locus-tag	class	description
CLJU_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CLJU_RS00010	COG0592	DNA-directed DNA polymerase activity
CLJU_RS00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLJU_RS00030	COG0187	DNA topoisomerase II activity
CLJU_RS00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLJU_RS00065	COG1827	regulation of RNA biosynthetic process
CLJU_RS00070	COG1615	UPF0182 protein
CLJU_RS00085	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CLJU_RS00105	COG0582	viral genome integration into host DNA
CLJU_RS00180	COG3728	DNA packaging
CLJU_RS00180	COG5484	DNA packaging
CLJU_RS00205	COG3953	SLT domain
CLJU_RS00205	COG5280	Phage tail tape measure protein TP901
CLJU_RS00230	COG1395	domain, Protein
CLJU_RS00280	COG1846	Transcriptional regulator
CLJU_RS00280	COG0456	acetyltransferase
CLJU_RS00290	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLJU_RS00295	COG0129	dihydroxy-acid dehydratase activity
CLJU_RS00305	COG0662	Cupin 2, conserved barrel domain protein
CLJU_RS00310	COG3708	Transcriptional regulator
CLJU_RS00310	COG2207	Transcriptional regulator
CLJU_RS00315	COG0561	phosphatase activity
CLJU_RS00320	COG0191	fructose-bisphosphate aldolase activity
CLJU_RS00330	COG2084	Dehydrogenase
CLJU_RS00340	COG0688	phosphatidylethanolamine metabolic process
CLJU_RS00345	COG1309	transcriptional regulator
CLJU_RS00390	COG2205	protein histidine kinase activity
CLJU_RS00395	COG0745	RESPONSE REGULATOR receiver
CLJU_RS00410	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CLJU_RS00415	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CLJU_RS00420	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CLJU_RS00435	COG1489	DNA binding
CLJU_RS00465	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CLJU_RS00470	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLJU_RS00510	COG0745	RESPONSE REGULATOR receiver
CLJU_RS00515	COG5002	protein histidine kinase activity
CLJU_RS00520	COG1136	(ABC) transporter
CLJU_RS00530	COG1363	Peptidase, m42
CLJU_RS00535	COG1363	Peptidase, m42
CLJU_RS00540	COG1363	Peptidase, m42
CLJU_RS00550	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CLJU_RS00575	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLJU_RS00580	COG2017	converts alpha-aldose to the beta-anomer
CLJU_RS00585	COG2160	L-arabinose isomerase activity
CLJU_RS00590	COG0235	Class ii aldolase
CLJU_RS00600	COG1609	Transcriptional regulator
CLJU_RS00620	COG1129	ABC transporter
CLJU_RS00625	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLJU_RS00645	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CLJU_RS00660	COG1619	proteins homologs of microcin C7 resistance protein MccF
CLJU_RS00675	COG1982	Orn Lys Arg decarboxylase major
CLJU_RS00685	COG3870	Protein conserved in bacteria
CLJU_RS00690	COG0470	DNA polymerase III
CLJU_RS00695	COG1774	PSP1 C-terminal conserved region
CLJU_RS00715	COG1360	Flagellar Motor Protein
CLJU_RS00720	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CLJU_RS00725	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLJU_RS00730	COG0791	NLP P60 protein
CLJU_RS00740	COG2002	toxin-antitoxin pair type II binding
CLJU_RS00745	COG0517	IMP dehydrogenase activity
CLJU_RS00745	COG0617	tRNA 3'-terminal CCA addition
CLJU_RS00745	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CLJU_RS00755	COG1842	Phage shock protein A
CLJU_RS00770	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CLJU_RS00780	COG0726	polysaccharide deacetylase
CLJU_RS00785	COG2076	Multidrug Resistance protein
CLJU_RS00805	COG3547	Transposase (IS116 IS110 IS902 family)
CLJU_RS00825	COG2715	membrane protein required for spore maturation
CLJU_RS00830	COG0700	Nucleoside recognition
CLJU_RS00835	COG1573	uracil-dna glycosylase
CLJU_RS00845	COG0084	hydrolase, TatD family'
CLJU_RS00850	COG3584	3D domain protein
CLJU_RS00850	COG3583	domain protein
CLJU_RS00855	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CLJU_RS00885	COG1141	Ferredoxin
CLJU_RS00895	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CLJU_RS00895	COG1328	CTP reductase activity
CLJU_RS00910	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CLJU_RS00915	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLJU_RS00920	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CLJU_RS00930	COG0586	Pfam SNARE associated Golgi protein
CLJU_RS00935	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
CLJU_RS00950	COG2094	Belongs to the DNA glycosylase MPG family
CLJU_RS00955	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
CLJU_RS00965	COG1653	transport
CLJU_RS01000	COG3642	lipopolysaccharide core region biosynthetic process
CLJU_RS01010	COG4466	Protein conserved in bacteria
CLJU_RS01020	COG4242	Belongs to the peptidase S51 family
CLJU_RS01030	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CLJU_RS01040	COG0697	spore germination
CLJU_RS01045	COG0814	amino acid
CLJU_RS01060	COG2959	enzyme of heme biosynthesis
CLJU_RS01075	COG0504	CTP synthase activity
CLJU_RS01085	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CLJU_RS01090	COG0254	rRNA binding
CLJU_RS01095	COG3872	metal-dependent enzyme
CLJU_RS01105	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CLJU_RS01120	COG0009	L-threonylcarbamoyladenylate synthase
CLJU_RS01125	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLJU_RS01130	COG0698	ribose 5-phosphate isomerase
CLJU_RS01135	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CLJU_RS01140	COG2131	deaminase
CLJU_RS01145	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLJU_RS01150	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CLJU_RS01160	COG0356	it plays a direct role in the translocation of protons across the membrane
CLJU_RS01165	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLJU_RS01170	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CLJU_RS01175	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CLJU_RS01185	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CLJU_RS01190	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CLJU_RS01195	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CLJU_RS01210	COG2385	sporulation resulting in formation of a cellular spore
CLJU_RS01220	COG1609	Transcriptional regulator
CLJU_RS01265	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CLJU_RS01285	COG0653	protein targeting
CLJU_RS01290	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CLJU_RS01295	COG2814	Major facilitator Superfamily
CLJU_RS01300	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CLJU_RS01310	COG2183	response to ionizing radiation
CLJU_RS01325	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLJU_RS01340	COG2357	RelA SpoT domain protein
CLJU_RS01345	COG0495	leucyl-tRNA aminoacylation
CLJU_RS01360	COG0484	heat shock protein binding
CLJU_RS01375	COG0191	fructose-bisphosphate aldolase activity
CLJU_RS01385	COG2323	membrane
CLJU_RS01390	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLJU_RS01395	COG1691	(AIR) carboxylase
CLJU_RS01405	COG0840	transmembrane signaling receptor activity
CLJU_RS01410	COG2172	sigma factor antagonist activity
CLJU_RS01425	COG1183	phosphatidylcholine synthase activity
CLJU_RS01430	COG0398	Pfam SNARE associated Golgi protein
CLJU_RS01435	COG0517	IMP dehydrogenase activity
CLJU_RS01440	COG1597	lipid kinase activity
CLJU_RS01455	COG2239	Acts as a magnesium transporter
CLJU_RS01470	COG0736	holo-[acyl-carrier-protein] synthase activity
CLJU_RS01475	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CLJU_RS01475	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CLJU_RS01495	COG3959	Transketolase, thiamine diphosphate binding domain
CLJU_RS01500	COG3958	Transketolase
CLJU_RS01505	COG2884	Cell division ATP-binding protein ftsE
CLJU_RS01510	COG2177	Part of the ABC transporter FtsEX involved in
CLJU_RS01515	COG3409	Peptidoglycan-binding domain 1 protein
CLJU_RS01515	COG0793	Belongs to the peptidase S41A family
CLJU_RS01520	COG0750	zinc metalloprotease
CLJU_RS01545	COG0768	penicillin binding
CLJU_RS01555	COG0322	excinuclease ABC activity
CLJU_RS01560	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CLJU_RS01565	COG1660	Displays ATPase and GTPase activities
CLJU_RS01570	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CLJU_RS01595	COG0469	pyruvate kinase activity
CLJU_RS01625	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CLJU_RS01630	COG1191	sigma factor activity
CLJU_RS01655	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLJU_RS01655	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLJU_RS01660	COG3617	BRO family, N-terminal domain
CLJU_RS01725	COG4626	Terminase
CLJU_RS01725	COG1802	Transcriptional regulator
CLJU_RS01735	COG0740	serine-type endopeptidase activity
CLJU_RS01860	COG2204	response regulator
CLJU_RS01870	COG1454	alcohol dehydrogenase
CLJU_RS01875	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLJU_RS01880	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CLJU_RS01890	COG2271	Major facilitator Superfamily
CLJU_RS01915	COG0840	transmembrane signaling receptor activity
CLJU_RS01925	COG0697	spore germination
CLJU_RS01930	COG0840	transmembrane signaling receptor activity
CLJU_RS01935	COG0463	Glycosyl transferase, family 2
CLJU_RS01975	COG0004	ammonium transporteR
CLJU_RS01980	COG0347	Belongs to the P(II) protein family
CLJU_RS01985	COG0116	Belongs to the methyltransferase superfamily
CLJU_RS01995	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLJU_RS02015	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CLJU_RS02025	COG1522	sequence-specific DNA binding
CLJU_RS02030	COG0281	malic enzyme
CLJU_RS02035	COG1027	Aspartate ammonia-lyase
CLJU_RS02045	COG0840	transmembrane signaling receptor activity
CLJU_RS02100	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLJU_RS02105	COG1301	dicarboxylic acid transport
CLJU_RS02115	COG2719	SpoVR family
CLJU_RS02120	COG2718	Belongs to the UPF0229 family
CLJU_RS02125	COG2766	serine protein kinase
CLJU_RS02130	COG1846	Transcriptional regulator
CLJU_RS02135	COG2814	Major facilitator Superfamily
CLJU_RS02140	COG1566	PFAM secretion protein HlyD family protein
CLJU_RS02145	COG1566	PFAM secretion protein HlyD family protein
CLJU_RS02160	COG1473	amidohydrolase
CLJU_RS02165	COG5002	protein histidine kinase activity
CLJU_RS02170	COG0745	RESPONSE REGULATOR receiver
CLJU_RS02175	COG0463	Glycosyl transferase, family 2
CLJU_RS02180	COG2246	polysaccharide biosynthetic process
CLJU_RS02185	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CLJU_RS02190	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CLJU_RS02195	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CLJU_RS02205	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CLJU_RS02225	COG0457	Tetratricopeptide repeat
CLJU_RS02225	COG0463	Glycosyl transferase, family 2
CLJU_RS02230	COG2205	protein histidine kinase activity
CLJU_RS02245	COG0745	RESPONSE REGULATOR receiver
CLJU_RS02250	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLJU_RS02255	COG2011	ABC-type metal ion transport system permease component
CLJU_RS02260	COG3875	lactate racemase activity
CLJU_RS02275	COG0436	Aminotransferase
CLJU_RS02280	COG3773	Cell wall hydrolase
CLJU_RS02280	COG3409	Peptidoglycan-binding domain 1 protein
CLJU_RS02290	COG0477	Major facilitator Superfamily
CLJU_RS02295	COG1846	Transcriptional regulator
CLJU_RS02325	COG0531	amino acid
CLJU_RS02330	COG0531	amino acid
CLJU_RS02335	COG0840	transmembrane signaling receptor activity
CLJU_RS02340	COG5002	protein histidine kinase activity
CLJU_RS02345	COG0037	tRNA processing
CLJU_RS02360	COG3773	Cell wall hydrolase
CLJU_RS02380	COG2340	Cysteine-rich secretory protein family
CLJU_RS02395	COG1910	domain protein
CLJU_RS02400	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
CLJU_RS02410	COG0347	Belongs to the P(II) protein family
CLJU_RS02455	COG0745	RESPONSE REGULATOR receiver
CLJU_RS02460	COG5002	protein histidine kinase activity
CLJU_RS02470	COG1131	(ABC) transporter
CLJU_RS02520	COG3944	biosynthesis protein
CLJU_RS02530	COG0489	protein tyrosine kinase activity
CLJU_RS02555	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CLJU_RS02560	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS02590	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS02610	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CLJU_RS02610	COG0662	Cupin 2, conserved barrel domain protein
CLJU_RS02625	COG1091	dTDP-4-dehydrorhamnose reductase activity
CLJU_RS02645	COG4372	Transposase
CLJU_RS02660	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CLJU_RS02695	COG1086	Polysaccharide biosynthesis protein
CLJU_RS02700	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLJU_RS02705	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
CLJU_RS02710	COG2089	acid synthase
CLJU_RS02725	COG0662	Cupin 2, conserved barrel domain protein
CLJU_RS02725	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CLJU_RS02740	COG1091	dTDP-4-dehydrorhamnose reductase activity
CLJU_RS02755	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CLJU_RS02760	COG1285	pathogenesis
CLJU_RS02770	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLJU_RS02860	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLJU_RS02865	COG1120	ATPase activity
CLJU_RS02870	COG1971	Probably functions as a manganese efflux pump
CLJU_RS02890	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLJU_RS02950	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CLJU_RS02955	COG4443	Transcriptional Coactivator p15 (PC4)
CLJU_RS02960	COG0768	penicillin binding
CLJU_RS02965	COG0840	transmembrane signaling receptor activity
CLJU_RS02965	COG3290	protein histidine kinase activity
CLJU_RS02970	COG0793	Belongs to the peptidase S41A family
CLJU_RS02970	COG3409	Peptidoglycan-binding domain 1 protein
CLJU_RS02985	COG0735	belongs to the Fur family
CLJU_RS03000	COG0457	Tetratricopeptide repeat
CLJU_RS03000	COG0705	Rhomboid family
