CLFO_RS00005 SM00382 ATPases associated with a variety of cellular activities CLFO_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CLFO_RS00010 SM00480 DNA polymerase III beta subunit CLFO_RS00030 SM00387 Histidine kinase-like ATPases CLFO_RS00030 SM00433 TopoisomeraseII CLFO_RS00035 SM00434 DNA Topoisomerase IV CLFO_RS00285 SM01004 Delta-aminolevulinic acid dehydratase CLFO_RS00410 SM00966 SpoVT / AbrB like domain CLFO_RS00415 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS00450 SM01208 CLFO_RS00450 CLFO_RS00455 SM00493 CLFO_RS00455 CLFO_RS00460 SM00650 Ribosomal RNA adenine dimethylases CLFO_RS00475 SM00450 Rhodanese Homology Domain CLFO_RS00545 SM01400 CLFO_RS00545 CLFO_RS00560 SM00487 DEAD-like helicases superfamily CLFO_RS00560 SM00490 helicase superfamily c-terminal domain CLFO_RS00560 SM00982 CLFO_RS00560 CLFO_RS00560 SM01058 CarD-like/TRCF domain CLFO_RS00570 SM00966 SpoVT / AbrB like domain CLFO_RS00585 SM00411 bacterial (prokaryotic) histone like domain CLFO_RS00590 SM00363 S4 RNA-binding domain CLFO_RS00615 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS00625 SM00331 Sigma factor PP2C-like phosphatases CLFO_RS00635 SM00060 Fibronectin type 3 domain CLFO_RS00635 SM00429 ig-like, plexins, transcription factors CLFO_RS00710 SM00382 ATPases associated with a variety of cellular activities CLFO_RS00735 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLFO_RS00895 SM00357 Cold shock protein domain CLFO_RS00895 SM00382 ATPases associated with a variety of cellular activities CLFO_RS00895 SM00959 Rho termination factor, N-terminal domain CLFO_RS00925 SM00937 CLFO_RS00925 CLFO_RS00935 SM00240 Forkhead associated domain CLFO_RS00955 SM00226 Low molecular weight phosphatase family CLFO_RS01030 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01140 SM00984 UDP binding domain CLFO_RS01180 SM00984 UDP binding domain CLFO_RS01205 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS01240 SM00518 AP endonuclease family 2 CLFO_RS01255 SM00346 helix_turn_helix isocitrate lyase regulation CLFO_RS01275 SM00060 Fibronectin type 3 domain CLFO_RS01290 SM00448 cheY-homologous receiver domain CLFO_RS01290 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS01295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS01295 SM00387 Histidine kinase-like ATPases CLFO_RS01295 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS01300 SM00909 Sporulation and spore germination CLFO_RS01330 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLFO_RS01330 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01415 SM00822 CLFO_RS01415 CLFO_RS01445 SM00858 CLFO_RS01445 CLFO_RS01495 SM00858 CLFO_RS01495 CLFO_RS01595 SM00387 Histidine kinase-like ATPases CLFO_RS01600 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS01600 SM00448 cheY-homologous receiver domain CLFO_RS01625 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01630 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01680 SM00957 SecA DEAD-like domain CLFO_RS01680 SM00958 SecA preprotein cross-linking domain CLFO_RS01685 SM00937 CLFO_RS01685 CLFO_RS01720 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS01720 SM00732 Likely ribonuclease with RNase H fold. CLFO_RS01725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLFO_RS01725 SM00387 Histidine kinase-like ATPases CLFO_RS01730 SM00448 cheY-homologous receiver domain CLFO_RS01730 SM01012 CLFO_RS01730 CLFO_RS01740 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01750 SM00829 Enoylreductase CLFO_RS01760 SM01007 Class II Aldolase and Adducin N-terminal domain CLFO_RS01795 SM00387 Histidine kinase-like ATPases CLFO_RS01800 SM00448 cheY-homologous receiver domain CLFO_RS01800 SM00850 LytTr DNA-binding domain CLFO_RS01855 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01865 SM00382 ATPases associated with a variety of cellular activities CLFO_RS01870 SM00881 CoA binding domain CLFO_RS01875 SM00347 helix_turn_helix multiple antibiotic resistance protein CLFO_RS01890 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLFO_RS01900 SM01007 Class II Aldolase and Adducin N-terminal domain CLFO_RS01920 SM00478 endonuclease III CLFO_RS01930 SM00883 Chaperonin 10 Kd subunit CLFO_RS01960 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS01960 SM01240 CLFO_RS01960 CLFO_RS02000 SM00365 Leucine-rich repeat, SDS22-like subfamily CLFO_RS02000 SM00369 Leucine-rich repeats, typical (most populated) subfamily CLFO_RS02015 SM01001 AIR carboxylase CLFO_RS02040 SM00798 AICARFT/IMPCHase bienzyme CLFO_RS02040 SM00851 MGS-like domain CLFO_RS02045 SM01209 CLFO_RS02045 CLFO_RS02045 SM01210 CLFO_RS02045 CLFO_RS02050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS02070 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02085 SM00893 Electron transfer flavoprotein domain CLFO_RS02090 SM00893 Electron transfer flavoprotein domain CLFO_RS02115 SM00481 DNA polymerase alpha chain like domain CLFO_RS02125 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS02130 SM00902 Iron hydrogenase small subunit CLFO_RS02130 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLFO_RS02135 SM00448 cheY-homologous receiver domain CLFO_RS02135 SM01012 CLFO_RS02135 CLFO_RS02140 SM00387 Histidine kinase-like ATPases CLFO_RS02160 SM00877 CLFO_RS02160 CLFO_RS02165 SM00877 CLFO_RS02165 CLFO_RS02175 SM00877 CLFO_RS02175 CLFO_RS02205 SM00877 CLFO_RS02205 CLFO_RS02215 SM00849 Metallo-beta-lactamase superfamily CLFO_RS02305 SM00830 Chorismate mutase type II CLFO_RS02310 SM00091 PAS domain CLFO_RS02310 SM00387 Histidine kinase-like ATPases CLFO_RS02310 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS02315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS02315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS02325 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLFO_RS02325 SM00292 breast cancer carboxy-terminal domain CLFO_RS02325 SM00532 Ligase N family CLFO_RS02340 SM00899 CLFO_RS02340 CLFO_RS02370 SM00646 CLFO_RS02370 CLFO_RS02380 SM00909 Sporulation and spore germination CLFO_RS02440 SM01117 CLFO_RS02440 CLFO_RS02520 SM00062 Bacterial periplasmic substrate-binding proteins CLFO_RS02530 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02540 SM00829 Enoylreductase CLFO_RS02550 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS02555 SM00091 PAS domain CLFO_RS02555 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02570 SM00861 Transketolase, pyrimidine binding domain CLFO_RS02590 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLFO_RS02590 SM00091 PAS domain CLFO_RS02595 SM00091 PAS domain CLFO_RS02595 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02630 SM00564 beta-propeller repeat CLFO_RS02680 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02695 SM00327 von Willebrand factor (vWF) type A domain CLFO_RS02725 SM01068 Putative carbohydrate binding domain CLFO_RS02740 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02745 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS02750 SM00636 CLFO_RS02750 CLFO_RS02760 SM00052 Putative diguanylate phosphodiesterase CLFO_RS02760 SM00267 diguanylate cyclase CLFO_RS02780 SM00646 CLFO_RS02780 CLFO_RS02810 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS02840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS02845 SM01329 CLFO_RS02845 CLFO_RS02860 SM00260 Two component signalling adaptor domain CLFO_RS02885 SM01001 AIR carboxylase CLFO_RS02905 SM00382 ATPases associated with a variety of cellular activities CLFO_RS02905 SM00930 CLFO_RS02905 CLFO_RS02995 SM00878 Biotin carboxylase C-terminal domain CLFO_RS03005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS03005 SM00387 Histidine kinase-like ATPases CLFO_RS03005 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS03010 SM00354 helix_turn _helix lactose operon repressor CLFO_RS03025 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03025 SM00994 ClpX C4-type zinc finger CLFO_RS03025 SM01086 C-terminal, D2-small domain, of ClpB protein CLFO_RS03040 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03045 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03045 SM00464 Found in ATP-dependent protease La (LON) CLFO_RS03090 SM00028 Tetratricopeptide repeats CLFO_RS03095 SM00448 cheY-homologous receiver domain CLFO_RS03095 SM00850 LytTr DNA-binding domain CLFO_RS03110 SM00793 