CpPa04_RS00305	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CpPa04_RS00320	PWY-6617	adenosine nucleotides degradation III
CpPa04_RS00345	PWY-6857	retinol biosynthesis
CpPa04_RS00470	PWY-4261	glycerol degradation I
CpPa04_RS00655	PWY-3781	aerobic respiration I (cytochrome c)
CpPa04_RS00655	PWY-4521	arsenite oxidation I (respiratory)
CpPa04_RS00655	PWY-6692	Fe(II) oxidation
CpPa04_RS00655	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CpPa04_RS00675	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CpPa04_RS00680	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CpPa04_RS00685	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CpPa04_RS00710	PWY-6700	queuosine biosynthesis
CpPa04_RS00725	PWY-5530	sorbitol biosynthesis II
CpPa04_RS00725	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS00825	PWY-6871	3-methylbutanol biosynthesis
CpPa04_RS00835	PWY-4202	arsenate detoxification I (glutaredoxin)
CpPa04_RS00835	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CpPa04_RS00835	PWY-6608	guanosine nucleotides degradation III
CpPa04_RS00835	PWY-6609	adenine and adenosine salvage III
CpPa04_RS00835	PWY-6611	adenine and adenosine salvage V
CpPa04_RS00835	PWY-6620	guanine and guanosine salvage
CpPa04_RS00835	PWY-6627	salinosporamide A biosynthesis
CpPa04_RS00835	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CpPa04_RS00835	PWY-7179	purine deoxyribonucleosides degradation I
CpPa04_RS00835	PWY-7179-1	purine deoxyribonucleosides degradation
CpPa04_RS00845	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CpPa04_RS00850	PWY-6749	CMP-legionaminate biosynthesis I
CpPa04_RS00880	PWY-2941	L-lysine biosynthesis II
CpPa04_RS00880	PWY-2942	L-lysine biosynthesis III
CpPa04_RS00880	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS00880	PWY-6559	spermidine biosynthesis II
CpPa04_RS00880	PWY-6562	norspermidine biosynthesis
CpPa04_RS00880	PWY-7153	grixazone biosynthesis
CpPa04_RS00890	PWY-2941	L-lysine biosynthesis II
CpPa04_RS00890	PWY-2942	L-lysine biosynthesis III
CpPa04_RS00890	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS00890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS00890	PWY-6559	spermidine biosynthesis II
CpPa04_RS00890	PWY-6562	norspermidine biosynthesis
CpPa04_RS00890	PWY-7153	grixazone biosynthesis
CpPa04_RS00890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS01195	PWY-3221	dTDP-L-rhamnose biosynthesis II
CpPa04_RS01195	PWY-6808	dTDP-D-forosamine biosynthesis
CpPa04_RS01195	PWY-6942	dTDP-D-desosamine biosynthesis
CpPa04_RS01195	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CpPa04_RS01195	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CpPa04_RS01195	PWY-6974	dTDP-L-olivose biosynthesis
CpPa04_RS01195	PWY-6976	dTDP-L-mycarose biosynthesis
CpPa04_RS01195	PWY-7104	dTDP-L-megosamine biosynthesis
CpPa04_RS01195	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CpPa04_RS01195	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CpPa04_RS01195	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CpPa04_RS01195	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CpPa04_RS01195	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CpPa04_RS01195	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CpPa04_RS01195	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CpPa04_RS01195	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CpPa04_RS01195	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CpPa04_RS01195	PWY-7688	CpPa04_RS01195
CpPa04_RS01205	PWY-3221	dTDP-L-rhamnose biosynthesis II
CpPa04_RS01205	PWY-6808	dTDP-D-forosamine biosynthesis
CpPa04_RS01205	PWY-6942	dTDP-D-desosamine biosynthesis
CpPa04_RS01205	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CpPa04_RS01205	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CpPa04_RS01205	PWY-6974	dTDP-L-olivose biosynthesis
CpPa04_RS01205	PWY-6976	dTDP-L-mycarose biosynthesis
CpPa04_RS01205	PWY-7104	dTDP-L-megosamine biosynthesis
CpPa04_RS01205	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CpPa04_RS01205	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CpPa04_RS01205	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CpPa04_RS01205	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CpPa04_RS01205	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CpPa04_RS01205	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CpPa04_RS01205	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CpPa04_RS01205	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CpPa04_RS01205	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CpPa04_RS01205	PWY-7688	CpPa04_RS01205
CpPa04_RS01230	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CpPa04_RS01230	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CpPa04_RS01245	PWY-3781	aerobic respiration I (cytochrome c)
CpPa04_RS01245	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CpPa04_RS01245	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CpPa04_RS01245	PWY-5690	TCA cycle II (plants and fungi)
CpPa04_RS01245	PWY-6728	methylaspartate cycle
CpPa04_RS01245	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CpPa04_RS01245	PWY-7254	TCA cycle VII (acetate-producers)
CpPa04_RS01245	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CpPa04_RS01250	PWY-3781	aerobic respiration I (cytochrome c)
CpPa04_RS01250	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CpPa04_RS01250	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CpPa04_RS01250	PWY-5690	TCA cycle II (plants and fungi)
CpPa04_RS01250	PWY-6728	methylaspartate cycle
CpPa04_RS01250	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CpPa04_RS01250	PWY-7254	TCA cycle VII (acetate-producers)
CpPa04_RS01250	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CpPa04_RS01290	PWY-5480	pyruvate fermentation to ethanol I
CpPa04_RS01290	PWY-5485	pyruvate fermentation to acetate IV
CpPa04_RS01290	PWY-5493	reductive monocarboxylic acid cycle
CpPa04_RS01305	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS01305	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS01315	PWY-5941	glycogen degradation II (eukaryotic)
CpPa04_RS01315	PWY-6724	starch degradation II
CpPa04_RS01315	PWY-6737	starch degradation V
CpPa04_RS01315	PWY-7238	sucrose biosynthesis II
CpPa04_RS01320	PWY-1622	formaldehyde assimilation I (serine pathway)
CpPa04_RS01320	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS01350	PWY-3341	L-proline biosynthesis III
CpPa04_RS01350	PWY-4981	L-proline biosynthesis II (from arginine)
CpPa04_RS01350	PWY-6344	L-ornithine degradation II (Stickland reaction)
CpPa04_RS01390	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CpPa04_RS01395	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CpPa04_RS01395	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CpPa04_RS01400	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CpPa04_RS01400	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CpPa04_RS01400	PWY-5194	siroheme biosynthesis