CLJU_RS03005	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLJU_RS03020	COG1396	sequence-specific DNA binding
CLJU_RS03030	COG0542	response to heat
CLJU_RS03035	COG0726	polysaccharide deacetylase
CLJU_RS03040	COG3442	glutamine amidotransferase
CLJU_RS03050	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CLJU_RS03080	COG1473	amidohydrolase
CLJU_RS03085	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLJU_RS03090	COG2011	ABC-type metal ion transport system permease component
CLJU_RS03095	COG1464	Belongs to the NlpA lipoprotein family
CLJU_RS03110	COG0697	spore germination
CLJU_RS03115	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CLJU_RS03120	COG0302	gtp cyclohydrolase
CLJU_RS03125	COG1418	mRNA catabolic process
CLJU_RS03130	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLJU_RS03130	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CLJU_RS03135	COG0714	Associated with various cellular activities
CLJU_RS03155	COG3552	Protein containing von Willebrand factor type A (VWA) domain
CLJU_RS03195	COG2205	protein histidine kinase activity
CLJU_RS03200	COG0745	RESPONSE REGULATOR receiver
CLJU_RS03235	COG0697	spore germination
CLJU_RS03240	COG0658	competence protein
CLJU_RS03240	COG2333	competence protein COMEC
CLJU_RS03250	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CLJU_RS03255	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CLJU_RS03260	COG0473	3-isopropylmalate dehydrogenase activity
CLJU_RS03265	COG2873	o-acetylhomoserine
CLJU_RS03270	COG1410	methionine synthase
CLJU_RS03270	COG0646	methionine synthase
CLJU_RS03280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLJU_RS03285	COG0765	amino acid transport
CLJU_RS03295	COG0137	argininosuccinate synthase activity
CLJU_RS03300	COG0165	Argininosuccinate lyase
CLJU_RS03305	COG2155	Conserved Protein
CLJU_RS03310	COG1522	sequence-specific DNA binding
CLJU_RS03315	COG0017	Asparaginyl-tRNA synthetase
CLJU_RS03325	COG2188	Transcriptional regulator
CLJU_RS03330	COG3608	succinylglutamate desuccinylase aspartoacylase
CLJU_RS03330	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CLJU_RS03360	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS03360	COG0297	glycogen (starch) synthase activity
CLJU_RS03400	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLJU_RS03400	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CLJU_RS03410	COG0330	HflC and HflK could
CLJU_RS03415	COG0745	RESPONSE REGULATOR receiver
CLJU_RS03420	COG5002	protein histidine kinase activity
CLJU_RS03435	COG3383	formate dehydrogenase (NAD+) activity
CLJU_RS03440	COG3383	formate dehydrogenase (NAD+) activity
CLJU_RS03455	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CLJU_RS03475	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS03485	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS03495	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CLJU_RS03500	COG0840	transmembrane signaling receptor activity
CLJU_RS03505	COG0531	amino acid
CLJU_RS03515	COG4492	Belongs to the UPF0735 family
CLJU_RS03520	COG0460	homoserine dehydrogenase
CLJU_RS03525	COG0083	homoserine kinase activity
CLJU_RS03545	COG0424	maF-like protein
CLJU_RS03550	COG2003	Belongs to the UPF0758 family
CLJU_RS03555	COG1077	Cell shape determining protein MreB Mrl
CLJU_RS03570	COG0768	penicillin binding
CLJU_RS03575	COG0850	regulation of cytokinetic process
CLJU_RS03580	COG2894	cell division
CLJU_RS03585	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CLJU_RS03590	COG0772	Belongs to the SEDS family
CLJU_RS03595	COG1803	Methylglyoxal synthase
CLJU_RS03605	COG1994	Peptidase M50
CLJU_RS03620	COG1530	ribonuclease E activity
CLJU_RS03625	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CLJU_RS03635	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CLJU_RS03645	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CLJU_RS03650	COG1713	HD superfamily hydrolase involved in NAD metabolism
CLJU_RS03655	COG0251	oxidation-reduction process
CLJU_RS03660	COG0564	pseudouridine synthase activity
CLJU_RS03665	COG1686	Belongs to the peptidase S11 family
CLJU_RS03675	COG0709	Synthesizes selenophosphate from selenide and ATP
CLJU_RS03700	COG5012	cobalamin binding
CLJU_RS03710	COG2871	sodium ion transport
CLJU_RS03725	COG5012	cobalamin binding
CLJU_RS03740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLJU_RS03755	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLJU_RS03780	COG1136	(ABC) transporter
CLJU_RS03795	COG5002	protein histidine kinase activity
CLJU_RS03795	COG3850	Histidine kinase
CLJU_RS03805	COG1151	hydroxylamine reductase activity
CLJU_RS03810	COG0745	RESPONSE REGULATOR receiver
CLJU_RS03825	COG1136	(ABC) transporter
CLJU_RS03835	COG2205	protein histidine kinase activity
CLJU_RS03855	COG3850	Histidine kinase
CLJU_RS03855	COG5002	protein histidine kinase activity
CLJU_RS03865	COG0730	response to heat
CLJU_RS03870	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLJU_RS03880	COG1466	dna polymerase III delta subunit
CLJU_RS03885	COG0268	Binds directly to 16S ribosomal RNA
CLJU_RS03905	COG0481	GTPase activity
CLJU_RS03910	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLJU_RS03920	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CLJU_RS03925	COG0443	Heat shock 70 kDa protein
CLJU_RS03930	COG0484	heat shock protein binding
CLJU_RS03935	COG2264	protein methyltransferase activity
CLJU_RS03940	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CLJU_RS03945	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CLJU_RS03950	COG0537	adenosine 5'-monophosphoramidase activity
CLJU_RS03955	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CLJU_RS03975	COG1480	7TM receptor with intracellular HD hydrolase
CLJU_RS03980	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CLJU_RS03985	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CLJU_RS03990	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CLJU_RS03995	COG1381	Involved in DNA repair and RecF pathway recombination
CLJU_RS04005	COG0517	IMP dehydrogenase activity
CLJU_RS04010	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLJU_RS04010	COG0574	Belongs to the PEP-utilizing enzyme family
CLJU_RS04040	COG3642	lipopolysaccharide core region biosynthetic process
CLJU_RS04045	COG0358	DNA primase activity
CLJU_RS04050	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CLJU_RS04060	COG2384	SAM-dependent methyltransferase
CLJU_RS04065	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLJU_RS04100	COG1113	amino acid transport
CLJU_RS04120	COG3527	Alpha-acetolactate decarboxylase
CLJU_RS04125	COG0488	(ABC) transporter
CLJU_RS04135	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CLJU_RS04145	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLJU_RS04155	COG0534	Mate efflux family protein
CLJU_RS04170	COG2252	PERMEase
CLJU_RS04175	COG0697	spore germination
CLJU_RS04190	COG0531	amino acid
CLJU_RS04205	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CLJU_RS04210	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CLJU_RS04215	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLJU_RS04220	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CLJU_RS04225	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CLJU_RS04230	COG0138	bifunctional purine biosynthesis protein purh
CLJU_RS04235	COG0151	Belongs to the GarS family
CLJU_RS04240	COG5434	Belongs to the glycosyl hydrolase 28 family
CLJU_RS04240	COG4632	Exopolysaccharide biosynthesis protein
CLJU_RS04250	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLJU_RS04275	COG1053	succinate dehydrogenase
CLJU_RS04305	COG0531	amino acid
CLJU_RS04310	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLJU_RS04325	COG1368	sulfuric ester hydrolase activity
CLJU_RS04330	COG0084	hydrolase, TatD family'
CLJU_RS04335	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLJU_RS04340	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLJU_RS04345	COG1116	anion transmembrane transporter activity
CLJU_RS04355	COG0745	RESPONSE REGULATOR receiver
CLJU_RS04360	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLJU_RS04365	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS04385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLJU_RS04395	COG1132	(ABC) transporter
CLJU_RS04400	COG1132	(ABC) transporter
CLJU_RS04405	COG3383	formate dehydrogenase (NAD+) activity
CLJU_RS04420	COG0475	glutathione-regulated potassium exporter activity
CLJU_RS04440	COG4086	secreted protein
CLJU_RS04445	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CLJU_RS04460	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CLJU_RS04465	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CLJU_RS04475	COG0473	3-isopropylmalate dehydrogenase activity
CLJU_RS04480	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CLJU_RS04490	COG1151	hydroxylamine reductase activity
CLJU_RS04500	COG0598	Magnesium transport protein CorA
CLJU_RS04505	COG1131	(ABC) transporter
CLJU_RS04530	COG0187	DNA topoisomerase II activity
CLJU_RS04535	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLJU_RS04540	COG0095	Lipoate-protein ligase
CLJU_RS04550	COG0612	Peptidase, M16
CLJU_RS04555	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CLJU_RS04555	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CLJU_RS04560	COG1438	arginine binding
CLJU_RS04565	COG0531	amino acid
CLJU_RS04575	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLJU_RS04590	COG0840	transmembrane signaling receptor activity
CLJU_RS04595	COG1378	Sugar-specific transcriptional regulator TrmB
CLJU_RS04600	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CLJU_RS04630	COG0835	chemotaxis
CLJU_RS04635	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CLJU_RS04640	COG2201	protein-glutamate methylesterase activity
CLJU_RS04645	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CLJU_RS04650	COG0643	Histidine kinase
CLJU_RS04650	COG2198	Histidine kinase
CLJU_RS04655	COG1776	CheC inhibitor of MCP methylation
CLJU_RS04660	COG2201	protein-glutamate methylesterase activity
CLJU_RS04665	COG0835	chemotaxis
CLJU_RS04670	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLJU_RS04675	COG1776	CheC inhibitor of MCP methylation
CLJU_RS04675	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLJU_RS04690	COG1256	bacterial-type flagellum assembly
CLJU_RS04690	COG4786	Flagellar basal body rod
CLJU_RS04700	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CLJU_RS04705	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CLJU_RS04710	COG1334	flagellar protein FlaG
CLJU_RS04720	COG1516	flagellar protein fliS
CLJU_RS04740	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CLJU_RS04755	COG0463	Glycosyl transferase, family 2
CLJU_RS04780	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CLJU_RS04815	COG4372	Transposase
CLJU_RS04820	COG4974	Belongs to the 'phage' integrase family
CLJU_RS04825	COG4974	Belongs to the 'phage' integrase family
CLJU_RS04870	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
CLJU_RS04880	COG0463	Glycosyl transferase, family 2
CLJU_RS04880	COG0457	Tetratricopeptide repeat
CLJU_RS04905	COG1088	dTDP-glucose 4,6-dehydratase activity
CLJU_RS04935	COG2247	cell wall binding repeat
CLJU_RS04935	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLJU_RS04950	COG0460	homoserine dehydrogenase
CLJU_RS04975	COG0756	dUTP diphosphatase activity
CLJU_RS04985	COG0840	transmembrane signaling receptor activity
CLJU_RS04995	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CLJU_RS05005	COG1558	bacterial-type flagellum-dependent cell motility
CLJU_RS05010	COG1677	Flagellar hook-basal body complex protein FliE
CLJU_RS05015	COG1766	The M ring may be actively involved in energy transduction
CLJU_RS05020	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CLJU_RS05030	COG1157	protein secretion by the type III secretion system
CLJU_RS05045	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CLJU_RS05055	COG4786	Flagellar basal body rod
CLJU_RS05060	COG1582	Flagellar protein (FlbD)
CLJU_RS05065	COG1580	Controls the rotational direction of flagella during chemotaxis
CLJU_RS05075	COG1338	Plays a role in the flagellum-specific transport system
CLJU_RS05085	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLJU_RS05090	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CLJU_RS05095	COG1419	protein localization to endoplasmic reticulum
CLJU_RS05100	COG0455	bacterial-type flagellum organization
CLJU_RS05110	COG1191	sigma factor activity
CLJU_RS05120	COG4786	Flagellar basal body rod
CLJU_RS05140	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CLJU_RS05150	COG1067	ATP-dependent peptidase activity
CLJU_RS05160	COG1309	transcriptional regulator
CLJU_RS05165	COG0012	GTP binding
CLJU_RS05170	COG2001	Belongs to the MraZ family
CLJU_RS05175	COG0275	rRNA processing
CLJU_RS05185	COG0768	penicillin binding
CLJU_RS05195	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CLJU_RS05200	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLJU_RS05205	COG0772	Belongs to the SEDS family
CLJU_RS05210	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CLJU_RS05220	COG3856	small basic protein
CLJU_RS05230	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CLJU_RS05245	COG2302	S4 RNA-binding domain
CLJU_RS05250	COG3599	regulation of cell shape
CLJU_RS05255	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CLJU_RS05260	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CLJU_RS05265	COG0564	pseudouridine synthase activity
CLJU_RS05270	COG2233	PERMEase
CLJU_RS05275	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CLJU_RS05330	COG3290	protein histidine kinase activity
CLJU_RS05340	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CLJU_RS05390	COG0006	proline dipeptidase activity
CLJU_RS05395	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CLJU_RS05405	COG3854	ATPases associated with a variety of cellular activities
