CLJU_RS00005	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CLJU_RS00010	SM00480	DNA polymerase III beta subunit
CLJU_RS00030	SM00387	Histidine kinase-like ATPases
CLJU_RS00030	SM00433	TopoisomeraseII
CLJU_RS00035	SM00434	DNA Topoisomerase IV
CLJU_RS00115	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS00230	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS00280	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS00285	SM00346	helix_turn_helix isocitrate lyase regulation
CLJU_RS00290	SM01130	CLJU_RS00290
CLJU_RS00310	SM00871	Bacterial transcription activator, effector binding domain
CLJU_RS00385	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS00390	SM00387	Histidine kinase-like ATPases
CLJU_RS00390	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS00395	SM00448	cheY-homologous receiver domain
CLJU_RS00395	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS00410	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS00420	SM00493	CLJU_RS00420
CLJU_RS00510	SM00448	cheY-homologous receiver domain
CLJU_RS00510	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS00515	SM00387	Histidine kinase-like ATPases
CLJU_RS00515	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS00520	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS00545	SM00986	Uracil DNA glycosylase superfamily
CLJU_RS00545	SM00987	UreE urease accessory protein, C-terminal domain 
CLJU_RS00590	SM01007	Class II Aldolase and Adducin N-terminal domain
CLJU_RS00600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS00605	SM00813	Alpha-L-arabinofuranosidase C-terminus
CLJU_RS00620	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS00740	SM00966	SpoVT / AbrB like domain 
CLJU_RS00790	SM00873	B3/4 domain
CLJU_RS00810	SM00047	Lysozyme subfamily 2
CLJU_RS00835	SM00986	Uracil DNA glycosylase superfamily
CLJU_RS00835	SM00987	UreE urease accessory protein, C-terminal domain 
CLJU_RS00850	SM01208	CLJU_RS00850
CLJU_RS00855	SM00493	CLJU_RS00855
CLJU_RS00860	SM00650	Ribosomal RNA adenine dimethylases
CLJU_RS00905	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLJU_RS00915	SM00646	CLJU_RS00915
CLJU_RS00925	SM00354	helix_turn _helix lactose operon repressor
CLJU_RS00945	SM00465	GIY-YIG type nucleases (URI domain)
CLJU_RS00960	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS01015	SM00257	Lysin motif
CLJU_RS01085	SM00357	Cold shock protein domain
CLJU_RS01085	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS01085	SM00959	Rho termination factor, N-terminal domain
CLJU_RS01105	SM00937	CLJU_RS01105
CLJU_RS01125	SM00226	Low molecular weight phosphatase family
CLJU_RS01190	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS01265	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS01285	SM00957	SecA DEAD-like domain
CLJU_RS01285	SM00958	SecA preprotein cross-linking domain
CLJU_RS01290	SM00937	CLJU_RS01290
CLJU_RS01300	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CLJU_RS01310	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS01310	SM00732	Likely ribonuclease with RNase H fold.
CLJU_RS01340	SM00954	Region found in RelA / SpoT proteins
CLJU_RS01360	SM00271	DnaJ molecular chaperone homology domain
CLJU_RS01370	SM01118	CLJU_RS01370
CLJU_RS01395	SM01001	AIR carboxylase
CLJU_RS01405	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS01405	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS01415	SM00091	PAS domain
CLJU_RS01415	SM00331	Sigma factor PP2C-like phosphatases
CLJU_RS01435	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS01440	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CLJU_RS01450	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS01455	SM00924	MgtE intracellular N domain
CLJU_RS01500	SM00861	Transketolase, pyrimidine binding domain
CLJU_RS01505	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS01515	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS01515	SM00245	tail specific protease
CLJU_RS01520	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS01525	SM00487	DEAD-like helicases superfamily
CLJU_RS01525	SM00490	helicase superfamily c-terminal domain
CLJU_RS01530	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS01535	SM00240	Forkhead associated domain
CLJU_RS01555	SM00465	GIY-YIG type nucleases (URI domain)
CLJU_RS01585	SM00481	DNA polymerase alpha chain like domain
CLJU_RS01625	SM00487	DEAD-like helicases superfamily
CLJU_RS01655	SM00482	DNA polymerase A domain
CLJU_RS01660	SM01040	BRO family, N-terminal domain
CLJU_RS01675	SM00990	CLJU_RS01675
CLJU_RS01680	SM00487	DEAD-like helicases superfamily
CLJU_RS01695	SM00507	HNH nucleases
CLJU_RS01700	SM00470	ParB-like nuclease domain
CLJU_RS01825	SM00287	Bacterial SH3 domain homologues
CLJU_RS01825	SM00644	CLJU_RS01825
CLJU_RS01835	SM00857	Resolvase, N terminal domain
CLJU_RS01840	SM00857	Resolvase, N terminal domain
CLJU_RS01875	SM01130	CLJU_RS01875
CLJU_RS01915	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS01930	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS01960	SM00267	diguanylate cyclase
CLJU_RS01980	SM00938	Nitrogen regulatory protein P-II
CLJU_RS01985	SM00981	CLJU_RS01985
CLJU_RS02010	SM00487	DEAD-like helicases superfamily
CLJU_RS02010	SM00490	helicase superfamily c-terminal domain
CLJU_RS02025	SM00344	helix_turn_helix ASNC type
CLJU_RS02030	SM00919	Malic enzyme, NAD binding domain
CLJU_RS02030	SM01274	CLJU_RS02030
CLJU_RS02045	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS02095	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS02100	SM01130	CLJU_RS02100
CLJU_RS02125	SM00763	PrkA AAA domain
CLJU_RS02130	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS02150	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CLJU_RS02155	SM00851	MGS-like domain
CLJU_RS02155	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CLJU_RS02165	SM00387	Histidine kinase-like ATPases
CLJU_RS02165	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS02170	SM00448	cheY-homologous receiver domain
CLJU_RS02170	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS02225	SM00028	Tetratricopeptide repeats
CLJU_RS02230	SM00387	Histidine kinase-like ATPases
CLJU_RS02230	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS02240	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS02245	SM00448	cheY-homologous receiver domain
CLJU_RS02245	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS02250	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS02250	SM00930	CLJU_RS02250
CLJU_RS02265	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS02280	SM00257	Lysin motif
CLJU_RS02295	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS02335	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS02340	SM00387	Histidine kinase-like ATPases
CLJU_RS02340	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS02380	SM00257	Lysin motif
CLJU_RS02390	SM01264	CLJU_RS02390
CLJU_RS02405	SM00938	Nitrogen regulatory protein P-II
CLJU_RS02410	SM00938	Nitrogen regulatory protein P-II
CLJU_RS02430	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS02455	SM00448	cheY-homologous receiver domain
CLJU_RS02455	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS02460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS02460	SM00387	Histidine kinase-like ATPases
CLJU_RS02460	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS02470	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS02710	SM00858	CLJU_RS02710
CLJU_RS02750	SM00052	Putative diguanylate phosphodiesterase
CLJU_RS02750	SM00267	diguanylate cyclase
CLJU_RS02770	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS02780	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS02800	SM00327	von Willebrand factor (vWF) type A domain
CLJU_RS02815	SM00327	von Willebrand factor (vWF) type A domain
CLJU_RS02850	SM01324	CLJU_RS02850
CLJU_RS02865	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS02920	SM00506	Appr-1"-p processing enzyme
CLJU_RS02965	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS02970	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS02970	SM00245	tail specific protease
CLJU_RS02995	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS03005	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03020	SM00028	Tetratricopeptide repeats
CLJU_RS03020	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS03025	SM00028	Tetratricopeptide repeats
CLJU_RS03030	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03030	SM01086	C-terminal, D2-small domain, of ClpB protein
CLJU_RS03085	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03085	SM00930	CLJU_RS03085
CLJU_RS03125	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS03130	SM00905	Dihydroneopterin aldolase
