CpN1_RS00005	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CpN1_RS00010	SM00480	DNA polymerase III beta subunit
CpN1_RS00025	SM00387	Histidine kinase-like ATPases
CpN1_RS00025	SM00433	TopoisomeraseII
CpN1_RS00045	SM00434	DNA Topoisomerase IV
CpN1_RS00090	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00135	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00160	SM00220	Serine/Threonine protein kinases, catalytic domain
CpN1_RS00160	SM00740	CpN1_RS00160
CpN1_RS00165	SM00220	Serine/Threonine protein kinases, catalytic domain
CpN1_RS00180	SM00331	Sigma factor PP2C-like phosphatases
CpN1_RS00180	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CpN1_RS00185	SM00240	Forkhead associated domain
CpN1_RS00190	SM00240	Forkhead associated domain
CpN1_RS00220	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00230	SM00924	MgtE intracellular N domain
CpN1_RS00235	SM00642	Alpha-amylase domain
CpN1_RS00290	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00300	SM00729	Elongator protein 3, MiaB family, Radical SAM
CpN1_RS00300	SM00876	Biotin and Thiamin Synthesis associated domain
CpN1_RS00325	SM00641	Glycosyl hydrolases family 25
CpN1_RS00375	SM00347	helix_turn_helix multiple antibiotic resistance protein
CpN1_RS00415	SM00487	DEAD-like helicases superfamily
CpN1_RS00415	SM00490	helicase superfamily c-terminal domain
CpN1_RS00415	SM00847	Helicase associated domain (HA2)  Add an annotation
CpN1_RS00430	SM00822	CpN1_RS00430
CpN1_RS00460	SM00507	HNH nucleases
CpN1_RS00560	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00580	SM00014	Acid phosphatase homologues
CpN1_RS00585	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00600	SM00829	Enoylreductase
CpN1_RS00635	SM01061	CAT RNA binding domain
CpN1_RS00670	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CpN1_RS00730	SM00829	Enoylreductase
CpN1_RS00755	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00765	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CpN1_RS00765	SM00493	CpN1_RS00765
CpN1_RS00785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CpN1_RS00785	SM00895	CpN1_RS00785
CpN1_RS00815	SM00917	LeuA allosteric (dimerisation) domain
CpN1_RS00835	SM01133	CpN1_RS00835
CpN1_RS00880	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CpN1_RS00890	SM01060	CpN1_RS00890
CpN1_RS00920	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS00940	SM00448	cheY-homologous receiver domain
CpN1_RS00940	SM00862	Transcriptional regulatory protein, C terminal
CpN1_RS00945	SM00387	Histidine kinase-like ATPases
CpN1_RS00945	SM00388	His Kinase A (phosphoacceptor) domain
CpN1_RS00995	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS01045	SM00849	Metallo-beta-lactamase superfamily
CpN1_RS01050	SM00100	Cyclic nucleotide-monophosphate binding domain
CpN1_RS01050	SM00419	helix_turn_helix, cAMP Regulatory protein
CpN1_RS01060	SM00478	endonuclease III
CpN1_RS01060	SM00525	CpN1_RS01060
CpN1_RS01140	SM00487	DEAD-like helicases superfamily
CpN1_RS01140	SM00490	helicase superfamily c-terminal domain
CpN1_RS01145	SM00357	Cold shock protein domain
CpN1_RS01150	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CpN1_RS01150	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CpN1_RS01150	SM00493	CpN1_RS01150
CpN1_RS01160	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
CpN1_RS01160	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CpN1_RS01225	SM00530	Helix-turn-helix XRE-family like proteins 
CpN1_RS01310	SM00855	Phosphoglycerate mutase family
CpN1_RS01315	SM00387	Histidine kinase-like ATPases
CpN1_RS01315	SM00388	His Kinase A (phosphoacceptor) domain
CpN1_RS01320	SM00448	cheY-homologous receiver domain
CpN1_RS01320	SM00862	Transcriptional regulatory protein, C terminal
CpN1_RS01385	SM01004	Delta-aminolevulinic acid dehydratase
CpN1_RS01420	SM00855	Phosphoglycerate mutase family
