CpPa04_RS00005 PF00308 Bacterial dnaA protein CpPa04_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CpPa04_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CpPa04_RS00010 PF02767 DNA polymerase III beta subunit, central domain CpPa04_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CpPa04_RS00015 PF02463 RecF/RecN/SMC N terminal domain CpPa04_RS00020 PF05258 CpPa04_RS00020 CpPa04_RS00025 PF00204 DNA gyrase B CpPa04_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus CpPa04_RS00025 PF01751 Toprim domain CpPa04_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpPa04_RS00045 PF00521 DNA gyrase/topoisomerase IV, subunit A CpPa04_RS00045 PF03989 DNA gyrase C-terminal domain, beta-propeller CpPa04_RS00050 PF12089 CpPa04_RS00050 CpPa04_RS00065 PF14256 CpPa04_RS00065 CpPa04_RS00085 PF13407 Periplasmic binding protein domain CpPa04_RS00090 PF02653 CpPa04_RS00090 CpPa04_RS00095 PF00005 ABC transporter CpPa04_RS00105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CpPa04_RS00110 PF01694 Rhomboid family CpPa04_RS00120 PF09704 CRISPR-associated protein (Cas_Cas5) CpPa04_RS00135 PF00005 ABC transporter CpPa04_RS00140 PF01032 FecCD transport family CpPa04_RS00145 PF01032 FecCD transport family CpPa04_RS00150 PF01497 Periplasmic binding protein CpPa04_RS00155 PF06781 CpPa04_RS00155 CpPa04_RS00160 PF00069 Protein kinase domain CpPa04_RS00160 PF03793 PASTA domain CpPa04_RS00165 PF00069 Protein kinase domain CpPa04_RS00170 PF00905 Penicillin binding protein transpeptidase domain CpPa04_RS00175 PF01098 CpPa04_RS00175 CpPa04_RS00180 PF13672 Protein phosphatase 2C CpPa04_RS00185 PF00498 FHA domain CpPa04_RS00190 PF00498 FHA domain CpPa04_RS00190 PF12401 Protein of unknown function (DUF2662) CpPa04_RS00200 PF02517 CAAX protease self-immunity CpPa04_RS00205 PF11193 CpPa04_RS00205 CpPa04_RS00210 PF03551 Transcriptional regulator PadR-like family CpPa04_RS00215 PF01497 Periplasmic binding protein CpPa04_RS00220 PF00005 ABC transporter CpPa04_RS00225 PF01032 FecCD transport family CpPa04_RS00230 PF01769 Divalent cation transporter CpPa04_RS00230 PF03448 MgtE intracellular N domain CpPa04_RS00235 PF00128 Alpha amylase, catalytic domain CpPa04_RS00235 PF11941 Domain of unknown function (DUF3459) CpPa04_RS00245 PF07690 Major Facilitator Superfamily CpPa04_RS00255 PF10099 CpPa04_RS00255 CpPa04_RS00260 PF04542 Sigma-70 region 2 CpPa04_RS00260 PF08281 Sigma-70, region 4 CpPa04_RS00270 PF00578 AhpC/TSA family CpPa04_RS00270 PF02683 CpPa04_RS00270 CpPa04_RS00280 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS00285 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS00290 PF00005 ABC transporter CpPa04_RS00295 PF14013 CpPa04_RS00295 CpPa04_RS00300 PF01546 Peptidase family M20/M25/M40 CpPa04_RS00300 PF07687 Peptidase dimerisation domain CpPa04_RS00305 PF04055 Radical SAM superfamily CpPa04_RS00305 PF06968 Biotin and Thiamin Synthesis associated domain CpPa04_RS00315 PF08877 MepB protein CpPa04_RS00320 PF01048 Phosphorylase superfamily CpPa04_RS00320 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CpPa04_RS00330 PF01183 Glycosyl hydrolases family 25 CpPa04_RS00340 PF01988 CpPa04_RS00340 CpPa04_RS00345 PF01674 Lipase (class 2) CpPa04_RS00350 PF00881 Nitroreductase family CpPa04_RS00355 PF00132 Bacterial transferase hexapeptide (six repeats) CpPa04_RS00360 PF00480 ROK family CpPa04_RS00365 PF03929 CpPa04_RS00365 CpPa04_RS00375 PF05960 Bacterial protein of unknown function (DUF885) CpPa04_RS00380 PF01047 MarR family CpPa04_RS00395 PF05145 CpPa04_RS00395 CpPa04_RS00405 PF01925 CpPa04_RS00405 CpPa04_RS00410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CpPa04_RS00410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CpPa04_RS00415 PF03611 CpPa04_RS00415 CpPa04_RS00420 PF00270 DEAD/DEAH box helicase CpPa04_RS00420 PF00271 Helicase conserved C-terminal domain CpPa04_RS00420 PF04408 Helicase associated domain (HA2) CpPa04_RS00420 PF08482 CpPa04_RS00420 CpPa04_RS00425 PF13532 2OG-Fe(II) oxygenase superfamily CpPa04_RS00430 PF03352 Methyladenine glycosylase CpPa04_RS00435 PF00106 short chain dehydrogenase CpPa04_RS00440 PF01906 Putative heavy-metal-binding CpPa04_RS00445 PF13275 S4 domain CpPa04_RS00455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CpPa04_RS00465 PF01844 HNH endonuclease CpPa04_RS00465 PF02720 CpPa04_RS00465 CpPa04_RS00470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CpPa04_RS00470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CpPa04_RS00475 PF00230 Major intrinsic protein CpPa04_RS00480 PF07859 alpha/beta hydrolase fold CpPa04_RS00485 PF01431 Peptidase family M13 CpPa04_RS00485 PF05649 Peptidase family M13 CpPa04_RS00495 PF13367 CpPa04_RS00495 CpPa04_RS00500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CpPa04_RS00505 PF04602 Mycobacterial cell wall arabinan synthesis protein CpPa04_RS00505 PF14896 EmbC C-terminal domain CpPa04_RS00510 PF12249 CpPa04_RS00510 CpPa04_RS00510 PF12250 CpPa04_RS00510 CpPa04_RS00515 PF00106 short chain dehydrogenase CpPa04_RS00520 PF01565 FAD binding domain CpPa04_RS00520 PF04030 D-arabinono-1,4-lactone oxidase CpPa04_RS00545 PF04138 CpPa04_RS00545 CpPa04_RS00550 PF00535 Glycosyl transferase family 2 CpPa04_RS00560 PF00005 ABC transporter CpPa04_RS00570 PF00950 CpPa04_RS00570 CpPa04_RS00575 PF01297 Periplasmic solute binding protein family CpPa04_RS00580 PF01569 PAP2 superfamily CpPa04_RS00585 PF00005 ABC transporter CpPa04_RS00590 PF01061 CpPa04_RS00590 CpPa04_RS00595 PF00266 Aminotransferase class-V CpPa04_RS00600 PF00107 Zinc-binding dehydrogenase CpPa04_RS00600 PF08240 Alcohol dehydrogenase GroES-like domain CpPa04_RS00610 PF00155 Aminotransferase class I and II CpPa04_RS00625 PF00939 Sodium:sulfate symporter transmembrane region CpPa04_RS00635 PF00874 PRD domain CpPa04_RS00635 PF03123 CAT RNA binding domain CpPa04_RS00640 PF00367 phosphotransferase system, EIIB CpPa04_RS00640 PF02378 Phosphotransferase system, EIIC CpPa04_RS00645 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CpPa04_RS00650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CpPa04_RS00655 PF00115 Cytochrome C and Quinol oxidase polypeptide I CpPa04_RS00670 PF00392 Bacterial regulatory proteins, gntR family CpPa04_RS00675 PF01680 SOR/SNZ family CpPa04_RS00680 PF01174 SNO glutamine amidotransferase family CpPa04_RS00685 PF02153 Prephenate dehydrogenase CpPa04_RS00695 PF14437 CpPa04_RS00695 CpPa04_RS00705 PF03176 MMPL family CpPa04_RS00710 PF01702 Queuine tRNA-ribosyltransferase CpPa04_RS00715 PF00749 tRNA synthetases class I (E and Q), catalytic domain CpPa04_RS00720 PF02447 CpPa04_RS00720 CpPa04_RS00725 PF01202 Shikimate kinase CpPa04_RS00730 PF00107 Zinc-binding dehydrogenase CpPa04_RS00730 PF08240 Alcohol dehydrogenase GroES-like domain CpPa04_RS00735 PF13561 Enoyl-(Acyl carrier protein) reductase CpPa04_RS00750 PF12897 Alanine-glyoxylate amino-transferase CpPa04_RS00755 PF05076 Suppressor of fused protein (SUFU) CpPa04_RS00760 PF12169 DNA polymerase III subunits gamma and tau domain III CpPa04_RS00760 PF13177 DNA polymerase III, delta subunit CpPa04_RS00765 PF02575 YbaB/EbfC DNA-binding family CpPa04_RS00770 PF02132 RecR protein CpPa04_RS00770 PF13662 Toprim domain CpPa04_RS00775 PF02447 CpPa04_RS00775 CpPa04_RS00780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CpPa04_RS00780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CpPa04_RS00790 PF00392 Bacterial regulatory proteins, gntR family CpPa04_RS00790 PF07729 FCD domain CpPa04_RS00795 PF01557 Fumarylacetoacetate (FAA) hydrolase family CpPa04_RS00805 PF07685 CobB/CobQ-like glutamine amidotransferase domain CpPa04_RS00810 PF08245 Mur ligase middle domain CpPa04_RS00810 PF08353 CpPa04_RS00810 CpPa04_RS00820 PF00881 Nitroreductase family CpPa04_RS00825 PF00682 HMGL-like CpPa04_RS00825 PF08502 LeuA allosteric (dimerisation) domain CpPa04_RS00830 PF04198 Putative sugar-binding domain CpPa04_RS00835 PF01048 Phosphorylase superfamily CpPa04_RS00840 PF07690 Major Facilitator Superfamily CpPa04_RS00845 PF01791 DeoC/LacD family aldolase CpPa04_RS00850 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpPa04_RS00850 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpPa04_RS00850 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpPa04_RS00850 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpPa04_RS00860 PF08341 Fibronectin-binding protein signal sequence CpPa04_RS00865 PF05738 Cna protein B-type domain CpPa04_RS00880 PF00696 Amino acid kinase family CpPa04_RS00880 PF01842 ACT domain CpPa04_RS00880 PF13840 ACT domain CpPa04_RS00890 PF01118 Semialdehyde dehydrogenase, NAD binding domain CpPa04_RS00890 PF02774 Semialdehyde dehydrogenase, dimerisation domain CpPa04_RS00895 PF04542 Sigma-70 region 2 CpPa04_RS00895 PF08281 Sigma-70, region 4 CpPa04_RS00900 PF00199 Catalase CpPa04_RS00900 PF06628 Catalase-related immune-responsive CpPa04_RS00930 PF00005 ABC transporter CpPa04_RS00930 PF08402 TOBE domain CpPa04_RS00935 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS00940 PF13343 Bacterial extracellular solute-binding protein CpPa04_RS00950 PF00072 Response regulator receiver domain CpPa04_RS00950 PF00486 Transcriptional regulatory protein, C terminal CpPa04_RS00960 PF03334 CpPa04_RS00960 CpPa04_RS00970 PF01899 CpPa04_RS00970 CpPa04_RS00975 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CpPa04_RS00980 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CpPa04_RS00985 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CpPa04_RS00985 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CpPa04_RS00985 PF04039 CpPa04_RS00985 CpPa04_RS00985 PF13244 CpPa04_RS00985 CpPa04_RS00995 PF13810 CpPa04_RS00995 CpPa04_RS01000 PF12698 ABC-2 family transporter protein CpPa04_RS01005 PF00005 ABC transporter CpPa04_RS01025 PF12850 Calcineurin-like phosphoesterase superfamily domain CpPa04_RS01030 PF09424 Yqey-like protein CpPa04_RS01040 PF02467 CpPa04_RS01040 CpPa04_RS01045 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease CpPa04_RS01050 PF00753 Metallo-beta-lactamase superfamily CpPa04_RS01055 PF00027 Cyclic nucleotide-binding domain CpPa04_RS01055 PF13545 Crp-like helix-turn-helix domain CpPa04_RS01065 PF00633 Helix-hairpin-helix motif CpPa04_RS01065 PF00730 HhH-GPD superfamily base excision DNA repair protein CpPa04_RS01070 PF08534 Redoxin CpPa04_RS01075 PF00293 NUDIX domain CpPa04_RS01080 PF02674 CpPa04_RS01080 CpPa04_RS01080 PF13365 Trypsin-like peptidase domain CpPa04_RS01085 PF00561 alpha/beta hydrolase fold CpPa04_RS01090 PF07332 CpPa04_RS01090 CpPa04_RS01100 PF12710 haloacid dehalogenase-like hydrolase CpPa04_RS01115 PF00437 Type II/IV secretion system protein CpPa04_RS01120 PF00482 Type II secretion system (T2SS), protein F CpPa04_RS01125 PF00482 Type II secretion system (T2SS), protein F CpPa04_RS01130 PF14029 CpPa04_RS01130 CpPa04_RS01140 PF13400 CpPa04_RS01140 CpPa04_RS01145 PF00270 DEAD/DEAH box helicase CpPa04_RS01145 PF00271 Helicase conserved C-terminal domain CpPa04_RS01145 PF09369 CpPa04_RS01145 CpPa04_RS01150 PF00313 'Cold-shock' DNA-binding domain CpPa04_RS01155 PF01131 DNA topoisomerase CpPa04_RS01155 PF01751 Toprim domain CpPa04_RS01155 PF13368 CpPa04_RS01155 CpPa04_RS01160 PF03169 CpPa04_RS01160 CpPa04_RS01165 PF00211 Adenylate and Guanylate cyclase catalytic domain CpPa04_RS01165 PF00672 HAMP domain CpPa04_RS01170 PF13177 DNA polymerase III, delta subunit CpPa04_RS01185 PF00501 AMP-binding enzyme CpPa04_RS01185 PF13193 AMP-binding enzyme C-terminal domain CpPa04_RS01190 PF13472 GDSL-like Lipase/Acylhydrolase family CpPa04_RS01195 PF00483 Nucleotidyl transferase CpPa04_RS01200 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CpPa04_RS01200 PF04321 RmlD substrate binding domain CpPa04_RS01205 PF16363 CpPa04_RS01205 CpPa04_RS01210 PF01433 Peptidase family M1 CpPa04_RS01215 PF00326 Prolyl oligopeptidase family CpPa04_RS01215 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CpPa04_RS01220 PF00756 Putative esterase CpPa04_RS01230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CpPa04_RS01230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpPa04_RS01235 PF06114 Domain of unknown function (DUF955) CpPa04_RS01235 PF09856 CpPa04_RS01235 CpPa04_RS01235 PF13560 Helix-turn-helix domain CpPa04_RS01240 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CpPa04_RS01245 PF00890 FAD binding domain CpPa04_RS01245 PF02910 Fumarate reductase flavoprotein C-term CpPa04_RS01250 PF12838 4Fe-4S dicluster domain CpPa04_RS01250 PF13085 2Fe-2S iron-sulfur cluster binding domain CpPa04_RS01260 PF04286 CpPa04_RS01260 CpPa04_RS01265 PF10724 CpPa04_RS01265 CpPa04_RS01275 PF11209 CpPa04_RS01275 CpPa04_RS01280 PF04055 Radical SAM superfamily CpPa04_RS01280 PF13353 4Fe-4S single cluster domain CpPa04_RS01285 PF01228 Glycine radical CpPa04_RS01290 PF01228 Glycine radical CpPa04_RS01290 PF02901 Pyruvate formate lyase CpPa04_RS01300 PF10698 CpPa04_RS01300 CpPa04_RS01305 PF01565 FAD binding domain CpPa04_RS01305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CpPa04_RS01310 PF00501 AMP-binding enzyme CpPa04_RS01310 PF13193 AMP-binding enzyme C-terminal domain CpPa04_RS01315 PF00534 Glycosyl transferases group 1 CpPa04_RS01315 PF13439 Glycosyltransferase Family 4 CpPa04_RS01320 PF00300 Histidine phosphatase superfamily (branch 1) CpPa04_RS01325 PF00512 His Kinase A (phospho-acceptor) domain CpPa04_RS01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpPa04_RS01330 PF00072 Response regulator receiver domain CpPa04_RS01330 PF00486 Transcriptional regulatory protein, C