CLJU_RS05450	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLJU_RS05455	COG1570	exodeoxyribonuclease VII activity
CLJU_RS05460	COG1722	exodeoxyribonuclease VII activity
CLJU_RS05470	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CLJU_RS05475	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CLJU_RS05480	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CLJU_RS05485	COG1438	arginine binding
CLJU_RS05490	COG0497	DNA recombination
CLJU_RS05495	COG0750	zinc metalloprotease
CLJU_RS05505	COG0494	nUDIX hydrolase
CLJU_RS05520	COG4974	Belongs to the 'phage' integrase family
CLJU_RS05525	COG1686	Belongs to the peptidase S11 family
CLJU_RS05530	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CLJU_RS05530	COG3620	sequence-specific DNA binding
CLJU_RS05530	COG0617	tRNA 3'-terminal CCA addition
CLJU_RS05535	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CLJU_RS05545	COG3874	Sporulation protein YtfJ
CLJU_RS05555	COG1686	Belongs to the peptidase S11 family
CLJU_RS05570	COG4656	Part of a membrane complex involved in electron transport
CLJU_RS05575	COG4658	electron transport chain
CLJU_RS05580	COG4659	FMN binding
CLJU_RS05585	COG4660	Part of a membrane complex involved in electron transport
CLJU_RS05590	COG4657	Part of a membrane complex involved in electron transport
CLJU_RS05595	COG1148	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS05595	COG2878	Part of a membrane complex involved in electron transport
CLJU_RS05620	COG0561	phosphatase activity
CLJU_RS05625	COG1937	Protein conserved in bacteria
CLJU_RS05635	COG2966	Psort location CytoplasmicMembrane, score
CLJU_RS05640	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CLJU_RS05650	COG0789	Transcriptional regulator
CLJU_RS05665	COG1737	Transcriptional regulator
CLJU_RS05670	COG1063	alcohol dehydrogenase
CLJU_RS05680	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLJU_RS05685	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CLJU_RS05690	COG2610	gluconate transmembrane transporter activity
CLJU_RS05700	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLJU_RS05705	COG0800	Aldolase
CLJU_RS05710	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CLJU_RS05720	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CLJU_RS05725	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CLJU_RS05730	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CLJU_RS05735	COG0131	Imidazoleglycerol-phosphate dehydratase
CLJU_RS05740	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CLJU_RS05755	COG0107	imidazoleglycerol-phosphate synthase activity
CLJU_RS05760	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CLJU_RS05795	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CLJU_RS05805	COG1882	Formate acetyltransferase
CLJU_RS05815	COG2201	protein-glutamate methylesterase activity
CLJU_RS05820	COG2972	Histidine kinase
CLJU_RS05855	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CLJU_RS05870	COG1012	belongs to the aldehyde dehydrogenase family
CLJU_RS05870	COG1454	alcohol dehydrogenase
CLJU_RS05875	COG4869	propanediol catabolic process
CLJU_RS05890	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CLJU_RS05895	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLJU_RS05900	COG1396	sequence-specific DNA binding
CLJU_RS05905	COG0747	negative chemotaxis
CLJU_RS05910	COG0601	transmembrane transport
CLJU_RS05915	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLJU_RS05920	COG0444	Belongs to the ABC transporter superfamily
CLJU_RS05925	COG4608	Belongs to the ABC transporter superfamily
CLJU_RS05935	COG1959	2 iron, 2 sulfur cluster binding
CLJU_RS05945	COG0822	iron-sulfur transferase activity
CLJU_RS05955	COG0628	permease
CLJU_RS05960	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CLJU_RS05965	COG4472	Bacterial protein of unknown function (DUF965)
CLJU_RS05970	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CLJU_RS05980	COG0735	belongs to the Fur family
CLJU_RS05985	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CLJU_RS05995	COG1217	gtp-binding protein TYPA
CLJU_RS06000	COG4122	O-methyltransferase activity
CLJU_RS06005	COG0826	peptidase U32
CLJU_RS06010	COG0768	penicillin binding
CLJU_RS06030	COG0849	cell division
CLJU_RS06035	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLJU_RS06045	COG1191	sigma factor activity
CLJU_RS06050	COG1191	sigma factor activity
CLJU_RS06055	COG1873	PFAM PRC-barrel domain
CLJU_RS06060	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CLJU_RS06065	COG1496	oxidoreductase activity
CLJU_RS06070	COG0745	RESPONSE REGULATOR receiver
CLJU_RS06075	COG5002	protein histidine kinase activity
CLJU_RS06080	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CLJU_RS06085	COG0573	inorganic phosphate transmembrane transporter activity
CLJU_RS06090	COG0581	inorganic phosphate transmembrane transporter activity
CLJU_RS06095	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLJU_RS06100	COG0704	Plays a role in the regulation of phosphate uptake
CLJU_RS06105	COG1392	Phosphate transport regulator
CLJU_RS06120	COG1160	GTP binding
CLJU_RS06130	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CLJU_RS06135	COG1561	YicC-like family, N-terminal region
CLJU_RS06140	COG2052	Domain of unknown function (DUF370)
CLJU_RS06150	COG1758	RNA polymerase activity
CLJU_RS06155	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLJU_RS06160	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLJU_RS06165	COG0242	peptide deformylase activity
CLJU_RS06170	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CLJU_RS06175	COG2738	Putative neutral zinc metallopeptidase
CLJU_RS06180	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CLJU_RS06180	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CLJU_RS06185	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CLJU_RS06190	COG0631	protein serine/threonine phosphatase activity
CLJU_RS06195	COG0515	serine threonine protein kinase
CLJU_RS06195	COG2815	serine threonine protein kinase
CLJU_RS06200	COG1162	GTPase activity
CLJU_RS06205	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CLJU_RS06215	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CLJU_RS06220	COG1302	Protein conserved in bacteria
CLJU_RS06225	COG1461	Dihydroxyacetone kinase
CLJU_RS06230	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLJU_RS06235	COG0742	ribosomal rna small subunit methyltransferase
CLJU_RS06240	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CLJU_RS06255	COG1323	Belongs to the UPF0348 family
CLJU_RS06260	COG0280	phosphate acetyltransferase
CLJU_RS06265	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CLJU_RS06275	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CLJU_RS06280	COG0416	fatty acid biosynthetic process
CLJU_RS06285	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CLJU_RS06290	COG0571	ribonuclease III activity
CLJU_RS06305	COG0552	protein localization to endoplasmic reticulum
CLJU_RS06310	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
CLJU_RS06315	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLJU_RS06320	COG0228	four-way junction DNA binding
CLJU_RS06330	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CLJU_RS06335	COG0336	Belongs to the RNA methyltransferase TrmD family
CLJU_RS06340	COG0335	large ribosomal subunit rRNA binding
CLJU_RS06345	COG0681	Belongs to the peptidase S26 family
CLJU_RS06355	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CLJU_RS06360	COG0792	nuclease activity
CLJU_RS06370	COG0606	chelatase, subunit chli
CLJU_RS06375	COG0758	DNA mediated transformation
CLJU_RS06380	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLJU_RS06385	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
CLJU_RS06390	COG0052	Belongs to the universal ribosomal protein uS2 family
CLJU_RS06395	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CLJU_RS06400	COG0528	UMP kinase activity
CLJU_RS06405	COG0233	cytoplasmic translational termination
CLJU_RS06415	COG4589	Belongs to the CDS family
CLJU_RS06420	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CLJU_RS06425	COG0750	zinc metalloprotease
CLJU_RS06430	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CLJU_RS06435	COG0779	Required for maturation of 30S ribosomal subunits
CLJU_RS06440	COG0195	Participates in both transcription termination and antitermination
CLJU_RS06445	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CLJU_RS06455	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CLJU_RS06460	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CLJU_RS06470	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CLJU_RS06475	COG0196	riboflavin kinase activity
CLJU_RS06480	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CLJU_RS06485	COG1185	polyribonucleotide nucleotidyltransferase activity
CLJU_RS06490	COG0612	Peptidase, M16
CLJU_RS06500	COG0740	serine-type endopeptidase activity
CLJU_RS06505	COG1674	ftsk spoiiie
CLJU_RS06510	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CLJU_RS06515	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLJU_RS06520	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CLJU_RS06530	COG2359	stage V sporulation protein S
CLJU_RS06545	COG2076	Multidrug Resistance protein
CLJU_RS06555	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLJU_RS06560	COG2155	Conserved Protein
CLJU_RS06565	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CLJU_RS06575	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CLJU_RS06585	COG1686	Belongs to the peptidase S11 family
CLJU_RS06595	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CLJU_RS06605	COG0745	RESPONSE REGULATOR receiver
CLJU_RS06610	COG0840	transmembrane signaling receptor activity
CLJU_RS06630	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
CLJU_RS06650	COG2207	Transcriptional regulator
CLJU_RS06650	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS06675	COG1414	Transcriptional regulator
CLJU_RS06680	COG0800	Aldolase
CLJU_RS06685	COG2271	Major facilitator Superfamily
CLJU_RS06690	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CLJU_RS06695	COG0242	peptide deformylase activity
CLJU_RS06700	COG2078	PFAM AMMECR1 domain protein
CLJU_RS06700	COG3885	ferrous iron binding
CLJU_RS06710	COG1396	sequence-specific DNA binding
CLJU_RS06745	COG0628	permease
CLJU_RS06755	COG0840	transmembrane signaling receptor activity
CLJU_RS06760	COG2205	protein histidine kinase activity
CLJU_RS06765	COG0745	RESPONSE REGULATOR receiver
CLJU_RS06785	COG3279	Response regulator of the LytR AlgR family
CLJU_RS06790	COG0840	transmembrane signaling receptor activity
CLJU_RS06805	COG0840	transmembrane signaling receptor activity
CLJU_RS06815	COG2086	electron transfer activity
CLJU_RS06820	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLJU_RS06845	COG1297	OPT oligopeptide transporter protein
CLJU_RS06855	COG1918	ferrous iron import across plasma membrane
CLJU_RS06855	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CLJU_RS06865	COG1918	ferrous iron import across plasma membrane
CLJU_RS06865	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CLJU_RS06895	COG3655	Transcriptional regulator
CLJU_RS06900	COG1032	radical SAM domain protein
CLJU_RS06920	COG0840	transmembrane signaling receptor activity
CLJU_RS06925	COG0789	Transcriptional regulator
CLJU_RS06930	COG1846	Transcriptional regulator
CLJU_RS06945	COG0300	oxidoreductase activity
CLJU_RS06950	COG0745	RESPONSE REGULATOR receiver
CLJU_RS06955	COG0642	Histidine kinase
CLJU_RS06970	COG0789	Transcriptional regulator
CLJU_RS06985	COG1136	(ABC) transporter
CLJU_RS06990	COG0577	efflux transmembrane transporter activity
CLJU_RS07005	COG0436	Aminotransferase
CLJU_RS07020	COG3973	AAA domain
CLJU_RS07025	COG0494	nUDIX hydrolase
CLJU_RS07030	COG1309	transcriptional regulator
CLJU_RS07035	COG3848	Pyruvate phosphate dikinase
CLJU_RS07035	COG0574	Belongs to the PEP-utilizing enzyme family
CLJU_RS07045	COG1686	Belongs to the peptidase S11 family
CLJU_RS07060	COG0745	RESPONSE REGULATOR receiver
CLJU_RS07065	COG0642	Histidine kinase
CLJU_RS07075	COG1136	(ABC) transporter
CLJU_RS07080	COG0577	efflux transmembrane transporter activity
CLJU_RS07135	COG1104	cysteine desulfurase activity
CLJU_RS07145	COG0419	ATPase involved in DNA repair
CLJU_RS07175	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CLJU_RS07185	COG1716	ATPase activity
CLJU_RS07185	COG5001	Diguanylate cyclase
CLJU_RS07190	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CLJU_RS07195	COG2720	vancomycin resistance protein
CLJU_RS07225	COG0596	Alpha beta hydrolase
CLJU_RS07240	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CLJU_RS07245	COG4974	Belongs to the 'phage' integrase family
CLJU_RS07250	COG5001	Diguanylate cyclase
CLJU_RS07250	COG4251	negative regulation of phosphorylation
CLJU_RS07250	COG2203	Gaf domain
CLJU_RS07250	COG3706	GGDEF domain
CLJU_RS07255	COG0840	transmembrane signaling receptor activity
CLJU_RS07290	COG0789	Transcriptional regulator
CLJU_RS07305	COG1070	Carbohydrate kinase
CLJU_RS07355	COG1454	alcohol dehydrogenase
CLJU_RS07360	COG2508	Transcriptional regulator
CLJU_RS07375	COG1193	negative regulation of DNA recombination
CLJU_RS07380	COG1363	Peptidase, m42
CLJU_RS07385	COG1668	transmembrane transport
CLJU_RS07390	COG4555	ABC transporter
CLJU_RS07395	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLJU_RS07425	COG1401	restriction endodeoxyribonuclease activity
CLJU_RS07435	COG1132	(ABC) transporter
CLJU_RS07440	COG1132	(ABC) transporter
CLJU_RS07455	COG2378	regulation of single-species biofilm formation
CLJU_RS07460	COG3708	Transcriptional regulator
CLJU_RS07470	COG2207	Transcriptional regulator
CLJU_RS07470	COG1917	Cupin 2, conserved barrel domain protein
CLJU_RS07480	COG0778	Nitroreductase
CLJU_RS07485	COG3257	ureidoglycine aminohydrolase activity
CLJU_RS07500	COG0549	Belongs to the carbamate kinase family