CLJU_RS03155	SM00327	von Willebrand factor (vWF) type A domain
CLJU_RS03190	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03195	SM00387	Histidine kinase-like ATPases
CLJU_RS03195	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS03200	SM00448	cheY-homologous receiver domain
CLJU_RS03200	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS03240	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS03245	SM00563	Phosphate acyltransferases
CLJU_RS03260	SM01329	CLJU_RS03260
CLJU_RS03270	SM01018	B12 binding domain
CLJU_RS03280	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS03280	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CLJU_RS03290	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03310	SM00344	helix_turn_helix ASNC type
CLJU_RS03325	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS03325	SM00866	CLJU_RS03325
CLJU_RS03375	SM00257	Lysin motif
CLJU_RS03375	SM00631	CLJU_RS03375
CLJU_RS03385	SM00831	Cation transporter/ATPase, N-terminus
CLJU_RS03390	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS03410	SM00244	prohibitin homologues
CLJU_RS03415	SM00448	cheY-homologous receiver domain
CLJU_RS03415	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS03420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS03420	SM00387	Histidine kinase-like ATPases
CLJU_RS03420	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS03435	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CLJU_RS03445	SM00852	Probable molybdopterin binding domain
CLJU_RS03465	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLJU_RS03480	SM00902	Iron hydrogenase small subunit
CLJU_RS03490	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS03595	SM00851	MGS-like domain
CLJU_RS03610	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS03650	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS03670	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CLJU_RS03700	SM01018	B12 binding domain
CLJU_RS03725	SM01018	B12 binding domain
CLJU_RS03780	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03790	SM00448	cheY-homologous receiver domain
CLJU_RS03790	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS03795	SM00387	Histidine kinase-like ATPases
CLJU_RS03795	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS03800	SM00100	Cyclic nucleotide-monophosphate binding domain
CLJU_RS03810	SM00448	cheY-homologous receiver domain
CLJU_RS03810	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS03815	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03825	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS03835	SM00387	Histidine kinase-like ATPases
CLJU_RS03835	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS03845	SM00448	cheY-homologous receiver domain
CLJU_RS03845	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS03855	SM00387	Histidine kinase-like ATPases
CLJU_RS03855	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS03870	SM00831	Cation transporter/ATPase, N-terminus
CLJU_RS03905	SM00838	Elongation factor G C-terminus
CLJU_RS03910	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS03930	SM00271	DnaJ molecular chaperone homology domain
CLJU_RS03945	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS03975	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS03985	SM00014	Acid phosphatase homologues
CLJU_RS04005	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS04045	SM00400	zinc finger
CLJU_RS04045	SM00493	CLJU_RS04045
CLJU_RS04125	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS04145	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS04150	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS04205	SM01001	AIR carboxylase
CLJU_RS04230	SM00798	AICARFT/IMPCHase bienzyme
CLJU_RS04230	SM00851	MGS-like domain
CLJU_RS04235	SM01209	CLJU_RS04235
CLJU_RS04235	SM01210	CLJU_RS04235
CLJU_RS04250	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS04280	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLJU_RS04285	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CLJU_RS04290	SM00422	helix_turn_helix, mercury resistance
CLJU_RS04345	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS04355	SM00448	cheY-homologous receiver domain
CLJU_RS04355	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS04365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS04385	SM00155	Phospholipase D. Active site motifs.
CLJU_RS04395	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS04400	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS04405	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CLJU_RS04430	SM00460	Transglutaminase/protease-like homologues
CLJU_RS04460	SM00917	LeuA allosteric (dimerisation) domain
CLJU_RS04475	SM01329	CLJU_RS04475
CLJU_RS04495	SM00487	DEAD-like helicases superfamily
CLJU_RS04495	SM00490	helicase superfamily c-terminal domain
CLJU_RS04505	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS04520	SM00448	cheY-homologous receiver domain
CLJU_RS04520	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS04525	SM00387	Histidine kinase-like ATPases
CLJU_RS04525	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS04530	SM00387	Histidine kinase-like ATPases
CLJU_RS04530	SM00433	TopoisomeraseII
CLJU_RS04535	SM00434	DNA Topoisomerase IV
CLJU_RS04590	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS04590	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS04605	SM00890	Domain of unknown function
CLJU_RS04625	SM01245	CLJU_RS04625
CLJU_RS04630	SM00260	Two component signalling adaptor domain
CLJU_RS04640	SM00448	cheY-homologous receiver domain
CLJU_RS04645	SM00138	Methyltransferase, chemotaxis proteins 
CLJU_RS04650	SM00073	Histidine Phosphotransfer domain
CLJU_RS04650	SM00260	Two component signalling adaptor domain
CLJU_RS04650	SM00387	Histidine kinase-like ATPases
CLJU_RS04650	SM01231	CLJU_RS04650
CLJU_RS04660	SM00448	cheY-homologous receiver domain
CLJU_RS04665	SM00260	Two component signalling adaptor domain
CLJU_RS04755	SM00028	Tetratricopeptide repeats
CLJU_RS04795	SM00028	Tetratricopeptide repeats
CLJU_RS04805	SM00028	Tetratricopeptide repeats
CLJU_RS04880	SM00028	Tetratricopeptide repeats
CLJU_RS04985	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS05030	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05095	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05095	SM00962	SRP54-type protein, GTPase domain
CLJU_RS05135	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS05135	SM01131	CLJU_RS05135
CLJU_RS05140	SM00831	Cation transporter/ATPase, N-terminus
CLJU_RS05265	SM00363	S4 RNA-binding domain
CLJU_RS05310	SM00100	Cyclic nucleotide-monophosphate binding domain
CLJU_RS05310	SM00419	helix_turn_helix, cAMP Regulatory protein
CLJU_RS05330	SM00387	Histidine kinase-like ATPases
CLJU_RS05340	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05395	SM00841	Elongation factor P, C-terminal
CLJU_RS05395	SM01185	CLJU_RS05395
CLJU_RS05405	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05470	SM00861	Transketolase, pyrimidine binding domain
CLJU_RS05475	SM00363	S4 RNA-binding domain
CLJU_RS05495	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS05500	SM00448	cheY-homologous receiver domain
CLJU_RS05525	SM00936	Penicillin-binding protein 5, C-terminal domain 
CLJU_RS05555	SM00936	Penicillin-binding protein 5, C-terminal domain 
CLJU_RS05580	SM00900	CLJU_RS05580
CLJU_RS05650	SM00422	helix_turn_helix, mercury resistance
CLJU_RS05660	SM01211	CLJU_RS05660
CLJU_RS05685	SM01350	CLJU_RS05685
CLJU_RS05710	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS05710	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS05775	SM00448	cheY-homologous receiver domain
CLJU_RS05775	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS05780	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS05780	SM00387	Histidine kinase-like ATPases
CLJU_RS05780	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS05815	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS05815	SM00448	cheY-homologous receiver domain
CLJU_RS05820	SM00387	Histidine kinase-like ATPases
CLJU_RS05825	SM00877	CLJU_RS05825
CLJU_RS05850	SM00877	CLJU_RS05850
CLJU_RS05865	SM00877	CLJU_RS05865
CLJU_RS05880	SM00877	CLJU_RS05880
CLJU_RS05885	SM00877	CLJU_RS05885
CLJU_RS05890	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05895	SM01005	Alanine racemase, C-terminal domain
CLJU_RS05900	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS05920	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05925	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS05960	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CLJU_RS05970	SM00732	Likely ribonuclease with RNase H fold.