terminal CpPa04_RS01340 PF02541 Ppx/GppA phosphatase family CpPa04_RS01350 PF03807 NADP oxidoreductase coenzyme F420-dependent CpPa04_RS01350 PF14748 Pyrroline-5-carboxylate reductase dimerisation CpPa04_RS01360 PF12728 Helix-turn-helix domain CpPa04_RS01365 PF08213 CpPa04_RS01365 CpPa04_RS01370 PF13462 Thioredoxin CpPa04_RS01375 PF02683 CpPa04_RS01375 CpPa04_RS01380 PF12710 haloacid dehalogenase-like hydrolase CpPa04_RS01385 PF05768 Glutaredoxin-like domain (DUF836) CpPa04_RS01390 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CpPa04_RS01390 PF01488 Shikimate / quinate 5-dehydrogenase CpPa04_RS01390 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CpPa04_RS01395 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CpPa04_RS01395 PF03900 Porphobilinogen deaminase, C-terminal domain CpPa04_RS01400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS01400 PF02602 Uroporphyrinogen-III synthase HemD CpPa04_RS01405 PF00490 Delta-aminolevulinic acid dehydratase CpPa04_RS01415 PF00122 E1-E2 ATPase CpPa04_RS01415 PF00702 haloacid dehalogenase-like hydrolase CpPa04_RS01420 PF01208 Uroporphyrinogen decarboxylase (URO-D) CpPa04_RS01425 PF01593 Flavin containing amine oxidoreductase CpPa04_RS01430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CpPa04_RS01430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CpPa04_RS01435 PF00202 Aminotransferase class-III CpPa04_RS01440 PF00300 Histidine phosphatase superfamily (branch 1) CpPa04_RS01445 PF00578 AhpC/TSA family CpPa04_RS01450 PF02683 CpPa04_RS01450 CpPa04_RS01455 PF05140 CpPa04_RS01455 CpPa04_RS01460 PF13649 Methyltransferase domain CpPa04_RS01465 PF00005 ABC transporter CpPa04_RS01470 PF01497 Periplasmic binding protein CpPa04_RS01475 PF01032 FecCD transport family CpPa04_RS01480 PF01578 CpPa04_RS01480 CpPa04_RS01490 PF14012 CpPa04_RS01490 CpPa04_RS01495 PF01040 UbiA prenyltransferase family CpPa04_RS01500 PF00501 AMP-binding enzyme CpPa04_RS01505 PF00378 Enoyl-CoA hydratase/isomerase family CpPa04_RS01515 PF13378 Enolase C-terminal domain-like CpPa04_RS01520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CpPa04_RS01520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CpPa04_RS01535 PF01209 ubiE/COQ5 methyltransferase family CpPa04_RS01540 PF00056 lactate/malate dehydrogenase, NAD binding domain CpPa04_RS01540 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CpPa04_RS01545 PF01494 FAD binding domain CpPa04_RS01550 PF00348 Polyprenyl synthetase CpPa04_RS01575 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CpPa04_RS01580 PF02357 Transcription termination factor nusG CpPa04_RS01585 PF00298 Ribosomal protein L11, RNA binding domain CpPa04_RS01585 PF03946 Ribosomal protein L11, N-terminal domain CpPa04_RS01590 PF00687 Ribosomal protein L1p/L10e family CpPa04_RS01605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CpPa04_RS01610 PF00466 Ribosomal protein L10 CpPa04_RS01615 PF00542 Ribosomal protein L7/L12 C-terminal domain CpPa04_RS01615 PF16320 CpPa04_RS01615 CpPa04_RS01625 PF01297 Periplasmic solute binding protein family CpPa04_RS01635 PF00005 ABC transporter CpPa04_RS01640 PF00950 CpPa04_RS01640 CpPa04_RS01650 PF11271 CpPa04_RS01650 CpPa04_RS01655 PF00562 RNA polymerase Rpb2, domain 6 CpPa04_RS01655 PF04560 RNA polymerase Rpb2, domain 7 CpPa04_RS01655 PF04561 RNA polymerase Rpb2, domain 2 CpPa04_RS01655 PF04563 RNA polymerase beta subunit CpPa04_RS01655 PF04565 RNA polymerase Rpb2, domain 3 CpPa04_RS01655 PF10385 RNA polymerase beta subunit external 1 domain CpPa04_RS01660 PF00623 RNA polymerase Rpb1, domain 2 CpPa04_RS01660 PF04983 RNA polymerase Rpb1, domain 3 CpPa04_RS01660 PF04997 RNA polymerase Rpb1, domain 1 CpPa04_RS01660 PF04998 RNA polymerase Rpb1, domain 5 CpPa04_RS01665 PF07730 Histidine kinase CpPa04_RS01670 PF00072 Response regulator receiver domain CpPa04_RS01670 PF00196 Bacterial regulatory proteins, luxR family CpPa04_RS01680 PF00005 ABC transporter CpPa04_RS01685 PF12679 CpPa04_RS01685 CpPa04_RS01695 PF03773 CpPa04_RS01695 CpPa04_RS01700 PF04055 Radical SAM superfamily CpPa04_RS01700 PF13353 4Fe-4S single cluster domain CpPa04_RS01705 PF13597 Anaerobic ribonucleoside-triphosphate reductase CpPa04_RS01715 PF00164 Ribosomal protein S12/S23 CpPa04_RS01720 PF00177 Ribosomal protein S7p/S5e CpPa04_RS01725 PF00009 Elongation factor Tu GTP binding domain CpPa04_RS01725 PF00679 Elongation factor G C-terminus CpPa04_RS01725 PF03144 Elongation factor Tu domain 2 CpPa04_RS01725 PF03764 Elongation factor G, domain IV CpPa04_RS01725 PF14492 Elongation Factor G, domain II CpPa04_RS01730 PF00009 Elongation factor Tu GTP binding domain CpPa04_RS01730 PF03143 Elongation factor Tu C-terminal domain CpPa04_RS01730 PF03144 Elongation factor Tu domain 2 CpPa04_RS01765 PF03780 CpPa04_RS01765 CpPa04_RS01775 PF00338 Ribosomal protein S10p/S20e CpPa04_RS01780 PF00297 Ribosomal protein L3 CpPa04_RS01785 PF00573 Ribosomal protein L4/L1 family CpPa04_RS01790 PF00276 Ribosomal protein L23 CpPa04_RS01795 PF00181 Ribosomal Proteins L2, RNA binding domain CpPa04_RS01795 PF03947 Ribosomal Proteins L2, C-terminal domain CpPa04_RS01800 PF00203 Ribosomal protein S19 CpPa04_RS01805 PF00237 Ribosomal protein L22p/L17e CpPa04_RS01810 PF00189 Ribosomal protein S3, C-terminal domain CpPa04_RS01810 PF07650 KH domain CpPa04_RS01815 PF00252 Ribosomal protein L16p/L10e CpPa04_RS01820 PF00831 Ribosomal L29 protein CpPa04_RS01825 PF00366 Ribosomal protein S17 CpPa04_RS01835 PF00005 ABC transporter CpPa04_RS01835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpPa04_RS01840 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS01840 PF12911 CpPa04_RS01840 CpPa04_RS01845 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS01850 PF00238 Ribosomal protein L14p/L23e CpPa04_RS01855 PF00467 KOW motif CpPa04_RS01855 PF17136 CpPa04_RS01855 CpPa04_RS01860 PF00281 Ribosomal protein L5 CpPa04_RS01860 PF00673 ribosomal L5P family C-terminus CpPa04_RS01870 PF03313 CpPa04_RS01870 CpPa04_RS01870 PF03315 Serine dehydratase beta chain CpPa04_RS01875 PF00710 Asparaginase CpPa04_RS01880 PF01569 PAP2 superfamily CpPa04_RS01885 PF00410 Ribosomal protein S8 CpPa04_RS01890 PF00347 Ribosomal protein L6 CpPa04_RS01895 PF00861 Ribosomal L18p/L5e family CpPa04_RS01900 PF00333 Ribosomal protein S5, N-terminal domain CpPa04_RS01900 PF03719 Ribosomal protein S5, C-terminal domain CpPa04_RS01905 PF00327 Ribosomal protein L30p/L7e CpPa04_RS01910 PF00828 Ribosomal protein L18e/L15 CpPa04_RS01925 PF13416 Bacterial extracellular solute-binding protein CpPa04_RS01930 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS01935 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS01940 PF05857 CpPa04_RS01940 CpPa04_RS01945 PF01226 Formate/nitrite transporter CpPa04_RS01950 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family CpPa04_RS01950 PF13224 CpPa04_RS01950 CpPa04_RS01955 PF00005 ABC transporter CpPa04_RS01960 PF00344 SecY translocase CpPa04_RS01965 PF00406 Adenylate kinase CpPa04_RS01975 PF13088 BNR repeat-like domain CpPa04_RS01980 PF03734 L,D-transpeptidase catalytic domain CpPa04_RS01990 PF01176 Translation initiation factor 1A / IF-1 CpPa04_RS01995 PF00416 Ribosomal protein S13/S18 CpPa04_RS02000 PF00411 Ribosomal protein S11 CpPa04_RS02005 PF00163 Ribosomal protein S4/S9 N-terminal domain CpPa04_RS02005 PF01479 S4 domain CpPa04_RS02010 PF01000 RNA polymerase Rpb3/RpoA insert domain CpPa04_RS02010 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CpPa04_RS02010 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CpPa04_RS02015 PF01196 Ribosomal protein L17 CpPa04_RS02020 PF01416 tRNA pseudouridine synthase CpPa04_RS02025 PF05108 Protein of unknown function (DUF690) CpPa04_RS02030 PF09656 CpPa04_RS02030 CpPa04_RS02035 PF00082 Subtilase family CpPa04_RS02055 PF06013 Proteins of 100 residues with WXG CpPa04_RS02060 PF06013 Proteins of 100 residues with WXG CpPa04_RS02065 PF00572 Ribosomal protein L13 CpPa04_RS02070 PF00380 Ribosomal protein S9/S16 CpPa04_RS02080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpPa04_RS02080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpPa04_RS02080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpPa04_RS02080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpPa04_RS02100 PF12740 Chlorophyllase enzyme CpPa04_RS02105 PF00842 Alanine racemase, C-terminal domain CpPa04_RS02105 PF01168 Alanine racemase, N-terminal domain CpPa04_RS02110 PF02367 Uncharacterised P-loop hydrolase UPF0079 CpPa04_RS02115 PF02080 TrkA-C domain CpPa04_RS02115 PF06826 CpPa04_RS02115 CpPa04_RS02125 PF00814 Glycoprotease family CpPa04_RS02130 PF00583 Acetyltransferase (GNAT) family CpPa04_RS02135 PF00814 Glycoprotease family CpPa04_RS02140 PF00166 Chaperonin 10 Kd subunit CpPa04_RS02145 PF00118 TCP-1/cpn60 chaperonin family CpPa04_RS02150 PF02467 CpPa04_RS02150 CpPa04_RS02155 PF04542 Sigma-70 region 2 CpPa04_RS02155 PF08281 Sigma-70, region 4 CpPa04_RS02170 PF00478 IMP dehydrogenase / GMP reductase domain CpPa04_RS02170 PF00571 CBS domain CpPa04_RS02175 PF00478 IMP dehydrogenase / GMP reductase domain CpPa04_RS02185 PF00117 Glutamine amidotransferase class-I CpPa04_RS02185 PF00958 GMP synthase C terminal domain CpPa04_RS02185 PF02540 NAD synthase CpPa04_RS02190 PF15583 CpPa04_RS02190 CpPa04_RS02195 PF04024 CpPa04_RS02195 CpPa04_RS02200 PF04024 CpPa04_RS02200 CpPa04_RS02205 PF00072 Response regulator receiver domain CpPa04_RS02205 PF00196 Bacterial regulatory proteins, luxR family CpPa04_RS02215 PF06999 CpPa04_RS02215 CpPa04_RS02220 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS02225 PF00005 ABC transporter CpPa04_RS02225 PF09383 NIL domain CpPa04_RS02230 PF03180 NLPA lipoprotein CpPa04_RS02235 PF03180 NLPA lipoprotein CpPa04_RS02255 PF01297 Periplasmic solute binding protein family CpPa04_RS02260 PF00005 ABC transporter CpPa04_RS02265 PF00950 CpPa04_RS02265 CpPa04_RS02270 PF00950 CpPa04_RS02270 CpPa04_RS02275 PF01325 Iron dependent repressor, N-terminal DNA binding domain CpPa04_RS02275 PF02742 Iron dependent repressor, metal binding and dimerisation domain CpPa04_RS02275 PF04023 FeoA domain CpPa04_RS02280 PF00588 SpoU rRNA Methylase family CpPa04_RS02285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CpPa04_RS02285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CpPa04_RS02290 PF11222 CpPa04_RS02290 CpPa04_RS02310 PF04213 CpPa04_RS02310 CpPa04_RS02315 PF01497 Periplasmic binding protein CpPa04_RS02320 PF01032 FecCD transport family CpPa04_RS02325 PF00005 ABC transporter CpPa04_RS02330 PF04213 CpPa04_RS02330 CpPa04_RS02340 PF03971 Monomeric isocitrate dehydrogenase CpPa04_RS02345 PF07690 Major Facilitator Superfamily CpPa04_RS02350 PF07739 TipAS antibiotic-recognition domain CpPa04_RS02350 PF13411 MerR HTH family regulatory protein CpPa04_RS02355 PF03372 Endonuclease/Exonuclease/phosphatase family CpPa04_RS02365 PF00579 tRNA synthetases class I (W and Y) CpPa04_RS02370 PF03631 CpPa04_RS02370 CpPa04_RS02375 PF00768 D-alanyl-D-alanine carboxypeptidase CpPa04_RS02390 PF00877 NlpC/P60 family CpPa04_RS02400 PF14681 Uracil phosphoribosyltransferase CpPa04_RS02405 PF01381 Helix-turn-helix CpPa04_RS02410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpPa04_RS02410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpPa04_RS02410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpPa04_RS02410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpPa04_RS02415 PF01546 Peptidase family M20/M25/M40 CpPa04_RS02415 PF07687 Peptidase dimerisation domain CpPa04_RS02420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CpPa04_RS02420 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpPa04_RS02425 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CpPa04_RS02425 PF00364 Biotin-requiring enzyme CpPa04_RS02425 PF00682 HMGL-like CpPa04_RS02425 PF02436 Conserved carboxylase domain CpPa04_RS02425 PF02785 Biotin carboxylase C-terminal domain CpPa04_RS02425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CpPa04_RS02430 PF07690 Major Facilitator Superfamily CpPa04_RS02440 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CpPa04_RS02440 PF00364 Biotin-requiring enzyme CpPa04_RS02440 PF02785 Biotin carboxylase C-terminal domain CpPa04_RS02440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CpPa04_RS02445 PF00581 Rhodanese-like domain CpPa04_RS02455 PF01757 CpPa04_RS02455 CpPa04_RS02460 PF11349 CpPa04_RS02460 CpPa04_RS02465 PF02545 Maf-like protein CpPa04_RS02470 PF00294 pfkB family carbohydrate kinase CpPa04_RS02475 PF00356 Bacterial regulatory proteins, lacI family CpPa04_RS02475 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CpPa04_RS02480 PF13822 CpPa04_RS02480 CpPa04_RS02485 PF01039 Carboxyl transferase domain CpPa04_RS02490 PF01039 Carboxyl transferase domain CpPa04_RS02495 PF03099 Biotin/lipoate A/B protein ligase family CpPa04_RS02505 PF02222 ATP-grasp domain CpPa04_RS02510 PF00731 AIR carboxylase CpPa04_RS02515 PF02698 DUF218 domain CpPa04_RS02525 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS02530 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS02535 PF13416 Bacterial extracellular solute-binding protein CpPa04_RS02545 PF03816 Cell envelope-related transcriptional attenuator domain CpPa04_RS02545 PF13399 LytR cell envelope-related transcriptional attenuator CpPa04_RS02550 PF00535 Glycosyl transferase family 2 CpPa04_RS02555 PF00132 Bacterial transferase hexapeptide (six repeats) CpPa04_RS02555 PF00483 Nucleotidyl transferase CpPa04_RS02565 PF02467 CpPa04_RS02565 CpPa04_RS02575 PF12005 