PF00873	AcrB/AcrD/AcrF family
CLFO_RS06555	PF12833	Helix-turn-helix domain
CLFO_RS06560	PF12146	Putative lysophospholipase
CLFO_RS06565	PF12833	Helix-turn-helix domain
CLFO_RS06570	PF04072	Leucine carboxyl methyltransferase
CLFO_RS06575	PF14512	Putative TM nitroreductase
CLFO_RS06580	PF04055	Radical SAM superfamily
CLFO_RS06580	PF06968	Biotin and Thiamin Synthesis associated domain
CLFO_RS06590	PF03744	CLFO_RS06590
CLFO_RS06595	PF00155	Aminotransferase class I and II
CLFO_RS06600	PF13500	AAA domain
CLFO_RS06605	PF00202	Aminotransferase class-III
CLFO_RS06610	PF04245	CLFO_RS06610
CLFO_RS06615	PF00206	Lyase
CLFO_RS06615	PF14698	Argininosuccinate lyase C-terminal
CLFO_RS06620	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS06620	PF07702	UTRA domain
CLFO_RS06625	PF16868	CLFO_RS06625
CLFO_RS06630	PF06808	CLFO_RS06630
CLFO_RS06640	PF06968	Biotin and Thiamin Synthesis associated domain
CLFO_RS06650	PF09660	CLFO_RS06650
CLFO_RS06650	PF09661	CLFO_RS06650
CLFO_RS06660	PF13558	Putative exonuclease SbcCD, C subunit
CLFO_RS06665	PF09664	CLFO_RS06665
CLFO_RS06665	PF11796	CLFO_RS06665
CLFO_RS06670	PF01145	SPFH domain / Band 7 family
CLFO_RS06675	PF01145	SPFH domain / Band 7 family
CLFO_RS06685	PF11369	CLFO_RS06685
CLFO_RS06690	PF09587	Bacterial capsule synthesis protein PGA_cap
CLFO_RS06695	PF00578	AhpC/TSA family
CLFO_RS06700	PF00578	AhpC/TSA family
CLFO_RS06705	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS06705	PF00672	HAMP domain
CLFO_RS06705	PF12729	CLFO_RS06705
CLFO_RS06710	PF02142	MGS-like domain
CLFO_RS06710	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CLFO_RS06710	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CLFO_RS06720	PF00293	NUDIX domain
CLFO_RS06725	PF02229	Transcriptional Coactivator p15 (PC4)
CLFO_RS06730	PF00356	Bacterial regulatory proteins, lacI family
CLFO_RS06730	PF13377	Periplasmic binding protein-like domain
CLFO_RS06735	PF00294	pfkB family carbohydrate kinase
CLFO_RS06740	PF02608	Basic membrane protein
CLFO_RS06745	PF00005	ABC transporter
CLFO_RS06750	PF02653	CLFO_RS06750
CLFO_RS06755	PF02653	CLFO_RS06755
CLFO_RS06760	PF01546	Peptidase family M20/M25/M40
CLFO_RS06760	PF07687	Peptidase dimerisation domain
CLFO_RS06765	PF07090	Protein of unknown function (DUF1355)
CLFO_RS06770	PF01546	Peptidase family M20/M25/M40
CLFO_RS06770	PF07687	Peptidase dimerisation domain
CLFO_RS06780	PF04237	YjbR
CLFO_RS06785	PF09719	Putative redox-active protein (C_GCAxxG_C_C)
CLFO_RS06800	PF02769	AIR synthase related protein, C-terminal domain
CLFO_RS06800	PF13507	CobB/CobQ-like glutamine amidotransferase domain
CLFO_RS06805	PF00455	CLFO_RS06805
CLFO_RS06805	PF08220	DeoR-like helix-turn-helix domain
CLFO_RS06810	PF00294	pfkB family carbohydrate kinase
CLFO_RS06815	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
CLFO_RS06820	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
CLFO_RS06820	PF02378	Phosphotransferase system, EIIC
CLFO_RS06825	PF00381	PTS HPr component phosphorylation site
CLFO_RS06830	PF00391	PEP-utilising enzyme, mobile domain
CLFO_RS06830	PF02896	PEP-utilising enzyme, TIM barrel domain
CLFO_RS06830	PF05524	PEP-utilising enzyme, N-terminal
CLFO_RS06835	PF00072	Response regulator receiver domain
CLFO_RS06835	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS06840	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS06840	PF00672	HAMP domain
CLFO_RS06840	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS06855	PF13407	Periplasmic binding protein domain
CLFO_RS06860	PF00563	EAL domain
CLFO_RS06860	PF00672	HAMP domain
CLFO_RS06860	PF00990	GGDEF domain
CLFO_RS06860	PF02743	Cache domain
CLFO_RS06865	PF00310	Glutamine amidotransferases class-II
CLFO_RS06865	PF01493	GXGXG motif
CLFO_RS06865	PF01645	Conserved region in glutamate synthase
CLFO_RS06865	PF04898	Glutamate synthase central domain
CLFO_RS06870	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS06870	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
CLFO_RS06875	PF00072	Response regulator receiver domain
CLFO_RS06875	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS06880	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS06880	PF00672	HAMP domain
CLFO_RS06880	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS06895	PF00005	ABC transporter
CLFO_RS06905	PF01814	Hemerythrin HHE cation binding domain
CLFO_RS06910	PF13690	Chemotaxis phosphatase CheX
CLFO_RS06915	PF00497	Bacterial extracellular solute-binding proteins, family 3
CLFO_RS06915	PF00563	EAL domain
CLFO_RS06915	PF00990	GGDEF domain
CLFO_RS06920	PF00270	DEAD/DEAH box helicase
CLFO_RS06920	PF00271	Helicase conserved C-terminal domain
CLFO_RS06920	PF00570	HRDC domain
CLFO_RS06920	PF09382	RQC domain
CLFO_RS06920	PF14493	CLFO_RS06920
CLFO_RS06920	PF16124	CLFO_RS06920
CLFO_RS06925	PF07690	Major Facilitator Superfamily
CLFO_RS06930	PF02540	NAD synthase
CLFO_RS06935	PF03595	Voltage-dependent anion channel
CLFO_RS06940	PF09719	Putative redox-active protein (C_GCAxxG_C_C)
CLFO_RS06945	PF06949	CLFO_RS06945
CLFO_RS06950	PF03547	CLFO_RS06950
CLFO_RS06955	PF12727	PBP superfamily domain
CLFO_RS06955	PF12728	Helix-turn-helix domain
CLFO_RS06960	PF13531	Bacterial extracellular solute-binding protein
CLFO_RS06965	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS06970	PF00005	ABC transporter
CLFO_RS06975	PF00142	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
CLFO_RS06980	PF00543	Nitrogen regulatory protein P-II
CLFO_RS06985	PF00543	Nitrogen regulatory protein P-II
CLFO_RS06990	PF00148	Nitrogenase component 1 type Oxidoreductase
CLFO_RS06995	PF00148	Nitrogenase component 1 type Oxidoreductase
CLFO_RS07000	PF00148	Nitrogenase component 1 type Oxidoreductase
CLFO_RS07005	PF00148	Nitrogenase component 1 type Oxidoreductase
CLFO_RS07010	PF02579	Dinitrogenase iron-molybdenum cofactor
CLFO_RS07010	PF04055	Radical SAM superfamily
CLFO_RS07015	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS07020	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS07020	PF00672	HAMP domain
CLFO_RS07020	PF17200	CLFO_RS07020
CLFO_RS07025	PF07883	Cupin domain
CLFO_RS07030	PF03479	Domain of unknown function (DUF296)
CLFO_RS07035	PF00313	'Cold-shock' DNA-binding domain
CLFO_RS07040	PF03006	CLFO_RS07040
CLFO_RS07045	PF04073	Aminoacyl-tRNA editing domain
CLFO_RS07050	PF00884	Sulfatase
CLFO_RS07055	PF02906	Iron only hydrogenase large subunit, C-terminal domain
CLFO_RS07055	PF04060	Putative Fe-S cluster
CLFO_RS07055	PF13237	4Fe-4S dicluster domain
CLFO_RS07060	PF00375	Sodium:dicarboxylate symporter family
CLFO_RS07065	PF01513	ATP-NAD kinase
CLFO_RS07070	PF00849	RNA pseudouridylate synthase
CLFO_RS07075	PF12788	CLFO_RS07075
CLFO_RS07085	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS07085	PF00395	S-layer homology domain
CLFO_RS07090	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS07090	PF00395	S-layer homology domain
CLFO_RS07095	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS07100	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS07100	PF04205	FMN-binding domain
CLFO_RS07115	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS07115	PF01434	Peptidase family M41
CLFO_RS07115	PF06480	FtsH Extracellular
CLFO_RS07120	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS07130	PF00994	Probable molybdopterin binding domain
CLFO_RS07130	PF03453	MoeA N-terminal region (domain I and II)
CLFO_RS07130	PF03454	MoeA C-terminal region (domain IV)
CLFO_RS07135	PF00994	Probable molybdopterin binding domain
CLFO_RS07135	PF03453	MoeA N-terminal region (domain I and II)
CLFO_RS07135	PF03454	MoeA C-terminal region (domain IV)
CLFO_RS07135	PF12727	PBP superfamily domain
CLFO_RS07140	PF03473	MOSC domain
CLFO_RS07145	PF02811	PHP domain
CLFO_RS07145	PF14520	Helix-hairpin-helix domain
CLFO_RS07145	PF14716	Helix-hairpin-helix domain
CLFO_RS07145	PF14791	DNA polymerase beta thumb
CLFO_RS07150	PF01943	CLFO_RS07150
CLFO_RS07150	PF14667	Polysaccharide biosynthesis C-terminal domain
CLFO_RS07155	PF00990	GGDEF domain
CLFO_RS07155	PF12651	CLFO_RS07155
CLFO_RS07170	PF02811	PHP domain
CLFO_RS07175	PF02274	Amidinotransferase
CLFO_RS07180	PF00005	ABC transporter
CLFO_RS07180	PF00664	ABC transporter transmembrane region
CLFO_RS07185	PF00005	ABC transporter
CLFO_RS07185	PF00664	ABC transporter transmembrane region
CLFO_RS07195	PF00155	Aminotransferase class I and II
CLFO_RS07195	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS07200	PF00781	Diacylglycerol kinase catalytic domain
CLFO_RS07205	PF00069	Protein kinase domain
CLFO_RS07205	PF00990	GGDEF domain
CLFO_RS07205	PF13181	Tetratricopeptide repeat
CLFO_RS07205	PF13191	AAA ATPase domain
CLFO_RS07205	PF13424	Tetratricopeptide repeat
CLFO_RS07210	PF03698	CLFO_RS07210
CLFO_RS07215	PF00221	Aromatic amino acid lyase
CLFO_RS07230	PF05979	Bacterial protein of unknown function (DUF896)
CLFO_RS07240	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS07240	PF05384	CLFO_RS07240
CLFO_RS07240	PF07730	Histidine kinase
CLFO_RS07245	PF00072	Response regulator receiver domain
CLFO_RS07245	PF00196	Bacterial regulatory proteins, luxR family
CLFO_RS07250	PF02645	Uncharacterised protein, DegV family COG1307
CLFO_RS07255	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS07255	PF03466	LysR substrate binding domain
CLFO_RS07260	PF01545	Cation efflux family
CLFO_RS07260	PF16916	CLFO_RS07260
CLFO_RS07270	PF00239	Resolvase, N terminal domain
CLFO_RS07270	PF07508	Recombinase
CLFO_RS07270	PF13408	Recombinase zinc beta ribbon domain
CLFO_RS07275	PF06114	Domain of unknown function (DUF955)
CLFO_RS07280	PF01381	Helix-turn-helix
CLFO_RS07285	PF01381	Helix-turn-helix
CLFO_RS07290	PF02498	CLFO_RS07290
CLFO_RS07300	PF04014	Antidote-toxin recognition MazE
CLFO_RS07325	PF03838	Recombination protein U
CLFO_RS07335	PF04542	Sigma-70 region 2
CLFO_RS07335	PF04545	Sigma-70, region 4
CLFO_RS07365	PF01844	HNH endonuclease
CLFO_RS07370	PF05119	CLFO_RS07370
CLFO_RS07375	PF03354	CLFO_RS07375
CLFO_RS07380	PF04860	Phage portal protein
CLFO_RS07385	PF00574	Clp protease
CLFO_RS07390	PF05065	Phage capsid family
CLFO_RS07395	PF05135	Phage gp6-like head-tail connector protein
CLFO_RS07400	PF05521	Phage head-tail joining protein
CLFO_RS07405	PF04883	CLFO_RS07405
CLFO_RS07415	PF04984	Phage tail sheath protein
CLFO_RS07420	PF09393	Protein of unknown function (DUF2001)
CLFO_RS07430	PF10145	CLFO_RS07430
CLFO_RS07445	PF10844	CLFO_RS07445
CLFO_RS07450	PF10934	CLFO_RS07450
CLFO_RS07455	PF04865	CLFO_RS07455
CLFO_RS07460	PF10076	CLFO_RS07460
CLFO_RS07470	PF01391	Collagen triple helix repeat (20 copies)
CLFO_RS07485	PF10960	CLFO_RS07485
CLFO_RS07490	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS07495	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS07500	PF16079	CLFO_RS07500
CLFO_RS07520	PF01844	HNH endonuclease
CLFO_RS07540	PF04307	CLFO_RS07540
CLFO_RS07545	PF04542	Sigma-70 region 2
CLFO_RS07545	PF08281	Sigma-70, region 4
CLFO_RS07550	PF13490	Putative zinc-finger
CLFO_RS07550	PF14257	CLFO_RS07550
CLFO_RS07560	PF00476	DNA polymerase family A
CLFO_RS07560	PF01367	5'-3' exonuclease, C-terminal SAM fold
CLFO_RS07560	PF01612	3'-5' exonuclease
CLFO_RS07560	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
CLFO_RS07565	PF01121	Dephospho-CoA kinase
CLFO_RS07570	PF01464	Transglycosylase SLT domain
CLFO_RS07575	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS07590	PF01695	IstB-like ATP binding protein
CLFO_RS07595	PF00665	Integrase core domain
CLFO_RS07600	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS07600	PF08388	CLFO_RS07600
CLFO_RS07605	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS07605	PF08388	CLFO_RS07605
CLFO_RS07610	PF11535	Calcium binding
CLFO_RS07615	PF02805	Metal binding domain of Ada
CLFO_RS07620	PF01894	Uncharacterised protein family UPF0047
CLFO_RS07625	PF11213	Protein of unknown function (DUF3006)
CLFO_RS07630	PF03235	CLFO_RS07630
CLFO_RS07630	PF07510	CLFO_RS07630
CLFO_RS07640	PF05626	CLFO_RS07640
CLFO_RS07640	PF08797	HIRAN domain
CLFO_RS07645	PF13612	CLFO_RS07645
CLFO_RS07685	PF00589	Phage integrase family
CLFO_RS07685	PF02899	Phage integrase, N-terminal SAM-like domain
CLFO_RS07695	PF12952	CLFO_RS07695
CLFO_RS07710	PF05133	Phage portal protein, SPP1 Gp6-like
CLFO_RS07715	PF04233	CLFO_RS07715
CLFO_RS07725	PF14265	CLFO_RS07725
CLFO_RS07740	PF13302	Acetyltransferase (GNAT) domain
CLFO_RS07765	PF05717	CLFO_RS07765
CLFO_RS07770	PF03050	CLFO_RS07770
CLFO_RS07770	PF13005	CLFO_RS07770
CLFO_RS07775	PF05717	CLFO_RS07775
CLFO_RS07780	PF13307	Helicase C-terminal domain
CLFO_RS07790	PF06114	Domain of unknown function (DUF955)
CLFO_RS07800	PF01758	Sodium Bile acid symporter family
CLFO_RS07810	PF00543	Nitrogen regulatory protein P-II
CLFO_RS07815	PF07556	CLFO_RS07815
CLFO_RS07820	PF01553	Acyltransferase
CLFO_RS07825	PF02156	Glycosyl hydrolase family 26
CLFO_RS07830	PF02639	CLFO_RS07830
CLFO_RS07835	PF02293	AmiS/UreI family transporter
CLFO_RS07900	PF00710	Asparaginase
CLFO_RS07905	PF02589	Uncharacterised ACR, YkgG family COG1556
CLFO_RS07910	PF00266	Aminotransferase class-V
CLFO_RS07915	PF02568	Thiamine biosynthesis protein (ThiI)
CLFO_RS07915	PF02926	THUMP domain
CLFO_RS07920	PF01967	MoaC family
CLFO_RS07925	PF00994	Probable molybdopterin binding domain
CLFO_RS07930	PF04055	Radical SAM superfamily
CLFO_RS07930	PF13353	4Fe-4S single cluster domain
CLFO_RS07935	PF01228	Glycine radical
CLFO_RS07935	PF02901	Pyruvate formate lyase
CLFO_RS07940	PF01740	STAS domain
CLFO_RS07945	PF13581	Histidine kinase-like ATPase domain
CLFO_RS07950	PF04539	Sigma-70 region 3
CLFO_RS07950	PF04542	Sigma-70 region 2
CLFO_RS07950	PF04545	Sigma-70, region 4
CLFO_RS07955	PF12164	Stage V sporulation protein AA
CLFO_RS07960	PF13782	CLFO_RS07960
CLFO_RS07965	PF03862	CLFO_RS07965
CLFO_RS07970	PF07451	Stage V sporulation protein AD (SpoVAD)
CLFO_RS07975	PF03862	CLFO_RS07975
CLFO_RS07980	PF14097	CLFO_RS07980
CLFO_RS07985	PF00905	Penicillin binding protein transpeptidase domain
CLFO_RS07985	PF00912	Transglycosylase
CLFO_RS07995	PF00239	Resolvase, N terminal domain
CLFO_RS07995	PF07508	Recombinase
CLFO_RS07995	PF13408	Recombinase zinc beta ribbon domain
CLFO_RS08005	PF03050	CLFO_RS08005
CLFO_RS08010	PF03050	CLFO_RS08010
CLFO_RS08010	PF13005	CLFO_RS08010
CLFO_RS08015	PF05717	CLFO_RS08015
CLFO_RS08025	PF13007	CLFO_RS08025
CLFO_RS08030	PF05717	CLFO_RS08030
CLFO_RS08045	PF06114	Domain of unknown function (DUF955)
CLFO_RS08060	PF01381	Helix-turn-helix
CLFO_RS08065	PF01381	Helix-turn-helix
CLFO_RS08075	PF01381	Helix-turn-helix
CLFO_RS08080	PF07261	Replication initiation and membrane attachment
CLFO_RS08085	PF01695	IstB-like ATP binding protein
CLFO_RS08135	PF10710	CLFO_RS08135
CLFO_RS08140	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS08150	PF09560	CLFO_RS08150
CLFO_RS08210	PF12900	Pyridoxamine 5'-phosphate oxidase
CLFO_RS08225	PF00239	Resolvase, N terminal domain
CLFO_RS08235	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS08240	PF00269	Small, acid-soluble spore proteins, alpha/beta type
CLFO_RS08245	PF01554	MatE
CLFO_RS08250	PF02311	AraC-like ligand binding domain
CLFO_RS08250	PF12833	Helix-turn-helix domain
CLFO_RS08255	PF01926	50S ribosome-binding GTPase
CLFO_RS08255	PF13167	CLFO_RS08255
CLFO_RS08255	PF16360	CLFO_RS08255
CLFO_RS08260	PF00293	NUDIX domain
CLFO_RS08265	PF01205	Uncharacterized protein family UPF0029
CLFO_RS08265	PF09186	Domain of unknown function (DUF1949)
CLFO_RS08270	PF13380	CoA binding domain
CLFO_RS08275	PF01925	CLFO_RS08275
CLFO_RS08280	PF01925	CLFO_RS08280
CLFO_RS08285	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS08290	PF02540	NAD synthase
CLFO_RS08295	PF01709	Transcriptional regulator
CLFO_RS08300	PF04073	Aminoacyl-tRNA editing domain
CLFO_RS08305	PF00704	Glycosyl hydrolases family 18
CLFO_RS08305	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS08310	PF07099	CLFO_RS08310
CLFO_RS08315	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS08320	PF13520	Amino acid permease
CLFO_RS08325	PF00202	Aminotransferase class-III
CLFO_RS08330	PF07905	CLFO_RS08330
CLFO_RS08330	PF13556	PucR C-terminal helix-turn-helix domain
CLFO_RS08335	PF01522	Polysaccharide deacetylase
CLFO_RS08345	PF02082	Transcriptional regulator
CLFO_RS08350	PF03063	Prismane/CO dehydrogenase family
CLFO_RS08355	PF13247	4Fe-4S dicluster domain
CLFO_RS08360	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS08365	PF02664	S-Ribosylhomocysteinase (LuxS)
CLFO_RS08370	PF00877	NlpC/P60 family
CLFO_RS08370	PF08239	Bacterial SH3 domain
CLFO_RS08375	PF01464	Transglycosylase SLT domain
CLFO_RS08385	PF07085	DRTGG domain
CLFO_RS08390	PF13581	Histidine kinase-like ATPase domain
CLFO_RS08395	PF07085	DRTGG domain
CLFO_RS08400	PF02811	PHP domain
CLFO_RS08405	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS08410	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS08410	PF10531	SLBB domain
CLFO_RS08410	PF13237	4Fe-4S dicluster domain
CLFO_RS08410	PF13375	RnfC Barrel sandwich hybrid domain
CLFO_RS08415	PF03116	CLFO_RS08415
CLFO_RS08420	PF04205	FMN-binding domain
CLFO_RS08425	PF02508	CLFO_RS08425
CLFO_RS08430	PF02508	CLFO_RS08430
CLFO_RS08435	PF00037	4Fe-4S binding domain
CLFO_RS08435	PF04060	Putative Fe-S cluster
CLFO_RS08435	PF13187	4Fe-4S dicluster domain
CLFO_RS08435	PF14697	4Fe-4S dicluster domain
CLFO_RS08440	PF07456	CLFO_RS08440
CLFO_RS08445	PF14209	CLFO_RS08445
CLFO_RS08450	PF02545	Maf-like protein
CLFO_RS08455	PF04002	RadC-like JAB domain
CLFO_RS08460	PF06723	MreB/Mbl protein
CLFO_RS08465	PF04085	rod shape-determining protein MreC
CLFO_RS08470	PF04093	CLFO_RS08470
CLFO_RS08475	PF00905	Penicillin binding protein transpeptidase domain
CLFO_RS08475	PF03717	Penicillin-binding Protein dimerisation domain
CLFO_RS08480	PF03775	Septum formation inhibitor MinC, C-terminal domain
CLFO_RS08485	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS08490	PF03776	Septum formation topological specificity factor MinE
CLFO_RS08495	PF02142	MGS-like domain
CLFO_RS08500	PF01551	Peptidase family M23
CLFO_RS08505	PF02163	Peptidase family M50
CLFO_RS08510	PF04055	Radical SAM superfamily
CLFO_RS08515	PF10105	CLFO_RS08515
CLFO_RS08520	PF10150	Ribonuclease E/G family
CLFO_RS08525	PF00829	Ribosomal prokaryotic L21 protein
CLFO_RS08530	PF04327	Protein of unknown function (DUF464)
CLFO_RS08535	PF01016	Ribosomal L27 protein
CLFO_RS08540	PF01018	GTP1/OBG
CLFO_RS08540	PF01926	50S ribosome-binding GTPase
CLFO_RS08540	PF09269	Domain of unknown function (DUF1967)
CLFO_RS08550	PF01985	CRS1 / YhbY (CRM) domain
CLFO_RS08555	PF03060	Nitronate monooxygenase
CLFO_RS08560	PF01467	Cytidylyltransferase
CLFO_RS08565	PF01966	HD domain
CLFO_RS08570	PF03816	Cell envelope-related transcriptional attenuator domain
CLFO_RS08570	PF13399	LytR cell envelope-related transcriptional attenuator
CLFO_RS08575	PF01699	Sodium/calcium exchanger protein
CLFO_RS08580	PF02410	Oligomerisation domain
CLFO_RS08585	PF00133	tRNA synthetases class I (I, L, M and V)
CLFO_RS08585	PF08264	Anticodon-binding domain of tRNA
CLFO_RS08585	PF09334	tRNA synthetases class I (M)
CLFO_RS08585	PF13603	Leucyl-tRNA synthetase, Domain 2
CLFO_RS08590	PF08348	CLFO_RS08590
CLFO_RS08590	PF13309	CLFO_RS08590
CLFO_RS08595	PF01042	Endoribonuclease L-PSP
CLFO_RS08600	PF01842	ACT domain
CLFO_RS08600	PF03315	Serine dehydratase beta chain
CLFO_RS08605	PF03313	CLFO_RS08605
CLFO_RS08610	PF00768	D-alanyl-D-alanine carboxypeptidase
CLFO_RS08610	PF07943	Penicillin-binding protein 5, C-terminal domain
CLFO_RS08615	PF10531	SLBB domain
CLFO_RS08615	PF12836	Helix-hairpin-helix motif
CLFO_RS08625	PF01235	CLFO_RS08625
CLFO_RS08630	PF03841	L-seryl-tRNA selenium transferase
CLFO_RS08630	PF12390	CLFO_RS08630
CLFO_RS08635	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS08635	PF03144	Elongation factor Tu domain 2
CLFO_RS08635	PF09106	Elongation factor SelB, winged helix
CLFO_RS08635	PF09107	Elongation factor SelB, winged helix
CLFO_RS08645	PF00589	Phage integrase family
CLFO_RS08650	PF13730	CLFO_RS08650
CLFO_RS08710	PF00665	Integrase core domain
CLFO_RS08715	PF01695	IstB-like ATP binding protein