CLJU_RS07505	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CLJU_RS07510	COG1953	Uracil, thiamine, allantoin
CLJU_RS07515	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CLJU_RS07525	COG1953	Uracil, thiamine, allantoin
CLJU_RS07570	COG1846	Transcriptional regulator
CLJU_RS07575	COG0745	RESPONSE REGULATOR receiver
CLJU_RS07580	COG5002	protein histidine kinase activity
CLJU_RS07590	COG1136	(ABC) transporter
CLJU_RS07595	COG1136	(ABC) transporter
CLJU_RS07595	COG0577	efflux transmembrane transporter activity
CLJU_RS07600	COG0789	Transcriptional regulator
CLJU_RS07605	COG5278	phosphoserine phosphatase activity
CLJU_RS07605	COG0840	transmembrane signaling receptor activity
CLJU_RS07615	COG0243	molybdopterin cofactor binding
CLJU_RS07625	COG3875	lactate racemase activity
CLJU_RS07630	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CLJU_RS07635	COG1691	(AIR) carboxylase
CLJU_RS07640	COG0697	spore germination
CLJU_RS07645	COG0531	amino acid
CLJU_RS07680	COG0798	PFAM Bile acid sodium symporter
CLJU_RS07695	COG1191	sigma factor activity
CLJU_RS07705	COG1876	peptidase activity
CLJU_RS07730	COG1349	DNA-binding transcription factor activity
CLJU_RS07735	COG2814	Major facilitator Superfamily
CLJU_RS07745	COG0745	RESPONSE REGULATOR receiver
CLJU_RS07750	COG5002	protein histidine kinase activity
CLJU_RS07765	COG4632	Exopolysaccharide biosynthesis protein
CLJU_RS07765	COG5434	Belongs to the glycosyl hydrolase 28 family
CLJU_RS07800	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLJU_RS07805	COG1968	undecaprenyl-diphosphatase activity
CLJU_RS07810	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CLJU_RS07820	COG0586	Pfam SNARE associated Golgi protein
CLJU_RS07825	COG0671	phosphoesterase, PA-phosphatase related
CLJU_RS07835	COG2239	Acts as a magnesium transporter
CLJU_RS07850	COG1113	amino acid transport
CLJU_RS07865	COG0655	NAD(P)H dehydrogenase (quinone) activity
CLJU_RS07880	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CLJU_RS07880	COG0512	Glutamine amidotransferase of anthranilate synthase
CLJU_RS07890	COG0134	indole-3-glycerol-phosphate synthase activity
CLJU_RS07895	COG0135	phosphoribosylanthranilate isomerase activity
CLJU_RS07900	COG0133	tryptophan synthase activity
CLJU_RS07905	COG0159	tryptophan synthase activity
CLJU_RS07910	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CLJU_RS07925	COG0583	DNA-binding transcription factor activity
CLJU_RS07935	COG1595	DNA-templated transcription, initiation
CLJU_RS07945	COG1695	Transcriptional regulator
CLJU_RS07965	COG1846	Transcriptional regulator
CLJU_RS07970	COG0534	Mate efflux family protein
CLJU_RS07975	COG0242	peptide deformylase activity
CLJU_RS07980	COG0735	belongs to the Fur family
CLJU_RS07985	COG0840	transmembrane signaling receptor activity
CLJU_RS08010	COG2807	transmembrane transport
CLJU_RS08035	COG2323	membrane
CLJU_RS08045	COG4948	Mandelate Racemase Muconate Lactonizing
CLJU_RS08060	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CLJU_RS08070	COG0531	amino acid
CLJU_RS08085	COG0697	spore germination
CLJU_RS08295	COG5492	domain, Protein
CLJU_RS08295	COG4932	domain protein
CLJU_RS08310	COG0210	DNA helicase
CLJU_RS08325	COG0671	phosphoesterase, PA-phosphatase related
CLJU_RS08350	COG1592	Rubrerythrin
CLJU_RS08355	COG0772	Belongs to the SEDS family
CLJU_RS08365	COG2323	membrane
CLJU_RS08375	COG0667	Aldo Keto reductase
CLJU_RS08390	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS08400	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS08405	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLJU_RS08415	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS08420	COG1120	ATPase activity
CLJU_RS08430	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS08445	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS08450	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CLJU_RS08455	COG1116	anion transmembrane transporter activity
CLJU_RS08470	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS08480	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS08500	COG0745	RESPONSE REGULATOR receiver
CLJU_RS08505	COG5002	protein histidine kinase activity
CLJU_RS08510	COG0849	cell division
CLJU_RS08515	COG1473	amidohydrolase
CLJU_RS08525	COG2244	polysaccharide biosynthetic process
CLJU_RS08530	COG0067	glutamate synthase
CLJU_RS08530	COG0069	glutamate synthase activity
CLJU_RS08530	COG0070	glutamate synthase
CLJU_RS08540	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLJU_RS08545	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CLJU_RS08565	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CLJU_RS08580	COG0348	domain, Protein
CLJU_RS08580	COG3901	Regulator of nitric oxide reductase transcription
CLJU_RS08590	COG0596	Alpha beta hydrolase
CLJU_RS08595	COG0840	transmembrane signaling receptor activity
CLJU_RS08600	COG3547	Transposase (IS116 IS110 IS902 family)
CLJU_RS08620	COG2076	Multidrug Resistance protein
CLJU_RS08625	COG0583	DNA-binding transcription factor activity
CLJU_RS08655	COG3093	addiction module antidote protein HigA
CLJU_RS08660	COG3706	GGDEF domain
CLJU_RS08665	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
CLJU_RS08690	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLJU_RS08695	COG0583	DNA-binding transcription factor activity
CLJU_RS08700	COG0367	asparagine synthase
CLJU_RS08710	COG0784	Response regulator, receiver
CLJU_RS08725	COG1733	regulation of RNA biosynthetic process
CLJU_RS08730	COG0384	phenazine biosynthesis protein PhzF
CLJU_RS08750	COG0561	phosphatase activity
CLJU_RS08755	COG0656	L-ascorbic acid biosynthetic process
CLJU_RS08765	COG0242	peptide deformylase activity
CLJU_RS08770	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS08775	COG0745	RESPONSE REGULATOR receiver
CLJU_RS08780	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CLJU_RS08795	COG1113	amino acid transport
CLJU_RS08800	COG1151	hydroxylamine reductase activity
CLJU_RS08815	COG3608	succinylglutamate desuccinylase aspartoacylase
CLJU_RS08815	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CLJU_RS08825	COG2203	Gaf domain
CLJU_RS08825	COG2199	diguanylate cyclase activity
CLJU_RS08830	COG4978	Transcriptional regulator
CLJU_RS08830	COG0789	Transcriptional regulator
CLJU_RS08840	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLJU_RS08850	COG1733	regulation of RNA biosynthetic process
CLJU_RS08860	COG1073	alpha beta
CLJU_RS08865	COG5278	phosphoserine phosphatase activity
CLJU_RS08865	COG0840	transmembrane signaling receptor activity
CLJU_RS08870	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CLJU_RS08885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLJU_RS08890	COG1136	(ABC) transporter
CLJU_RS08895	COG0577	efflux transmembrane transporter activity
CLJU_RS08895	COG1136	(ABC) transporter
CLJU_RS08900	COG2390	Transcriptional regulator
CLJU_RS08905	COG0295	cytidine deaminase activity
CLJU_RS08910	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CLJU_RS08915	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLJU_RS08920	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CLJU_RS08925	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CLJU_RS08965	COG1070	Carbohydrate kinase
CLJU_RS08990	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLJU_RS08995	COG1116	anion transmembrane transporter activity
CLJU_RS09000	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLJU_RS09010	COG1131	(ABC) transporter
CLJU_RS09065	COG0697	spore germination
CLJU_RS09085	COG0840	transmembrane signaling receptor activity
CLJU_RS09110	COG1053	succinate dehydrogenase
CLJU_RS09130	COG5001	Diguanylate cyclase
CLJU_RS09130	COG3300	MHYT domain
CLJU_RS09135	COG3546	catalase activity
CLJU_RS09145	COG1331	Highly conserved protein containing a thioredoxin domain
CLJU_RS09160	COG0840	transmembrane signaling receptor activity
CLJU_RS09200	COG1388	LysM domain
CLJU_RS09200	COG3858	chitin binding
CLJU_RS09240	COG2201	protein-glutamate methylesterase activity
CLJU_RS09255	COG0840	transmembrane signaling receptor activity
CLJU_RS09260	COG1846	Transcriptional regulator
CLJU_RS09270	COG1132	(ABC) transporter
CLJU_RS09285	COG2720	vancomycin resistance protein
CLJU_RS09305	COG0463	Glycosyl transferase, family 2
CLJU_RS09310	COG0457	Tetratricopeptide repeat
CLJU_RS09310	COG0463	Glycosyl transferase, family 2
CLJU_RS09320	COG2720	vancomycin resistance protein
CLJU_RS09325	COG0488	(ABC) transporter
CLJU_RS09330	COG0405	Gamma-glutamyltransferase
CLJU_RS09340	COG1164	Oligoendopeptidase f
CLJU_RS09365	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS09370	COG5012	cobalamin binding
CLJU_RS09375	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS09390	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLJU_RS09405	COG2801	Transposase and inactivated derivatives
CLJU_RS09415	COG1953	Uracil, thiamine, allantoin
CLJU_RS09420	COG0402	S-adenosylhomocysteine deaminase activity
CLJU_RS09430	COG3585	molybdate ion transport
CLJU_RS09445	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLJU_RS09450	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLJU_RS09455	COG2909	trisaccharide binding
CLJU_RS09460	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLJU_RS09475	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CLJU_RS09520	COG0697	spore germination
CLJU_RS09530	COG0745	RESPONSE REGULATOR receiver
CLJU_RS09535	COG5002	protein histidine kinase activity
CLJU_RS09545	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLJU_RS09545	COG1773	rubredoxin
CLJU_RS09550	COG1528	Iron-storage protein
CLJU_RS09555	COG1278	Cold shock
CLJU_RS09570	COG5577	PFAM Coat F domain
CLJU_RS09575	COG1063	alcohol dehydrogenase
CLJU_RS09585	COG5577	PFAM Coat F domain
CLJU_RS09590	COG0655	NAD(P)H dehydrogenase (quinone) activity
CLJU_RS09595	COG1278	Cold shock
CLJU_RS09600	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS09605	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS09630	COG1131	(ABC) transporter
CLJU_RS09640	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS09650	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS09660	COG1360	Flagellar Motor Protein
CLJU_RS09665	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CLJU_RS09690	COG0326	Molecular chaperone. Has ATPase activity
CLJU_RS09700	COG0583	DNA-binding transcription factor activity
CLJU_RS09710	COG0745	RESPONSE REGULATOR receiver
CLJU_RS09735	COG1388	LysM domain
CLJU_RS09735	COG3858	chitin binding
CLJU_RS09740	COG3681	Belongs to the UPF0597 family
CLJU_RS09750	COG1704	LemA family
CLJU_RS09765	COG0789	Transcriptional regulator
CLJU_RS09770	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLJU_RS09785	COG2357	RelA SpoT domain protein
CLJU_RS09800	COG1028	Short-chain dehydrogenase reductase Sdr
CLJU_RS09805	COG0778	Nitroreductase
CLJU_RS09820	COG0493	'glutamate synthase
CLJU_RS09820	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS09840	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLJU_RS09845	COG1120	ATPase activity
CLJU_RS09850	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLJU_RS09855	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLJU_RS09865	COG2414	aldehyde ferredoxin oxidoreductase
CLJU_RS09890	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLJU_RS09895	COG0303	'Molybdopterin
CLJU_RS09900	COG0303	'Molybdopterin
CLJU_RS09915	COG2414	aldehyde ferredoxin oxidoreductase
CLJU_RS09925	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLJU_RS09945	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CLJU_RS09950	COG0768	penicillin binding
CLJU_RS09950	COG0768	penicillin binding
CLJU_RS09965	COG0420	3'-5' exonuclease activity
CLJU_RS09970	COG0419	ATPase involved in DNA repair
CLJU_RS09975	COG2086	electron transfer activity
CLJU_RS09980	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLJU_RS09995	COG0840	transmembrane signaling receptor activity
CLJU_RS09995	COG3290	protein histidine kinase activity
CLJU_RS10005	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CLJU_RS10010	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CLJU_RS10015	COG0129	dihydroxy-acid dehydratase activity
CLJU_RS10020	COG0028	Belongs to the TPP enzyme family
CLJU_RS10025	COG0440	acetolactate synthase activity
CLJU_RS10035	COG0439	Biotin carboxylase
CLJU_RS10045	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLJU_RS10060	COG0511	ligase activity, forming carbon-carbon bonds
CLJU_RS10060	COG5016	pyruvate
CLJU_RS10065	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CLJU_RS10075	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLJU_RS10090	COG2211	Major facilitator Superfamily
CLJU_RS10105	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS10110	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLJU_RS10110	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLJU_RS10110	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLJU_RS10115	COG1105	Belongs to the carbohydrate kinase PfkB family
CLJU_RS10120	COG1349	DNA-binding transcription factor activity
CLJU_RS10185	COG5012	cobalamin binding
CLJU_RS10190	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CLJU_RS10195	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLJU_RS10200	COG0784	Response regulator, receiver
CLJU_RS10205	COG4191	Histidine kinase
CLJU_RS10215	COG0531	amino acid
CLJU_RS10235	COG1752	Esterase of the alpha-beta hydrolase superfamily
CLJU_RS10240	COG0215	cysteine-tRNA ligase activity
CLJU_RS10265	COG2323	membrane
CLJU_RS10290	COG0300	oxidoreductase activity
CLJU_RS10300	COG1924	4 iron, 4 sulfur cluster binding
CLJU_RS10315	COG4974	Belongs to the 'phage' integrase family
CLJU_RS10325	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLJU_RS10330	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CLJU_RS10340	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS10345	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS10350	COG5012	cobalamin binding
