CLOBY_RS00005	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CLOBY_RS00010	SM00480	DNA polymerase III beta subunit
CLOBY_RS00015	SM00363	S4 RNA-binding domain
CLOBY_RS00030	SM00387	Histidine kinase-like ATPases
CLOBY_RS00030	SM00433	TopoisomeraseII
CLOBY_RS00035	SM00434	DNA Topoisomerase IV
CLOBY_RS00135	SM00387	Histidine kinase-like ATPases
CLOBY_RS00135	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS00200	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS00225	SM00902	Iron hydrogenase small subunit
CLOBY_RS00230	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS00260	SM00851	MGS-like domain
CLOBY_RS00270	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CLOBY_RS00275	SM00851	MGS-like domain
CLOBY_RS00275	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CLOBY_RS00285	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS00305	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS00325	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS00340	SM00448	cheY-homologous receiver domain
CLOBY_RS00340	SM00850	LytTr DNA-binding domain
CLOBY_RS00355	SM00448	cheY-homologous receiver domain
CLOBY_RS00355	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS00360	SM00387	Histidine kinase-like ATPases
CLOBY_RS00360	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS00380	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS00385	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS00410	SM01011	Aminopeptidase P, N-terminal domain
CLOBY_RS00440	SM01208	CLOBY_RS00440
CLOBY_RS00445	SM00493	CLOBY_RS00445
CLOBY_RS00450	SM00650	Ribosomal RNA adenine dimethylases
CLOBY_RS00610	SM01400	CLOBY_RS00610
CLOBY_RS00615	SM00448	cheY-homologous receiver domain
CLOBY_RS00615	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS00620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS00620	SM00387	Histidine kinase-like ATPases
CLOBY_RS00620	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS00630	SM00487	DEAD-like helicases superfamily
CLOBY_RS00630	SM00490	helicase superfamily c-terminal domain
CLOBY_RS00630	SM00982	CLOBY_RS00630
CLOBY_RS00630	SM01058	CarD-like/TRCF domain
CLOBY_RS00645	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS00655	SM00966	SpoVT / AbrB like domain 
CLOBY_RS00670	SM00411	bacterial (prokaryotic) histone like domain
CLOBY_RS00675	SM00363	S4 RNA-binding domain
CLOBY_RS00695	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS00750	SM00331	Sigma factor PP2C-like phosphatases
CLOBY_RS00755	SM00977	TilS substrate C-terminal domain
CLOBY_RS00765	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS00930	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS00930	SM01086	C-terminal, D2-small domain, of ClpB protein
CLOBY_RS00945	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS00960	SM00670	Large family of predicted nucleotide-binding domains
CLOBY_RS00975	SM00840	CLOBY_RS00975
CLOBY_RS00985	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CLOBY_RS01020	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CLOBY_RS01025	SM00649	Ribosomal protein L11/L12
CLOBY_RS01050	SM00663	RNA polymerase I subunit A N-terminus
CLOBY_RS01065	SM00838	Elongation factor G C-terminus
CLOBY_RS01065	SM00889	Elongation factor G, domain IV
CLOBY_RS01075	SM01403	CLOBY_RS01075
CLOBY_RS01095	SM01382	CLOBY_RS01095
CLOBY_RS01095	SM01383	CLOBY_RS01095
CLOBY_RS01110	SM00322	K homology RNA-binding domain
CLOBY_RS01130	SM01374	CLOBY_RS01130
CLOBY_RS01135	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CLOBY_RS01200	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS01220	SM00363	S4 RNA-binding domain
CLOBY_RS01220	SM01390	CLOBY_RS01220
CLOBY_RS01225	SM00662	RNA polymerases D
CLOBY_RS01235	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS01240	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS01265	SM00646	CLOBY_RS01265
CLOBY_RS01290	SM00028	Tetratricopeptide repeats
CLOBY_RS01295	SM00448	cheY-homologous receiver domain
CLOBY_RS01295	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS01300	SM00387	Histidine kinase-like ATPases
CLOBY_RS01300	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS01320	SM00028	Tetratricopeptide repeats
CLOBY_RS01370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS01380	SM00905	Dihydroneopterin aldolase
CLOBY_RS01420	SM00917	LeuA allosteric (dimerisation) domain
CLOBY_RS01435	SM01329	CLOBY_RS01435
CLOBY_RS01460	SM00854	Bacterial capsule synthesis protein PGA_cap
CLOBY_RS01475	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS01485	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS01515	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS01575	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS01590	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS01620	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS01625	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS01625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS01630	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS01630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS01665	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CLOBY_RS01710	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS01710	SM00876	Biotin and Thiamin Synthesis associated domain
CLOBY_RS01740	SM00831	Cation transporter/ATPase, N-terminus
CLOBY_RS01750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS01750	SM00895	CLOBY_RS01750
CLOBY_RS01755	SM00893	Electron transfer flavoprotein domain
CLOBY_RS01760	SM00893	Electron transfer flavoprotein domain
CLOBY_RS01790	SM00881	CoA binding domain
CLOBY_RS01805	SM00893	Electron transfer flavoprotein domain
CLOBY_RS01810	SM00893	Electron transfer flavoprotein domain
CLOBY_RS01825	SM00478	endonuclease III
CLOBY_RS01840	SM00883	Chaperonin 10 Kd subunit
CLOBY_RS01855	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS01855	SM01240	CLOBY_RS01855
CLOBY_RS01885	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS01935	SM00448	cheY-homologous receiver domain
CLOBY_RS01935	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS01940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS01940	SM00387	Histidine kinase-like ATPases
CLOBY_RS01940	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS01970	SM00363	S4 RNA-binding domain
CLOBY_RS01980	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CLOBY_RS01980	SM00292	breast cancer carboxy-terminal domain
CLOBY_RS01980	SM00532	Ligase N family
CLOBY_RS02000	SM00845	GatB domain
CLOBY_RS02135	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS02140	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS02155	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS02160	SM00966	SpoVT / AbrB like domain 
CLOBY_RS02260	SM00646	CLOBY_RS02260
CLOBY_RS02285	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS02450	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLOBY_RS02500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS02500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS02510	SM00257	Lysin motif
CLOBY_RS02555	SM00357	Cold shock protein domain
CLOBY_RS02555	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS02555	SM00959	Rho termination factor, N-terminal domain
CLOBY_RS02580	SM00937	CLOBY_RS02580
CLOBY_RS02655	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS02745	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CLOBY_RS02745	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS02765	SM00957	SecA DEAD-like domain
CLOBY_RS02765	SM00958	SecA preprotein cross-linking domain
CLOBY_RS02770	SM00937	CLOBY_RS02770
CLOBY_RS02785	SM00448	cheY-homologous receiver domain
CLOBY_RS02785	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS02790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS02790	SM00387	Histidine kinase-like ATPases
CLOBY_RS02790	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS02800	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS02800	SM00732	Likely ribonuclease with RNase H fold.