CLFO_RS08740	PF01541	GIY-YIG catalytic domain
CLFO_RS08755	PF01844	HNH endonuclease
CLFO_RS08765	PF05119	CLFO_RS08765
CLFO_RS08770	PF03354	CLFO_RS08770
CLFO_RS08780	PF04860	Phage portal protein
CLFO_RS08785	PF04586	CLFO_RS08785
CLFO_RS08790	PF05065	Phage capsid family
CLFO_RS08795	PF05135	Phage gp6-like head-tail connector protein
CLFO_RS08800	PF05521	Phage head-tail joining protein
CLFO_RS08805	PF04883	CLFO_RS08805
CLFO_RS08810	PF11367	Protein of unknown function (DUF3168)
CLFO_RS08815	PF06199	CLFO_RS08815
CLFO_RS08830	PF10145	CLFO_RS08830
CLFO_RS08835	PF05709	Phage tail protein
CLFO_RS08840	PF10651	Domain of unknown function (DUF2479)
CLFO_RS08865	PF10960	CLFO_RS08865
CLFO_RS08870	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS08875	PF01381	Helix-turn-helix
CLFO_RS08880	PF01327	Polypeptide deformylase
CLFO_RS08885	PF04432	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
CLFO_RS08885	PF12838	4Fe-4S dicluster domain
CLFO_RS08890	PF00881	Nitroreductase family
CLFO_RS08895	PF04070	CLFO_RS08895
CLFO_RS08900	PF08955	BofC C-terminal domain
CLFO_RS08905	PF02075	Crossover junction endodeoxyribonuclease RuvC
CLFO_RS08910	PF01330	RuvA N terminal domain
CLFO_RS08910	PF07499	RuvA, C-terminal domain
CLFO_RS08910	PF14520	Helix-hairpin-helix domain
CLFO_RS08915	PF05491	Holliday junction DNA helicase ruvB C-terminus
CLFO_RS08915	PF05496	Holliday junction DNA helicase ruvB N-terminus
CLFO_RS08920	PF11146	CLFO_RS08920
CLFO_RS08925	PF08486	CLFO_RS08925
CLFO_RS08930	PF02547	Queuosine biosynthesis protein
CLFO_RS08935	PF01702	Queuine tRNA-ribosyltransferase
CLFO_RS08940	PF02699	Preprotein translocase subunit
CLFO_RS08945	PF12670	CLFO_RS08945
CLFO_RS08950	PF13165	CLFO_RS08950
CLFO_RS08955	PF04055	Radical SAM superfamily
CLFO_RS08955	PF13186	Iron-sulfur cluster-binding domain
CLFO_RS08955	PF13353	4Fe-4S single cluster domain
CLFO_RS08960	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS08965	PF02355	Protein export membrane protein
CLFO_RS08970	PF02355	Protein export membrane protein
CLFO_RS08970	PF07549	SecD/SecF GG Motif
CLFO_RS08975	PF03109	CLFO_RS08975
CLFO_RS08980	PF01368	DHH family
CLFO_RS08980	PF02272	DHHA1 domain
CLFO_RS08985	PF00156	Phosphoribosyl transferase domain
CLFO_RS08990	PF02824	TGS domain
CLFO_RS08990	PF04607	Region found in RelA / SpoT proteins
CLFO_RS08990	PF13291	ACT domain
CLFO_RS08990	PF13328	HD domain
CLFO_RS08995	PF02580	D-Tyr-tRNA(Tyr) deacylase
CLFO_RS09000	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS09005	PF04055	Radical SAM superfamily
CLFO_RS09010	PF00152	tRNA synthetases class II (D, K and N)
CLFO_RS09010	PF01336	OB-fold nucleic acid binding domain
CLFO_RS09010	PF02938	GAD domain
CLFO_RS09015	PF00395	S-layer homology domain
CLFO_RS09025	PF00899	ThiF family
CLFO_RS09030	PF04246	CLFO_RS09030
CLFO_RS09035	PF12821	CLFO_RS09035
CLFO_RS09040	PF06738	CLFO_RS09040
CLFO_RS09045	PF00464	Serine hydroxymethyltransferase
CLFO_RS09050	PF00158	Sigma-54 interaction domain
CLFO_RS09050	PF00989	PAS fold
CLFO_RS09050	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS09060	PF01113	Dihydrodipicolinate reductase, N-terminus
CLFO_RS09070	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS09075	PF16552	CLFO_RS09075
CLFO_RS09080	PF02310	B12 binding domain
CLFO_RS09080	PF09043	D-Lysine 5,6-aminomutase alpha subunit
CLFO_RS09080	PF16554	CLFO_RS09080
CLFO_RS09085	PF13941	CLFO_RS09085
CLFO_RS09090	PF01168	Alanine racemase, N-terminal domain
CLFO_RS09120	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS09120	PF12002	MgsA AAA+ ATPase C terminal
CLFO_RS09120	PF16193	CLFO_RS09120
CLFO_RS09125	PF11823	CLFO_RS09125
CLFO_RS09145	PF00188	Cysteine-rich secretory protein family
CLFO_RS09150	PF13692	Glycosyl transferases group 1
CLFO_RS09155	PF00534	Glycosyl transferases group 1
CLFO_RS09160	PF04321	RmlD substrate binding domain
CLFO_RS09165	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
CLFO_RS09165	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
CLFO_RS09165	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
CLFO_RS09170	PF00535	Glycosyl transferase family 2
CLFO_RS09175	PF11316	CLFO_RS09175
CLFO_RS09180	PF11316	CLFO_RS09180
CLFO_RS09185	PF00483	Nucleotidyl transferase
CLFO_RS09190	PF16363	CLFO_RS09190
CLFO_RS09195	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
CLFO_RS09200	PF13578	Methyltransferase domain
CLFO_RS09205	PF00535	Glycosyl transferase family 2
CLFO_RS09210	PF04765	CLFO_RS09210
CLFO_RS09220	PF13712	Glycosyltransferase like family
CLFO_RS09225	PF00069	Protein kinase domain
CLFO_RS09235	PF09682	CLFO_RS09235
CLFO_RS09240	PF02082	Transcriptional regulator
CLFO_RS09245	PF00266	Aminotransferase class-V
CLFO_RS09250	PF01592	NifU-like N terminal domain
CLFO_RS09255	PF03054	tRNA methyl transferase
CLFO_RS09265	PF01594	CLFO_RS09265
CLFO_RS09270	PF01411	tRNA synthetases class II (A)
CLFO_RS09270	PF02272	DHHA1 domain
CLFO_RS09270	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CLFO_RS09275	PF06135	CLFO_RS09275
CLFO_RS09285	PF00037	4Fe-4S binding domain
CLFO_RS09285	PF00248	Aldo/keto reductase family
CLFO_RS09290	PF03652	Uncharacterised protein family (UPF0081)
CLFO_RS09295	PF06949	CLFO_RS09295
CLFO_RS09305	PF03749	Sugar fermentation stimulation protein
CLFO_RS09310	PF01475	Ferric uptake regulator family
CLFO_RS09315	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS09315	PF07521	RNA-metabolising metallo-beta-lactamase
CLFO_RS09320	PF03956	CLFO_RS09320
CLFO_RS09325	PF03956	CLFO_RS09325
CLFO_RS09330	PF06133	Protein of unknown function (DUF964)
CLFO_RS09335	PF13411	MerR HTH family regulatory protein
CLFO_RS09340	PF05977	Transmembrane secretion effector
CLFO_RS09345	PF01476	LysM domain
CLFO_RS09350	PF01139	tRNA-splicing ligase RtcB
CLFO_RS09355	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS09355	PF01348	CLFO_RS09355
CLFO_RS09360	PF01139	tRNA-splicing ligase RtcB
CLFO_RS09375	PF03734	L,D-transpeptidase catalytic domain
CLFO_RS09380	PF14526	Integron-associated effector binding protein
CLFO_RS09385	PF06445	GyrI-like small molecule binding domain
CLFO_RS09385	PF13411	MerR HTH family regulatory protein
CLFO_RS09390	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
CLFO_RS09395	PF01625	Peptide methionine sulfoxide reductase
CLFO_RS09400	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
CLFO_RS09415	PF13518	Helix-turn-helix domain
CLFO_RS09430	PF12833	Helix-turn-helix domain
CLFO_RS09430	PF14526	Integron-associated effector binding protein
CLFO_RS09440	PF01625	Peptide methionine sulfoxide reductase
CLFO_RS09445	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS09445	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS09445	PF08447	PAS fold
CLFO_RS09445	PF14417	CLFO_RS09445
CLFO_RS09450	PF03965	Penicillinase repressor
CLFO_RS09455	PF05569	BlaR1 peptidase M56
CLFO_RS09460	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS09460	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS09465	PF00072	Response regulator receiver domain
CLFO_RS09465	PF08668	HDOD domain
CLFO_RS09470	PF00072	Response regulator receiver domain
CLFO_RS09475	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS09475	PF00989	PAS fold
CLFO_RS09475	PF01590	GAF domain
CLFO_RS09475	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS09480	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS09485	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS09490	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS09490	PF12911	CLFO_RS09490
CLFO_RS09495	PF00005	ABC transporter
CLFO_RS09500	PF00005	ABC transporter
CLFO_RS09505	PF00672	HAMP domain
CLFO_RS09505	PF06580	CLFO_RS09505
CLFO_RS09510	PF00072	Response regulator receiver domain
CLFO_RS09510	PF12833	Helix-turn-helix domain
CLFO_RS09515	PF01596	O-methyltransferase
CLFO_RS09520	PF01136	CLFO_RS09520
CLFO_RS09520	PF16325	CLFO_RS09520
CLFO_RS09525	PF00905	Penicillin binding protein transpeptidase domain
CLFO_RS09530	PF04542	Sigma-70 region 2
CLFO_RS09530	PF04545	Sigma-70, region 4
CLFO_RS09540	PF09419	CLFO_RS09540
CLFO_RS09545	PF08501	Shikimate dehydrogenase substrate binding domain
CLFO_RS09550	PF00437	Type II/IV secretion system protein
CLFO_RS09550	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
CLFO_RS09555	PF00437	Type II/IV secretion system protein
CLFO_RS09560	PF00482	Type II secretion system (T2SS), protein F
CLFO_RS09565	PF13633	Prokaryotic N-terminal methylation site
CLFO_RS09570	PF13544	CLFO_RS09570
CLFO_RS09585	PF01478	Type IV leader peptidase family
CLFO_RS09585	PF06750	CLFO_RS09585
CLFO_RS09590	PF11104	Type IV pilus assembly protein PilM;
CLFO_RS09595	PF05137	CLFO_RS09595
CLFO_RS09605	PF00395	S-layer homology domain
CLFO_RS09610	PF13544	CLFO_RS09610
CLFO_RS09620	PF13544	CLFO_RS09620
CLFO_RS09630	PF10719	CLFO_RS09630
CLFO_RS09635	PF01220	Dehydroquinase class II
CLFO_RS09640	PF00557	Metallopeptidase family M24
CLFO_RS09640	PF01321	Creatinase/Prolidase N-terminal domain
CLFO_RS09645	PF01132	Elongation factor P (EF-P) OB domain
CLFO_RS09645	PF08207	Elongation factor P (EF-P) KOW-like domain
CLFO_RS09645	PF09285	Elongation factor P, C-terminal
CLFO_RS09660	PF09548	CLFO_RS09660
CLFO_RS09665	PF06686	CLFO_RS09665
CLFO_RS09670	PF06686	CLFO_RS09670
CLFO_RS09675	PF09546	CLFO_RS09675
CLFO_RS09680	PF09581	CLFO_RS09680
CLFO_RS09690	PF12685	SpoIIIAH-like protein
CLFO_RS09695	PF03780	CLFO_RS09695
CLFO_RS09700	PF01029	NusB family
CLFO_RS09705	PF00814	Glycoprotease family
CLFO_RS09710	PF02601	CLFO_RS09710
CLFO_RS09710	PF13742	CLFO_RS09710
CLFO_RS09715	PF02609	Exonuclease VII small subunit
CLFO_RS09720	PF00348	Polyprenyl synthetase
CLFO_RS09725	PF02681	CLFO_RS09725
CLFO_RS09740	PF02779	Transketolase, pyrimidine binding domain
CLFO_RS09740	PF02780	Transketolase, C-terminal domain
CLFO_RS09740	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
CLFO_RS09745	PF01479	S4 domain
CLFO_RS09745	PF01728	FtsJ-like methyltransferase
CLFO_RS09750	PF01316	Arginine repressor, DNA binding domain
CLFO_RS09750	PF02863	Arginine repressor, C-terminal domain
CLFO_RS09755	PF02463	RecF/RecN/SMC N terminal domain
CLFO_RS09760	PF05580	CLFO_RS09760
CLFO_RS09765	PF00072	Response regulator receiver domain
CLFO_RS09765	PF08769	Sporulation initiation factor Spo0A C terminal
CLFO_RS09775	PF00929	Exonuclease
CLFO_RS09780	PF02631	RecX family
CLFO_RS09785	PF12555	CLFO_RS09785
CLFO_RS09790	PF11382	CLFO_RS09790
CLFO_RS09795	PF00535	Glycosyl transferase family 2
CLFO_RS09800	PF00953	Glycosyl transferase family 4
CLFO_RS09805	PF12982	CLFO_RS09805
CLFO_RS09810	PF00293	NUDIX domain
CLFO_RS09815	PF01944	CLFO_RS09815
CLFO_RS09820	PF00589	Phage integrase family
CLFO_RS09820	PF02899	Phage integrase, N-terminal SAM-like domain
CLFO_RS09825	PF01676	Metalloenzyme superfamily
CLFO_RS09830	PF01048	Phosphorylase superfamily
CLFO_RS09835	PF01048	Phosphorylase superfamily
CLFO_RS09840	PF00591	Glycosyl transferase family, a/b domain
CLFO_RS09840	PF02885	Glycosyl transferase family, helical bundle domain
CLFO_RS09840	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
CLFO_RS09845	PF00768	D-alanyl-D-alanine carboxypeptidase
CLFO_RS09845	PF07943	Penicillin-binding protein 5, C-terminal domain
CLFO_RS09850	PF00571	CBS domain
CLFO_RS09850	PF01368	DHH family
CLFO_RS09850	PF01743	Poly A polymerase head domain
CLFO_RS09850	PF12627	Probable RNA and SrmB- binding site of polymerase A
CLFO_RS09855	PF02163	Peptidase family M50
CLFO_RS09860	PF02616	ScpA/B protein
CLFO_RS09865	PF04079	Putative transcriptional regulators (Ypuh-like)
CLFO_RS09870	PF02675	S-adenosylmethionine decarboxylase
CLFO_RS09875	PF11167	CLFO_RS09875
CLFO_RS09880	PF09579	CLFO_RS09880
CLFO_RS09885	PF03819	MazG nucleotide pyrophosphohydrolase domain
CLFO_RS09890	PF00768	D-alanyl-D-alanine carboxypeptidase
CLFO_RS09890	PF07943	Penicillin-binding protein 5, C-terminal domain
CLFO_RS09900	PF01134	Glucose inhibited division protein A
CLFO_RS09905	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS09910	PF16576	CLFO_RS09910
CLFO_RS09915	PF00873	AcrB/AcrD/AcrF family
CLFO_RS09920	PF03851	UV-endonuclease UvdE
CLFO_RS09925	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS09925	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS09930	PF00072	Response regulator receiver domain
CLFO_RS09930	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS09935	PF00158	Sigma-54 interaction domain
CLFO_RS09945	PF01554	MatE
CLFO_RS09950	PF00521	DNA gyrase/topoisomerase IV, subunit A
CLFO_RS09955	PF00204	DNA gyrase B
CLFO_RS09955	PF00986	DNA gyrase B subunit, carboxyl terminus
CLFO_RS09955	PF01751	Toprim domain
CLFO_RS09955	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS09960	PF03812	CLFO_RS09960
CLFO_RS09965	PF04295	CLFO_RS09965
CLFO_RS09970	PF08666	SAF domain
CLFO_RS09975	PF00158	Sigma-54 interaction domain
CLFO_RS09975	PF00989	PAS fold
CLFO_RS09975	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS09975	PF06506	Propionate catabolism activator
CLFO_RS09980	PF01497	Periplasmic binding protein
CLFO_RS09985	PF00005	ABC transporter
CLFO_RS09990	PF01032	FecCD transport family
CLFO_RS09995	PF01032	FecCD transport family
CLFO_RS10000	PF12833	Helix-turn-helix domain
CLFO_RS10005	PF07870	CLFO_RS10005
CLFO_RS10010	PF00654	Voltage gated chloride channel
CLFO_RS10015	PF04239	Protein of unknown function (DUF421)
CLFO_RS10020	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS10025	PF00936	BMC domain
CLFO_RS10030	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS10030	PF10531	SLBB domain
CLFO_RS10030	PF13375	RnfC Barrel sandwich hybrid domain
CLFO_RS10030	PF13534	4Fe-4S dicluster domain
CLFO_RS10035	PF03319	Ethanolamine utilisation protein EutN/carboxysome
CLFO_RS10040	PF00171	Aldehyde dehydrogenase family
CLFO_RS10045	PF02441	Flavoprotein
CLFO_RS10050	PF11104	Type IV pilus assembly protein PilM;
CLFO_RS10055	PF06130	CLFO_RS10055
CLFO_RS10060	PF00936	BMC domain
CLFO_RS10065	PF00936	BMC domain
CLFO_RS10070	PF00936	BMC domain
CLFO_RS10075	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS10075	PF06580	CLFO_RS10075
CLFO_RS10075	PF10114	CLFO_RS10075
CLFO_RS10080	PF00072	Response regulator receiver domain
CLFO_RS10080	PF12833	Helix-turn-helix domain
CLFO_RS10085	PF04055	Radical SAM superfamily
CLFO_RS10085	PF13353	4Fe-4S single cluster domain
CLFO_RS10090	PF01228	Glycine radical
CLFO_RS10090	PF02901	Pyruvate formate lyase
CLFO_RS10095	PF00005	ABC transporter
CLFO_RS10105	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS10105	PF00672	HAMP domain
CLFO_RS10105	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS10110	PF00072	Response regulator receiver domain
CLFO_RS10110	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS10115	PF00005	ABC transporter
CLFO_RS10125	PF02687	CLFO_RS10125
CLFO_RS10125	PF12704	MacB-like periplasmic core domain
CLFO_RS10130	PF00529	HlyD family secretion protein
CLFO_RS10130	PF16576	CLFO_RS10130
CLFO_RS10135	PF12730	CLFO_RS10135
CLFO_RS10140	PF00005	ABC transporter
CLFO_RS10145	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS10150	PF03553	CLFO_RS10150
CLFO_RS10155	PF00589	Phage integrase family
CLFO_RS10160	PF05685	Putative restriction endonuclease
CLFO_RS10175	PF13700	CLFO_RS10175
CLFO_RS10180	PF00589	Phage integrase family
CLFO_RS10180	PF13495	Phage integrase, N-terminal SAM-like domain
CLFO_RS10200	PF00589	Phage integrase family
CLFO_RS10210	PF05685	Putative restriction endonuclease
CLFO_RS10225	PF04055	Radical SAM superfamily
CLFO_RS10230	PF02310	B12 binding domain
CLFO_RS10230	PF04055	Radical SAM superfamily
CLFO_RS10235	PF00891	O-methyltransferase
CLFO_RS10235	PF10050	CLFO_RS10235
CLFO_RS10235	PF16864	CLFO_RS10235
CLFO_RS10240	PF02277	Phosphoribosyltransferase
CLFO_RS10245	PF01964	ThiC family
CLFO_RS10250	PF01964	ThiC family
CLFO_RS10255	PF00589	Phage integrase family
CLFO_RS10260	PF00717	Peptidase S24-like
CLFO_RS10260	PF01726	LexA DNA binding domain
CLFO_RS10265	PF06838	Methionine gamma-lyase
CLFO_RS10280	PF01926	50S ribosome-binding GTPase
CLFO_RS10285	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS10295	PF01715	IPP transferase
CLFO_RS10300	PF01119	DNA mismatch repair protein, C-terminal domain
CLFO_RS10300	PF08676	MutL C terminal dimerisation domain
CLFO_RS10300	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS10305	PF00488	MutS domain V
CLFO_RS10305	PF01624	MutS domain I
CLFO_RS10305	PF05188	MutS domain II
CLFO_RS10305	PF05190	MutS family domain IV
CLFO_RS10305	PF05192	MutS domain III
CLFO_RS10310	PF00919	Uncharacterized protein family UPF0004
CLFO_RS10310	PF01938	TRAM domain
CLFO_RS10310	PF04055	Radical SAM superfamily
CLFO_RS10315	PF09682	CLFO_RS10315
CLFO_RS10325	PF01510	N-acetylmuramoyl-L-alanine amidase
CLFO_RS10325	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
CLFO_RS10325	PF05036	Sporulation related domain
CLFO_RS10330	PF10779	CLFO_RS10330
CLFO_RS10335	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS10340	PF05635	23S rRNA-intervening sequence protein
CLFO_RS10345	PF03781	Sulfatase-modifying factor enzyme 1
CLFO_RS10365	PF10076	CLFO_RS10365
CLFO_RS10370	PF04865	CLFO_RS10370
CLFO_RS10375	PF10934	CLFO_RS10375
CLFO_RS10390	PF01476	LysM domain
CLFO_RS10395	PF10145	CLFO_RS10395
CLFO_RS10400	PF08890	Phage XkdN-like protein
CLFO_RS10405	PF09393	Protein of unknown function (DUF2001)
CLFO_RS10410	PF04984	Phage tail sheath protein
CLFO_RS10445	PF09956	CLFO_RS10445
CLFO_RS10460	PF05133	Phage portal protein, SPP1 Gp6-like
CLFO_RS10465	PF04466	Phage terminase large subunit
CLFO_RS10480	PF01555	DNA methylase
CLFO_RS10480	PF02195	ParB-like nuclease domain
CLFO_RS10495	PF16784	CLFO_RS10495
CLFO_RS10525	PF00145	C-5 cytosine-specific DNA methylase
CLFO_RS10555	PF13392	HNH endonuclease
CLFO_RS10560	PF06356	CLFO_RS10560
CLFO_RS10560	PF09520	CLFO_RS10560
CLFO_RS10565	PF01695	IstB-like ATP binding protein
CLFO_RS10570	PF07261	Replication initiation and membrane attachment
CLFO_RS10570	PF13730	CLFO_RS10570
CLFO_RS10575	PF12706	Beta-lactamase superfamily domain
CLFO_RS10580	PF03837	CLFO_RS10580
CLFO_RS10590	PF13476	AAA domain
CLFO_RS10615	PF01381	Helix-turn-helix
CLFO_RS10620	PF00717	Peptidase S24-like
CLFO_RS10620	PF01381	Helix-turn-helix
CLFO_RS10635	PF00239	Resolvase, N terminal domain
CLFO_RS10635	PF07508	Recombinase
CLFO_RS10640	PF13487	HD domain
CLFO_RS10645	PF01255	Putative undecaprenyl diphosphate synthase
CLFO_RS10650	PF00155	Aminotransferase class I and II
CLFO_RS10655	PF13411	MerR HTH family regulatory protein
CLFO_RS10660	PF05343	M42 glutamyl aminopeptidase
CLFO_RS10665	PF05343	M42 glutamyl aminopeptidase
CLFO_RS10670	PF05343	M42 glutamyl aminopeptidase
CLFO_RS10675	PF01739	CheR methyltransferase, SAM binding domain
CLFO_RS10675	PF03705	CheR methyltransferase, all-alpha domain
CLFO_RS10680	PF00575	S1 RNA binding domain
CLFO_RS10685	PF02401	LytB protein
CLFO_RS10690	PF02224	Cytidylate kinase
CLFO_RS10700	PF00300	Histidine phosphatase superfamily (branch 1)
CLFO_RS10705	PF01380	SIS domain
CLFO_RS10705	PF01418	Helix-turn-helix domain, rpiR family
CLFO_RS10710	PF01975	Survival protein SurE
CLFO_RS10720	PF00682	HMGL-like
CLFO_RS10720	PF02436	Conserved carboxylase domain
CLFO_RS10725	PF06962	Putative rRNA methylase
CLFO_RS10730	PF00583	Acetyltransferase (GNAT) family
CLFO_RS10735	PF00849	RNA pseudouridylate synthase
CLFO_RS10735	PF01479	S4 domain
CLFO_RS10740	PF00152	tRNA synthetases class II (D, K and N)
CLFO_RS10740	PF01336	OB-fold nucleic acid binding domain
CLFO_RS10745	PF00206	Lyase
CLFO_RS10745	PF10397	Adenylosuccinate lyase C-terminus
CLFO_RS10750	PF00155	Aminotransferase class I and II
CLFO_RS10755	PF03551	Transcriptional regulator PadR-like family
CLFO_RS10760	PF02811	PHP domain
CLFO_RS10765	PF04232	Stage V sporulation protein S (SpoVS)
CLFO_RS10770	PF00013	KH domain
CLFO_RS10770	PF01966	HD domain
CLFO_RS10770	PF12072	CLFO_RS10770
CLFO_RS10775	PF00154	recA bacterial DNA recombination protein
CLFO_RS10780	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS10780	PF01348	CLFO_RS10780
CLFO_RS10790	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS10790	PF01844	HNH endonuclease