CpN1_RS01445	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS01495	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CpN1_RS01560	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CpN1_RS01565	SM00649	Ribosomal protein L11/L12
CpN1_RS01615	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS01640	SM00663	RNA polymerase I subunit A N-terminus
CpN1_RS01650	SM00421	helix_turn_helix, Lux Regulon
CpN1_RS01650	SM00448	cheY-homologous receiver domain
CpN1_RS01660	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS01705	SM00838	Elongation factor G C-terminus
CpN1_RS01705	SM00889	Elongation factor G, domain IV
CpN1_RS01750	SM01403	CpN1_RS01750
CpN1_RS01770	SM01382	CpN1_RS01770
CpN1_RS01770	SM01383	CpN1_RS01770
CpN1_RS01785	SM00322	K homology RNA-binding domain
CpN1_RS01810	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS01825	SM01374	CpN1_RS01825
CpN1_RS01830	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CpN1_RS01850	SM00870	CpN1_RS01850
CpN1_RS01855	SM00014	Acid phosphatase homologues
CpN1_RS01925	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS01960	SM00316	Ribosomal protein S1-like RNA-binding domain
CpN1_RS01975	SM00363	S4 RNA-binding domain
CpN1_RS01975	SM01390	CpN1_RS01975
CpN1_RS01980	SM00662	RNA polymerases D
CpN1_RS02015	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS02070	SM01005	Alanine racemase, C-terminal domain
CpN1_RS02105	SM00883	Chaperonin 10 Kd subunit
CpN1_RS02130	SM00116	Domain in cystathionine beta-synthase and other proteins.
CpN1_RS02130	SM01240	CpN1_RS02130
CpN1_RS02135	SM01240	CpN1_RS02135
CpN1_RS02165	SM00421	helix_turn_helix, Lux Regulon
CpN1_RS02165	SM00448	cheY-homologous receiver domain
CpN1_RS02185	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS02220	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS02235	SM00529	Helix-turn-helix diphteria tox regulatory element
CpN1_RS02235	SM00899	CpN1_RS02235
CpN1_RS02255	SM00507	HNH nucleases
CpN1_RS02285	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS02310	SM00422	helix_turn_helix, mercury resistance
CpN1_RS02365	SM00530	Helix-turn-helix XRE-family like proteins 
CpN1_RS02385	SM00878	Biotin carboxylase C-terminal domain
CpN1_RS02400	SM00878	Biotin carboxylase C-terminal domain
CpN1_RS02405	SM00450	Rhodanese Homology Domain
CpN1_RS02435	SM00354	helix_turn _helix lactose operon repressor
CpN1_RS02470	SM01001	AIR carboxylase
CpN1_RS02560	SM00996	S-adenosyl-L-homocysteine hydrolase
CpN1_RS02560	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CpN1_RS02570	SM00448	cheY-homologous receiver domain
CpN1_RS02570	SM00862	Transcriptional regulatory protein, C terminal
CpN1_RS02575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CpN1_RS02575	SM00387	Histidine kinase-like ATPases
CpN1_RS02575	SM00388	His Kinase A (phosphoacceptor) domain
CpN1_RS02580	SM00909	Sporulation and spore germination
CpN1_RS02595	SM00957	SecA DEAD-like domain
CpN1_RS02595	SM00958	SecA preprotein cross-linking domain
CpN1_RS02675	SM00487	DEAD-like helicases superfamily
CpN1_RS02675	SM00490	helicase superfamily c-terminal domain
CpN1_RS02715	SM00341	Helicase and RNase D C-terminal
CpN1_RS02735	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CpN1_RS02810	SM00823	Phosphopantetheine attachment site
CpN1_RS02860	SM00937	CpN1_RS02860
CpN1_RS02875	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS02890	SM00947	Carbonic anhydrase
CpN1_RS02910	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS02975	SM00387	Histidine kinase-like ATPases
CpN1_RS02980	SM00421	helix_turn_helix, Lux Regulon
CpN1_RS02980	SM00448	cheY-homologous receiver domain
CpN1_RS03050	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CpN1_RS03110	SM00855	Phosphoglycerate mutase family
CpN1_RS03125	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CpN1_RS03125	SM00866	CpN1_RS03125
CpN1_RS03135	SM00563	Phosphate acyltransferases