CLOBY_RS02870	SM00900	CLOBY_RS02870
CLOBY_RS02965	SM00448	cheY-homologous receiver domain
CLOBY_RS02965	SM00850	LytTr DNA-binding domain
CLOBY_RS02970	SM00387	Histidine kinase-like ATPases
CLOBY_RS02975	SM00793	Accessory gene regulator B
CLOBY_RS02985	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS03025	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS03070	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLOBY_RS03075	SM00479	CLOBY_RS03075
CLOBY_RS03080	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS03090	SM00448	cheY-homologous receiver domain
CLOBY_RS03090	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS03095	SM00387	Histidine kinase-like ATPases
CLOBY_RS03095	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS03100	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS03110	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLOBY_RS03235	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS03245	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS03270	SM01103	CLOBY_RS03270
CLOBY_RS03280	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS03295	SM00936	Penicillin-binding protein 5, C-terminal domain 
CLOBY_RS03300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CLOBY_RS03400	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS03410	SM00458	Ricin-type beta-trefoil
CLOBY_RS03410	SM00633	Glycosyl hydrolase family 10
CLOBY_RS03430	SM00155	Phospholipase D. Active site motifs.
CLOBY_RS03465	SM00830	Chorismate mutase type II
CLOBY_RS03490	SM00606	Cellulose Binding Domain Type IV
CLOBY_RS03500	SM00448	cheY-homologous receiver domain
CLOBY_RS03500	SM00850	LytTr DNA-binding domain
CLOBY_RS03520	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLOBY_RS03520	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLOBY_RS03565	SM01118	CLOBY_RS03565
CLOBY_RS03585	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS03615	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CLOBY_RS03645	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS03660	SM00448	cheY-homologous receiver domain
CLOBY_RS03660	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS03665	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS03665	SM00387	Histidine kinase-like ATPases
CLOBY_RS03665	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS03675	SM00900	CLOBY_RS03675
CLOBY_RS03720	SM00267	diguanylate cyclase
CLOBY_RS03720	SM01049	CLOBY_RS03720
CLOBY_RS03725	SM00341	Helicase and RNase D C-terminal
CLOBY_RS03725	SM00487	DEAD-like helicases superfamily
CLOBY_RS03725	SM00490	helicase superfamily c-terminal domain
CLOBY_RS03725	SM00956	CLOBY_RS03725
CLOBY_RS03735	SM00481	DNA polymerase alpha chain like domain
CLOBY_RS03740	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS03750	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS03750	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CLOBY_RS03760	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS03760	SM00448	cheY-homologous receiver domain
CLOBY_RS03775	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS03790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS03810	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS03815	SM01007	Class II Aldolase and Adducin N-terminal domain
CLOBY_RS03825	SM00861	Transketolase, pyrimidine binding domain
CLOBY_RS03845	SM00876	Biotin and Thiamin Synthesis associated domain
CLOBY_RS03855	SM00947	Carbonic anhydrase
CLOBY_RS03865	SM00897	FIST N domain
CLOBY_RS03865	SM01204	CLOBY_RS03865
CLOBY_RS03870	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS03995	SM00271	DnaJ molecular chaperone homology domain
CLOBY_RS04010	SM00331	Sigma factor PP2C-like phosphatases
CLOBY_RS04010	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CLOBY_RS04015	SM00331	Sigma factor PP2C-like phosphatases
CLOBY_RS04290	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS04335	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS04340	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS04370	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS04380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS04385	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS04430	SM00793	Accessory gene regulator B
CLOBY_RS04435	SM00387	Histidine kinase-like ATPases
CLOBY_RS04535	SM00900	CLOBY_RS04535
CLOBY_RS04590	SM00487	DEAD-like helicases superfamily
CLOBY_RS04645	SM01040	BRO family, N-terminal domain
CLOBY_RS04675	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS04690	SM00857	Resolvase, N terminal domain
CLOBY_RS04720	SM00220	Serine/Threonine protein kinases, catalytic domain
CLOBY_RS04730	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS04735	SM00448	cheY-homologous receiver domain
CLOBY_RS04735	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS04750	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS04755	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS04760	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLOBY_RS04795	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS04795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS04840	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS04850	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS04865	SM00448	cheY-homologous receiver domain
CLOBY_RS04865	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS04870	SM00387	Histidine kinase-like ATPases
CLOBY_RS04890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS04890	SM00866	CLOBY_RS04890
CLOBY_RS04955	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS05005	SM00148	Phospholipase C, catalytic domain (part); domain X
CLOBY_RS05015	SM00637	CLOBY_RS05015
CLOBY_RS05045	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS05070	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS05070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS05100	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS05100	SM00871	Bacterial transcription activator, effector binding domain
CLOBY_RS05120	SM01061	CAT RNA binding domain
CLOBY_RS05125	SM00850	LytTr DNA-binding domain
CLOBY_RS05130	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS05165	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS05180	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS05180	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS05185	SM00878	Biotin carboxylase C-terminal domain
CLOBY_RS05210	SM01134	CLOBY_RS05210
CLOBY_RS05260	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS05270	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS05275	SM00100	Cyclic nucleotide-monophosphate binding domain
CLOBY_RS05275	SM00419	helix_turn_helix, cAMP Regulatory protein
CLOBY_RS05280	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS05280	SM01134	CLOBY_RS05280
CLOBY_RS05285	SM01133	CLOBY_RS05285
CLOBY_RS05295	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS05295	SM01091	Transporter associated domain
CLOBY_RS05310	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS05315	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS05320	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS05340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS05340	SM00387	Histidine kinase-like ATPases
CLOBY_RS05340	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS05345	SM00448	cheY-homologous receiver domain
CLOBY_RS05345	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS05360	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS05380	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS05380	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS05405	SM00387	Histidine kinase-like ATPases
CLOBY_RS05465	SM00838	Elongation factor G C-terminus
CLOBY_RS05470	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS05490	SM00271	DnaJ molecular chaperone homology domain
CLOBY_RS05515	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS05545	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS05555	SM00014	Acid phosphatase homologues
CLOBY_RS05575	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS05590	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS05595	SM00400	zinc finger
CLOBY_RS05595	SM00493	CLOBY_RS05595
CLOBY_RS05655	SM00387	Histidine kinase-like ATPases
CLOBY_RS05660	SM00448	cheY-homologous receiver domain
CLOBY_RS05660	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS05690	SM00460	Transglutaminase/protease-like homologues
CLOBY_RS05715	SM00481	DNA polymerase alpha chain like domain
CLOBY_RS05740	SM00562	CLOBY_RS05740
CLOBY_RS05785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS05800	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS05810	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS05855	SM00327	von Willebrand factor (vWF) type A domain
CLOBY_RS05860	SM00267	diguanylate cyclase
CLOBY_RS05875	SM01230	CLOBY_RS05875
CLOBY_RS05880	SM01012	CLOBY_RS05880
CLOBY_RS05900	SM01329	CLOBY_RS05900
CLOBY_RS05940	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CLOBY_RS05940	SM00475	5'-3' exonuclease
CLOBY_RS05940	SM00482	DNA polymerase A domain
CLOBY_RS05960	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06010	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CLOBY_RS06025	SM00387	Histidine kinase-like ATPases
CLOBY_RS06025	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS06030	SM00387	Histidine kinase-like ATPases
CLOBY_RS06030	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS06040	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CLOBY_RS06040	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CLOBY_RS06040	SM00493	CLOBY_RS06040
CLOBY_RS06050	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS06050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS06065	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06090	SM00903	Flavin reductase like domain
CLOBY_RS06105	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS06105	SM01134	CLOBY_RS06105
CLOBY_RS06170	SM00463	Small MutS-related domain
CLOBY_RS06170	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLOBY_RS06170	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLOBY_RS06210	SM00028	Tetratricopeptide repeats
CLOBY_RS06255	SM00028	Tetratricopeptide repeats
CLOBY_RS06295	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CLOBY_RS06340	SM00479	CLOBY_RS06340
CLOBY_RS06370	SM00836	DALR anticodon binding domain
CLOBY_RS06370	SM01016	Arginyl tRNA synthetase N terminal dom
CLOBY_RS06405	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS06425	SM00344	helix_turn_helix ASNC type
CLOBY_RS06435	SM00481	DNA polymerase alpha chain like domain
CLOBY_RS06445	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS06470	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06505	SM00244	prohibitin homologues
CLOBY_RS06515	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS06525	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06535	SM01211	CLOBY_RS06535
CLOBY_RS06540	SM01001	AIR carboxylase
CLOBY_RS06565	SM00798	AICARFT/IMPCHase bienzyme
CLOBY_RS06565	SM00851	MGS-like domain
CLOBY_RS06570	SM01209	CLOBY_RS06570
CLOBY_RS06570	SM01210	CLOBY_RS06570
CLOBY_RS06575	SM00028	Tetratricopeptide repeats
CLOBY_RS06590	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS06610	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CLOBY_RS06615	SM00822	CLOBY_RS06615
CLOBY_RS06620	SM00825	Beta-ketoacyl synthase
CLOBY_RS06635	SM00878	Biotin carboxylase C-terminal domain
CLOBY_RS06655	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06690	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CLOBY_RS06700	SM00732	Likely ribonuclease with RNase H fold.