CLFO_RS10790	PF08388	CLFO_RS10790
CLFO_RS10790	PF13655	CLFO_RS10790
CLFO_RS10805	PF00154	recA bacterial DNA recombination protein
CLFO_RS10810	PF01066	CDP-alcohol phosphatidyltransferase
CLFO_RS10815	PF00919	Uncharacterized protein family UPF0004
CLFO_RS10815	PF01938	TRAM domain
CLFO_RS10815	PF04055	Radical SAM superfamily
CLFO_RS10820	PF00581	Rhodanese-like domain
CLFO_RS10825	PF01580	FtsK/SpoIIIE family
CLFO_RS10825	PF09397	Ftsk gamma domain
CLFO_RS10825	PF13491	CLFO_RS10825
CLFO_RS10830	PF00574	Clp protease
CLFO_RS10835	PF05239	PRC-barrel domain
CLFO_RS10840	PF00675	Insulinase (Peptidase family M16)
CLFO_RS10840	PF05193	Peptidase M16 inactive domain
CLFO_RS10845	PF01522	Polysaccharide deacetylase
CLFO_RS10850	PF00013	KH domain
CLFO_RS10850	PF00575	S1 RNA binding domain
CLFO_RS10850	PF01138	3' exoribonuclease family, domain 1
CLFO_RS10850	PF03725	3' exoribonuclease family, domain 2
CLFO_RS10850	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
CLFO_RS10855	PF00312	Ribosomal protein S15
CLFO_RS10860	PF01687	Riboflavin kinase
CLFO_RS10860	PF06574	FAD synthetase
CLFO_RS10865	PF01509	TruB family pseudouridylate synthase (N terminal domain)
CLFO_RS10865	PF16198	CLFO_RS10865
CLFO_RS10870	PF01368	DHH family
CLFO_RS10870	PF02272	DHHA1 domain
CLFO_RS10875	PF02033	Ribosome-binding factor A
CLFO_RS10880	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS10880	PF04760	Translation initiation factor IF-2, N-terminal region
CLFO_RS10880	PF11987	Translation-initiation factor 2
CLFO_RS10885	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
CLFO_RS10890	PF04296	Protein of unknown function (DUF448)
CLFO_RS10895	PF00575	S1 RNA binding domain
CLFO_RS10895	PF08529	NusA N-terminal domain
CLFO_RS10895	PF13184	NusA-like KH domain
CLFO_RS10900	PF02576	Uncharacterised BCR, YhbC family COG0779
CLFO_RS10905	PF00929	Exonuclease
CLFO_RS10905	PF01336	OB-fold nucleic acid binding domain
CLFO_RS10905	PF02811	PHP domain
CLFO_RS10905	PF07733	Bacterial DNA polymerase III alpha subunit
CLFO_RS10905	PF11490	CLFO_RS10905
CLFO_RS10905	PF14579	Helix-hairpin-helix motif
CLFO_RS10910	PF00535	Glycosyl transferase family 2
CLFO_RS10915	PF04551	GcpE protein
CLFO_RS10920	PF02163	Peptidase family M50
CLFO_RS10920	PF13180	PDZ domain
CLFO_RS10925	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
CLFO_RS10925	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
CLFO_RS10925	PF13288	DXP reductoisomerase C-terminal domain
CLFO_RS10930	PF01148	Cytidylyltransferase family
CLFO_RS10935	PF01255	Putative undecaprenyl diphosphate synthase
CLFO_RS10945	PF01765	Ribosome recycling factor
CLFO_RS10950	PF00696	Amino acid kinase family
CLFO_RS10955	PF00889	Elongation factor TS
CLFO_RS10960	PF00318	Ribosomal protein S2
CLFO_RS10980	PF03961	CLFO_RS10980
CLFO_RS10980	PF14804	Jag N-terminus
CLFO_RS10985	PF04539	Sigma-70 region 3
CLFO_RS10985	PF04542	Sigma-70 region 2
CLFO_RS10985	PF04545	Sigma-70, region 4
CLFO_RS10990	PF03975	CheD chemotactic sensory transduction
CLFO_RS10995	PF04509	CheC-like family
CLFO_RS11000	PF01584	CheW-like domain
CLFO_RS11005	PF01584	CheW-like domain
CLFO_RS11005	PF01627	Hpt domain
CLFO_RS11005	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS11005	PF02895	Signal transducing histidine kinase, homodimeric domain
CLFO_RS11005	PF07194	P2 response regulator binding domain
CLFO_RS11010	PF00072	Response regulator receiver domain
CLFO_RS11010	PF01339	CheB methylesterase
CLFO_RS11015	PF07238	PilZ domain
CLFO_RS11015	PF12945	Flagellar protein YcgR
CLFO_RS11020	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS11025	PF00448	SRP54-type protein, GTPase domain
CLFO_RS11030	PF00771	FHIPEP family
CLFO_RS11035	PF01312	FlhB HrpN YscU SpaS Family
CLFO_RS11040	PF01311	CLFO_RS11040
CLFO_RS11045	PF01313	CLFO_RS11045
CLFO_RS11050	PF00813	CLFO_RS11050
CLFO_RS11055	PF04347	CLFO_RS11055
CLFO_RS11060	PF00072	Response regulator receiver domain
CLFO_RS11065	PF01052	Surface presentation of antigens (SPOA)
CLFO_RS11065	PF04509	CheC-like family
CLFO_RS11070	PF01052	Surface presentation of antigens (SPOA)
CLFO_RS11070	PF02154	Flagellar motor switch protein FliM
CLFO_RS11075	PF03748	CLFO_RS11075
CLFO_RS11080	PF00691	OmpA family
CLFO_RS11080	PF13677	CLFO_RS11080
CLFO_RS11085	PF01618	CLFO_RS11085
CLFO_RS11090	PF06289	CLFO_RS11090
CLFO_RS11095	PF00460	Flagella basal body rod protein
CLFO_RS11095	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CLFO_RS11095	PF07559	Flagellar basal body protein FlaE
CLFO_RS11100	PF12611	CLFO_RS11100
CLFO_RS11105	PF03963	CLFO_RS11105
CLFO_RS11110	PF02120	Flagellar hook-length control protein FliK
CLFO_RS11120	PF02050	Flagellar FliJ protein
CLFO_RS11125	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
CLFO_RS11125	PF02874	ATP synthase alpha/beta family, beta-barrel domain
CLFO_RS11130	PF02108	CLFO_RS11130
CLFO_RS11135	PF01706	FliG C-terminal domain
CLFO_RS11135	PF14841	FliG middle domain
CLFO_RS11135	PF14842	FliG N-terminal domain
CLFO_RS11140	PF01514	Secretory protein of YscJ/FliF family
CLFO_RS11140	PF08345	CLFO_RS11140
CLFO_RS11145	PF02049	CLFO_RS11145
CLFO_RS11150	PF00460	Flagella basal body rod protein
CLFO_RS11150	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
CLFO_RS11155	PF00460	Flagella basal body rod protein
CLFO_RS11160	PF06018	CodY GAF-like domain
CLFO_RS11160	PF08222	CodY helix-turn-helix domain
CLFO_RS11165	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS11165	PF07724	AAA domain (Cdc48 subfamily)
CLFO_RS11165	PF10431	C-terminal, D2-small domain, of ClpB protein
CLFO_RS11170	PF00227	Proteasome subunit
CLFO_RS11175	PF01131	DNA topoisomerase
CLFO_RS11175	PF01396	CLFO_RS11175
CLFO_RS11175	PF01751	Toprim domain
CLFO_RS11180	PF02481	DNA recombination-mediator protein A
CLFO_RS11185	PF01078	Magnesium chelatase, subunit ChlI
CLFO_RS11185	PF13335	CLFO_RS11185
CLFO_RS11185	PF13541	Subunit ChlI of Mg-chelatase
CLFO_RS11190	PF02021	Uncharacterised protein family UPF0102
CLFO_RS11195	PF01351	Ribonuclease HII
CLFO_RS11200	PF01926	50S ribosome-binding GTPase
CLFO_RS11205	PF01245	Ribosomal protein L19
CLFO_RS11210	PF01746	tRNA (Guanine-1)-methyltransferase
CLFO_RS11215	PF01782	RimM N-terminal domain
CLFO_RS11215	PF05239	PRC-barrel domain
CLFO_RS11220	PF13083	KH domain
CLFO_RS11225	PF00886	Ribosomal protein S16
CLFO_RS11230	PF00448	SRP54-type protein, GTPase domain
CLFO_RS11230	PF02881	SRP54-type protein, helical bundle domain
CLFO_RS11230	PF02978	Signal peptide binding domain
CLFO_RS11235	PF04297	Putative helix-turn-helix protein, YlxM / p13 like
CLFO_RS11240	PF00448	SRP54-type protein, GTPase domain
CLFO_RS11240	PF02881	SRP54-type protein, helical bundle domain
CLFO_RS11245	PF02463	RecF/RecN/SMC N terminal domain
CLFO_RS11245	PF06470	SMC proteins Flexible Hinge Domain
CLFO_RS11250	PF04055	Radical SAM superfamily
CLFO_RS11250	PF16199	CLFO_RS11250
CLFO_RS11255	PF00035	Double-stranded RNA binding motif
CLFO_RS11255	PF14622	Ribonuclease-III-like
CLFO_RS11260	PF00109	Beta-ketoacyl synthase, N-terminal domain
CLFO_RS11260	PF02801	Beta-ketoacyl synthase, C-terminal domain
CLFO_RS11265	PF00550	Phosphopantetheine attachment site
CLFO_RS11270	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS11275	PF00698	Acyl transferase domain
CLFO_RS11280	PF03060	Nitronate monooxygenase
CLFO_RS11285	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
CLFO_RS11285	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CLFO_RS11290	PF02504	Fatty acid synthesis protein
CLFO_RS11295	PF03061	Thioesterase superfamily
CLFO_RS11295	PF08220	DeoR-like helix-turn-helix domain
CLFO_RS11300	PF01783	Ribosomal L32p protein family
CLFO_RS11305	PF02620	CLFO_RS11305
CLFO_RS11310	PF00871	Acetokinase family
CLFO_RS11315	PF05636	HIGH Nucleotidyl Transferase
CLFO_RS11320	PF07670	Nucleoside recognition
CLFO_RS11330	PF01467	Cytidylyltransferase
CLFO_RS11335	PF03602	Conserved hypothetical protein 95
CLFO_RS11340	PF00270	DEAD/DEAH box helicase
CLFO_RS11340	PF00271	Helicase conserved C-terminal domain
CLFO_RS11340	PF17191	CLFO_RS11340
CLFO_RS11345	PF02734	DAK2 domain
CLFO_RS11345	PF13684	Dihydroxyacetone kinase family
CLFO_RS11350	PF03780	CLFO_RS11350
CLFO_RS11355	PF00830	Ribosomal L28 family
CLFO_RS11360	PF04263	Thiamin pyrophosphokinase, catalytic domain
CLFO_RS11360	PF04265	Thiamin pyrophosphokinase, vitamin B1 binding domain
CLFO_RS11365	PF00834	Ribulose-phosphate 3 epimerase family
CLFO_RS11370	PF03193	Protein of unknown function, DUF258
CLFO_RS11370	PF16745	CLFO_RS11370
CLFO_RS11375	PF00069	Protein kinase domain
CLFO_RS11375	PF03793	PASTA domain
CLFO_RS11380	PF13672	Protein phosphatase 2C
CLFO_RS11385	PF04055	Radical SAM superfamily
CLFO_RS11385	PF13394	4Fe-4S single cluster domain
CLFO_RS11390	PF01029	NusB family
CLFO_RS11390	PF01189	NOL1/NOP2/sun family
CLFO_RS11390	PF17125	CLFO_RS11390
CLFO_RS11395	PF04298	CLFO_RS11395
CLFO_RS11400	PF01976	CLFO_RS11400
CLFO_RS11405	PF00551	Formyl transferase
CLFO_RS11405	PF02911	Formyl transferase, C-terminal domain
CLFO_RS11410	PF01327	Polypeptide deformylase
CLFO_RS11415	PF00271	Helicase conserved C-terminal domain
CLFO_RS11415	PF04851	Type III restriction enzyme, res subunit
CLFO_RS11420	PF02441	Flavoprotein
CLFO_RS11420	PF04127	DNA / pantothenate metabolism flavoprotein
CLFO_RS11425	PF01192	RNA polymerase Rpb6
CLFO_RS11430	PF00625	Guanylate kinase
CLFO_RS11435	PF04025	CLFO_RS11435
CLFO_RS11440	PF03755	CLFO_RS11440
CLFO_RS11440	PF08340	CLFO_RS11440
CLFO_RS11445	PF01678	Diaminopimelate epimerase
CLFO_RS11450	PF05670	CLFO_RS11450
CLFO_RS11450	PF05833	Fibronectin-binding protein A N-terminus (FbpA)
CLFO_RS11455	PF00156	Phosphoribosyl transferase domain
CLFO_RS11460	PF00849	RNA pseudouridylate synthase
CLFO_RS11460	PF01479	S4 domain
CLFO_RS11465	PF01252	CLFO_RS11465
CLFO_RS11470	PF01258	Prokaryotic dksA/traR C4-type zinc finger
CLFO_RS11480	PF01048	Phosphorylase superfamily
CLFO_RS11485	PF05103	DivIVA protein
CLFO_RS11490	PF01479	S4 domain
CLFO_RS11495	PF02325	CLFO_RS11495
CLFO_RS11500	PF04472	Protein of unknown function (DUF552)
CLFO_RS11505	PF01168	Alanine racemase, N-terminal domain
CLFO_RS11515	PF01522	Polysaccharide deacetylase
CLFO_RS11525	PF03486	HI0933-like protein
CLFO_RS11530	PF01361	Tautomerase enzyme
CLFO_RS11535	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS11535	PF00672	HAMP domain
CLFO_RS11535	PF02743	Cache domain
CLFO_RS11540	PF04970	Lecithin retinol acyltransferase
CLFO_RS11550	PF01381	Helix-turn-helix
CLFO_RS11555	PF00271	Helicase conserved C-terminal domain
CLFO_RS11555	PF04851	Type III restriction enzyme, res subunit
CLFO_RS11555	PF08463	CLFO_RS11555
CLFO_RS11555	PF13643	CLFO_RS11555
CLFO_RS11560	PF01420	Type I restriction modification DNA specificity domain
CLFO_RS11565	PF02384	N-6 DNA Methylase
CLFO_RS11565	PF12161	HsdM N-terminal domain
CLFO_RS11580	PF00239	Resolvase, N terminal domain
CLFO_RS11585	PF07508	Recombinase
CLFO_RS11590	PF00239	Resolvase, N terminal domain
CLFO_RS11600	PF09547	CLFO_RS11600
CLFO_RS11605	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
CLFO_RS11605	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
CLFO_RS11610	PF02660	CLFO_RS11610
CLFO_RS11615	PF01926	50S ribosome-binding GTPase
CLFO_RS11615	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
CLFO_RS11620	PF00595	PDZ domain (Also known as DHR or GLGF)
CLFO_RS11620	PF04459	CLFO_RS11620
CLFO_RS11625	PF11385	CLFO_RS11625
CLFO_RS11630	PF11385	CLFO_RS11630
CLFO_RS11640	PF14045	CLFO_RS11640
CLFO_RS11645	PF07454	CLFO_RS11645
CLFO_RS11650	PF07758	CLFO_RS11650
CLFO_RS11655	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS11655	PF00672	HAMP domain
CLFO_RS11655	PF00989	PAS fold
CLFO_RS11655	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS11655	PF16736	CLFO_RS11655
CLFO_RS11660	PF00072	Response regulator receiver domain
CLFO_RS11660	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS11665	PF02578	Multi-copper polyphenol oxidoreductase laccase
CLFO_RS11670	PF03477	ATP cone domain
CLFO_RS11675	PF05239	PRC-barrel domain
CLFO_RS11680	PF04539	Sigma-70 region 3
CLFO_RS11680	PF04542	Sigma-70 region 2
CLFO_RS11680	PF04545	Sigma-70, region 4
CLFO_RS11685	PF04542	Sigma-70 region 2
CLFO_RS11685	PF04545	Sigma-70, region 4
CLFO_RS11690	PF03419	CLFO_RS11690
CLFO_RS11695	PF00091	Tubulin/FtsZ family, GTPase domain
CLFO_RS11695	PF12327	FtsZ family, C-terminal domain
CLFO_RS11700	PF06947	CLFO_RS11700
CLFO_RS11705	PF05949	Bacterial protein of unknown function (DUF881)
CLFO_RS11710	PF05949	Bacterial protein of unknown function (DUF881)
CLFO_RS11715	PF03799	Cell division protein FtsQ
CLFO_RS11715	PF08478	POTRA domain, FtsQ-type
CLFO_RS11720	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CLFO_RS11725	PF03033	Glycosyltransferase family 28 N-terminal domain
CLFO_RS11725	PF04101	Glycosyltransferase family 28 C-terminal domain
CLFO_RS11730	PF01098	CLFO_RS11730
CLFO_RS11735	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS11735	PF08245	Mur ligase middle domain
CLFO_RS11740	PF00953	Glycosyl transferase family 4
CLFO_RS11745	PF01225	Mur ligase family, catalytic domain
CLFO_RS11745	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS11745	PF08245	Mur ligase middle domain
CLFO_RS11750	PF01225	Mur ligase family, catalytic domain
CLFO_RS11750	PF02875	Mur ligase family, glutamate ligase domain
CLFO_RS11750	PF08245	Mur ligase middle domain
CLFO_RS11755	PF00905	Penicillin binding protein transpeptidase domain
CLFO_RS11755	PF03717	Penicillin-binding Protein dimerisation domain
CLFO_RS11755	PF03793	PASTA domain
CLFO_RS11760	PF04999	CLFO_RS11760
CLFO_RS11765	PF01795	MraW methylase family
CLFO_RS11770	PF02381	MraZ protein
CLFO_RS11775	PF01790	CLFO_RS11775
CLFO_RS11785	PF09580	CLFO_RS11785
CLFO_RS11790	PF01791	DeoC/LacD family aldolase
CLFO_RS11795	PF06130	CLFO_RS11795
CLFO_RS11800	PF04471	Restriction endonuclease
CLFO_RS11805	PF03698	CLFO_RS11805
CLFO_RS11810	PF00156	Phosphoribosyl transferase domain
CLFO_RS11815	PF01923	Cobalamin adenosyltransferase
CLFO_RS11820	PF00293	NUDIX domain
CLFO_RS11830	PF01578	CLFO_RS11830
CLFO_RS11835	PF05140	CLFO_RS11835
CLFO_RS11840	PF02335	Cytochrome c552
CLFO_RS11845	PF01593	Flavin containing amine oxidoreductase
CLFO_RS11850	PF02581	Thiamine monophosphate synthase/TENI
CLFO_RS11855	PF06888	Putative Phosphatase
CLFO_RS11860	PF08543	Phosphomethylpyrimidine kinase
CLFO_RS11900	PF05067	Manganese containing catalase
CLFO_RS11905	PF07866	Protein of unknown function (DUF1653)
CLFO_RS11920	PF02687	CLFO_RS11920
CLFO_RS11920	PF12704	MacB-like periplasmic core domain
CLFO_RS11925	PF00005	ABC transporter
CLFO_RS11930	PF02687	CLFO_RS11930
CLFO_RS11930	PF12704	MacB-like periplasmic core domain
CLFO_RS11940	PF10080	CLFO_RS11940
CLFO_RS11945	PF02335	Cytochrome c552
CLFO_RS11950	PF05140	CLFO_RS11950
CLFO_RS11955	PF01578	CLFO_RS11955
CLFO_RS11960	PF00199	Catalase
CLFO_RS11960	PF01965	DJ-1/PfpI family
CLFO_RS11960	PF06628	Catalase-related immune-responsive
CLFO_RS11965	PF06941	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
CLFO_RS11970	PF00563	EAL domain
CLFO_RS11975	PF02384	N-6 DNA Methylase
CLFO_RS11980	PF09827	CRISPR associated protein Cas2
CLFO_RS11985	PF01867	CRISPR associated protein Cas1
CLFO_RS11990	PF01930	Domain of unknown function DUF83
CLFO_RS11995	PF00271	Helicase conserved C-terminal domain
CLFO_RS11995	PF01966	HD domain
CLFO_RS12000	PF09704	CRISPR-associated protein (Cas_Cas5)
CLFO_RS12005	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
CLFO_RS12010	PF09706	CLFO_RS12010
CLFO_RS12015	PF01881	CRISPR associated protein Cas6
CLFO_RS12020	PF08279	HTH domain
CLFO_RS12020	PF13280	CLFO_RS12020
CLFO_RS12025	PF04199	Putative cyclase
CLFO_RS12030	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
CLFO_RS12030	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
CLFO_RS12035	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
CLFO_RS12035	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
CLFO_RS12045	PF02310	B12 binding domain
CLFO_RS12045	PF02607	B12 binding domain
CLFO_RS12050	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS12055	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS12060	PF09084	NMT1/THI5 like
CLFO_RS12065	PF00005	ABC transporter
CLFO_RS12070	PF00364	Biotin-requiring enzyme
CLFO_RS12075	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
CLFO_RS12075	PF02785	Biotin carboxylase C-terminal domain
CLFO_RS12075	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CLFO_RS12080	PF01039	Carboxyl transferase domain
CLFO_RS12085	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
CLFO_RS12090	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS12090	PF14574	Domain of unknown function (DUF4445)
CLFO_RS12095	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS12100	PF02310	B12 binding domain
CLFO_RS12100	PF02607	B12 binding domain
CLFO_RS12105	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS12110	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS12115	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CLFO_RS12115	PF07683	Cobalamin synthesis protein cobW C-terminal domain
CLFO_RS12120	PF13439	Glycosyltransferase Family 4
CLFO_RS12125	PF14398	CLFO_RS12125
CLFO_RS12130	PF10842	CLFO_RS12130
CLFO_RS12135	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS12135	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS12140	PF04073	Aminoacyl-tRNA editing domain
CLFO_RS12145	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS12145	PF08388	CLFO_RS12145
CLFO_RS12150	PF07883	Cupin domain
CLFO_RS12165	PF00665	Integrase core domain
CLFO_RS12170	PF01695	IstB-like ATP binding protein
CLFO_RS12175	PF00155	Aminotransferase class I and II
CLFO_RS12180	PF00005	ABC transporter
CLFO_RS12185	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS12190	PF00497	Bacterial extracellular solute-binding proteins, family 3
CLFO_RS12195	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS12200	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS12205	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS12210	PF00005	ABC transporter
CLFO_RS12210	PF08402	TOBE domain
CLFO_RS12215	PF02872	5'-nucleotidase, C-terminal domain
CLFO_RS12230	PF13456	Reverse transcriptase-like
CLFO_RS12235	PF01784	NIF3 (NGG1p interacting factor 3)
CLFO_RS12240	PF12847	Methyltransferase domain
CLFO_RS12250	PF00140	Sigma-70 factor, region 1
CLFO_RS12250	PF03979	Sigma-70 factor, region 1
CLFO_RS12250	PF04539	Sigma-70 region 3
CLFO_RS12250	PF04542	Sigma-70 region 2
CLFO_RS12250	PF04545	Sigma-70, region 4
CLFO_RS12255	PF00772	DnaB-like helicase N terminal domain
CLFO_RS12255	PF01807	CHC2 zinc finger
CLFO_RS12255	PF08275	DNA primase catalytic core, N-terminal domain
CLFO_RS12255	PF10410	DnaB-helicase binding domain of primase
CLFO_RS12255	PF13155	Toprim-like
CLFO_RS12260	PF01966	HD domain
CLFO_RS12260	PF13286	Phosphohydrolase-associated domain
CLFO_RS12265	PF13786	Domain of unknown function (DUF4179)
CLFO_RS12270	PF04542	Sigma-70 region 2
CLFO_RS12270	PF08281	Sigma-70, region 4
CLFO_RS12285	PF00892	EamA-like transporter family
CLFO_RS12290	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS12290	PF01434	Peptidase family M41
CLFO_RS12290	PF06480	FtsH Extracellular
CLFO_RS12295	PF02096	60Kd inner membrane protein
CLFO_RS12300	PF13091	PLD-like domain
CLFO_RS12305	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS12305	PF00672	HAMP domain
CLFO_RS12305	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS12310	PF00072	Response regulator receiver domain
CLFO_RS12310	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS12315	PF07995	Glucose / Sorbosone dehydrogenase
CLFO_RS12330	PF14690	CLFO_RS12330
CLFO_RS12335	PF01610	CLFO_RS12335
CLFO_RS12340	PF01381	Helix-turn-helix
CLFO_RS12345	PF00155	Aminotransferase class I and II
CLFO_RS12355	PF12724	Flavodoxin domain
CLFO_RS12360	PF11155	Domain of unknown function (DUF2935)
CLFO_RS12365	PF00391	PEP-utilising enzyme, mobile domain
CLFO_RS12365	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CLFO_RS12365	PF02896	PEP-utilising enzyme, TIM barrel domain