CpPa04_RS01400	PWY-5441	S-methyl-L-methionine cycle
CpPa04_RS01400	PWY-702	L-methionine biosynthesis II
CpPa04_RS01400	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CpPa04_RS01405	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CpPa04_RS01405	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CpPa04_RS01420	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CpPa04_RS01420	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CpPa04_RS01425	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CpPa04_RS01435	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CpPa04_RS01495	PWY-5839	menaquinol-7 biosynthesis
CpPa04_RS01495	PWY-5851	demethylmenaquinol-9 biosynthesis
CpPa04_RS01495	PWY-5852	demethylmenaquinol-8 biosynthesis I
CpPa04_RS01495	PWY-5853	demethylmenaquinol-6 biosynthesis I
CpPa04_RS01495	PWY-5890	menaquinol-10 biosynthesis
CpPa04_RS01495	PWY-5891	menaquinol-11 biosynthesis
CpPa04_RS01495	PWY-5892	menaquinol-12 biosynthesis
CpPa04_RS01495	PWY-5895	menaquinol-13 biosynthesis
CpPa04_RS01505	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CpPa04_RS01515	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS01515	PWY-1622	formaldehyde assimilation I (serine pathway)
CpPa04_RS01515	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CpPa04_RS01515	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS01515	PWY-5723	Rubisco shunt
CpPa04_RS01515	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CpPa04_RS01515	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS01515	PWY-6886	1-butanol autotrophic biosynthesis
CpPa04_RS01515	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS01515	PWY-7003	glycerol degradation to butanol
CpPa04_RS01515	PWY-7124	ethylene biosynthesis V (engineered)
CpPa04_RS01515	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CpPa04_RS01520	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CpPa04_RS01535	PWY-5839	menaquinol-7 biosynthesis
CpPa04_RS01535	PWY-5844	menaquinol-9 biosynthesis
CpPa04_RS01535	PWY-5849	menaquinol-6 biosynthesis
CpPa04_RS01535	PWY-5890	menaquinol-10 biosynthesis
CpPa04_RS01535	PWY-5891	menaquinol-11 biosynthesis
CpPa04_RS01535	PWY-5892	menaquinol-12 biosynthesis
CpPa04_RS01535	PWY-5895	menaquinol-13 biosynthesis
CpPa04_RS01705	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS01705	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS01705	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS01880	PWY-6348	phosphate acquisition
CpPa04_RS01965	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS02080	PWY-6749	CMP-legionaminate biosynthesis I
CpPa04_RS02100	PWY-5098	chlorophyll <i>a</i> degradation I
CpPa04_RS02100	PWY-6927	chlorophyll <i>a</i> degradation II
CpPa04_RS02100	PWY-7164	chlorophyll <i>a</i> degradation III
CpPa04_RS02105	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CpPa04_RS02115	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CpPa04_RS02115	PWY-5723	Rubisco shunt
CpPa04_RS02125	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CpPa04_RS02125	PWY-5368	dimorphecolate biosynthesis
CpPa04_RS02125	PWY-5995	linoleate biosynthesis I (plants)
CpPa04_RS02125	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CpPa04_RS02125	PWY-6803	phosphatidylcholine acyl editing
CpPa04_RS02125	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CpPa04_RS02125	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CpPa04_RS02125	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CpPa04_RS02125	PWY-7470	phosphatidylcholine biosynthesis VII
CpPa04_RS02125	PWY-7618	ricinoleate biosynthesis
CpPa04_RS02135	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CpPa04_RS02135	PWY-5368	dimorphecolate biosynthesis
CpPa04_RS02135	PWY-5995	linoleate biosynthesis I (plants)
CpPa04_RS02135	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CpPa04_RS02135	PWY-6803	phosphatidylcholine acyl editing
CpPa04_RS02135	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CpPa04_RS02135	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CpPa04_RS02135	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CpPa04_RS02135	PWY-7470	phosphatidylcholine biosynthesis VII
CpPa04_RS02135	PWY-7618	ricinoleate biosynthesis
CpPa04_RS02170	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CpPa04_RS02170	PWY-6596	adenosine nucleotides degradation I
CpPa04_RS02170	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS02185	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS02280	PWY-6004	glycine betaine biosynthesis V (from glycine)
CpPa04_RS02285	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CpPa04_RS02285	PWY-2201	folate transformations I
CpPa04_RS02285	PWY-3841	folate transformations II
CpPa04_RS02285	PWY-5030	L-histidine degradation III
CpPa04_RS02285	PWY-5497	purine nucleobases degradation II (anaerobic)
CpPa04_RS02285	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CpPa04_RS02340	PWY-5913	TCA cycle VI (obligate autotrophs)
CpPa04_RS02340	PWY-6549	L-glutamine biosynthesis III
CpPa04_RS02340	PWY-6728	methylaspartate cycle
CpPa04_RS02340	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CpPa04_RS02340	PWY-7124	ethylene biosynthesis V (engineered)
CpPa04_RS02340	PWY-7254	TCA cycle VII (acetate-producers)
CpPa04_RS02340	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CpPa04_RS02400	PWY-7183	pyrimidine nucleobases salvage I
CpPa04_RS02410	PWY-6749	CMP-legionaminate biosynthesis I
CpPa04_RS02425	PWY-5750	itaconate biosynthesis
CpPa04_RS02425	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS02425	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CpPa04_RS02445	PWY-5350	thiosulfate disproportionation III (rhodanese)
CpPa04_RS02485	PWY-4381	fatty acid biosynthesis initiation I
CpPa04_RS02485	PWY-5743	3-hydroxypropanoate cycle
CpPa04_RS02485	PWY-5744	glyoxylate assimilation
CpPa04_RS02485	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CpPa04_RS02485	PWY-6679	jadomycin biosynthesis
CpPa04_RS02485	PWY-6722	candicidin biosynthesis
CpPa04_RS02485	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CpPa04_RS02490	PWY-4381	fatty acid biosynthesis initiation I
CpPa04_RS02490	PWY-5743	3-hydroxypropanoate cycle
CpPa04_RS02490	PWY-5744	glyoxylate assimilation
CpPa04_RS02490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CpPa04_RS02490	PWY-6679	jadomycin biosynthesis
CpPa04_RS02490	PWY-6722	candicidin biosynthesis
CpPa04_RS02490	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CpPa04_RS02510	PWY-6123	inosine-5'-phosphate biosynthesis I
CpPa04_RS02510	PWY-7234	inosine-5'-phosphate biosynthesis III
CpPa04_RS02580	PWY-6749	CMP-legionaminate biosynthesis I
CpPa04_RS02590	PWY-3861	mannitol degradation II
CpPa04_RS02590	PWY-3881	mannitol biosynthesis
CpPa04_RS02590	PWY-5659	GDP-mannose biosynthesis
CpPa04_RS02590	PWY-6992	1,5-anhydrofructose degradation