CLOBY_RS06715	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS06720	SM00838	Elongation factor G C-terminus
CLOBY_RS06755	SM00864	Tubulin/FtsZ family, GTPase domain
CLOBY_RS06755	SM00865	Tubulin/FtsZ family, C-terminal domain
CLOBY_RS06790	SM00448	cheY-homologous receiver domain
CLOBY_RS06790	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS06795	SM00091	PAS domain
CLOBY_RS06795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS06795	SM00387	Histidine kinase-like ATPases
CLOBY_RS06795	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS06815	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06830	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS06865	SM00072	Guanylate kinase homologues.
CLOBY_RS06870	SM01409	CLOBY_RS06870
CLOBY_RS06880	SM00487	DEAD-like helicases superfamily
CLOBY_RS06880	SM00490	helicase superfamily c-terminal domain
CLOBY_RS06910	SM00331	Sigma factor PP2C-like phosphatases
CLOBY_RS06910	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CLOBY_RS06915	SM00220	Serine/Threonine protein kinases, catalytic domain
CLOBY_RS06915	SM00740	CLOBY_RS06915
CLOBY_RS06930	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CLOBY_RS06945	SM01120	CLOBY_RS06945
CLOBY_RS06945	SM01121	CLOBY_RS06945
CLOBY_RS06950	SM00487	DEAD-like helicases superfamily
CLOBY_RS06950	SM00490	helicase superfamily c-terminal domain
CLOBY_RS07010	SM00358	Double-stranded RNA binding motif
CLOBY_RS07010	SM00535	Ribonuclease III family
CLOBY_RS07015	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS07020	SM00968	SMC proteins Flexible Hinge Domain
CLOBY_RS07025	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07025	SM00962	SRP54-type protein, GTPase domain
CLOBY_RS07025	SM00963	SRP54-type protein, helical bundle domain
CLOBY_RS07035	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07035	SM00962	SRP54-type protein, GTPase domain
CLOBY_RS07035	SM00963	SRP54-type protein, helical bundle domain
CLOBY_RS07085	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07095	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CLOBY_RS07095	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CLOBY_RS07095	SM00493	CLOBY_RS07095
CLOBY_RS07225	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS07225	SM00322	K homology RNA-binding domain
CLOBY_RS07265	SM01387	CLOBY_RS07265
CLOBY_RS07270	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS07270	SM00322	K homology RNA-binding domain
CLOBY_RS07295	SM00843	CLOBY_RS07295
CLOBY_RS07300	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS07310	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07315	SM00322	K homology RNA-binding domain
CLOBY_RS07315	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS07335	SM00998	Adenylosuccinate lyase C-terminus
CLOBY_RS07375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS07380	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS07380	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07410	SM00460	Transglutaminase/protease-like homologues
CLOBY_RS07420	SM00671	Sel1-like repeats.
CLOBY_RS07460	SM00479	CLOBY_RS07460
CLOBY_RS07480	SM00518	AP endonuclease family 2
CLOBY_RS07495	SM00260	Two component signalling adaptor domain
CLOBY_RS07495	SM00448	cheY-homologous receiver domain
CLOBY_RS07500	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS07525	SM00450	Rhodanese Homology Domain
CLOBY_RS07575	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS07580	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS07605	SM00287	Bacterial SH3 domain homologues
CLOBY_RS07645	SM00014	Acid phosphatase homologues
CLOBY_RS07665	SM00344	helix_turn_helix ASNC type
CLOBY_RS07715	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS07725	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07770	SM00838	Elongation factor G C-terminus
CLOBY_RS07770	SM00889	Elongation factor G, domain IV
CLOBY_RS07790	SM01120	CLOBY_RS07790
CLOBY_RS07935	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS07940	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS07955	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS07970	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS08010	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS08065	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS08160	SM00014	Acid phosphatase homologues
CLOBY_RS08165	SM00448	cheY-homologous receiver domain
CLOBY_RS08165	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS08170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS08170	SM00387	Histidine kinase-like ATPases
CLOBY_RS08170	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS08180	SM00387	Histidine kinase-like ATPases
CLOBY_RS08180	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS08230	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS08250	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS08260	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS08270	SM00871	Bacterial transcription activator, effector binding domain
CLOBY_RS08310	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS08345	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLOBY_RS08355	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS08360	SM00226	Low molecular weight phosphatase family
CLOBY_RS08380	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS08410	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS08420	SM00363	S4 RNA-binding domain
CLOBY_RS08420	SM01390	CLOBY_RS08420
CLOBY_RS08425	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS08475	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS08490	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS08495	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS08500	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS08510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS08520	SM00529	Helix-turn-helix diphteria tox regulatory element
CLOBY_RS08545	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS08550	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS08640	SM00507	HNH nucleases
CLOBY_RS08645	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS08675	SM00487	DEAD-like helicases superfamily
CLOBY_RS08695	SM01040	BRO family, N-terminal domain
CLOBY_RS08700	SM00465	GIY-YIG type nucleases (URI domain)
CLOBY_RS08725	SM00507	HNH nucleases
CLOBY_RS08850	SM00635	Bacterial Ig-like domain 2
CLOBY_RS08865	SM00644	CLOBY_RS08865
CLOBY_RS08905	SM01058	CarD-like/TRCF domain
CLOBY_RS08930	SM00917	LeuA allosteric (dimerisation) domain
CLOBY_RS08935	SM00387	Histidine kinase-like ATPases
CLOBY_RS08935	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS08955	SM00857	Resolvase, N terminal domain
CLOBY_RS08990	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS09035	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09050	SM01001	AIR carboxylase
CLOBY_RS09055	SM00487	DEAD-like helicases superfamily
CLOBY_RS09055	SM00490	helicase superfamily c-terminal domain
CLOBY_RS09060	SM00487	DEAD-like helicases superfamily
CLOBY_RS09060	SM00490	helicase superfamily c-terminal domain
CLOBY_RS09070	SM00341	Helicase and RNase D C-terminal
CLOBY_RS09070	SM00487	DEAD-like helicases superfamily
CLOBY_RS09070	SM00490	helicase superfamily c-terminal domain
CLOBY_RS09070	SM00956	CLOBY_RS09070
CLOBY_RS09075	SM00271	DnaJ molecular chaperone homology domain
CLOBY_RS09080	SM00487	DEAD-like helicases superfamily
CLOBY_RS09080	SM00490	helicase superfamily c-terminal domain
CLOBY_RS09115	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CLOBY_RS09165	SM01061	CAT RNA binding domain
CLOBY_RS09180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS09180	SM00895	CLOBY_RS09180
CLOBY_RS09195	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS09215	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS09220	SM00861	Transketolase, pyrimidine binding domain
CLOBY_RS09255	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09300	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS09320	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09330	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09330	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS09340	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS09355	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09360	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09420	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CLOBY_RS09475	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS09480	SM00458	Ricin-type beta-trefoil