CLFO_RS12370	PF03618	CLFO_RS12370
CLFO_RS12375	PF00571	CBS domain
CLFO_RS12375	PF08279	HTH domain
CLFO_RS12380	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CLFO_RS12380	PF03129	Anticodon binding domain
CLFO_RS12385	PF14242	CLFO_RS12385
CLFO_RS12390	PF02565	Recombination protein O C terminal
CLFO_RS12390	PF11967	Recombination protein O N terminal
CLFO_RS12395	PF14006	CLFO_RS12395
CLFO_RS12400	PF01926	50S ribosome-binding GTPase
CLFO_RS12400	PF07650	KH domain
CLFO_RS12405	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CLFO_RS12410	PF11258	Protein of unknown function (DUF3048)
CLFO_RS12415	PF01219	Prokaryotic diacylglycerol kinase
CLFO_RS12415	PF01569	PAP2 superfamily
CLFO_RS12420	PF02130	Uncharacterized protein family UPF0054
CLFO_RS12425	PF01966	HD domain
CLFO_RS12425	PF07697	CLFO_RS12425
CLFO_RS12425	PF07698	CLFO_RS12425
CLFO_RS12430	PF02562	PhoH-like protein
CLFO_RS12435	PF06898	CLFO_RS12435
CLFO_RS12440	PF07873	YabP family
CLFO_RS12450	PF12127	CLFO_RS12450
CLFO_RS12455	PF01957	NfeD-like C-terminal, partner-binding
CLFO_RS12455	PF01972	Serine dehydrogenase proteinase
CLFO_RS12460	PF03372	Endonuclease/Exonuclease/phosphatase family
CLFO_RS12465	PF09424	Yqey-like protein
CLFO_RS12470	PF01165	Ribosomal protein S21
CLFO_RS12475	PF01230	HIT domain
CLFO_RS12480	PF00919	Uncharacterized protein family UPF0004
CLFO_RS12480	PF04055	Radical SAM superfamily
CLFO_RS12485	PF04452	RNA methyltransferase
CLFO_RS12490	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
CLFO_RS12495	PF00226	DnaJ domain
CLFO_RS12495	PF00684	DnaJ central domain
CLFO_RS12495	PF01556	DnaJ C terminal domain
CLFO_RS12500	PF00012	Hsp70 protein
CLFO_RS12505	PF01025	GrpE
CLFO_RS12510	PF01628	HrcA protein C terminal domain
CLFO_RS12515	PF04055	Radical SAM superfamily
CLFO_RS12515	PF06969	HemN C-terminal domain
CLFO_RS12520	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS12520	PF00679	Elongation factor G C-terminus
CLFO_RS12520	PF03144	Elongation factor Tu domain 2
CLFO_RS12520	PF06421	GTP-binding protein LepA C-terminus
CLFO_RS12530	PF07454	CLFO_RS12530
CLFO_RS12535	PF03418	Germination protease
CLFO_RS12540	PF01649	Ribosomal protein S20
CLFO_RS12545	PF06144	DNA polymerase III, delta subunit
CLFO_RS12550	PF03772	CLFO_RS12550
CLFO_RS12550	PF13567	CLFO_RS12550
CLFO_RS12560	PF00072	Response regulator receiver domain
CLFO_RS12560	PF04397	LytTr DNA-binding domain
CLFO_RS12565	PF00005	ABC transporter
CLFO_RS12580	PF02687	CLFO_RS12580
CLFO_RS12585	PF02687	CLFO_RS12585
CLFO_RS12590	PF00005	ABC transporter
CLFO_RS12605	PF00583	Acetyltransferase (GNAT) family
CLFO_RS12615	PF00005	ABC transporter
CLFO_RS12625	PF00072	Response regulator receiver domain
CLFO_RS12635	PF12706	Beta-lactamase superfamily domain
CLFO_RS12640	PF13414	TPR repeat
CLFO_RS12640	PF13429	Tetratricopeptide repeat
CLFO_RS12645	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS12655	PF01411	tRNA synthetases class II (A)
CLFO_RS12655	PF02272	DHHA1 domain
CLFO_RS12655	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
CLFO_RS12660	PF04608	Phosphatidylglycerophosphatase A
CLFO_RS12665	PF00270	DEAD/DEAH box helicase
CLFO_RS12665	PF00271	Helicase conserved C-terminal domain
CLFO_RS12665	PF03880	DbpA RNA binding domain
CLFO_RS12675	PF07875	CLFO_RS12675
CLFO_RS12685	PF00403	Heavy-metal-associated domain
CLFO_RS12695	PF00209	Sodium:neurotransmitter symporter family
CLFO_RS12700	PF02687	CLFO_RS12700
CLFO_RS12700	PF12704	MacB-like periplasmic core domain
CLFO_RS12705	PF07705	CARDB
CLFO_RS12710	PF00005	ABC transporter
CLFO_RS12715	PF00881	Nitroreductase family
CLFO_RS12720	PF03773	CLFO_RS12720
CLFO_RS12725	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS12730	PF02683	CLFO_RS12730
CLFO_RS12735	PF00085	Thioredoxin
CLFO_RS12740	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS12745	PF04055	Radical SAM superfamily
CLFO_RS12745	PF13186	Iron-sulfur cluster-binding domain
CLFO_RS12745	PF13394	4Fe-4S single cluster domain
CLFO_RS12755	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS12760	PF00072	Response regulator receiver domain
CLFO_RS12760	PF03861	ANTAR domain
CLFO_RS12765	PF00120	Glutamine synthetase, catalytic domain
CLFO_RS12765	PF03951	Glutamine synthetase, beta-Grasp domain
CLFO_RS12770	PF02637	GatB domain
CLFO_RS12770	PF02934	GatB/GatE catalytic domain
CLFO_RS12775	PF01425	Amidase
CLFO_RS12780	PF02686	Glu-tRNAGln amidotransferase C subunit
CLFO_RS12785	PF00152	tRNA synthetases class II (D, K and N)
CLFO_RS12785	PF01336	OB-fold nucleic acid binding domain
CLFO_RS12790	PF13710	ACT domain
CLFO_RS12795	PF00205	Thiamine pyrophosphate enzyme, central domain
CLFO_RS12795	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS12795	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
CLFO_RS12800	PF01385	CLFO_RS12800
CLFO_RS12805	PF01797	Transposase IS200 like
CLFO_RS12815	PF00474	Sodium:solute symporter family
CLFO_RS12825	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS12830	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS12835	PF00005	ABC transporter
CLFO_RS12840	PF16138	CLFO_RS12840
CLFO_RS12845	PF09861	Domain of unknown function (DUF2088)
CLFO_RS12850	PF00107	Zinc-binding dehydrogenase
CLFO_RS12850	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS12855	PF02447	CLFO_RS12855
CLFO_RS12860	PF00106	short chain dehydrogenase
CLFO_RS12865	PF03786	D-mannonate dehydratase (UxuA)
CLFO_RS12870	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS12870	PF07729	FCD domain
CLFO_RS12875	PF08903	Domain of unknown function (DUF1846)
CLFO_RS12880	PF02698	DUF218 domain
CLFO_RS12885	PF00005	ABC transporter
CLFO_RS12885	PF00664	ABC transporter transmembrane region
CLFO_RS12890	PF00005	ABC transporter
CLFO_RS12890	PF00664	ABC transporter transmembrane region
CLFO_RS12895	PF00005	ABC transporter
CLFO_RS12895	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS12900	PF00005	ABC transporter
CLFO_RS12900	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS12905	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS12910	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS12915	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS12920	PF00892	EamA-like transporter family
CLFO_RS12925	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS12930	PF06808	CLFO_RS12930
CLFO_RS12935	PF04290	CLFO_RS12935
CLFO_RS12940	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS12945	PF04962	KduI/IolB family
CLFO_RS12950	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS12950	PF07729	FCD domain
CLFO_RS12955	PF00122	E1-E2 ATPase
CLFO_RS12955	PF00689	Cation transporting ATPase, C-terminus
CLFO_RS12955	PF00690	Cation transporter/ATPase, N-terminus
CLFO_RS12955	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS12960	PF02342	TerD domain
CLFO_RS12965	PF02342	TerD domain
CLFO_RS12970	PF02342	TerD domain
CLFO_RS12975	PF05816	CLFO_RS12975
CLFO_RS12980	PF14266	CLFO_RS12980
CLFO_RS12985	PF01235	CLFO_RS12985
CLFO_RS12990	PF00158	Sigma-54 interaction domain
CLFO_RS12990	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS12995	PF00395	S-layer homology domain
CLFO_RS12995	PF07678	A-macroglobulin complement component
CLFO_RS13000	PF12822	Protein of unknown function (DUF3816)
CLFO_RS13005	PF00005	ABC transporter
CLFO_RS13010	PF02361	Cobalt transport protein
CLFO_RS13015	PF14478	Domain of unknown function (DUF4430)
CLFO_RS13020	PF00395	S-layer homology domain
CLFO_RS13025	PF00395	S-layer homology domain
CLFO_RS13025	PF14478	Domain of unknown function (DUF4430)
CLFO_RS13030	PF07554	Uncharacterised Sugar-binding Domain
CLFO_RS13030	PF12733	CLFO_RS13030
CLFO_RS13030	PF14478	Domain of unknown function (DUF4430)
CLFO_RS13035	PF02026	RyR domain
CLFO_RS13040	PF10050	CLFO_RS13040
CLFO_RS13045	PF00005	ABC transporter
CLFO_RS13045	PF08402	TOBE domain
CLFO_RS13050	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS13055	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS13060	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS13065	PF04309	Glycerol-3-phosphate responsive antiterminator
CLFO_RS13070	PF13242	HAD-hyrolase-like
CLFO_RS13070	PF13344	Haloacid dehalogenase-like hydrolase
CLFO_RS13075	PF04055	Radical SAM superfamily
CLFO_RS13075	PF13353	4Fe-4S single cluster domain
CLFO_RS13080	PF04055	Radical SAM superfamily
CLFO_RS13085	PF01381	Helix-turn-helix
CLFO_RS13090	PF01053	Cys/Met metabolism PLP-dependent enzyme
CLFO_RS13095	PF01053	Cys/Met metabolism PLP-dependent enzyme
CLFO_RS13100	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
CLFO_RS13100	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
CLFO_RS13105	PF00107	Zinc-binding dehydrogenase
CLFO_RS13105	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS13110	PF13407	Periplasmic binding protein domain
CLFO_RS13115	PF02653	CLFO_RS13115
CLFO_RS13120	PF00005	ABC transporter
CLFO_RS13125	PF00072	Response regulator receiver domain
CLFO_RS13125	PF12833	Helix-turn-helix domain
CLFO_RS13130	PF00672	HAMP domain
CLFO_RS13130	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS13130	PF02743	Cache domain
CLFO_RS13130	PF06580	CLFO_RS13130
CLFO_RS13135	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS13140	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS13140	PF00672	HAMP domain
CLFO_RS13140	PF12729	CLFO_RS13140
CLFO_RS13145	PF13599	Pentapeptide repeats (9 copies)
CLFO_RS13150	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS13150	PF03466	LysR substrate binding domain
CLFO_RS13155	PF03601	CLFO_RS13155
CLFO_RS13160	PF13091	PLD-like domain
CLFO_RS13165	PF00488	MutS domain V
CLFO_RS13165	PF05192	MutS domain III
CLFO_RS13175	PF02560	Cyanate lyase C-terminal domain
CLFO_RS13180	PF01243	Pyridoxamine 5'-phosphate oxidase
CLFO_RS13185	PF01638	HxlR-like helix-turn-helix
CLFO_RS13190	PF05437	CLFO_RS13190
CLFO_RS13195	PF03591	CLFO_RS13195
CLFO_RS13200	PF00155	Aminotransferase class I and II
CLFO_RS13200	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS13205	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS13205	PF03466	LysR substrate binding domain
CLFO_RS13210	PF01996	F420-0:Gamma-glutamyl ligase
CLFO_RS13215	PF01261	Xylose isomerase-like TIM barrel
CLFO_RS13225	PF01037	AsnC family
CLFO_RS13225	PF13412	Winged helix-turn-helix DNA-binding
CLFO_RS13240	PF08241	Methyltransferase domain
CLFO_RS13250	PF10400	Virulence activator alpha C-term
CLFO_RS13255	PF03551	Transcriptional regulator PadR-like family
CLFO_RS13260	PF00583	Acetyltransferase (GNAT) family
CLFO_RS13265	PF00872	CLFO_RS13265
CLFO_RS13285	PF14285	CLFO_RS13285
CLFO_RS13290	PF04542	Sigma-70 region 2
CLFO_RS13290	PF08281	Sigma-70, region 4
CLFO_RS13295	PF08241	Methyltransferase domain
CLFO_RS13300	PF02082	Transcriptional regulator
CLFO_RS13315	PF14690	CLFO_RS13315
CLFO_RS13320	PF01610	CLFO_RS13320
CLFO_RS13325	PF00872	CLFO_RS13325
CLFO_RS13335	PF05717	CLFO_RS13335
CLFO_RS13340	PF03050	CLFO_RS13340
CLFO_RS13340	PF13005	CLFO_RS13340
CLFO_RS13350	PF01909	Nucleotidyltransferase domain
CLFO_RS13355	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS13360	PF02633	Creatinine amidohydrolase
CLFO_RS13365	PF02589	Uncharacterised ACR, YkgG family COG1556
CLFO_RS13375	PF13650	Aspartyl protease
CLFO_RS13385	PF13527	Acetyltransferase (GNAT) domain
CLFO_RS13390	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS13390	PF08388	CLFO_RS13390
CLFO_RS13400	PF00589	Phage integrase family
CLFO_RS13400	PF13495	Phage integrase, N-terminal SAM-like domain
CLFO_RS13410	PF01541	GIY-YIG catalytic domain
CLFO_RS13410	PF02151	UvrB/uvrC motif
CLFO_RS13425	PF00072	Response regulator receiver domain
CLFO_RS13425	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS13430	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS13430	PF00672	HAMP domain
CLFO_RS13430	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS13435	PF14262	Domain of unknown function (DUF4353)
CLFO_RS13440	PF13786	Domain of unknown function (DUF4179)
CLFO_RS13445	PF04542	Sigma-70 region 2
CLFO_RS13445	PF04545	Sigma-70, region 4
CLFO_RS13450	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS13450	PF01551	Peptidase family M23
CLFO_RS13450	PF05569	BlaR1 peptidase M56
CLFO_RS13455	PF03965	Penicillinase repressor
CLFO_RS13460	PF00149	Calcineurin-like phosphoesterase
CLFO_RS13465	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS13470	PF13247	4Fe-4S dicluster domain
CLFO_RS13475	PF03063	Prismane/CO dehydrogenase family
CLFO_RS13480	PF02082	Transcriptional regulator
CLFO_RS13485	PF00902	Sec-independent protein translocase protein (TatC)
CLFO_RS13490	PF02416	mttA/Hcf106 family
CLFO_RS13495	PF00902	Sec-independent protein translocase protein (TatC)
CLFO_RS13500	PF00398	Ribosomal RNA adenine dimethylase
CLFO_RS13505	PF01564	Spermine/spermidine synthase
CLFO_RS13515	PF11127	Protein of unknown function (DUF2892)
CLFO_RS13525	PF01790	CLFO_RS13525
CLFO_RS13530	PF02683	CLFO_RS13530
CLFO_RS13540	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS13540	PF00672	HAMP domain
CLFO_RS13540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS13545	PF00072	Response regulator receiver domain
CLFO_RS13545	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS13555	PF04216	Protein involved in formate dehydrogenase formation
CLFO_RS13560	PF13247	4Fe-4S dicluster domain
CLFO_RS13570	PF00395	S-layer homology domain
CLFO_RS13575	PF00704	Glycosyl hydrolases family 18
CLFO_RS13575	PF01476	LysM domain
CLFO_RS13580	PF00122	E1-E2 ATPase
CLFO_RS13580	PF00403	Heavy-metal-associated domain
CLFO_RS13580	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS13585	PF07314	CLFO_RS13585
CLFO_RS13600	PF08241	Methyltransferase domain
CLFO_RS13605	PF09388	Spo0E like sporulation regulatory protein
CLFO_RS13615	PF00072	Response regulator receiver domain
CLFO_RS13615	PF00196	Bacterial regulatory proteins, luxR family
CLFO_RS13625	PF03167	Uracil DNA glycosylase superfamily
CLFO_RS13630	PF00694	Aconitase C-terminal domain
CLFO_RS13635	PF03390	CLFO_RS13635
CLFO_RS13640	PF00072	Response regulator receiver domain
CLFO_RS13640	PF08279	HTH domain
CLFO_RS13645	PF00989	PAS fold
CLFO_RS13645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS13645	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
CLFO_RS13645	PF17203	CLFO_RS13645
CLFO_RS13650	PF00890	FAD binding domain
CLFO_RS13650	PF04205	FMN-binding domain
CLFO_RS13655	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS13655	PF08359	YsiA-like protein, C-terminal region
CLFO_RS13665	PF04055	Radical SAM superfamily
CLFO_RS13665	PF13353	4Fe-4S single cluster domain
CLFO_RS13670	PF04165	CLFO_RS13670
CLFO_RS13675	PF04073	Aminoacyl-tRNA editing domain
CLFO_RS13680	PF00082	Subtilase family
CLFO_RS13680	PF00395	S-layer homology domain
CLFO_RS13690	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS13690	PF00672	HAMP domain
CLFO_RS13690	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS13695	PF00072	Response regulator receiver domain
CLFO_RS13695	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS13705	PF00892	EamA-like transporter family
CLFO_RS13710	PF00155	Aminotransferase class I and II
CLFO_RS13715	PF00155	Aminotransferase class I and II
CLFO_RS13715	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS13720	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
CLFO_RS13725	PF00994	Probable molybdopterin binding domain
CLFO_RS13725	PF03453	MoeA N-terminal region (domain I and II)
CLFO_RS13725	PF03454	MoeA C-terminal region (domain IV)
CLFO_RS13730	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS13740	PF08241	Methyltransferase domain
CLFO_RS13745	PF00005	ABC transporter
CLFO_RS13750	PF01032	FecCD transport family
CLFO_RS13755	PF01497	Periplasmic binding protein
CLFO_RS13760	PF00005	ABC transporter
CLFO_RS13765	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CLFO_RS13770	PF08984	Domain of unknown function (DUF1858)
CLFO_RS13770	PF13343	Bacterial extracellular solute-binding protein
CLFO_RS13775	PF08241	Methyltransferase domain
CLFO_RS13780	PF00005	ABC transporter
CLFO_RS13785	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS13790	PF09084	NMT1/THI5 like
CLFO_RS13800	PF03551	Transcriptional regulator PadR-like family
CLFO_RS13805	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
CLFO_RS13805	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
CLFO_RS13810	PF13531	Bacterial extracellular solute-binding protein
CLFO_RS13815	PF02625	XdhC and CoxI family
CLFO_RS13815	PF13478	XdhC Rossmann domain
CLFO_RS13820	PF00881	Nitroreductase family
CLFO_RS13825	PF04205	FMN-binding domain
CLFO_RS13835	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS13835	PF03466	LysR substrate binding domain
CLFO_RS13840	PF04143	CLFO_RS13840
CLFO_RS13845	PF01206	Sulfurtransferase TusA
CLFO_RS13850	PF04143	CLFO_RS13850
CLFO_RS13855	PF00902	Sec-independent protein translocase protein (TatC)
CLFO_RS13860	PF02416	mttA/Hcf106 family
CLFO_RS13865	PF07228	Stage II sporulation protein E (SpoIIE)
CLFO_RS13865	PF17159	CLFO_RS13865
CLFO_RS13870	PF03816	Cell envelope-related transcriptional attenuator domain
CLFO_RS13875	PF03717	Penicillin-binding Protein dimerisation domain
CLFO_RS13880	PF00905	Penicillin binding protein transpeptidase domain
CLFO_RS13880	PF05569	BlaR1 peptidase M56
CLFO_RS13885	PF03965	Penicillinase repressor
CLFO_RS13895	PF12849	PBP superfamily domain
CLFO_RS13900	PF01979	Amidohydrolase family
CLFO_RS13905	PF02219	Methylenetetrahydrofolate reductase
CLFO_RS13910	PF00395	S-layer homology domain
CLFO_RS13910	PF02638	CLFO_RS13910
CLFO_RS13915	PF07670	Nucleoside recognition
CLFO_RS13920	PF00535	Glycosyl transferase family 2
CLFO_RS13925	PF00535	Glycosyl transferase family 2
CLFO_RS13925	PF02709	N-terminal domain of galactosyltransferase
CLFO_RS13935	PF00581	Rhodanese-like domain
CLFO_RS13940	PF00005	ABC transporter
CLFO_RS13945	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS13955	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS13960	PF01066	CDP-alcohol phosphatidyltransferase
CLFO_RS13965	PF09335	CLFO_RS13965
CLFO_RS13970	PF02754	CLFO_RS13970
CLFO_RS13970	PF13237	4Fe-4S dicluster domain
CLFO_RS13975	PF09335	CLFO_RS13975
CLFO_RS13980	PF04343	CLFO_RS13980
CLFO_RS13990	PF00313	'Cold-shock' DNA-binding domain
CLFO_RS13995	PF00939	Sodium:sulfate symporter transmembrane region
CLFO_RS14000	PF13347	MFS/sugar transport protein
CLFO_RS14005	PF02310	B12 binding domain
CLFO_RS14005	PF02607	B12 binding domain
CLFO_RS14010	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS14015	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS14020	PF00270	DEAD/DEAH box helicase
CLFO_RS14020	PF00271	Helicase conserved C-terminal domain
CLFO_RS14030	PF12833	Helix-turn-helix domain
CLFO_RS14030	PF14526	Integron-associated effector binding protein
CLFO_RS14035	PF01980	Uncharacterised protein family UPF0066
CLFO_RS14040	PF01228	Glycine radical
CLFO_RS14040	PF02901	Pyruvate formate lyase
CLFO_RS14045	PF04055	Radical SAM superfamily
CLFO_RS14045	PF13353	4Fe-4S single cluster domain
CLFO_RS14050	PF01381	Helix-turn-helix
CLFO_RS14065	PF13649	Methyltransferase domain
CLFO_RS14070	PF00583	Acetyltransferase (GNAT) family
CLFO_RS14080	PF11208	CLFO_RS14080
CLFO_RS14090	PF13302	Acetyltransferase (GNAT) domain
CLFO_RS14095	PF02110	Hydroxyethylthiazole kinase family
CLFO_RS14100	PF09512	CLFO_RS14100
CLFO_RS14105	PF01613	Flavin reductase like domain
CLFO_RS14115	PF02597	ThiS family
CLFO_RS14120	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
CLFO_RS14120	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CLFO_RS14125	PF01925	CLFO_RS14125
CLFO_RS14130	PF00701	Dihydrodipicolinate synthetase family
CLFO_RS14135	PF01266	FAD dependent oxidoreductase
CLFO_RS14140	PF04324	BFD-like [2Fe-2S] binding domain
CLFO_RS14145	PF00037	4Fe-4S binding domain
CLFO_RS14150	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS14155	PF13510	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS14160	PF00158	Sigma-54 interaction domain
CLFO_RS14160	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS14165	PF00174	Oxidoreductase molybdopterin binding domain