CpPa04_RS02590	PWY-7456	mannan degradation
CpPa04_RS02590	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CpPa04_RS02590	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CpPa04_RS02605	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CpPa04_RS02610	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS02610	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS02610	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS02610	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CpPa04_RS02610	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CpPa04_RS02610	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CpPa04_RS02675	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS02840	PWY-6523	nitrite-dependent anaerobic methane oxidation
CpPa04_RS02840	PWY-6748	nitrate reduction VII (denitrification)
CpPa04_RS02840	PWY-7084	nitrifier denitrification
CpPa04_RS02885	PWY-4381	fatty acid biosynthesis initiation I
CpPa04_RS02885	PWY-5743	3-hydroxypropanoate cycle
CpPa04_RS02885	PWY-5744	glyoxylate assimilation
CpPa04_RS02885	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CpPa04_RS02885	PWY-6679	jadomycin biosynthesis
CpPa04_RS02885	PWY-6722	candicidin biosynthesis
CpPa04_RS02885	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CpPa04_RS02955	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CpPa04_RS02955	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS02955	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CpPa04_RS02955	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CpPa04_RS03090	PWY-4381	fatty acid biosynthesis initiation I
CpPa04_RS03090	PWY-5743	3-hydroxypropanoate cycle
CpPa04_RS03090	PWY-5744	glyoxylate assimilation
CpPa04_RS03090	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CpPa04_RS03090	PWY-6679	jadomycin biosynthesis
CpPa04_RS03090	PWY-6722	candicidin biosynthesis
CpPa04_RS03090	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CpPa04_RS03095	PWY-6854	ethylene biosynthesis III (microbes)
CpPa04_RS03200	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CpPa04_RS03210	PWY-3841	folate transformations II
CpPa04_RS03210	PWY-6614	tetrahydrofolate biosynthesis
CpPa04_RS03215	PWY-3841	folate transformations II
CpPa04_RS03215	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS03215	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS03215	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CpPa04_RS03215	PWY-7199	pyrimidine deoxyribonucleosides salvage
CpPa04_RS03215	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CpPa04_RS03250	PWY-3801	sucrose degradation II (sucrose synthase)
CpPa04_RS03250	PWY-5054	sorbitol biosynthesis I
CpPa04_RS03250	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CpPa04_RS03250	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CpPa04_RS03250	PWY-5659	GDP-mannose biosynthesis
CpPa04_RS03250	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS03250	PWY-621	sucrose degradation III (sucrose invertase)
CpPa04_RS03250	PWY-622	starch biosynthesis
CpPa04_RS03250	PWY-6981	chitin biosynthesis
CpPa04_RS03250	PWY-6992	1,5-anhydrofructose degradation
CpPa04_RS03250	PWY-7238	sucrose biosynthesis II
CpPa04_RS03250	PWY-7347	sucrose biosynthesis III
CpPa04_RS03250	PWY-7385	1,3-propanediol biosynthesis (engineered)
CpPa04_RS03260	PWY-3461	L-tyrosine biosynthesis II
CpPa04_RS03260	PWY-3462	L-phenylalanine biosynthesis II
CpPa04_RS03260	PWY-6120	L-tyrosine biosynthesis III
CpPa04_RS03260	PWY-6627	salinosporamide A biosynthesis
CpPa04_RS03260	PWY-7626	bacilysin biosynthesis
CpPa04_RS03280	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS03280	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CpPa04_RS03285	PWY-6123	inosine-5'-phosphate biosynthesis I
CpPa04_RS03285	PWY-6124	inosine-5'-phosphate biosynthesis II
CpPa04_RS03285	PWY-7234	inosine-5'-phosphate biosynthesis III
CpPa04_RS03400	PWY-6823	molybdenum cofactor biosynthesis
CpPa04_RS03425	PWY-822	fructan biosynthesis
CpPa04_RS03445	PWY-2201	folate transformations I
CpPa04_RS03470	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS03520	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS03520	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS03520	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS03520	PWY-7003	glycerol degradation to butanol
CpPa04_RS03545	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CpPa04_RS03560	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CpPa04_RS03580	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CpPa04_RS03580	PWY-5667	CDP-diacylglycerol biosynthesis I
CpPa04_RS03580	PWY-6453	stigma estolide biosynthesis
CpPa04_RS03580	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CpPa04_RS03580	PWY-7587	oleate biosynthesis III (cyanobacteria)
CpPa04_RS03625	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS03625	PWY-1622	formaldehyde assimilation I (serine pathway)
CpPa04_RS03625	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CpPa04_RS03625	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS03625	PWY-5723	Rubisco shunt
CpPa04_RS03625	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS03625	PWY-6886	1-butanol autotrophic biosynthesis
CpPa04_RS03625	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS03625	PWY-7003	glycerol degradation to butanol
CpPa04_RS03625	PWY-7124	ethylene biosynthesis V (engineered)
CpPa04_RS03625	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CpPa04_RS03700	PWY-3961	phosphopantothenate biosynthesis II
CpPa04_RS03705	PWY-1622	formaldehyde assimilation I (serine pathway)
CpPa04_RS03705	PWY-181	photorespiration
CpPa04_RS03705	PWY-2161	folate polyglutamylation
CpPa04_RS03705	PWY-2201	folate transformations I
CpPa04_RS03705	PWY-3661	glycine betaine degradation I
CpPa04_RS03705	PWY-3661-1	glycine betaine degradation II (mammalian)
CpPa04_RS03705	PWY-3841	folate transformations II
CpPa04_RS03705	PWY-5497	purine nucleobases degradation II (anaerobic)
CpPa04_RS03750	PWY-5392	reductive TCA cycle II
CpPa04_RS03750	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CpPa04_RS03750	PWY-5690	TCA cycle II (plants and fungi)
CpPa04_RS03750	PWY-5913	TCA cycle VI (obligate autotrophs)
CpPa04_RS03750	PWY-6728	methylaspartate cycle
CpPa04_RS03750	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CpPa04_RS03750	PWY-7254	TCA cycle VII (acetate-producers)
CpPa04_RS03750	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CpPa04_RS03755	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS03830	PWY-6654	phosphopantothenate biosynthesis III
CpPa04_RS03885	PWY-4202	arsenate detoxification I (glutaredoxin)
CpPa04_RS03885	PWY-4621	arsenate detoxification II (glutaredoxin)
CpPa04_RS03910	PWY-2201	folate transformations I
CpPa04_RS03910	PWY-5497	purine nucleobases degradation II (anaerobic)
CpPa04_RS03970	PWY-6614	tetrahydrofolate biosynthesis
CpPa04_RS04005	PWY-622	starch biosynthesis