CpPa04_RS02575 CpPa04_RS02580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpPa04_RS02580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpPa04_RS02580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpPa04_RS02580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpPa04_RS02590 PF01238 Phosphomannose isomerase type I CpPa04_RS02600 PF14078 CpPa04_RS02600 CpPa04_RS02605 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CpPa04_RS02605 PF05221 S-adenosyl-L-homocysteine hydrolase CpPa04_RS02610 PF02223 Thymidylate kinase CpPa04_RS02615 PF00072 Response regulator receiver domain CpPa04_RS02615 PF00486 Transcriptional regulatory protein, C terminal CpPa04_RS02620 PF00512 His Kinase A (phospho-acceptor) domain CpPa04_RS02620 PF00672 HAMP domain CpPa04_RS02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpPa04_RS02625 PF10647 CpPa04_RS02625 CpPa04_RS02635 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CpPa04_RS02635 PF16321 CpPa04_RS02635 CpPa04_RS02640 PF01043 SecA preprotein cross-linking domain CpPa04_RS02640 PF07516 SecA Wing and Scaffold domain CpPa04_RS02640 PF07517 SecA DEAD-like domain CpPa04_RS02650 PF00702 haloacid dehalogenase-like hydrolase CpPa04_RS02660 PF00111 2Fe-2S iron-sulfur cluster binding domain CpPa04_RS02660 PF00175 Oxidoreductase NAD-binding domain CpPa04_RS02660 PF00970 Oxidoreductase FAD-binding domain CpPa04_RS02665 PF00487 CpPa04_RS02665 CpPa04_RS02670 PF03193 Protein of unknown function, DUF258 CpPa04_RS02675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CpPa04_RS02680 PF02586 Uncharacterised ACR, COG2135 CpPa04_RS02685 PF04073 Aminoacyl-tRNA editing domain CpPa04_RS02690 PF04542 Sigma-70 region 2 CpPa04_RS02690 PF08281 Sigma-70, region 4 CpPa04_RS02695 PF13490 Putative zinc-finger CpPa04_RS02700 PF02467 CpPa04_RS02700 CpPa04_RS02710 PF13472 GDSL-like Lipase/Acylhydrolase family CpPa04_RS02720 PF00270 DEAD/DEAH box helicase CpPa04_RS02720 PF00271 Helicase conserved C-terminal domain CpPa04_RS02725 PF11305 CpPa04_RS02725 CpPa04_RS02730 PF11350 CpPa04_RS02730 CpPa04_RS02740 PF00580 UvrD/REP helicase N-terminal domain CpPa04_RS02740 PF12705 PD-(D/E)XK nuclease superfamily CpPa04_RS02740 PF13361 UvrD-like helicase C-terminal domain CpPa04_RS02745 PF00580 UvrD/REP helicase N-terminal domain CpPa04_RS02745 PF12705 PD-(D/E)XK nuclease superfamily CpPa04_RS02745 PF13361 UvrD-like helicase C-terminal domain CpPa04_RS02750 PF02254 TrkA-N domain CpPa04_RS02750 PF07885 Ion channel CpPa04_RS02755 PF00293 NUDIX domain CpPa04_RS02760 PF00570 HRDC domain CpPa04_RS02760 PF00580 UvrD/REP helicase N-terminal domain CpPa04_RS02760 PF13361 UvrD-like helicase C-terminal domain CpPa04_RS02770 PF01863 Protein of unknown function DUF45 CpPa04_RS02775 PF10103 Uncharacterised conserved protein (DUF2342) CpPa04_RS02780 PF05362 Lon protease (S16) C-terminal proteolytic domain CpPa04_RS02780 PF13180 PDZ domain CpPa04_RS02795 PF03699 CpPa04_RS02795 CpPa04_RS02805 PF08667 BetR domain CpPa04_RS02810 PF07751 CpPa04_RS02810 CpPa04_RS02830 PF10006 CpPa04_RS02830 CpPa04_RS02840 PF07732 Multicopper oxidase CpPa04_RS02840 PF13473 Cupredoxin-like domain CpPa04_RS02845 PF00089 Trypsin CpPa04_RS02855 PF07786 CpPa04_RS02855 CpPa04_RS02860 PF00132 Bacterial transferase hexapeptide (six repeats) CpPa04_RS02860 PF00501 AMP-binding enzyme CpPa04_RS02860 PF00550 Phosphopantetheine attachment site CpPa04_RS02875 PF00324 Amino acid permease CpPa04_RS02880 PF00682 HMGL-like CpPa04_RS02880 PF02436 Conserved carboxylase domain CpPa04_RS02885 PF01039 Carboxyl transferase domain CpPa04_RS02895 PF00364 Biotin-requiring enzyme CpPa04_RS02905 PF00459 Inositol monophosphatase family CpPa04_RS02910 PF00459 Inositol monophosphatase family CpPa04_RS02915 PF00472 RF-1 domain CpPa04_RS02915 PF03462 PCRF domain CpPa04_RS02925 PF03806 CpPa04_RS02925 CpPa04_RS02935 PF00005 ABC transporter CpPa04_RS02940 PF02687 CpPa04_RS02940 CpPa04_RS02945 PF01668 SmpB protein CpPa04_RS02955 PF00484 Carbonic anhydrase CpPa04_RS02965 PF01497 Periplasmic binding protein CpPa04_RS02970 PF01032 FecCD transport family CpPa04_RS02975 PF01032 FecCD transport family CpPa04_RS02980 PF00005 ABC transporter CpPa04_RS03005 PF00155 Aminotransferase class I and II CpPa04_RS03010 PF11580 Protein of unknown function (DUF3239) CpPa04_RS03015 PF04851 Type III restriction enzyme, res subunit CpPa04_RS03015 PF13625 CpPa04_RS03015 CpPa04_RS03015 PF16203 CpPa04_RS03015 CpPa04_RS03020 PF13625 CpPa04_RS03020 CpPa04_RS03030 PF06737 Transglycosylase-like domain CpPa04_RS03030 PF11574 Protein of unknown function (DUF3235) CpPa04_RS03035 PF00313 'Cold-shock' DNA-binding domain CpPa04_RS03040 PF10969 CpPa04_RS03040 CpPa04_RS03045 PF05096 Glutamine cyclotransferase CpPa04_RS03050 PF11228 CpPa04_RS03050 CpPa04_RS03055 PF00860 Permease family CpPa04_RS03060 PF00588 SpoU rRNA Methylase family CpPa04_RS03070 PF11268 CpPa04_RS03070 CpPa04_RS03075 PF00266 Aminotransferase class-V CpPa04_RS03080 PF00285 Citrate synthase CpPa04_RS03085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CpPa04_RS03090 PF01039 Carboxyl transferase domain CpPa04_RS03095 PF00080 Copper/zinc superoxide dismutase (SODC) CpPa04_RS03100 PF00248 Aldo/keto reductase family CpPa04_RS03105 PF00378 Enoyl-CoA hydratase/isomerase family CpPa04_RS03110 PF04341 CpPa04_RS03110 CpPa04_RS03115 PF00474 Sodium:solute symporter family CpPa04_RS03125 PF08924 Domain of unknown function (DUF1906) CpPa04_RS03125 PF10518 TAT (twin-arginine translocation) pathway signal sequence CpPa04_RS03130 PF00999 Sodium/hydrogen exchanger family CpPa04_RS03140 PF01554 MatE CpPa04_RS03145 PF00291 Pyridoxal-phosphate dependent enzyme CpPa04_RS03150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CpPa04_RS03150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CpPa04_RS03155 PF02423 Ornithine cyclodeaminase/mu-crystallin family CpPa04_RS03160 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CpPa04_RS03165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS03170 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS03175 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS03180 PF00005 ABC transporter CpPa04_RS03200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS03205 PF00462 Glutaredoxin CpPa04_RS03210 PF00186 Dihydrofolate reductase CpPa04_RS03215 PF00303 Thymidylate synthase CpPa04_RS03220 PF00459 Inositol monophosphatase family CpPa04_RS03230 PF00270 DEAD/DEAH box helicase CpPa04_RS03230 PF00271 Helicase conserved C-terminal domain CpPa04_RS03230 PF08494 CpPa04_RS03230 CpPa04_RS03235 PF03167 Uracil DNA glycosylase superfamily CpPa04_RS03240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CpPa04_RS03240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CpPa04_RS03245 PF03733 CpPa04_RS03245 CpPa04_RS03250 PF00342 Phosphoglucose isomerase CpPa04_RS03255 PF00171 Aldehyde dehydrogenase family CpPa04_RS03260 PF01817 Chorismate mutase type II CpPa04_RS03265 PF00580 UvrD/REP helicase N-terminal domain CpPa04_RS03265 PF13361 UvrD-like helicase C-terminal domain CpPa04_RS03270 PF01551 Peptidase family M23 CpPa04_RS03280 PF00551 Formyl transferase CpPa04_RS03285 PF01808 AICARFT/IMPCHase bienzyme CpPa04_RS03285 PF02142 MGS-like domain CpPa04_RS03290 PF00005 ABC transporter CpPa04_RS03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 CpPa04_RS03300 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS03305 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS03310 PF03328 HpcH/HpaI aldolase/citrate lyase family CpPa04_RS03315 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS03320 PF10335 CpPa04_RS03320 CpPa04_RS03325 PF01084 Ribosomal protein S18 CpPa04_RS03330 PF00253 Ribosomal protein S14p/S29e CpPa04_RS03335 PF00471 Ribosomal protein L33 CpPa04_RS03340 PF00830 Ribosomal L28 family CpPa04_RS03345 PF01197 Ribosomal protein L31 CpPa04_RS03350 PF01783 Ribosomal L32p protein family CpPa04_RS03355 PF00072 Response regulator receiver domain CpPa04_RS03355 PF00486 Transcriptional regulatory protein, C terminal CpPa04_RS03360 PF00512 His Kinase A (phospho-acceptor) domain CpPa04_RS03360 PF00672 HAMP domain CpPa04_RS03360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpPa04_RS03365 PF13180 PDZ domain CpPa04_RS03365 PF13365 Trypsin-like peptidase domain CpPa04_RS03370 PF00994 Probable molybdopterin binding domain CpPa04_RS03380 PF01741 Large-conductance mechanosensitive channel, MscL CpPa04_RS03390 PF01812 5-formyltetrahydrofolate cyclo-ligase family CpPa04_RS03395 PF00483 Nucleotidyl transferase CpPa04_RS03400 PF00994 Probable molybdopterin binding domain CpPa04_RS03400 PF03453 MoeA N-terminal region (domain I and II) CpPa04_RS03400 PF03454 MoeA C-terminal region (domain IV) CpPa04_RS03405 PF13302 Acetyltransferase (GNAT) domain CpPa04_RS03415 PF07681 CpPa04_RS03415 CpPa04_RS03420 PF13490 Putative zinc-finger CpPa04_RS03425 PF02366 CpPa04_RS03425 CpPa04_RS03425 PF16192 CpPa04_RS03425 CpPa04_RS03435 PF02028 BCCT family transporter CpPa04_RS03445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS03450 PF09334 tRNA synthetases class I (M) CpPa04_RS03455 PF01026 TatD related DNase CpPa04_RS03460 PF03990 CpPa04_RS03460 CpPa04_RS03460 PF06737 Transglycosylase-like domain CpPa04_RS03460 PF07501 G5 domain CpPa04_RS03465 PF00398 Ribosomal RNA adenine dimethylase CpPa04_RS03470 PF08544 GHMP kinases C terminal CpPa04_RS03475 PF00005 ABC transporter CpPa04_RS03475 PF12848 ABC transporter CpPa04_RS03475 PF16326 CpPa04_RS03475 CpPa04_RS03480 PF03992 Antibiotic biosynthesis monooxygenase CpPa04_RS03490 PF03976 Polyphosphate kinase 2 (PPK2) CpPa04_RS03495 PF04973 CpPa04_RS03495 CpPa04_RS03500 PF08282 haloacid dehalogenase-like hydrolase CpPa04_RS03505 PF16113 CpPa04_RS03505 CpPa04_RS03520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CpPa04_RS03520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CpPa04_RS03530 PF00561 alpha/beta hydrolase fold CpPa04_RS03535 PF00009 Elongation factor Tu GTP binding domain CpPa04_RS03535 PF16658 CpPa04_RS03535 CpPa04_RS03540 PF00106 short chain dehydrogenase CpPa04_RS03545 PF01195 Peptidyl-tRNA hydrolase CpPa04_RS03560 PF01195 Peptidyl-tRNA hydrolase CpPa04_RS03565 PF01386 Ribosomal L25p family CpPa04_RS03565 PF14693 Ribosomal protein TL5, C-terminal domain CpPa04_RS03570 PF00128 Alpha amylase, catalytic domain CpPa04_RS03570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CpPa04_RS03575 PF00156 Phosphoribosyl transferase domain CpPa04_RS03575 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CpPa04_RS03580 PF00132 Bacterial transferase hexapeptide (six repeats) CpPa04_RS03580 PF12804 MobA-like NTP transferase domain CpPa04_RS03585 PF07731 Multicopper oxidase CpPa04_RS03585 PF07732 Multicopper oxidase CpPa04_RS03590 PF03595 Voltage-dependent anion channel CpPa04_RS03600 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS03605 PF00270 DEAD/DEAH box helicase CpPa04_RS03605 PF00271 Helicase conserved C-terminal domain CpPa04_RS03605 PF02559 CarD-like/TRCF domain CpPa04_RS03605 PF03461 TRCF domain CpPa04_RS03610 PF13520 Amino acid permease CpPa04_RS03615 PF03819 MazG nucleotide pyrophosphohydrolase domain CpPa04_RS03620 PF13406 Transglycosylase SLT domain CpPa04_RS03625 PF00113 Enolase, C-terminal TIM barrel domain CpPa04_RS03625 PF03952 Enolase, N-terminal domain CpPa04_RS03630 PF04977 Septum formation initiator CpPa04_RS03635 PF04417 CpPa04_RS03635 CpPa04_RS03640 PF02541 Ppx/GppA phosphatase family CpPa04_RS03655 PF12833 Helix-turn-helix domain CpPa04_RS03660 PF12811 CpPa04_RS03660 CpPa04_RS03670 PF01272 Transcription elongation factor, GreA/GreB, C-term CpPa04_RS03670 PF03449 Transcription elongation factor, N-terminal CpPa04_RS03675 PF14155 CpPa04_RS03675 CpPa04_RS03680 PF02585 GlcNAc-PI de-N-acetylase CpPa04_RS03690 PF01255 Putative undecaprenyl diphosphate synthase CpPa04_RS03695 PF12724 Flavodoxin domain CpPa04_RS03700 PF00485 Phosphoribulokinase / Uridine kinase family CpPa04_RS03705 PF00464 Serine hydroxymethyltransferase CpPa04_RS03710 PF07690 Major Facilitator Superfamily CpPa04_RS03715 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS03725 PF03466 LysR substrate binding domain CpPa04_RS03730 PF08310 CpPa04_RS03730 CpPa04_RS03735 PF00583 Acetyltransferase (GNAT) family CpPa04_RS03740 PF07690 Major Facilitator Superfamily CpPa04_RS03745 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS03750 PF00206 Lyase CpPa04_RS03750 PF10415 Fumarase C C-terminus CpPa04_RS03755 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CpPa04_RS03760 PF14030 CpPa04_RS03760 CpPa04_RS03765 PF02609 Exonuclease VII small subunit CpPa04_RS03770 PF02601 CpPa04_RS03770 CpPa04_RS03770 PF13742 CpPa04_RS03770 CpPa04_RS03775 PF02401 LytB protein CpPa04_RS03785 PF01594 CpPa04_RS03785 CpPa04_RS03790 PF01926 50S ribosome-binding GTPase CpPa04_RS03790 PF06071 Protein of unknown function (DUF933) CpPa04_RS03795 PF03243 Alkylmercury lyase CpPa04_RS03800 PF04343 CpPa04_RS03800 CpPa04_RS03805 PF03831 PhnA protein CpPa04_RS03805 PF08274 PhnA Zinc-Ribbon CpPa04_RS03810 PF00005 ABC transporter CpPa04_RS03810 PF00664 ABC transporter transmembrane region CpPa04_RS03815 PF00005 ABC transporter CpPa04_RS03815 PF00664 ABC transporter transmembrane region CpPa04_RS03820 PF00005 ABC transporter CpPa04_RS03825 PF05661 CpPa04_RS03825 CpPa04_RS03830 PF02558 Ketopantoate reductase PanE/ApbA CpPa04_RS03830 PF08546 Ketopantoate reductase PanE/ApbA C terminal CpPa04_RS03835 PF09819 CpPa04_RS03835 CpPa04_RS03840 PF00005 ABC transporter CpPa04_RS03845 PF02361 Cobalt transport protein