CpN1_RS03145	SM00644	CpN1_RS03145
CpN1_RS03145	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
CpN1_RS03160	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03185	SM00014	Acid phosphatase homologues
CpN1_RS03200	SM00014	Acid phosphatase homologues
CpN1_RS03235	SM01110	CpN1_RS03235
CpN1_RS03245	SM00823	Phosphopantetheine attachment site
CpN1_RS03245	SM00824	Thioesterase
CpN1_RS03245	SM00825	Beta-ketoacyl synthase
CpN1_RS03245	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CpN1_RS03360	SM00984	UDP binding domain
CpN1_RS03410	SM00988	UreE urease accessory protein, N-terminal domain
CpN1_RS03440	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03445	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CpN1_RS03480	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03485	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03520	SM00271	DnaJ molecular chaperone homology domain
CpN1_RS03525	SM00422	helix_turn_helix, mercury resistance
CpN1_RS03545	SM00829	Enoylreductase
CpN1_RS03570	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03625	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03630	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03630	SM01086	C-terminal, D2-small domain, of ClpB protein
CpN1_RS03670	SM00450	Rhodanese Homology Domain
CpN1_RS03720	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03750	SM00788	Adenylosuccinate synthetase
CpN1_RS03765	SM00028	Tetratricopeptide repeats
CpN1_RS03840	SM00220	Serine/Threonine protein kinases, catalytic domain
CpN1_RS03845	SM00062	Bacterial periplasmic substrate-binding proteins
CpN1_RS03860	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS03870	SM00155	Phospholipase D. Active site motifs.
CpN1_RS03980	SM00823	Phosphopantetheine attachment site
CpN1_RS03985	SM00347	helix_turn_helix multiple antibiotic resistance protein
CpN1_RS04000	SM00450	Rhodanese Homology Domain
CpN1_RS04025	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04040	SM00905	Dihydroneopterin aldolase
CpN1_RS04095	SM00244	prohibitin homologues
CpN1_RS04130	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04130	SM01086	C-terminal, D2-small domain, of ClpB protein
CpN1_RS04140	SM00478	endonuclease III
CpN1_RS04140	SM00525	CpN1_RS04140
CpN1_RS04145	SM00947	Carbonic anhydrase
CpN1_RS04155	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04175	SM01058	CarD-like/TRCF domain
CpN1_RS04190	SM00840	CpN1_RS04190
CpN1_RS04195	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CpN1_RS04205	SM00354	helix_turn _helix lactose operon repressor
CpN1_RS04275	SM00448	cheY-homologous receiver domain
CpN1_RS04275	SM00862	Transcriptional regulatory protein, C terminal
CpN1_RS04280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CpN1_RS04280	SM00387	Histidine kinase-like ATPases
CpN1_RS04280	SM00388	His Kinase A (phosphoacceptor) domain
CpN1_RS04295	SM01209	CpN1_RS04295
CpN1_RS04295	SM01210	CpN1_RS04295
CpN1_RS04310	SM00998	Adenylosuccinate lyase C-terminus
CpN1_RS04340	SM01211	CpN1_RS04340
CpN1_RS04400	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CpN1_RS04430	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04455	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04460	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04525	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CpN1_RS04525	SM00421	helix_turn_helix, Lux Regulon
CpN1_RS04570	SM00363	S4 RNA-binding domain
CpN1_RS04640	SM00363	S4 RNA-binding domain
CpN1_RS04690	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04725	SM00957	SecA DEAD-like domain
CpN1_RS04725	SM00958	SecA preprotein cross-linking domain
CpN1_RS04730	SM00240	Forkhead associated domain
CpN1_RS04735	SM00422	helix_turn_helix, mercury resistance
CpN1_RS04745	SM00422	helix_turn_helix, mercury resistance
CpN1_RS04750	SM00327	von Willebrand factor (vWF) type A domain
CpN1_RS04765	SM01091	Transporter associated domain