Accessory gene regulator B CLFO_RS03120 SM00387 Histidine kinase-like ATPases CLFO_RS03120 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS03130 SM00155 Phospholipase D. Active site motifs. CLFO_RS03155 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS03170 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS03190 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03220 SM00100 Cyclic nucleotide-monophosphate binding domain CLFO_RS03220 SM00419 helix_turn_helix, cAMP Regulatory protein CLFO_RS03235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS03280 SM00091 PAS domain CLFO_RS03280 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS03355 SM00448 cheY-homologous receiver domain CLFO_RS03355 SM00850 LytTr DNA-binding domain CLFO_RS03375 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03405 SM00612 CLFO_RS03405 CLFO_RS03455 SM00857 Resolvase, N terminal domain CLFO_RS03485 SM01321 CLFO_RS03485 CLFO_RS03565 SM00852 Probable molybdopterin binding domain CLFO_RS03640 SM00060 Fibronectin type 3 domain CLFO_RS03645 SM00900 CLFO_RS03645 CLFO_RS03660 SM01018 B12 binding domain CLFO_RS03665 SM00091 PAS domain CLFO_RS03665 SM00387 Histidine kinase-like ATPases CLFO_RS03665 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS03675 SM00938 Nitrogen regulatory protein P-II CLFO_RS03680 SM00849 Metallo-beta-lactamase superfamily CLFO_RS03680 SM01027 Beta-Casp domain CLFO_RS03690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS03695 SM00331 Sigma factor PP2C-like phosphatases CLFO_RS03695 SM00448 cheY-homologous receiver domain CLFO_RS03705 SM00346 helix_turn_helix isocitrate lyase regulation CLFO_RS03735 SM00858 CLFO_RS03735 CLFO_RS03745 SM00387 Histidine kinase-like ATPases CLFO_RS03750 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS03750 SM00448 cheY-homologous receiver domain CLFO_RS03770 SM00354 helix_turn _helix lactose operon repressor CLFO_RS03775 SM00382 ATPases associated with a variety of cellular activities CLFO_RS03800 SM00710 Parallel beta-helix repeats CLFO_RS03815 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS03815 SM00895 CLFO_RS03815 CLFO_RS03820 SM00829 Enoylreductase CLFO_RS03860 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS03860 SM00895 CLFO_RS03860 CLFO_RS03890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CLFO_RS03905 SM01230 CLFO_RS03905 CLFO_RS03920 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLFO_RS03940 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CLFO_RS03945 SM00851 MGS-like domain CLFO_RS03945 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLFO_RS03955 SM00871 Bacterial transcription activator, effector binding domain CLFO_RS03965 SM00098 Alkaline phosphatase homologues CLFO_RS03980 SM00857 Resolvase, N terminal domain CLFO_RS04000 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS04015 SM00448 cheY-homologous receiver domain CLFO_RS04015 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS04020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS04020 SM00387 Histidine kinase-like ATPases CLFO_RS04020 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS04055 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04075 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04100 SM00244 prohibitin homologues CLFO_RS04115 SM00448 cheY-homologous receiver domain CLFO_RS04115 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS04120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS04120 SM00387 Histidine kinase-like ATPases CLFO_RS04120 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS04130 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS04130 SM01091 Transporter associated domain CLFO_RS04140 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04230 SM00838 Elongation factor G C-terminus CLFO_RS04240 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS04245 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLFO_RS04360 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS04360 SM00924 MgtE intracellular N domain CLFO_RS04405 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLFO_RS04405 SM00387 Histidine kinase-like ATPases CLFO_RS04410 SM00448 cheY-homologous receiver domain CLFO_RS04410 SM00850 LytTr DNA-binding domain CLFO_RS04430 SM00900 CLFO_RS04430 CLFO_RS04445 SM00100 Cyclic nucleotide-monophosphate binding domain CLFO_RS04445 SM00419 helix_turn_helix, cAMP Regulatory protein CLFO_RS04455 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04460 SM00899 CLFO_RS04460 CLFO_RS04480 SM00450 Rhodanese Homology Domain CLFO_RS04590 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04595 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLFO_RS04640 SM01230 CLFO_RS04640 CLFO_RS04650 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04670 SM00387 Histidine kinase-like ATPases CLFO_RS04675 SM00421 helix_turn_helix, Lux Regulon CLFO_RS04675 SM00448 cheY-homologous receiver domain CLFO_RS04685 SM00900 CLFO_RS04685 CLFO_RS04695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS04745 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CLFO_RS04750 SM00849 Metallo-beta-lactamase superfamily CLFO_RS04755 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CLFO_RS04765 SM00822 CLFO_RS04765 CLFO_RS04765 SM00823 Phosphopantetheine attachment site CLFO_RS04765 SM00825 Beta-ketoacyl synthase CLFO_RS04765 SM00826 CLFO_RS04765 CLFO_RS04770 SM00823 Phosphopantetheine attachment site CLFO_RS04775 SM00823 Phosphopantetheine attachment site CLFO_RS04780 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04790 SM00822 CLFO_RS04790 CLFO_RS04790 SM00823 Phosphopantetheine attachment site CLFO_RS04790 SM00825 Beta-ketoacyl synthase CLFO_RS04790 SM01294 CLFO_RS04790 CLFO_RS04795 SM00822 CLFO_RS04795 CLFO_RS04795 SM00823 Phosphopantetheine attachment site CLFO_RS04795 SM00825 Beta-ketoacyl synthase CLFO_RS04795 SM00826 CLFO_RS04795 CLFO_RS04795 SM01294 CLFO_RS04795 CLFO_RS04800 SM00822 CLFO_RS04800 CLFO_RS04805 SM00825 Beta-ketoacyl synthase CLFO_RS04815 SM00822 CLFO_RS04815 CLFO_RS04820 SM00825 Beta-ketoacyl synthase CLFO_RS04830 SM00822 CLFO_RS04830 CLFO_RS04830 SM00823 Phosphopantetheine attachment site CLFO_RS04830 SM00825 Beta-ketoacyl synthase CLFO_RS04830 SM00826 CLFO_RS04830 CLFO_RS04835 SM00822 CLFO_RS04835 CLFO_RS04835 SM00823 Phosphopantetheine attachment site CLFO_RS04835 SM00825 Beta-ketoacyl synthase CLFO_RS04835 SM00826 CLFO_RS04835 CLFO_RS04840 SM00822 CLFO_RS04840 CLFO_RS04840 SM00823 Phosphopantetheine attachment site CLFO_RS04840 SM00825 Beta-ketoacyl synthase CLFO_RS04840 SM00826 CLFO_RS04840 CLFO_RS04850 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CLFO_RS04890 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04895 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04915 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04940 SM00382 ATPases associated with a variety of cellular activities CLFO_RS04950 SM00529 Helix-turn-helix diphteria tox regulatory element CLFO_RS04955 SM00899 CLFO_RS04955 CLFO_RS04965 SM00420 helix_turn_helix, Deoxyribose operon repressor CLFO_RS04965 SM01134 CLFO_RS04965 CLFO_RS05005 SM00563 Phosphate acyltransferases CLFO_RS05015 SM00257 Lysin motif CLFO_RS05020 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLFO_RS05025 SM01130 CLFO_RS05025 CLFO_RS05060 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS05080 SM00897 FIST N domain CLFO_RS05080 SM01204 CLFO_RS05080 CLFO_RS05085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS05090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS05120 SM00905 Dihydroneopterin aldolase CLFO_RS05185 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS05195 SM00382 ATPases associated with a variety of cellular activities CLFO_RS05245 SM00478 endonuclease III CLFO_RS05250 SM00842 Cell division protein FtsA CLFO_RS05255 SM01208 CLFO_RS05255 CLFO_RS05295 SM00855 Phosphoglycerate mutase family CLFO_RS05320 SM01321 CLFO_RS05320 CLFO_RS05350 SM00646 CLFO_RS05350 CLFO_RS05390 SM00357 Cold shock protein domain CLFO_RS05430 SM00917 LeuA allosteric (dimerisation) domain CLFO_RS05435 SM00917 LeuA allosteric (dimerisation) domain CLFO_RS05450 SM01329 CLFO_RS05450 CLFO_RS05485 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS05490 SM00382 ATPases associated with a variety of cellular activities CLFO_RS05520 