CLFO_RS14165	PF03404	Mo-co oxidoreductase dimerisation domain
CLFO_RS14170	PF03734	L,D-transpeptidase catalytic domain
CLFO_RS14170	PF12229	Putative peptidoglycan binding domain
CLFO_RS14175	PF01476	LysM domain
CLFO_RS14180	PF11775	CLFO_RS14180
CLFO_RS14185	PF07728	AAA domain (dynein-related subfamily)
CLFO_RS14195	PF04055	Radical SAM superfamily
CLFO_RS14200	PF03483	B3/4 domain
CLFO_RS14205	PF01554	MatE
CLFO_RS14220	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
CLFO_RS14225	PF05016	Plasmid stabilisation system protein
CLFO_RS14230	PF01545	Cation efflux family
CLFO_RS14235	PF01797	Transposase IS200 like
CLFO_RS14240	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS14260	PF01668	SmpB protein
CLFO_RS14265	PF02080	TrkA-C domain
CLFO_RS14270	PF00575	S1 RNA binding domain
CLFO_RS14270	PF00773	RNB domain
CLFO_RS14270	PF08206	Ribonuclease B OB domain
CLFO_RS14275	PF06961	CLFO_RS14275
CLFO_RS14280	PF03030	Inorganic H+ pyrophosphatase
CLFO_RS14285	PF03840	Preprotein translocase SecG subunit
CLFO_RS14290	PF00113	Enolase, C-terminal TIM barrel domain
CLFO_RS14290	PF03952	Enolase, N-terminal domain
CLFO_RS14295	PF01676	Metalloenzyme superfamily
CLFO_RS14295	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
CLFO_RS14300	PF00121	Triosephosphate isomerase
CLFO_RS14305	PF00162	Phosphoglycerate kinase
CLFO_RS14310	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CLFO_RS14310	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
CLFO_RS14315	PF04198	Putative sugar-binding domain
CLFO_RS14320	PF00309	CLFO_RS14320
CLFO_RS14320	PF04552	Sigma-54, DNA binding domain
CLFO_RS14320	PF04963	Sigma-54 factor, core binding domain
CLFO_RS14325	PF02504	Fatty acid synthesis protein
CLFO_RS14330	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
CLFO_RS14345	PF09338	CLFO_RS14345
CLFO_RS14350	PF00085	Thioredoxin
CLFO_RS14355	PF07992	Pyridine nucleotide-disulphide oxidoreductase
CLFO_RS14365	PF02645	Uncharacterised protein, DegV family COG1307
CLFO_RS14370	PF00588	SpoU rRNA Methylase family
CLFO_RS14375	PF16868	CLFO_RS14375
CLFO_RS14380	PF06808	CLFO_RS14380
CLFO_RS14385	PF04239	Protein of unknown function (DUF421)
CLFO_RS14395	PF07875	CLFO_RS14395
CLFO_RS14400	PF00107	Zinc-binding dehydrogenase
CLFO_RS14400	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS14400	PF13823	Alcohol dehydrogenase GroES-associated
CLFO_RS14410	PF07875	CLFO_RS14410
CLFO_RS14415	PF09557	CLFO_RS14415
CLFO_RS14420	PF09557	CLFO_RS14420
CLFO_RS14425	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS14430	PF03323	CLFO_RS14430
CLFO_RS14435	PF03845	CLFO_RS14435
CLFO_RS14440	PF05504	Spore germination B3/ GerAC like, C-terminal
CLFO_RS14445	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS14450	PF00732	GMC oxidoreductase
CLFO_RS14450	PF05199	GMC oxidoreductase
CLFO_RS14470	PF07875	CLFO_RS14470
CLFO_RS14475	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS14480	PF00005	ABC transporter
CLFO_RS14485	PF13346	CLFO_RS14485
CLFO_RS14490	PF02687	CLFO_RS14490
CLFO_RS14495	PF00005	ABC transporter
CLFO_RS14500	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS14505	PF00072	Response regulator receiver domain
CLFO_RS14505	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS14510	PF01381	Helix-turn-helix
CLFO_RS14510	PF07883	Cupin domain
CLFO_RS14515	PF01966	HD domain
CLFO_RS14530	PF09345	CLFO_RS14530
CLFO_RS14535	PF02743	Cache domain
CLFO_RS14535	PF07228	Stage II sporulation protein E (SpoIIE)
CLFO_RS14540	PF00990	GGDEF domain
CLFO_RS14545	PF00701	Dihydrodipicolinate synthetase family
CLFO_RS14550	PF04295	CLFO_RS14550
CLFO_RS14555	PF08666	SAF domain
CLFO_RS14560	PF03812	CLFO_RS14560
CLFO_RS14565	PF00682	HMGL-like
CLFO_RS14565	PF07836	DmpG-like communication domain
CLFO_RS14570	PF01118	Semialdehyde dehydrogenase, NAD binding domain
CLFO_RS14570	PF09290	Prokaryotic acetaldehyde dehydrogenase, dimerisation
CLFO_RS14575	PF01614	Bacterial transcriptional regulator
CLFO_RS14575	PF09339	IclR helix-turn-helix domain
CLFO_RS14580	PF03479	Domain of unknown function (DUF296)
CLFO_RS14585	PF00072	Response regulator receiver domain
CLFO_RS14585	PF13414	TPR repeat
CLFO_RS14590	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS14590	PF00672	HAMP domain
CLFO_RS14590	PF00989	PAS fold
CLFO_RS14590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS14595	PF02254	TrkA-N domain
CLFO_RS14600	PF02386	Cation transport protein
CLFO_RS14605	PF02080	TrkA-C domain
CLFO_RS14605	PF02254	TrkA-N domain
CLFO_RS14610	PF02254	TrkA-N domain
CLFO_RS14615	PF00072	Response regulator receiver domain
CLFO_RS14620	PF00072	Response regulator receiver domain
CLFO_RS14625	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS14625	PF00672	HAMP domain
CLFO_RS14625	PF00989	PAS fold
CLFO_RS14625	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS14630	PF00484	Carbonic anhydrase
CLFO_RS14635	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS14635	PF00672	HAMP domain
CLFO_RS14635	PF17203	CLFO_RS14635
CLFO_RS14640	PF00117	Glutamine amidotransferase class-I
CLFO_RS14660	PF11738	Protein of unknown function (DUF3298)
CLFO_RS14660	PF14903	CLFO_RS14660
CLFO_RS14665	PF01613	Flavin reductase like domain
CLFO_RS14675	PF09862	CLFO_RS14675
CLFO_RS14680	PF01554	MatE
CLFO_RS14690	PF00005	ABC transporter
CLFO_RS14695	PF01232	Mannitol dehydrogenase Rossmann domain
CLFO_RS14695	PF08125	Mannitol dehydrogenase C-terminal domain
CLFO_RS14700	PF03786	D-mannonate dehydratase (UxuA)
CLFO_RS14705	PF02614	Glucuronate isomerase
CLFO_RS14710	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS14710	PF07729	FCD domain
CLFO_RS14715	PF06808	CLFO_RS14715
CLFO_RS14720	PF04290	CLFO_RS14720
CLFO_RS14725	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS14730	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS14735	PF13539	D-alanyl-D-alanine carboxypeptidase
CLFO_RS14740	PF01171	PP-loop family
CLFO_RS14745	PF01131	DNA topoisomerase
CLFO_RS14745	PF01751	Toprim domain
CLFO_RS14750	PF00005	ABC transporter
CLFO_RS14750	PF12848	ABC transporter
CLFO_RS14755	PF00005	ABC transporter
CLFO_RS14755	PF12848	ABC transporter
CLFO_RS14755	PF16326	CLFO_RS14755
CLFO_RS14760	PF00270	DEAD/DEAH box helicase
CLFO_RS14760	PF00271	Helicase conserved C-terminal domain
CLFO_RS14765	PF01432	Peptidase family M3
CLFO_RS14775	PF13420	Acetyltransferase (GNAT) domain
CLFO_RS14780	PF00072	Response regulator receiver domain
CLFO_RS14780	PF01584	CheW-like domain
CLFO_RS14785	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS14785	PF00672	HAMP domain
CLFO_RS14790	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS14790	PF00583	Acetyltransferase (GNAT) family
CLFO_RS14800	PF02390	Putative methyltransferase
CLFO_RS14805	PF01381	Helix-turn-helix
CLFO_RS14810	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS14815	PF02310	B12 binding domain
CLFO_RS14815	PF02607	B12 binding domain
CLFO_RS14820	PF00809	Pterin binding enzyme
CLFO_RS14825	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS14840	PF14907	Uncharacterised nucleotidyltransferase
CLFO_RS14845	PF00005	ABC transporter
CLFO_RS14845	PF00664	ABC transporter transmembrane region
CLFO_RS14855	PF05402	Coenzyme PQQ synthesis protein D (PqqD)
CLFO_RS14865	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)
CLFO_RS14870	PF00754	F5/8 type C domain
CLFO_RS14870	PF12733	CLFO_RS14870
CLFO_RS14875	PF07484	Phage Tail Collar Domain
CLFO_RS14880	PF07484	Phage Tail Collar Domain
CLFO_RS14885	PF10727	Rossmann-like domain
CLFO_RS14885	PF10728	Domain of unknown function (DUF2520)
CLFO_RS14890	PF02548	Ketopantoate hydroxymethyltransferase
CLFO_RS14895	PF02569	Pantoate-beta-alanine ligase
CLFO_RS14900	PF02261	Aspartate decarboxylase
CLFO_RS14905	PF07739	TipAS antibiotic-recognition domain
CLFO_RS14910	PF01370	NAD dependent epimerase/dehydratase family
CLFO_RS14915	PF02678	Pirin
CLFO_RS14915	PF05726	Pirin C-terminal cupin domain
CLFO_RS14920	PF00701	Dihydrodipicolinate synthetase family
CLFO_RS14925	PF00920	Dehydratase family
CLFO_RS14930	PF02447	CLFO_RS14930
CLFO_RS14935	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS14935	PF07729	FCD domain
CLFO_RS14940	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS14945	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
CLFO_RS14950	PF04392	ABC transporter substrate binding protein
CLFO_RS14955	PF02653	CLFO_RS14955
CLFO_RS14960	PF00005	ABC transporter
CLFO_RS14965	PF07739	TipAS antibiotic-recognition domain
CLFO_RS14965	PF13411	MerR HTH family regulatory protein
CLFO_RS14970	PF00005	ABC transporter
CLFO_RS14975	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS14980	PF13379	NMT1-like family
CLFO_RS14985	PF00842	Alanine racemase, C-terminal domain
CLFO_RS14985	PF01168	Alanine racemase, N-terminal domain
CLFO_RS14985	PF01757	CLFO_RS14985
CLFO_RS14990	PF02557	D-alanyl-D-alanine carboxypeptidase
CLFO_RS14995	PF01820	D-ala D-ala ligase N-terminus
CLFO_RS14995	PF07478	D-ala D-ala ligase C-terminus
CLFO_RS15000	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS15000	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS15005	PF00072	Response regulator receiver domain
CLFO_RS15005	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS15010	PF00571	CBS domain
CLFO_RS15015	PF07739	TipAS antibiotic-recognition domain
CLFO_RS15015	PF13411	MerR HTH family regulatory protein
CLFO_RS15020	PF02687	CLFO_RS15020
CLFO_RS15025	PF00005	ABC transporter
CLFO_RS15030	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS15035	PF00005	ABC transporter
CLFO_RS15040	PF02687	CLFO_RS15040
CLFO_RS15040	PF12704	MacB-like periplasmic core domain
CLFO_RS15045	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS15045	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS15050	PF00072	Response regulator receiver domain
CLFO_RS15050	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS15055	PF02012	BNR/Asp-box repeat
CLFO_RS15060	PF00005	ABC transporter
CLFO_RS15060	PF08402	TOBE domain
CLFO_RS15065	PF12704	MacB-like periplasmic core domain
CLFO_RS15075	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15080	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15085	PF05569	BlaR1 peptidase M56
CLFO_RS15085	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS15090	PF03965	Penicillinase repressor
CLFO_RS15095	PF03358	NADPH-dependent FMN reductase
CLFO_RS15100	PF09335	CLFO_RS15100
CLFO_RS15110	PF00395	S-layer homology domain
CLFO_RS15110	PF00704	Glycosyl hydrolases family 18
CLFO_RS15115	PF02517	CAAX protease self-immunity
CLFO_RS15115	PF12679	CLFO_RS15115
CLFO_RS15120	PF12698	ABC-2 family transporter protein
CLFO_RS15125	PF00005	ABC transporter
CLFO_RS15135	PF00248	Aldo/keto reductase family
CLFO_RS15135	PF13534	4Fe-4S dicluster domain
CLFO_RS15140	PF00005	ABC transporter
CLFO_RS15140	PF12848	ABC transporter
CLFO_RS15145	PF01814	Hemerythrin HHE cation binding domain
CLFO_RS15145	PF04405	CLFO_RS15145
CLFO_RS15150	PF00258	Flavodoxin
CLFO_RS15150	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS15155	PF00027	Cyclic nucleotide-binding domain
CLFO_RS15155	PF13545	Crp-like helix-turn-helix domain
CLFO_RS15160	PF00890	FAD binding domain
CLFO_RS15160	PF04205	FMN-binding domain
CLFO_RS15165	PF03323	CLFO_RS15165
CLFO_RS15170	PF03845	CLFO_RS15170
CLFO_RS15175	PF05504	Spore germination B3/ GerAC like, C-terminal
CLFO_RS15180	PF00037	4Fe-4S binding domain
CLFO_RS15180	PF00248	Aldo/keto reductase family
CLFO_RS15185	PF00464	Serine hydroxymethyltransferase
CLFO_RS15185	PF01571	Aminomethyltransferase folate-binding domain
CLFO_RS15185	PF08669	Glycine cleavage T-protein C-terminal barrel domain
CLFO_RS15190	PF00258	Flavodoxin
CLFO_RS15190	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS15195	PF00072	Response regulator receiver domain
CLFO_RS15195	PF00196	Bacterial regulatory proteins, luxR family
CLFO_RS15200	PF07730	Histidine kinase
CLFO_RS15205	PF12698	ABC-2 family transporter protein
CLFO_RS15210	PF01061	CLFO_RS15210
CLFO_RS15215	PF00005	ABC transporter
CLFO_RS15215	PF13732	CLFO_RS15215
CLFO_RS15220	PF04199	Putative cyclase
CLFO_RS15225	PF09350	CLFO_RS15225
CLFO_RS15230	PF00158	Sigma-54 interaction domain
CLFO_RS15230	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS15235	PF00108	Thiolase, N-terminal domain
CLFO_RS15235	PF02803	Thiolase, C-terminal domain
CLFO_RS15240	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS15245	PF02447	CLFO_RS15245
CLFO_RS15250	PF01144	Coenzyme A transferase
CLFO_RS15260	PF01810	CLFO_RS15260
CLFO_RS15265	PF01037	AsnC family
CLFO_RS15265	PF13412	Winged helix-turn-helix DNA-binding
CLFO_RS15270	PF06133	Protein of unknown function (DUF964)
CLFO_RS15285	PF01869	BadF/BadG/BcrA/BcrD ATPase family
CLFO_RS15290	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
CLFO_RS15295	PF02653	CLFO_RS15295
CLFO_RS15300	PF02653	CLFO_RS15300
CLFO_RS15305	PF00005	ABC transporter
CLFO_RS15310	PF12683	Protein of unknown function (DUF3798)
CLFO_RS15315	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
CLFO_RS15325	PF11385	CLFO_RS15325
CLFO_RS15335	PF00266	Aminotransferase class-V
CLFO_RS15340	PF08546	Ketopantoate reductase PanE/ApbA C terminal
CLFO_RS15345	PF01554	MatE
CLFO_RS15355	PF01370	NAD dependent epimerase/dehydratase family
CLFO_RS15360	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS15365	PF02353	Mycolic acid cyclopropane synthetase
CLFO_RS15370	PF01797	Transposase IS200 like
CLFO_RS15380	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS15380	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS15385	PF00072	Response regulator receiver domain
CLFO_RS15385	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS15390	PF00877	NlpC/P60 family
CLFO_RS15395	PF05908	Protein of unknown function (DUF867)
CLFO_RS15400	PF05908	Protein of unknown function (DUF867)
CLFO_RS15410	PF14102	CLFO_RS15410
CLFO_RS15415	PF08245	Mur ligase middle domain
CLFO_RS15420	PF01609	Transposase DDE domain
CLFO_RS15425	PF00872	CLFO_RS15425
CLFO_RS15430	PF05958	tRNA (Uracil-5-)-methyltransferase
CLFO_RS15435	PF08241	Methyltransferase domain
CLFO_RS15445	PF01066	CDP-alcohol phosphatidyltransferase
CLFO_RS15450	PF01116	Fructose-bisphosphate aldolase class-II
CLFO_RS15455	PF00149	Calcineurin-like phosphoesterase
CLFO_RS15460	PF04607	Region found in RelA / SpoT proteins
CLFO_RS15470	PF04055	Radical SAM superfamily
CLFO_RS15470	PF16199	CLFO_RS15470
CLFO_RS15480	PF01476	LysM domain
CLFO_RS15485	PF02652	CLFO_RS15485
CLFO_RS15490	PF09861	Domain of unknown function (DUF2088)
CLFO_RS15495	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CLFO_RS15495	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CLFO_RS15500	PF01966	HD domain
CLFO_RS15510	PF03553	CLFO_RS15510
CLFO_RS15510	PF13726	CLFO_RS15510
CLFO_RS15515	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS15515	PF16658	CLFO_RS15515
CLFO_RS15520	PF00390	Malic enzyme, N-terminal domain
CLFO_RS15520	PF03949	Malic enzyme, NAD binding domain
CLFO_RS15530	PF00563	EAL domain
CLFO_RS15530	PF00672	HAMP domain
CLFO_RS15530	PF00990	GGDEF domain
CLFO_RS15530	PF02743	Cache domain
CLFO_RS15535	PF00892	EamA-like transporter family
CLFO_RS15540	PF12682	Flavodoxin
CLFO_RS15545	PF01381	Helix-turn-helix
CLFO_RS15545	PF07883	Cupin domain
CLFO_RS15550	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
CLFO_RS15555	PF04308	CLFO_RS15555
CLFO_RS15560	PF00515	Tetratricopeptide repeat
CLFO_RS15560	PF07719	Tetratricopeptide repeat
CLFO_RS15560	PF13181	Tetratricopeptide repeat
CLFO_RS15565	PF04293	CLFO_RS15565
CLFO_RS15570	PF04285	CLFO_RS15570
CLFO_RS15575	PF06798	CLFO_RS15575
CLFO_RS15575	PF08298	PrkA AAA domain
CLFO_RS15580	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS15580	PF10114	CLFO_RS15580
CLFO_RS15585	PF01584	CheW-like domain
CLFO_RS15590	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS15590	PF00672	HAMP domain
CLFO_RS15595	PF00575	S1 RNA binding domain
CLFO_RS15595	PF13509	S1 domain
CLFO_RS15600	PF00873	AcrB/AcrD/AcrF family
CLFO_RS15605	PF13533	Biotin-lipoyl like
CLFO_RS15605	PF16576	CLFO_RS15605
CLFO_RS15610	PF00005	ABC transporter
CLFO_RS15610	PF00664	ABC transporter transmembrane region
CLFO_RS15615	PF00005	ABC transporter
CLFO_RS15615	PF00664	ABC transporter transmembrane region
CLFO_RS15620	PF00072	Response regulator receiver domain
CLFO_RS15620	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS15625	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS15625	PF00672	HAMP domain
CLFO_RS15625	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS15630	PF09582	CLFO_RS15630
CLFO_RS15635	PF01627	Hpt domain
CLFO_RS15640	PF00072	Response regulator receiver domain
CLFO_RS15640	PF13487	HD domain
CLFO_RS15645	PF00072	Response regulator receiver domain
CLFO_RS15645	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS15645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS15650	PF08495	CLFO_RS15650
CLFO_RS15650	PF10442	CLFO_RS15650
CLFO_RS15655	PF01276	Orn/Lys/Arg decarboxylase, major domain
CLFO_RS15655	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
CLFO_RS15660	PF00072	Response regulator receiver domain
CLFO_RS15660	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS15660	PF00990	GGDEF domain
CLFO_RS15660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS15660	PF07695	CLFO_RS15660
CLFO_RS15670	PF16576	CLFO_RS15670
CLFO_RS15675	PF02687	CLFO_RS15675
CLFO_RS15680	PF00005	ABC transporter
CLFO_RS15685	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS15695	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS15705	PF05504	Spore germination B3/ GerAC like, C-terminal
CLFO_RS15710	PF03323	CLFO_RS15710
CLFO_RS15715	PF03845	CLFO_RS15715
CLFO_RS15720	PF09388	Spo0E like sporulation regulatory protein
CLFO_RS15725	PF01381	Helix-turn-helix
CLFO_RS15735	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15740	PF00005	ABC transporter
CLFO_RS15745	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
CLFO_RS15750	PF12952	CLFO_RS15750
CLFO_RS15755	PF12952	CLFO_RS15755
CLFO_RS15760	PF09818	Predicted ATPase of the ABC class
CLFO_RS15765	PF13799	CLFO_RS15765
CLFO_RS15770	PF13181	Tetratricopeptide repeat
CLFO_RS15775	PF13181	Tetratricopeptide repeat
CLFO_RS15775	PF14559	Tetratricopeptide repeat
CLFO_RS15780	PF01973	CLFO_RS15780
CLFO_RS15795	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS15800	PF02348	Cytidylyltransferase
CLFO_RS15810	PF00483	Nucleotidyl transferase
CLFO_RS15810	PF00571	CBS domain
CLFO_RS15815	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS15820	PF03102	NeuB family
CLFO_RS15825	PF02350	UDP-N-acetylglucosamine 2-epimerase
CLFO_RS15830	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
CLFO_RS15835	PF16363	CLFO_RS15835
CLFO_RS15840	PF13799	CLFO_RS15840
CLFO_RS15845	PF00005	ABC transporter
CLFO_RS15845	PF00664	ABC transporter transmembrane region
CLFO_RS15850	PF00005	ABC transporter
CLFO_RS15850	PF00664	ABC transporter transmembrane region
CLFO_RS15855	PF08241	Methyltransferase domain
CLFO_RS15865	PF04542	Sigma-70 region 2
CLFO_RS15865	PF08281	Sigma-70, region 4
CLFO_RS15870	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15870	PF12911	CLFO_RS15870
CLFO_RS15875	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15880	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS15885	PF08241	Methyltransferase domain
CLFO_RS15890	PF13847	Methyltransferase domain
CLFO_RS15895	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS15900	PF00005	ABC transporter
CLFO_RS15900	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS15905	PF00005	ABC transporter
CLFO_RS15905	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS15910	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15910	PF12911	CLFO_RS15910
CLFO_RS15915	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15920	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
CLFO_RS15925	PF00005	ABC transporter
CLFO_RS15925	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS15930	PF00005	ABC transporter