CpN1_RS04770	SM00487	DEAD-like helicases superfamily
CpN1_RS04770	SM00490	helicase superfamily c-terminal domain
CpN1_RS04775	SM01350	CpN1_RS04775
CpN1_RS04815	SM00867	YceI-like domain 
CpN1_RS04890	SM00487	DEAD-like helicases superfamily
CpN1_RS04890	SM00490	helicase superfamily c-terminal domain
CpN1_RS04890	SM01142	CpN1_RS04890
CpN1_RS04930	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS04985	SM01018	B12 binding domain
CpN1_RS05040	SM01120	CpN1_RS05040
CpN1_RS05095	SM00244	prohibitin homologues
CpN1_RS05170	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS05215	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS05235	SM00861	Transketolase, pyrimidine binding domain
CpN1_RS05280	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CpN1_RS05300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CpN1_RS05300	SM00465	GIY-YIG type nucleases (URI domain)
CpN1_RS05365	SM01409	CpN1_RS05365
CpN1_RS05370	SM00072	Guanylate kinase homologues.
CpN1_RS05380	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CpN1_RS05385	SM00851	MGS-like domain
CpN1_RS05385	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CpN1_RS05390	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CpN1_RS05430	SM00841	Elongation factor P, C-terminal
CpN1_RS05430	SM01185	CpN1_RS05430
CpN1_RS05475	SM00732	Likely ribonuclease with RNase H fold.
CpN1_RS05480	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CpN1_RS05485	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS05505	SM00487	DEAD-like helicases superfamily
CpN1_RS05505	SM00490	helicase superfamily c-terminal domain
CpN1_RS05555	SM00849	Metallo-beta-lactamase superfamily
CpN1_RS05575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CpN1_RS05575	SM00954	Region found in RelA / SpoT proteins
CpN1_RS05600	SM01323	CpN1_RS05600
CpN1_RS05605	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS05670	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CpN1_RS05740	SM00474	3'-5' exonuclease
CpN1_RS05745	SM00861	Transketolase, pyrimidine binding domain
CpN1_RS05800	SM00487	DEAD-like helicases superfamily
CpN1_RS05830	SM00529	Helix-turn-helix diphteria tox regulatory element
CpN1_RS05850	SM00487	DEAD-like helicases superfamily
CpN1_RS05850	SM00490	helicase superfamily c-terminal domain
CpN1_RS05875	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS05875	SM00487	DEAD-like helicases superfamily
CpN1_RS05875	SM00490	helicase superfamily c-terminal domain
CpN1_RS05875	SM00847	Helicase associated domain (HA2)  Add an annotation
CpN1_RS05895	SM00420	helix_turn_helix, Deoxyribose operon repressor
CpN1_RS05895	SM01134	CpN1_RS05895
CpN1_RS05905	SM00420	helix_turn_helix, Deoxyribose operon repressor
CpN1_RS05905	SM01134	CpN1_RS05905
CpN1_RS05985	SM00729	Elongator protein 3, MiaB family, Radical SAM
CpN1_RS05995	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS06010	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS06025	SM00530	Helix-turn-helix XRE-family like proteins 
CpN1_RS06050	SM00843	CpN1_RS06050
CpN1_RS06060	SM00849	Metallo-beta-lactamase superfamily
CpN1_RS06065	SM01130	CpN1_RS06065
CpN1_RS06080	SM00316	Ribosomal protein S1-like RNA-binding domain
CpN1_RS06080	SM00322	K homology RNA-binding domain
CpN1_RS06085	SM01387	CpN1_RS06085
CpN1_RS06095	SM00904	Riboflavin kinase
CpN1_RS06130	SM00173	Ras subfamily of RAS small GTPases
CpN1_RS06140	SM00322	K homology RNA-binding domain
CpN1_RS06175	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CpN1_RS06195	SM00327	von Willebrand factor (vWF) type A domain
CpN1_RS06200	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS06245	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CpN1_RS06310	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS06335	SM00316	Ribosomal protein S1-like RNA-binding domain
CpN1_RS06335	SM00732	Likely ribonuclease with RNase H fold.