CLOBY_RS09490	SM00387	Histidine kinase-like ATPases
CLOBY_RS09490	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS09500	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS09610	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09615	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS09620	SM01217	CLOBY_RS09620
CLOBY_RS09630	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS09650	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09650	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS09690	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS09700	SM00060	Fibronectin type 3 domain
CLOBY_RS09720	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS09725	SM00893	Electron transfer flavoprotein domain
CLOBY_RS09730	SM00893	Electron transfer flavoprotein domain
CLOBY_RS09780	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09810	SM00487	DEAD-like helicases superfamily
CLOBY_RS09815	SM00490	helicase superfamily c-terminal domain
CLOBY_RS09850	SM00487	DEAD-like helicases superfamily
CLOBY_RS09915	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS09930	SM00646	CLOBY_RS09930
CLOBY_RS09940	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS09945	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09950	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS09965	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS10000	SM00858	CLOBY_RS10000
CLOBY_RS10025	SM00421	helix_turn_helix, Lux Regulon
CLOBY_RS10065	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS10070	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS10080	SM00448	cheY-homologous receiver domain
CLOBY_RS10080	SM00850	LytTr DNA-binding domain
CLOBY_RS10090	SM00387	Histidine kinase-like ATPases
CLOBY_RS10090	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS10095	SM00448	cheY-homologous receiver domain
CLOBY_RS10095	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS10115	SM00710	Parallel beta-helix repeats
CLOBY_RS10120	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS10200	SM00490	helicase superfamily c-terminal domain
CLOBY_RS10205	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS10205	SM00871	Bacterial transcription activator, effector binding domain
CLOBY_RS10230	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS10240	SM00138	Methyltransferase, chemotaxis proteins 
CLOBY_RS10245	SM00073	Histidine Phosphotransfer domain
CLOBY_RS10245	SM00260	Two component signalling adaptor domain
CLOBY_RS10245	SM00387	Histidine kinase-like ATPases
CLOBY_RS10245	SM01231	CLOBY_RS10245
CLOBY_RS10250	SM00448	cheY-homologous receiver domain
CLOBY_RS10255	SM00260	Two component signalling adaptor domain
CLOBY_RS10260	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS10290	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS10300	SM00448	cheY-homologous receiver domain
CLOBY_RS10300	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS10305	SM00387	Histidine kinase-like ATPases
CLOBY_RS10305	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS10345	SM00448	cheY-homologous receiver domain
CLOBY_RS10345	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS10350	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS10365	SM00387	Histidine kinase-like ATPases
CLOBY_RS10365	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS10380	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS10395	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS10400	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS10410	SM00267	diguanylate cyclase
CLOBY_RS10415	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS10420	SM00260	Two component signalling adaptor domain
CLOBY_RS10425	SM00448	cheY-homologous receiver domain
CLOBY_RS10435	SM00138	Methyltransferase, chemotaxis proteins 
CLOBY_RS10440	SM00448	cheY-homologous receiver domain
CLOBY_RS10445	SM00073	Histidine Phosphotransfer domain
CLOBY_RS10445	SM00260	Two component signalling adaptor domain
CLOBY_RS10445	SM00387	Histidine kinase-like ATPases
CLOBY_RS10445	SM01231	CLOBY_RS10445
CLOBY_RS10450	SM00448	cheY-homologous receiver domain
CLOBY_RS10475	SM00387	Histidine kinase-like ATPases
CLOBY_RS10480	SM00331	Sigma factor PP2C-like phosphatases
CLOBY_RS10485	SM00387	Histidine kinase-like ATPases
CLOBY_RS10490	SM00073	Histidine Phosphotransfer domain
CLOBY_RS10495	SM00448	cheY-homologous receiver domain
CLOBY_RS10510	SM00260	Two component signalling adaptor domain
CLOBY_RS10515	SM00448	cheY-homologous receiver domain
CLOBY_RS10535	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS10555	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS10555	SM01134	CLOBY_RS10555
CLOBY_RS10580	SM00890	Domain of unknown function
CLOBY_RS10605	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS10640	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS10660	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS10725	SM00853	MutL C terminal dimerisation domain
CLOBY_RS10725	SM01340	CLOBY_RS10725
CLOBY_RS10755	SM00893	Electron transfer flavoprotein domain
CLOBY_RS10760	SM00893	Electron transfer flavoprotein domain
CLOBY_RS10795	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CLOBY_RS10795	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLOBY_RS10850	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS10865	SM00450	Rhodanese Homology Domain
CLOBY_RS10875	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS10880	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS10925	SM00635	Bacterial Ig-like domain 2
CLOBY_RS11050	SM00450	Rhodanese Homology Domain
CLOBY_RS11065	SM00448	cheY-homologous receiver domain
CLOBY_RS11075	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CLOBY_RS11075	SM00091	PAS domain
CLOBY_RS11075	SM00387	Histidine kinase-like ATPases
CLOBY_RS11075	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS11075	SM00448	cheY-homologous receiver domain
CLOBY_RS11085	SM00448	cheY-homologous receiver domain
CLOBY_RS11090	SM00138	Methyltransferase, chemotaxis proteins 
CLOBY_RS11095	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS11100	SM00073	Histidine Phosphotransfer domain
CLOBY_RS11100	SM00260	Two component signalling adaptor domain
CLOBY_RS11100	SM00387	Histidine kinase-like ATPases
CLOBY_RS11100	SM01231	CLOBY_RS11100
CLOBY_RS11105	SM00260	Two component signalling adaptor domain
CLOBY_RS11110	SM00448	cheY-homologous receiver domain
CLOBY_RS11115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS11115	SM00387	Histidine kinase-like ATPases
CLOBY_RS11115	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS11120	SM00448	cheY-homologous receiver domain
CLOBY_RS11120	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS11160	SM00387	Histidine kinase-like ATPases
CLOBY_RS11160	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS11165	SM00448	cheY-homologous receiver domain
CLOBY_RS11165	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS11190	SM00487	DEAD-like helicases superfamily
CLOBY_RS11190	SM00490	helicase superfamily c-terminal domain
CLOBY_RS11200	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS11205	SM00028	Tetratricopeptide repeats
CLOBY_RS11280	SM00487	DEAD-like helicases superfamily
CLOBY_RS11280	SM00490	helicase superfamily c-terminal domain
CLOBY_RS11290	SM00855	Phosphoglycerate mutase family
CLOBY_RS11330	SM00902	Iron hydrogenase small subunit
CLOBY_RS11425	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS11450	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS11450	SM01134	CLOBY_RS11450
CLOBY_RS11460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS11460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS11470	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS11485	SM00903	Flavin reductase like domain
CLOBY_RS11515	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS11530	SM00641	Glycosyl hydrolases family 25
CLOBY_RS11535	SM00448	cheY-homologous receiver domain
CLOBY_RS11540	SM00138	Methyltransferase, chemotaxis proteins 
CLOBY_RS11545	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS11545	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS11550	SM00260	Two component signalling adaptor domain
CLOBY_RS11555	SM00073	Histidine Phosphotransfer domain