CpPa04_RS04010	PWY-622	starch biosynthesis
CpPa04_RS04055	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CpPa04_RS04070	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS04110	PWY-6317	galactose degradation I (Leloir pathway)
CpPa04_RS04110	PWY-6527	stachyose degradation
CpPa04_RS04115	PWY-3821	galactose degradation III
CpPa04_RS04115	PWY-6317	galactose degradation I (Leloir pathway)
CpPa04_RS04115	PWY-6527	stachyose degradation
CpPa04_RS04230	PWY-2941	L-lysine biosynthesis II
CpPa04_RS04230	PWY-2942	L-lysine biosynthesis III
CpPa04_RS04230	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS04240	PWY-702	L-methionine biosynthesis II
CpPa04_RS04255	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS04275	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CpPa04_RS04275	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CpPa04_RS04275	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CpPa04_RS04305	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS04315	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS04340	PWY-5741	ethylmalonyl-CoA pathway
CpPa04_RS04340	PWY-5743	3-hydroxypropanoate cycle
CpPa04_RS04340	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CpPa04_RS04340	PWY-6728	methylaspartate cycle
CpPa04_RS04340	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CpPa04_RS04355	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CpPa04_RS04355	PWY-622	starch biosynthesis
CpPa04_RS04390	PWY-6823	molybdenum cofactor biosynthesis
CpPa04_RS04390	PWY-6891	thiazole biosynthesis II (Bacillus)
CpPa04_RS04390	PWY-6892	thiazole biosynthesis I (E. coli)
CpPa04_RS04390	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CpPa04_RS04430	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CpPa04_RS04465	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS04465	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CpPa04_RS04465	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS04465	PWY-7385	1,3-propanediol biosynthesis (engineered)
CpPa04_RS04500	PWY-5101	L-isoleucine biosynthesis II
CpPa04_RS04500	PWY-5103	L-isoleucine biosynthesis III
CpPa04_RS04500	PWY-5104	L-isoleucine biosynthesis IV
CpPa04_RS04500	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CpPa04_RS04520	PWY-5101	L-isoleucine biosynthesis II
CpPa04_RS04520	PWY-5103	L-isoleucine biosynthesis III
CpPa04_RS04520	PWY-5104	L-isoleucine biosynthesis IV
CpPa04_RS04520	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CpPa04_RS04520	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CpPa04_RS04520	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CpPa04_RS04520	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CpPa04_RS04525	PWY-5103	L-isoleucine biosynthesis III
CpPa04_RS04525	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CpPa04_RS04550	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CpPa04_RS04575	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CpPa04_RS04575	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CpPa04_RS04575	PWY-6406	salicylate biosynthesis I
CpPa04_RS04580	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CpPa04_RS04610	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CpPa04_RS04640	PWY-5667	CDP-diacylglycerol biosynthesis I
CpPa04_RS04640	PWY-5981	CDP-diacylglycerol biosynthesis III
CpPa04_RS04645	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS04645	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS04655	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CpPa04_RS04655	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CpPa04_RS04655	PWY-6896	thiamin salvage I
CpPa04_RS04655	PWY-6897	thiamin salvage II
CpPa04_RS04680	PWY-6825	phosphatidylcholine biosynthesis V
CpPa04_RS04820	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS04820	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS04825	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS04830	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS04830	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS04840	PWY-4981	L-proline biosynthesis II (from arginine)
CpPa04_RS04840	PWY-4984	urea cycle
CpPa04_RS04840	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS04850	PWY-4983	L-citrulline-nitric oxide cycle
CpPa04_RS04850	PWY-4984	urea cycle
CpPa04_RS04850	PWY-5	canavanine biosynthesis
CpPa04_RS04850	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS04850	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS04855	PWY-4983	L-citrulline-nitric oxide cycle
CpPa04_RS04855	PWY-4984	urea cycle
CpPa04_RS04855	PWY-5	canavanine biosynthesis
CpPa04_RS04855	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS04855	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS04905	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CpPa04_RS04905	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CpPa04_RS04905	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CpPa04_RS04915	PWY-6898	thiamin salvage III
CpPa04_RS04915	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CpPa04_RS04915	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CpPa04_RS04915	PWY-7356	thiamin salvage IV (yeast)
CpPa04_RS04960	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CpPa04_RS04975	PWY-7193	pyrimidine ribonucleosides salvage I
CpPa04_RS04975	PWY-7205	CMP phosphorylation
CpPa04_RS05200	PWY-6683	sulfate reduction III (assimilatory)
CpPa04_RS05210	PWY-5194	siroheme biosynthesis
CpPa04_RS05210	PWY-5441	S-methyl-L-methionine cycle
CpPa04_RS05210	PWY-702	L-methionine biosynthesis II
CpPa04_RS05210	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CpPa04_RS05220	PWY-5194	siroheme biosynthesis
CpPa04_RS05220	PWY-5441	S-methyl-L-methionine cycle
CpPa04_RS05220	PWY-702	L-methionine biosynthesis II
CpPa04_RS05220	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CpPa04_RS05225	PWY-2201	folate transformations I
CpPa04_RS05225	PWY-3841	folate transformations II
CpPa04_RS05225	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CpPa04_RS05285	PWY-6829	tRNA methylation (yeast)
CpPa04_RS05305	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CpPa04_RS05305	PWY-2161	folate polyglutamylation
CpPa04_RS05305	PWY-2201	folate transformations I
CpPa04_RS05305	PWY-3841	folate transformations II
CpPa04_RS05310	PWY-5392	reductive TCA cycle II
CpPa04_RS05310	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CpPa04_RS05310	PWY-5690	TCA cycle II (plants and fungi)
CpPa04_RS05310	PWY-5913	TCA cycle VI (obligate autotrophs)
CpPa04_RS05310	PWY-6728	methylaspartate cycle
CpPa04_RS05310	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CpPa04_RS05310	PWY-7254	TCA cycle VII (acetate-producers)
CpPa04_RS05310	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CpPa04_RS05335	PWY-2201	folate transformations I
CpPa04_RS05335	PWY-3841	folate transformations II
CpPa04_RS05350	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CpPa04_RS05365	PWY-5686	UMP biosynthesis