CpN1_RS06370	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS06370	SM00962	SRP54-type protein, GTPase domain
CpN1_RS06370	SM00963	SRP54-type protein, helical bundle domain
CpN1_RS06375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CpN1_RS06380	SM00938	Nitrogen regulatory protein P-II
CpN1_RS06385	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS06385	SM00962	SRP54-type protein, GTPase domain
CpN1_RS06385	SM00963	SRP54-type protein, helical bundle domain
CpN1_RS06410	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CpN1_RS06410	SM01232	CpN1_RS06410
CpN1_RS06415	SM00358	Double-stranded RNA binding motif
CpN1_RS06415	SM00535	Ribonuclease III family
CpN1_RS06435	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CpN1_RS06435	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CpN1_RS06440	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CpN1_RS06565	SM00642	Alpha-amylase domain
CpN1_RS06570	SM00479	CpN1_RS06570
CpN1_RS06580	SM00954	Region found in RelA / SpoT proteins
CpN1_RS06585	SM00363	S4 RNA-binding domain
CpN1_RS06605	SM00481	DNA polymerase alpha chain like domain
CpN1_RS06640	SM00870	CpN1_RS06640
CpN1_RS06680	SM00864	Tubulin/FtsZ family, GTPase domain
CpN1_RS06680	SM00865	Tubulin/FtsZ family, C-terminal domain
CpN1_RS06780	SM00220	Serine/Threonine protein kinases, catalytic domain
CpN1_RS06780	SM00740	CpN1_RS06780
CpN1_RS06800	SM00563	Phosphate acyltransferases
CpN1_RS06930	SM00729	Elongator protein 3, MiaB family, Radical SAM
CpN1_RS06945	SM01230	CpN1_RS06945
CpN1_RS07060	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07085	SM00116	Domain in cystathionine beta-synthase and other proteins.
CpN1_RS07085	SM01240	CpN1_RS07085
CpN1_RS07130	SM01230	CpN1_RS07130
CpN1_RS07140	SM00880	CpN1_RS07140
CpN1_RS07140	SM01118	CpN1_RS07140
CpN1_RS07155	SM00955	CpN1_RS07155
CpN1_RS07160	SM00855	Phosphoglycerate mutase family
CpN1_RS07185	SM00226	Low molecular weight phosphatase family
CpN1_RS07265	SM00400	zinc finger
CpN1_RS07265	SM00493	CpN1_RS07265
CpN1_RS07265	SM00766	DNA primase DnaG DnaB-binding
CpN1_RS07285	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CpN1_RS07315	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CpN1_RS07350	SM01091	Transporter associated domain
CpN1_RS07360	SM00322	K homology RNA-binding domain
CpN1_RS07370	SM00271	DnaJ molecular chaperone homology domain
CpN1_RS07380	SM00729	Elongator protein 3, MiaB family, Radical SAM
CpN1_RS07450	SM00507	HNH nucleases
CpN1_RS07485	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07525	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07530	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07540	SM00838	Elongation factor G C-terminus
CpN1_RS07560	SM00248	ankyrin repeats
CpN1_RS07585	SM00855	Phosphoglycerate mutase family