CLJU_RS05985	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS05995	SM00838	Elongation factor G C-terminus
CLJU_RS06020	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06030	SM00842	Cell division protein FtsA
CLJU_RS06035	SM00864	Tubulin/FtsZ family, GTPase domain
CLJU_RS06035	SM00865	Tubulin/FtsZ family, C-terminal domain
CLJU_RS06070	SM00448	cheY-homologous receiver domain
CLJU_RS06070	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS06075	SM00091	PAS domain
CLJU_RS06075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS06075	SM00387	Histidine kinase-like ATPases
CLJU_RS06075	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS06095	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06120	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06145	SM00072	Guanylate kinase homologues.
CLJU_RS06150	SM01409	CLJU_RS06150
CLJU_RS06160	SM00487	DEAD-like helicases superfamily
CLJU_RS06160	SM00490	helicase superfamily c-terminal domain
CLJU_RS06190	SM00331	Sigma factor PP2C-like phosphatases
CLJU_RS06190	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CLJU_RS06195	SM00220	Serine/Threonine protein kinases, catalytic domain
CLJU_RS06195	SM00740	CLJU_RS06195
CLJU_RS06210	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CLJU_RS06225	SM01120	CLJU_RS06225
CLJU_RS06225	SM01121	CLJU_RS06225
CLJU_RS06230	SM00487	DEAD-like helicases superfamily
CLJU_RS06230	SM00490	helicase superfamily c-terminal domain
CLJU_RS06290	SM00358	Double-stranded RNA binding motif
CLJU_RS06290	SM00535	Ribonuclease III family
CLJU_RS06295	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS06300	SM00968	SMC proteins Flexible Hinge Domain
CLJU_RS06305	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06305	SM00962	SRP54-type protein, GTPase domain
CLJU_RS06305	SM00963	SRP54-type protein, helical bundle domain
CLJU_RS06315	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06315	SM00962	SRP54-type protein, GTPase domain
CLJU_RS06315	SM00963	SRP54-type protein, helical bundle domain
CLJU_RS06370	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06380	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CLJU_RS06380	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CLJU_RS06380	SM00493	CLJU_RS06380
CLJU_RS06425	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS06440	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS06475	SM00904	Riboflavin kinase
CLJU_RS06480	SM01387	CLJU_RS06480
CLJU_RS06485	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS06485	SM00322	K homology RNA-binding domain
CLJU_RS06505	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06505	SM00843	CLJU_RS06505
CLJU_RS06510	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS06520	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06525	SM00322	K homology RNA-binding domain
CLJU_RS06525	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS06565	SM00998	Adenylosuccinate lyase C-terminus
CLJU_RS06580	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CLJU_RS06605	SM00448	cheY-homologous receiver domain
CLJU_RS06610	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS06610	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS06650	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS06675	SM00346	helix_turn_helix isocitrate lyase regulation
CLJU_RS06710	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS06725	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS06755	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS06755	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS06760	SM00387	Histidine kinase-like ATPases
CLJU_RS06760	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS06765	SM00448	cheY-homologous receiver domain
CLJU_RS06765	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS06770	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS06785	SM00448	cheY-homologous receiver domain
CLJU_RS06785	SM00850	LytTr DNA-binding domain
CLJU_RS06790	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS06790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS06805	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS06815	SM00893	Electron transfer flavoprotein domain
CLJU_RS06820	SM00893	Electron transfer flavoprotein domain
CLJU_RS06830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS06830	SM00895	CLJU_RS06830
CLJU_RS06855	SM00899	CLJU_RS06855
CLJU_RS06860	SM00899	CLJU_RS06860
CLJU_RS06895	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS06900	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS06920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS06920	SM01049	CLJU_RS06920
CLJU_RS06925	SM00422	helix_turn_helix, mercury resistance
CLJU_RS06930	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS06950	SM00448	cheY-homologous receiver domain
CLJU_RS06950	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS06955	SM00387	Histidine kinase-like ATPases
CLJU_RS06970	SM00422	helix_turn_helix, mercury resistance
CLJU_RS06985	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07015	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07050	SM00387	Histidine kinase-like ATPases
CLJU_RS07050	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS07055	SM00448	cheY-homologous receiver domain
CLJU_RS07055	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS07060	SM00448	cheY-homologous receiver domain
CLJU_RS07060	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS07065	SM00387	Histidine kinase-like ATPases
CLJU_RS07075	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07105	SM00910	CLJU_RS07105
CLJU_RS07175	SM00226	Low molecular weight phosphatase family
CLJU_RS07185	SM00052	Putative diguanylate phosphodiesterase
CLJU_RS07185	SM00267	diguanylate cyclase
CLJU_RS07190	SM00487	DEAD-like helicases superfamily
CLJU_RS07190	SM00490	helicase superfamily c-terminal domain
CLJU_RS07200	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS07205	SM00902	Iron hydrogenase small subunit
CLJU_RS07205	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CLJU_RS07210	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CLJU_RS07220	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS07250	SM00052	Putative diguanylate phosphodiesterase
CLJU_RS07250	SM00267	diguanylate cyclase
CLJU_RS07255	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS07255	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS07270	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS07270	SM00267	diguanylate cyclase
CLJU_RS07270	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS07290	SM00422	helix_turn_helix, mercury resistance
CLJU_RS07340	SM00448	cheY-homologous receiver domain
CLJU_RS07340	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS07345	SM00387	Histidine kinase-like ATPases
CLJU_RS07345	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS07375	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLJU_RS07375	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLJU_RS07390	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07430	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS07435	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07440	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07460	SM00871	Bacterial transcription activator, effector binding domain
CLJU_RS07470	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS07555	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS07570	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS07575	SM00448	cheY-homologous receiver domain
CLJU_RS07575	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS07580	SM00387	Histidine kinase-like ATPases
CLJU_RS07580	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS07590	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07600	SM00422	helix_turn_helix, mercury resistance