CLJU_RS10360	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CLJU_RS10365	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS10370	COG2814	Major facilitator Superfamily
CLJU_RS10380	COG0477	Major facilitator Superfamily
CLJU_RS10385	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLJU_RS10410	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CLJU_RS10415	COG1923	regulation of RNA biosynthetic process
CLJU_RS10420	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CLJU_RS10425	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CLJU_RS10430	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLJU_RS10445	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS10450	COG0436	Aminotransferase
CLJU_RS10460	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
CLJU_RS10465	COG0539	negative regulation of cytoplasmic translation
CLJU_RS10465	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CLJU_RS10470	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CLJU_RS10475	COG2081	HI0933 family
CLJU_RS10480	COG1737	Transcriptional regulator
CLJU_RS10485	COG1187	pseudouridine synthase activity
CLJU_RS10490	COG1215	transferase activity, transferring glycosyl groups
CLJU_RS10500	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLJU_RS10505	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CLJU_RS10520	COG0840	transmembrane signaling receptor activity
CLJU_RS10525	COG3404	Formiminotransferase-cyclodeaminase
CLJU_RS10530	COG0531	amino acid
CLJU_RS10540	COG1228	amidohydrolase
CLJU_RS10560	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CLJU_RS10565	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CLJU_RS10570	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CLJU_RS10575	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CLJU_RS10580	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CLJU_RS10590	COG0277	FAD linked oxidase domain protein
CLJU_RS10595	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CLJU_RS10600	COG2086	electron transfer activity
CLJU_RS10605	COG3875	lactate racemase activity
CLJU_RS10610	COG1620	l-lactate permease
CLJU_RS10615	COG2186	Transcriptional regulator
CLJU_RS10640	COG0517	IMP dehydrogenase activity
CLJU_RS10640	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CLJU_RS10650	COG0018	arginyl-trna synthetase
CLJU_RS10655	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CLJU_RS10670	COG1177	transmembrane transport
CLJU_RS10675	COG1176	ABC-type spermidine putrescine transport system, permease component I
CLJU_RS10680	COG3842	ATPase activity
CLJU_RS10705	COG0833	amino acid
CLJU_RS10710	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLJU_RS10735	COG0613	PHP domain protein
CLJU_RS10740	COG1362	aminopeptidase activity
CLJU_RS10745	COG0598	Magnesium transport protein CorA
CLJU_RS10750	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLJU_RS10755	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CLJU_RS10760	COG4224	UPF0291 protein
CLJU_RS10765	COG0010	Belongs to the arginase family
CLJU_RS10770	COG0426	domain, Protein
CLJU_RS10775	COG3973	AAA domain
CLJU_RS10780	COG0242	peptide deformylase activity
CLJU_RS10820	COG2244	polysaccharide biosynthetic process
CLJU_RS10825	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CLJU_RS10830	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CLJU_RS10830	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CLJU_RS10845	COG0840	transmembrane signaling receptor activity
CLJU_RS10850	COG0835	chemotaxis
CLJU_RS10855	COG0643	Histidine kinase
CLJU_RS10855	COG2198	Histidine kinase
CLJU_RS10860	COG2201	protein-glutamate methylesterase activity
CLJU_RS10870	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CLJU_RS10875	COG4149	molybdate abc transporter
CLJU_RS10880	COG0725	ABC transporter, periplasmic molybdate-binding protein
CLJU_RS10885	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CLJU_RS10895	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLJU_RS10900	COG0138	bifunctional purine biosynthesis protein purh
CLJU_RS10910	COG0310	cobalt ion transport
CLJU_RS11065	COG1132	(ABC) transporter
CLJU_RS11080	COG0534	Mate efflux family protein
CLJU_RS11090	COG0747	negative chemotaxis
CLJU_RS11100	COG4608	Belongs to the ABC transporter superfamily
CLJU_RS11105	COG0444	Belongs to the ABC transporter superfamily
CLJU_RS11115	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLJU_RS11120	COG0601	transmembrane transport
CLJU_RS11135	COG4608	Belongs to the ABC transporter superfamily
CLJU_RS11140	COG0444	Belongs to the ABC transporter superfamily
CLJU_RS11145	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLJU_RS11150	COG0601	transmembrane transport
CLJU_RS11165	COG2226	methyltransferase
CLJU_RS11175	COG2211	Major facilitator Superfamily
CLJU_RS11195	COG2508	Transcriptional regulator
CLJU_RS11195	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
CLJU_RS11225	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CLJU_RS11230	COG1846	Transcriptional regulator
CLJU_RS11235	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CLJU_RS11255	COG0840	transmembrane signaling receptor activity
CLJU_RS11260	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLJU_RS11270	COG0840	transmembrane signaling receptor activity
CLJU_RS11275	COG1131	(ABC) transporter
CLJU_RS11305	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLJU_RS11315	COG5564	TIM-barrel signal transduction protein
CLJU_RS11325	COG5564	TIM-barrel signal transduction protein
CLJU_RS11340	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
CLJU_RS11350	COG0409	Hydrogenase expression formation protein
CLJU_RS11360	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CLJU_RS11370	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
CLJU_RS11375	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
CLJU_RS11380	COG0697	spore germination
CLJU_RS11385	COG1396	sequence-specific DNA binding
CLJU_RS11390	COG1335	isochorismatase
CLJU_RS11415	COG1388	LysM domain
CLJU_RS11415	COG3584	3D domain protein
CLJU_RS11420	COG4187	Peptidase family M20/M25/M40
CLJU_RS11425	COG1063	alcohol dehydrogenase
CLJU_RS11440	COG4555	ABC transporter
CLJU_RS11480	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLJU_RS11485	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CLJU_RS11495	COG0482	sulfurtransferase activity
CLJU_RS11515	COG0028	Belongs to the TPP enzyme family
CLJU_RS11520	COG0531	amino acid
CLJU_RS11525	COG0531	amino acid
CLJU_RS11535	COG1979	alcohol dehydrogenase
CLJU_RS11545	COG1854	S-ribosylhomocysteine lyase activity
CLJU_RS11550	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CLJU_RS11570	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
CLJU_RS11585	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLJU_RS11600	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CLJU_RS11610	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CLJU_RS11635	COG1304	FMN binding
CLJU_RS11640	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CLJU_RS11650	COG2508	Transcriptional regulator
CLJU_RS11660	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLJU_RS11665	COG0437	4 iron, 4 sulfur cluster binding
CLJU_RS11670	COG0243	molybdopterin cofactor binding
CLJU_RS11675	COG2223	nitrite transmembrane transporter activity
CLJU_RS11710	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLJU_RS11715	COG0402	S-adenosylhomocysteine deaminase activity
CLJU_RS11720	COG0493	'glutamate synthase
CLJU_RS11720	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS11725	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLJU_RS11735	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLJU_RS11740	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CLJU_RS11760	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CLJU_RS11765	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CLJU_RS11775	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CLJU_RS11780	COG2252	PERMEase
CLJU_RS11785	COG0402	S-adenosylhomocysteine deaminase activity
CLJU_RS11800	COG1213	nucleotidyl transferase
CLJU_RS11800	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLJU_RS11805	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CLJU_RS11805	COG3608	succinylglutamate desuccinylase aspartoacylase
CLJU_RS11810	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
CLJU_RS11825	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
CLJU_RS11840	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CLJU_RS11840	COG3608	succinylglutamate desuccinylase aspartoacylase
CLJU_RS11845	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CLJU_RS11855	COG2226	methyltransferase
CLJU_RS11855	COG0596	Alpha beta hydrolase
CLJU_RS11855	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CLJU_RS11865	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
CLJU_RS11880	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CLJU_RS11885	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CLJU_RS11890	COG0509	glycine decarboxylation via glycine cleavage system
CLJU_RS11895	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CLJU_RS11900	COG0493	'glutamate synthase
CLJU_RS11905	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CLJU_RS11930	COG0531	amino acid
CLJU_RS11945	COG1733	regulation of RNA biosynthetic process
CLJU_RS11965	COG0531	amino acid
CLJU_RS11970	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CLJU_RS11985	COG0833	amino acid
CLJU_RS11990	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLJU_RS11995	COG0626	cystathionine gamma-synthase activity
CLJU_RS12000	COG2226	methyltransferase
CLJU_RS12010	COG0157	Belongs to the NadC ModD family
CLJU_RS12015	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CLJU_RS12020	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CLJU_RS12025	COG0840	transmembrane signaling receptor activity
CLJU_RS12025	COG3290	protein histidine kinase activity
CLJU_RS12040	COG1268	BioY protein
CLJU_RS12050	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CLJU_RS12060	COG0348	domain, Protein
CLJU_RS12060	COG3901	Regulator of nitric oxide reductase transcription
CLJU_RS12065	COG3693	PFAM glycoside hydrolase, family 10
CLJU_RS12070	COG1191	sigma factor activity
CLJU_RS12075	COG2226	methyltransferase
CLJU_RS12100	COG0110	maltose O-acetyltransferase activity
CLJU_RS12150	COG3279	Response regulator of the LytR AlgR family
CLJU_RS12160	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CLJU_RS12180	COG0542	response to heat
CLJU_RS12185	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CLJU_RS12200	COG0840	transmembrane signaling receptor activity
CLJU_RS12210	COG2807	transmembrane transport
CLJU_RS12215	COG3655	Transcriptional regulator
CLJU_RS12235	COG1695	Transcriptional regulator
CLJU_RS12260	COG2217	Heavy metal translocating P-type atpase
CLJU_RS12270	COG1937	Protein conserved in bacteria
CLJU_RS12275	COG0561	phosphatase activity
CLJU_RS12295	COG1307	EDD domain protein, DegV family
CLJU_RS12320	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLJU_RS12330	COG0628	permease
CLJU_RS12340	COG0315	cyclic pyranopterin monophosphate synthase activity
CLJU_RS12345	COG0521	Mo-molybdopterin cofactor biosynthetic process
CLJU_RS12355	COG1368	sulfuric ester hydrolase activity
CLJU_RS12360	COG5002	protein histidine kinase activity
CLJU_RS12365	COG0745	RESPONSE REGULATOR receiver
CLJU_RS12375	COG1131	(ABC) transporter
CLJU_RS12380	COG1725	Transcriptional regulator
CLJU_RS12390	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CLJU_RS12415	COG0667	Aldo Keto reductase
CLJU_RS12420	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CLJU_RS12425	COG0505	Belongs to the CarA family
CLJU_RS12430	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLJU_RS12435	COG0179	Fumarylacetoacetate (FAA) hydrolase
CLJU_RS12445	COG0514	ATP-dependent DNA helicase (RecQ)
CLJU_RS12460	COG3697	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
CLJU_RS12460	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
CLJU_RS12465	COG3493	citrate carrier protein
CLJU_RS12475	COG3051	citrate lyase alpha subunit
CLJU_RS12490	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CLJU_RS12495	COG0281	malic enzyme
CLJU_RS12505	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLJU_RS12510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLJU_RS12515	COG1116	anion transmembrane transporter activity
CLJU_RS12520	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CLJU_RS12525	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
CLJU_RS12530	COG0583	DNA-binding transcription factor activity
CLJU_RS12540	COG0437	4 iron, 4 sulfur cluster binding
CLJU_RS12545	COG3381	protein complex oligomerization
CLJU_RS12560	COG2385	sporulation resulting in formation of a cellular spore
CLJU_RS12565	COG0077	Prephenate dehydratase
CLJU_RS12565	COG1605	Chorismate mutase
CLJU_RS12570	COG1846	Transcriptional regulator
CLJU_RS12595	COG3290	protein histidine kinase activity
CLJU_RS12600	COG5658	integral membrane protein
CLJU_RS12620	COG1309	transcriptional regulator
CLJU_RS12640	COG0583	DNA-binding transcription factor activity
CLJU_RS12645	COG5002	protein histidine kinase activity
CLJU_RS12650	COG2312	Erythromycin esterase
CLJU_RS12665	COG1131	(ABC) transporter
CLJU_RS12685	COG0745	RESPONSE REGULATOR receiver
CLJU_RS12690	COG5002	protein histidine kinase activity
CLJU_RS12695	COG1136	(ABC) transporter
CLJU_RS12700	COG0577	efflux transmembrane transporter activity
CLJU_RS12705	COG0205	6-phosphofructokinase activity
CLJU_RS12710	COG2211	Major facilitator Superfamily
CLJU_RS12720	COG3958	Transketolase
CLJU_RS12725	COG3959	Transketolase, thiamine diphosphate binding domain
CLJU_RS12730	COG1063	alcohol dehydrogenase
CLJU_RS12735	COG1028	Short-chain dehydrogenase reductase Sdr
CLJU_RS12740	COG2211	Major facilitator Superfamily
CLJU_RS12745	COG2207	Transcriptional regulator