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLFO_RS05530 SM00873 B3/4 domain CLFO_RS05530 SM00874 tRNA synthetase B5 domain CLFO_RS05530 SM00896 Ferredoxin-fold anticodon binding domain CLFO_RS05550 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS05565 SM00890 Domain of unknown function CLFO_RS05580 SM01264 CLFO_RS05580 CLFO_RS05660 SM00091 PAS domain CLFO_RS05700 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS05745 SM00487 DEAD-like helicases superfamily CLFO_RS05745 SM00490 helicase superfamily c-terminal domain CLFO_RS05765 SM00463 Small MutS-related domain CLFO_RS05765 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLFO_RS05765 SM00534 ATPase domain of DNA mismatch repair MUTS family CLFO_RS05775 SM00387 Histidine kinase-like ATPases CLFO_RS05775 SM00448 cheY-homologous receiver domain CLFO_RS05780 SM00387 Histidine kinase-like ATPases CLFO_RS05780 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS05780 SM00448 cheY-homologous receiver domain CLFO_RS05785 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS05785 SM00448 cheY-homologous receiver domain CLFO_RS05810 SM00382 ATPases associated with a variety of cellular activities CLFO_RS05830 SM00836 DALR anticodon binding domain CLFO_RS05830 SM01016 Arginyl tRNA synthetase N terminal dom CLFO_RS05850 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS05860 SM00028 Tetratricopeptide repeats CLFO_RS05865 SM00852 Probable molybdopterin binding domain CLFO_RS05870 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLFO_RS05895 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS05910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS05915 SM00855 Phosphoglycerate mutase family CLFO_RS05920 SM00091 PAS domain CLFO_RS05920 SM00382 ATPases associated with a variety of cellular activities CLFO_RS06030 SM00226 Low molecular weight phosphatase family CLFO_RS06075 SM00448 cheY-homologous receiver domain CLFO_RS06075 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS06080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS06080 SM00387 Histidine kinase-like ATPases CLFO_RS06080 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS06300 SM00852 Probable molybdopterin binding domain CLFO_RS06305 SM01092 CO dehydrogenase flavoprotein C-terminal domain CLFO_RS06315 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLFO_RS06340 SM00849 Metallo-beta-lactamase superfamily CLFO_RS06360 SM00347 helix_turn_helix multiple antibiotic resistance protein CLFO_RS06370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS06370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS06415 SM00796 Allophanate hydrolase subunit 1 CLFO_RS06420 SM00797 Allophanate hydrolase subunit 2 CLFO_RS06425 SM00387 Histidine kinase-like ATPases CLFO_RS06425 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS06430 SM00448 cheY-homologous receiver domain CLFO_RS06430 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS06455 SM00919 Malic enzyme, NAD binding domain CLFO_RS06455 SM01274 CLFO_RS06455 CLFO_RS06460 SM00091 PAS domain CLFO_RS06460 SM00382 ATPases associated with a variety of cellular activities CLFO_RS06495 SM00232 JAB/MPN domain CLFO_RS06555 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS06565 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS06580 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS06580 SM00876 Biotin and Thiamin Synthesis associated domain CLFO_RS06620 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS06620 SM00866 CLFO_RS06620 CLFO_RS06640 SM00876 Biotin and Thiamin Synthesis associated domain CLFO_RS06670 SM00244 prohibitin homologues CLFO_RS06685 SM01325 CLFO_RS06685 CLFO_RS06690 SM00854 Bacterial capsule synthesis protein PGA_cap CLFO_RS06705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS06705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS06710 SM00851 MGS-like domain CLFO_RS06710 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLFO_RS06730 SM00354 helix_turn _helix lactose operon repressor CLFO_RS06745 SM00382 ATPases associated with a variety of cellular activities CLFO_RS06800 SM01211 CLFO_RS06800 CLFO_RS06805 SM00420 helix_turn_helix, Deoxyribose operon repressor CLFO_RS06805 SM01134 CLFO_RS06805 CLFO_RS06835 SM00448 cheY-homologous receiver domain CLFO_RS06835 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS06840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS06840 SM00387 Histidine kinase-like ATPases CLFO_RS06840 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS06860 SM00052 Putative diguanylate phosphodiesterase CLFO_RS06860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLFO_RS06860 SM00267 diguanylate cyclase CLFO_RS06875 SM00448 cheY-homologous receiver domain CLFO_RS06875 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS06880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS06880 SM00387 Histidine kinase-like ATPases CLFO_RS06880 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS06895 SM00382 ATPases associated with a variety of cellular activities CLFO_RS06915 SM00052 Putative diguanylate phosphodiesterase CLFO_RS06915 SM00062 Bacterial periplasmic substrate-binding proteins CLFO_RS06915 SM00267 diguanylate cyclase CLFO_RS06920 SM00341 Helicase and RNase D C-terminal CLFO_RS06920 SM00487 DEAD-like helicases superfamily CLFO_RS06920 SM00490 helicase superfamily c-terminal domain CLFO_RS06920 SM00956 CLFO_RS06920 CLFO_RS06970 SM00382 ATPases associated with a variety of cellular activities CLFO_RS06980 SM00938 Nitrogen regulatory protein P-II CLFO_RS06985 SM00938 Nitrogen regulatory protein P-II CLFO_RS07010 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS07020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS07020 SM01049 CLFO_RS07020 CLFO_RS07035 SM00357 Cold shock protein domain CLFO_RS07100 SM00900 CLFO_RS07100 CLFO_RS07115 SM00382 ATPases associated with a variety of cellular activities CLFO_RS07130 SM00852 Probable molybdopterin binding domain CLFO_RS07135 SM00852 Probable molybdopterin binding domain CLFO_RS07145 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLFO_RS07145 SM00481 DNA polymerase alpha chain like domain CLFO_RS07145 SM00483 DNA polymerase X family CLFO_RS07155 SM00267 diguanylate cyclase CLFO_RS07170 SM00481 DNA polymerase alpha chain like domain CLFO_RS07180 SM00382 ATPases associated with a variety of cellular activities CLFO_RS07185 SM00382 ATPases associated with a variety of cellular activities CLFO_RS07195 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS07200 SM00046 Diacylglycerol kinase catalytic domain (presumed) CLFO_RS07205 SM00028 Tetratricopeptide repeats CLFO_RS07205 SM00220 Serine/Threonine protein kinases, catalytic domain CLFO_RS07205 SM00267 diguanylate cyclase CLFO_RS07240 SM00387 Histidine kinase-like ATPases CLFO_RS07245 SM00421 helix_turn_helix, Lux Regulon CLFO_RS07245 SM00448 cheY-homologous receiver domain CLFO_RS07270 SM00857 Resolvase, N terminal domain CLFO_RS07280 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS07285 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS07290 SM01040 BRO family, N-terminal domain CLFO_RS07300 SM00966 SpoVT / AbrB like domain CLFO_RS07365 SM00507 HNH nucleases CLFO_RS07490 SM00646 CLFO_RS07490 CLFO_RS07520 SM00507 HNH nucleases CLFO_RS07560 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CLFO_RS07560 SM00474 3'-5' exonuclease CLFO_RS07560 SM00475 5'-3' exonuclease CLFO_RS07560 SM00482 DNA polymerase A domain CLFO_RS07590 SM00382 ATPases associated with a variety of cellular activities CLFO_RS07640 SM00910 CLFO_RS07640 CLFO_RS07780 SM00491 CLFO_RS07780 CLFO_RS07810 SM00938 Nitrogen regulatory protein P-II CLFO_RS07820 SM00563 Phosphate acyltransferases CLFO_RS07900 SM00870 CLFO_RS07900 CLFO_RS07915 SM00981 CLFO_RS07915 CLFO_RS07925 SM00852 Probable molybdopterin binding domain CLFO_RS07945 SM00387 Histidine kinase-like ATPases CLFO_RS07995 SM00857 Resolvase, N terminal domain CLFO_RS08060 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS08065 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS08225 SM00857 Resolvase, N terminal domain CLFO_RS08250 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS08270 SM00881 CoA binding domain CLFO_RS08305 SM00636 CLFO_RS08305 CLFO_RS08370 SM00287 Bacterial SH3 domain homologues CLFO_RS08400 SM00481 DNA