CLJU_RS07605	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS07605	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS07615	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CLJU_RS07665	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLJU_RS07675	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS07690	SM00093	SERine  Proteinase INhibitors
CLJU_RS07715	SM00267	diguanylate cyclase
CLJU_RS07715	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS07730	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLJU_RS07730	SM01134	CLJU_RS07730
CLJU_RS07745	SM00448	cheY-homologous receiver domain
CLJU_RS07745	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS07750	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS07750	SM00387	Histidine kinase-like ATPases
CLJU_RS07750	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS07755	SM00014	Acid phosphatase homologues
CLJU_RS07825	SM00014	Acid phosphatase homologues
CLJU_RS07835	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS07835	SM00924	MgtE intracellular N domain
CLJU_RS07915	SM00829	Enoylreductase
CLJU_RS07965	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS07985	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS07990	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS08000	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS08025	SM00448	cheY-homologous receiver domain
CLJU_RS08025	SM00850	LytTr DNA-binding domain
CLJU_RS08045	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CLJU_RS08145	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS08210	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS08295	SM00635	Bacterial Ig-like domain 2
CLJU_RS08325	SM00014	Acid phosphatase homologues
CLJU_RS08395	SM00852	Probable molybdopterin binding domain
CLJU_RS08420	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS08455	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS08485	SM00902	Iron hydrogenase small subunit
CLJU_RS08500	SM00448	cheY-homologous receiver domain
CLJU_RS08500	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS08505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS08505	SM00387	Histidine kinase-like ATPases
CLJU_RS08505	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS08510	SM00842	Cell division protein FtsA
CLJU_RS08520	SM00363	S4 RNA-binding domain
CLJU_RS08555	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS08565	SM00871	Bacterial transcription activator, effector binding domain
CLJU_RS08575	SM00421	helix_turn_helix, Lux Regulon
CLJU_RS08585	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS08595	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS08615	SM00873	B3/4 domain
CLJU_RS08655	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS08660	SM00267	diguanylate cyclase
CLJU_RS08675	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS08770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS08775	SM00448	cheY-homologous receiver domain
CLJU_RS08810	SM00877	CLJU_RS08810
CLJU_RS08820	SM00852	Probable molybdopterin binding domain
CLJU_RS08825	SM00267	diguanylate cyclase
CLJU_RS08825	SM00897	FIST N domain
CLJU_RS08825	SM01204	CLJU_RS08825
CLJU_RS08830	SM00422	helix_turn_helix, mercury resistance
CLJU_RS08830	SM00871	Bacterial transcription activator, effector binding domain
CLJU_RS08855	SM00287	Bacterial SH3 domain homologues
CLJU_RS08865	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS08875	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS08890	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS08910	SM01133	CLJU_RS08910
CLJU_RS08925	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CLJU_RS08995	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09000	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS09010	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09080	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS09085	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS09095	SM00857	Resolvase, N terminal domain
CLJU_RS09130	SM00052	Putative diguanylate phosphodiesterase
CLJU_RS09130	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CLJU_RS09130	SM00267	diguanylate cyclase
CLJU_RS09160	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS09200	SM00636	CLJU_RS09200
CLJU_RS09240	SM00448	cheY-homologous receiver domain
CLJU_RS09255	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS09260	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS09265	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09270	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09325	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09350	SM00490	helicase superfamily c-terminal domain
CLJU_RS09370	SM01018	B12 binding domain
CLJU_RS09385	SM00479	CLJU_RS09385
CLJU_RS09455	SM00421	helix_turn_helix, Lux Regulon
CLJU_RS09495	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS09505	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS09530	SM00448	cheY-homologous receiver domain
CLJU_RS09530	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS09535	SM00387	Histidine kinase-like ATPases
CLJU_RS09535	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS09545	SM00903	Flavin reductase like domain
CLJU_RS09555	SM00357	Cold shock protein domain
CLJU_RS09595	SM00357	Cold shock protein domain
CLJU_RS09605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS09620	SM00387	Histidine kinase-like ATPases
CLJU_RS09620	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS09625	SM00448	cheY-homologous receiver domain
CLJU_RS09625	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS09630	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09680	SM00897	FIST N domain
CLJU_RS09680	SM01204	CLJU_RS09680
CLJU_RS09685	SM00387	Histidine kinase-like ATPases
CLJU_RS09685	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS09685	SM00448	cheY-homologous receiver domain
CLJU_RS09690	SM00387	Histidine kinase-like ATPases
CLJU_RS09710	SM00448	cheY-homologous receiver domain
CLJU_RS09710	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS09715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS09715	SM00387	Histidine kinase-like ATPases
CLJU_RS09715	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS09725	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS09735	SM00060	Fibronectin type 3 domain
CLJU_RS09735	SM00636	CLJU_RS09735
CLJU_RS09745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS09765	SM00422	helix_turn_helix, mercury resistance
CLJU_RS09775	SM00387	Histidine kinase-like ATPases
CLJU_RS09785	SM00954	Region found in RelA / SpoT proteins
CLJU_RS09790	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS09845	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09865	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CLJU_RS09870	SM00091	PAS domain
CLJU_RS09870	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09875	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09890	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09895	SM00852	Probable molybdopterin binding domain
CLJU_RS09900	SM00852	Probable molybdopterin binding domain
CLJU_RS09910	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09915	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
CLJU_RS09930	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS09945	SM00518	AP endonuclease family 2
CLJU_RS09975	SM00893	Electron transfer flavoprotein domain
CLJU_RS09980	SM00893	Electron transfer flavoprotein domain
CLJU_RS09995	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS10035	SM00878	Biotin carboxylase C-terminal domain
CLJU_RS10050	SM00796	Allophanate hydrolase subunit 1
CLJU_RS10055	SM00797	Allophanate hydrolase subunit 2
CLJU_RS10095	SM01018	B12 binding domain
CLJU_RS10120	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLJU_RS10120	SM01134	CLJU_RS10120
CLJU_RS10150	SM01018	B12 binding domain
CLJU_RS10165	SM01018	B12 binding domain
CLJU_RS10185	SM01018	B12 binding domain
CLJU_RS10200	SM00448	cheY-homologous receiver domain
CLJU_RS10205	SM00387	Histidine kinase-like ATPases
CLJU_RS10255	SM00267	diguanylate cyclase
CLJU_RS10255	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS10335	SM00344	helix_turn_helix ASNC type