CpPa04_RS05540	PWY-6823	molybdenum cofactor biosynthesis
CpPa04_RS05540	PWY-6891	thiazole biosynthesis II (Bacillus)
CpPa04_RS05540	PWY-6892	thiazole biosynthesis I (E. coli)
CpPa04_RS05540	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CpPa04_RS05590	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CpPa04_RS05590	PWY-5723	Rubisco shunt
CpPa04_RS05590	PWY-6891	thiazole biosynthesis II (Bacillus)
CpPa04_RS05590	PWY-6892	thiazole biosynthesis I (E. coli)
CpPa04_RS05590	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS05590	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS05595	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CpPa04_RS05595	PWY-5723	Rubisco shunt
CpPa04_RS05600	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CpPa04_RS05610	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CpPa04_RS05610	PWY-6855	chitin degradation I (archaea)
CpPa04_RS05610	PWY-6906	chitin derivatives degradation
CpPa04_RS05620	PWY-1622	formaldehyde assimilation I (serine pathway)
CpPa04_RS05620	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CpPa04_RS05620	PWY-5913	TCA cycle VI (obligate autotrophs)
CpPa04_RS05620	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS05620	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CpPa04_RS05620	PWY-6549	L-glutamine biosynthesis III
CpPa04_RS05620	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CpPa04_RS05620	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CpPa04_RS05620	PWY-7124	ethylene biosynthesis V (engineered)
CpPa04_RS05625	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS05625	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS05625	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS05625	PWY-7003	glycerol degradation to butanol
CpPa04_RS05630	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS05630	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS05630	PWY-6886	1-butanol autotrophic biosynthesis
CpPa04_RS05630	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS05630	PWY-7003	glycerol degradation to butanol
CpPa04_RS05635	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS05635	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS05635	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS05635	PWY-7003	glycerol degradation to butanol
CpPa04_RS05665	PWY-6167	flavin biosynthesis II (archaea)
CpPa04_RS05665	PWY-6168	flavin biosynthesis III (fungi)
CpPa04_RS05670	PWY-6167	flavin biosynthesis II (archaea)
CpPa04_RS05670	PWY-6168	flavin biosynthesis III (fungi)
CpPa04_RS05670	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CpPa04_RS05675	PWY-6167	flavin biosynthesis II (archaea)
CpPa04_RS05675	PWY-6168	flavin biosynthesis III (fungi)
CpPa04_RS05675	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS05680	PWY-5525	D-glucuronate degradation I
CpPa04_RS05685	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CpPa04_RS05685	PWY-5723	Rubisco shunt
CpPa04_RS05690	PWY-6825	phosphatidylcholine biosynthesis V
CpPa04_RS05710	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CpPa04_RS05710	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CpPa04_RS05725	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS05735	PWY-5686	UMP biosynthesis
CpPa04_RS05740	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS05740	PWY-5686	UMP biosynthesis
CpPa04_RS05740	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS05745	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CpPa04_RS05745	PWY-5686	UMP biosynthesis
CpPa04_RS05745	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CpPa04_RS05750	PWY-5686	UMP biosynthesis
CpPa04_RS05755	PWY-5686	UMP biosynthesis
CpPa04_RS05760	PWY-7183	pyrimidine nucleobases salvage I
CpPa04_RS05795	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS05795	PWY-6416	quinate degradation II
CpPa04_RS05795	PWY-6707	gallate biosynthesis
CpPa04_RS05800	PWY-6164	3-dehydroquinate biosynthesis I
CpPa04_RS05805	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS05810	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS05820	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CpPa04_RS05820	PWY-6164	3-dehydroquinate biosynthesis I
CpPa04_RS05820	PWY-6416	quinate degradation II
CpPa04_RS05820	PWY-6707	gallate biosynthesis
CpPa04_RS05935	PWY-6605	adenine and adenosine salvage II
CpPa04_RS05935	PWY-6610	adenine and adenosine salvage IV
CpPa04_RS05990	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CpPa04_RS06105	PWY-6891	thiazole biosynthesis II (Bacillus)
CpPa04_RS06105	PWY-6892	thiazole biosynthesis I (E. coli)
CpPa04_RS06105	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS06125	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS06125	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS06125	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS06125	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CpPa04_RS06195	PWY-3821	galactose degradation III
CpPa04_RS06195	PWY-6317	galactose degradation I (Leloir pathway)
CpPa04_RS06195	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CpPa04_RS06195	PWY-6527	stachyose degradation
CpPa04_RS06195	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CpPa04_RS06195	PWY-7344	UDP-D-galactose biosynthesis
CpPa04_RS06320	PWY-2941	L-lysine biosynthesis II
CpPa04_RS06320	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS06325	PWY-2781	<i>cis</i>-zeatin biosynthesis
CpPa04_RS06400	PWY-5269	cardiolipin biosynthesis II
CpPa04_RS06400	PWY-5668	cardiolipin biosynthesis I
CpPa04_RS06430	PWY-2941	L-lysine biosynthesis II
CpPa04_RS06430	PWY-2942	L-lysine biosynthesis III
CpPa04_RS06430	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS06435	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CpPa04_RS06435	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CpPa04_RS06435	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS06435	PWY-6936	seleno-amino acid biosynthesis
CpPa04_RS06435	PWY-702	L-methionine biosynthesis II
CpPa04_RS06440	PWY-2941	L-lysine biosynthesis II
CpPa04_RS06440	PWY-2942	L-lysine biosynthesis III
CpPa04_RS06440	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS06460	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CpPa04_RS06460	PWY-6167	flavin biosynthesis II (archaea)
CpPa04_RS06460	PWY-6168	flavin biosynthesis III (fungi)
CpPa04_RS06470	PWY-6012	acyl carrier protein metabolism I
CpPa04_RS06470	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CpPa04_RS06530	PWY-5194	siroheme biosynthesis
CpPa04_RS06530	PWY-5441	S-methyl-L-methionine cycle
CpPa04_RS06530	PWY-702	L-methionine biosynthesis II
CpPa04_RS06530	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CpPa04_RS06555	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CpPa04_RS06555	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CpPa04_RS06555	PWY-6268	adenosylcobalamin salvage from cobalamin