CLFO_RS15935	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS15940	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15945	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS15950	PF05161	MOFRL family
CLFO_RS15950	PF13660	Domain of unknown function (DUF4147)
CLFO_RS15955	PF00294	pfkB family carbohydrate kinase
CLFO_RS15960	PF00107	Zinc-binding dehydrogenase
CLFO_RS15960	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS15965	PF00356	Bacterial regulatory proteins, lacI family
CLFO_RS15965	PF13377	Periplasmic binding protein-like domain
CLFO_RS15970	PF05949	Bacterial protein of unknown function (DUF881)
CLFO_RS15975	PF00857	Isochorismatase family
CLFO_RS15980	PF06508	Queuosine biosynthesis protein QueC
CLFO_RS15985	PF04055	Radical SAM superfamily
CLFO_RS15985	PF13394	4Fe-4S single cluster domain
CLFO_RS15990	PF01242	6-pyruvoyl tetrahydropterin synthase
CLFO_RS15995	PF01554	MatE
CLFO_RS16000	PF00005	ABC transporter
CLFO_RS16000	PF00664	ABC transporter transmembrane region
CLFO_RS16010	PF12833	Helix-turn-helix domain
CLFO_RS16015	PF01242	6-pyruvoyl tetrahydropterin synthase
CLFO_RS16020	PF01869	BadF/BadG/BcrA/BcrD ATPase family
CLFO_RS16025	PF06050	2-hydroxyglutaryl-CoA dehydratase, D-component
CLFO_RS16030	PF08241	Methyltransferase domain
CLFO_RS16035	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS16040	PF09084	NMT1/THI5 like
CLFO_RS16045	PF00005	ABC transporter
CLFO_RS16050	PF07883	Cupin domain
CLFO_RS16055	PF01869	BadF/BadG/BcrA/BcrD ATPase family
CLFO_RS16055	PF09989	CLFO_RS16055
CLFO_RS16060	PF00027	Cyclic nucleotide-binding domain
CLFO_RS16060	PF13545	Crp-like helix-turn-helix domain
CLFO_RS16065	PF00122	E1-E2 ATPase
CLFO_RS16065	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS16095	PF00122	E1-E2 ATPase
CLFO_RS16095	PF00689	Cation transporting ATPase, C-terminus
CLFO_RS16095	PF00690	Cation transporter/ATPase, N-terminus
CLFO_RS16095	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS16100	PF00155	Aminotransferase class I and II
CLFO_RS16105	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS16105	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS16105	PF12860	CLFO_RS16105
CLFO_RS16105	PF17159	CLFO_RS16105
CLFO_RS16110	PF13561	Enoyl-(Acyl carrier protein) reductase
CLFO_RS16115	PF00890	FAD binding domain
CLFO_RS16120	PF00107	Zinc-binding dehydrogenase
CLFO_RS16120	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS16125	PF06808	CLFO_RS16125
CLFO_RS16130	PF04290	CLFO_RS16130
CLFO_RS16135	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS16140	PF00356	Bacterial regulatory proteins, lacI family
CLFO_RS16140	PF13377	Periplasmic binding protein-like domain
CLFO_RS16145	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
CLFO_RS16150	PF04015	CLFO_RS16150
CLFO_RS16155	PF00795	Carbon-nitrogen hydrolase
CLFO_RS16155	PF02540	NAD synthase
CLFO_RS16160	PF01047	MarR family
CLFO_RS16165	PF00005	ABC transporter
CLFO_RS16165	PF00664	ABC transporter transmembrane region
CLFO_RS16170	PF00005	ABC transporter
CLFO_RS16170	PF00664	ABC transporter transmembrane region
CLFO_RS16175	PF14512	Putative TM nitroreductase
CLFO_RS16180	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CLFO_RS16180	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CLFO_RS16185	PF01061	CLFO_RS16185
CLFO_RS16190	PF00005	ABC transporter
CLFO_RS16195	PF10502	Signal peptidase, peptidase S26
CLFO_RS16200	PF00488	MutS domain V
CLFO_RS16205	PF03734	L,D-transpeptidase catalytic domain
CLFO_RS16215	PF05569	BlaR1 peptidase M56
CLFO_RS16220	PF03965	Penicillinase repressor
CLFO_RS16225	PF00082	Subtilase family
CLFO_RS16235	PF00082	Subtilase family
CLFO_RS16245	PF13586	CLFO_RS16245
CLFO_RS16250	PF13340	CLFO_RS16250
CLFO_RS16265	PF03811	CLFO_RS16265
CLFO_RS16275	PF01609	Transposase DDE domain
CLFO_RS16280	PF07242	CLFO_RS16280
CLFO_RS16285	PF00005	ABC transporter
CLFO_RS16290	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CLFO_RS16290	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CLFO_RS16295	PF10263	CLFO_RS16295
CLFO_RS16300	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS16300	PF05651	CLFO_RS16300
CLFO_RS16310	PF02579	Dinitrogenase iron-molybdenum cofactor
CLFO_RS16310	PF10609	ParA/MinD ATPase like
CLFO_RS16315	PF00037	4Fe-4S binding domain
CLFO_RS16315	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS16320	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
CLFO_RS16320	PF13187	4Fe-4S dicluster domain
CLFO_RS16325	PF02579	Dinitrogenase iron-molybdenum cofactor
CLFO_RS16330	PF02001	CLFO_RS16330
CLFO_RS16340	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS16345	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS16350	PF02310	B12 binding domain
CLFO_RS16350	PF02607	B12 binding domain
CLFO_RS16355	PF10710	CLFO_RS16355
CLFO_RS16360	PF00578	AhpC/TSA family
CLFO_RS16365	PF00817	impB/mucB/samB family
CLFO_RS16365	PF11798	IMS family HHH motif
CLFO_RS16365	PF11799	impB/mucB/samB family C-terminal domain
CLFO_RS16370	PF02696	CLFO_RS16370
CLFO_RS16385	PF01098	CLFO_RS16385
CLFO_RS16390	PF03551	Transcriptional regulator PadR-like family
CLFO_RS16395	PF13307	Helicase C-terminal domain
CLFO_RS16400	PF05437	CLFO_RS16400
CLFO_RS16405	PF03591	CLFO_RS16405
CLFO_RS16415	PF00155	Aminotransferase class I and II
CLFO_RS16415	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS16420	PF00291	Pyridoxal-phosphate dependent enzyme
CLFO_RS16420	PF14821	Threonine synthase N terminus
CLFO_RS16430	PF13649	Methyltransferase domain
CLFO_RS16435	PF13393	Histidyl-tRNA synthetase
CLFO_RS16440	PF00892	EamA-like transporter family
CLFO_RS16445	PF10100	CLFO_RS16445
CLFO_RS16450	PF03059	Nicotianamine synthase protein
CLFO_RS16460	PF00005	ABC transporter
CLFO_RS16465	PF00005	ABC transporter
CLFO_RS16470	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS16470	PF12911	CLFO_RS16470
CLFO_RS16475	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS16480	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS16485	PF00936	BMC domain
CLFO_RS16490	PF06130	CLFO_RS16490
CLFO_RS16495	PF00171	Aldehyde dehydrogenase family
CLFO_RS16500	PF00936	BMC domain
CLFO_RS16505	PF06249	Ethanolamine utilisation protein EutQ
CLFO_RS16510	PF00936	BMC domain
CLFO_RS16515	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS16515	PF10531	SLBB domain
CLFO_RS16515	PF13375	RnfC Barrel sandwich hybrid domain
CLFO_RS16515	PF13534	4Fe-4S dicluster domain
CLFO_RS16520	PF03319	Ethanolamine utilisation protein EutN/carboxysome
CLFO_RS16525	PF00936	BMC domain
CLFO_RS16530	PF11104	Type IV pilus assembly protein PilM;
CLFO_RS16540	PF04055	Radical SAM superfamily
CLFO_RS16540	PF13353	4Fe-4S single cluster domain
CLFO_RS16545	PF01695	IstB-like ATP binding protein
CLFO_RS16550	PF00665	Integrase core domain
CLFO_RS16555	PF01228	Glycine radical
CLFO_RS16555	PF02901	Pyruvate formate lyase
CLFO_RS16560	PF00936	BMC domain
CLFO_RS16565	PF00936	BMC domain
CLFO_RS16580	PF01633	Choline/ethanolamine kinase
CLFO_RS16585	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS16590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS16590	PF06580	CLFO_RS16590
CLFO_RS16590	PF10114	CLFO_RS16590
CLFO_RS16595	PF00072	Response regulator receiver domain
CLFO_RS16595	PF12833	Helix-turn-helix domain
CLFO_RS16600	PF01235	CLFO_RS16600
CLFO_RS16610	PF07883	Cupin domain
CLFO_RS16615	PF01476	LysM domain
CLFO_RS16625	PF14045	CLFO_RS16625
CLFO_RS16630	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLFO_RS16630	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
CLFO_RS16635	PF00941	FAD binding domain in molybdopterin dehydrogenase
CLFO_RS16640	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS16640	PF01799	[2Fe-2S] binding domain
CLFO_RS16650	PF01522	Polysaccharide deacetylase
CLFO_RS16655	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CLFO_RS16660	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS16675	PF00456	Transketolase, thiamine diphosphate binding domain
CLFO_RS16675	PF02779	Transketolase, pyrimidine binding domain
CLFO_RS16675	PF02780	Transketolase, C-terminal domain
CLFO_RS16680	PF13347	MFS/sugar transport protein
CLFO_RS16685	PF00365	Phosphofructokinase
CLFO_RS16690	PF02734	DAK2 domain
CLFO_RS16695	PF02733	Dak1 domain
CLFO_RS16700	PF02502	Ribose/Galactose Isomerase
CLFO_RS16705	PF00107	Zinc-binding dehydrogenase
CLFO_RS16705	PF08240	Alcohol dehydrogenase GroES-like domain
CLFO_RS16710	PF01547	Bacterial extracellular solute-binding protein
CLFO_RS16715	PF00072	Response regulator receiver domain
CLFO_RS16715	PF12833	Helix-turn-helix domain
CLFO_RS16720	PF00672	HAMP domain
CLFO_RS16720	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS16720	PF02743	Cache domain
CLFO_RS16720	PF06580	CLFO_RS16720
CLFO_RS16735	PF00106	short chain dehydrogenase
CLFO_RS16740	PF05067	Manganese containing catalase
CLFO_RS16745	PF10710	CLFO_RS16745
CLFO_RS16750	PF11553	Protein of unknown function (DUF3231)
CLFO_RS16755	PF00300	Histidine phosphatase superfamily (branch 1)
CLFO_RS16765	PF09860	CLFO_RS16765
CLFO_RS16770	PF06445	GyrI-like small molecule binding domain
CLFO_RS16770	PF12833	Helix-turn-helix domain
CLFO_RS16775	PF01636	Phosphotransferase enzyme family
CLFO_RS16780	PF07690	Major Facilitator Superfamily
CLFO_RS16795	PF12787	CLFO_RS16795
CLFO_RS16800	PF12787	CLFO_RS16800
CLFO_RS16810	PF00391	PEP-utilising enzyme, mobile domain
CLFO_RS16810	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CLFO_RS16825	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS16825	PF00672	HAMP domain
CLFO_RS16825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS16830	PF00072	Response regulator receiver domain
CLFO_RS16830	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS16835	PF01522	Polysaccharide deacetylase
CLFO_RS16840	PF01797	Transposase IS200 like
CLFO_RS16845	PF03816	Cell envelope-related transcriptional attenuator domain
CLFO_RS16850	PF00206	Lyase
CLFO_RS16850	PF10415	Fumarase C C-terminus
CLFO_RS16855	PF13517	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
CLFO_RS16860	PF07690	Major Facilitator Superfamily
CLFO_RS16865	PF00005	ABC transporter
CLFO_RS16870	PF01032	FecCD transport family
CLFO_RS16875	PF01032	FecCD transport family
CLFO_RS16880	PF01497	Periplasmic binding protein
CLFO_RS16885	PF12833	Helix-turn-helix domain
CLFO_RS16905	PF04055	Radical SAM superfamily
CLFO_RS16910	PF00583	Acetyltransferase (GNAT) family
CLFO_RS16910	PF14268	CLFO_RS16910
CLFO_RS16920	PF13280	CLFO_RS16920
CLFO_RS16925	PF01385	CLFO_RS16925
CLFO_RS16925	PF07282	CLFO_RS16925
CLFO_RS16930	PF01797	Transposase IS200 like
CLFO_RS16935	PF03050	CLFO_RS16935
CLFO_RS16935	PF13005	CLFO_RS16935
CLFO_RS16940	PF05717	CLFO_RS16940
CLFO_RS16970	PF14205	CLFO_RS16970
CLFO_RS16975	PF01695	IstB-like ATP binding protein
CLFO_RS16980	PF00665	Integrase core domain
CLFO_RS16985	PF08281	Sigma-70, region 4
CLFO_RS16990	PF00239	Resolvase, N terminal domain
CLFO_RS16990	PF07508	Recombinase
CLFO_RS16990	PF13408	Recombinase zinc beta ribbon domain
CLFO_RS17035	PF14107	CLFO_RS17035
CLFO_RS17035	PF14412	CLFO_RS17035
CLFO_RS17040	PF08279	HTH domain
CLFO_RS17040	PF13280	CLFO_RS17040
CLFO_RS17045	PF00990	GGDEF domain
CLFO_RS17050	PF13129	CLFO_RS17050
CLFO_RS17055	PF08291	Peptidase M15
CLFO_RS17070	PF11148	CLFO_RS17070
CLFO_RS17090	PF05717	CLFO_RS17090
CLFO_RS17095	PF03050	CLFO_RS17095
CLFO_RS17095	PF13005	CLFO_RS17095
CLFO_RS17105	PF01844	HNH endonuclease
CLFO_RS17110	PF01863	Protein of unknown function DUF45
CLFO_RS17115	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
CLFO_RS17115	PF04851	Type III restriction enzyme, res subunit
CLFO_RS17120	PF01420	Type I restriction modification DNA specificity domain
CLFO_RS17125	PF02384	N-6 DNA Methylase
CLFO_RS17125	PF12161	HsdM N-terminal domain
CLFO_RS17135	PF10593	CLFO_RS17135
CLFO_RS17140	PF01420	Type I restriction modification DNA specificity domain
CLFO_RS17145	PF02384	N-6 DNA Methylase
CLFO_RS17165	PF00069	Protein kinase domain
CLFO_RS17165	PF01966	HD domain
CLFO_RS17190	PF01807	CHC2 zinc finger
CLFO_RS17190	PF06048	CLFO_RS17190
CLFO_RS17210	PF12728	Helix-turn-helix domain
CLFO_RS17215	PF01381	Helix-turn-helix
CLFO_RS17220	PF01381	Helix-turn-helix
CLFO_RS17225	PF06114	Domain of unknown function (DUF955)
CLFO_RS17230	PF00589	Phage integrase family
CLFO_RS17230	PF14657	CLFO_RS17230
CLFO_RS17230	PF14659	Phage integrase, N-terminal SAM-like domain
CLFO_RS17235	PF00239	Resolvase, N terminal domain
CLFO_RS17235	PF07508	Recombinase
CLFO_RS17235	PF13408	Recombinase zinc beta ribbon domain
CLFO_RS17240	PF12645	CLFO_RS17240
CLFO_RS17245	PF08281	Sigma-70, region 4
CLFO_RS17250	PF05713	CLFO_RS17250
CLFO_RS17255	PF03432	CLFO_RS17255
CLFO_RS17260	PF10593	CLFO_RS17260
CLFO_RS17265	PF09565	CLFO_RS17265
CLFO_RS17270	PF00145	C-5 cytosine-specific DNA methylase
CLFO_RS17280	PF07804	HipA-like C-terminal domain
CLFO_RS17280	PF16948	CLFO_RS17280
CLFO_RS17290	PF12844	Helix-turn-helix domain
CLFO_RS17295	PF08845	CLFO_RS17295
CLFO_RS17310	PF08401	CLFO_RS17310
CLFO_RS17325	PF13599	Pentapeptide repeats (9 copies)
CLFO_RS17330	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)
CLFO_RS17335	PF01131	DNA topoisomerase
CLFO_RS17335	PF01751	Toprim domain
CLFO_RS17335	PF13342	CLFO_RS17335
CLFO_RS17340	PF14195	CLFO_RS17340
CLFO_RS17345	PF14283	CLFO_RS17345
CLFO_RS17360	PF12750	CLFO_RS17360
CLFO_RS17365	PF01551	Peptidase family M23
CLFO_RS17370	PF12846	AAA-like domain
CLFO_RS17375	PF12666	CLFO_RS17375
CLFO_RS17385	PF02534	Type IV secretory system Conjugative DNA transfer
CLFO_RS17390	PF12687	CLFO_RS17390
CLFO_RS17395	PF11171	CLFO_RS17395
CLFO_RS17410	PF01938	TRAM domain
CLFO_RS17410	PF05958	tRNA (Uracil-5-)-methyltransferase
CLFO_RS17415	PF10646	CLFO_RS17415
CLFO_RS17420	PF04186	CLFO_RS17420
CLFO_RS17425	PF03061	Thioesterase superfamily
CLFO_RS17430	PF00224	Pyruvate kinase, barrel domain
CLFO_RS17430	PF00391	PEP-utilising enzyme, mobile domain
CLFO_RS17430	PF02887	Pyruvate kinase, alpha/beta domain
CLFO_RS17435	PF00365	Phosphofructokinase
CLFO_RS17445	PF01336	OB-fold nucleic acid binding domain
CLFO_RS17445	PF14579	Helix-hairpin-helix motif
CLFO_RS17455	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS17465	PF02811	PHP domain
CLFO_RS17465	PF07733	Bacterial DNA polymerase III alpha subunit
CLFO_RS17470	PF07796	CLFO_RS17470
CLFO_RS17475	PF07690	Major Facilitator Superfamily
CLFO_RS17480	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS17480	PF14574	Domain of unknown function (DUF4445)
CLFO_RS17485	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS17485	PF07702	UTRA domain
CLFO_RS17490	PF02310	B12 binding domain
CLFO_RS17490	PF02607	B12 binding domain
CLFO_RS17495	PF02310	B12 binding domain
CLFO_RS17495	PF02607	B12 binding domain
CLFO_RS17500	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS17505	PF00474	Sodium:solute symporter family
CLFO_RS17515	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS17520	PF02310	B12 binding domain
CLFO_RS17520	PF02607	B12 binding domain
CLFO_RS17525	PF01208	Uroporphyrinogen decarboxylase (URO-D)
CLFO_RS17530	PF02310	B12 binding domain
CLFO_RS17530	PF02607	B12 binding domain
CLFO_RS17535	PF00809	Pterin binding enzyme
CLFO_RS17540	PF03704	Bacterial transcriptional activator domain
CLFO_RS17540	PF13191	AAA ATPase domain
CLFO_RS17540	PF13432	Tetratricopeptide repeat
CLFO_RS17545	PF04961	Formiminotransferase-cyclodeaminase
CLFO_RS17550	PF01979	Amidohydrolase family
CLFO_RS17555	PF02971	Formiminotransferase domain
CLFO_RS17555	PF07837	Formiminotransferase domain, N-terminal subdomain
CLFO_RS17560	PF01175	Urocanase
CLFO_RS17565	PF01966	HD domain
CLFO_RS17570	PF02650	WhiA C-terminal HTH domain
CLFO_RS17570	PF10298	WhiA N-terminal LAGLIDADG-like domain
CLFO_RS17570	PF14527	WhiA LAGLIDADG-like domain
CLFO_RS17575	PF07561	CLFO_RS17575
CLFO_RS17580	PF00293	NUDIX domain
CLFO_RS17585	PF01933	Uncharacterised protein family UPF0052
CLFO_RS17590	PF03668	CLFO_RS17590
CLFO_RS17595	PF01565	FAD binding domain
CLFO_RS17595	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
CLFO_RS17600	PF13416	Bacterial extracellular solute-binding protein
CLFO_RS17610	PF04055	Radical SAM superfamily
CLFO_RS17610	PF06463	Molybdenum Cofactor Synthesis C
CLFO_RS17610	PF13353	4Fe-4S single cluster domain
CLFO_RS17615	PF02634	FdhD/NarQ family
CLFO_RS17620	PF02915	Rubrerythrin
CLFO_RS17630	PF00037	4Fe-4S binding domain
CLFO_RS17630	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS17630	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS17630	PF10531	SLBB domain
CLFO_RS17630	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLFO_RS17640	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS17645	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CLFO_RS17645	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CLFO_RS17645	PF13510	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS17645	PF14697	4Fe-4S dicluster domain
CLFO_RS17650	PF00037	4Fe-4S binding domain
CLFO_RS17650	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS17650	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
CLFO_RS17650	PF10531	SLBB domain
CLFO_RS17650	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLFO_RS17660	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
CLFO_RS17665	PF02603	HPr Serine kinase N terminus
CLFO_RS17665	PF07475	HPr Serine kinase C-terminal domain
CLFO_RS17670	PF01541	GIY-YIG catalytic domain
CLFO_RS17670	PF02151	UvrB/uvrC motif
CLFO_RS17670	PF08459	UvrC Helix-hairpin-helix N-terminal
CLFO_RS17670	PF12826	Helix-hairpin-helix motif
CLFO_RS17675	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS17680	PF00005	ABC transporter
CLFO_RS17685	PF00271	Helicase conserved C-terminal domain
CLFO_RS17685	PF02151	UvrB/uvrC motif
CLFO_RS17685	PF04851	Type III restriction enzyme, res subunit
CLFO_RS17685	PF12344	Ultra-violet resistance protein B
CLFO_RS17690	PF03572	Peptidase family S41
CLFO_RS17690	PF13180	PDZ domain
CLFO_RS17695	PF01551	Peptidase family M23
CLFO_RS17700	PF02687	CLFO_RS17700
CLFO_RS17705	PF00005	ABC transporter
CLFO_RS17710	PF01812	5-formyltetrahydrofolate cyclo-ligase family
CLFO_RS17715	PF00072	Response regulator receiver domain
CLFO_RS17715	PF00158	Sigma-54 interaction domain
CLFO_RS17715	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS17720	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS17720	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS17725	PF12773	CLFO_RS17725
CLFO_RS17735	PF00122	E1-E2 ATPase
CLFO_RS17735	PF00403	Heavy-metal-associated domain
CLFO_RS17735	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS17750	PF07907	CLFO_RS17750
CLFO_RS17755	PF05116	Sucrose-6F-phosphate phosphohydrolase
CLFO_RS17760	PF11202	CLFO_RS17760
CLFO_RS17760	PF15608	CLFO_RS17760
CLFO_RS17765	PF12500	CLFO_RS17765
CLFO_RS17765	PF15609	CLFO_RS17765
CLFO_RS17770	PF15617	CLFO_RS17770
CLFO_RS17775	PF01987	Mitochondrial biogenesis AIM24
CLFO_RS17780	PF14196	CLFO_RS17780
CLFO_RS17785	PF00005	ABC transporter
CLFO_RS17790	PF00005	ABC transporter
CLFO_RS17790	PF12399	Branched-chain amino acid ATP-binding cassette transporter
CLFO_RS17795	PF02653	CLFO_RS17795
CLFO_RS17800	PF02653	CLFO_RS17800
CLFO_RS17805	PF13458	Periplasmic binding protein
CLFO_RS17810	PF05362	Lon protease (S16) C-terminal proteolytic domain
CLFO_RS17810	PF13654	AAA domain
CLFO_RS17815	PF01476	LysM domain
CLFO_RS17820	PF00005	ABC transporter
CLFO_RS17820	PF00571	CBS domain
CLFO_RS17825	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS17830	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
CLFO_RS17835	PF09992	Predicted periplasmic protein (DUF2233)
CLFO_RS17840	PF14343	CLFO_RS17840
CLFO_RS17845	PF02779	Transketolase, pyrimidine binding domain
CLFO_RS17845	PF02780	Transketolase, C-terminal domain
CLFO_RS17850	PF00456	Transketolase, thiamine diphosphate binding domain
CLFO_RS17855	PF02588	CLFO_RS17855
CLFO_RS17855	PF10035	Uncharacterized protein conserved in bacteria (DUF2179)
CLFO_RS17860	PF03808	CLFO_RS17860
CLFO_RS17865	PF04230	CLFO_RS17865
CLFO_RS17875	PF01757	CLFO_RS17875
CLFO_RS17885	PF02452	PemK-like protein
CLFO_RS17890	PF01402	Ribbon-helix-helix protein, copG family
