CPHO_RS00005	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CPHO_RS00010	SM00480	DNA polymerase III beta subunit
CPHO_RS00025	SM00387	Histidine kinase-like ATPases
CPHO_RS00025	SM00433	TopoisomeraseII
CPHO_RS00050	SM00434	DNA Topoisomerase IV
CPHO_RS00080	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPHO_RS00135	SM00220	Serine/Threonine protein kinases, catalytic domain
CPHO_RS00135	SM00740	CPHO_RS00135
CPHO_RS00140	SM00220	Serine/Threonine protein kinases, catalytic domain
CPHO_RS00155	SM00331	Sigma factor PP2C-like phosphatases
CPHO_RS00155	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CPHO_RS00160	SM00240	Forkhead associated domain
CPHO_RS00165	SM00240	Forkhead associated domain
CPHO_RS00285	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPHO_RS00285	SM00876	Biotin and Thiamin Synthesis associated domain
CPHO_RS00380	SM00487	DEAD-like helicases superfamily
CPHO_RS00380	SM00490	helicase superfamily c-terminal domain
CPHO_RS00395	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS00475	SM00060	Fibronectin type 3 domain
CPHO_RS00505	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS00535	SM00487	DEAD-like helicases superfamily
CPHO_RS00565	SM00487	DEAD-like helicases superfamily
CPHO_RS00565	SM00490	helicase superfamily c-terminal domain
CPHO_RS00670	SM00507	HNH nucleases
CPHO_RS00705	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS00725	SM00829	Enoylreductase
CPHO_RS00765	SM00450	Rhodanese Homology Domain
CPHO_RS00775	SM00852	Probable molybdopterin binding domain
CPHO_RS00780	SM00852	Probable molybdopterin binding domain
CPHO_RS00860	SM00365	Leucine-rich repeat, SDS22-like subfamily
CPHO_RS00980	SM00507	HNH nucleases
CPHO_RS01005	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01015	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPHO_RS01015	SM00493	CPHO_RS01015
CPHO_RS01020	SM00507	HNH nucleases
CPHO_RS01045	SM00917	LeuA allosteric (dimerisation) domain
CPHO_RS01060	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CPHO_RS01080	SM01060	CPHO_RS01080
CPHO_RS01130	SM00849	Metallo-beta-lactamase superfamily
CPHO_RS01135	SM00100	Cyclic nucleotide-monophosphate binding domain
CPHO_RS01135	SM00419	helix_turn_helix, cAMP Regulatory protein
CPHO_RS01140	SM00478	endonuclease III
CPHO_RS01165	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01235	SM00487	DEAD-like helicases superfamily
CPHO_RS01235	SM00490	helicase superfamily c-terminal domain
CPHO_RS01240	SM00357	Cold shock protein domain
CPHO_RS01250	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CPHO_RS01250	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CPHO_RS01250	SM00493	CPHO_RS01250
CPHO_RS01275	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CPHO_RS01275	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPHO_RS01280	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01475	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01480	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01500	SM01260	CPHO_RS01500
CPHO_RS01610	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CPHO_RS01620	SM00507	HNH nucleases
CPHO_RS01655	SM00855	Phosphoglycerate mutase family
CPHO_RS01660	SM00387	Histidine kinase-like ATPases
CPHO_RS01660	SM00388	His Kinase A (phosphoacceptor) domain
CPHO_RS01665	SM00448	cheY-homologous receiver domain
CPHO_RS01665	SM00862	Transcriptional regulatory protein, C terminal
CPHO_RS01695	SM01155	CPHO_RS01695
CPHO_RS01725	SM01004	Delta-aminolevulinic acid dehydratase
CPHO_RS01770	SM00855	Phosphoglycerate mutase family