CpPa04_RS06555	PWY-6269	adenosylcobalamin salvage from cobinamide II
CpPa04_RS06570	PWY-7254	TCA cycle VII (acetate-producers)
CpPa04_RS06580	PWY-6421	arsenate detoxification III (mycothiol)
CpPa04_RS06615	PWY-7294	xylose degradation IV
CpPa04_RS06615	PWY-7295	L-arabinose degradation IV
CpPa04_RS06615	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS06640	PWY-5667	CDP-diacylglycerol biosynthesis I
CpPa04_RS06640	PWY-5981	CDP-diacylglycerol biosynthesis III
CpPa04_RS06725	PWY-6829	tRNA methylation (yeast)
CpPa04_RS06725	PWY-7285	methylwyosine biosynthesis
CpPa04_RS06725	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CpPa04_RS06845	PWY-5941	glycogen degradation II (eukaryotic)
CpPa04_RS06845	PWY-6731	starch degradation III
CpPa04_RS06845	PWY-6737	starch degradation V
CpPa04_RS06845	PWY-7238	sucrose biosynthesis II
CpPa04_RS06855	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS06855	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CpPa04_RS06855	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS06855	PWY-5723	Rubisco shunt
CpPa04_RS06855	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS06855	PWY-6886	1-butanol autotrophic biosynthesis
CpPa04_RS06855	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS06855	PWY-7003	glycerol degradation to butanol
CpPa04_RS06855	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CpPa04_RS06855	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CpPa04_RS07075	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS07075	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS07080	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CpPa04_RS07080	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CpPa04_RS07080	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CpPa04_RS07080	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CpPa04_RS07090	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS07090	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS07095	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CpPa04_RS07095	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CpPa04_RS07095	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CpPa04_RS07100	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS07100	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS07120	PWY-2201	folate transformations I
CpPa04_RS07150	PWY-2201	folate transformations I
CpPa04_RS07150	PWY-3841	folate transformations II
CpPa04_RS07175	PWY-6164	3-dehydroquinate biosynthesis I
CpPa04_RS07235	PWY-3781	aerobic respiration I (cytochrome c)
CpPa04_RS07235	PWY-4521	arsenite oxidation I (respiratory)
CpPa04_RS07235	PWY-6692	Fe(II) oxidation
CpPa04_RS07235	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CpPa04_RS07260	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CpPa04_RS07260	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CpPa04_RS07260	PWY-6269	adenosylcobalamin salvage from cobinamide II
CpPa04_RS07265	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CpPa04_RS07265	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CpPa04_RS07265	PWY-6269	adenosylcobalamin salvage from cobinamide II
CpPa04_RS07270	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CpPa04_RS07270	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CpPa04_RS07270	PWY-6269	adenosylcobalamin salvage from cobinamide II
CpPa04_RS07275	PWY-5057	L-valine degradation II
CpPa04_RS07275	PWY-5076	L-leucine degradation III
CpPa04_RS07275	PWY-5078	L-isoleucine degradation II
CpPa04_RS07275	PWY-5101	L-isoleucine biosynthesis II
CpPa04_RS07275	PWY-5103	L-isoleucine biosynthesis III
CpPa04_RS07275	PWY-5104	L-isoleucine biosynthesis IV
CpPa04_RS07275	PWY-5108	L-isoleucine biosynthesis V
CpPa04_RS07305	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CpPa04_RS07305	PWY-5491	diethylphosphate degradation
CpPa04_RS07315	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CpPa04_RS07315	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CpPa04_RS07320	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CpPa04_RS07320	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CpPa04_RS07335	PWY-381	nitrate reduction II (assimilatory)
CpPa04_RS07335	PWY-5675	nitrate reduction V (assimilatory)
CpPa04_RS07335	PWY-6549	L-glutamine biosynthesis III
CpPa04_RS07335	PWY-6963	ammonia assimilation cycle I
CpPa04_RS07335	PWY-6964	ammonia assimilation cycle II
CpPa04_RS07470	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CpPa04_RS07470	PWY-6596	adenosine nucleotides degradation I
CpPa04_RS07470	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS07515	PWY-381	nitrate reduction II (assimilatory)
CpPa04_RS07515	PWY-5675	nitrate reduction V (assimilatory)
CpPa04_RS07515	PWY-6549	L-glutamine biosynthesis III
CpPa04_RS07515	PWY-6963	ammonia assimilation cycle I
CpPa04_RS07515	PWY-6964	ammonia assimilation cycle II
CpPa04_RS07535	PWY-3821	galactose degradation III
CpPa04_RS07535	PWY-6317	galactose degradation I (Leloir pathway)
CpPa04_RS07535	PWY-6527	stachyose degradation
CpPa04_RS07600	PWY-6891	thiazole biosynthesis II (Bacillus)
CpPa04_RS07600	PWY-6892	thiazole biosynthesis I (E. coli)
CpPa04_RS07600	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS07660	PWY-6749	CMP-legionaminate biosynthesis I
CpPa04_RS07740	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CpPa04_RS07740	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CpPa04_RS07760	PWY-2201	folate transformations I
CpPa04_RS07790	PWY-5941	glycogen degradation II (eukaryotic)
CpPa04_RS07790	PWY-6724	starch degradation II
CpPa04_RS07790	PWY-6737	starch degradation V
CpPa04_RS07790	PWY-7238	sucrose biosynthesis II
CpPa04_RS07810	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CpPa04_RS07810	PWY-6174	mevalonate pathway II (archaea)
CpPa04_RS07810	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
CpPa04_RS07810	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CpPa04_RS07810	PWY-7102	bisabolene biosynthesis
CpPa04_RS07810	PWY-7391	isoprene biosynthesis II (engineered)
CpPa04_RS07810	PWY-7524	mevalonate pathway III (archaea)
CpPa04_RS07810	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS07810	PWY-922	mevalonate pathway I
CpPa04_RS07890	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CpPa04_RS07995	PWY-5381	pyridine nucleotide cycling (plants)
CpPa04_RS07995	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CpPa04_RS08000	PWY-3341	L-proline biosynthesis III
CpPa04_RS08000	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CpPa04_RS08020	PWY-3341	L-proline biosynthesis III
CpPa04_RS08020	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CpPa04_RS08050	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS08050	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CpPa04_RS08050	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08050	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08050	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CpPa04_RS08050	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CpPa04_RS08050	PWY-7205	CMP phosphorylation