CLFO_RS17895	PF00842	Alanine racemase, C-terminal domain
CLFO_RS17895	PF01168	Alanine racemase, N-terminal domain
CLFO_RS17900	PF17131	CLFO_RS17900
CLFO_RS17905	PF01648	4'-phosphopantetheinyl transferase superfamily
CLFO_RS17920	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CLFO_RS17925	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CLFO_RS17925	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
CLFO_RS17930	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
CLFO_RS17935	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
CLFO_RS17940	PF04039	CLFO_RS17940
CLFO_RS17950	PF13244	CLFO_RS17950
CLFO_RS17955	PF03334	CLFO_RS17955
CLFO_RS17960	PF04066	CLFO_RS17960
CLFO_RS17965	PF01899	CLFO_RS17965
CLFO_RS17980	PF00571	CBS domain
CLFO_RS17985	PF13690	Chemotaxis phosphatase CheX
CLFO_RS17990	PF00156	Phosphoribosyl transferase domain
CLFO_RS17995	PF00580	UvrD/REP helicase N-terminal domain
CLFO_RS17995	PF12705	PD-(D/E)XK nuclease superfamily
CLFO_RS17995	PF13361	UvrD-like helicase C-terminal domain
CLFO_RS18000	PF12705	PD-(D/E)XK nuclease superfamily
CLFO_RS18000	PF13361	UvrD-like helicase C-terminal domain
CLFO_RS18010	PF01336	OB-fold nucleic acid binding domain
CLFO_RS18015	PF02915	Rubrerythrin
CLFO_RS18020	PF02666	CLFO_RS18020
CLFO_RS18025	PF00156	Phosphoribosyl transferase domain
CLFO_RS18030	PF01180	Dihydroorotate dehydrogenase
CLFO_RS18035	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
CLFO_RS18040	PF02142	MGS-like domain
CLFO_RS18040	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
CLFO_RS18040	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CLFO_RS18045	PF00117	Glutamine amidotransferase class-I
CLFO_RS18045	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
CLFO_RS18050	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
CLFO_RS18055	PF01979	Amidohydrolase family
CLFO_RS18060	PF01261	Xylose isomerase-like TIM barrel
CLFO_RS18065	PF00180	Isocitrate/isopropylmalate dehydrogenase
CLFO_RS18070	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
CLFO_RS18070	PF01842	ACT domain
CLFO_RS18070	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
CLFO_RS18075	PF02417	CLFO_RS18075
CLFO_RS18080	PF02417	CLFO_RS18080
CLFO_RS18085	PF01134	Glucose inhibited division protein A
CLFO_RS18090	PF03486	HI0933-like protein
CLFO_RS18095	PF13404	AsnC-type helix-turn-helix domain
CLFO_RS18100	PF13404	AsnC-type helix-turn-helix domain
CLFO_RS18105	PF04055	Radical SAM superfamily
CLFO_RS18105	PF13186	Iron-sulfur cluster-binding domain
CLFO_RS18105	PF13353	4Fe-4S single cluster domain
CLFO_RS18110	PF04055	Radical SAM superfamily
CLFO_RS18110	PF13353	4Fe-4S single cluster domain
CLFO_RS18120	PF08960	Domain of unknown function (DUF1874)
CLFO_RS18125	PF01522	Polysaccharide deacetylase
CLFO_RS18130	PF01739	CheR methyltransferase, SAM binding domain
CLFO_RS18130	PF03705	CheR methyltransferase, all-alpha domain
CLFO_RS18135	PF00072	Response regulator receiver domain
CLFO_RS18135	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS18135	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18135	PF12729	CLFO_RS18135
CLFO_RS18135	PF13185	GAF domain
CLFO_RS18140	PF00072	Response regulator receiver domain
CLFO_RS18140	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS18140	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18150	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18150	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
CLFO_RS18155	PF00072	Response regulator receiver domain
CLFO_RS18155	PF08279	HTH domain
CLFO_RS18160	PF00890	FAD binding domain
CLFO_RS18165	PF13180	PDZ domain
CLFO_RS18165	PF13365	Trypsin-like peptidase domain
CLFO_RS18175	PF02915	Rubrerythrin
CLFO_RS18180	PF00128	Alpha amylase, catalytic domain
CLFO_RS18185	PF00343	Carbohydrate phosphorylase
CLFO_RS18190	PF00534	Glycosyl transferases group 1
CLFO_RS18190	PF08323	Starch synthase catalytic domain
CLFO_RS18195	PF00483	Nucleotidyl transferase
CLFO_RS18200	PF00483	Nucleotidyl transferase
CLFO_RS18205	PF00128	Alpha amylase, catalytic domain
CLFO_RS18205	PF02806	Alpha amylase, C-terminal all-beta domain
CLFO_RS18205	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CLFO_RS18210	PF10688	CLFO_RS18210
CLFO_RS18215	PF03323	CLFO_RS18215
CLFO_RS18220	PF05504	Spore germination B3/ GerAC like, C-terminal
CLFO_RS18230	PF03845	CLFO_RS18230
CLFO_RS18235	PF02446	4-alpha-glucanotransferase
CLFO_RS18240	PF04542	Sigma-70 region 2
CLFO_RS18240	PF08281	Sigma-70, region 4
CLFO_RS18245	PF13490	Putative zinc-finger
CLFO_RS18255	PF07875	CLFO_RS18255
CLFO_RS18265	PF00633	Helix-hairpin-helix motif
CLFO_RS18265	PF00730	HhH-GPD superfamily base excision DNA repair protein
CLFO_RS18265	PF14815	NUDIX domain
CLFO_RS18270	PF03167	Uracil DNA glycosylase superfamily
CLFO_RS18275	PF02834	LigT like Phosphoesterase
CLFO_RS18280	PF13673	Acetyltransferase (GNAT) domain
CLFO_RS18285	PF00892	EamA-like transporter family
CLFO_RS18290	PF12791	CLFO_RS18290
CLFO_RS18295	PF04542	Sigma-70 region 2
CLFO_RS18300	PF00999	Sodium/hydrogen exchanger family
CLFO_RS18310	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS18310	PF00672	HAMP domain
CLFO_RS18310	PF17201	CLFO_RS18310
CLFO_RS18325	PF00999	Sodium/hydrogen exchanger family
CLFO_RS18330	PF03773	CLFO_RS18330
CLFO_RS18330	PF13370	4Fe-4S single cluster domain
CLFO_RS18335	PF03773	CLFO_RS18335
CLFO_RS18345	PF00027	Cyclic nucleotide-binding domain
CLFO_RS18345	PF13545	Crp-like helix-turn-helix domain
CLFO_RS18350	PF04073	Aminoacyl-tRNA editing domain
CLFO_RS18355	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS18355	PF12724	Flavodoxin domain
CLFO_RS18360	PF00005	ABC transporter
CLFO_RS18360	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS18365	PF00005	ABC transporter
CLFO_RS18365	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
CLFO_RS18370	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS18370	PF12911	CLFO_RS18370
CLFO_RS18375	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS18380	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
CLFO_RS18385	PF01554	MatE
CLFO_RS18390	PF12802	MarR family
CLFO_RS18395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18400	PF00072	Response regulator receiver domain
CLFO_RS18400	PF08664	CLFO_RS18400
CLFO_RS18405	PF03616	CLFO_RS18405
CLFO_RS18410	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
CLFO_RS18415	PF03802	CLFO_RS18415
CLFO_RS18420	PF08218	Citrate lyase ligase C-terminal domain
CLFO_RS18420	PF13673	Acetyltransferase (GNAT) domain
CLFO_RS18425	PF04223	Citrate lyase, alpha subunit (CitF)
CLFO_RS18430	PF03328	HpcH/HpaI aldolase/citrate lyase family
CLFO_RS18435	PF06857	CLFO_RS18435
CLFO_RS18440	PF05683	Fumarase C-terminus
CLFO_RS18445	PF05681	CLFO_RS18445
CLFO_RS18450	PF05034	Methylaspartate ammonia-lyase N-terminus
CLFO_RS18450	PF07476	Methylaspartate ammonia-lyase C-terminus
CLFO_RS18455	PF06368	Methylaspartate mutase E chain (MutE)
CLFO_RS18460	PF13941	CLFO_RS18460
CLFO_RS18465	PF02310	B12 binding domain
CLFO_RS18475	PF00111	2Fe-2S iron-sulfur cluster binding domain
CLFO_RS18475	PF14574	Domain of unknown function (DUF4445)
CLFO_RS18480	PF02310	B12 binding domain
CLFO_RS18480	PF02607	B12 binding domain
CLFO_RS18485	PF02492	CobW/HypB/UreG, nucleotide-binding domain
CLFO_RS18485	PF07683	Cobalamin synthesis protein cobW C-terminal domain
CLFO_RS18490	PF12176	Methanol-cobalamin methyltransferase B subunit
CLFO_RS18495	PF00809	Pterin binding enzyme
CLFO_RS18500	PF02310	B12 binding domain
CLFO_RS18500	PF02607	B12 binding domain
CLFO_RS18505	PF10114	CLFO_RS18505
CLFO_RS18505	PF12833	Helix-turn-helix domain
CLFO_RS18510	PF00072	Response regulator receiver domain
CLFO_RS18515	PF00072	Response regulator receiver domain
CLFO_RS18515	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS18515	PF01627	Hpt domain
CLFO_RS18515	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18515	PF08448	PAS fold
CLFO_RS18515	PF13426	PAS domain
CLFO_RS18520	PF00072	Response regulator receiver domain
CLFO_RS18520	PF01339	CheB methylesterase
CLFO_RS18525	PF01739	CheR methyltransferase, SAM binding domain
CLFO_RS18525	PF03705	CheR methyltransferase, all-alpha domain
CLFO_RS18530	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS18530	PF00672	HAMP domain
CLFO_RS18530	PF12729	CLFO_RS18530
CLFO_RS18535	PF01584	CheW-like domain
CLFO_RS18540	PF01584	CheW-like domain
CLFO_RS18540	PF01627	Hpt domain
CLFO_RS18540	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18540	PF02895	Signal transducing histidine kinase, homodimeric domain
CLFO_RS18540	PF07194	P2 response regulator binding domain
CLFO_RS18545	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS18545	PF08359	YsiA-like protein, C-terminal region
CLFO_RS18550	PF00085	Thioredoxin
CLFO_RS18555	PF02583	Metal-sensitive transcriptional repressor
CLFO_RS18560	PF00122	E1-E2 ATPase
CLFO_RS18560	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS18565	PF00881	Nitroreductase family
CLFO_RS18570	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS18570	PF00672	HAMP domain
CLFO_RS18570	PF02743	Cache domain
CLFO_RS18575	PF03992	Antibiotic biosynthesis monooxygenase
CLFO_RS18580	PF02653	CLFO_RS18580
CLFO_RS18585	PF02653	CLFO_RS18585
CLFO_RS18590	PF00005	ABC transporter
CLFO_RS18595	PF02608	Basic membrane protein
CLFO_RS18600	PF00266	Aminotransferase class-V
CLFO_RS18605	PF00155	Aminotransferase class I and II
CLFO_RS18610	PF02548	Ketopantoate hydroxymethyltransferase
CLFO_RS18615	PF02548	Ketopantoate hydroxymethyltransferase
CLFO_RS18620	PF01614	Bacterial transcriptional regulator
CLFO_RS18620	PF09339	IclR helix-turn-helix domain
CLFO_RS18625	PF00920	Dehydratase family
CLFO_RS18630	PF06808	CLFO_RS18630
CLFO_RS18635	PF04290	CLFO_RS18635
CLFO_RS18640	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS18645	PF03773	CLFO_RS18645
CLFO_RS18655	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS18660	PF00990	GGDEF domain
CLFO_RS18660	PF13185	GAF domain
CLFO_RS18665	PF03551	Transcriptional regulator PadR-like family
CLFO_RS18670	PF00005	ABC transporter
CLFO_RS18675	PF03649	CLFO_RS18675
CLFO_RS18680	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS18680	PF06580	CLFO_RS18680
CLFO_RS18680	PF07694	5TMR of 5TMR-LYT
CLFO_RS18680	PF13492	GAF domain
CLFO_RS18685	PF00072	Response regulator receiver domain
CLFO_RS18685	PF04397	LytTr DNA-binding domain
CLFO_RS18690	PF02554	CLFO_RS18690
CLFO_RS18690	PF13722	CLFO_RS18690
CLFO_RS18695	PF00149	Calcineurin-like phosphoesterase
CLFO_RS18700	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS18700	PF12464	Maltose acetyltransferase
CLFO_RS18700	PF14602	Hexapeptide repeat of succinyl-transferase
CLFO_RS18705	PF13175	AAA ATPase domain
CLFO_RS18705	PF13476	AAA domain
CLFO_RS18710	PF03050	CLFO_RS18710
CLFO_RS18710	PF13005	CLFO_RS18710
CLFO_RS18715	PF05717	CLFO_RS18715
CLFO_RS18735	PF08443	RimK-like ATP-grasp domain
CLFO_RS18750	PF06527	CLFO_RS18750
CLFO_RS18750	PF15978	CLFO_RS18750
CLFO_RS18755	PF13401	AAA domain
CLFO_RS18760	PF00665	Integrase core domain
CLFO_RS18760	PF09299	Mu transposase, C-terminal
CLFO_RS18765	PF08721	TnsA endonuclease C terminal
CLFO_RS18765	PF08722	TnsA endonuclease N terminal
CLFO_RS18770	PF03050	CLFO_RS18770
CLFO_RS18770	PF13005	CLFO_RS18770
CLFO_RS18775	PF05717	CLFO_RS18775
CLFO_RS18785	PF00665	Integrase core domain
CLFO_RS18785	PF09299	Mu transposase, C-terminal
CLFO_RS18790	PF08721	TnsA endonuclease C terminal
CLFO_RS18790	PF08722	TnsA endonuclease N terminal
CLFO_RS18795	PF06527	CLFO_RS18795
CLFO_RS18795	PF15978	CLFO_RS18795
CLFO_RS18800	PF04851	Type III restriction enzyme, res subunit
CLFO_RS18805	PF01555	DNA methylase
CLFO_RS18825	PF01380	SIS domain
CLFO_RS18825	PF13522	Glutamine amidotransferase domain
CLFO_RS18830	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
CLFO_RS18830	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
CLFO_RS18830	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
CLFO_RS18830	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
CLFO_RS18835	PF02554	CLFO_RS18835
CLFO_RS18835	PF13722	CLFO_RS18835
CLFO_RS18845	PF01385	CLFO_RS18845
CLFO_RS18850	PF01797	Transposase IS200 like
CLFO_RS18855	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS18860	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS18865	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS18865	PF17147	CLFO_RS18865
CLFO_RS18870	PF12838	4Fe-4S dicluster domain
CLFO_RS18880	PF00871	Acetokinase family
CLFO_RS18885	PF01515	Phosphate acetyl/butaryl transferase
CLFO_RS18890	PF00871	Acetokinase family
CLFO_RS18895	PF00158	Sigma-54 interaction domain
CLFO_RS18895	PF00989	PAS fold
CLFO_RS18895	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS18900	PF07949	YbbR-like protein
CLFO_RS18905	PF02457	DisA bacterial checkpoint controller nucleotide-binding
CLFO_RS18910	PF04972	BON domain
CLFO_RS18915	PF00764	Arginosuccinate synthase
CLFO_RS18920	PF01488	Shikimate / quinate 5-dehydrogenase
CLFO_RS18925	PF00202	Aminotransferase class-III
CLFO_RS19290	PF07613	CLFO_RS19290
CLFO_RS19295	PF00885	6,7-dimethyl-8-ribityllumazine synthase
CLFO_RS19300	PF00925	GTP cyclohydrolase II
CLFO_RS19300	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
CLFO_RS19305	PF00677	Lumazine binding domain
CLFO_RS19310	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
CLFO_RS19310	PF01872	RibD C-terminal domain
CLFO_RS19315	PF02659	CLFO_RS19315
CLFO_RS19320	PF07784	CLFO_RS19320
CLFO_RS19325	PF11449	CLFO_RS19325
CLFO_RS19330	PF09323	CLFO_RS19330
CLFO_RS19335	PF03358	NADPH-dependent FMN reductase
CLFO_RS19340	PF00578	AhpC/TSA family
CLFO_RS19345	PF00122	E1-E2 ATPase
CLFO_RS19345	PF00702	haloacid dehalogenase-like hydrolase
CLFO_RS19350	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS19355	PF08141	CLFO_RS19355
CLFO_RS19360	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS19365	PF01476	LysM domain
CLFO_RS19365	PF01522	Polysaccharide deacetylase
CLFO_RS19370	PF14276	CLFO_RS19370
CLFO_RS19375	PF04239	Protein of unknown function (DUF421)
CLFO_RS19380	PF01022	Bacterial regulatory protein, arsR family
CLFO_RS19385	PF01546	Peptidase family M20/M25/M40
CLFO_RS19385	PF07687	Peptidase dimerisation domain
CLFO_RS19390	PF02016	LD-carboxypeptidase
CLFO_RS19395	PF07670	Nucleoside recognition
CLFO_RS19400	PF07670	Nucleoside recognition
CLFO_RS19405	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
CLFO_RS19405	PF13378	Enolase C-terminal domain-like
CLFO_RS19410	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CLFO_RS19410	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
CLFO_RS19415	PF00158	Sigma-54 interaction domain
CLFO_RS19415	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS19420	PF02673	CLFO_RS19420
CLFO_RS19425	PF00733	Asparagine synthase
CLFO_RS19425	PF13537	Glutamine amidotransferase domain
CLFO_RS19430	PF00571	CBS domain
CLFO_RS19435	PF01471	Putative peptidoglycan binding domain
CLFO_RS19435	PF03734	L,D-transpeptidase catalytic domain
CLFO_RS19450	PF01758	Sodium Bile acid symporter family
CLFO_RS19455	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS19455	PF00672	HAMP domain
CLFO_RS19455	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS19455	PF02743	Cache domain
CLFO_RS19460	PF13302	Acetyltransferase (GNAT) domain
CLFO_RS19465	PF12724	Flavodoxin domain
CLFO_RS19475	PF01471	Putative peptidoglycan binding domain
CLFO_RS19475	PF01476	LysM domain
CLFO_RS19480	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS19480	PF00672	HAMP domain
CLFO_RS19480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS19480	PF02743	Cache domain
CLFO_RS19485	PF00440	Bacterial regulatory proteins, tetR family
CLFO_RS19485	PF08359	YsiA-like protein, C-terminal region
CLFO_RS19490	PF02675	S-adenosylmethionine decarboxylase
CLFO_RS19495	PF03063	Prismane/CO dehydrogenase family
CLFO_RS19500	PF04748	Divergent polysaccharide deacetylase
CLFO_RS19505	PF04020	CLFO_RS19505
CLFO_RS19510	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS19520	PF07561	CLFO_RS19520
CLFO_RS19525	PF00380	Ribosomal protein S9/S16
CLFO_RS19530	PF00572	Ribosomal protein L13
CLFO_RS19535	PF01416	tRNA pseudouridine synthase
CLFO_RS19540	PF02361	Cobalt transport protein
CLFO_RS19545	PF00005	ABC transporter
CLFO_RS19550	PF00005	ABC transporter
CLFO_RS19555	PF01196	Ribosomal protein L17
CLFO_RS19560	PF01000	RNA polymerase Rpb3/RpoA insert domain
CLFO_RS19560	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
CLFO_RS19560	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
CLFO_RS19565	PF00163	Ribosomal protein S4/S9 N-terminal domain
CLFO_RS19565	PF01479	S4 domain
CLFO_RS19570	PF00411	Ribosomal protein S11
CLFO_RS19575	PF00416	Ribosomal protein S13/S18
CLFO_RS19580	PF00444	Ribosomal protein L36
CLFO_RS19585	PF01176	Translation initiation factor 1A / IF-1
CLFO_RS19595	PF00557	Metallopeptidase family M24
CLFO_RS19600	PF00406	Adenylate kinase
CLFO_RS19600	PF05191	Adenylate kinase, active site lid
CLFO_RS19605	PF00344	SecY translocase
CLFO_RS19610	PF00828	Ribosomal protein L18e/L15
CLFO_RS19615	PF00327	Ribosomal protein L30p/L7e
CLFO_RS19620	PF00333	Ribosomal protein S5, N-terminal domain
CLFO_RS19620	PF03719	Ribosomal protein S5, C-terminal domain
CLFO_RS19625	PF00861	Ribosomal L18p/L5e family
CLFO_RS19630	PF00347	Ribosomal protein L6
CLFO_RS19635	PF00410	Ribosomal protein S8
CLFO_RS19640	PF00253	Ribosomal protein S14p/S29e
CLFO_RS19645	PF00281	Ribosomal protein L5
CLFO_RS19645	PF00673	ribosomal L5P family C-terminus
CLFO_RS19650	PF00467	KOW motif
CLFO_RS19650	PF17136	CLFO_RS19650
CLFO_RS19655	PF00238	Ribosomal protein L14p/L23e
CLFO_RS19660	PF00366	Ribosomal protein S17
CLFO_RS19665	PF00831	Ribosomal L29 protein
CLFO_RS19670	PF00252	Ribosomal protein L16p/L10e
CLFO_RS19675	PF00189	Ribosomal protein S3, C-terminal domain
CLFO_RS19675	PF07650	KH domain
CLFO_RS19680	PF00237	Ribosomal protein L22p/L17e
CLFO_RS19685	PF00203	Ribosomal protein S19
CLFO_RS19690	PF00181	Ribosomal Proteins L2, RNA binding domain
CLFO_RS19690	PF03947	Ribosomal Proteins L2, C-terminal domain
CLFO_RS19695	PF00276	Ribosomal protein L23
CLFO_RS19700	PF00573	Ribosomal protein L4/L1 family
CLFO_RS19705	PF00297	Ribosomal protein L3
CLFO_RS19710	PF00338	Ribosomal protein S10p/S20e
CLFO_RS19715	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS19715	PF03143	Elongation factor Tu C-terminal domain
CLFO_RS19715	PF03144	Elongation factor Tu domain 2
CLFO_RS19720	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS19720	PF00679	Elongation factor G C-terminus
CLFO_RS19720	PF03144	Elongation factor Tu domain 2
CLFO_RS19720	PF03764	Elongation factor G, domain IV
CLFO_RS19720	PF14492	Elongation Factor G, domain II
CLFO_RS19725	PF00177	Ribosomal protein S7p/S5e
CLFO_RS19730	PF00164	Ribosomal protein S12/S23
CLFO_RS19735	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
CLFO_RS19740	PF00623	RNA polymerase Rpb1, domain 2
CLFO_RS19740	PF04983	RNA polymerase Rpb1, domain 3
CLFO_RS19740	PF04997	RNA polymerase Rpb1, domain 1
CLFO_RS19740	PF04998	RNA polymerase Rpb1, domain 5
CLFO_RS19740	PF05000	RNA polymerase Rpb1, domain 4
CLFO_RS19745	PF00562	RNA polymerase Rpb2, domain 6
CLFO_RS19745	PF04560	RNA polymerase Rpb2, domain 7
CLFO_RS19745	PF04561	RNA polymerase Rpb2, domain 2
CLFO_RS19745	PF04563	RNA polymerase beta subunit
CLFO_RS19745	PF04565	RNA polymerase Rpb2, domain 3
CLFO_RS19745	PF10385	RNA polymerase beta subunit external 1 domain
CLFO_RS19750	PF00542	Ribosomal protein L7/L12 C-terminal domain
CLFO_RS19750	PF16320	CLFO_RS19750
CLFO_RS19755	PF00466	Ribosomal protein L10
CLFO_RS19760	PF00687	Ribosomal protein L1p/L10e family
CLFO_RS19765	PF00298	Ribosomal protein L11, RNA binding domain
CLFO_RS19765	PF03946	Ribosomal protein L11, N-terminal domain
CLFO_RS19770	PF00467	KOW motif
CLFO_RS19770	PF02357	Transcription termination factor nusG
CLFO_RS19775	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
CLFO_RS19780	PF00471	Ribosomal protein L33
CLFO_RS19785	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS19785	PF03143	Elongation factor Tu C-terminal domain