CpPa04_RS03850 PF13671 AAA domain CpPa04_RS03855 PF00293 NUDIX domain CpPa04_RS03860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS03865 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS03870 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS03870 PF12911 CpPa04_RS03870 CpPa04_RS03875 PF00005 ABC transporter CpPa04_RS03875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpPa04_RS03880 PF00089 Trypsin CpPa04_RS03885 PF03960 ArsC family CpPa04_RS03890 PF04167 Protein of unknown function (DUF402) CpPa04_RS03900 PF00009 Elongation factor Tu GTP binding domain CpPa04_RS03900 PF00679 Elongation factor G C-terminus CpPa04_RS03900 PF03144 Elongation factor Tu domain 2 CpPa04_RS03905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS03910 PF02585 GlcNAc-PI de-N-acetylase CpPa04_RS03920 PF00037 4Fe-4S binding domain CpPa04_RS03925 PF00155 Aminotransferase class I and II CpPa04_RS03930 PF04138 CpPa04_RS03930 CpPa04_RS03940 PF00324 Amino acid permease CpPa04_RS03945 PF14602 Hexapeptide repeat of succinyl-transferase CpPa04_RS03945 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CpPa04_RS03950 PF00324 Amino acid permease CpPa04_RS03955 PF14602 Hexapeptide repeat of succinyl-transferase CpPa04_RS03955 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CpPa04_RS03960 PF01546 Peptidase family M20/M25/M40 CpPa04_RS03960 PF07687 Peptidase dimerisation domain CpPa04_RS03965 PF03641 Possible lysine decarboxylase CpPa04_RS03970 PF00809 Pterin binding enzyme CpPa04_RS03975 PF00535 Glycosyl transferase family 2 CpPa04_RS03985 PF11314 CpPa04_RS03985 CpPa04_RS03990 PF08241 Methyltransferase domain CpPa04_RS03995 PF00251 Glycosyl hydrolases family 32 N-terminal domain CpPa04_RS04005 PF00534 Glycosyl transferases group 1 CpPa04_RS04005 PF13439 Glycosyltransferase Family 4 CpPa04_RS04010 PF00483 Nucleotidyl transferase CpPa04_RS04015 PF01596 O-methyltransferase CpPa04_RS04020 PF04542 Sigma-70 region 2 CpPa04_RS04020 PF08281 Sigma-70, region 4 CpPa04_RS04035 PF01883 Domain of unknown function DUF59 CpPa04_RS04035 PF10609 ParA/MinD ATPase like CpPa04_RS04040 PF06210 CpPa04_RS04040 CpPa04_RS04045 PF00571 CBS domain CpPa04_RS04045 PF03448 MgtE intracellular N domain CpPa04_RS04055 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CpPa04_RS04055 PF00676 Dehydrogenase E1 component CpPa04_RS04055 PF02779 Transketolase, pyrimidine binding domain CpPa04_RS04055 PF16078 CpPa04_RS04055 CpPa04_RS04055 PF16870 CpPa04_RS04055 CpPa04_RS04060 PF00005 ABC transporter CpPa04_RS04060 PF00664 ABC transporter transmembrane region CpPa04_RS04070 PF08501 Shikimate dehydrogenase substrate binding domain CpPa04_RS04075 PF00135 Carboxylesterase family CpPa04_RS04080 PF11575 CpPa04_RS04080 CpPa04_RS04095 PF01263 Aldose 1-epimerase CpPa04_RS04100 PF00474 Sodium:solute symporter family CpPa04_RS04110 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CpPa04_RS04110 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CpPa04_RS04115 PF00288 GHMP kinases N terminal domain CpPa04_RS04115 PF08544 GHMP kinases C terminal CpPa04_RS04115 PF10509 Galactokinase galactose-binding signature CpPa04_RS04120 PF00270 DEAD/DEAH box helicase CpPa04_RS04120 PF00271 Helicase conserved C-terminal domain CpPa04_RS04120 PF03880 DbpA RNA binding domain CpPa04_RS04130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CpPa04_RS04140 PF13395 HNH endonuclease CpPa04_RS04150 PF00176 SNF2 family N-terminal domain CpPa04_RS04150 PF00271 Helicase conserved C-terminal domain CpPa04_RS04150 PF12419 CpPa04_RS04150 CpPa04_RS04160 PF00149 Calcineurin-like phosphoesterase CpPa04_RS04165 PF13175 AAA ATPase domain CpPa04_RS04170 PF04264 YceI-like domain CpPa04_RS04175 PF12802 MarR family CpPa04_RS04180 PF04024 CpPa04_RS04180 CpPa04_RS04190 PF00455 CpPa04_RS04190 CpPa04_RS04190 PF08220 DeoR-like helix-turn-helix domain CpPa04_RS04205 PF02589 Uncharacterised ACR, YkgG family COG1556 CpPa04_RS04210 PF02589 Uncharacterised ACR, YkgG family COG1556 CpPa04_RS04210 PF11870 CpPa04_RS04210 CpPa04_RS04210 PF13183 4Fe-4S dicluster domain CpPa04_RS04215 PF02754 CpPa04_RS04215 CpPa04_RS04220 PF02652 CpPa04_RS04220 CpPa04_RS04225 PF00750 tRNA synthetases class I (R) CpPa04_RS04225 PF03485 Arginyl tRNA synthetase N terminal domain CpPa04_RS04225 PF05746 DALR anticodon binding domain CpPa04_RS04230 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CpPa04_RS04230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CpPa04_RS04235 PF00742 Homoserine dehydrogenase CpPa04_RS04235 PF01842 ACT domain CpPa04_RS04235 PF03447 Homoserine dehydrogenase, NAD binding domain CpPa04_RS04240 PF00288 GHMP kinases N terminal domain CpPa04_RS04240 PF08544 GHMP kinases C terminal CpPa04_RS04250 PF00501 AMP-binding enzyme CpPa04_RS04250 PF13193 AMP-binding enzyme C-terminal domain CpPa04_RS04255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpPa04_RS04255 PF07497 Rho termination factor, RNA-binding domain CpPa04_RS04255 PF07498 Rho termination factor, N-terminal domain CpPa04_RS04260 PF00472 RF-1 domain CpPa04_RS04260 PF03462 PCRF domain CpPa04_RS04265 PF05175 Methyltransferase small domain CpPa04_RS04270 PF01300 Telomere recombination CpPa04_RS04275 PF00953 Glycosyl transferase family 4 CpPa04_RS04285 PF00119 ATP synthase A chain CpPa04_RS04290 PF00137 ATP synthase subunit C CpPa04_RS04295 PF00430 ATP synthase B/B' CF(0) CpPa04_RS04300 PF00213 ATP synthase delta (OSCP) subunit CpPa04_RS04305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpPa04_RS04305 PF00306 ATP synthase alpha/beta chain, C terminal domain CpPa04_RS04305 PF02874 ATP synthase alpha/beta family, beta-barrel domain CpPa04_RS04310 PF00231 ATP synthase CpPa04_RS04315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CpPa04_RS04315 PF02874 ATP synthase alpha/beta family, beta-barrel domain CpPa04_RS04320 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CpPa04_RS04325 PF10739 CpPa04_RS04325 CpPa04_RS04330 PF01939 Protein of unknown function DUF91 CpPa04_RS04340 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CpPa04_RS04345 PF01910 Domain of unknown function DUF77 CpPa04_RS04350 PF00085 Thioredoxin CpPa04_RS04350 PF14561 Tetratricopeptide repeat CpPa04_RS04355 PF00128 Alpha amylase, catalytic domain CpPa04_RS04355 PF02806 Alpha amylase, C-terminal all-beta domain CpPa04_RS04355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CpPa04_RS04360 PF11896 Domain of unknown function (DUF3416) CpPa04_RS04365 PF00005 ABC transporter CpPa04_RS04380 PF01012 Electron transfer flavoprotein domain CpPa04_RS04385 PF00766 Electron transfer flavoprotein FAD-binding domain CpPa04_RS04385 PF01012 Electron transfer flavoprotein domain CpPa04_RS04390 PF00266 Aminotransferase class-V CpPa04_RS04395 PF08241 Methyltransferase domain CpPa04_RS04400 PF03054 tRNA methyl transferase CpPa04_RS04410 PF00929 Exonuclease CpPa04_RS04415 PF00533 BRCA1 C Terminus (BRCT) domain CpPa04_RS04415 PF01653 NAD-dependent DNA ligase adenylation domain CpPa04_RS04415 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CpPa04_RS04415 PF03120 NAD-dependent DNA ligase OB-fold domain CpPa04_RS04415 PF12826 Helix-hairpin-helix motif CpPa04_RS04425 PF02686 Glu-tRNAGln amidotransferase C subunit CpPa04_RS04430 PF01425 Amidase CpPa04_RS04435 PF00583 Acetyltransferase (GNAT) family CpPa04_RS04440 PF07690 Major Facilitator Superfamily CpPa04_RS04450 PF01032 FecCD transport family CpPa04_RS04455 PF00005 ABC transporter CpPa04_RS04460 PF01497 Periplasmic binding protein CpPa04_RS04465 PF00365 Phosphofructokinase CpPa04_RS04470 PF02637 GatB domain CpPa04_RS04470 PF02934 GatB/GatE catalytic domain CpPa04_RS04475 PF00248 Aldo/keto reductase family CpPa04_RS04480 PF01810 CpPa04_RS04480 CpPa04_RS04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CpPa04_RS04485 PF03466 LysR substrate binding domain CpPa04_RS04490 PF07510 CpPa04_RS04490 CpPa04_RS04495 PF07681 CpPa04_RS04495 CpPa04_RS04500 PF00920 Dehydratase family CpPa04_RS04505 PF10756 CpPa04_RS04505 CpPa04_RS04510 PF00924 Mechanosensitive ion channel CpPa04_RS04520 PF01842 ACT domain CpPa04_RS04520 PF10369 Small subunit of acetolactate synthase CpPa04_RS04525 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CpPa04_RS04525 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CpPa04_RS04530 PF01545 Cation efflux family CpPa04_RS04535 PF03235 CpPa04_RS04535 CpPa04_RS04545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CpPa04_RS04545 PF01842 ACT domain CpPa04_RS04545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CpPa04_RS04550 PF00180 Isocitrate/isopropylmalate dehydrogenase CpPa04_RS04555 PF00027 Cyclic nucleotide-binding domain CpPa04_RS04555 PF00571 CBS domain CpPa04_RS04555 PF03445 CpPa04_RS04555 CpPa04_RS04555 PF10335 CpPa04_RS04555 CpPa04_RS04560 PF00929 Exonuclease CpPa04_RS04570 PF01557 Fumarylacetoacetate (FAA) hydrolase family CpPa04_RS04570 PF10370 Domain of unknown function (DUF2437) CpPa04_RS04575 PF00425 chorismate binding enzyme CpPa04_RS04580 PF00749 tRNA synthetases class I (E and Q), catalytic domain CpPa04_RS04585 PF10503 Esterase PHB depolymerase CpPa04_RS04600 PF01083 Cutinase CpPa04_RS04610 PF04055 Radical SAM superfamily CpPa04_RS04610 PF06968 Biotin and Thiamin Synthesis associated domain CpPa04_RS04615 PF13328 HD domain CpPa04_RS04620 PF01614 Bacterial transcriptional regulator CpPa04_RS04620 PF09339 IclR helix-turn-helix domain CpPa04_RS04625 PF00330 Aconitase family (aconitate hydratase) CpPa04_RS04630 PF00694 Aconitase C-terminal domain CpPa04_RS04640 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CpPa04_RS04640 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CpPa04_RS04645 PF01820 D-ala D-ala ligase N-terminus CpPa04_RS04645 PF07478 D-ala D-ala ligase C-terminus CpPa04_RS04650 PF12028 CpPa04_RS04650 CpPa04_RS04655 PF00586 AIR synthase related protein, N-terminal domain CpPa04_RS04655 PF02769 AIR synthase related protein, C-terminal domain CpPa04_RS04660 PF03167 Uracil DNA glycosylase superfamily CpPa04_RS04665 PF02734 DAK2 domain CpPa04_RS04665 PF13684 Dihydroxyacetone kinase family CpPa04_RS04670 PF00270 DEAD/DEAH box helicase CpPa04_RS04670 PF00271 Helicase conserved C-terminal domain CpPa04_RS04675 PF00364 Biotin-requiring enzyme CpPa04_RS04680 PF03602 Conserved hypothetical protein 95 CpPa04_RS04685 PF01467 Cytidylyltransferase CpPa04_RS04690 PF01925 CpPa04_RS04690 CpPa04_RS04695 PF02567 Phenazine biosynthesis-like protein CpPa04_RS04700 PF00005 ABC transporter CpPa04_RS04705 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS04710 PF00497 Bacterial extracellular solute-binding proteins, family 3 CpPa04_RS04715 PF04018 CpPa04_RS04715 CpPa04_RS04725 PF00476 DNA polymerase family A CpPa04_RS04725 PF01367 5'-3' exonuclease, C-terminal SAM fold CpPa04_RS04725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CpPa04_RS04730 PF08241 Methyltransferase domain CpPa04_RS04735 PF00575 S1 RNA binding domain CpPa04_RS04740 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CpPa04_RS04740 PF00367 phosphotransferase system, EIIB CpPa04_RS04740 PF02378 Phosphotransferase system, EIIC CpPa04_RS04745 PF01121 Dephospho-CoA kinase CpPa04_RS04750 PF04055 Radical SAM superfamily CpPa04_RS04750 PF13186 Iron-sulfur cluster-binding domain CpPa04_RS04750 PF13353 4Fe-4S single cluster domain CpPa04_RS04755 PF00271 Helicase conserved C-terminal domain CpPa04_RS04755 PF02151 UvrB/uvrC motif CpPa04_RS04755 PF04851 Type III restriction enzyme, res subunit CpPa04_RS04755 PF12344 Ultra-violet resistance protein B CpPa04_RS04760 PF00582 Universal stress protein family CpPa04_RS04765 PF01443 Viral (Superfamily 1) RNA helicase CpPa04_RS04765 PF13245 Part of AAA domain CpPa04_RS04770 PF07681 CpPa04_RS04770 CpPa04_RS04775 PF00753 Metallo-beta-lactamase superfamily CpPa04_RS04780 PF00005 ABC transporter CpPa04_RS04785 PF00707 Translation initiation factor IF-3, C-terminal domain CpPa04_RS04785 PF05198 Translation initiation factor IF-3, N-terminal domain CpPa04_RS04790 PF01632 Ribosomal protein L35 CpPa04_RS04795 PF00453 Ribosomal protein L20 CpPa04_RS04805 PF00588 SpoU rRNA Methylase family CpPa04_RS04805 PF08032 RNA 2'-O ribose methyltransferase substrate binding CpPa04_RS04810 PF01409 tRNA synthetases class II core domain (F) CpPa04_RS04810 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CpPa04_RS04815 PF01588 Putative tRNA binding domain CpPa04_RS04815 PF03147 Ferredoxin-fold anticodon binding domain CpPa04_RS04815 PF03483 B3/4 domain CpPa04_RS04815 PF03484 tRNA synthetase B5 domain CpPa04_RS04820 PF01118 Semialdehyde dehydrogenase, NAD binding domain CpPa04_RS04820 PF02774 Semialdehyde dehydrogenase, dimerisation domain CpPa04_RS04825 PF01960 ArgJ family CpPa04_RS04830 PF00696 Amino acid kinase family CpPa04_RS04835 PF00202 Aminotransferase class-III CpPa04_RS04840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CpPa04_RS04840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CpPa04_RS04845 PF01316 Arginine repressor, DNA binding domain CpPa04_RS04845 PF02863 Arginine repressor, C-terminal domain CpPa04_RS04850 PF00764 Arginosuccinate synthase CpPa04_RS04855 PF00206 Lyase CpPa04_RS04855 PF14698 Argininosuccinate lyase C-terminal CpPa04_RS04860 PF03966 Trm112p-like protein CpPa04_RS04865 PF00579 tRNA synthetases class I (W and Y) CpPa04_RS04865 PF01479 S4 domain CpPa04_RS04895 PF13242 HAD-hyrolase-like CpPa04_RS04895 PF13344 Haloacid dehalogenase-like hydrolase CpPa04_RS04900 PF01479 S4 domain CpPa04_RS04900 PF01728 FtsJ-like methyltransferase CpPa04_RS04905 PF01513 