CLJU_RS10350	SM01018	B12 binding domain
CLJU_RS10425	SM00853	MutL C terminal dimerisation domain
CLJU_RS10425	SM01340	CLJU_RS10425
CLJU_RS10430	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLJU_RS10430	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLJU_RS10435	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS10465	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS10485	SM00363	S4 RNA-binding domain
CLJU_RS10520	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS10520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS10550	SM00028	Tetratricopeptide repeats
CLJU_RS10550	SM01043	Bacterial transcriptional activator domain
CLJU_RS10555	SM01221	CLJU_RS10555
CLJU_RS10555	SM01222	CLJU_RS10555
CLJU_RS10575	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CLJU_RS10580	SM00487	DEAD-like helicases superfamily
CLJU_RS10580	SM00490	helicase superfamily c-terminal domain
CLJU_RS10595	SM00893	Electron transfer flavoprotein domain
CLJU_RS10600	SM00893	Electron transfer flavoprotein domain
CLJU_RS10615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS10615	SM00895	CLJU_RS10615
CLJU_RS10630	SM00899	CLJU_RS10630
CLJU_RS10640	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS10650	SM00836	DALR anticodon binding domain
CLJU_RS10650	SM01016	Arginyl tRNA synthetase N terminal dom
CLJU_RS10680	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS10695	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLJU_RS10710	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLJU_RS10710	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLJU_RS10735	SM00481	DNA polymerase alpha chain like domain
CLJU_RS10770	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS10795	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS10805	SM00770	Zinc dependent phospholipase C (alpha toxin)
CLJU_RS10845	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS10845	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS10850	SM00260	Two component signalling adaptor domain
CLJU_RS10855	SM00073	Histidine Phosphotransfer domain
CLJU_RS10855	SM00260	Two component signalling adaptor domain
CLJU_RS10855	SM00387	Histidine kinase-like ATPases
CLJU_RS10855	SM01231	CLJU_RS10855
CLJU_RS10860	SM00448	cheY-homologous receiver domain
CLJU_RS10870	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS10885	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLJU_RS10900	SM00798	AICARFT/IMPCHase bienzyme
CLJU_RS10955	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11065	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11100	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11105	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11135	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11140	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11160	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11200	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS11210	SM00877	CLJU_RS11210
CLJU_RS11230	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS11255	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS11255	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS11270	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS11270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS11275	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11290	SM00448	cheY-homologous receiver domain
CLJU_RS11290	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS11295	SM00387	Histidine kinase-like ATPases
CLJU_RS11295	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS11305	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CLJU_RS11305	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CLJU_RS11305	SM00493	CLJU_RS11305
CLJU_RS11310	SM00487	DEAD-like helicases superfamily
CLJU_RS11310	SM00490	helicase superfamily c-terminal domain
CLJU_RS11325	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS11385	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS11425	SM00829	Enoylreductase
CLJU_RS11430	SM00091	PAS domain
CLJU_RS11430	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11440	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11460	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS11465	SM00421	helix_turn_helix, Lux Regulon
CLJU_RS11470	SM00327	von Willebrand factor (vWF) type A domain
CLJU_RS11470	SM00609	Vault protein Inter-alpha-Trypsin domain
CLJU_RS11540	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CLJU_RS11540	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CLJU_RS11540	SM00493	CLJU_RS11540
CLJU_RS11600	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLJU_RS11610	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CLJU_RS11670	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CLJU_RS11695	SM00100	Cyclic nucleotide-monophosphate binding domain
CLJU_RS11695	SM00419	helix_turn_helix, cAMP Regulatory protein
CLJU_RS11745	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CLJU_RS11755	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLJU_RS11760	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLJU_RS11790	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11795	SM00855	Phosphoglycerate mutase family
CLJU_RS11830	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLJU_RS11835	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS11845	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS11870	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLJU_RS11875	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS12035	SM00093	SERine  Proteinase INhibitors
CLJU_RS12060	SM00900	CLJU_RS12060
CLJU_RS12100	SM01266	CLJU_RS12100
CLJU_RS12135	SM00838	Elongation factor G C-terminus
CLJU_RS12135	SM00889	Elongation factor G, domain IV
CLJU_RS12145	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12150	SM00850	LytTr DNA-binding domain
CLJU_RS12180	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12180	SM01086	C-terminal, D2-small domain, of ClpB protein
CLJU_RS12200	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS12200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS12215	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS12240	SM00091	PAS domain
CLJU_RS12240	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12245	SM00829	Enoylreductase
CLJU_RS12250	SM00091	PAS domain
CLJU_RS12250	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12320	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS12320	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CLJU_RS12345	SM00852	Probable molybdopterin binding domain
CLJU_RS12360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS12360	SM00387	Histidine kinase-like ATPases
CLJU_RS12360	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS12365	SM00448	cheY-homologous receiver domain
CLJU_RS12365	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS12375	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS12420	SM00851	MGS-like domain
CLJU_RS12420	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CLJU_RS12420	SM01209	CLJU_RS12420
CLJU_RS12425	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CLJU_RS12445	SM00341	Helicase and RNase D C-terminal
CLJU_RS12445	SM00487	DEAD-like helicases superfamily
CLJU_RS12445	SM00490	helicase superfamily c-terminal domain
CLJU_RS12445	SM00956	CLJU_RS12445
CLJU_RS12490	SM00764	Citrate lyase ligase C-terminal domain
CLJU_RS12495	SM00919	Malic enzyme, NAD binding domain
CLJU_RS12495	SM01274	CLJU_RS12495
CLJU_RS12515	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12535	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CLJU_RS12570	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS12595	SM00387	Histidine kinase-like ATPases
CLJU_RS12630	SM00422	helix_turn_helix, mercury resistance
CLJU_RS12645	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS12645	SM00387	Histidine kinase-like ATPases
CLJU_RS12645	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS12665	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12670	SM00448	cheY-homologous receiver domain