polymerase alpha chain like domain CLFO_RS08405 SM00387 Histidine kinase-like ATPases CLFO_RS08420 SM00900 CLFO_RS08420 CLFO_RS08495 SM00851 MGS-like domain CLFO_RS08510 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS08520 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS08550 SM01103 CLFO_RS08550 CLFO_RS08565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS08610 SM00936 Penicillin-binding protein 5, C-terminal domain CLFO_RS08615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLFO_RS08715 SM00382 ATPases associated with a variety of cellular activities CLFO_RS08740 SM00465 GIY-YIG type nucleases (URI domain) CLFO_RS08755 SM00507 HNH nucleases CLFO_RS08855 SM00060 Fibronectin type 3 domain CLFO_RS08870 SM00646 CLFO_RS08870 CLFO_RS08875 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS08910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLFO_RS08915 SM00382 ATPases associated with a variety of cellular activities CLFO_RS08940 SM01323 CLFO_RS08940 CLFO_RS08990 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS08990 SM00954 Region found in RelA / SpoT proteins CLFO_RS09000 SM00849 Metallo-beta-lactamase superfamily CLFO_RS09005 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS09050 SM00091 PAS domain CLFO_RS09050 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09120 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09165 SM00984 UDP binding domain CLFO_RS09225 SM00220 Serine/Threonine protein kinases, catalytic domain CLFO_RS09270 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS09290 SM00732 Likely ribonuclease with RNase H fold. CLFO_RS09315 SM00849 Metallo-beta-lactamase superfamily CLFO_RS09335 SM00422 helix_turn_helix, mercury resistance CLFO_RS09345 SM00257 Lysin motif CLFO_RS09380 SM00871 Bacterial transcription activator, effector binding domain CLFO_RS09385 SM00422 helix_turn_helix, mercury resistance CLFO_RS09385 SM00871 Bacterial transcription activator, effector binding domain CLFO_RS09430 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS09430 SM00871 Bacterial transcription activator, effector binding domain CLFO_RS09445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CLFO_RS09445 SM00091 PAS domain CLFO_RS09445 SM00387 Histidine kinase-like ATPases CLFO_RS09445 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS09460 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLFO_RS09460 SM00387 Histidine kinase-like ATPases CLFO_RS09460 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS09465 SM00448 cheY-homologous receiver domain CLFO_RS09470 SM00448 cheY-homologous receiver domain CLFO_RS09475 SM00091 PAS domain CLFO_RS09475 SM00387 Histidine kinase-like ATPases CLFO_RS09475 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS09495 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09500 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS09510 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS09510 SM00448 cheY-homologous receiver domain CLFO_RS09550 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09555 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09590 SM00842 Cell division protein FtsA CLFO_RS09645 SM00841 Elongation factor P, C-terminal CLFO_RS09645 SM01185 CLFO_RS09645 CLFO_RS09655 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09740 SM00861 Transketolase, pyrimidine binding domain CLFO_RS09745 SM00363 S4 RNA-binding domain CLFO_RS09765 SM00448 cheY-homologous receiver domain CLFO_RS09775 SM00479 CLFO_RS09775 CLFO_RS09840 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CLFO_RS09845 SM00936 Penicillin-binding protein 5, C-terminal domain CLFO_RS09850 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS09890 SM00936 Penicillin-binding protein 5, C-terminal domain CLFO_RS09925 SM00387 Histidine kinase-like ATPases CLFO_RS09925 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS09930 SM00448 cheY-homologous receiver domain CLFO_RS09930 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS09950 SM00434 DNA Topoisomerase IV CLFO_RS09955 SM00387 Histidine kinase-like ATPases CLFO_RS09955 SM00433 TopoisomeraseII CLFO_RS09970 SM00858 CLFO_RS09970 CLFO_RS09975 SM00091 PAS domain CLFO_RS09975 SM00382 ATPases associated with a variety of cellular activities CLFO_RS09985 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10000 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS10025 SM00877 CLFO_RS10025 CLFO_RS10060 SM00877 CLFO_RS10060 CLFO_RS10065 SM00877 CLFO_RS10065 CLFO_RS10070 SM00877 CLFO_RS10070 CLFO_RS10075 SM00387 Histidine kinase-like ATPases CLFO_RS10080 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS10080 SM00448 cheY-homologous receiver domain CLFO_RS10095 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS10105 SM00387 Histidine kinase-like ATPases CLFO_RS10105 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS10110 SM00448 cheY-homologous receiver domain CLFO_RS10110 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS10115 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10140 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10145 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS10225 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS10230 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS10285 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10300 SM00853 MutL C terminal dimerisation domain CLFO_RS10300 SM01340 CLFO_RS10300 CLFO_RS10305 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLFO_RS10305 SM00534 ATPase domain of DNA mismatch repair MUTS family CLFO_RS10310 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS10325 SM00644 CLFO_RS10325 CLFO_RS10390 SM00257 Lysin motif CLFO_RS10480 SM00470 ParB-like nuclease domain CLFO_RS10565 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10575 SM00849 Metallo-beta-lactamase superfamily CLFO_RS10615 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS10620 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS10635 SM00857 Resolvase, N terminal domain CLFO_RS10655 SM00422 helix_turn_helix, mercury resistance CLFO_RS10675 SM00138 Methyltransferase, chemotaxis proteins CLFO_RS10680 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS10700 SM00855 Phosphoglycerate mutase family CLFO_RS10735 SM00363 S4 RNA-binding domain CLFO_RS10745 SM00998 Adenylosuccinate lyase C-terminus CLFO_RS10760 SM00481 DNA polymerase alpha chain like domain CLFO_RS10770 SM00322 K homology RNA-binding domain CLFO_RS10770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS10790 SM00507 HNH nucleases CLFO_RS10815 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS10820 SM00450 Rhodanese Homology Domain CLFO_RS10825 SM00382 ATPases associated with a variety of cellular activities CLFO_RS10825 SM00843 CLFO_RS10825 CLFO_RS10850 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS10850 SM00322 K homology RNA-binding domain CLFO_RS10855 SM01387 CLFO_RS10855 CLFO_RS10860 SM00904 Riboflavin kinase CLFO_RS10895 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS10905 SM00479 CLFO_RS10905 CLFO_RS10905 SM00481 DNA polymerase alpha chain like domain CLFO_RS10920 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLFO_RS10980 SM01245 CLFO_RS10980 CLFO_RS11000 SM00260 Two component signalling adaptor domain CLFO_RS11005 SM00073 Histidine Phosphotransfer domain CLFO_RS11005 SM00260 Two component signalling adaptor domain CLFO_RS11005 SM00387 Histidine kinase-like ATPases CLFO_RS11005 SM01231 CLFO_RS11005 CLFO_RS11010 SM00448 cheY-homologous receiver domain CLFO_RS11025 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11025 SM00962 SRP54-type protein, GTPase domain CLFO_RS11060 SM00448 cheY-homologous receiver domain CLFO_RS11125 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11165 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11165 SM01086 C-terminal, D2-small domain, of ClpB protein CLFO_RS11175 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLFO_RS11175 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLFO_RS11175 SM00493 CLFO_RS11175 CLFO_RS11185 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11230 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11230 SM00962 SRP54-type protein, GTPase domain CLFO_RS11230 SM00963 SRP54-type protein, helical bundle domain CLFO_RS11240 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11240 