ATP-NAD kinase CpPa04_RS04910 PF02463 RecF/RecN/SMC N terminal domain CpPa04_RS04915 PF12555 CpPa04_RS04915 CpPa04_RS04920 PF11382 CpPa04_RS04920 CpPa04_RS04925 PF00293 NUDIX domain CpPa04_RS04930 PF00589 Phage integrase family CpPa04_RS04930 PF02899 Phage integrase, N-terminal SAM-like domain CpPa04_RS04935 PF13614 AAA domain CpPa04_RS04940 PF02616 ScpA/B protein CpPa04_RS04945 PF13500 AAA domain CpPa04_RS04950 PF00854 POT family CpPa04_RS04955 PF00202 Aminotransferase class-III CpPa04_RS04960 PF13500 AAA domain CpPa04_RS04965 PF04079 Putative transcriptional regulators (Ypuh-like) CpPa04_RS04970 PF00849 RNA pseudouridylate synthase CpPa04_RS04970 PF01479 S4 domain CpPa04_RS04975 PF02224 Cytidylate kinase CpPa04_RS04980 PF01926 50S ribosome-binding GTPase CpPa04_RS04980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CpPa04_RS04990 PF08241 Methyltransferase domain CpPa04_RS04995 PF00756 Putative esterase CpPa04_RS05000 PF09924 Uncharacterized conserved protein (DUF2156) CpPa04_RS05005 PF01497 Periplasmic binding protein CpPa04_RS05010 PF01032 FecCD transport family CpPa04_RS05015 PF01032 FecCD transport family CpPa04_RS05020 PF00005 ABC transporter CpPa04_RS05025 PF04183 IucA / IucC family CpPa04_RS05025 PF06276 Ferric iron reductase FhuF-like transporter CpPa04_RS05030 PF07690 Major Facilitator Superfamily CpPa04_RS05050 PF14659 Phage integrase, N-terminal SAM-like domain CpPa04_RS05065 PF02566 OsmC-like protein CpPa04_RS05065 PF12146 Putative lysophospholipase CpPa04_RS05070 PF01043 SecA preprotein cross-linking domain CpPa04_RS05070 PF07516 SecA Wing and Scaffold domain CpPa04_RS05070 PF07517 SecA DEAD-like domain CpPa04_RS05075 PF16697 CpPa04_RS05075 CpPa04_RS05080 PF00376 MerR family regulatory protein CpPa04_RS05085 PF02577 Bifunctional nuclease CpPa04_RS05090 PF13411 MerR HTH family regulatory protein CpPa04_RS05105 PF00571 CBS domain CpPa04_RS05105 PF01595 CpPa04_RS05105 CpPa04_RS05110 PF00571 CBS domain CpPa04_RS05110 PF01595 CpPa04_RS05110 CpPa04_RS05110 PF03471 Transporter associated domain CpPa04_RS05115 PF00270 DEAD/DEAH box helicase CpPa04_RS05115 PF00271 Helicase conserved C-terminal domain CpPa04_RS05120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CpPa04_RS05120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CpPa04_RS05125 PF03061 Thioesterase superfamily CpPa04_RS05130 PF01544 CorA-like Mg2+ transporter protein CpPa04_RS05135 PF13649 Methyltransferase domain CpPa04_RS05140 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpPa04_RS05145 PF02353 Mycolic acid cyclopropane synthetase CpPa04_RS05150 PF07690 Major Facilitator Superfamily CpPa04_RS05165 PF04264 YceI-like domain CpPa04_RS05175 PF13397 Domain of unknown function (DUF4109) CpPa04_RS05180 PF00535 Glycosyl transferase family 2 CpPa04_RS05185 PF00795 Carbon-nitrogen hydrolase CpPa04_RS05190 PF04186 CpPa04_RS05190 CpPa04_RS05195 PF02514 CpPa04_RS05195 CpPa04_RS05200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CpPa04_RS05205 PF02570 Precorrin-8X methylmutase CpPa04_RS05210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS05215 PF02571 CpPa04_RS05215 CpPa04_RS05220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS05225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS05230 PF00106 short chain dehydrogenase CpPa04_RS05235 PF00557 Metallopeptidase family M24 CpPa04_RS05235 PF01321 Creatinase/Prolidase N-terminal domain CpPa04_RS05240 PF00270 DEAD/DEAH box helicase CpPa04_RS05240 PF00271 Helicase conserved C-terminal domain CpPa04_RS05240 PF08148 DSHCT (NUC185) domain CpPa04_RS05240 PF13234 rRNA-processing arch domain CpPa04_RS05245 PF00902 Sec-independent protein translocase protein (TatC) CpPa04_RS05250 PF02416 mttA/Hcf106 family CpPa04_RS05255 PF13280 CpPa04_RS05255 CpPa04_RS05260 PF13280 CpPa04_RS05260 CpPa04_RS05265 PF03136 Pup-ligase protein CpPa04_RS05270 PF05639 Pup-like protein CpPa04_RS05275 PF03136 Pup-ligase protein CpPa04_RS05280 PF00004 ATPase family associated with various cellular activities (AAA) CpPa04_RS05280 PF16450 CpPa04_RS05280 CpPa04_RS05285 PF08704 tRNA methyltransferase complex GCD14 subunit CpPa04_RS05285 PF14801 tRNA methyltransferase complex GCD14 subunit N-term CpPa04_RS05290 PF02127 Aminopeptidase I zinc metalloprotease (M18) CpPa04_RS05295 PF12705 PD-(D/E)XK nuclease superfamily CpPa04_RS05305 PF01268 Formate--tetrahydrofolate ligase CpPa04_RS05310 PF00206 Lyase CpPa04_RS05310 PF10415 Fumarase C C-terminus CpPa04_RS05315 PF03605 CpPa04_RS05315 CpPa04_RS05320 PF01634 ATP phosphoribosyltransferase CpPa04_RS05320 PF08029 HisG, C-terminal domain CpPa04_RS05325 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CpPa04_RS05330 PF13419 Haloacid dehalogenase-like hydrolase CpPa04_RS05335 PF00809 Pterin binding enzyme CpPa04_RS05335 PF02310 B12 binding domain CpPa04_RS05335 PF02574 Homocysteine S-methyltransferase CpPa04_RS05335 PF02607 B12 binding domain CpPa04_RS05335 PF02965 Vitamin B12 dependent methionine synthase, activation domain CpPa04_RS05345 PF01406 tRNA synthetases class I (C) catalytic domain CpPa04_RS05350 PF02673 CpPa04_RS05350 CpPa04_RS05355 PF00248 Aldo/keto reductase family CpPa04_RS05365 PF01180 Dihydroorotate dehydrogenase CpPa04_RS05380 PF01161 Phosphatidylethanolamine-binding protein CpPa04_RS05385 PF00381 PTS HPr component phosphorylation site CpPa04_RS05385 PF03610 PTS system fructose IIA component CpPa04_RS05390 PF02734 DAK2 domain CpPa04_RS05395 PF02733 Dak1 domain CpPa04_RS05405 PF00005 ABC transporter CpPa04_RS05410 PF00005 ABC transporter CpPa04_RS05415 PF06224 CpPa04_RS05415 CpPa04_RS05420 PF00106 short chain dehydrogenase CpPa04_RS05420 PF13561 Enoyl-(Acyl carrier protein) reductase CpPa04_RS05425 PF03308 ArgK protein CpPa04_RS05430 PF01642 Methylmalonyl-CoA mutase CpPa04_RS05430 PF02310 B12 binding domain CpPa04_RS05435 PF01642 Methylmalonyl-CoA mutase CpPa04_RS05440 PF09335 CpPa04_RS05440 CpPa04_RS05450 PF01145 SPFH domain / Band 7 family CpPa04_RS05455 PF01957 NfeD-like C-terminal, partner-binding CpPa04_RS05460 PF11296 CpPa04_RS05460 CpPa04_RS05470 PF00762 Ferrochelatase CpPa04_RS05475 PF00877 NlpC/P60 family CpPa04_RS05485 PF00330 Aconitase family (aconitate hydratase) CpPa04_RS05485 PF00694 Aconitase C-terminal domain CpPa04_RS05490 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS05495 PF00117 Glutamine amidotransferase class-I CpPa04_RS05500 PF13740 ACT domain CpPa04_RS05505 PF05167 Uncharacterised ACR (DUF711) CpPa04_RS05515 PF13191 AAA ATPase domain CpPa04_RS05525 PF00005 ABC transporter CpPa04_RS05525 PF12848 ABC transporter CpPa04_RS05530 PF01883 Domain of unknown function DUF59 CpPa04_RS05535 PF01592 NifU-like N terminal domain CpPa04_RS05540 PF00266 Aminotransferase class-V CpPa04_RS05545 PF00005 ABC transporter CpPa04_RS05550 PF01458 Uncharacterized protein family (UPF0051) CpPa04_RS05555 PF01458 Uncharacterized protein family (UPF0051) CpPa04_RS05560 PF01022 Bacterial regulatory protein, arsR family CpPa04_RS05570 PF00005 ABC transporter CpPa04_RS05575 PF12698 ABC-2 family transporter protein CpPa04_RS05580 PF02628 CpPa04_RS05580 CpPa04_RS05585 PF01040 UbiA prenyltransferase family CpPa04_RS05590 PF00456 Transketolase, thiamine diphosphate binding domain CpPa04_RS05590 PF02779 Transketolase, pyrimidine binding domain CpPa04_RS05590 PF02780 Transketolase, C-terminal domain CpPa04_RS05595 PF00923 Transaldolase CpPa04_RS05600 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CpPa04_RS05600 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CpPa04_RS05605 PF10128 CpPa04_RS05605 CpPa04_RS05610 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CpPa04_RS05615 PF03840 Preprotein translocase SecG subunit CpPa04_RS05620 PF00311 Phosphoenolpyruvate carboxylase CpPa04_RS05625 PF00121 Triosephosphate isomerase CpPa04_RS05630 PF00162 Phosphoglycerate kinase CpPa04_RS05635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CpPa04_RS05635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CpPa04_RS05640 PF02650 WhiA C-terminal HTH domain CpPa04_RS05640 PF10298 WhiA N-terminal LAGLIDADG-like domain CpPa04_RS05640 PF14527 WhiA LAGLIDADG-like domain CpPa04_RS05645 PF01933 Uncharacterised protein family UPF0052 CpPa04_RS05650 PF03668 CpPa04_RS05650 CpPa04_RS05655 PF01541 GIY-YIG catalytic domain CpPa04_RS05655 PF02151 UvrB/uvrC motif CpPa04_RS05655 PF08459 UvrC Helix-hairpin-helix N-terminal CpPa04_RS05655 PF12826 Helix-hairpin-helix motif CpPa04_RS05660 PF10756 CpPa04_RS05660 CpPa04_RS05665 PF00885 6,7-dimethyl-8-ribityllumazine synthase CpPa04_RS05670 PF00925 GTP cyclohydrolase II CpPa04_RS05670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CpPa04_RS05675 PF00677 Lumazine binding domain CpPa04_RS05680 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CpPa04_RS05680 PF01872 RibD C-terminal domain CpPa04_RS05685 PF00834 Ribulose-phosphate 3 epimerase family CpPa04_RS05690 PF01029 NusB family CpPa04_RS05690 PF01189 NOL1/NOP2/sun family CpPa04_RS05695 PF00551 Formyl transferase CpPa04_RS05695 PF02911 Formyl transferase, C-terminal domain CpPa04_RS05700 PF01327 Polypeptide deformylase CpPa04_RS05710 PF00438 S-adenosylmethionine synthetase, N-terminal domain CpPa04_RS05710 PF02772 S-adenosylmethionine synthetase, central domain CpPa04_RS05710 PF02773 S-adenosylmethionine synthetase, C-terminal domain CpPa04_RS05715 PF02441 Flavoprotein CpPa04_RS05715 PF04127 DNA / pantothenate metabolism flavoprotein CpPa04_RS05720 PF01192 RNA polymerase Rpb6 CpPa04_RS05725 PF00625 Guanylate kinase CpPa04_RS05735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CpPa04_RS05740 PF02142 MGS-like domain CpPa04_RS05740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CpPa04_RS05740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CpPa04_RS05745 PF00117 Glutamine amidotransferase class-I CpPa04_RS05745 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CpPa04_RS05750 PF01979 Amidohydrolase family CpPa04_RS05755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CpPa04_RS05755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CpPa04_RS05760 PF00156 Phosphoribosyl transferase domain CpPa04_RS05765 PF01370 NAD dependent epimerase/dehydratase family CpPa04_RS05765 PF08338 Domain of unknown function (DUF1731) CpPa04_RS05770 PF10722 Putative bacterial sensory transduction regulator CpPa04_RS05780 PF01029 NusB family CpPa04_RS05785 PF01132 Elongation factor P (EF-P) OB domain CpPa04_RS05785 PF08207 Elongation factor P (EF-P) KOW-like domain CpPa04_RS05785 PF09285 Elongation factor P, C-terminal CpPa04_RS05790 PF00557 Metallopeptidase family M24 CpPa04_RS05790 PF01321 Creatinase/Prolidase N-terminal domain CpPa04_RS05795 PF01220 Dehydroquinase class II CpPa04_RS05800 PF01761 3-dehydroquinate synthase CpPa04_RS05805 PF01202 Shikimate kinase CpPa04_RS05810 PF01264 Chorismate synthase CpPa04_RS05815 PF01478 Type IV leader peptidase family CpPa04_RS05820 PF01488 Shikimate / quinate 5-dehydrogenase CpPa04_RS05820 PF08501 Shikimate dehydrogenase substrate binding domain CpPa04_RS05825 PF02618 YceG-like family CpPa04_RS05830 PF03652 Uncharacterised protein family (UPF0081) CpPa04_RS05835 PF01411 tRNA synthetases class II (A) CpPa04_RS05835 PF02272 DHHA1 domain CpPa04_RS05835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CpPa04_RS05840 PF00004 ATPase family associated with various cellular activities (AAA) CpPa04_RS05840 PF12002 MgsA AAA+ ATPase C terminal CpPa04_RS05840 PF16193 CpPa04_RS05840 CpPa04_RS05845 PF01636 Phosphotransferase enzyme family CpPa04_RS05850 PF00152 tRNA synthetases class II (D, K and N) CpPa04_RS05850 PF01336 OB-fold nucleic acid binding domain CpPa04_RS05850 PF02938 GAD domain CpPa04_RS05855 PF04228 CpPa04_RS05855 CpPa04_RS05860 PF00176 SNF2 family N-terminal domain CpPa04_RS05860 PF00271 Helicase conserved C-terminal domain CpPa04_RS05865 PF12698 ABC-2 family transporter protein CpPa04_RS05875 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS05880 PF03358 NADPH-dependent FMN reductase CpPa04_RS05885 PF03313 CpPa04_RS05885 CpPa04_RS05885 PF03315 Serine dehydratase beta chain CpPa04_RS05890 PF03328 HpcH/HpaI aldolase/citrate lyase family CpPa04_RS05895 PF01575 MaoC like domain CpPa04_RS05900 PF02515 CoA-transferase family III CpPa04_RS05905 PF03129 Anticodon binding domain CpPa04_RS05905 PF13393 Histidyl-tRNA synthetase CpPa04_RS05910 PF00753 Metallo-beta-lactamase superfamily CpPa04_RS05915 PF08534 Redoxin CpPa04_RS05920 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CpPa04_RS05930 PF02824 TGS domain CpPa04_RS05930 PF04607 Region found in RelA / SpoT proteins CpPa04_RS05930 PF13291 ACT domain CpPa04_RS05930 PF13328 HD domain CpPa04_RS05935 PF00156 Phosphoribosyl transferase domain CpPa04_RS05940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS05945 PF02355 Protein export membrane protein CpPa04_RS05945 PF07549 SecD/SecF GG Motif CpPa04_RS05950 PF02355 Protein export membrane protein CpPa04_RS05950 PF07549 SecD/SecF GG Motif CpPa04_RS05955 PF02699 Preprotein translocase subunit CpPa04_RS05960 PF05491 Holliday junction DNA helicase ruvB C-terminus CpPa04_RS05960 PF05496 Holliday junction DNA helicase ruvB N-terminus CpPa04_RS05965 PF01330 RuvA N terminal domain CpPa04_RS05965 PF07499 RuvA, C-terminal domain CpPa04_RS05965 PF14520 Helix-hairpin-helix domain CpPa04_RS05970 PF02075 Crossover junction endodeoxyribonuclease RuvC CpPa04_RS05975 PF01709 Transcriptional regulator CpPa04_RS05980 PF13622 Thioesterase-like superfamily CpPa04_RS05990 PF03744 CpPa04_RS05990 CpPa04_RS05995 PF00155 