CLJU_RS12670	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS12685	SM00448	cheY-homologous receiver domain
CLJU_RS12685	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS12690	SM00387	Histidine kinase-like ATPases
CLJU_RS12695	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12715	SM00829	Enoylreductase
CLJU_RS12720	SM00861	Transketolase, pyrimidine binding domain
CLJU_RS12730	SM00829	Enoylreductase
CLJU_RS12745	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS12755	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12780	SM01059	Chloramphenicol acetyltransferase
CLJU_RS12850	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLJU_RS12850	SM01134	CLJU_RS12850
CLJU_RS12855	SM00267	diguanylate cyclase
CLJU_RS12880	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12915	SM00344	helix_turn_helix ASNC type
CLJU_RS12920	SM00422	helix_turn_helix, mercury resistance
CLJU_RS12925	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12930	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12940	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLJU_RS12940	SM01134	CLJU_RS12940
CLJU_RS12945	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS12970	SM00855	Phosphoglycerate mutase family
CLJU_RS13000	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS13040	SM00850	LytTr DNA-binding domain
CLJU_RS13065	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13135	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS13155	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS13160	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13195	SM00422	helix_turn_helix, mercury resistance
CLJU_RS13220	SM00267	diguanylate cyclase
CLJU_RS13240	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13245	SM00966	SpoVT / AbrB like domain 
CLJU_RS13265	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS13325	SM00387	Histidine kinase-like ATPases
CLJU_RS13325	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS13330	SM00448	cheY-homologous receiver domain
CLJU_RS13330	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS13340	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13350	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLJU_RS13365	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS13375	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13395	SM00448	cheY-homologous receiver domain
CLJU_RS13395	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS13400	SM00387	Histidine kinase-like ATPases
CLJU_RS13400	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS13405	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13510	SM00267	diguanylate cyclase
CLJU_RS13520	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS13525	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS13570	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS13590	SM00387	Histidine kinase-like ATPases
CLJU_RS13595	SM00793	Accessory gene regulator B
CLJU_RS13640	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS13650	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13655	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CLJU_RS13670	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS13845	SM00448	cheY-homologous receiver domain
CLJU_RS13855	SM00448	cheY-homologous receiver domain
CLJU_RS13860	SM00387	Histidine kinase-like ATPases
CLJU_RS13870	SM00257	Lysin motif
CLJU_RS13870	SM00636	CLJU_RS13870
CLJU_RS13880	SM00858	CLJU_RS13880
CLJU_RS13895	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CLJU_RS13910	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CLJU_RS13940	SM01130	CLJU_RS13940
CLJU_RS13965	SM00267	diguanylate cyclase
CLJU_RS13970	SM00331	Sigma factor PP2C-like phosphatases
CLJU_RS13995	SM00981	CLJU_RS13995
CLJU_RS14010	SM00914	CLJU_RS14010
CLJU_RS14035	SM01091	Transporter associated domain
CLJU_RS14060	SM00793	Accessory gene regulator B
CLJU_RS14065	SM00387	Histidine kinase-like ATPases
CLJU_RS14080	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS14105	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS14130	SM01117	CLJU_RS14130
CLJU_RS14220	SM00448	cheY-homologous receiver domain
CLJU_RS14225	SM00257	Lysin motif
CLJU_RS14225	SM00858	CLJU_RS14225
CLJU_RS14245	SM00421	helix_turn_helix, Lux Regulon
CLJU_RS14245	SM00448	cheY-homologous receiver domain
CLJU_RS14250	SM00387	Histidine kinase-like ATPases
CLJU_RS14280	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS14290	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS14310	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS14325	SM00155	Phospholipase D. Active site motifs.
CLJU_RS14370	SM00830	Chorismate mutase type II
CLJU_RS14400	SM00287	Bacterial SH3 domain homologues
CLJU_RS14405	SM00448	cheY-homologous receiver domain
CLJU_RS14415	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS14415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS14435	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS14475	SM00890	Domain of unknown function
CLJU_RS14480	SM00060	Fibronectin type 3 domain
CLJU_RS14485	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS14490	SM00346	helix_turn_helix isocitrate lyase regulation
CLJU_RS14515	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS14545	SM00450	Rhodanese Homology Domain
CLJU_RS14560	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLJU_RS14575	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLJU_RS14595	SM00448	cheY-homologous receiver domain
CLJU_RS14595	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS14600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS14600	SM00387	Histidine kinase-like ATPases
CLJU_RS14600	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS14655	SM00670	Large family of predicted nucleotide-binding domains
CLJU_RS14760	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CLJU_RS14770	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLJU_RS14795	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS14810	SM00641	Glycosyl hydrolases family 25
CLJU_RS14820	SM00448	cheY-homologous receiver domain
CLJU_RS14825	SM00387	Histidine kinase-like ATPases
CLJU_RS14825	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS14825	SM00448	cheY-homologous receiver domain
CLJU_RS14830	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS14835	SM00448	cheY-homologous receiver domain
CLJU_RS14835	SM00850	LytTr DNA-binding domain
CLJU_RS14860	SM00387	Histidine kinase-like ATPases
CLJU_RS14860	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS14865	SM00448	cheY-homologous receiver domain
CLJU_RS14865	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS14875	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS14925	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CLJU_RS14995	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS15010	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS15045	SM00919	Malic enzyme, NAD binding domain
CLJU_RS15045	SM01274	CLJU_RS15045
CLJU_RS15050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS15050	SM00895	CLJU_RS15050
CLJU_RS15075	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS15090	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS15100	SM00954	Region found in RelA / SpoT proteins
CLJU_RS15105	SM00448	cheY-homologous receiver domain
CLJU_RS15105	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS15110	SM00387	Histidine kinase-like ATPases
CLJU_RS15110	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS15120	SM00052	Putative diguanylate phosphodiesterase
CLJU_RS15120	SM00091	PAS domain
CLJU_RS15120	SM00267	diguanylate cyclase
CLJU_RS15130	SM00267	diguanylate cyclase
CLJU_RS15135	SM00479	CLJU_RS15135
CLJU_RS15135	SM00481	DNA polymerase alpha chain like domain
CLJU_RS15275	SM00267	diguanylate cyclase
CLJU_RS15290	SM00873	B3/4 domain
CLJU_RS15325	SM00646	CLJU_RS15325