SM00962 SRP54-type protein, GTPase domain CLFO_RS11240 SM00963 SRP54-type protein, helical bundle domain CLFO_RS11245 SM00968 SMC proteins Flexible Hinge Domain CLFO_RS11250 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS11255 SM00358 Double-stranded RNA binding motif CLFO_RS11255 SM00535 Ribonuclease III family CLFO_RS11260 SM00825 Beta-ketoacyl synthase CLFO_RS11270 SM00822 CLFO_RS11270 CLFO_RS11275 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CLFO_RS11340 SM00487 DEAD-like helicases superfamily CLFO_RS11340 SM00490 helicase superfamily c-terminal domain CLFO_RS11345 SM01120 CLFO_RS11345 CLFO_RS11345 SM01121 CLFO_RS11345 CLFO_RS11360 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CLFO_RS11375 SM00220 Serine/Threonine protein kinases, catalytic domain CLFO_RS11375 SM00740 CLFO_RS11375 CLFO_RS11380 SM00331 Sigma factor PP2C-like phosphatases CLFO_RS11380 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CLFO_RS11415 SM00487 DEAD-like helicases superfamily CLFO_RS11415 SM00490 helicase superfamily c-terminal domain CLFO_RS11425 SM01409 CLFO_RS11425 CLFO_RS11430 SM00072 Guanylate kinase homologues. CLFO_RS11460 SM00363 S4 RNA-binding domain CLFO_RS11490 SM00363 S4 RNA-binding domain CLFO_RS11535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS11535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS11550 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS11555 SM00487 DEAD-like helicases superfamily CLFO_RS11580 SM00857 Resolvase, N terminal domain CLFO_RS11610 SM01207 CLFO_RS11610 CLFO_RS11620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLFO_RS11655 SM00091 PAS domain CLFO_RS11655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS11655 SM00387 Histidine kinase-like ATPases CLFO_RS11655 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS11660 SM00448 cheY-homologous receiver domain CLFO_RS11660 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS11695 SM00864 Tubulin/FtsZ family, GTPase domain CLFO_RS11695 SM00865 Tubulin/FtsZ family, C-terminal domain CLFO_RS11755 SM00740 CLFO_RS11755 CLFO_RS11790 SM01133 CLFO_RS11790 CLFO_RS11925 SM00382 ATPases associated with a variety of cellular activities CLFO_RS11960 SM01060 CLFO_RS11960 CLFO_RS11970 SM00052 Putative diguanylate phosphodiesterase CLFO_RS11995 SM00487 DEAD-like helicases superfamily CLFO_RS12035 SM01350 CLFO_RS12035 CLFO_RS12045 SM01018 B12 binding domain CLFO_RS12065 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12075 SM00878 Biotin carboxylase C-terminal domain CLFO_RS12100 SM01018 B12 binding domain CLFO_RS12115 SM00833 Cobalamin synthesis protein cobW C-terminal domain CLFO_RS12135 SM00387 Histidine kinase-like ATPases CLFO_RS12135 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS12170 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12180 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12190 SM00062 Bacterial periplasmic substrate-binding proteins CLFO_RS12210 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12255 SM00400 zinc finger CLFO_RS12255 SM00493 CLFO_RS12255 CLFO_RS12260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS12290 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12300 SM00155 Phospholipase D. Active site motifs. CLFO_RS12305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS12305 SM00387 Histidine kinase-like ATPases CLFO_RS12305 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS12310 SM00448 cheY-homologous receiver domain CLFO_RS12310 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS12340 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS12375 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS12415 SM00014 Acid phosphatase homologues CLFO_RS12425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS12480 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS12495 SM00271 DnaJ molecular chaperone homology domain CLFO_RS12515 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS12520 SM00838 Elongation factor G C-terminus CLFO_RS12560 SM00448 cheY-homologous receiver domain CLFO_RS12560 SM00850 LytTr DNA-binding domain CLFO_RS12565 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12590 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12615 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12635 SM00849 Metallo-beta-lactamase superfamily CLFO_RS12640 SM00028 Tetratricopeptide repeats CLFO_RS12645 SM00849 Metallo-beta-lactamase superfamily CLFO_RS12655 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CLFO_RS12665 SM00487 DEAD-like helicases superfamily CLFO_RS12665 SM00490 helicase superfamily c-terminal domain CLFO_RS12710 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12725 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS12740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS12745 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS12755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS12760 SM00448 cheY-homologous receiver domain CLFO_RS12760 SM01012 CLFO_RS12760 CLFO_RS12765 SM01230 CLFO_RS12765 CLFO_RS12770 SM00845 GatB domain CLFO_RS12805 SM01321 CLFO_RS12805 CLFO_RS12850 SM00829 Enoylreductase CLFO_RS12870 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS12870 SM00895 CLFO_RS12870 CLFO_RS12885 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12890 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12895 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12900 SM00382 ATPases associated with a variety of cellular activities CLFO_RS12950 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS12950 SM00895 CLFO_RS12950 CLFO_RS12955 SM00831 Cation transporter/ATPase, N-terminus CLFO_RS12990 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13005 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13045 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13075 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS13080 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS13085 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS13105 SM00829 Enoylreductase CLFO_RS13120 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13125 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS13125 SM00448 cheY-homologous receiver domain CLFO_RS13130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS13140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS13140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS13160 SM00155 Phospholipase D. Active site motifs. CLFO_RS13165 SM00534 ATPase domain of DNA mismatch repair MUTS family CLFO_RS13175 SM01116 CLFO_RS13175 CLFO_RS13200 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS13215 SM00518 AP endonuclease family 2 CLFO_RS13225 SM00344 helix_turn_helix ASNC type CLFO_RS13410 SM00465 GIY-YIG type nucleases (URI domain) CLFO_RS13425 SM00448 cheY-homologous receiver domain CLFO_RS13425 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS13430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS13430 SM00387 Histidine kinase-like ATPases CLFO_RS13430 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS13450 SM00646 CLFO_RS13450 CLFO_RS13540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS13540 SM00387 Histidine kinase-like ATPases CLFO_RS13540 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS13545 SM00448 cheY-homologous receiver domain CLFO_RS13545 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS13575 SM00257 Lysin motif CLFO_RS13575 SM00636 CLFO_RS13575 CLFO_RS13615 SM00421 helix_turn_helix, Lux Regulon CLFO_RS13615 SM00448 cheY-homologous receiver domain CLFO_RS13640 SM00448 cheY-homologous receiver domain CLFO_RS13645 SM00091 PAS domain CLFO_RS13645 SM00387 Histidine kinase-like ATPases CLFO_RS13650 SM00900 CLFO_RS13650 CLFO_RS13690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS13690 SM00387 Histidine kinase-like ATPases CLFO_RS13690 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS13695 SM00448 cheY-homologous receiver domain CLFO_RS13695 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS13715 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS13725 SM00852 Probable molybdopterin binding domain CLFO_RS13745 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13760 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13780 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13795 