CPHO_RS01795	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS01825	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01840	SM00529	Helix-turn-helix diphteria tox regulatory element
CPHO_RS01840	SM00899	CPHO_RS01840
CPHO_RS01855	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CPHO_RS01955	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS01965	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02060	SM01133	CPHO_RS02060
CPHO_RS02095	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CPHO_RS02095	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CPHO_RS02100	SM00649	Ribosomal protein L11/L12
CPHO_RS02175	SM00507	HNH nucleases
CPHO_RS02180	SM00198	SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
CPHO_RS02190	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02190	SM01086	C-terminal, D2-small domain, of ClpB protein
CPHO_RS02200	SM01110	CPHO_RS02200
CPHO_RS02215	SM00478	endonuclease III
CPHO_RS02215	SM00525	CPHO_RS02215
CPHO_RS02220	SM00947	Carbonic anhydrase
CPHO_RS02230	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02250	SM01058	CarD-like/TRCF domain
CPHO_RS02285	SM00840	CPHO_RS02285
CPHO_RS02290	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CPHO_RS02305	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02315	SM00354	helix_turn _helix lactose operon repressor
CPHO_RS02320	SM00507	HNH nucleases
CPHO_RS02380	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02420	SM00448	cheY-homologous receiver domain
CPHO_RS02420	SM00862	Transcriptional regulatory protein, C terminal
CPHO_RS02425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPHO_RS02425	SM00387	Histidine kinase-like ATPases
CPHO_RS02425	SM00388	His Kinase A (phosphoacceptor) domain
CPHO_RS02435	SM01209	CPHO_RS02435
CPHO_RS02435	SM01210	CPHO_RS02435
CPHO_RS02445	SM00998	Adenylosuccinate lyase C-terminus
CPHO_RS02470	SM00479	CPHO_RS02470
CPHO_RS02480	SM00020	Trypsin-like serine protease
CPHO_RS02525	SM01211	CPHO_RS02525
CPHO_RS02585	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CPHO_RS02615	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02655	SM00988	UreE urease accessory protein, N-terminal domain
CPHO_RS02675	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPHO_RS02685	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02730	SM00421	helix_turn_helix, Lux Regulon
CPHO_RS02750	SM01007	Class II Aldolase and Adducin N-terminal domain
CPHO_RS02760	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CPHO_RS02790	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS02880	SM00487	DEAD-like helicases superfamily
CPHO_RS02880	SM00491	CPHO_RS02880
CPHO_RS02985	SM00244	prohibitin homologues
CPHO_RS03025	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03045	SM00825	Beta-ketoacyl synthase
CPHO_RS03045	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CPHO_RS03060	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03145	SM00479	CPHO_RS03145
CPHO_RS03165	SM01110	CPHO_RS03165
CPHO_RS03185	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03205	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CPHO_RS03205	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CPHO_RS03210	SM00507	HNH nucleases
CPHO_RS03230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS03230	SM00866	CPHO_RS03230
CPHO_RS03285	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03285	SM00994	ClpX C4-type zinc finger
CPHO_RS03285	SM01086	C-terminal, D2-small domain, of ClpB protein
CPHO_RS03320	SM00562	CPHO_RS03320