CLJU_RS15540	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS15555	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS15590	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS15635	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS15640	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS15665	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS15750	SM01004	Delta-aminolevulinic acid dehydratase
CLJU_RS15785	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS15800	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS15815	SM01301	CLJU_RS15815
CLJU_RS15825	SM01209	CLJU_RS15825
CLJU_RS15830	SM01005	Alanine racemase, C-terminal domain
CLJU_RS15845	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS15845	SM01027	Beta-Casp domain
CLJU_RS15890	SM00014	Acid phosphatase homologues
CLJU_RS16005	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS16015	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS16055	SM00644	CLJU_RS16055
CLJU_RS16055	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
CLJU_RS16150	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS16170	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS16205	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS16240	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS16245	SM00387	Histidine kinase-like ATPases
CLJU_RS16245	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS16250	SM00448	cheY-homologous receiver domain
CLJU_RS16250	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS16270	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS16320	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS16330	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS16330	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CLJU_RS16340	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS16350	SM00267	diguanylate cyclase
CLJU_RS16370	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS16385	SM00357	Cold shock protein domain
CLJU_RS16455	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS16505	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS16515	SM00481	DNA polymerase alpha chain like domain
CLJU_RS16565	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CLJU_RS16565	SM00475	5'-3' exonuclease
CLJU_RS16565	SM00482	DNA polymerase A domain
CLJU_RS16600	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS16605	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS16615	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS16615	SM00954	Region found in RelA / SpoT proteins
CLJU_RS16655	SM01323	CLJU_RS16655
CLJU_RS16670	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS16675	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CLJU_RS16685	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS16705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS16740	SM00387	Histidine kinase-like ATPases
CLJU_RS16810	SM00984	UDP binding domain
CLJU_RS16860	SM00028	Tetratricopeptide repeats
CLJU_RS16935	SM00529	Helix-turn-helix diphteria tox regulatory element
CLJU_RS16950	SM00463	Small MutS-related domain
CLJU_RS16950	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLJU_RS16950	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLJU_RS16965	SM00873	B3/4 domain
CLJU_RS16965	SM00874	tRNA synthetase B5 domain
CLJU_RS16965	SM00896	Ferredoxin-fold anticodon binding domain
CLJU_RS16975	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CLJU_RS16995	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CLJU_RS17040	SM01130	CLJU_RS17040
CLJU_RS17045	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CLJU_RS17185	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17225	SM00822	CLJU_RS17225
CLJU_RS17255	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS17330	SM00448	cheY-homologous receiver domain
CLJU_RS17330	SM00850	LytTr DNA-binding domain
CLJU_RS17340	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17385	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17390	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS17410	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17425	SM00028	Tetratricopeptide repeats
CLJU_RS17430	SM00460	Transglutaminase/protease-like homologues
CLJU_RS17445	SM00487	DEAD-like helicases superfamily
CLJU_RS17445	SM00490	helicase superfamily c-terminal domain
CLJU_RS17450	SM00903	Flavin reductase like domain
CLJU_RS17500	SM00855	Phosphoglycerate mutase family
CLJU_RS17540	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17540	SM00464	Found in ATP-dependent protease La (LON)
CLJU_RS17545	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17545	SM00994	ClpX C4-type zinc finger
CLJU_RS17545	SM01086	C-terminal, D2-small domain, of ClpB protein
CLJU_RS17585	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CLJU_RS17730	SM00422	helix_turn_helix, mercury resistance
CLJU_RS17785	SM00028	Tetratricopeptide repeats
CLJU_RS17810	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS17810	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS17825	SM00292	breast cancer carboxy-terminal domain
CLJU_RS17825	SM00479	CLJU_RS17825
CLJU_RS17835	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS17850	SM00091	PAS domain
CLJU_RS17850	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS17965	SM00990	CLJU_RS17965
CLJU_RS17985	SM00482	DNA polymerase A domain
CLJU_RS18040	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS18175	SM00845	GatB domain
CLJU_RS18195	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18205	SM00292	breast cancer carboxy-terminal domain
CLJU_RS18205	SM00532	Ligase N family
CLJU_RS18220	SM00363	S4 RNA-binding domain
CLJU_RS18240	SM00873	B3/4 domain
CLJU_RS18290	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS18305	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLJU_RS18305	SM01240	CLJU_RS18305
CLJU_RS18315	SM00883	Chaperonin 10 Kd subunit
CLJU_RS18330	SM00478	endonuclease III
CLJU_RS18340	SM00881	CoA binding domain
CLJU_RS18345	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18355	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18375	SM00448	cheY-homologous receiver domain
CLJU_RS18375	SM00850	LytTr DNA-binding domain
CLJU_RS18380	SM00387	Histidine kinase-like ATPases
CLJU_RS18395	SM01264	CLJU_RS18395
CLJU_RS18410	SM00878	Biotin carboxylase C-terminal domain
CLJU_RS18420	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18625	SM00903	Flavin reductase like domain
CLJU_RS18640	SM00903	Flavin reductase like domain
CLJU_RS18685	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18730	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18755	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18765	SM00062	Bacterial periplasmic substrate-binding proteins
CLJU_RS18800	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS18865	SM01068	Putative carbohydrate binding domain
CLJU_RS18880	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS18880	SM00876	Biotin and Thiamin Synthesis associated domain
CLJU_RS18890	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS18895	SM00946	Prolyl-tRNA synthetase, C-terminal
CLJU_RS18930	SM01301	CLJU_RS18930
CLJU_RS18940	SM00919	Malic enzyme, NAD binding domain
CLJU_RS18940	SM01274	CLJU_RS18940
CLJU_RS18945	SM00448	cheY-homologous receiver domain
CLJU_RS18950	SM00387	Histidine kinase-like ATPases
CLJU_RS18960	SM00873	B3/4 domain
CLJU_RS18980	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS19000	SM00829	Enoylreductase
CLJU_RS19025	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS19030	SM00387	Histidine kinase-like ATPases
CLJU_RS19035	SM00448	cheY-homologous receiver domain
CLJU_RS19035	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS19050	SM00448	cheY-homologous receiver domain
CLJU_RS19050	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS19055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS19055	SM00387	Histidine kinase-like ATPases