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS13825 SM00900 CLFO_RS13825 CLFO_RS13865 SM00331 Sigma factor PP2C-like phosphatases CLFO_RS13935 SM00450 Rhodanese Homology Domain CLFO_RS13940 SM00382 ATPases associated with a variety of cellular activities CLFO_RS13990 SM00357 Cold shock protein domain CLFO_RS14005 SM01018 B12 binding domain CLFO_RS14020 SM00487 DEAD-like helicases superfamily CLFO_RS14020 SM00490 helicase superfamily c-terminal domain CLFO_RS14030 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS14030 SM00871 Bacterial transcription activator, effector binding domain CLFO_RS14050 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS14105 SM00903 Flavin reductase like domain CLFO_RS14130 SM01130 CLFO_RS14130 CLFO_RS14160 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14175 SM00257 Lysin motif CLFO_RS14200 SM00873 B3/4 domain CLFO_RS14235 SM01321 CLFO_RS14235 CLFO_RS14270 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS14270 SM00357 Cold shock protein domain CLFO_RS14270 SM00955 CLFO_RS14270 CLFO_RS14290 SM01192 CLFO_RS14290 CLFO_RS14290 SM01193 CLFO_RS14290 CLFO_RS14310 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLFO_RS14425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS14475 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS14480 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14495 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14500 SM00387 Histidine kinase-like ATPases CLFO_RS14505 SM00448 cheY-homologous receiver domain CLFO_RS14505 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS14510 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS14535 SM00331 Sigma factor PP2C-like phosphatases CLFO_RS14540 SM00267 diguanylate cyclase CLFO_RS14545 SM01130 CLFO_RS14545 CLFO_RS14555 SM00858 CLFO_RS14555 CLFO_RS14570 SM00859 Semialdehyde dehydrogenase, NAD binding domain CLFO_RS14575 SM00346 helix_turn_helix isocitrate lyase regulation CLFO_RS14585 SM00448 cheY-homologous receiver domain CLFO_RS14590 SM00091 PAS domain CLFO_RS14590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS14590 SM00387 Histidine kinase-like ATPases CLFO_RS14590 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS14615 SM00448 cheY-homologous receiver domain CLFO_RS14620 SM00448 cheY-homologous receiver domain CLFO_RS14625 SM00091 PAS domain CLFO_RS14625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS14625 SM00387 Histidine kinase-like ATPases CLFO_RS14625 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS14630 SM00947 Carbonic anhydrase CLFO_RS14635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS14635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS14690 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14710 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS14745 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLFO_RS14745 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLFO_RS14745 SM00493 CLFO_RS14745 CLFO_RS14750 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14755 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14760 SM00487 DEAD-like helicases superfamily CLFO_RS14760 SM00490 helicase superfamily c-terminal domain CLFO_RS14780 SM00260 Two component signalling adaptor domain CLFO_RS14780 SM00448 cheY-homologous receiver domain CLFO_RS14785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS14785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS14805 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS14815 SM01018 B12 binding domain CLFO_RS14845 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14920 SM01130 CLFO_RS14920 CLFO_RS14935 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS14935 SM00895 CLFO_RS14935 CLFO_RS14960 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14965 SM00422 helix_turn_helix, mercury resistance CLFO_RS14970 SM00382 ATPases associated with a variety of cellular activities CLFO_RS14985 SM01005 Alanine racemase, C-terminal domain CLFO_RS15000 SM00387 Histidine kinase-like ATPases CLFO_RS15000 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS15005 SM00448 cheY-homologous receiver domain CLFO_RS15005 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS15010 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS15015 SM00422 helix_turn_helix, mercury resistance CLFO_RS15025 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15035 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15045 SM00387 Histidine kinase-like ATPases CLFO_RS15045 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS15050 SM00448 cheY-homologous receiver domain CLFO_RS15050 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS15060 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15110 SM00636 CLFO_RS15110 CLFO_RS15125 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15140 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15150 SM00849 Metallo-beta-lactamase superfamily CLFO_RS15155 SM00100 Cyclic nucleotide-monophosphate binding domain CLFO_RS15155 SM00419 helix_turn_helix, cAMP Regulatory protein CLFO_RS15160 SM00900 CLFO_RS15160 CLFO_RS15190 SM00849 Metallo-beta-lactamase superfamily CLFO_RS15195 SM00421 helix_turn_helix, Lux Regulon CLFO_RS15195 SM00448 cheY-homologous receiver domain CLFO_RS15215 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15230 SM00091 PAS domain CLFO_RS15230 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15240 SM00822 CLFO_RS15240 CLFO_RS15250 SM00882 Coenzyme A transferase CLFO_RS15265 SM00344 helix_turn_helix ASNC type CLFO_RS15305 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15360 SM00849 Metallo-beta-lactamase superfamily CLFO_RS15370 SM01321 CLFO_RS15370 CLFO_RS15380 SM00387 Histidine kinase-like ATPases CLFO_RS15380 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS15385 SM00448 cheY-homologous receiver domain CLFO_RS15385 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS15460 SM00954 Region found in RelA / SpoT proteins CLFO_RS15470 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS15480 SM00257 Lysin motif CLFO_RS15520 SM00919 Malic enzyme, NAD binding domain CLFO_RS15520 SM01274 CLFO_RS15520 CLFO_RS15530 SM00052 Putative diguanylate phosphodiesterase CLFO_RS15530 SM00267 diguanylate cyclase CLFO_RS15530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS15545 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS15560 SM00028 Tetratricopeptide repeats CLFO_RS15560 SM00671 Sel1-like repeats. CLFO_RS15575 SM00763 PrkA AAA domain CLFO_RS15580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS15585 SM00260 Two component signalling adaptor domain CLFO_RS15590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS15590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS15595 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS15610 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15615 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15620 SM00448 cheY-homologous receiver domain CLFO_RS15620 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS15625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS15625 SM00387 Histidine kinase-like ATPases CLFO_RS15625 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS15640 SM00448 cheY-homologous receiver domain CLFO_RS15640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS15645 SM00387 Histidine kinase-like ATPases CLFO_RS15645 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS15645 SM00448 cheY-homologous receiver domain CLFO_RS15650 SM00897 FIST N domain CLFO_RS15650 SM01204 CLFO_RS15650 CLFO_RS15660 SM00267 diguanylate cyclase CLFO_RS15660 SM00387 Histidine kinase-like ATPases CLFO_RS15660 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS15660 SM00448 cheY-homologous receiver domain CLFO_RS15680 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15725 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS15740 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15745 SM00062 Bacterial periplasmic substrate-binding proteins CLFO_RS15770 SM00028 Tetratricopeptide repeats CLFO_RS15775 SM00028 Tetratricopeptide repeats CLFO_RS15810 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS15845 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15850 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15900 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15905 