CPHO_RS03325	SM00316	Ribosomal protein S1-like RNA-binding domain
CPHO_RS03375	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CPHO_RS03410	SM01110	CPHO_RS03410
CPHO_RS03415	SM01110	CPHO_RS03415
CPHO_RS03430	SM00855	Phosphoglycerate mutase family
CPHO_RS03440	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPHO_RS03455	SM00248	ankyrin repeats
CPHO_RS03485	SM00838	Elongation factor G C-terminus
CPHO_RS03500	SM00507	HNH nucleases
CPHO_RS03505	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS03525	SM00866	CPHO_RS03525
CPHO_RS03540	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03580	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPHO_RS03580	SM01091	Transporter associated domain
CPHO_RS03585	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPHO_RS03595	SM00271	DnaJ molecular chaperone homology domain
CPHO_RS03605	SM00322	K homology RNA-binding domain
CPHO_RS03640	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPHO_RS03670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPHO_RS03675	SM00400	zinc finger
CPHO_RS03675	SM00493	CPHO_RS03675
CPHO_RS03675	SM00766	DNA primase DnaG DnaB-binding
CPHO_RS03685	SM00014	Acid phosphatase homologues
CPHO_RS03720	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS03790	SM00984	UDP binding domain
CPHO_RS03885	SM00226	Low molecular weight phosphatase family
CPHO_RS03900	SM00855	Phosphoglycerate mutase family
CPHO_RS03910	SM00955	CPHO_RS03910
CPHO_RS03925	SM00880	CPHO_RS03925
CPHO_RS03925	SM01118	CPHO_RS03925
CPHO_RS03940	SM01230	CPHO_RS03940
CPHO_RS03985	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS04005	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CPHO_RS04065	SM00020	Trypsin-like serine protease
CPHO_RS04085	SM01230	CPHO_RS04085
CPHO_RS04115	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPHO_RS04240	SM00563	Phosphate acyltransferases
CPHO_RS04265	SM00220	Serine/Threonine protein kinases, catalytic domain
CPHO_RS04365	SM00864	Tubulin/FtsZ family, GTPase domain
CPHO_RS04365	SM00865	Tubulin/FtsZ family, C-terminal domain
CPHO_RS04400	SM00507	HNH nucleases
CPHO_RS04425	SM01130	CPHO_RS04425
CPHO_RS04440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS04440	SM00895	CPHO_RS04440
CPHO_RS04455	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS04460	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS04465	SM00870	CPHO_RS04465
CPHO_RS04505	SM00481	DNA polymerase alpha chain like domain
CPHO_RS04530	SM00363	S4 RNA-binding domain
CPHO_RS04535	SM00954	Region found in RelA / SpoT proteins
CPHO_RS04545	SM00479	CPHO_RS04545
CPHO_RS04550	SM00642	Alpha-amylase domain
CPHO_RS04660	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CPHO_RS04680	SM00358	Double-stranded RNA binding motif
CPHO_RS04680	SM00535	Ribonuclease III family
CPHO_RS04685	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CPHO_RS04685	SM01232	CPHO_RS04685
CPHO_RS04705	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS04705	SM00962	SRP54-type protein, GTPase domain
CPHO_RS04705	SM00963	SRP54-type protein, helical bundle domain
CPHO_RS04710	SM00507	HNH nucleases
CPHO_RS04750	SM00938	Nitrogen regulatory protein P-II
CPHO_RS04755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPHO_RS04760	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS04760	SM00962	SRP54-type protein, GTPase domain
CPHO_RS04760	SM00963	SRP54-type protein, helical bundle domain
CPHO_RS04800	SM00316	Ribosomal protein S1-like RNA-binding domain
CPHO_RS04800	SM00732	Likely ribonuclease with RNase H fold.