Aminotransferase class I and II CpPa04_RS06005 PF13439 Glycosyltransferase Family 4 CpPa04_RS06005 PF13692 Glycosyl transferases group 1 CpPa04_RS06010 PF03279 CpPa04_RS06010 CpPa04_RS06015 PF01066 CDP-alcohol phosphatidyltransferase CpPa04_RS06020 PF01230 HIT domain CpPa04_RS06025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpPa04_RS06025 PF03129 Anticodon binding domain CpPa04_RS06025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CpPa04_RS06030 PF04261 Dyp-type peroxidase family CpPa04_RS06035 PF04314 Protein of unknown function (DUF461) CpPa04_RS06040 PF04234 CopC domain CpPa04_RS06075 PF01872 RibD C-terminal domain CpPa04_RS06080 PF09594 CpPa04_RS06080 CpPa04_RS06085 PF01641 SelR domain CpPa04_RS06090 PF06778 Chlorite dismutase CpPa04_RS06095 PF11452 CpPa04_RS06095 CpPa04_RS06100 PF00570 HRDC domain CpPa04_RS06100 PF01612 3'-5' exonuclease CpPa04_RS06105 PF02779 Transketolase, pyrimidine binding domain CpPa04_RS06105 PF02780 Transketolase, C-terminal domain CpPa04_RS06105 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CpPa04_RS06110 PF01938 TRAM domain CpPa04_RS06110 PF05958 tRNA (Uracil-5-)-methyltransferase CpPa04_RS06115 PF11361 CpPa04_RS06115 CpPa04_RS06120 PF12502 CpPa04_RS06120 CpPa04_RS06125 PF00692 dUTPase CpPa04_RS06130 PF11292 CpPa04_RS06130 CpPa04_RS06135 PF13834 CpPa04_RS06135 CpPa04_RS06140 PF00459 Inositol monophosphatase family CpPa04_RS06145 PF00480 ROK family CpPa04_RS06150 PF00140 Sigma-70 factor, region 1 CpPa04_RS06150 PF04539 Sigma-70 region 3 CpPa04_RS06150 PF04542 Sigma-70 region 2 CpPa04_RS06150 PF04545 Sigma-70, region 4 CpPa04_RS06160 PF04851 Type III restriction enzyme, res subunit CpPa04_RS06165 PF11238 CpPa04_RS06165 CpPa04_RS06170 PF11298 CpPa04_RS06170 CpPa04_RS06175 PF05175 Methyltransferase small domain CpPa04_RS06180 PF02580 D-Tyr-tRNA(Tyr) deacylase CpPa04_RS06185 PF00140 Sigma-70 factor, region 1 CpPa04_RS06185 PF04539 Sigma-70 region 3 CpPa04_RS06185 PF04542 Sigma-70 region 2 CpPa04_RS06185 PF04545 Sigma-70, region 4 CpPa04_RS06190 PF01325 Iron dependent repressor, N-terminal DNA binding domain CpPa04_RS06190 PF02742 Iron dependent repressor, metal binding and dimerisation domain CpPa04_RS06195 PF01370 NAD dependent epimerase/dehydratase family CpPa04_RS06200 PF13830 CpPa04_RS06200 CpPa04_RS06205 PF09754 PAC2 family CpPa04_RS06210 PF00270 DEAD/DEAH box helicase CpPa04_RS06210 PF00271 Helicase conserved C-terminal domain CpPa04_RS06210 PF12029 CpPa04_RS06210 CpPa04_RS06215 PF02627 Carboxymuconolactone decarboxylase family CpPa04_RS06220 PF00578 AhpC/TSA family CpPa04_RS06225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CpPa04_RS06225 PF03466 LysR substrate binding domain CpPa04_RS06235 PF00270 DEAD/DEAH box helicase CpPa04_RS06235 PF00271 Helicase conserved C-terminal domain CpPa04_RS06235 PF04408 Helicase associated domain (HA2) CpPa04_RS06235 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CpPa04_RS06235 PF11898 CpPa04_RS06235 CpPa04_RS06240 PF03477 ATP cone domain CpPa04_RS06250 PF00717 Peptidase S24-like CpPa04_RS06250 PF01726 LexA DNA binding domain CpPa04_RS06255 PF00455 CpPa04_RS06255 CpPa04_RS06255 PF08220 DeoR-like helix-turn-helix domain CpPa04_RS06260 PF00391 PEP-utilising enzyme, mobile domain CpPa04_RS06260 PF02896 PEP-utilising enzyme, TIM barrel domain CpPa04_RS06260 PF05524 PEP-utilising enzyme, N-terminal CpPa04_RS06265 PF00455 CpPa04_RS06265 CpPa04_RS06265 PF08220 DeoR-like helix-turn-helix domain CpPa04_RS06270 PF00294 pfkB family carbohydrate kinase CpPa04_RS06275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CpPa04_RS06275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CpPa04_RS06275 PF02378 Phosphotransferase system, EIIC CpPa04_RS06285 PF00381 PTS HPr component phosphorylation site CpPa04_RS06290 PF00296 Luciferase-like monooxygenase CpPa04_RS06295 PF03358 NADPH-dependent FMN reductase CpPa04_RS06300 PF00860 Permease family CpPa04_RS06305 PF01926 50S ribosome-binding GTPase CpPa04_RS06305 PF13167 CpPa04_RS06305 CpPa04_RS06305 PF16360 CpPa04_RS06305 CpPa04_RS06320 PF01678 Diaminopimelate epimerase CpPa04_RS06325 PF01715 IPP transferase CpPa04_RS06335 PF03993 CpPa04_RS06335 CpPa04_RS06350 PF00919 Uncharacterized protein family UPF0004 CpPa04_RS06350 PF04055 Radical SAM superfamily CpPa04_RS06355 PF02631 RecX family CpPa04_RS06360 PF00154 recA bacterial DNA recombination protein CpPa04_RS06365 PF11248 CpPa04_RS06365 CpPa04_RS06370 PF02632 BioY family CpPa04_RS06375 PF00005 ABC transporter CpPa04_RS06380 PF02361 Cobalt transport protein CpPa04_RS06385 PF04012 CpPa04_RS06385 CpPa04_RS06390 PF13560 Helix-turn-helix domain CpPa04_RS06395 PF02464 Competence-damaged protein CpPa04_RS06400 PF01066 CDP-alcohol phosphatidyltransferase CpPa04_RS06405 PF03795 YCII-related domain CpPa04_RS06410 PF03741 CpPa04_RS06410 CpPa04_RS06415 PF01580 FtsK/SpoIIIE family CpPa04_RS06415 PF09397 Ftsk gamma domain CpPa04_RS06415 PF13491 CpPa04_RS06415 CpPa04_RS06425 PF07521 RNA-metabolising metallo-beta-lactamase CpPa04_RS06425 PF12706 Beta-lactamase superfamily domain CpPa04_RS06430 PF00701 Dihydrodipicolinate synthetase family CpPa04_RS06435 PF02511 Thymidylate synthase complementing protein CpPa04_RS06440 PF01113 Dihydrodipicolinate reductase, N-terminus CpPa04_RS06440 PF05173 Dihydrodipicolinate reductase, C-terminus CpPa04_RS06445 PF00013 KH domain CpPa04_RS06445 PF00575 S1 RNA binding domain CpPa04_RS06445 PF01138 3' exoribonuclease family, domain 1 CpPa04_RS06445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CpPa04_RS06450 PF00312 Ribosomal protein S15 CpPa04_RS06455 PF01156 Inosine-uridine preferring nucleoside hydrolase CpPa04_RS06460 PF01687 Riboflavin kinase CpPa04_RS06460 PF06574 FAD synthetase CpPa04_RS06465 PF01509 TruB family pseudouridylate synthase (N terminal domain) CpPa04_RS06465 PF09142 tRNA Pseudouridine synthase II, C terminal CpPa04_RS06465 PF16198 CpPa04_RS06465 CpPa04_RS06470 PF01648 4'-phosphopantetheinyl transferase superfamily CpPa04_RS06475 PF00149 Calcineurin-like phosphoesterase CpPa04_RS06480 PF01554 MatE CpPa04_RS06485 PF01368 DHH family CpPa04_RS06485 PF02272 DHHA1 domain CpPa04_RS06490 PF02033 Ribosome-binding factor A CpPa04_RS06495 PF00009 Elongation factor Tu GTP binding domain CpPa04_RS06495 PF04760 Translation initiation factor IF-2, N-terminal region CpPa04_RS06495 PF11987 Translation-initiation factor 2 CpPa04_RS06500 PF04296 Protein of unknown function (DUF448) CpPa04_RS06505 PF13184 NusA-like KH domain CpPa04_RS06510 PF02576 Uncharacterised BCR, YhbC family COG0779 CpPa04_RS06515 PF14530 Domain of unknown function (DUF4439) CpPa04_RS06520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpPa04_RS06520 PF03129 Anticodon binding domain CpPa04_RS06520 PF04073 Aminoacyl-tRNA editing domain CpPa04_RS06525 PF03883 CpPa04_RS06525 CpPa04_RS06530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CpPa04_RS06540 PF02492 CobW/HypB/UreG, nucleotide-binding domain CpPa04_RS06540 PF07683 Cobalamin synthesis protein cobW C-terminal domain CpPa04_RS06545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CpPa04_RS06550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CpPa04_RS06550 PF07685 CobB/CobQ-like glutamine amidotransferase domain CpPa04_RS06555 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CpPa04_RS06560 PF13519 von Willebrand factor type A domain CpPa04_RS06565 PF07728 AAA domain (dynein-related subfamily) CpPa04_RS06570 PF06039 CpPa04_RS06570 CpPa04_RS06575 PF12146 Putative lysophospholipase CpPa04_RS06580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CpPa04_RS06580 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpPa04_RS06590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CpPa04_RS06590 PF07685 CobB/CobQ-like glutamine amidotransferase domain CpPa04_RS06595 PF00557 Metallopeptidase family M24 CpPa04_RS06600 PF00905 Penicillin binding protein transpeptidase domain CpPa04_RS06600 PF05223 NTF2-like N-terminal transpeptidase domain CpPa04_RS06605 PF04551 GcpE protein CpPa04_RS06610 PF02163 Peptidase family M50 CpPa04_RS06610 PF13180 PDZ domain CpPa04_RS06615 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CpPa04_RS06615 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CpPa04_RS06615 PF13288 DXP reductoisomerase C-terminal domain CpPa04_RS06625 PF10939 CpPa04_RS06625 CpPa04_RS06635 PF06305 CpPa04_RS06635 CpPa04_RS06640 PF01148 Cytidylyltransferase family CpPa04_RS06645 PF01765 Ribosome recycling factor CpPa04_RS06650 PF00696 Amino acid kinase family CpPa04_RS06655 PF00889 Elongation factor TS CpPa04_RS06660 PF00318 Ribosomal protein S2 CpPa04_RS06670 PF00589 Phage integrase family CpPa04_RS06670 PF02899 Phage integrase, N-terminal SAM-like domain CpPa04_RS06675 PF02481 DNA recombination-mediator protein A CpPa04_RS06680 PF01078 Magnesium chelatase, subunit ChlI CpPa04_RS06680 PF13335 CpPa04_RS06680 CpPa04_RS06680 PF13541 Subunit ChlI of Mg-chelatase CpPa04_RS06685 PF02021 Uncharacterised protein family UPF0102 CpPa04_RS06690 PF10611 CpPa04_RS06690 CpPa04_RS06695 PF01351 Ribonuclease HII CpPa04_RS06700 PF00717 Peptidase S24-like CpPa04_RS06700 PF10502 Signal peptidase, peptidase S26 CpPa04_RS06705 PF01245 Ribosomal protein L19 CpPa04_RS06710 PF00575 S1 RNA binding domain CpPa04_RS06710 PF09371 Tex-like protein N-terminal domain CpPa04_RS06710 PF12836 Helix-hairpin-helix motif CpPa04_RS06710 PF16921 CpPa04_RS06710 CpPa04_RS06715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CpPa04_RS06715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CpPa04_RS06725 PF01746 tRNA (Guanine-1)-methyltransferase CpPa04_RS06730 PF01782 RimM N-terminal domain CpPa04_RS06730 PF05239 PRC-barrel domain CpPa04_RS06740 PF00886 Ribosomal protein S16 CpPa04_RS06745 PF00448 SRP54-type protein, GTPase domain CpPa04_RS06745 PF02881 SRP54-type protein, helical bundle domain CpPa04_RS06745 PF02978 Signal peptide binding domain CpPa04_RS06750 PF01966 HD domain CpPa04_RS06755 PF00543 Nitrogen regulatory protein P-II CpPa04_RS06760 PF00448 SRP54-type protein, GTPase domain CpPa04_RS06760 PF02881 SRP54-type protein, helical bundle domain CpPa04_RS06770 PF02463 RecF/RecN/SMC N terminal domain CpPa04_RS06770 PF06470 SMC proteins Flexible Hinge Domain CpPa04_RS06775 PF00708 Acylphosphatase CpPa04_RS06780 PF01235 CpPa04_RS06780 CpPa04_RS06785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CpPa04_RS06785 PF06827 Zinc finger found in FPG and IleRS CpPa04_RS06785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CpPa04_RS06790 PF00035 Double-stranded RNA binding motif CpPa04_RS06790 PF14622 Ribonuclease-III-like CpPa04_RS06795 PF02620 CpPa04_RS06795 CpPa04_RS06810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CpPa04_RS06810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CpPa04_RS06815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CpPa04_RS06815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CpPa04_RS06820 PF02595 Glycerate kinase family CpPa04_RS06835 PF01546 Peptidase family M20/M25/M40 CpPa04_RS06835 PF07687 Peptidase dimerisation domain CpPa04_RS06840 PF04134 CpPa04_RS06840 CpPa04_RS06845 PF00343 Carbohydrate phosphorylase CpPa04_RS06850 PF10517 CpPa04_RS06850 CpPa04_RS06855 PF00224 Pyruvate kinase, barrel domain CpPa04_RS06855 PF02887 Pyruvate kinase, alpha/beta domain CpPa04_RS06860 PF01790 CpPa04_RS06860 CpPa04_RS06865 PF00218 Indole-3-glycerol phosphate synthase CpPa04_RS06870 PF09534 CpPa04_RS06870 CpPa04_RS06875 PF01502 Phosphoribosyl-AMP cyclohydrolase CpPa04_RS06880 PF00977 Histidine biosynthesis protein CpPa04_RS06885 PF00459 Inositol monophosphatase family CpPa04_RS06890 PF00977 Histidine biosynthesis protein CpPa04_RS06895 PF00117 Glutamine amidotransferase class-I CpPa04_RS06900 PF07690 Major Facilitator Superfamily CpPa04_RS06910 PF00475 Imidazoleglycerol-phosphate dehydratase CpPa04_RS06915 PF00155 Aminotransferase class I and II CpPa04_RS06920 PF00815 Histidinol dehydrogenase CpPa04_RS06925 PF10722 Putative bacterial sensory transduction regulator CpPa04_RS06940 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS06940 PF02909 Tetracyclin repressor, C-terminal all-alpha domain CpPa04_RS06945 PF00128 Alpha amylase, catalytic domain CpPa04_RS06945 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CpPa04_RS06950 PF00929 Exonuclease CpPa04_RS06960 PF04607 Region found in RelA / SpoT proteins CpPa04_RS06965 PF01479 S4 domain CpPa04_RS06975 PF01205 Uncharacterized protein family UPF0029 CpPa04_RS06975 PF09186 Domain of unknown function (DUF1949) CpPa04_RS06980 PF00291 Pyridoxal-phosphate dependent enzyme CpPa04_RS06980 PF00585 C-terminal regulatory domain of Threonine dehydratase CpPa04_RS06985 PF02811 PHP domain CpPa04_RS06985 PF07733 Bacterial DNA polymerase III alpha subunit CpPa04_RS06985 PF14579 Helix-hairpin-helix motif CpPa04_RS06990 PF00892 EamA-like transporter family CpPa04_RS07000 PF00849 RNA pseudouridylate synthase CpPa04_RS07005 PF01252 CpPa04_RS07005 CpPa04_RS07020 PF00710 Asparaginase CpPa04_RS07025 PF00817 impB/mucB/samB family CpPa04_RS07025 PF11798 IMS family HHH motif CpPa04_RS07025 PF11799 impB/mucB/samB family C-terminal domain CpPa04_RS07030 PF00133 tRNA synthetases class I (I, L, M and V) CpPa04_RS07030 PF08264 Anticodon-binding domain of tRNA CpPa04_RS07040 PF05103 DivIVA protein CpPa04_RS07045 PF02325 CpPa04_RS07045 CpPa04_RS07050 PF04472 Protein of unknown function (DUF552) CpPa04_RS07060 PF02578 Multi-copper polyphenol oxidoreductase laccase CpPa04_RS07065 PF00091 Tubulin/FtsZ family, GTPase