CLJU_RS12745	COG1917	Cupin 2, conserved barrel domain protein
CLJU_RS12755	COG1131	(ABC) transporter
CLJU_RS12765	COG1595	DNA-templated transcription, initiation
CLJU_RS12775	COG1357	PFAM Pentapeptide repeats (8 copies)
CLJU_RS12785	COG1592	Rubrerythrin
CLJU_RS12790	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CLJU_RS12795	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLJU_RS12800	COG1882	Formate acetyltransferase
CLJU_RS12830	COG0673	inositol 2-dehydrogenase activity
CLJU_RS12835	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLJU_RS12840	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLJU_RS12850	COG1349	DNA-binding transcription factor activity
CLJU_RS12865	COG0402	S-adenosylhomocysteine deaminase activity
CLJU_RS12870	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CLJU_RS12880	COG3842	ATPase activity
CLJU_RS12885	COG1177	transmembrane transport
CLJU_RS12890	COG1176	ABC-type spermidine putrescine transport system, permease component I
CLJU_RS12905	COG1309	transcriptional regulator
CLJU_RS12910	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CLJU_RS12915	COG1522	sequence-specific DNA binding
CLJU_RS12930	COG1132	(ABC) transporter
CLJU_RS12940	COG1349	DNA-binding transcription factor activity
CLJU_RS12945	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CLJU_RS12990	COG1733	regulation of RNA biosynthetic process
CLJU_RS13005	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CLJU_RS13045	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CLJU_RS13055	COG1595	DNA-templated transcription, initiation
CLJU_RS13065	COG1116	anion transmembrane transporter activity
CLJU_RS13080	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CLJU_RS13100	COG4221	oxidoreductase activity
CLJU_RS13120	COG2814	Major facilitator Superfamily
CLJU_RS13130	COG1234	tRNA 3'-trailer cleavage
CLJU_RS13140	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CLJU_RS13140	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CLJU_RS13145	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLJU_RS13155	COG0840	transmembrane signaling receptor activity
CLJU_RS13165	COG1606	tRNA processing
CLJU_RS13170	COG0367	asparagine synthase
CLJU_RS13180	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CLJU_RS13185	COG0706	membrane insertase activity
CLJU_RS13195	COG0789	Transcriptional regulator
CLJU_RS13200	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLJU_RS13225	COG0582	viral genome integration into host DNA
CLJU_RS13240	COG1131	(ABC) transporter
CLJU_RS13260	COG0719	Fe-S assembly protein
CLJU_RS13280	COG1695	Transcriptional regulator
CLJU_RS13285	COG0009	L-threonylcarbamoyladenylate synthase
CLJU_RS13290	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLJU_RS13315	COG0582	viral genome integration into host DNA
CLJU_RS13340	COG1131	(ABC) transporter
CLJU_RS13360	COG0534	Mate efflux family protein
CLJU_RS13365	COG1846	Transcriptional regulator
CLJU_RS13375	COG1131	(ABC) transporter
CLJU_RS13395	COG0745	RESPONSE REGULATOR receiver
CLJU_RS13400	COG2205	protein histidine kinase activity
CLJU_RS13405	COG1136	(ABC) transporter
CLJU_RS13445	COG1151	hydroxylamine reductase activity
CLJU_RS13485	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLJU_RS13520	COG1396	sequence-specific DNA binding
CLJU_RS13590	COG3290	protein histidine kinase activity
CLJU_RS13635	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CLJU_RS13640	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLJU_RS13650	COG1126	abc transporter atp-binding protein
CLJU_RS13655	COG4948	Mandelate Racemase Muconate Lactonizing
CLJU_RS13660	COG1464	Belongs to the NlpA lipoprotein family
CLJU_RS13665	COG2011	ABC-type metal ion transport system permease component
CLJU_RS13670	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLJU_RS13685	COG0709	Synthesizes selenophosphate from selenide and ATP
CLJU_RS13690	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLJU_RS13695	COG0583	DNA-binding transcription factor activity
CLJU_RS13740	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLJU_RS13765	COG0701	Predicted permease
CLJU_RS13795	COG0778	Nitroreductase
CLJU_RS13805	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLJU_RS13810	COG3835	regulator
CLJU_RS13835	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CLJU_RS13840	COG0840	transmembrane signaling receptor activity
CLJU_RS13845	COG0784	Response regulator, receiver
CLJU_RS13850	COG0833	amino acid
CLJU_RS13855	COG0784	Response regulator, receiver
CLJU_RS13860	COG3850	Histidine kinase
CLJU_RS13860	COG5002	protein histidine kinase activity
CLJU_RS13870	COG3858	chitin binding
CLJU_RS13870	COG1388	LysM domain
CLJU_RS13875	COG2084	Dehydrogenase
CLJU_RS13880	COG2721	sulfolactate sulfo-lyase activity
CLJU_RS13885	COG1929	Belongs to the glycerate kinase type-1 family
CLJU_RS13890	COG2271	Major facilitator Superfamily
CLJU_RS13895	COG4948	Mandelate Racemase Muconate Lactonizing
CLJU_RS13905	COG2610	gluconate transmembrane transporter activity
CLJU_RS13920	COG0471	metal ion transport
CLJU_RS13930	COG0656	L-ascorbic acid biosynthetic process
CLJU_RS13935	COG3835	regulator
CLJU_RS13940	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLJU_RS13960	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CLJU_RS13965	COG5001	Diguanylate cyclase
CLJU_RS13995	COG0301	tRNA thio-modification
CLJU_RS14000	COG1104	cysteine desulfurase activity
CLJU_RS14020	COG0210	DNA helicase
CLJU_RS14030	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CLJU_RS14035	COG1253	flavin adenine dinucleotide binding
CLJU_RS14065	COG3290	protein histidine kinase activity
CLJU_RS14080	COG0539	negative regulation of cytoplasmic translation
CLJU_RS14085	COG3191	aminopeptidase activity
CLJU_RS14090	COG4684	Psort location CytoplasmicMembrane, score
CLJU_RS14105	COG1122	ATPase activity
CLJU_RS14120	COG1550	Protein conserved in bacteria
CLJU_RS14135	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CLJU_RS14150	COG0657	acetylesterase activity
CLJU_RS14165	COG0738	Major facilitator superfamily
CLJU_RS14190	COG0710	3-dehydroquinate dehydratase activity
CLJU_RS14195	COG0583	DNA-binding transcription factor activity
CLJU_RS14220	COG2197	response regulator
CLJU_RS14265	COG1592	Rubrerythrin
CLJU_RS14265	COG1773	rubredoxin
CLJU_RS14280	COG1126	abc transporter atp-binding protein
CLJU_RS14290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLJU_RS14325	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLJU_RS14330	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
CLJU_RS14340	COG2217	Heavy metal translocating P-type atpase
CLJU_RS14365	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CLJU_RS14370	COG1605	Chorismate mutase
CLJU_RS14370	COG0077	Prephenate dehydratase
CLJU_RS14375	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CLJU_RS14380	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CLJU_RS14385	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CLJU_RS14390	COG0287	Prephenate dehydrogenase
CLJU_RS14395	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CLJU_RS14405	COG0745	RESPONSE REGULATOR receiver
CLJU_RS14410	COG1028	Short-chain dehydrogenase reductase Sdr
CLJU_RS14415	COG0840	transmembrane signaling receptor activity
CLJU_RS14420	COG3830	Belongs to the UPF0237 family
CLJU_RS14430	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CLJU_RS14430	COG2199	diguanylate cyclase activity
CLJU_RS14435	COG0840	transmembrane signaling receptor activity
CLJU_RS14485	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLJU_RS14495	COG0436	Aminotransferase
CLJU_RS14515	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS14520	COG1794	racemase activity, acting on amino acids and derivatives
CLJU_RS14525	COG2814	Major facilitator Superfamily
CLJU_RS14535	COG0653	protein targeting
CLJU_RS14540	COG0730	response to heat
CLJU_RS14545	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLJU_RS14550	COG0275	rRNA processing
CLJU_RS14595	COG0745	RESPONSE REGULATOR receiver
CLJU_RS14600	COG5002	protein histidine kinase activity
CLJU_RS14610	COG0348	domain, Protein
CLJU_RS14620	COG0006	proline dipeptidase activity
CLJU_RS14630	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CLJU_RS14640	COG1994	Peptidase M50
CLJU_RS14650	COG5434	Belongs to the glycosyl hydrolase 28 family
CLJU_RS14650	COG4632	Exopolysaccharide biosynthesis protein
CLJU_RS14655	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CLJU_RS14715	COG1028	Short-chain dehydrogenase reductase Sdr
CLJU_RS14725	COG1695	Transcriptional regulator
CLJU_RS14750	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CLJU_RS14760	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
CLJU_RS14775	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLJU_RS14780	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CLJU_RS14785	COG1079	Belongs to the binding-protein-dependent transport system permease family
CLJU_RS14790	COG4603	Belongs to the binding-protein-dependent transport system permease family
CLJU_RS14795	COG3845	ABC transporter
CLJU_RS14805	COG2964	Protein conserved in bacteria
CLJU_RS14810	COG3757	hydrolase, family 25
CLJU_RS14810	COG3409	Peptidoglycan-binding domain 1 protein
CLJU_RS14815	COG1228	amidohydrolase
CLJU_RS14820	COG2201	protein-glutamate methylesterase activity
CLJU_RS14825	COG0784	Response regulator, receiver
CLJU_RS14825	COG2205	protein histidine kinase activity
CLJU_RS14825	COG5002	protein histidine kinase activity
CLJU_RS14835	COG3279	Response regulator of the LytR AlgR family
CLJU_RS14855	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLJU_RS14860	COG2205	protein histidine kinase activity
CLJU_RS14865	COG0745	RESPONSE REGULATOR receiver
CLJU_RS14870	COG0577	efflux transmembrane transporter activity
CLJU_RS14875	COG1136	(ABC) transporter
CLJU_RS14895	COG2819	hydrolase of the alpha beta superfamily
CLJU_RS14920	COG1053	succinate dehydrogenase
CLJU_RS14945	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS15020	COG2828	Protein conserved in bacteria
CLJU_RS15030	COG3051	citrate lyase alpha subunit
CLJU_RS15045	COG0281	malic enzyme
CLJU_RS15050	COG1802	Transcriptional regulator
CLJU_RS15065	COG0667	Aldo Keto reductase
CLJU_RS15070	COG1247	-acetyltransferase
CLJU_RS15075	COG0840	transmembrane signaling receptor activity
CLJU_RS15085	COG0456	acetyltransferase
CLJU_RS15090	COG0840	transmembrane signaling receptor activity
CLJU_RS15095	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLJU_RS15100	COG2357	RelA SpoT domain protein
CLJU_RS15105	COG0745	RESPONSE REGULATOR receiver
CLJU_RS15120	COG3300	MHYT domain
CLJU_RS15120	COG5001	Diguanylate cyclase
CLJU_RS15175	COG3835	regulator
CLJU_RS15195	COG2267	carboxylic ester hydrolase activity
CLJU_RS15220	COG2814	Major facilitator Superfamily
CLJU_RS15225	COG0583	DNA-binding transcription factor activity
CLJU_RS15230	COG0384	phenazine biosynthesis protein PhzF
CLJU_RS15285	COG2076	Multidrug Resistance protein
CLJU_RS15305	COG3547	Transposase (IS116 IS110 IS902 family)
CLJU_RS15485	COG5484	DNA packaging
CLJU_RS15485	COG3728	DNA packaging
CLJU_RS15495	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CLJU_RS15510	COG1598	PFAM Uncharacterised protein family UPF0150
CLJU_RS15515	COG5492	domain, Protein
CLJU_RS15640	COG1396	sequence-specific DNA binding
CLJU_RS15650	COG0582	viral genome integration into host DNA
CLJU_RS15665	COG1121	(ABC) transporter
CLJU_RS15670	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLJU_RS15680	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
CLJU_RS15750	COG0113	porphobilinogen synthase activity
CLJU_RS15770	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CLJU_RS15775	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CLJU_RS15785	COG1122	ATPase activity
CLJU_RS15800	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS15820	COG1464	Belongs to the NlpA lipoprotein family
CLJU_RS15825	COG1181	Belongs to the D-alanine--D-alanine ligase family
CLJU_RS15830	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLJU_RS15840	COG1937	Protein conserved in bacteria
CLJU_RS15845	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CLJU_RS15890	COG0671	phosphoesterase, PA-phosphatase related
CLJU_RS16000	COG0582	viral genome integration into host DNA
CLJU_RS16055	COG3409	Peptidoglycan-binding domain 1 protein
CLJU_RS16055	COG3773	Cell wall hydrolase
CLJU_RS16140	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CLJU_RS16160	COG2814	Major facilitator Superfamily
CLJU_RS16170	COG1476	TRANSCRIPTIONal
CLJU_RS16185	COG2986	histidine ammonia-lyase
CLJU_RS16200	COG4145	pantothenate transmembrane transporter activity
CLJU_RS16205	COG3829	transcription factor binding
CLJU_RS16210	COG0527	aspartate kinase activity
CLJU_RS16235	COG0740	serine-type endopeptidase activity
CLJU_RS16240	COG2207	Transcriptional regulator
CLJU_RS16270	COG1131	(ABC) transporter
CLJU_RS16275	COG1533	DNA photolyase activity
CLJU_RS16285	COG0351	phosphomethylpyrimidine kinase
CLJU_RS16290	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CLJU_RS16310	COG1380	Effector of murein hydrolase LrgA
CLJU_RS16315	COG0534	Mate efflux family protein
CLJU_RS16330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLJU_RS16335	COG0765	amino acid transport
CLJU_RS16340	COG0840	transmembrane signaling receptor activity
CLJU_RS16345	COG1074	ATP-dependent DNA helicase activity
CLJU_RS16350	COG2203	Gaf domain
CLJU_RS16350	COG2199	diguanylate cyclase activity
CLJU_RS16360	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLJU_RS16365	COG0310	cobalt ion transport
CLJU_RS16370	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CLJU_RS16375	COG0095	Lipoate-protein ligase
CLJU_RS16385	COG1278	Cold shock
CLJU_RS16390	COG1760	l-serine dehydratase
CLJU_RS16395	COG1760	l-serine dehydratase
CLJU_RS16405	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLJU_RS16415	COG0583	DNA-binding transcription factor activity