CLFO_RS19785	PF03144	Elongation factor Tu domain 2
CLFO_RS19790	PF04542	Sigma-70 region 2
CLFO_RS19790	PF08281	Sigma-70, region 4
CLFO_RS19795	PF05991	CLFO_RS19795
CLFO_RS19800	PF00588	SpoU rRNA Methylase family
CLFO_RS19800	PF08032	RNA 2'-O ribose methyltransferase substrate binding
CLFO_RS19805	PF02511	Thymidylate synthase complementing protein
CLFO_RS19815	PF00636	Ribonuclease III domain
CLFO_RS19820	PF01406	tRNA synthetases class I (C) catalytic domain
CLFO_RS19820	PF09190	DALR domain
CLFO_RS19825	PF00132	Bacterial transferase hexapeptide (six repeats)
CLFO_RS19825	PF06426	Serine acetyltransferase, N-terminal
CLFO_RS19830	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CLFO_RS19835	PF06207	CLFO_RS19835
CLFO_RS19840	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
CLFO_RS19840	PF03129	Anticodon binding domain
CLFO_RS19840	PF09180	Prolyl-tRNA synthetase, C-terminal
CLFO_RS19845	PF02542	YgbB family
CLFO_RS19850	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
CLFO_RS19860	PF02559	CarD-like/TRCF domain
CLFO_RS19870	PF02457	DisA bacterial checkpoint controller nucleotide-binding
CLFO_RS19870	PF10635	DisA bacterial checkpoint controller linker region
CLFO_RS19870	PF14520	Helix-hairpin-helix domain
CLFO_RS19875	PF13481	AAA domain
CLFO_RS19880	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS19880	PF02151	UvrB/uvrC motif
CLFO_RS19880	PF02861	Clp amino terminal domain
CLFO_RS19880	PF07724	AAA domain (Cdc48 subfamily)
CLFO_RS19880	PF10431	C-terminal, D2-small domain, of ClpB protein
CLFO_RS19885	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain
CLFO_RS19890	PF02151	UvrB/uvrC motif
CLFO_RS19895	PF05848	Firmicute transcriptional repressor of class III stress genes (CtsR)
CLFO_RS19900	PF00009	Elongation factor Tu GTP binding domain
CLFO_RS19900	PF00679	Elongation factor G C-terminus
CLFO_RS19900	PF03144	Elongation factor Tu domain 2
CLFO_RS19900	PF03764	Elongation factor G, domain IV
CLFO_RS19900	PF14492	Elongation Factor G, domain II
CLFO_RS19905	PF00080	Copper/zinc superoxide dismutase (SODC)
CLFO_RS19910	PF02593	CLFO_RS19910
CLFO_RS19915	PF01243	Pyridoxamine 5'-phosphate oxidase
CLFO_RS19920	PF00155	Aminotransferase class I and II
CLFO_RS19920	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS19925	PF03063	Prismane/CO dehydrogenase family
CLFO_RS19930	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS19930	PF01434	Peptidase family M41
CLFO_RS19935	PF02867	Ribonucleotide reductase, barrel domain
CLFO_RS19935	PF03477	ATP cone domain
CLFO_RS19940	PF14595	Thioredoxin
CLFO_RS19960	PF00152	tRNA synthetases class II (D, K and N)
CLFO_RS19960	PF01336	OB-fold nucleic acid binding domain
CLFO_RS19965	PF01272	Transcription elongation factor, GreA/GreB, C-term
CLFO_RS19965	PF03449	Transcription elongation factor, N-terminal
CLFO_RS19975	PF01207	Dihydrouridine synthase (Dus)
CLFO_RS19980	PF03309	Type III pantothenate kinase
CLFO_RS19985	PF12822	Protein of unknown function (DUF3816)
CLFO_RS19990	PF02237	Biotin protein ligase C terminal domain
CLFO_RS19990	PF03099	Biotin/lipoate A/B protein ligase family
CLFO_RS19990	PF08279	HTH domain
CLFO_RS19995	PF03977	CLFO_RS19995
CLFO_RS20000	PF00364	Biotin-requiring enzyme
CLFO_RS20005	PF04277	CLFO_RS20005
CLFO_RS20010	PF01039	Carboxyl transferase domain
CLFO_RS20015	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS20015	PF01434	Peptidase family M41
CLFO_RS20015	PF06480	FtsH Extracellular
CLFO_RS20020	PF01171	PP-loop family
CLFO_RS20020	PF11734	TilS substrate C-terminal domain
CLFO_RS20025	PF00069	Protein kinase domain
CLFO_RS20030	PF00092	von Willebrand factor type A domain
CLFO_RS20030	PF13519	von Willebrand factor type A domain
CLFO_RS20035	PF04055	Radical SAM superfamily
CLFO_RS20035	PF12544	Lysine-2,3-aminomutase
CLFO_RS20040	PF01170	Putative RNA methylase family UPF0020
CLFO_RS20040	PF02926	THUMP domain
CLFO_RS20050	PF12844	Helix-turn-helix domain
CLFO_RS20055	PF01966	HD domain
CLFO_RS20060	PF05504	Spore germination B3/ GerAC like, C-terminal
CLFO_RS20065	PF03323	CLFO_RS20065
CLFO_RS20070	PF03845	CLFO_RS20070
CLFO_RS20075	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS20080	PF03576	Peptidase family S58
CLFO_RS20085	PF01966	HD domain
CLFO_RS20090	PF09148	Domain of unknown function (DUF1934)
CLFO_RS20095	PF01820	D-ala D-ala ligase N-terminus
CLFO_RS20095	PF07478	D-ala D-ala ligase C-terminus
CLFO_RS20100	PF09551	CLFO_RS20100
CLFO_RS20105	PF03845	CLFO_RS20105
CLFO_RS20110	PF03845	CLFO_RS20110
CLFO_RS20115	PF05504	Spore germination B3/ GerAC like, C-terminal
CLFO_RS20120	PF03323	CLFO_RS20120
CLFO_RS20130	PF12804	MobA-like NTP transferase domain
CLFO_RS20135	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS20135	PF07729	FCD domain
CLFO_RS20140	PF00288	GHMP kinases N terminal domain
CLFO_RS20140	PF08544	GHMP kinases C terminal
CLFO_RS20145	PF01476	LysM domain
CLFO_RS20145	PF12673	CLFO_RS20145
CLFO_RS20150	PF00395	S-layer homology domain
CLFO_RS20155	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
CLFO_RS20155	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
CLFO_RS20160	PF06257	Protein of unknown function (DUF1021)
CLFO_RS20165	PF01520	N-acetylmuramoyl-L-alanine amidase
CLFO_RS20165	PF08486	CLFO_RS20165
CLFO_RS20170	PF01047	MarR family
CLFO_RS20180	PF03553	CLFO_RS20180
CLFO_RS20185	PF04205	FMN-binding domain
CLFO_RS20190	PF01895	PhoU domain
CLFO_RS20195	PF00005	ABC transporter
CLFO_RS20200	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS20205	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS20210	PF12849	PBP superfamily domain
CLFO_RS20215	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS20215	PF00672	HAMP domain
CLFO_RS20215	PF02743	Cache domain
CLFO_RS20220	PF00571	CBS domain
CLFO_RS20220	PF01368	DHH family
CLFO_RS20220	PF02833	DHHA2 domain
CLFO_RS20220	PF07085	DRTGG domain
CLFO_RS20230	PF17179	CLFO_RS20230
CLFO_RS20235	PF00175	Oxidoreductase NAD-binding domain
CLFO_RS20235	PF00970	Oxidoreductase FAD-binding domain
CLFO_RS20235	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
CLFO_RS20240	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
CLFO_RS20240	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
CLFO_RS20240	PF12838	4Fe-4S dicluster domain
CLFO_RS20245	PF13483	Beta-lactamase superfamily domain
CLFO_RS20250	PF04055	Radical SAM superfamily
CLFO_RS20255	PF01594	CLFO_RS20255
CLFO_RS20260	PF04239	Protein of unknown function (DUF421)
CLFO_RS20265	PF03738	Glutathionylspermidine synthase preATP-grasp
CLFO_RS20270	PF04107	Glutamate-cysteine ligase family 2(GCS2)
CLFO_RS20275	PF04657	CLFO_RS20275
CLFO_RS20280	PF04657	CLFO_RS20280
CLFO_RS20290	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
CLFO_RS20290	PF00672	HAMP domain
CLFO_RS20290	PF02743	Cache domain
CLFO_RS20295	PF00288	GHMP kinases N terminal domain
CLFO_RS20300	PF00742	Homoserine dehydrogenase
CLFO_RS20300	PF01842	ACT domain
CLFO_RS20300	PF03447	Homoserine dehydrogenase, NAD binding domain
CLFO_RS20305	PF13291	ACT domain
CLFO_RS20310	PF00209	Sodium:neurotransmitter symporter family
CLFO_RS20315	PF00158	Sigma-54 interaction domain
CLFO_RS20315	PF01590	GAF domain
CLFO_RS20315	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS20315	PF13426	PAS domain
CLFO_RS20320	PF02597	ThiS family
CLFO_RS20325	PF04055	Radical SAM superfamily
CLFO_RS20325	PF13186	Iron-sulfur cluster-binding domain
CLFO_RS20335	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
CLFO_RS20335	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CLFO_RS20340	PF00384	Molybdopterin oxidoreductase
CLFO_RS20340	PF01568	Molydopterin dinucleotide binding domain
CLFO_RS20340	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
CLFO_RS20345	PF01565	FAD binding domain
CLFO_RS20345	PF02913	FAD linked oxidases, C-terminal domain
CLFO_RS20350	PF00766	Electron transfer flavoprotein FAD-binding domain
CLFO_RS20350	PF01012	Electron transfer flavoprotein domain
CLFO_RS20355	PF01012	Electron transfer flavoprotein domain
CLFO_RS20360	PF09861	Domain of unknown function (DUF2088)
CLFO_RS20365	PF04172	CLFO_RS20365
CLFO_RS20370	PF03788	CLFO_RS20370
CLFO_RS20375	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS20375	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS20375	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS20375	PF10371	Domain of unknown function
CLFO_RS20375	PF12838	4Fe-4S dicluster domain
CLFO_RS20375	PF17147	CLFO_RS20375
CLFO_RS20380	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS20380	PF07729	FCD domain
CLFO_RS20390	PF08761	dUTPase
CLFO_RS20395	PF00206	Lyase
CLFO_RS20395	PF14698	Argininosuccinate lyase C-terminal
CLFO_RS20400	PF01880	Desulfoferrodoxin
CLFO_RS20405	PF13091	PLD-like domain
CLFO_RS20405	PF13396	CLFO_RS20405
CLFO_RS20410	PF01734	Patatin-like phospholipase
CLFO_RS20415	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS20415	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS20415	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS20415	PF10371	Domain of unknown function
CLFO_RS20415	PF12838	4Fe-4S dicluster domain
CLFO_RS20415	PF17147	CLFO_RS20415
CLFO_RS20420	PF07883	Cupin domain
CLFO_RS20425	PF01370	NAD dependent epimerase/dehydratase family
CLFO_RS20430	PF13616	PPIC-type PPIASE domain
CLFO_RS20435	PF01053	Cys/Met metabolism PLP-dependent enzyme
CLFO_RS20440	PF04204	Homoserine O-succinyltransferase
CLFO_RS20450	PF00899	ThiF family
CLFO_RS20460	PF00749	tRNA synthetases class I (E and Q), catalytic domain
CLFO_RS20460	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
CLFO_RS20465	PF00355	Rieske [2Fe-2S] domain
CLFO_RS20465	PF01266	FAD dependent oxidoreductase
CLFO_RS20470	PF02581	Thiamine monophosphate synthase/TENI
CLFO_RS20475	PF01964	ThiC family
CLFO_RS20480	PF04055	Radical SAM superfamily
CLFO_RS20480	PF06968	Biotin and Thiamin Synthesis associated domain
CLFO_RS20485	PF05690	Thiazole biosynthesis protein ThiG
CLFO_RS20490	PF00899	ThiF family
CLFO_RS20490	PF14453	CLFO_RS20490
CLFO_RS20495	PF02597	ThiS family
CLFO_RS20500	PF13740	ACT domain
CLFO_RS20505	PF05167	Uncharacterised ACR (DUF711)
CLFO_RS20510	PF00004	ATPase family associated with various cellular activities (AAA)
CLFO_RS20510	PF07724	AAA domain (Cdc48 subfamily)
CLFO_RS20510	PF10431	C-terminal, D2-small domain, of ClpB protein
CLFO_RS20515	PF01063	Aminotransferase class IV
CLFO_RS20520	PF01266	FAD dependent oxidoreductase
CLFO_RS20525	PF13641	Glycosyltransferase like family 2
CLFO_RS20535	PF04295	CLFO_RS20535
CLFO_RS20540	PF08666	SAF domain
CLFO_RS20545	PF00158	Sigma-54 interaction domain
CLFO_RS20545	PF00989	PAS fold
CLFO_RS20545	PF02954	Bacterial regulatory protein, Fis family
CLFO_RS20545	PF06506	Propionate catabolism activator
CLFO_RS20550	PF00005	ABC transporter
CLFO_RS20550	PF12848	ABC transporter
CLFO_RS20555	PF00860	Permease family
CLFO_RS20560	PF01979	Amidohydrolase family
CLFO_RS20565	PF02347	Glycine cleavage system P-protein
CLFO_RS20570	PF02347	Glycine cleavage system P-protein
CLFO_RS20575	PF01966	HD domain
CLFO_RS20580	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
CLFO_RS20585	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
CLFO_RS20590	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
CLFO_RS20590	PF17147	CLFO_RS20590
CLFO_RS20595	PF12838	4Fe-4S dicluster domain
CLFO_RS20600	PF00871	Acetokinase family
CLFO_RS20605	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
CLFO_RS20605	PF03466	LysR substrate binding domain
CLFO_RS20615	PF00464	Serine hydroxymethyltransferase
CLFO_RS20620	PF02597	ThiS family
CLFO_RS20625	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
CLFO_RS20625	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CLFO_RS20630	PF03480	Bacterial extracellular solute-binding protein, family 7
CLFO_RS20635	PF01546	Peptidase family M20/M25/M40
CLFO_RS20635	PF07687	Peptidase dimerisation domain
CLFO_RS20640	PF06808	CLFO_RS20640
CLFO_RS20645	PF04290	CLFO_RS20645
CLFO_RS20650	PF00557	Metallopeptidase family M24
CLFO_RS20650	PF01321	Creatinase/Prolidase N-terminal domain
CLFO_RS20655	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS20655	PF07729	FCD domain
CLFO_RS20660	PF03819	MazG nucleotide pyrophosphohydrolase domain
CLFO_RS20665	PF01471	Putative peptidoglycan binding domain
CLFO_RS20665	PF07486	Cell Wall Hydrolase
CLFO_RS20670	PF00005	ABC transporter
CLFO_RS20675	PF00528	Binding-protein-dependent transport system inner membrane component
CLFO_RS20680	PF02621	Menaquinone biosynthesis
CLFO_RS20685	PF00920	Dehydratase family
CLFO_RS20690	PF07690	Major Facilitator Superfamily
CLFO_RS20695	PF00465	Iron-containing alcohol dehydrogenase
CLFO_RS20700	PF03372	Endonuclease/Exonuclease/phosphatase family
CLFO_RS20710	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
CLFO_RS20715	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CLFO_RS20715	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
CLFO_RS20720	PF00849	RNA pseudouridylate synthase
CLFO_RS20720	PF01479	S4 domain
CLFO_RS20725	PF00183	Hsp90 protein
CLFO_RS20725	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS20730	PF04205	FMN-binding domain
CLFO_RS20730	PF07833	Copper amine oxidase N-terminal domain
CLFO_RS20735	PF00403	Heavy-metal-associated domain
CLFO_RS20740	PF00892	EamA-like transporter family
CLFO_RS20745	PF08241	Methyltransferase domain
CLFO_RS20755	PF04542	Sigma-70 region 2
CLFO_RS20755	PF08281	Sigma-70, region 4
CLFO_RS20760	PF03812	CLFO_RS20760
CLFO_RS20765	PF09861	Domain of unknown function (DUF2088)
CLFO_RS20770	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
CLFO_RS20775	PF07005	Protein of unknown function, DUF1537
CLFO_RS20775	PF17042	CLFO_RS20775
CLFO_RS20780	PF00209	Sodium:neurotransmitter symporter family
CLFO_RS20785	PF01569	PAP2 superfamily
CLFO_RS20790	PF03404	Mo-co oxidoreductase dimerisation domain
CLFO_RS20795	PF09391	Protein of unknown function (DUF2000)
CLFO_RS20800	PF02311	AraC-like ligand binding domain
CLFO_RS20800	PF12833	Helix-turn-helix domain
CLFO_RS20805	PF01554	MatE
CLFO_RS20810	PF01385	CLFO_RS20810
CLFO_RS20810	PF07282	CLFO_RS20810
CLFO_RS20810	PF12323	CLFO_RS20810
CLFO_RS20815	PF13411	MerR HTH family regulatory protein
CLFO_RS20820	PF02447	CLFO_RS20820
CLFO_RS20825	PF00920	Dehydratase family
CLFO_RS20830	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS20830	PF07729	FCD domain
CLFO_RS20835	PF04542	Sigma-70 region 2
CLFO_RS20835	PF08281	Sigma-70, region 4
CLFO_RS20845	PF00158	Sigma-54 interaction domain
CLFO_RS20850	PF06253	Trimethylamine methyltransferase (MTTB)
CLFO_RS20855	PF07690	Major Facilitator Superfamily
CLFO_RS20860	PF00474	Sodium:solute symporter family
CLFO_RS20865	PF00805	Pentapeptide repeats (8 copies)
CLFO_RS20870	PF13786	Domain of unknown function (DUF4179)
CLFO_RS20875	PF04542	Sigma-70 region 2
CLFO_RS20875	PF08281	Sigma-70, region 4
CLFO_RS20885	PF00892	EamA-like transporter family
CLFO_RS20890	PF00155	Aminotransferase class I and II
CLFO_RS20890	PF00392	Bacterial regulatory proteins, gntR family
CLFO_RS20895	PF08241	Methyltransferase domain
CLFO_RS20900	PF01695	IstB-like ATP binding protein
CLFO_RS20905	PF00665	Integrase core domain
CLFO_RS20910	PF03050	CLFO_RS20910
CLFO_RS20910	PF13005	CLFO_RS20910
CLFO_RS20915	PF05717	CLFO_RS20915
CLFO_RS20930	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS20935	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
CLFO_RS20940	PF02590	Predicted SPOUT methyltransferase
CLFO_RS20945	PF07282	CLFO_RS20945
CLFO_RS20955	PF01569	PAP2 superfamily
CLFO_RS20960	PF14116	CLFO_RS20960
CLFO_RS20965	PF13180	PDZ domain
CLFO_RS20965	PF13365	Trypsin-like peptidase domain
CLFO_RS20970	PF00753	Metallo-beta-lactamase superfamily
CLFO_RS20975	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
CLFO_RS20980	PF09648	YycH protein
CLFO_RS20985	PF07435	YycH protein
CLFO_RS20995	PF00512	His Kinase A (phospho-acceptor) domain
CLFO_RS20995	PF00672	HAMP domain
CLFO_RS20995	PF00989	PAS fold
CLFO_RS20995	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
CLFO_RS21000	PF00072	Response regulator receiver domain
CLFO_RS21000	PF00486	Transcriptional regulatory protein, C terminal
CLFO_RS21005	PF13485	Peptidase MA superfamily
CLFO_RS21010	PF00082	Subtilase family
CLFO_RS21015	PF01476	LysM domain
CLFO_RS21015	PF01551	Peptidase family M23
CLFO_RS21015	PF07501	G5 domain
CLFO_RS21020	PF01433	Peptidase family M1
CLFO_RS21025	PF07261	Replication initiation and membrane attachment
CLFO_RS21030	PF01695	IstB-like ATP binding protein
CLFO_RS21035	PF00005	ABC transporter
CLFO_RS21040	PF00005	ABC transporter
CLFO_RS21045	PF04055	Radical SAM superfamily
CLFO_RS21045	PF13186	Iron-sulfur cluster-binding domain
CLFO_RS21045	PF13353	4Fe-4S single cluster domain
CLFO_RS21050	PF05402	Coenzyme PQQ synthesis protein D (PqqD)
CLFO_RS21055	PF00072	Response regulator receiver domain
CLFO_RS21055	PF04397	LytTr DNA-binding domain
CLFO_RS21060	PF04647	CLFO_RS21060
CLFO_RS21065	PF14501	GHKL domain
CLFO_RS21065	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
CLFO_RS21085	PF00709	Adenylosuccinate synthetase
CLFO_RS21090	PF08984	Domain of unknown function (DUF1858)
CLFO_RS21095	PF13302	Acetyltransferase (GNAT) domain
CLFO_RS21100	PF00772	DnaB-like helicase N terminal domain
CLFO_RS21100	PF03796	DnaB-like helicase C terminal domain
CLFO_RS21105	PF01281	Ribosomal protein L9, N-terminal domain
CLFO_RS21105	PF03948	Ribosomal protein L9, C-terminal domain
CLFO_RS21110	PF01368	DHH family
CLFO_RS21110	PF02272	DHHA1 domain
CLFO_RS21115	PF09991	CLFO_RS21115
CLFO_RS21120	PF12643	CLFO_RS21120
CLFO_RS21125	PF06081	CLFO_RS21125
CLFO_RS21130	PF07441	CLFO_RS21130
CLFO_RS21135	PF10704	CLFO_RS21135
CLFO_RS21140	PF09388	Spo0E like sporulation regulatory protein
CLFO_RS21145	PF00563	EAL domain
CLFO_RS21145	PF00990	GGDEF domain
CLFO_RS21145	PF13426	PAS domain
CLFO_RS21150	PF00589	Phage integrase family
CLFO_RS21165	PF13175	AAA ATPase domain
CLFO_RS21170	PF06527	CLFO_RS21170
CLFO_RS21170	PF15978	CLFO_RS21170
CLFO_RS21175	PF13401	AAA domain
CLFO_RS21180	PF00665	Integrase core domain
CLFO_RS21180	PF09299	Mu transposase, C-terminal
CLFO_RS21185	PF08721	TnsA endonuclease C terminal
CLFO_RS21185	PF08722	TnsA endonuclease N terminal
CLFO_RS21205	PF07285	CLFO_RS21205
CLFO_RS21235	PF00589	Phage integrase family
CLFO_RS21235	PF13495	Phage integrase, N-terminal SAM-like domain
CLFO_RS21240	PF08275	DNA primase catalytic core, N-terminal domain
CLFO_RS21250	PF05362	Lon protease (S16) C-terminal proteolytic domain
CLFO_RS21250	PF13337	CLFO_RS21250
CLFO_RS21255	PF08665	CLFO_RS21255
CLFO_RS21270	PF08747	Domain of unknown function (DUF1788)
CLFO_RS21275	PF08849	Putative inner membrane protein (DUF1819)
CLFO_RS21305	PF01381	Helix-turn-helix
CLFO_RS21320	PF06406	StbA protein
CLFO_RS21330	PF05635	23S rRNA-intervening sequence protein
CLFO_RS21335	PF02132	RecR protein
CLFO_RS21335	PF13662	Toprim domain
CLFO_RS21340	PF02575	YbaB/EbfC DNA-binding family
CLFO_RS21345	PF12169	DNA polymerase III subunits gamma and tau domain III
CLFO_RS21345	PF13177	DNA polymerase III, delta subunit
CLFO_RS21350	PF02674	CLFO_RS21350
CLFO_RS21365	PF06866	CLFO_RS21365
CLFO_RS21370	PF03698	CLFO_RS21370
CLFO_RS21375	PF14584	CLFO_RS21375
CLFO_RS21380	PF00266	Aminotransferase class-V
CLFO_RS21385	PF02195	ParB-like nuclease domain
CLFO_RS21390	PF13614	AAA domain
CLFO_RS21395	PF01169	CLFO_RS21395
CLFO_RS21400	PF02195	ParB-like nuclease domain
CLFO_RS21405	PF02527	rRNA small subunit methyltransferase G
CLFO_RS21410	PF01134	Glucose inhibited division protein A
CLFO_RS21410	PF13932	GidA associated domain 3
CLFO_RS21415	PF01926	50S ribosome-binding GTPase
CLFO_RS21415	PF10396	GTP-binding protein TrmE N-terminus
CLFO_RS21415	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
CLFO_RS21420	PF01424	R3H domain
CLFO_RS21420	PF13083	KH domain
CLFO_RS21420	PF14804	Jag N-terminus
CLFO_RS21425	PF02096	60Kd inner membrane protein
CLFO_RS21430	PF01809	CLFO_RS21430
CLFO_RS21435	PF00825	Ribonuclease P
CLFO_RS21440	PF00468	Ribosomal protein L34