domain CpPa04_RS07065 PF12327 FtsZ family, C-terminal domain CpPa04_RS07070 PF03799 Cell division protein FtsQ CpPa04_RS07070 PF08478 POTRA domain, FtsQ-type CpPa04_RS07075 PF01225 Mur ligase family, catalytic domain CpPa04_RS07075 PF02875 Mur ligase family, glutamate ligase domain CpPa04_RS07075 PF08245 Mur ligase middle domain CpPa04_RS07080 PF03033 Glycosyltransferase family 28 N-terminal domain CpPa04_RS07080 PF04101 Glycosyltransferase family 28 C-terminal domain CpPa04_RS07085 PF01098 CpPa04_RS07085 CpPa04_RS07090 PF08245 Mur ligase middle domain CpPa04_RS07095 PF00953 Glycosyl transferase family 4 CpPa04_RS07095 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CpPa04_RS07100 PF01225 Mur ligase family, catalytic domain CpPa04_RS07100 PF02875 Mur ligase family, glutamate ligase domain CpPa04_RS07100 PF08245 Mur ligase middle domain CpPa04_RS07105 PF02875 Mur ligase family, glutamate ligase domain CpPa04_RS07105 PF08245 Mur ligase middle domain CpPa04_RS07110 PF00905 Penicillin binding protein transpeptidase domain CpPa04_RS07110 PF03717 Penicillin-binding Protein dimerisation domain CpPa04_RS07120 PF01795 MraW methylase family CpPa04_RS07125 PF02381 MraZ protein CpPa04_RS07135 PF11239 CpPa04_RS07135 CpPa04_RS07145 PF13508 Acetyltransferase (GNAT) domain CpPa04_RS07150 PF02219 Methylenetetrahydrofolate reductase CpPa04_RS07155 PF00348 Polyprenyl synthetase CpPa04_RS07175 PF01474 Class-II DAHP synthetase family CpPa04_RS07180 PF16473 CpPa04_RS07180 CpPa04_RS07185 PF01757 CpPa04_RS07185 CpPa04_RS07190 PF01553 Acyltransferase CpPa04_RS07195 PF00480 ROK family CpPa04_RS07200 PF00534 Glycosyl transferases group 1 CpPa04_RS07200 PF13439 Glycosyltransferase Family 4 CpPa04_RS07205 PF00877 NlpC/P60 family CpPa04_RS07210 PF00877 NlpC/P60 family CpPa04_RS07215 PF13631 Cytochrome b(N-terminal)/b6/petB CpPa04_RS07220 PF00355 Rieske [2Fe-2S] domain CpPa04_RS07225 PF00034 Cytochrome c CpPa04_RS07225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CpPa04_RS07230 PF00510 Cytochrome c oxidase subunit III CpPa04_RS07235 PF12270 CpPa04_RS07235 CpPa04_RS07240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CpPa04_RS07245 PF00733 Asparagine synthase CpPa04_RS07245 PF13537 Glutamine amidotransferase domain CpPa04_RS07250 PF01521 Iron-sulphur cluster biosynthesis CpPa04_RS07255 PF11241 CpPa04_RS07255 CpPa04_RS07260 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CpPa04_RS07265 PF02277 Phosphoribosyltransferase CpPa04_RS07270 PF02654 CpPa04_RS07270 CpPa04_RS07275 PF01063 Aminotransferase class IV CpPa04_RS07280 PF00883 Cytosol aminopeptidase family, catalytic domain CpPa04_RS07280 PF02789 Cytosol aminopeptidase family, N-terminal domain CpPa04_RS07290 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CpPa04_RS07290 PF00364 Biotin-requiring enzyme CpPa04_RS07290 PF02817 e3 binding domain CpPa04_RS07295 PF02347 Glycine cleavage system P-protein CpPa04_RS07300 PF01571 Aminomethyltransferase folate-binding domain CpPa04_RS07300 PF08669 Glycine cleavage T-protein C-terminal barrel domain CpPa04_RS07305 PF01597 Glycine cleavage H-protein CpPa04_RS07315 PF03099 Biotin/lipoate A/B protein ligase family CpPa04_RS07320 PF04055 Radical SAM superfamily CpPa04_RS07320 PF16881 CpPa04_RS07320 CpPa04_RS07325 PF13829 CpPa04_RS07325 CpPa04_RS07330 PF06271 CpPa04_RS07330 CpPa04_RS07335 PF00120 Glutamine synthetase, catalytic domain CpPa04_RS07335 PF03951 Glutamine synthetase, beta-Grasp domain CpPa04_RS07350 PF06305 CpPa04_RS07350 CpPa04_RS07355 PF10991 Protein of unknown function (DUF2815) CpPa04_RS07375 PF08281 Sigma-70, region 4 CpPa04_RS07395 PF13443 Cro/C1-type HTH DNA-binding domain CpPa04_RS07400 PF01555 DNA methylase CpPa04_RS07410 PF13175 AAA ATPase domain CpPa04_RS07415 PF00580 UvrD/REP helicase N-terminal domain CpPa04_RS07420 PF02384 N-6 DNA Methylase CpPa04_RS07425 PF02384 N-6 DNA Methylase CpPa04_RS07435 PF12161 HsdM N-terminal domain CpPa04_RS07445 PF00005 ABC transporter CpPa04_RS07450 PF02687 CpPa04_RS07450 CpPa04_RS07455 PF04213 CpPa04_RS07455 CpPa04_RS07460 PF04213 CpPa04_RS07460 CpPa04_RS07465 PF13303 CpPa04_RS07465 CpPa04_RS07470 PF00478 IMP dehydrogenase / GMP reductase domain CpPa04_RS07470 PF00571 CBS domain CpPa04_RS07475 PF05532 CsbD-like CpPa04_RS07480 PF03553 CpPa04_RS07480 CpPa04_RS07480 PF13726 CpPa04_RS07480 CpPa04_RS07485 PF00293 NUDIX domain CpPa04_RS07490 PF00291 Pyridoxal-phosphate dependent enzyme CpPa04_RS07490 PF14821 Threonine synthase N terminus CpPa04_RS07505 PF01126 Heme oxygenase CpPa04_RS07510 PF03710 Glutamate-ammonia ligase adenylyltransferase CpPa04_RS07510 PF08335 GlnD PII-uridylyltransferase CpPa04_RS07515 PF00120 Glutamine synthetase, catalytic domain CpPa04_RS07515 PF03951 Glutamine synthetase, beta-Grasp domain CpPa04_RS07525 PF01928 CYTH domain CpPa04_RS07525 PF05235 CHAD domain CpPa04_RS07535 PF10509 Galactokinase galactose-binding signature CpPa04_RS07540 PF00773 RNB domain CpPa04_RS07550 PF00300 Histidine phosphatase superfamily (branch 1) CpPa04_RS07550 PF13456 Reverse transcriptase-like CpPa04_RS07555 PF02591 Putative zinc ribbon domain CpPa04_RS07560 PF01784 NIF3 (NGG1p interacting factor 3) CpPa04_RS07565 PF00155 Aminotransferase class I and II CpPa04_RS07575 PF01451 Low molecular weight phosphotyrosine protein phosphatase CpPa04_RS07580 PF02104 CpPa04_RS07580 CpPa04_RS07585 PF03186 CpPa04_RS07585 CpPa04_RS07595 PF11253 CpPa04_RS07595 CpPa04_RS07600 PF00456 Transketolase, thiamine diphosphate binding domain CpPa04_RS07605 PF12697 Alpha/beta hydrolase family CpPa04_RS07610 PF00550 Phosphopantetheine attachment site CpPa04_RS07615 PF13242 HAD-hyrolase-like CpPa04_RS07615 PF13344 Haloacid dehalogenase-like hydrolase CpPa04_RS07625 PF00144 Beta-lactamase CpPa04_RS07630 PF03458 CpPa04_RS07630 CpPa04_RS07655 PF01807 CHC2 zinc finger CpPa04_RS07655 PF08275 DNA primase catalytic core, N-terminal domain CpPa04_RS07655 PF08278 DNA primase DnaG DnaB-binding CpPa04_RS07655 PF10410 DnaB-helicase binding domain of primase CpPa04_RS07655 PF13662 Toprim domain CpPa04_RS07660 PF01380 SIS domain CpPa04_RS07660 PF13522 Glutamine amidotransferase domain CpPa04_RS07665 PF00545 ribonuclease CpPa04_RS07675 PF01966 HD domain CpPa04_RS07675 PF13286 Phosphohydrolase-associated domain CpPa04_RS07680 PF02698 DUF218 domain CpPa04_RS07685 PF04536 TLP18 CpPa04_RS07700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpPa04_RS07700 PF03129 Anticodon binding domain CpPa04_RS07710 PF01022 Bacterial regulatory protein, arsR family CpPa04_RS07715 PF01475 Ferric uptake regulator family CpPa04_RS07720 PF01988 CpPa04_RS07720 CpPa04_RS07725 PF01255 Putative undecaprenyl diphosphate synthase CpPa04_RS07730 PF02565 Recombination protein O C terminal CpPa04_RS07730 PF11967 Recombination protein O N terminal CpPa04_RS07735 PF01926 50S ribosome-binding GTPase CpPa04_RS07735 PF07650 KH domain CpPa04_RS07740 PF08543 Phosphomethylpyrimidine kinase CpPa04_RS07745 PF00571 CBS domain CpPa04_RS07745 PF01595 CpPa04_RS07745 CpPa04_RS07745 PF03471 Transporter associated domain CpPa04_RS07750 PF02130 Uncharacterized protein family UPF0054 CpPa04_RS07755 PF02562 PhoH-like protein CpPa04_RS07760 PF04452 RNA methyltransferase CpPa04_RS07765 PF00226 DnaJ domain CpPa04_RS07765 PF00684 DnaJ central domain CpPa04_RS07765 PF01556 DnaJ C terminal domain CpPa04_RS07770 PF01628 HrcA protein C terminal domain CpPa04_RS07770 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CpPa04_RS07775 PF04055 Radical SAM superfamily CpPa04_RS07775 PF06969 HemN C-terminal domain CpPa04_RS07785 PF00501 AMP-binding enzyme CpPa04_RS07790 PF02446 4-alpha-glucanotransferase CpPa04_RS07800 PF01432 Peptidase family M3 CpPa04_RS07805 PF00135 Carboxylesterase family CpPa04_RS07810 PF00293 NUDIX domain CpPa04_RS07820 PF12079 CpPa04_RS07820 CpPa04_RS07830 PF00005 ABC transporter CpPa04_RS07830 PF00664 ABC transporter transmembrane region CpPa04_RS07835 PF05525 CpPa04_RS07835 CpPa04_RS07840 PF00296 Luciferase-like monooxygenase CpPa04_RS07845 PF01844 HNH endonuclease CpPa04_RS07850 PF02028 BCCT family transporter CpPa04_RS07860 PF03547 CpPa04_RS07860 CpPa04_RS07865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS07870 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS07875 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS07880 PF00005 ABC transporter CpPa04_RS07880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpPa04_RS07885 PF00561 alpha/beta hydrolase fold CpPa04_RS07890 PF01168 Alanine racemase, N-terminal domain CpPa04_RS07895 PF01206 Sulfurtransferase TusA CpPa04_RS07895 PF04143 CpPa04_RS07895 CpPa04_RS07905 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS07910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS07915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS07920 PF07690 Major Facilitator Superfamily CpPa04_RS07925 PF00005 ABC transporter CpPa04_RS07930 PF00005 ABC transporter CpPa04_RS07940 PF00009 Elongation factor Tu GTP binding domain CpPa04_RS07940 PF00679 Elongation factor G C-terminus CpPa04_RS07940 PF06421 GTP-binding protein LepA C-terminus CpPa04_RS07945 PF02452 PemK-like protein CpPa04_RS07950 PF01649 Ribosomal protein S20 CpPa04_RS07955 PF01810 CpPa04_RS07955 CpPa04_RS07960 PF12796 Ankyrin repeats (3 copies) CpPa04_RS07965 PF06144 DNA polymerase III, delta subunit CpPa04_RS07970 PF03772 CpPa04_RS07970 CpPa04_RS07980 PF02645 Uncharacterised protein, DegV family COG1307 CpPa04_RS07985 PF00300 Histidine phosphatase superfamily (branch 1) CpPa04_RS07990 PF02410 Oligomerisation domain CpPa04_RS07995 PF01467 Cytidylyltransferase CpPa04_RS08000 PF00171 Aldehyde dehydrogenase family CpPa04_RS08005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CpPa04_RS08010 PF04304 CpPa04_RS08010 CpPa04_RS08015 PF02080 TrkA-C domain CpPa04_RS08015 PF06826 CpPa04_RS08015 CpPa04_RS08020 PF00696 Amino acid kinase family CpPa04_RS08020 PF01472 PUA domain CpPa04_RS08025 PF01018 GTP1/OBG CpPa04_RS08025 PF01926 50S ribosome-binding GTPase CpPa04_RS08025 PF09269 Domain of unknown function (DUF1967) CpPa04_RS08030 PF01016 Ribosomal L27 protein CpPa04_RS08035 PF00829 Ribosomal prokaryotic L21 protein CpPa04_RS08040 PF04760 Translation initiation factor IF-2, N-terminal region CpPa04_RS08040 PF10150 Ribonuclease E/G family CpPa04_RS08050 PF00334 Nucleoside diphosphate kinase CpPa04_RS08055 PF02423 Ornithine cyclodeaminase/mu-crystallin family CpPa04_RS08060 PF14017 CpPa04_RS08060 CpPa04_RS08065 PF02875 Mur ligase family, glutamate ligase domain CpPa04_RS08065 PF08245 Mur ligase middle domain CpPa04_RS08070 PF00133 tRNA synthetases class I (I, L, M and V) CpPa04_RS08070 PF08264 Anticodon-binding domain of tRNA CpPa04_RS08070 PF10458 Valyl tRNA synthetase tRNA binding arm CpPa04_RS08075 PF00056 lactate/malate dehydrogenase, NAD binding domain CpPa04_RS08075 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CpPa04_RS08080 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS08085 PF06689 ClpX C4-type zinc finger CpPa04_RS08085 PF07724 AAA domain (Cdc48 subfamily) CpPa04_RS08085 PF10431 C-terminal, D2-small domain, of ClpB protein CpPa04_RS08090 PF00117 Glutamine amidotransferase class-I CpPa04_RS08090 PF00425 chorismate binding enzyme CpPa04_RS08090 PF01063 Aminotransferase class IV CpPa04_RS08095 PF00574 Clp protease CpPa04_RS08100 PF00574 Clp protease CpPa04_RS08105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CpPa04_RS08105 PF05697 Bacterial trigger factor protein (TF) CpPa04_RS08105 PF05698 Bacterial trigger factor protein (TF) C-terminus CpPa04_RS08130 PF02678 Pirin CpPa04_RS08130 PF05726 Pirin C-terminal cupin domain CpPa04_RS08135 PF02502 Ribose/Galactose Isomerase CpPa04_RS08140 PF01323 DSBA-like thioredoxin domain CpPa04_RS08145 PF01433 Peptidase family M1 CpPa04_RS08145 PF11838 ERAP1-like C-terminal domain CpPa04_RS08150 PF00924 Mechanosensitive ion channel CpPa04_RS08155 PF01152 Bacterial-like globin CpPa04_RS08160 PF04657 CpPa04_RS08160 CpPa04_RS08170 PF13279 Thioesterase-like superfamily CpPa04_RS08175 PF00005 ABC transporter CpPa04_RS08175 PF12848 ABC transporter CpPa04_RS08180 PF00436 Single-strand binding protein family CpPa04_RS08190 PF02624 YcaO-like family CpPa04_RS08195 PF00881 Nitroreductase family CpPa04_RS08200 PF04738 CpPa04_RS08200 CpPa04_RS08205 PF14028 CpPa04_RS08205 CpPa04_RS08220 PF02624 YcaO-like family CpPa04_RS08230 PF00005 ABC transporter CpPa04_RS08235 PF05425 CpPa04_RS08235 CpPa04_RS08235 PF09678 CpPa04_RS08235 CpPa04_RS08240 PF02554 CpPa04_RS08240 CpPa04_RS08240 PF13722 CpPa04_RS08240 CpPa04_RS08245 PF04328 CpPa04_RS08245 CpPa04_RS08255 PF00082 Subtilase family CpPa04_RS08260 PF00107 Zinc-binding dehydrogenase CpPa04_RS08260 PF08240 Alcohol dehydrogenase GroES-like domain CpPa04_RS08265 PF00106 short chain dehydrogenase CpPa04_RS08270 PF00929 Exonuclease CpPa04_RS08280 PF00701 Dihydrodipicolinate synthetase family CpPa04_RS08285 PF03734 L,D-transpeptidase catalytic domain CpPa04_RS08295 PF00107 Zinc-binding dehydrogenase CpPa04_RS08295 PF16884 CpPa04_RS08295 CpPa04_RS08300 PF00857 Isochorismatase family CpPa04_RS08305 PF03992 Antibiotic biosynthesis monooxygenase CpPa04_RS08310 PF12277 CpPa04_RS08310 CpPa04_RS08315 PF00578 AhpC/TSA family CpPa04_RS08320 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS08325 PF01648 4'-phosphopantetheinyl transferase superfamily CpPa04_RS08330 PF00109 Beta-ketoacyl synthase, N-terminal domain CpPa04_RS08330 PF00698 Acyl transferase domain CpPa04_RS08330 PF01575 MaoC like domain CpPa04_RS08330 PF02801 Beta-ketoacyl