CpPa04_RS08050	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CpPa04_RS08050	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08050	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS08050	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08050	PWY-7224	purine deoxyribonucleosides salvage
CpPa04_RS08050	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08050	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS08065	PWY-2161	folate polyglutamylation
CpPa04_RS08075	PWY-1622	formaldehyde assimilation I (serine pathway)
CpPa04_RS08075	PWY-5392	reductive TCA cycle II
CpPa04_RS08075	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CpPa04_RS08075	PWY-5690	TCA cycle II (plants and fungi)
CpPa04_RS08075	PWY-5913	TCA cycle VI (obligate autotrophs)
CpPa04_RS08075	PWY-6728	methylaspartate cycle
CpPa04_RS08075	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CpPa04_RS08075	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CpPa04_RS08075	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CpPa04_RS08090	PWY-5958	acridone alkaloid biosynthesis
CpPa04_RS08090	PWY-6543	4-aminobenzoate biosynthesis
CpPa04_RS08090	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CpPa04_RS08090	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CpPa04_RS08145	PWY-4061	glutathione-mediated detoxification I
CpPa04_RS08145	PWY-6842	glutathione-mediated detoxification II
CpPa04_RS08145	PWY-7112	4-hydroxy-2-nonenal detoxification
CpPa04_RS08325	PWY-6012	acyl carrier protein metabolism I
CpPa04_RS08325	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CpPa04_RS08330	PWY-4381	fatty acid biosynthesis initiation I
CpPa04_RS08330	PWY-5142	acyl-ACP thioesterase pathway
CpPa04_RS08330	PWY-5147	oleate biosynthesis I (plants)
CpPa04_RS08330	PWY-5366	palmitoleate biosynthesis II (plants and bacteria)
CpPa04_RS08330	PWY-5367	petroselinate biosynthesis
CpPa04_RS08330	PWY-5966	fatty acid biosynthesis initiation II
CpPa04_RS08330	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CpPa04_RS08330	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CpPa04_RS08330	PWY-5989	stearate biosynthesis II (bacteria and plants)
CpPa04_RS08330	PWY-5994	palmitate biosynthesis I (animals and fungi)
CpPa04_RS08330	PWY-6113	superpathway of mycolate biosynthesis
CpPa04_RS08330	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CpPa04_RS08330	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CpPa04_RS08330	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CpPa04_RS08330	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CpPa04_RS08330	PWY-7663	gondoate biosynthesis (anaerobic)
CpPa04_RS08330	PWY-7664	oleate biosynthesis IV (anaerobic)
CpPa04_RS08330	PWY-7723	CpPa04_RS08330
CpPa04_RS08330	PWYG-321	mycolate biosynthesis
CpPa04_RS08385	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CpPa04_RS08400	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS08400	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS08420	PWY-5381	pyridine nucleotide cycling (plants)
CpPa04_RS08455	PWY-3781	aerobic respiration I (cytochrome c)
CpPa04_RS08455	PWY-4521	arsenite oxidation I (respiratory)
CpPa04_RS08455	PWY-6692	Fe(II) oxidation
CpPa04_RS08455	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CpPa04_RS08465	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS08465	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08465	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CpPa04_RS08465	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CpPa04_RS08465	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08465	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08465	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08465	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS08475	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS08475	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08475	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CpPa04_RS08475	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CpPa04_RS08475	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08475	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08475	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08475	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS08565	PWY-2723	trehalose degradation V
CpPa04_RS08565	PWY-3801	sucrose degradation II (sucrose synthase)
CpPa04_RS08565	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CpPa04_RS08565	PWY-5661	GDP-glucose biosynthesis
CpPa04_RS08565	PWY-5940	streptomycin biosynthesis
CpPa04_RS08565	PWY-5941	glycogen degradation II (eukaryotic)
CpPa04_RS08565	PWY-622	starch biosynthesis
CpPa04_RS08565	PWY-6731	starch degradation III
CpPa04_RS08565	PWY-6737	starch degradation V
CpPa04_RS08565	PWY-6749	CMP-legionaminate biosynthesis I
CpPa04_RS08565	PWY-7238	sucrose biosynthesis II
CpPa04_RS08565	PWY-7343	UDP-glucose biosynthesis
CpPa04_RS08610	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CpPa04_RS08610	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CpPa04_RS08615	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CpPa04_RS08615	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CpPa04_RS08615	PWY-6268	adenosylcobalamin salvage from cobalamin
CpPa04_RS08615	PWY-6269	adenosylcobalamin salvage from cobinamide II
CpPa04_RS08630	PWY-6936	seleno-amino acid biosynthesis
CpPa04_RS08635	PWY-6936	seleno-amino acid biosynthesis
CpPa04_RS08635	PWY-7274	D-cycloserine biosynthesis
CpPa04_RS08770	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS08770	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CpPa04_RS08770	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CpPa04_RS08775	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS08775	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CpPa04_RS08775	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CpPa04_RS08775	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CpPa04_RS08790	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CpPa04_RS08790	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08790	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CpPa04_RS08790	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CpPa04_RS08790	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08790	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS08790	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CpPa04_RS08790	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS08800	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS08800	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CpPa04_RS08800	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CpPa04_RS08805	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS08805	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CpPa04_RS08805	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CpPa04_RS08810	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS08810	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CpPa04_RS08810	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CpPa04_RS08830	PWY-6123	inosine-5'-phosphate biosynthesis I