CLJU_RS16475	COG3546	catalase activity
CLJU_RS16480	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLJU_RS16505	COG0840	transmembrane signaling receptor activity
CLJU_RS16510	COG2720	vancomycin resistance protein
CLJU_RS16515	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CLJU_RS16520	COG1215	transferase activity, transferring glycosyl groups
CLJU_RS16540	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLJU_RS16540	COG0723	plastoquinol--plastocyanin reductase activity
CLJU_RS16545	COG0657	acetylesterase activity
CLJU_RS16565	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLJU_RS16565	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLJU_RS16580	COG1272	protein, Hemolysin III
CLJU_RS16590	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CLJU_RS16595	COG0124	histidyl-tRNA synthetase
CLJU_RS16600	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLJU_RS16605	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLJU_RS16610	COG1490	D-aminoacyl-tRNA deacylase activity
CLJU_RS16615	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLJU_RS16620	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLJU_RS16630	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLJU_RS16635	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLJU_RS16655	COG1862	Preprotein translocase
CLJU_RS16660	COG0343	queuine tRNA-ribosyltransferase activity
CLJU_RS16665	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CLJU_RS16670	COG2255	four-way junction helicase activity
CLJU_RS16675	COG0632	four-way junction helicase activity
CLJU_RS16690	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CLJU_RS16700	COG1739	Uncharacterized protein family UPF0029
CLJU_RS16705	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS16715	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLJU_RS16720	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLJU_RS16740	COG2172	sigma factor antagonist activity
CLJU_RS16760	COG1959	2 iron, 2 sulfur cluster binding
CLJU_RS16765	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
CLJU_RS16770	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CLJU_RS16775	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
CLJU_RS16780	COG0728	peptidoglycan biosynthetic process
CLJU_RS16785	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS16820	COG0728	peptidoglycan biosynthetic process
CLJU_RS16835	COG1216	Glycosyl transferase, family 2
CLJU_RS16835	COG1442	glycosyl transferase family 8
CLJU_RS16845	COG0438	transferase activity, transferring glycosyl groups
CLJU_RS16855	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CLJU_RS16865	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLJU_RS16870	COG1982	Orn Lys Arg decarboxylase major
CLJU_RS16890	COG1695	Transcriptional regulator
CLJU_RS16910	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLJU_RS16925	COG1695	Transcriptional regulator
CLJU_RS16945	COG1683	Conserved Protein
CLJU_RS16950	COG1193	negative regulation of DNA recombination
CLJU_RS16955	COG0826	peptidase U32
CLJU_RS16960	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
CLJU_RS16970	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CLJU_RS16975	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLJU_RS16980	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CLJU_RS16990	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CLJU_RS16995	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CLJU_RS17030	COG0436	Aminotransferase
CLJU_RS17035	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CLJU_RS17040	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLJU_RS17045	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLJU_RS17055	COG2226	methyltransferase
CLJU_RS17065	COG2171	N-acyltransferase activity
CLJU_RS17080	COG0726	polysaccharide deacetylase
CLJU_RS17115	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLJU_RS17135	COG0583	DNA-binding transcription factor activity
CLJU_RS17140	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLJU_RS17145	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CLJU_RS17150	COG2271	Major facilitator Superfamily
CLJU_RS17155	COG3964	amidohydrolase
CLJU_RS17175	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLJU_RS17180	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLJU_RS17185	COG1129	ABC transporter
CLJU_RS17190	COG1879	ABC-type sugar transport system periplasmic component
CLJU_RS17195	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLJU_RS17215	COG0789	Transcriptional regulator
CLJU_RS17225	COG1028	Short-chain dehydrogenase reductase Sdr
CLJU_RS17255	COG2207	Transcriptional regulator
CLJU_RS17255	COG1917	Cupin 2, conserved barrel domain protein
CLJU_RS17260	COG2814	Major facilitator Superfamily
CLJU_RS17320	COG0693	protein deglycase activity
CLJU_RS17360	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLJU_RS17365	COG0778	Nitroreductase
CLJU_RS17390	COG1725	Transcriptional regulator
CLJU_RS17410	COG1116	anion transmembrane transporter activity
CLJU_RS17415	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLJU_RS17445	COG0513	Belongs to the DEAD box helicase family
CLJU_RS17455	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CLJU_RS17465	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CLJU_RS17490	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
CLJU_RS17495	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CLJU_RS17500	COG0406	alpha-ribazole phosphatase activity
CLJU_RS17505	COG0735	belongs to the Fur family
CLJU_RS17520	COG2378	regulation of single-species biofilm formation
CLJU_RS17530	COG1266	CAAX protease self-immunity
CLJU_RS17535	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CLJU_RS17540	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CLJU_RS17545	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CLJU_RS17550	COG0740	serine-type endopeptidase activity
CLJU_RS17555	COG0544	peptidyl-prolyl cis-trans isomerase activity
CLJU_RS17575	COG0167	dihydroorotate dehydrogenase activity
CLJU_RS17580	COG0543	2 iron, 2 sulfur cluster binding
CLJU_RS17585	COG0284	orotidine-5'-phosphate decarboxylase activity
CLJU_RS17590	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
CLJU_RS17595	COG0540	Belongs to the ATCase OTCase family
CLJU_RS17610	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CLJU_RS17615	COG2814	Major facilitator Superfamily
CLJU_RS17625	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CLJU_RS17665	COG1953	Uracil, thiamine, allantoin
CLJU_RS17685	COG2508	Transcriptional regulator
CLJU_RS17690	COG0697	spore germination
CLJU_RS17705	COG0531	amino acid
CLJU_RS17710	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLJU_RS17725	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLJU_RS17755	COG2703	oxygen carrier activity
CLJU_RS17765	COG1408	metallophosphoesterase
CLJU_RS17780	COG0824	Thioesterase
CLJU_RS17790	COG2059	Chromate
CLJU_RS17810	COG0840	transmembrane signaling receptor activity
CLJU_RS17815	COG1478	Catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives
CLJU_RS17815	COG0778	Nitroreductase
CLJU_RS17825	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CLJU_RS17840	COG2226	methyltransferase
CLJU_RS17985	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLJU_RS17985	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CLJU_RS18020	COG1191	sigma factor activity
CLJU_RS18040	COG1396	sequence-specific DNA binding
CLJU_RS18055	COG0582	viral genome integration into host DNA
CLJU_RS18140	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CLJU_RS18145	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CLJU_RS18165	COG4166	transmembrane transport
CLJU_RS18190	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CLJU_RS18205	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CLJU_RS18210	COG0210	DNA helicase
CLJU_RS18215	COG4496	protein, YerC YecD
CLJU_RS18220	COG1187	pseudouridine synthase activity
CLJU_RS18225	COG0741	lytic transglycosylase activity
CLJU_RS18235	COG2076	Multidrug Resistance protein
CLJU_RS18255	COG3547	Transposase (IS116 IS110 IS902 family)
CLJU_RS18265	COG1671	Belongs to the UPF0178 family
CLJU_RS18280	COG1733	regulation of RNA biosynthetic process
CLJU_RS18285	COG0166	Belongs to the GPI family
CLJU_RS18290	COG0840	transmembrane signaling receptor activity
CLJU_RS18300	COG0519	Catalyzes the synthesis of GMP from XMP
CLJU_RS18305	COG0517	IMP dehydrogenase activity
CLJU_RS18305	COG0516	GMP reductase activity
CLJU_RS18310	COG0459	protein refolding
CLJU_RS18315	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CLJU_RS18320	COG0398	Pfam SNARE associated Golgi protein
CLJU_RS18340	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CLJU_RS18345	COG0488	(ABC) transporter
CLJU_RS18355	COG0842	Transport permease protein
CLJU_RS18355	COG1129	ABC transporter
CLJU_RS18360	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CLJU_RS18365	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLJU_RS18375	COG3279	Response regulator of the LytR AlgR family
CLJU_RS18385	COG1966	Carbon starvation protein
CLJU_RS18390	COG1966	Carbon starvation protein
CLJU_RS18400	COG4667	esterase of the alpha-beta hydrolase superfamily
CLJU_RS18405	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLJU_RS18410	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CLJU_RS18415	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CLJU_RS18420	COG1131	(ABC) transporter
CLJU_RS18435	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
CLJU_RS18450	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLJU_RS18460	COG2116	formate transmembrane transporter activity
CLJU_RS18480	COG2871	sodium ion transport
CLJU_RS18485	COG0509	glycine decarboxylation via glycine cleavage system
CLJU_RS18515	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLJU_RS18530	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CLJU_RS18535	COG3404	Formiminotransferase-cyclodeaminase
CLJU_RS18540	COG2759	Belongs to the formate--tetrahydrofolate ligase family
CLJU_RS18550	COG1151	hydroxylamine reductase activity
CLJU_RS18570	COG0735	belongs to the Fur family
CLJU_RS18580	COG2894	cell division
CLJU_RS18585	COG0489	protein tyrosine kinase activity
CLJU_RS18620	COG2855	membrane
CLJU_RS18635	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
CLJU_RS18640	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLJU_RS18650	COG0701	Predicted permease
CLJU_RS18655	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLJU_RS18660	COG0701	Predicted permease
CLJU_RS18670	COG0583	DNA-binding transcription factor activity
CLJU_RS18680	COG0719	Fe-S assembly protein
CLJU_RS18685	COG1136	(ABC) transporter
CLJU_RS18705	COG2323	membrane
CLJU_RS18710	COG2323	membrane
CLJU_RS18730	COG1120	ATPase activity
CLJU_RS18735	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLJU_RS18740	COG2226	methyltransferase
CLJU_RS18755	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CLJU_RS18760	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CLJU_RS18775	COG0617	tRNA 3'-terminal CCA addition
CLJU_RS18785	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CLJU_RS18800	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CLJU_RS18805	COG0802	atpase or kinase
CLJU_RS18810	COG1214	PFAM Peptidase M22, glycoprotease
CLJU_RS18815	COG0456	acetyltransferase
CLJU_RS18820	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CLJU_RS18830	COG2865	translation initiation factor activity
CLJU_RS18850	COG0561	phosphatase activity
CLJU_RS18855	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CLJU_RS18860	COG0180	Tryptophanyl-tRNA synthetase
CLJU_RS18865	COG3459	Glycosyltransferase 36 associated
CLJU_RS18870	COG0019	diaminopimelate decarboxylase activity
CLJU_RS18880	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CLJU_RS18885	COG3973	AAA domain
CLJU_RS18890	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLJU_RS18905	COG1929	Belongs to the glycerate kinase type-1 family
CLJU_RS18910	COG2271	Major facilitator Superfamily
CLJU_RS18920	COG3395	kinase activity
CLJU_RS18930	COG5599	Phosphatase
CLJU_RS18935	COG3493	citrate carrier protein
CLJU_RS18940	COG0281	malic enzyme
CLJU_RS18945	COG4565	transcriptional regulatory protein
CLJU_RS18950	COG3290	protein histidine kinase activity
CLJU_RS18955	COG2076	Multidrug Resistance protein
CLJU_RS18975	COG3547	Transposase (IS116 IS110 IS902 family)
CLJU_RS18980	COG1396	sequence-specific DNA binding
CLJU_RS18990	COG0583	DNA-binding transcription factor activity
CLJU_RS19010	COG0574	Belongs to the PEP-utilizing enzyme family
CLJU_RS19010	COG3848	Pyruvate phosphate dikinase
CLJU_RS19025	COG1136	(ABC) transporter
CLJU_RS19030	COG5002	protein histidine kinase activity
CLJU_RS19035	COG0745	RESPONSE REGULATOR receiver
CLJU_RS19055	COG5002	protein histidine kinase activity
CLJU_RS19080	COG0840	transmembrane signaling receptor activity
CLJU_RS19105	COG0768	penicillin binding
CLJU_RS19125	COG0697	spore germination
CLJU_RS19140	COG2246	polysaccharide biosynthetic process
CLJU_RS19145	COG0463	Glycosyl transferase, family 2
CLJU_RS19160	COG0028	Belongs to the TPP enzyme family
CLJU_RS19165	COG1454	alcohol dehydrogenase
CLJU_RS19170	COG0583	DNA-binding transcription factor activity
CLJU_RS19180	COG0531	amino acid
CLJU_RS19185	COG0697	spore germination
CLJU_RS19215	COG0697	spore germination
CLJU_RS19240	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CLJU_RS19245	COG0557	exoribonuclease II activity
CLJU_RS19250	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CLJU_RS19255	COG0148	phosphopyruvate hydratase activity
CLJU_RS19260	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CLJU_RS19265	COG0149	triose-phosphate isomerase activity
CLJU_RS19270	COG0126	phosphoglycerate kinase activity
CLJU_RS19275	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CLJU_RS19280	COG2390	Transcriptional regulator