CLJU_RS19055	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS19080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS19080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS19200	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS19210	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLJU_RS19245	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS19245	SM00357	Cold shock protein domain
CLJU_RS19245	SM00955	CLJU_RS19245
CLJU_RS19255	SM01192	CLJU_RS19255
CLJU_RS19255	SM01193	CLJU_RS19255
CLJU_RS19275	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CLJU_RS19300	SM00646	CLJU_RS19300
CLJU_RS19330	SM00852	Probable molybdopterin binding domain
CLJU_RS19335	SM00478	endonuclease III
CLJU_RS19335	SM00525	CLJU_RS19335
CLJU_RS19340	SM00563	Phosphate acyltransferases
CLJU_RS19400	SM00893	Electron transfer flavoprotein domain
CLJU_RS19405	SM00893	Electron transfer flavoprotein domain
CLJU_RS19450	SM01329	CLJU_RS19450
CLJU_RS19455	SM00448	cheY-homologous receiver domain
CLJU_RS19455	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS19460	SM00387	Histidine kinase-like ATPases
CLJU_RS19460	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS19510	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS19545	SM00387	Histidine kinase-like ATPases
CLJU_RS19550	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS19550	SM00448	cheY-homologous receiver domain
CLJU_RS19555	SM00877	CLJU_RS19555
CLJU_RS19560	SM00877	CLJU_RS19560
CLJU_RS19575	SM00877	CLJU_RS19575
CLJU_RS19585	SM00877	CLJU_RS19585
CLJU_RS19600	SM00877	CLJU_RS19600
CLJU_RS19630	SM00877	CLJU_RS19630
CLJU_RS19635	SM00877	CLJU_RS19635
CLJU_RS19660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS19690	SM00387	Histidine kinase-like ATPases
CLJU_RS19695	SM00448	cheY-homologous receiver domain
CLJU_RS19695	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS19705	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS19730	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS19745	SM00422	helix_turn_helix, mercury resistance
CLJU_RS19755	SM00422	helix_turn_helix, mercury resistance
CLJU_RS19755	SM00871	Bacterial transcription activator, effector binding domain
CLJU_RS19765	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS19805	SM00893	Electron transfer flavoprotein domain
CLJU_RS19810	SM00893	Electron transfer flavoprotein domain
CLJU_RS19825	SM00387	Histidine kinase-like ATPases
CLJU_RS19825	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS19830	SM00448	cheY-homologous receiver domain
CLJU_RS19830	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS19890	SM01005	Alanine racemase, C-terminal domain
CLJU_RS19900	SM00091	PAS domain
CLJU_RS19900	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS19950	SM00028	Tetratricopeptide repeats
CLJU_RS19965	SM00028	Tetratricopeptide repeats
CLJU_RS19970	SM00764	Citrate lyase ligase C-terminal domain
CLJU_RS20020	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLJU_RS20030	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20040	SM00646	CLJU_RS20040
CLJU_RS20065	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20070	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20080	SM00662	RNA polymerases D
CLJU_RS20085	SM00363	S4 RNA-binding domain
CLJU_RS20085	SM01390	CLJU_RS20085
CLJU_RS20105	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS20160	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CLJU_RS20165	SM01374	CLJU_RS20165
CLJU_RS20185	SM00322	K homology RNA-binding domain
CLJU_RS20200	SM01382	CLJU_RS20200
CLJU_RS20200	SM01383	CLJU_RS20200
CLJU_RS20220	SM01403	CLJU_RS20220
CLJU_RS20230	SM00838	Elongation factor G C-terminus
CLJU_RS20230	SM00889	Elongation factor G, domain IV
CLJU_RS20250	SM00663	RNA polymerase I subunit A N-terminus
CLJU_RS20275	SM00649	Ribosomal protein L11/L12
CLJU_RS20280	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CLJU_RS20280	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CLJU_RS20320	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CLJU_RS20325	SM00535	Ribonuclease III family
CLJU_RS20330	SM00840	CLJU_RS20330
CLJU_RS20340	SM00670	Large family of predicted nucleotide-binding domains
CLJU_RS20355	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20360	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20360	SM01086	C-terminal, D2-small domain, of ClpB protein
CLJU_RS20385	SM00838	Elongation factor G C-terminus
CLJU_RS20385	SM00889	Elongation factor G, domain IV
CLJU_RS20460	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20470	SM00977	TilS substrate C-terminal domain
CLJU_RS20475	SM00331	Sigma factor PP2C-like phosphatases
CLJU_RS20505	SM00316	Ribosomal protein S1-like RNA-binding domain
CLJU_RS20525	SM00363	S4 RNA-binding domain
CLJU_RS20530	SM00411	bacterial (prokaryotic) histone like domain
CLJU_RS20545	SM00966	SpoVT / AbrB like domain 
CLJU_RS20555	SM00487	DEAD-like helicases superfamily
CLJU_RS20555	SM00490	helicase superfamily c-terminal domain
CLJU_RS20555	SM00982	CLJU_RS20555
CLJU_RS20555	SM01058	CarD-like/TRCF domain
CLJU_RS20565	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLJU_RS20570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS20570	SM00387	Histidine kinase-like ATPases
CLJU_RS20570	SM00388	His Kinase A (phosphoacceptor) domain
CLJU_RS20575	SM00448	cheY-homologous receiver domain
CLJU_RS20575	SM00862	Transcriptional regulatory protein, C terminal
CLJU_RS20580	SM01400	CLJU_RS20580
CLJU_RS20620	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS20640	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLJU_RS20660	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS20670	SM01230	CLJU_RS20670
CLJU_RS20685	SM00849	Metallo-beta-lactamase superfamily
CLJU_RS20745	SM00878	Biotin carboxylase C-terminal domain
CLJU_RS20760	SM00825	Beta-ketoacyl synthase
CLJU_RS20765	SM00822	CLJU_RS20765
CLJU_RS20770	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CLJU_RS20785	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLJU_RS20845	SM00881	CoA binding domain
CLJU_RS20860	SM00788	Adenylosuccinate synthetase
CLJU_RS20930	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS20945	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20950	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS20985	SM01007	Class II Aldolase and Adducin N-terminal domain
CLJU_RS21000	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLJU_RS21000	SM01134	CLJU_RS21000
CLJU_RS21010	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS21015	SM00938	Nitrogen regulatory protein P-II
CLJU_RS21040	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS21045	SM00382	ATPases associated with a variety of cellular activities
CLJU_RS21120	SM00470	ParB-like nuclease domain
CLJU_RS21130	SM00470	ParB-like nuclease domain
CLJU_RS21140	SM01228	CLJU_RS21140
CLJU_RS21150	SM00393	Putative single-stranded nucleic acids-binding domain
CLJU_RS21150	SM01245	CLJU_RS21150
CLJU_RS21160	SM01234	CLJU_RS21160
CLJU_RS21180	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS21215	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS21215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLJU_RS21220	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS21275	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
CLJU_RS21305	SM00635	Bacterial Ig-like domain 2
CLJU_RS21310	SM00635	Bacterial Ig-like domain 2
CLJU_RS21320	SM00635	Bacterial Ig-like domain 2
CLJU_RS21325	SM00635	Bacterial Ig-like domain 2
CLJU_RS21330	SM00635	Bacterial Ig-like domain 2
CLJU_RS21335	SM00635	Bacterial Ig-like domain 2
CLJU_RS21370	SM00060	Fibronectin type 3 domain
CLJU_RS21370	SM00635	Bacterial Ig-like domain 2
CLJU_RS21385	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLJU_RS21400	SM00342	helix_turn_helix, arabinose operon control protein
CLJU_RS21435	SM00507	HNH nucleases
CLJU_RS21460	SM00422	helix_turn_helix, mercury resistance
CLJU_RS21475	SM00052	Putative diguanylate phosphodiesterase
CLJU_RS21485	SM00267	diguanylate cyclase
CLJU_RS21495	SM00479	CLJU_RS21495
CLJU_RS21500	SM00530	Helix-turn-helix XRE-family like proteins 
CLJU_RS21505	SM00267	diguanylate cyclase