CpPa04_RS08830	PWY-6124	inosine-5'-phosphate biosynthesis II
CpPa04_RS08830	PWY-7234	inosine-5'-phosphate biosynthesis III
CpPa04_RS08835	PWY-6123	inosine-5'-phosphate biosynthesis I
CpPa04_RS08835	PWY-6124	inosine-5'-phosphate biosynthesis II
CpPa04_RS08835	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS08835	PWY-7234	inosine-5'-phosphate biosynthesis III
CpPa04_RS08850	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CpPa04_RS08850	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CpPa04_RS08850	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CpPa04_RS08965	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS08970	PWY-7560	methylerythritol phosphate pathway II
CpPa04_RS09005	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CpPa04_RS09005	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS09005	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CpPa04_RS09005	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CpPa04_RS09085	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CpPa04_RS09085	PWY-7494	choline degradation IV
CpPa04_RS09110	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CpPa04_RS09110	PWY-6148	tetrahydromethanopterin biosynthesis
CpPa04_RS09110	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CpPa04_RS09110	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CpPa04_RS09115	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CpPa04_RS09115	PWY-6148	tetrahydromethanopterin biosynthesis
CpPa04_RS09115	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CpPa04_RS09115	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CpPa04_RS09120	PWY-6614	tetrahydrofolate biosynthesis
CpPa04_RS09125	PWY-5663	tetrahydrobiopterin biosynthesis I
CpPa04_RS09125	PWY-5664	tetrahydrobiopterin biosynthesis II
CpPa04_RS09125	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CpPa04_RS09125	PWY-6703	preQ<sub>0</sub> biosynthesis
CpPa04_RS09125	PWY-6983	tetrahydrobiopterin biosynthesis III
CpPa04_RS09125	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CpPa04_RS09135	PWY-6599	guanine and guanosine salvage II
CpPa04_RS09135	PWY-6609	adenine and adenosine salvage III
CpPa04_RS09135	PWY-6610	adenine and adenosine salvage IV
CpPa04_RS09135	PWY-6620	guanine and guanosine salvage
CpPa04_RS09145	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CpPa04_RS09145	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CpPa04_RS09265	PWY-6840	homoglutathione biosynthesis
CpPa04_RS09265	PWY-7255	ergothioneine biosynthesis I (bacteria)
CpPa04_RS09330	PWY-5482	pyruvate fermentation to acetate II
CpPa04_RS09330	PWY-5485	pyruvate fermentation to acetate IV
CpPa04_RS09330	PWY-5497	purine nucleobases degradation II (anaerobic)
CpPa04_RS09335	PWY-1281	sulfoacetaldehyde degradation I
CpPa04_RS09335	PWY-5482	pyruvate fermentation to acetate II
CpPa04_RS09335	PWY-5485	pyruvate fermentation to acetate IV
CpPa04_RS09335	PWY-5497	purine nucleobases degradation II (anaerobic)
CpPa04_RS09335	PWY-6637	sulfolactate degradation II
CpPa04_RS09405	PWY-5674	nitrate reduction IV (dissimilatory)
CpPa04_RS09415	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CpPa04_RS09470	PWY-1042	glycolysis IV (plant cytosol)
CpPa04_RS09470	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CpPa04_RS09470	PWY-5484	glycolysis II (from fructose 6-phosphate)
CpPa04_RS09470	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CpPa04_RS09470	PWY-7385	1,3-propanediol biosynthesis (engineered)
CpPa04_RS09485	PWY-5686	UMP biosynthesis
CpPa04_RS09760	PWY-5704	urea degradation II
CpPa04_RS09765	PWY-5704	urea degradation II
CpPa04_RS09770	PWY-5704	urea degradation II
CpPa04_RS09810	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CpPa04_RS09815	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CpPa04_RS09845	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CpPa04_RS09875	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CpPa04_RS09915	PWY-4381	fatty acid biosynthesis initiation I
CpPa04_RS09915	PWY-5743	3-hydroxypropanoate cycle
CpPa04_RS09915	PWY-5744	glyoxylate assimilation
CpPa04_RS09915	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CpPa04_RS09915	PWY-6679	jadomycin biosynthesis
CpPa04_RS09915	PWY-6722	candicidin biosynthesis
CpPa04_RS09915	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CpPa04_RS09995	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CpPa04_RS09995	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CpPa04_RS09995	PWY-7622	UDP-galactofuranose biosynthesis
CpPa04_RS10025	PWY-5667	CDP-diacylglycerol biosynthesis I
CpPa04_RS10025	PWY-5981	CDP-diacylglycerol biosynthesis III
CpPa04_RS10025	PWY-6453	stigma estolide biosynthesis
CpPa04_RS10025	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CpPa04_RS10025	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CpPa04_RS10025	PWY-7587	oleate biosynthesis III (cyanobacteria)
CpPa04_RS10025	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
CpPa04_RS10030	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CpPa04_RS10060	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CpPa04_RS10105	PWY-6556	pyrimidine ribonucleosides salvage II
CpPa04_RS10105	PWY-7181	pyrimidine deoxyribonucleosides degradation
CpPa04_RS10105	PWY-7193	pyrimidine ribonucleosides salvage I
CpPa04_RS10105	PWY-7199	pyrimidine deoxyribonucleosides salvage
CpPa04_RS10110	PWY-7181	pyrimidine deoxyribonucleosides degradation
CpPa04_RS10115	PWY-5481	pyruvate fermentation to lactate
CpPa04_RS10115	PWY-6901	superpathway of glucose and xylose degradation
CpPa04_RS10125	PWY-6854	ethylene biosynthesis III (microbes)
CpPa04_RS10395	PWY-6938	NADH repair
CpPa04_RS10450	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CpPa04_RS10450	PWY-6855	chitin degradation I (archaea)
CpPa04_RS10450	PWY-6906	chitin derivatives degradation
CpPa04_RS10455	PWY-6906	chitin derivatives degradation
CpPa04_RS10455	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CpPa04_RS10455	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CpPa04_RS10495	PWY-2941	L-lysine biosynthesis II
CpPa04_RS10495	PWY-2942	L-lysine biosynthesis III
CpPa04_RS10495	PWY-5097	L-lysine biosynthesis VI
CpPa04_RS10570	PWY-5958	acridone alkaloid biosynthesis
CpPa04_RS10570	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CpPa04_RS10570	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CpPa04_RS10575	PWY-5958	acridone alkaloid biosynthesis
CpPa04_RS10575	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CpPa04_RS10575	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