CLOBY_RS11555	SM00260	Two component signalling adaptor domain
CLOBY_RS11555	SM00387	Histidine kinase-like ATPases
CLOBY_RS11555	SM01231	CLOBY_RS11555
CLOBY_RS11560	SM00448	cheY-homologous receiver domain
CLOBY_RS11565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS11565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS11575	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS11585	SM00770	Zinc dependent phospholipase C (alpha toxin)
CLOBY_RS11625	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS11665	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS11685	SM00387	Histidine kinase-like ATPases
CLOBY_RS11685	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS11690	SM00448	cheY-homologous receiver domain
CLOBY_RS11690	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS11705	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS11720	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS11735	SM00487	DEAD-like helicases superfamily
CLOBY_RS11735	SM00490	helicase superfamily c-terminal domain
CLOBY_RS11740	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS11770	SM00387	Histidine kinase-like ATPases
CLOBY_RS11770	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS11775	SM00448	cheY-homologous receiver domain
CLOBY_RS11775	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS11795	SM00091	PAS domain
CLOBY_RS11795	SM00267	diguanylate cyclase
CLOBY_RS11795	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS11810	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS11835	SM00850	LytTr DNA-binding domain
CLOBY_RS11840	SM01007	Class II Aldolase and Adducin N-terminal domain
CLOBY_RS11845	SM00882	Coenzyme A transferase
CLOBY_RS11895	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS11895	SM00387	Histidine kinase-like ATPases
CLOBY_RS11895	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS11905	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS11950	SM00487	DEAD-like helicases superfamily
CLOBY_RS12020	SM01144	CLOBY_RS12020
CLOBY_RS12040	SM00876	Biotin and Thiamin Synthesis associated domain
CLOBY_RS12115	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS12115	SM00876	Biotin and Thiamin Synthesis associated domain
CLOBY_RS12125	SM00855	Phosphoglycerate mutase family
CLOBY_RS12145	SM01130	CLOBY_RS12145
CLOBY_RS12150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS12165	SM00421	helix_turn_helix, Lux Regulon
CLOBY_RS12180	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS12190	SM00220	Serine/Threonine protein kinases, catalytic domain
CLOBY_RS12190	SM00740	CLOBY_RS12190
CLOBY_RS12255	SM01266	CLOBY_RS12255
CLOBY_RS12275	SM00825	Beta-ketoacyl synthase
CLOBY_RS12280	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS12280	SM00871	Bacterial transcription activator, effector binding domain
CLOBY_RS12295	SM01230	CLOBY_RS12295
CLOBY_RS12320	SM01117	CLOBY_RS12320
CLOBY_RS12330	SM00387	Histidine kinase-like ATPases
CLOBY_RS12330	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS12335	SM00641	Glycosyl hydrolases family 25
CLOBY_RS12355	SM01400	CLOBY_RS12355
CLOBY_RS12360	SM00490	helicase superfamily c-terminal domain
CLOBY_RS12380	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS12400	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS12425	SM00479	CLOBY_RS12425
CLOBY_RS12425	SM00487	DEAD-like helicases superfamily
CLOBY_RS12425	SM00491	CLOBY_RS12425
CLOBY_RS12445	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CLOBY_RS12445	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CLOBY_RS12445	SM00493	CLOBY_RS12445
CLOBY_RS12465	SM00899	CLOBY_RS12465
CLOBY_RS12475	SM00421	helix_turn_helix, Lux Regulon
CLOBY_RS12510	SM00357	Cold shock protein domain
CLOBY_RS12560	SM00363	S4 RNA-binding domain
CLOBY_RS12570	SM00563	Phosphate acyltransferases
CLOBY_RS12635	SM00936	Penicillin-binding protein 5, C-terminal domain 
CLOBY_RS12655	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS12665	SM00852	Probable molybdopterin binding domain
CLOBY_RS12675	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS12690	SM00852	Probable molybdopterin binding domain
CLOBY_RS12695	SM00852	Probable molybdopterin binding domain
CLOBY_RS12720	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CLOBY_RS12740	SM00100	Cyclic nucleotide-monophosphate binding domain
CLOBY_RS12740	SM00419	helix_turn_helix, cAMP Regulatory protein
CLOBY_RS12805	SM00448	cheY-homologous receiver domain
CLOBY_RS12810	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLOBY_RS12830	SM00363	S4 RNA-binding domain
CLOBY_RS12835	SM00861	Transketolase, pyrimidine binding domain
CLOBY_RS12905	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS12915	SM00841	Elongation factor P, C-terminal
CLOBY_RS12915	SM01185	CLOBY_RS12915
CLOBY_RS13015	SM00477	DNA/RNA non-specific endonuclease
CLOBY_RS13015	SM00892	DNA/RNA non-specific endonuclease
CLOBY_RS13020	SM00641	Glycosyl hydrolases family 25
CLOBY_RS13075	SM00257	Lysin motif
CLOBY_RS13150	SM00857	Resolvase, N terminal domain
CLOBY_RS13240	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS13275	SM00966	SpoVT / AbrB like domain 
CLOBY_RS13285	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS13290	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS13315	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS13350	SM00981	CLOBY_RS13350
CLOBY_RS13360	SM00363	S4 RNA-binding domain
CLOBY_RS13370	SM00363	S4 RNA-binding domain
CLOBY_RS13430	SM00740	CLOBY_RS13430
CLOBY_RS13455	SM00873	B3/4 domain
CLOBY_RS13455	SM00874	tRNA synthetase B5 domain
CLOBY_RS13455	SM00896	Ferredoxin-fold anticodon binding domain
CLOBY_RS13465	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CLOBY_RS13520	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CLOBY_RS13525	SM01130	CLOBY_RS13525
CLOBY_RS13580	SM00910	CLOBY_RS13580
CLOBY_RS13620	SM01007	Class II Aldolase and Adducin N-terminal domain
CLOBY_RS13625	SM00882	Coenzyme A transferase
CLOBY_RS13685	SM00028	Tetratricopeptide repeats
CLOBY_RS13690	SM00460	Transglutaminase/protease-like homologues
CLOBY_RS13705	SM00448	cheY-homologous receiver domain
CLOBY_RS13705	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS13710	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS13710	SM00387	Histidine kinase-like ATPases
CLOBY_RS13710	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS13715	SM00870	CLOBY_RS13715
CLOBY_RS13805	SM00363	S4 RNA-binding domain
CLOBY_RS13810	SM00642	Alpha-amylase domain
CLOBY_RS13840	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS13860	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS13880	SM01058	CarD-like/TRCF domain
CLOBY_RS13920	SM00387	Histidine kinase-like ATPases
CLOBY_RS13920	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS13925	SM00897	FIST N domain
CLOBY_RS13925	SM01204	CLOBY_RS13925
CLOBY_RS13935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS13945	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS14070	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS14075	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS14085	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS14085	SM00954	Region found in RelA / SpoT proteins
CLOBY_RS14115	SM01323	CLOBY_RS14115
CLOBY_RS14130	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS14155	SM00919	Malic enzyme, NAD binding domain
CLOBY_RS14155	SM01274	CLOBY_RS14155
CLOBY_RS14185	SM00014	Acid phosphatase homologues
CLOBY_RS14190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS14190	SM00387	Histidine kinase-like ATPases
CLOBY_RS14190	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS14195	SM00448	cheY-homologous receiver domain
CLOBY_RS14195	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS14270	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS14280	SM01091	Transporter associated domain
CLOBY_RS14325	SM00506	Appr-1"-p processing enzyme
CLOBY_RS14340	SM00271	DnaJ molecular chaperone homology domain
CLOBY_RS14365	SM00481	DNA polymerase alpha chain like domain
CLOBY_RS14425	SM01018	B12 binding domain
CLOBY_RS14490	SM00878	Biotin carboxylase C-terminal domain
CLOBY_RS14500	SM00797	Allophanate hydrolase subunit 2
CLOBY_RS14505	SM00796	Allophanate hydrolase subunit 1
CLOBY_RS14510	SM01005	Alanine racemase, C-terminal domain
CLOBY_RS14535	SM00344	helix_turn_helix ASNC type