CPHO_RS04860	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS04905	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPHO_RS04920	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPHO_RS05000	SM00316	Ribosomal protein S1-like RNA-binding domain
CPHO_RS05010	SM00173	Ras subfamily of RAS small GTPases
CPHO_RS05045	SM00904	Riboflavin kinase
CPHO_RS05050	SM01387	CPHO_RS05050
CPHO_RS05055	SM00316	Ribosomal protein S1-like RNA-binding domain
CPHO_RS05055	SM00322	K homology RNA-binding domain
CPHO_RS05075	SM01130	CPHO_RS05075
CPHO_RS05080	SM00849	Metallo-beta-lactamase superfamily
CPHO_RS05090	SM00843	CPHO_RS05090
CPHO_RS05115	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS05130	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05145	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05165	SM00062	Bacterial periplasmic substrate-binding proteins
CPHO_RS05170	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05175	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPHO_RS05250	SM00420	helix_turn_helix, Deoxyribose operon repressor
CPHO_RS05250	SM01134	CPHO_RS05250
CPHO_RS05270	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05270	SM00487	DEAD-like helicases superfamily
CPHO_RS05270	SM00490	helicase superfamily c-terminal domain
CPHO_RS05270	SM00847	Helicase associated domain (HA2)  Add an annotation
CPHO_RS05300	SM00487	DEAD-like helicases superfamily
CPHO_RS05300	SM00490	helicase superfamily c-terminal domain
CPHO_RS05320	SM00529	Helix-turn-helix diphteria tox regulatory element
CPHO_RS05320	SM00899	CPHO_RS05320
CPHO_RS05350	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05350	SM00487	DEAD-like helicases superfamily
CPHO_RS05405	SM00861	Transketolase, pyrimidine binding domain
CPHO_RS05410	SM00341	Helicase and RNase D C-terminal
CPHO_RS05410	SM00474	3'-5' exonuclease
CPHO_RS05490	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CPHO_RS05540	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPHO_RS05545	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05550	SM01323	CPHO_RS05550
CPHO_RS05575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPHO_RS05575	SM00954	Region found in RelA / SpoT proteins
CPHO_RS05610	SM00849	Metallo-beta-lactamase superfamily
CPHO_RS05675	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05680	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CPHO_RS05685	SM00732	Likely ribonuclease with RNase H fold.
CPHO_RS05730	SM00841	Elongation factor P, C-terminal
CPHO_RS05730	SM01185	CPHO_RS05730
CPHO_RS05755	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05800	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CPHO_RS05805	SM00851	MGS-like domain
CPHO_RS05805	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPHO_RS05810	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CPHO_RS05820	SM00072	Guanylate kinase homologues.
CPHO_RS05825	SM01409	CPHO_RS05825
CPHO_RS05895	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPHO_RS05895	SM00465	GIY-YIG type nucleases (URI domain)
CPHO_RS05915	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CPHO_RS05955	SM00861	Transketolase, pyrimidine binding domain
CPHO_RS05965	SM00829	Enoylreductase
CPHO_RS05980	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS05990	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPHO_RS06025	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS06185	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS06225	SM00487	DEAD-like helicases superfamily
CPHO_RS06225	SM00490	helicase superfamily c-terminal domain
CPHO_RS06225	SM01142	CPHO_RS06225
CPHO_RS06275	SM00867	YceI-like domain 
CPHO_RS06320	SM01350	CPHO_RS06320
CPHO_RS06325	SM00487	DEAD-like helicases superfamily
CPHO_RS06325	SM00490	helicase superfamily c-terminal domain
CPHO_RS06340	SM00422	helix_turn_helix, mercury resistance
CPHO_RS06350	SM00422	helix_turn_helix, mercury resistance
CPHO_RS06355	SM00240	Forkhead associated domain
CPHO_RS06360	SM00957	SecA DEAD-like domain
CPHO_RS06360	SM00958	SecA preprotein cross-linking domain
CPHO_RS06415	SM00363	S4 RNA-binding domain
CPHO_RS06470	SM00363	S4 RNA-binding domain
CPHO_RS06500	SM00363	S4 RNA-binding domain