CpN1_RS07620	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CpN1_RS07640	SM00316	Ribosomal protein S1-like RNA-binding domain
CpN1_RS07650	SM00562	CpN1_RS07650
CpN1_RS07685	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07685	SM00994	ClpX C4-type zinc finger
CpN1_RS07685	SM01086	C-terminal, D2-small domain, of ClpB protein
CpN1_RS07780	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07830	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS07855	SM00829	Enoylreductase
CpN1_RS07860	SM00822	CpN1_RS07860
CpN1_RS07865	SM00479	CpN1_RS07865
CpN1_RS07875	SM01130	CpN1_RS07875
CpN1_RS07890	SM00829	Enoylreductase
CpN1_RS07925	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CpN1_RS07940	SM00421	helix_turn_helix, Lux Regulon
CpN1_RS07940	SM00448	cheY-homologous receiver domain
CpN1_RS08015	SM00487	DEAD-like helicases superfamily
CpN1_RS08015	SM00491	CpN1_RS08015
CpN1_RS08105	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CpN1_RS08175	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08200	SM00363	S4 RNA-binding domain
CpN1_RS08245	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CpN1_RS08250	SM00873	B3/4 domain
CpN1_RS08250	SM00874	tRNA synthetase B5 domain
CpN1_RS08250	SM00896	Ferredoxin-fold anticodon binding domain
CpN1_RS08260	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CpN1_RS08290	SM00849	Metallo-beta-lactamase superfamily
CpN1_RS08300	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08310	SM00487	DEAD-like helicases superfamily
CpN1_RS08310	SM00490	helicase superfamily c-terminal domain
CpN1_RS08330	SM00316	Ribosomal protein S1-like RNA-binding domain
CpN1_RS08340	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CpN1_RS08340	SM00474	3'-5' exonuclease
CpN1_RS08340	SM00475	5'-3' exonuclease
CpN1_RS08340	SM00482	DNA polymerase A domain
CpN1_RS08355	SM00062	Bacterial periplasmic substrate-binding proteins
CpN1_RS08365	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08395	SM00487	DEAD-like helicases superfamily
CpN1_RS08395	SM00490	helicase superfamily c-terminal domain
CpN1_RS08400	SM01120	CpN1_RS08400
CpN1_RS08400	SM01121	CpN1_RS08400
CpN1_RS08405	SM00986	Uracil DNA glycosylase superfamily
CpN1_RS08405	SM00987	UreE urease accessory protein, C-terminal domain 
CpN1_RS08445	SM00346	helix_turn_helix isocitrate lyase regulation
CpN1_RS08450	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CpN1_RS08455	SM00729	Elongator protein 3, MiaB family, Radical SAM
CpN1_RS08455	SM00876	Biotin and Thiamin Synthesis associated domain
CpN1_RS08465	SM01110	CpN1_RS08465
CpN1_RS08505	SM00479	CpN1_RS08505
CpN1_RS08510	SM00100	Cyclic nucleotide-monophosphate binding domain
CpN1_RS08510	SM00116	Domain in cystathionine beta-synthase and other proteins.