CLJU_RS19285	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CLJU_RS19290	COG1307	EDD domain protein, DegV family
CLJU_RS19295	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CLJU_RS19300	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLJU_RS19300	COG2247	cell wall binding repeat
CLJU_RS19305	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
CLJU_RS19310	COG0697	spore germination
CLJU_RS19325	COG2720	vancomycin resistance protein
CLJU_RS19330	COG1546	Belongs to the CinA family
CLJU_RS19330	COG1058	Belongs to the CinA family
CLJU_RS19335	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLJU_RS19345	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CLJU_RS19350	COG1045	serine acetyltransferase
CLJU_RS19355	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLJU_RS19360	COG1295	ribonuclease BN
CLJU_RS19370	COG1773	rubredoxin
CLJU_RS19370	COG1592	Rubrerythrin
CLJU_RS19380	COG2271	Major facilitator Superfamily
CLJU_RS19385	COG0583	DNA-binding transcription factor activity
CLJU_RS19395	COG0318	PFAM AMP-dependent synthetase and ligase
CLJU_RS19405	COG2086	electron transfer activity
CLJU_RS19410	COG1960	acyl-CoA dehydrogenase activity
CLJU_RS19420	COG1960	acyl-CoA dehydrogenase activity
CLJU_RS19425	COG1482	cell wall glycoprotein biosynthetic process
CLJU_RS19450	COG0473	3-isopropylmalate dehydrogenase activity
CLJU_RS19455	COG0745	RESPONSE REGULATOR receiver
CLJU_RS19460	COG2205	protein histidine kinase activity
CLJU_RS19470	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CLJU_RS19475	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CLJU_RS19480	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CLJU_RS19485	COG0531	amino acid
CLJU_RS19490	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
CLJU_RS19495	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
CLJU_RS19500	COG1079	Belongs to the binding-protein-dependent transport system permease family
CLJU_RS19510	COG3845	ABC transporter
CLJU_RS19520	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CLJU_RS19545	COG2972	Histidine kinase
CLJU_RS19545	COG0745	RESPONSE REGULATOR receiver
CLJU_RS19565	COG4869	propanediol catabolic process
CLJU_RS19570	COG1454	alcohol dehydrogenase
CLJU_RS19570	COG1012	belongs to the aldehyde dehydrogenase family
CLJU_RS19585	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CLJU_RS19590	COG4656	Part of a membrane complex involved in electron transport
CLJU_RS19615	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLJU_RS19620	COG1882	Formate acetyltransferase
CLJU_RS19625	COG1454	alcohol dehydrogenase
CLJU_RS19625	COG1012	belongs to the aldehyde dehydrogenase family
CLJU_RS19660	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLJU_RS19670	COG2814	Major facilitator Superfamily
CLJU_RS19675	COG1309	transcriptional regulator
CLJU_RS19685	COG0586	Pfam SNARE associated Golgi protein
CLJU_RS19690	COG2205	protein histidine kinase activity
CLJU_RS19695	COG0745	RESPONSE REGULATOR receiver
CLJU_RS19700	COG0577	efflux transmembrane transporter activity
CLJU_RS19705	COG1136	(ABC) transporter
CLJU_RS19730	COG0488	(ABC) transporter
CLJU_RS19750	COG2234	aminopeptidase activity
CLJU_RS19755	COG0789	Transcriptional regulator
CLJU_RS19755	COG4978	Transcriptional regulator
CLJU_RS19765	COG3620	sequence-specific DNA binding
CLJU_RS19770	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLJU_RS19825	COG5002	protein histidine kinase activity
CLJU_RS19835	COG1575	Belongs to the MenA family. Type 1 subfamily
CLJU_RS19850	COG0142	geranyltranstransferase activity
CLJU_RS19865	COG2860	membrane
CLJU_RS19870	COG1757	Na H antiporter
CLJU_RS19875	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CLJU_RS19880	COG0251	oxidation-reduction process
CLJU_RS19890	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLJU_RS19895	COG0251	oxidation-reduction process
CLJU_RS19915	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CLJU_RS19920	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
CLJU_RS19930	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CLJU_RS19935	COG3409	Peptidoglycan-binding domain 1 protein
CLJU_RS19935	COG3773	Cell wall hydrolase
CLJU_RS19940	COG0492	ferredoxin-NADP+ reductase activity
CLJU_RS19945	COG3118	belongs to the thioredoxin family
CLJU_RS19960	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLJU_RS19970	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CLJU_RS19985	COG3052	prosthetic group binding
CLJU_RS19990	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CLJU_RS20025	COG1113	amino acid transport
CLJU_RS20030	COG3829	transcription factor binding
CLJU_RS20035	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CLJU_RS20045	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CLJU_RS20055	COG0101	tRNA pseudouridine synthase activity
CLJU_RS20060	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CLJU_RS20075	COG0203	ribosomal protein L17
CLJU_RS20080	COG0202	RNA polymerase activity
CLJU_RS20090	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CLJU_RS20095	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CLJU_RS20105	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CLJU_RS20110	COG0563	adenylate kinase activity
CLJU_RS20115	COG0201	protein transport
CLJU_RS20120	COG0200	Binds to the 23S rRNA
CLJU_RS20125	COG1841	ribosomal large subunit assembly
CLJU_RS20130	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CLJU_RS20135	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CLJU_RS20140	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CLJU_RS20145	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CLJU_RS20150	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CLJU_RS20155	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CLJU_RS20165	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CLJU_RS20170	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CLJU_RS20175	COG0255	Belongs to the universal ribosomal protein uL29 family
CLJU_RS20180	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CLJU_RS20185	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CLJU_RS20190	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CLJU_RS20195	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CLJU_RS20200	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CLJU_RS20205	COG0089	rRNA binding
CLJU_RS20210	COG0088	Forms part of the polypeptide exit tunnel
CLJU_RS20215	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CLJU_RS20220	COG0051	transcription antitermination factor activity, RNA binding
CLJU_RS20225	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CLJU_RS20230	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLJU_RS20235	COG0049	tRNA binding
CLJU_RS20240	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CLJU_RS20245	COG1358	cellular component organization or biogenesis
CLJU_RS20250	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CLJU_RS20255	COG0085	RNA polymerase activity
CLJU_RS20260	COG0222	ribosome binding
CLJU_RS20270	COG0081	regulation of translation
CLJU_RS20290	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CLJU_RS20295	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CLJU_RS20320	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLJU_RS20330	COG0215	cysteine-tRNA ligase activity
CLJU_RS20335	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CLJU_RS20340	COG4956	integral membrane protein (PIN domain superfamily)
CLJU_RS20350	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
CLJU_RS20355	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLJU_RS20360	COG0542	response to heat
CLJU_RS20365	COG3869	Catalyzes the specific phosphorylation of arginine residues in
CLJU_RS20370	COG3880	PFAM UvrB UvrC protein
CLJU_RS20385	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLJU_RS20420	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CLJU_RS20425	COG0423	glycine-tRNA ligase activity
CLJU_RS20435	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CLJU_RS20440	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CLJU_RS20450	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLJU_RS20455	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CLJU_RS20460	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLJU_RS20465	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CLJU_RS20505	COG1098	S1 RNA binding domain
CLJU_RS20525	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CLJU_RS20535	COG3956	TIGRFAM MazG family protein
CLJU_RS20540	COG2244	polysaccharide biosynthetic process
CLJU_RS20545	COG2002	toxin-antitoxin pair type II binding
CLJU_RS20550	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLJU_RS20555	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLJU_RS20560	COG0193	aminoacyl-tRNA hydrolase activity
CLJU_RS20565	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLJU_RS20570	COG5002	protein histidine kinase activity
CLJU_RS20575	COG0745	RESPONSE REGULATOR receiver
CLJU_RS20585	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CLJU_RS20590	COG2088	sporulation resulting in formation of a cellular spore
CLJU_RS20595	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CLJU_RS20600	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CLJU_RS20625	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLJU_RS20635	COG2045	Belongs to the ComB family
CLJU_RS20640	COG1242	4 iron, 4 sulfur cluster binding
CLJU_RS20650	COG3949	Membrane
CLJU_RS20665	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CLJU_RS20685	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CLJU_RS20690	COG0653	protein targeting
CLJU_RS20700	COG0017	Asparaginyl-tRNA synthetase
CLJU_RS20720	COG0583	DNA-binding transcription factor activity
CLJU_RS20725	COG1404	Belongs to the peptidase S8 family
CLJU_RS20730	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLJU_RS20735	COG0825	malonyl-CoA metabolic process
CLJU_RS20740	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CLJU_RS20745	COG0439	Biotin carboxylase
CLJU_RS20750	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CLJU_RS20755	COG0511	ligase activity, forming carbon-carbon bonds
CLJU_RS20760	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLJU_RS20765	COG1028	Short-chain dehydrogenase reductase Sdr
CLJU_RS20770	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CLJU_RS20775	COG2070	2-Nitropropane dioxygenase
CLJU_RS20780	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CLJU_RS20785	COG1846	Transcriptional regulator
CLJU_RS20850	COG2081	HI0933 family
CLJU_RS20860	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CLJU_RS20875	COG1027	Aspartate ammonia-lyase
CLJU_RS20880	COG1160	GTP binding
CLJU_RS20895	COG1362	aminopeptidase activity
CLJU_RS20910	COG0583	DNA-binding transcription factor activity
CLJU_RS20920	COG0784	Response regulator, receiver
CLJU_RS20930	COG0840	transmembrane signaling receptor activity
CLJU_RS20935	COG2957	Belongs to the agmatine deiminase family
CLJU_RS20940	COG0531	amino acid
CLJU_RS20945	COG3829	transcription factor binding
CLJU_RS20950	COG3829	transcription factor binding
CLJU_RS20975	COG3254	rhamnose metabolic process
CLJU_RS20980	COG2814	Major facilitator Superfamily
CLJU_RS20985	COG0235	Class ii aldolase
CLJU_RS20990	COG4806	L-rhamnose isomerase
CLJU_RS21000	COG1349	DNA-binding transcription factor activity
CLJU_RS21005	COG0583	DNA-binding transcription factor activity
CLJU_RS21010	COG0840	transmembrane signaling receptor activity
CLJU_RS21030	COG0071	Belongs to the small heat shock protein (HSP20) family
CLJU_RS21035	COG0071	Belongs to the small heat shock protein (HSP20) family
CLJU_RS21040	COG0305	Participates in initiation and elongation during chromosome replication
CLJU_RS21045	COG0470	DNA polymerase III
CLJU_RS21045	COG1067	ATP-dependent peptidase activity
CLJU_RS21050	COG0359	binds to the 23S rRNA
CLJU_RS21055	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CLJU_RS21070	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CLJU_RS21080	COG0360	Binds together with S18 to 16S ribosomal RNA
CLJU_RS21090	COG0668	transmembrane transport
CLJU_RS21100	COG0628	permease
CLJU_RS21120	COG1475	DNA binding
CLJU_RS21125	COG1192	Involved in chromosome partitioning
CLJU_RS21135	COG0357	Ribosomal RNA small subunit methyltransferase G
CLJU_RS21140	COG0445	tRNA wobble uridine modification
CLJU_RS21145	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CLJU_RS21150	COG1847	R3H domain protein
CLJU_RS21160	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CLJU_RS21165	COG0594	ribonuclease P activity
CLJU_RS21170	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CLJU_RS21180	COG1396	sequence-specific DNA binding
CLJU_RS21210	COG2247	cell wall binding repeat
CLJU_RS21210	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLJU_RS21220	COG0840	transmembrane signaling receptor activity
CLJU_RS21235	COG4974	Belongs to the 'phage' integrase family
CLJU_RS21285	COG0791	NLP P60 protein
CLJU_RS21315	COG2385	sporulation resulting in formation of a cellular spore
CLJU_RS21315	COG2247	cell wall binding repeat
CLJU_RS21340	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CLJU_RS21385	COG0840	transmembrane signaling receptor activity
CLJU_RS21415	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
CLJU_RS21460	COG0789	Transcriptional regulator
CLJU_RS21460	COG4978	Transcriptional regulator
CLJU_RS21475	COG2200	EAL domain
CLJU_RS21485	COG3706	GGDEF domain
CLJU_RS21485	COG2203	Gaf domain
CLJU_RS21485	COG4251	negative regulation of phosphorylation
CLJU_RS21485	COG5001	Diguanylate cyclase
CLJU_RS21495	COG2176	DNA-directed DNA polymerase activity
CLJU_RS21500	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLJU_RS21505	COG3447	MASE1 domain protein
CLJU_RS21505	COG5002	protein histidine kinase activity
CLJU_RS21505	COG5001	Diguanylate cyclase
CLJU_RS21510	COG0004	ammonium transporteR
CLJU_RS21515	COG0004	ammonium transporteR