CPHO_RS06545	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CPHO_RS06555	SM00873	B3/4 domain
CPHO_RS06555	SM00874	tRNA synthetase B5 domain
CPHO_RS06555	SM00896	Ferredoxin-fold anticodon binding domain
CPHO_RS06565	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CPHO_RS06595	SM00849	Metallo-beta-lactamase superfamily
CPHO_RS06620	SM00487	DEAD-like helicases superfamily
CPHO_RS06620	SM00490	helicase superfamily c-terminal domain
CPHO_RS06635	SM01061	CAT RNA binding domain
CPHO_RS06645	SM00316	Ribosomal protein S1-like RNA-binding domain
CPHO_RS06655	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CPHO_RS06655	SM00475	5'-3' exonuclease
CPHO_RS06655	SM00482	DNA polymerase A domain
CPHO_RS06680	SM00062	Bacterial periplasmic substrate-binding proteins
CPHO_RS06690	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS06720	SM00487	DEAD-like helicases superfamily
CPHO_RS06720	SM00490	helicase superfamily c-terminal domain
CPHO_RS06725	SM01120	CPHO_RS06725
CPHO_RS06725	SM01121	CPHO_RS06725
CPHO_RS06730	SM00986	Uracil DNA glycosylase superfamily
CPHO_RS06730	SM00987	UreE urease accessory protein, C-terminal domain 
CPHO_RS06755	SM00855	Phosphoglycerate mutase family
CPHO_RS06770	SM00346	helix_turn_helix isocitrate lyase regulation
CPHO_RS06775	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPHO_RS06795	SM00924	MgtE intracellular N domain
CPHO_RS06855	SM00487	DEAD-like helicases superfamily
CPHO_RS06855	SM00490	helicase superfamily c-terminal domain
CPHO_RS06890	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS06925	SM00822	CPHO_RS06925
CPHO_RS07040	SM00479	CPHO_RS07040
CPHO_RS07045	SM00100	Cyclic nucleotide-monophosphate binding domain
CPHO_RS07045	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPHO_RS07055	SM01329	CPHO_RS07055
CPHO_RS07250	SM00470	ParB-like nuclease domain
CPHO_RS07265	SM00507	HNH nucleases
CPHO_RS07420	SM00507	HNH nucleases
CPHO_RS07430	SM00845	GatB domain
CPHO_RS07480	SM00292	breast cancer carboxy-terminal domain
CPHO_RS07480	SM00532	Ligase N family
CPHO_RS07490	SM00479	CPHO_RS07490
CPHO_RS07520	SM00641	Glycosyl hydrolases family 25
CPHO_RS07530	SM00893	Electron transfer flavoprotein domain
CPHO_RS07535	SM00893	Electron transfer flavoprotein domain
CPHO_RS07550	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS07555	SM00642	Alpha-amylase domain
CPHO_RS07560	SM00642	Alpha-amylase domain
CPHO_RS07565	SM00226	Low molecular weight phosphatase family
CPHO_RS07600	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS07655	SM00937	CPHO_RS07655
CPHO_RS07660	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS07660	SM00959	Rho termination factor, N-terminal domain
CPHO_RS07670	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPHO_RS07675	SM00852	Probable molybdopterin binding domain
CPHO_RS07715	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS07750	SM00836	DALR anticodon binding domain
CPHO_RS07750	SM01016	Arginyl tRNA synthetase N terminal dom
CPHO_RS07785	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPHO_RS07805	SM00487	DEAD-like helicases superfamily
CPHO_RS07805	SM00490	helicase superfamily c-terminal domain
CPHO_RS07830	SM00487	DEAD-like helicases superfamily
CPHO_RS07830	SM00490	helicase superfamily c-terminal domain
CPHO_RS07860	SM00346	helix_turn_helix isocitrate lyase regulation
CPHO_RS07900	SM00861	Transketolase, pyrimidine binding domain
CPHO_RS07945	SM00640	Glycosyl hydrolases family 32
CPHO_RS08095	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CPHO_RS08285	SM01192	CPHO_RS08285
CPHO_RS08285	SM01193	CPHO_RS08285
CPHO_RS08315	SM00829	Enoylreductase
CPHO_RS08320	SM00487	DEAD-like helicases superfamily
CPHO_RS08320	SM00490	helicase superfamily c-terminal domain
CPHO_RS08320	SM00982	CPHO_RS08320
CPHO_RS08320	SM01058	CarD-like/TRCF domain
CPHO_RS08370	SM00644	CPHO_RS08370
CPHO_RS08515	SM01101	CPHO_RS08515
CPHO_RS08700	SM01400	CPHO_RS08700
CPHO_RS08725	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CPHO_RS08735	SM00822	CPHO_RS08735
CPHO_RS08785	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS08800	SM00650	Ribosomal RNA adenine dimethylases
CPHO_RS08805	SM01208	CPHO_RS08805