CLOBY_RS14545	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS14580	SM00363	S4 RNA-binding domain
CLOBY_RS14590	SM00842	Cell division protein FtsA
CLOBY_RS14650	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS14650	SM00464	Found in ATP-dependent protease La (LON)
CLOBY_RS14655	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS14660	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS14660	SM00994	ClpX C4-type zinc finger
CLOBY_RS14660	SM01086	C-terminal, D2-small domain, of ClpB protein
CLOBY_RS14740	SM00981	CLOBY_RS14740
CLOBY_RS14750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS14760	SM00954	Region found in RelA / SpoT proteins
CLOBY_RS14785	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS14840	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS14840	SM00387	Histidine kinase-like ATPases
CLOBY_RS14840	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS14845	SM00448	cheY-homologous receiver domain
CLOBY_RS14845	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS14875	SM01004	Delta-aminolevulinic acid dehydratase
CLOBY_RS14980	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS15030	SM00855	Phosphoglycerate mutase family
CLOBY_RS15070	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15095	SM00047	Lysozyme subfamily 2
CLOBY_RS15115	SM00448	cheY-homologous receiver domain
CLOBY_RS15120	SM00387	Histidine kinase-like ATPases
CLOBY_RS15135	SM00919	Malic enzyme, NAD binding domain
CLOBY_RS15135	SM01274	CLOBY_RS15135
CLOBY_RS15170	SM01038	Beta galactosidase small chain
CLOBY_RS15180	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS15190	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS15205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS15205	SM00387	Histidine kinase-like ATPases
CLOBY_RS15205	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS15210	SM00448	cheY-homologous receiver domain
CLOBY_RS15210	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS15215	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS15285	SM00267	diguanylate cyclase
CLOBY_RS15300	SM00813	Alpha-L-arabinofuranosidase C-terminus
CLOBY_RS15340	SM00387	Histidine kinase-like ATPases
CLOBY_RS15340	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS15345	SM00091	PAS domain
CLOBY_RS15345	SM00387	Histidine kinase-like ATPases
CLOBY_RS15345	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS15370	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15400	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15450	SM00448	cheY-homologous receiver domain
CLOBY_RS15450	SM00850	LytTr DNA-binding domain
CLOBY_RS15470	SM00387	Histidine kinase-like ATPases
CLOBY_RS15485	SM00635	Bacterial Ig-like domain 2
CLOBY_RS15500	SM00861	Transketolase, pyrimidine binding domain
CLOBY_RS15590	SM00014	Acid phosphatase homologues
CLOBY_RS15595	SM00529	Helix-turn-helix diphteria tox regulatory element
CLOBY_RS15615	SM00938	Nitrogen regulatory protein P-II
CLOBY_RS15625	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15630	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15650	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15655	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15745	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS15760	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15840	SM00882	Coenzyme A transferase
CLOBY_RS15845	SM00882	Coenzyme A transferase
CLOBY_RS15865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS15865	SM00387	Histidine kinase-like ATPases
CLOBY_RS15865	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS15870	SM00448	cheY-homologous receiver domain
CLOBY_RS15870	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS15895	SM01078	CLOBY_RS15895
CLOBY_RS15920	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CLOBY_RS15920	SM00091	PAS domain
CLOBY_RS15920	SM00267	diguanylate cyclase
CLOBY_RS15920	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS15925	SM00100	Cyclic nucleotide-monophosphate binding domain
CLOBY_RS15925	SM00419	helix_turn_helix, cAMP Regulatory protein
CLOBY_RS15940	SM01059	Chloramphenicol acetyltransferase
CLOBY_RS15955	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS15960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS15980	SM00831	Cation transporter/ATPase, N-terminus
CLOBY_RS16045	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS16155	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS16170	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS16180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS16240	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS16250	SM00855	Phosphoglycerate mutase family
CLOBY_RS16255	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS16320	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS16385	SM00460	Transglutaminase/protease-like homologues
CLOBY_RS16395	SM00460	Transglutaminase/protease-like homologues
CLOBY_RS16415	SM00919	Malic enzyme, NAD binding domain
CLOBY_RS16415	SM01274	CLOBY_RS16415
CLOBY_RS16465	SM00764	Citrate lyase ligase C-terminal domain
CLOBY_RS16470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS16470	SM00895	CLOBY_RS16470
CLOBY_RS16515	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16560	SM00460	Transglutaminase/protease-like homologues
CLOBY_RS16565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS16650	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16650	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS16660	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16720	SM00287	Bacterial SH3 domain homologues
CLOBY_RS16790	SM00465	GIY-YIG type nucleases (URI domain)
CLOBY_RS16850	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS16855	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS16870	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS16880	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS16895	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS16895	SM00871	Bacterial transcription activator, effector binding domain
CLOBY_RS16905	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS16915	SM00422	helix_turn_helix, mercury resistance
CLOBY_RS16925	SM00645	Papain family cysteine protease
CLOBY_RS16930	SM00656	CLOBY_RS16930
CLOBY_RS16940	SM00344	helix_turn_helix ASNC type
CLOBY_RS16955	SM00798	AICARFT/IMPCHase bienzyme
CLOBY_RS16995	SM00448	cheY-homologous receiver domain
CLOBY_RS16995	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS17000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS17000	SM00387	Histidine kinase-like ATPases
CLOBY_RS17000	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS17005	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS17015	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS17030	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS17040	SM00903	Flavin reductase like domain
CLOBY_RS17115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS17115	SM00387	Histidine kinase-like ATPases
CLOBY_RS17115	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS17120	SM00448	cheY-homologous receiver domain
CLOBY_RS17120	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS17140	SM00534	ATPase domain of DNA mismatch repair MUTS family
CLOBY_RS17155	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS17155	SM00448	cheY-homologous receiver domain
CLOBY_RS17160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS17160	SM00387	Histidine kinase-like ATPases
CLOBY_RS17180	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS17190	SM00365	Leucine-rich repeat, SDS22-like subfamily
CLOBY_RS17190	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CLOBY_RS17200	SM00860	SMI1 / KNR4 family
CLOBY_RS17275	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS17285	SM01217	CLOBY_RS17285
CLOBY_RS17290	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS17295	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS17295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS17300	SM00342	helix_turn_helix, arabinose operon control protein
CLOBY_RS17300	SM00448	cheY-homologous receiver domain
CLOBY_RS17305	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CLOBY_RS17305	SM00091	PAS domain
CLOBY_RS17305	SM00387	Histidine kinase-like ATPases
CLOBY_RS17305	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS17315	SM00387	Histidine kinase-like ATPases