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15925 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15930 SM00382 ATPases associated with a variety of cellular activities CLFO_RS15960 SM00829 Enoylreductase CLFO_RS15965 SM00354 helix_turn _helix lactose operon repressor CLFO_RS16000 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16010 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS16045 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16060 SM00100 Cyclic nucleotide-monophosphate binding domain CLFO_RS16095 SM00831 Cation transporter/ATPase, N-terminus CLFO_RS16105 SM00387 Histidine kinase-like ATPases CLFO_RS16105 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS16120 SM00829 Enoylreductase CLFO_RS16140 SM00354 helix_turn _helix lactose operon repressor CLFO_RS16160 SM00347 helix_turn_helix multiple antibiotic resistance protein CLFO_RS16165 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16170 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16190 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16200 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CLFO_RS16200 SM00534 ATPase domain of DNA mismatch repair MUTS family CLFO_RS16285 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16350 SM01018 B12 binding domain CLFO_RS16395 SM00491 CLFO_RS16395 CLFO_RS16415 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS16460 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16465 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16485 SM00877 CLFO_RS16485 CLFO_RS16500 SM00877 CLFO_RS16500 CLFO_RS16510 SM00877 CLFO_RS16510 CLFO_RS16525 SM00877 CLFO_RS16525 CLFO_RS16545 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16560 SM00877 CLFO_RS16560 CLFO_RS16565 SM00877 CLFO_RS16565 CLFO_RS16590 SM00387 Histidine kinase-like ATPases CLFO_RS16595 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS16595 SM00448 cheY-homologous receiver domain CLFO_RS16615 SM00257 Lysin motif CLFO_RS16630 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLFO_RS16635 SM01092 CO dehydrogenase flavoprotein C-terminal domain CLFO_RS16675 SM00861 Transketolase, pyrimidine binding domain CLFO_RS16690 SM01120 CLFO_RS16690 CLFO_RS16705 SM00829 Enoylreductase CLFO_RS16715 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS16715 SM00448 cheY-homologous receiver domain CLFO_RS16720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS16720 SM00387 Histidine kinase-like ATPases CLFO_RS16770 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS16770 SM00871 Bacterial transcription activator, effector binding domain CLFO_RS16825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS16825 SM00387 Histidine kinase-like ATPases CLFO_RS16825 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS16830 SM00448 cheY-homologous receiver domain CLFO_RS16830 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS16840 SM01321 CLFO_RS16840 CLFO_RS16865 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16885 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS16930 SM01321 CLFO_RS16930 CLFO_RS16975 SM00382 ATPases associated with a variety of cellular activities CLFO_RS16990 SM00857 Resolvase, N terminal domain CLFO_RS17045 SM00267 diguanylate cyclase CLFO_RS17105 SM00507 HNH nucleases CLFO_RS17115 SM00487 DEAD-like helicases superfamily CLFO_RS17165 SM00220 Serine/Threonine protein kinases, catalytic domain CLFO_RS17165 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS17175 SM00990 CLFO_RS17175 CLFO_RS17190 SM00400 zinc finger CLFO_RS17215 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS17220 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS17235 SM00857 Resolvase, N terminal domain CLFO_RS17290 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS17335 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CLFO_RS17335 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CLFO_RS17335 SM00493 CLFO_RS17335 CLFO_RS17415 SM00909 Sporulation and spore germination CLFO_RS17465 SM00481 DNA polymerase alpha chain like domain CLFO_RS17485 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS17485 SM00866 CLFO_RS17485 CLFO_RS17490 SM01018 B12 binding domain CLFO_RS17495 SM01018 B12 binding domain CLFO_RS17520 SM01018 B12 binding domain CLFO_RS17530 SM01018 B12 binding domain CLFO_RS17540 SM00028 Tetratricopeptide repeats CLFO_RS17540 SM01043 Bacterial transcriptional activator domain CLFO_RS17555 SM01221 CLFO_RS17555 CLFO_RS17555 SM01222 CLFO_RS17555 CLFO_RS17565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS17610 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS17630 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS17645 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLFO_RS17650 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLFO_RS17670 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CLFO_RS17670 SM00465 GIY-YIG type nucleases (URI domain) CLFO_RS17680 SM00382 ATPases associated with a variety of cellular activities CLFO_RS17685 SM00487 DEAD-like helicases superfamily CLFO_RS17685 SM00490 helicase superfamily c-terminal domain CLFO_RS17690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLFO_RS17690 SM00245 tail specific protease CLFO_RS17705 SM00382 ATPases associated with a variety of cellular activities CLFO_RS17715 SM00382 ATPases associated with a variety of cellular activities CLFO_RS17715 SM00448 cheY-homologous receiver domain CLFO_RS17720 SM00387 Histidine kinase-like ATPases CLFO_RS17720 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS17785 SM00382 ATPases associated with a variety of cellular activities CLFO_RS17790 SM00382 ATPases associated with a variety of cellular activities CLFO_RS17815 SM00257 Lysin motif CLFO_RS17820 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS17820 SM00382 ATPases associated with a variety of cellular activities CLFO_RS17845 SM00861 Transketolase, pyrimidine binding domain CLFO_RS17895 SM01005 Alanine racemase, C-terminal domain CLFO_RS17980 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS18010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS18040 SM00851 MGS-like domain CLFO_RS18040 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLFO_RS18040 SM01209 CLFO_RS18040 CLFO_RS18045 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CLFO_RS18050 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CLFO_RS18065 SM01329 CLFO_RS18065 CLFO_RS18105 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS18110 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS18130 SM00138 Methyltransferase, chemotaxis proteins CLFO_RS18135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLFO_RS18135 SM00387 Histidine kinase-like ATPases CLFO_RS18135 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS18135 SM00448 cheY-homologous receiver domain CLFO_RS18140 SM00387 Histidine kinase-like ATPases CLFO_RS18140 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS18140 SM00448 cheY-homologous receiver domain CLFO_RS18155 SM00448 cheY-homologous receiver domain CLFO_RS18180 SM00642 Alpha-amylase domain CLFO_RS18205 SM00642 Alpha-amylase domain CLFO_RS18265 SM00478 endonuclease III CLFO_RS18265 SM00525 CLFO_RS18265 CLFO_RS18270 SM00986 Uracil DNA glycosylase superfamily CLFO_RS18270 SM00987 UreE urease accessory protein, C-terminal domain CLFO_RS18310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS18345 SM00419 helix_turn_helix, cAMP Regulatory protein CLFO_RS18355 SM00849 Metallo-beta-lactamase superfamily CLFO_RS18360 SM00382 ATPases associated with a variety of cellular activities CLFO_RS18365 SM00382 ATPases associated with a variety of cellular activities CLFO_RS18390 SM00347 helix_turn_helix multiple antibiotic resistance protein CLFO_RS18395 SM00387 Histidine kinase-like ATPases CLFO_RS18400 SM00448 cheY-homologous receiver domain CLFO_RS18420 SM00764 Citrate lyase ligase C-terminal domain CLFO_RS18480 SM01018 B12 binding domain CLFO_RS18500 SM01018 B12 binding domain CLFO_RS18505 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS18510 SM00448 cheY-homologous receiver domain CLFO_RS18515 SM00091 PAS domain CLFO_RS18515 SM00387 Histidine kinase-like ATPases CLFO_RS18515 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS18515 SM00448 cheY-homologous receiver domain CLFO_RS18520 SM00448 