CPHO_RS08875	SM00852	Probable molybdopterin binding domain
CPHO_RS08890	SM00858	CPHO_RS08890
CPHO_RS08905	SM00852	Probable molybdopterin binding domain
CPHO_RS08910	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPHO_RS08915	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPHO_RS08915	SM00387	Histidine kinase-like ATPases
CPHO_RS08915	SM00388	His Kinase A (phosphoacceptor) domain
CPHO_RS08920	SM00448	cheY-homologous receiver domain
CPHO_RS08920	SM00862	Transcriptional regulatory protein, C terminal
CPHO_RS08970	SM00798	AICARFT/IMPCHase bienzyme
CPHO_RS08970	SM00851	MGS-like domain
CPHO_RS08995	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS09015	SM00830	Chorismate mutase type II
CPHO_RS09040	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CPHO_RS09040	SM01232	CPHO_RS09040
CPHO_RS09180	SM00479	CPHO_RS09180
CPHO_RS09195	SM00487	DEAD-like helicases superfamily
CPHO_RS09195	SM00490	helicase superfamily c-terminal domain
CPHO_RS09335	SM00357	Cold shock protein domain
CPHO_RS09355	SM00487	DEAD-like helicases superfamily
CPHO_RS09355	SM00490	helicase superfamily c-terminal domain
CPHO_RS09385	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS09420	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS09430	SM00937	CPHO_RS09430
CPHO_RS09520	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPHO_RS09540	SM00341	Helicase and RNase D C-terminal
CPHO_RS09545	SM00507	HNH nucleases
CPHO_RS09580	SM00487	DEAD-like helicases superfamily
CPHO_RS09580	SM00490	helicase superfamily c-terminal domain
CPHO_RS09655	SM00957	SecA DEAD-like domain
CPHO_RS09655	SM00958	SecA preprotein cross-linking domain
CPHO_RS09675	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPHO_RS09675	SM00387	Histidine kinase-like ATPases
CPHO_RS09675	SM00388	His Kinase A (phosphoacceptor) domain
CPHO_RS09680	SM00448	cheY-homologous receiver domain
CPHO_RS09680	SM00862	Transcriptional regulatory protein, C terminal
CPHO_RS09770	SM00507	HNH nucleases
CPHO_RS09840	SM01001	AIR carboxylase
CPHO_RS09875	SM00642	Alpha-amylase domain
CPHO_RS09910	SM00450	Rhodanese Homology Domain
CPHO_RS09915	SM00878	Biotin carboxylase C-terminal domain
CPHO_RS09920	SM00878	Biotin carboxylase C-terminal domain
CPHO_RS09940	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS09955	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS10040	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS10155	SM00481	DNA polymerase alpha chain like domain
CPHO_RS10165	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10165	SM00930	CPHO_RS10165
CPHO_RS10210	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10230	SM01240	CPHO_RS10230
CPHO_RS10235	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPHO_RS10235	SM01240	CPHO_RS10235
CPHO_RS10270	SM00883	Chaperonin 10 Kd subunit
CPHO_RS10305	SM01005	Alanine racemase, C-terminal domain
CPHO_RS10385	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10420	SM00662	RNA polymerases D
CPHO_RS10425	SM00363	S4 RNA-binding domain
CPHO_RS10425	SM01390	CPHO_RS10425
CPHO_RS10440	SM00316	Ribosomal protein S1-like RNA-binding domain
CPHO_RS10520	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CPHO_RS10525	SM01374	CPHO_RS10525
CPHO_RS10560	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10580	SM01101	CPHO_RS10580
CPHO_RS10625	SM00322	K homology RNA-binding domain
CPHO_RS10640	SM01382	CPHO_RS10640
CPHO_RS10640	SM01383	CPHO_RS10640
CPHO_RS10660	SM01403	CPHO_RS10660
CPHO_RS10705	SM00838	Elongation factor G C-terminus
CPHO_RS10705	SM00889	Elongation factor G, domain IV
CPHO_RS10740	SM00642	Alpha-amylase domain
CPHO_RS10745	SM00642	Alpha-amylase domain
CPHO_RS10755	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10770	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10790	SM00663	RNA polymerase I subunit A N-terminus
CPHO_RS10835	SM00905	Dihydroneopterin aldolase
CPHO_RS10850	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS10875	SM00450	Rhodanese Homology Domain
CPHO_RS10880	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPHO_RS10885	SM00823	Phosphopantetheine attachment site
CPHO_RS11000	SM00155	Phospholipase D. Active site motifs.