CLOBY_RS17315	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS17350	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS17355	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS17370	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS17415	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS17430	SM00052	Putative diguanylate phosphodiesterase
CLOBY_RS17430	SM00267	diguanylate cyclase
CLOBY_RS17450	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS17530	SM00287	Bacterial SH3 domain homologues
CLOBY_RS17560	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS17570	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS17570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS17630	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS17640	SM00028	Tetratricopeptide repeats
CLOBY_RS17640	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CLOBY_RS17640	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CLOBY_RS17640	SM00091	PAS domain
CLOBY_RS17640	SM00387	Histidine kinase-like ATPases
CLOBY_RS17640	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS17645	SM00636	CLOBY_RS17645
CLOBY_RS17675	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS17685	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS17710	SM00448	cheY-homologous receiver domain
CLOBY_RS17710	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS17715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS17715	SM00387	Histidine kinase-like ATPases
CLOBY_RS17715	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS17720	SM01301	CLOBY_RS17720
CLOBY_RS17745	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS17755	SM00823	Phosphopantetheine attachment site
CLOBY_RS17760	SM00479	CLOBY_RS17760
CLOBY_RS17760	SM00481	DNA polymerase alpha chain like domain
CLOBY_RS17765	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS17845	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS17855	SM00100	Cyclic nucleotide-monophosphate binding domain
CLOBY_RS17855	SM00419	helix_turn_helix, cAMP Regulatory protein
CLOBY_RS17870	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS17910	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS17915	SM00100	Cyclic nucleotide-monophosphate binding domain
CLOBY_RS17915	SM00419	helix_turn_helix, cAMP Regulatory protein
CLOBY_RS17940	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS17985	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS18015	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS18015	SM00387	Histidine kinase-like ATPases
CLOBY_RS18015	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS18070	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS18090	SM00656	CLOBY_RS18090
CLOBY_RS18095	SM00155	Phospholipase D. Active site motifs.
CLOBY_RS18100	SM00529	Helix-turn-helix diphteria tox regulatory element
CLOBY_RS18110	SM00861	Transketolase, pyrimidine binding domain
CLOBY_RS18125	SM01007	Class II Aldolase and Adducin N-terminal domain
CLOBY_RS18155	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS18155	SM01134	CLOBY_RS18155
CLOBY_RS18160	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS18175	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CLOBY_RS18180	SM01005	Alanine racemase, C-terminal domain
CLOBY_RS18200	SM00642	Alpha-amylase domain
CLOBY_RS18205	SM00642	Alpha-amylase domain
CLOBY_RS18235	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS18265	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18275	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS18285	SM00344	helix_turn_helix ASNC type
CLOBY_RS18295	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18295	SM01086	C-terminal, D2-small domain, of ClpB protein
CLOBY_RS18330	SM00421	helix_turn_helix, Lux Regulon
CLOBY_RS18340	SM00091	PAS domain
CLOBY_RS18340	SM00267	diguanylate cyclase
CLOBY_RS18340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CLOBY_RS18350	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18355	SM00387	Histidine kinase-like ATPases
CLOBY_RS18360	SM00448	cheY-homologous receiver domain
CLOBY_RS18360	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS18395	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18425	SM00899	CLOBY_RS18425
CLOBY_RS18430	SM00899	CLOBY_RS18430
CLOBY_RS18470	SM00831	Cation transporter/ATPase, N-terminus
CLOBY_RS18475	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS18475	SM01131	CLOBY_RS18475
CLOBY_RS18515	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18515	SM00962	SRP54-type protein, GTPase domain
CLOBY_RS18580	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18655	SM00028	Tetratricopeptide repeats
CLOBY_RS18660	SM00858	CLOBY_RS18660
CLOBY_RS18790	SM00260	Two component signalling adaptor domain
CLOBY_RS18795	SM00448	cheY-homologous receiver domain
CLOBY_RS18805	SM00073	Histidine Phosphotransfer domain
CLOBY_RS18805	SM00260	Two component signalling adaptor domain
CLOBY_RS18805	SM00387	Histidine kinase-like ATPases
CLOBY_RS18805	SM01231	CLOBY_RS18805
CLOBY_RS18810	SM00138	Methyltransferase, chemotaxis proteins 
CLOBY_RS18815	SM00448	cheY-homologous receiver domain
CLOBY_RS18825	SM00260	Two component signalling adaptor domain
CLOBY_RS18830	SM01245	CLOBY_RS18830
CLOBY_RS18855	SM00890	Domain of unknown function
CLOBY_RS18880	SM00434	DNA Topoisomerase IV
CLOBY_RS18885	SM00387	Histidine kinase-like ATPases
CLOBY_RS18885	SM00433	TopoisomeraseII
CLOBY_RS18920	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18960	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS18985	SM00052	Putative diguanylate phosphodiesterase
CLOBY_RS18985	SM00267	diguanylate cyclase
CLOBY_RS19015	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19015	SM01086	C-terminal, D2-small domain, of ClpB protein
CLOBY_RS19020	SM00028	Tetratricopeptide repeats
CLOBY_RS19025	SM00028	Tetratricopeptide repeats
CLOBY_RS19025	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS19060	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19060	SM00930	CLOBY_RS19060
CLOBY_RS19070	SM00316	Ribosomal protein S1-like RNA-binding domain
CLOBY_RS19070	SM00357	Cold shock protein domain
CLOBY_RS19070	SM00955	CLOBY_RS19070
CLOBY_RS19080	SM01192	CLOBY_RS19080
CLOBY_RS19080	SM01193	CLOBY_RS19080
CLOBY_RS19110	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CLOBY_RS19135	SM01208	CLOBY_RS19135
CLOBY_RS19150	SM00478	endonuclease III
CLOBY_RS19155	SM00563	Phosphate acyltransferases
CLOBY_RS19170	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS19170	SM00924	MgtE intracellular N domain
CLOBY_RS19175	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS19190	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CLOBY_RS19225	SM00763	PrkA AAA domain
CLOBY_RS19240	SM00448	cheY-homologous receiver domain
CLOBY_RS19250	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19270	SM00829	Enoylreductase
CLOBY_RS19275	SM00091	PAS domain
CLOBY_RS19275	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19295	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19300	SM00387	Histidine kinase-like ATPases
CLOBY_RS19300	SM00388	His Kinase A (phosphoacceptor) domain
CLOBY_RS19305	SM00448	cheY-homologous receiver domain
CLOBY_RS19305	SM00862	Transcriptional regulatory protein, C terminal
CLOBY_RS19310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS19315	SM00052	Putative diguanylate phosphodiesterase
CLOBY_RS19330	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS19340	SM00882	Coenzyme A transferase
CLOBY_RS19360	SM00060	Fibronectin type 3 domain
CLOBY_RS19360	SM00409	Immunoglobulin
CLOBY_RS19360	SM00635	Bacterial Ig-like domain 2
CLOBY_RS19365	SM00448	cheY-homologous receiver domain
CLOBY_RS19365	SM01043	Bacterial transcriptional activator domain
CLOBY_RS19370	SM00387	Histidine kinase-like ATPases
CLOBY_RS19390	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19400	SM00954	Region found in RelA / SpoT proteins
CLOBY_RS19410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS19460	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS19460	SM01134	CLOBY_RS19460
CLOBY_RS19480	SM00363	S4 RNA-binding domain
CLOBY_RS19490	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CLOBY_RS19490	SM00267	diguanylate cyclase
CLOBY_RS19555	SM00646	CLOBY_RS19555
CLOBY_RS19560	SM01324	CLOBY_RS19560
CLOBY_RS19585	SM00679	Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.