cheY-homologous receiver domain CLFO_RS18525 SM00138 Methyltransferase, chemotaxis proteins CLFO_RS18530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS18530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS18535 SM00260 Two component signalling adaptor domain CLFO_RS18540 SM00073 Histidine Phosphotransfer domain CLFO_RS18540 SM00260 Two component signalling adaptor domain CLFO_RS18540 SM00387 Histidine kinase-like ATPases CLFO_RS18540 SM01231 CLFO_RS18540 CLFO_RS18570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS18570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS18590 SM00382 ATPases associated with a variety of cellular activities CLFO_RS18620 SM00346 helix_turn_helix isocitrate lyase regulation CLFO_RS18655 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS18660 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CLFO_RS18660 SM00267 diguanylate cyclase CLFO_RS18670 SM00382 ATPases associated with a variety of cellular activities CLFO_RS18680 SM00387 Histidine kinase-like ATPases CLFO_RS18685 SM00448 cheY-homologous receiver domain CLFO_RS18685 SM00850 LytTr DNA-binding domain CLFO_RS18700 SM01266 CLFO_RS18700 CLFO_RS18705 SM00382 ATPases associated with a variety of cellular activities CLFO_RS18850 SM01321 CLFO_RS18850 CLFO_RS18895 SM00091 PAS domain CLFO_RS18895 SM00382 ATPases associated with a variety of cellular activities CLFO_RS19350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS19360 SM00849 Metallo-beta-lactamase superfamily CLFO_RS19365 SM00257 Lysin motif CLFO_RS19380 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CLFO_RS19405 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CLFO_RS19415 SM00382 ATPases associated with a variety of cellular activities CLFO_RS19430 SM00116 Domain in cystathionine beta-synthase and other proteins. CLFO_RS19455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS19455 SM00387 Histidine kinase-like ATPases CLFO_RS19455 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS19475 SM00257 Lysin motif CLFO_RS19480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS19480 SM00387 Histidine kinase-like ATPases CLFO_RS19480 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS19510 SM00646 CLFO_RS19510 CLFO_RS19545 SM00382 ATPases associated with a variety of cellular activities CLFO_RS19550 SM00382 ATPases associated with a variety of cellular activities CLFO_RS19560 SM00662 RNA polymerases D CLFO_RS19565 SM00363 S4 RNA-binding domain CLFO_RS19565 SM01390 CLFO_RS19565 CLFO_RS19585 SM00316 Ribosomal protein S1-like RNA-binding domain CLFO_RS19650 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLFO_RS19655 SM01374 CLFO_RS19655 CLFO_RS19675 SM00322 K homology RNA-binding domain CLFO_RS19690 SM01382 CLFO_RS19690 CLFO_RS19690 SM01383 CLFO_RS19690 CLFO_RS19710 SM01403 CLFO_RS19710 CLFO_RS19720 SM00838 Elongation factor G C-terminus CLFO_RS19720 SM00889 Elongation factor G, domain IV CLFO_RS19740 SM00663 RNA polymerase I subunit A N-terminus CLFO_RS19765 SM00649 Ribosomal protein L11/L12 CLFO_RS19770 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CLFO_RS19770 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CLFO_RS19800 SM00967 RNA 2'-O ribose methyltransferase substrate binding CLFO_RS19815 SM00535 Ribonuclease III family CLFO_RS19820 SM00840 CLFO_RS19820 CLFO_RS19840 SM00946 Prolyl-tRNA synthetase, C-terminal CLFO_RS19855 SM00670 Large family of predicted nucleotide-binding domains CLFO_RS19860 SM01058 CarD-like/TRCF domain CLFO_RS19875 SM00382 ATPases associated with a variety of cellular activities CLFO_RS19880 SM00382 ATPases associated with a variety of cellular activities CLFO_RS19880 SM01086 C-terminal, D2-small domain, of ClpB protein CLFO_RS19900 SM00838 Elongation factor G C-terminus CLFO_RS19900 SM00889 Elongation factor G, domain IV CLFO_RS19920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS19930 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20015 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20020 SM00977 TilS substrate C-terminal domain CLFO_RS20025 SM00220 Serine/Threonine protein kinases, catalytic domain CLFO_RS20040 SM00981 CLFO_RS20040 CLFO_RS20050 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS20055 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS20085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS20135 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS20135 SM00895 CLFO_RS20135 CLFO_RS20145 SM00257 Lysin motif CLFO_RS20165 SM00646 CLFO_RS20165 CLFO_RS20170 SM00347 helix_turn_helix multiple antibiotic resistance protein CLFO_RS20185 SM00900 CLFO_RS20185 CLFO_RS20195 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS20215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS20220 SM01131 CLFO_RS20220 CLFO_RS20245 SM00849 Metallo-beta-lactamase superfamily CLFO_RS20290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CLFO_RS20290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS20315 SM00091 PAS domain CLFO_RS20315 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20325 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS20335 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLFO_RS20340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CLFO_RS20350 SM00893 Electron transfer flavoprotein domain CLFO_RS20355 SM00893 Electron transfer flavoprotein domain CLFO_RS20375 SM00890 Domain of unknown function CLFO_RS20380 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS20380 SM00895 CLFO_RS20380 CLFO_RS20405 SM00155 Phospholipase D. Active site motifs. CLFO_RS20415 SM00890 Domain of unknown function CLFO_RS20480 SM00876 Biotin and Thiamin Synthesis associated domain CLFO_RS20510 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20510 SM01086 C-terminal, D2-small domain, of ClpB protein CLFO_RS20540 SM00858 CLFO_RS20540 CLFO_RS20545 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20550 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CLFO_RS20625 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain CLFO_RS20655 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS20655 SM00895 CLFO_RS20655 CLFO_RS20670 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20715 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLFO_RS20720 SM00363 S4 RNA-binding domain CLFO_RS20800 SM00342 helix_turn_helix, arabinose operon control protein CLFO_RS20815 SM00422 helix_turn_helix, mercury resistance CLFO_RS20830 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS20830 SM00895 CLFO_RS20830 CLFO_RS20890 SM00345 helix_turn_helix gluconate operon transcriptional repressor CLFO_RS20900 SM00382 ATPases associated with a variety of cellular activities CLFO_RS20955 SM00014 Acid phosphatase homologues CLFO_RS20965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CLFO_RS20970 SM00849 Metallo-beta-lactamase superfamily CLFO_RS20995 SM00091 PAS domain CLFO_RS20995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CLFO_RS20995 SM00387 Histidine kinase-like ATPases CLFO_RS20995 SM00388 His Kinase A (phosphoacceptor) domain CLFO_RS21000 SM00448 cheY-homologous receiver domain CLFO_RS21000 SM00862 Transcriptional regulatory protein, C terminal CLFO_RS21015 SM00257 Lysin motif CLFO_RS21015 SM01208 CLFO_RS21015 CLFO_RS21030 SM00382 ATPases associated with a variety of cellular activities CLFO_RS21035 SM00382 ATPases associated with a variety of cellular activities CLFO_RS21040 SM00382 ATPases associated with a variety of cellular activities CLFO_RS21045 SM00729 Elongator protein 3, MiaB family, Radical SAM CLFO_RS21055 SM00448 cheY-homologous receiver domain CLFO_RS21055 SM00850 LytTr DNA-binding domain CLFO_RS21065 SM00387 Histidine kinase-like ATPases CLFO_RS21085 SM00788 Adenylosuccinate synthetase CLFO_RS21145 SM00052 Putative diguanylate phosphodiesterase CLFO_RS21145 SM00091 PAS domain CLFO_RS21145 SM00267 diguanylate cyclase CLFO_RS21305 SM00530 Helix-turn-helix XRE-family like proteins CLFO_RS21335 SM00493 CLFO_RS21335 CLFO_RS21345 SM00382 ATPases associated with a variety of cellular activities CLFO_RS21385 SM00470 ParB-like nuclease domain CLFO_RS21400 SM00470 ParB-like nuclease domain CLFO_RS21410 SM01228 CLFO_RS21410 CLFO_RS21420 SM00393 Putative single-stranded nucleic acids-binding domain CLFO_RS21420 SM01245 CLFO_RS21420 CLFO_RS21430 SM01234 CLFO_RS21430