CPHO_RS11015	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS11030	SM00062	Bacterial periplasmic substrate-binding proteins
CPHO_RS11035	SM00220	Serine/Threonine protein kinases, catalytic domain
CPHO_RS11085	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS11105	SM00507	HNH nucleases
CPHO_RS11110	SM00788	Adenylosuccinate synthetase
CPHO_RS11150	SM00450	Rhodanese Homology Domain
CPHO_RS11155	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS11155	SM01086	C-terminal, D2-small domain, of ClpB protein
CPHO_RS11180	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS11220	SM00422	helix_turn_helix, mercury resistance
CPHO_RS11225	SM00271	DnaJ molecular chaperone homology domain
CPHO_RS11260	SM00823	Phosphopantetheine attachment site
CPHO_RS11325	SM00984	UDP binding domain
CPHO_RS11355	SM00487	DEAD-like helicases superfamily
CPHO_RS11355	SM00490	helicase superfamily c-terminal domain
CPHO_RS11370	SM00487	DEAD-like helicases superfamily
CPHO_RS11370	SM00490	helicase superfamily c-terminal domain
CPHO_RS11445	SM00530	Helix-turn-helix XRE-family like proteins 
CPHO_RS11555	SM00823	Phosphopantetheine attachment site
CPHO_RS11555	SM00824	Thioesterase
CPHO_RS11555	SM00825	Beta-ketoacyl synthase
CPHO_RS11555	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CPHO_RS11580	SM01110	CPHO_RS11580
CPHO_RS11600	SM00507	HNH nucleases
CPHO_RS11620	SM00014	Acid phosphatase homologues
CPHO_RS11645	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS11740	SM00644	CPHO_RS11740
CPHO_RS11740	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
CPHO_RS11760	SM00563	Phosphate acyltransferases
CPHO_RS11770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS11770	SM00866	CPHO_RS11770
CPHO_RS11785	SM00855	Phosphoglycerate mutase family
CPHO_RS11855	SM00421	helix_turn_helix, Lux Regulon
CPHO_RS11855	SM00448	cheY-homologous receiver domain
CPHO_RS11860	SM00387	Histidine kinase-like ATPases
CPHO_RS11930	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS11935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS11975	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS12015	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPHO_RS12045	SM00450	Rhodanese Homology Domain
CPHO_RS12070	SM00450	Rhodanese Homology Domain
CPHO_RS12080	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CPHO_RS12080	SM01232	CPHO_RS12080
CPHO_RS12095	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS12105	SM00387	Histidine kinase-like ATPases
CPHO_RS12110	SM00421	helix_turn_helix, Lux Regulon
CPHO_RS12110	SM00448	cheY-homologous receiver domain
CPHO_RS12170	SM00382	ATPases associated with a variety of cellular activities
CPHO_RS12285	SM00342	helix_turn_helix, arabinose operon control protein
CPHO_RS12315	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPHO_RS12315	SM00895	CPHO_RS12315
CPHO_RS12465	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPHO_RS12495	SM00867	YceI-like domain 
CPHO_RS12520	SM00646	CPHO_RS12520
CPHO_RS12530	SM00470	ParB-like nuclease domain
CPHO_RS12550	SM01234	CPHO_RS12550