CpN1_RS08515	SM01329	CpN1_RS08515
CpN1_RS08595	SM00845	GatB domain
CpN1_RS08610	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08650	SM00292	breast cancer carboxy-terminal domain
CpN1_RS08650	SM00532	Ligase N family
CpN1_RS08655	SM00479	CpN1_RS08655
CpN1_RS08680	SM00893	Electron transfer flavoprotein domain
CpN1_RS08685	SM00893	Electron transfer flavoprotein domain
CpN1_RS08700	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08705	SM00642	Alpha-amylase domain
CpN1_RS08710	SM00642	Alpha-amylase domain
CpN1_RS08745	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08800	SM00937	CpN1_RS08800
CpN1_RS08805	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS08805	SM00959	Rho termination factor, N-terminal domain
CpN1_RS08835	SM00836	DALR anticodon binding domain
CpN1_RS08835	SM01016	Arginyl tRNA synthetase N terminal dom
CpN1_RS08885	SM00347	helix_turn_helix multiple antibiotic resistance protein
CpN1_RS08890	SM00867	YceI-like domain 
CpN1_RS08910	SM00487	DEAD-like helicases superfamily
CpN1_RS08910	SM00490	helicase superfamily c-terminal domain
CpN1_RS08940	SM00487	DEAD-like helicases superfamily
CpN1_RS08940	SM00490	helicase superfamily c-terminal domain
CpN1_RS08995	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09000	SM00861	Transketolase, pyrimidine binding domain
CpN1_RS09010	SM00924	MgtE intracellular N domain
CpN1_RS09060	SM00640	Glycosyl hydrolases family 32
CpN1_RS09170	SM00020	Trypsin-like serine protease
CpN1_RS09175	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09210	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09230	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09235	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09240	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09395	SM00342	helix_turn_helix, arabinose operon control protein
CpN1_RS09420	SM01192	CpN1_RS09420
CpN1_RS09420	SM01193	CpN1_RS09420
CpN1_RS09440	SM00487	DEAD-like helicases superfamily
CpN1_RS09440	SM00490	helicase superfamily c-terminal domain
CpN1_RS09440	SM00982	CpN1_RS09440
CpN1_RS09440	SM01058	CarD-like/TRCF domain
CpN1_RS09470	SM01400	CpN1_RS09470
CpN1_RS09475	SM00642	Alpha-amylase domain
CpN1_RS09505	SM00822	CpN1_RS09505
CpN1_RS09525	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CpN1_RS09565	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09575	SM00650	Ribosomal RNA adenine dimethylases
CpN1_RS09580	SM01208	CpN1_RS09580
CpN1_RS09635	SM00852	Probable molybdopterin binding domain
CpN1_RS09660	SM00852	Probable molybdopterin binding domain
CpN1_RS09665	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CpN1_RS09670	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CpN1_RS09670	SM00387	Histidine kinase-like ATPases
CpN1_RS09670	SM00388	His Kinase A (phosphoacceptor) domain
CpN1_RS09675	SM00448	cheY-homologous receiver domain
CpN1_RS09675	SM00862	Transcriptional regulatory protein, C terminal
CpN1_RS09735	SM00062	Bacterial periplasmic substrate-binding proteins
CpN1_RS09740	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09745	SM00798	AICARFT/IMPCHase bienzyme
CpN1_RS09745	SM00851	MGS-like domain
CpN1_RS09770	SM00830	Chorismate mutase type II
CpN1_RS09790	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CpN1_RS09790	SM01232	CpN1_RS09790
CpN1_RS09800	SM00487	DEAD-like helicases superfamily
CpN1_RS09800	SM00490	helicase superfamily c-terminal domain
CpN1_RS09840	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS09985	SM00357	Cold shock protein domain
CpN1_RS10005	SM00487	DEAD-like helicases superfamily
CpN1_RS10005	SM00490	helicase superfamily c-terminal domain
CpN1_RS10050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CpN1_RS10085	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS10130	SM00347	helix_turn_helix multiple antibiotic resistance protein
CpN1_RS10150	SM00450	Rhodanese Homology Domain
CpN1_RS10165	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CpN1_RS10165	SM01232	CpN1_RS10165
CpN1_RS10190	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS10215	SM00421	helix_turn_helix, Lux Regulon
CpN1_RS10215	SM00448	cheY-homologous receiver domain
CpN1_RS10245	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CpN1_RS10245	SM00895	CpN1_RS10245
CpN1_RS10260	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS10265	SM00382	ATPases associated with a variety of cellular activities
CpN1_RS10270	SM01130	CpN1_RS10270
CpN1_RS10445	SM00646	CpN1_RS10445
CpN1_RS10455	SM00470	ParB-like nuclease domain
CpN1_RS10475	SM01234	CpN1_RS10475