CLOBY_RS19600	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CLOBY_RS19600	SM00267	diguanylate cyclase
CLOBY_RS19600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS19650	SM00646	CLOBY_RS19650
CLOBY_RS19655	SM00646	CLOBY_RS19655
CLOBY_RS19670	SM00632	CLOBY_RS19670
CLOBY_RS19670	SM00642	Alpha-amylase domain
CLOBY_RS19670	SM01066	Carbohydrate binding domain
CLOBY_RS19700	SM00028	Tetratricopeptide repeats
CLOBY_RS19705	SM00984	UDP binding domain
CLOBY_RS19805	SM00635	Bacterial Ig-like domain 2
CLOBY_RS19810	SM00635	Bacterial Ig-like domain 2
CLOBY_RS19885	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS19940	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20100	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS20110	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS20115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS20115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS20125	SM00420	helix_turn_helix, Deoxyribose operon repressor
CLOBY_RS20125	SM01134	CLOBY_RS20125
CLOBY_RS20130	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS20130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CLOBY_RS20135	SM01068	Putative carbohydrate binding domain
CLOBY_RS20150	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS20155	SM01043	Bacterial transcriptional activator domain
CLOBY_RS20160	SM01130	CLOBY_RS20160
CLOBY_RS20175	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20185	SM00062	Bacterial periplasmic substrate-binding proteins
CLOBY_RS20185	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CLOBY_RS20200	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20235	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CLOBY_RS20240	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS20240	SM01049	CLOBY_RS20240
CLOBY_RS20310	SM00481	DNA polymerase alpha chain like domain
CLOBY_RS20315	SM00886	Stress responsive A/B Barrel Domain
CLOBY_RS20340	SM00465	GIY-YIG type nucleases (URI domain)
CLOBY_RS20355	SM00240	Forkhead associated domain
CLOBY_RS20360	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20365	SM00487	DEAD-like helicases superfamily
CLOBY_RS20365	SM00490	helicase superfamily c-terminal domain
CLOBY_RS20380	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CLOBY_RS20380	SM00245	tail specific protease
CLOBY_RS20390	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20400	SM00861	Transketolase, pyrimidine binding domain
CLOBY_RS20470	SM00984	UDP binding domain
CLOBY_RS20485	SM00488	CLOBY_RS20485
CLOBY_RS20485	SM00491	CLOBY_RS20485
CLOBY_RS20495	SM00966	SpoVT / AbrB like domain 
CLOBY_RS20535	SM00986	Uracil DNA glycosylase superfamily
CLOBY_RS20535	SM00987	UreE urease accessory protein, C-terminal domain 
CLOBY_RS20565	SM00852	Probable molybdopterin binding domain
CLOBY_RS20590	SM00838	Elongation factor G C-terminus
CLOBY_RS20590	SM00889	Elongation factor G, domain IV
CLOBY_RS20720	SM00642	Alpha-amylase domain
CLOBY_RS20735	SM00642	Alpha-amylase domain
CLOBY_RS20785	SM01061	CAT RNA binding domain
CLOBY_RS20800	SM00729	Elongator protein 3, MiaB family, Radical SAM
CLOBY_RS20800	SM00876	Biotin and Thiamin Synthesis associated domain
CLOBY_RS20835	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20840	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20860	SM00287	Bacterial SH3 domain homologues
CLOBY_RS20875	SM00493	CLOBY_RS20875
CLOBY_RS20885	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20925	SM00116	Domain in cystathionine beta-synthase and other proteins.
CLOBY_RS20925	SM00924	MgtE intracellular N domain
CLOBY_RS20955	SM01091	Transporter associated domain
CLOBY_RS20965	SM00640	Glycosyl hydrolases family 32
CLOBY_RS20970	SM00354	helix_turn _helix lactose operon repressor
CLOBY_RS20980	SM00530	Helix-turn-helix XRE-family like proteins 
CLOBY_RS20985	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20990	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS20995	SM00347	helix_turn_helix multiple antibiotic resistance protein
CLOBY_RS21040	SM00448	cheY-homologous receiver domain
CLOBY_RS21040	SM00850	LytTr DNA-binding domain
CLOBY_RS21050	SM00793	Accessory gene regulator B
CLOBY_RS21055	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS21070	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS21080	SM01260	CLOBY_RS21080
CLOBY_RS21145	SM00563	Phosphate acyltransferases
CLOBY_RS21150	SM00487	DEAD-like helicases superfamily
CLOBY_RS21150	SM00490	helicase superfamily c-terminal domain
CLOBY_RS21160	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS21180	SM00938	Nitrogen regulatory protein P-II
CLOBY_RS21205	SM01130	CLOBY_RS21205
CLOBY_RS21300	SM00646	CLOBY_RS21300
CLOBY_RS21340	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CLOBY_RS21350	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS21375	SM00849	Metallo-beta-lactamase superfamily
CLOBY_RS21430	SM00788	Adenylosuccinate synthetase
CLOBY_RS21445	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS21450	SM00382	ATPases associated with a variety of cellular activities
CLOBY_RS21530	SM00470	ParB-like nuclease domain
CLOBY_RS21540	SM01228	CLOBY_RS21540
CLOBY_RS21550	SM00393	Putative single-stranded nucleic acids-binding domain
CLOBY_RS21550	SM01245	CLOBY_RS21550
CLOBY_RS21560	SM01234	CLOBY_RS21560