synthase, C-terminal domain CpPa04_RS08330 PF08354 Domain of unknown function (DUF1729) CpPa04_RS08345 PF00072 Response regulator receiver domain CpPa04_RS08345 PF00196 Bacterial regulatory proteins, luxR family CpPa04_RS08350 PF04235 CpPa04_RS08350 CpPa04_RS08380 PF12823 CpPa04_RS08380 CpPa04_RS08385 PF01725 Ham1 family CpPa04_RS08390 PF01138 3' exoribonuclease family, domain 1 CpPa04_RS08390 PF03725 3' exoribonuclease family, domain 2 CpPa04_RS08395 PF12706 Beta-lactamase superfamily domain CpPa04_RS08400 PF01177 Asp/Glu/Hydantoin racemase CpPa04_RS08405 PF01694 Rhomboid family CpPa04_RS08410 PF09438 CpPa04_RS08410 CpPa04_RS08415 PF02617 ATP-dependent Clp protease adaptor protein ClpS CpPa04_RS08420 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CpPa04_RS08425 PF00270 DEAD/DEAH box helicase CpPa04_RS08425 PF13307 Helicase C-terminal domain CpPa04_RS08430 PF13302 Acetyltransferase (GNAT) domain CpPa04_RS08435 PF12710 haloacid dehalogenase-like hydrolase CpPa04_RS08435 PF13740 ACT domain CpPa04_RS08440 PF13551 Winged helix-turn helix CpPa04_RS08455 PF00115 Cytochrome C and Quinol oxidase polypeptide I CpPa04_RS08465 PF00268 Ribonucleotide reductase, small chain CpPa04_RS08470 PF00210 Ferritin-like domain CpPa04_RS08475 PF00317 Ribonucleotide reductase, all-alpha domain CpPa04_RS08475 PF02867 Ribonucleotide reductase, barrel domain CpPa04_RS08475 PF08343 Ribonucleotide reductase N-terminal CpPa04_RS08480 PF07972 NrdI Flavodoxin like CpPa04_RS08485 PF00462 Glutaredoxin CpPa04_RS08490 PF00444 Ribosomal protein L36 CpPa04_RS08495 PF02540 NAD synthase CpPa04_RS08500 PF12900 Pyridoxamine 5'-phosphate oxidase CpPa04_RS08510 PF01022 Bacterial regulatory protein, arsR family CpPa04_RS08555 PF13462 Thioredoxin CpPa04_RS08560 PF07291 CpPa04_RS08560 CpPa04_RS08565 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CpPa04_RS08565 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CpPa04_RS08565 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CpPa04_RS08565 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CpPa04_RS08570 PF02537 CpPa04_RS08570 CpPa04_RS08575 PF02537 CpPa04_RS08575 CpPa04_RS08580 PF02687 CpPa04_RS08580 CpPa04_RS08580 PF12704 MacB-like periplasmic core domain CpPa04_RS08585 PF00005 ABC transporter CpPa04_RS08610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CpPa04_RS08615 PF01923 Cobalamin adenosyltransferase CpPa04_RS08620 PF00196 Bacterial regulatory proteins, luxR family CpPa04_RS08620 PF13185 GAF domain CpPa04_RS08630 PF00291 Pyridoxal-phosphate dependent enzyme CpPa04_RS08635 PF00132 Bacterial transferase hexapeptide (six repeats) CpPa04_RS08640 PF14542 GCN5-related N-acetyl-transferase CpPa04_RS08655 PF00465 Iron-containing alcohol dehydrogenase CpPa04_RS08675 PF01654 CpPa04_RS08675 CpPa04_RS08680 PF02322 CpPa04_RS08680 CpPa04_RS08685 PF00005 ABC transporter CpPa04_RS08685 PF00664 ABC transporter transmembrane region CpPa04_RS08690 PF00005 ABC transporter CpPa04_RS08690 PF00664 ABC transporter transmembrane region CpPa04_RS08695 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CpPa04_RS08695 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CpPa04_RS08700 PF01207 Dihydrouridine synthase (Dus) CpPa04_RS08705 PF01895 PhoU domain CpPa04_RS08715 PF00005 ABC transporter CpPa04_RS08725 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS08730 PF12849 PBP superfamily domain CpPa04_RS08735 PF00583 Acetyltransferase (GNAT) family CpPa04_RS08740 PF11209 CpPa04_RS08740 CpPa04_RS08745 PF00781 Diacylglycerol kinase catalytic domain CpPa04_RS08750 PF08768 Domain of unknown function (DUF1794) CpPa04_RS08755 PF01063 Aminotransferase class IV CpPa04_RS08760 PF01571 Aminomethyltransferase folate-binding domain CpPa04_RS08760 PF08669 Glycine cleavage T-protein C-terminal barrel domain CpPa04_RS08765 PF11273 CpPa04_RS08765 CpPa04_RS08770 PF00586 AIR synthase related protein, N-terminal domain CpPa04_RS08770 PF02769 AIR synthase related protein, C-terminal domain CpPa04_RS08775 PF00156 Phosphoribosyl transferase domain CpPa04_RS08775 PF13537 Glutamine amidotransferase domain CpPa04_RS08785 PF07972 NrdI Flavodoxin like CpPa04_RS08790 PF00268 Ribonucleotide reductase, small chain CpPa04_RS08795 PF03006 CpPa04_RS08795 CpPa04_RS08800 PF00586 AIR synthase related protein, N-terminal domain CpPa04_RS08800 PF02769 AIR synthase related protein, C-terminal domain CpPa04_RS08805 PF13507 CobB/CobQ-like glutamine amidotransferase domain CpPa04_RS08810 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CpPa04_RS08815 PF00255 Glutathione peroxidase CpPa04_RS08820 PF00326 Prolyl oligopeptidase family CpPa04_RS08820 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CpPa04_RS08830 PF01259 SAICAR synthetase CpPa04_RS08835 PF00206 Lyase CpPa04_RS08835 PF10397 Adenylosuccinate lyase C-terminus CpPa04_RS08840 PF02254 TrkA-N domain CpPa04_RS08845 PF02386 Cation transport protein CpPa04_RS08850 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CpPa04_RS08850 PF02843 Phosphoribosylglycinamide synthetase, C domain CpPa04_RS08850 PF02844 Phosphoribosylglycinamide synthetase, N domain CpPa04_RS08855 PF01230 HIT domain CpPa04_RS08860 PF12146 Putative lysophospholipase CpPa04_RS08865 PF00512 His Kinase A (phospho-acceptor) domain CpPa04_RS08865 PF00672 HAMP domain CpPa04_RS08865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpPa04_RS08870 PF00072 Response regulator receiver domain CpPa04_RS08870 PF00486 Transcriptional regulatory protein, C terminal CpPa04_RS08880 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS08885 PF00756 Putative esterase CpPa04_RS08895 PF04480 Protein of unknown function (DUF559) CpPa04_RS08895 PF13338 CpPa04_RS08895 CpPa04_RS08900 PF00205 Thiamine pyrophosphate enzyme, central domain CpPa04_RS08900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CpPa04_RS08900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CpPa04_RS08910 PF06738 CpPa04_RS08910 CpPa04_RS08910 PF12821 CpPa04_RS08910 CpPa04_RS08920 PF06738 CpPa04_RS08920 CpPa04_RS08920 PF12821 CpPa04_RS08920 CpPa04_RS08930 PF00982 Glycosyltransferase family 20 CpPa04_RS08940 PF02358 Trehalose-phosphatase CpPa04_RS08945 PF00356 Bacterial regulatory proteins, lacI family CpPa04_RS08945 PF13377 Periplasmic binding protein-like domain CpPa04_RS08950 PF02230 Phospholipase/Carboxylesterase CpPa04_RS08955 PF00588 SpoU rRNA Methylase family CpPa04_RS08955 PF08032 RNA 2'-O ribose methyltransferase substrate binding CpPa04_RS08960 PF01406 tRNA synthetases class I (C) catalytic domain CpPa04_RS08960 PF09190 DALR domain CpPa04_RS08965 PF02542 YgbB family CpPa04_RS08970 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CpPa04_RS08975 PF02559 CarD-like/TRCF domain CpPa04_RS08995 PF13481 AAA domain CpPa04_RS08995 PF13541 Subunit ChlI of Mg-chelatase CpPa04_RS09005 PF00484 Carbonic anhydrase CpPa04_RS09010 PF00633 Helix-hairpin-helix motif CpPa04_RS09010 PF00730 HhH-GPD superfamily base excision DNA repair protein CpPa04_RS09015 PF06738 CpPa04_RS09015 CpPa04_RS09015 PF12821 CpPa04_RS09015 CpPa04_RS09020 PF14020 CpPa04_RS09020 CpPa04_RS09025 PF00004 ATPase family associated with various cellular activities (AAA) CpPa04_RS09025 PF02151 UvrB/uvrC motif CpPa04_RS09025 PF02861 Clp amino terminal domain CpPa04_RS09025 PF07724 AAA domain (Cdc48 subfamily) CpPa04_RS09025 PF10431 C-terminal, D2-small domain, of ClpB protein CpPa04_RS09035 PF07690 Major Facilitator Superfamily CpPa04_RS09040 PF01156 Inosine-uridine preferring nucleoside hydrolase CpPa04_RS09045 PF12146 Putative lysophospholipase CpPa04_RS09050 PF02517 CAAX protease self-immunity CpPa04_RS09055 PF00152 tRNA synthetases class II (D, K and N) CpPa04_RS09055 PF01336 OB-fold nucleic acid binding domain CpPa04_RS09060 PF01145 SPFH domain / Band 7 family CpPa04_RS09070 PF00375 Sodium:dicarboxylate symporter family CpPa04_RS09075 PF00171 Aldehyde dehydrogenase family CpPa04_RS09080 PF02028 BCCT family transporter CpPa04_RS09085 PF00732 GMC oxidoreductase CpPa04_RS09085 PF05199 GMC oxidoreductase CpPa04_RS09090 PF02569 Pantoate-beta-alanine ligase CpPa04_RS09105 PF11377 CpPa04_RS09105 CpPa04_RS09110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CpPa04_RS09115 PF02152 Dihydroneopterin aldolase CpPa04_RS09120 PF00809 Pterin binding enzyme CpPa04_RS09125 PF01227 GTP cyclohydrolase I CpPa04_RS09130 PF00004 ATPase family associated with various cellular activities (AAA) CpPa04_RS09130 PF01434 Peptidase family M41 CpPa04_RS09135 PF00156 Phosphoribosyl transferase domain CpPa04_RS09140 PF01171 PP-loop family CpPa04_RS09140 PF09179 TilS substrate binding domain CpPa04_RS09145 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CpPa04_RS09150 PF00719 Inorganic pyrophosphatase CpPa04_RS09155 PF00581 Rhodanese-like domain CpPa04_RS09160 PF00375 Sodium:dicarboxylate symporter family CpPa04_RS09175 PF13463 Winged helix DNA-binding domain CpPa04_RS09180 PF00132 Bacterial transferase hexapeptide (six repeats) CpPa04_RS09180 PF00501 AMP-binding enzyme CpPa04_RS09180 PF00550 Phosphopantetheine attachment site CpPa04_RS09185 PF03976 Polyphosphate kinase 2 (PPK2) CpPa04_RS09200 PF00118 TCP-1/cpn60 chaperonin family CpPa04_RS09205 PF01546 Peptidase family M20/M25/M40 CpPa04_RS09205 PF07687 Peptidase dimerisation domain CpPa04_RS09230 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CpPa04_RS09230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CpPa04_RS09230 PF04039 CpPa04_RS09230 CpPa04_RS09230 PF13244 CpPa04_RS09230 CpPa04_RS09235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CpPa04_RS09240 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CpPa04_RS09245 PF01899 CpPa04_RS09245 CpPa04_RS09250 PF04066 CpPa04_RS09250 CpPa04_RS09255 PF03334 CpPa04_RS09255 CpPa04_RS09260 PF09594 CpPa04_RS09260 CpPa04_RS09265 PF04107 Glutamate-cysteine ligase family 2(GCS2) CpPa04_RS09270 PF13399 LytR cell envelope-related transcriptional attenuator CpPa04_RS09275 PF11662 CpPa04_RS09275 CpPa04_RS09280 PF01327 Polypeptide deformylase CpPa04_RS09285 PF00583 Acetyltransferase (GNAT) family CpPa04_RS09290 PF03372 Endonuclease/Exonuclease/phosphatase family CpPa04_RS09295 PF13091 PLD-like domain CpPa04_RS09295 PF13396 CpPa04_RS09295 CpPa04_RS09305 PF00005 ABC transporter CpPa04_RS09310 PF00293 NUDIX domain CpPa04_RS09315 PF12729 CpPa04_RS09315 CpPa04_RS09320 PF00497 Bacterial extracellular solute-binding proteins, family 3 CpPa04_RS09325 PF00069 Protein kinase domain CpPa04_RS09325 PF16918 CpPa04_RS09325 CpPa04_RS09330 PF00871 Acetokinase family CpPa04_RS09335 PF01515 Phosphate acetyl/butaryl transferase CpPa04_RS09340 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpPa04_RS09345 PF13673 Acetyltransferase (GNAT) domain CpPa04_RS09355 PF02222 ATP-grasp domain CpPa04_RS09365 PF02600 Disulfide bond formation protein DsbB CpPa04_RS09385 PF00578 AhpC/TSA family CpPa04_RS09390 PF01578 CpPa04_RS09390 CpPa04_RS09395 PF05140 CpPa04_RS09395 CpPa04_RS09405 PF02335 Cytochrome c552 CpPa04_RS09410 PF03264 NapC/NirT cytochrome c family, N-terminal region CpPa04_RS09415 PF00709 Adenylosuccinate synthetase CpPa04_RS09425 PF13515 CpPa04_RS09425 CpPa04_RS09445 PF00005 ABC transporter CpPa04_RS09450 PF13396 CpPa04_RS09450 CpPa04_RS09460 PF03551 Transcriptional regulator PadR-like family CpPa04_RS09465 PF05738 Cna protein B-type domain CpPa04_RS09470 PF01116 Fructose-bisphosphate aldolase class-II CpPa04_RS09475 PF03663 Glycosyl hydrolase family 76 CpPa04_RS09480 PF00588 SpoU rRNA Methylase family CpPa04_RS09485 PF00156 Phosphoribosyl transferase domain CpPa04_RS09495 PF00581 Rhodanese-like domain CpPa04_RS09520 PF04203 Sortase family CpPa04_RS09525 PF05738 Cna protein B-type domain CpPa04_RS09530 PF04203 Sortase family CpPa04_RS09535 PF00004 ATPase family associated with various cellular activities (AAA) CpPa04_RS09535 PF02861 Clp amino terminal domain CpPa04_RS09535 PF07724 AAA domain (Cdc48 subfamily) CpPa04_RS09535 PF10431 C-terminal, D2-small domain, of ClpB protein CpPa04_RS09540 PF00005 ABC transporter CpPa04_RS09590 PF02687 CpPa04_RS09590 CpPa04_RS09590 PF12704 MacB-like periplasmic core domain CpPa04_RS09595 PF00005 ABC transporter CpPa04_RS09600 PF13437 HlyD family secretion protein CpPa04_RS09605 PF00795 Carbon-nitrogen hydrolase CpPa04_RS09615 PF06259 Alpha/beta hydrolase CpPa04_RS09620 PF00107 Zinc-binding dehydrogenase CpPa04_RS09620 PF08240 Alcohol dehydrogenase GroES-like domain CpPa04_RS09640 PF13411 MerR HTH family regulatory protein CpPa04_RS09645 PF00226 DnaJ domain CpPa04_RS09645 PF00684 DnaJ central domain CpPa04_RS09645 PF01556 DnaJ C terminal domain CpPa04_RS09650 PF01025 GrpE CpPa04_RS09655 PF00012 Hsp70 protein CpPa04_RS09670 PF04203 Sortase family CpPa04_RS09675 PF01594 CpPa04_RS09675 CpPa04_RS09680 PF00005 ABC transporter CpPa04_RS09700 PF01384 CpPa04_RS09700 CpPa04_RS09710 PF02754 CpPa04_RS09710 CpPa04_RS09710 PF13237 4Fe-4S dicluster domain CpPa04_RS09715 PF08044 CpPa04_RS09715 CpPa04_RS09720 PF12840 Helix-turn-helix domain CpPa04_RS09725 PF00005 ABC transporter CpPa04_RS09730 PF01032 FecCD transport family CpPa04_RS09735 PF01497 Periplasmic binding protein CpPa04_RS09740 PF01774 UreD urease accessory protein CpPa04_RS09745 PF02492 CobW/HypB/UreG, nucleotide-binding domain CpPa04_RS09750 PF01730 UreF CpPa04_RS09755 PF02814 UreE urease accessory protein, N-terminal domain CpPa04_RS09755 PF05194 UreE urease accessory protein, C-terminal domain CpPa04_RS09760 PF00449 Urease alpha-subunit, N-terminal domain CpPa04_RS09760 PF01979 Amidohydrolase family CpPa04_RS09765 PF00699 Urease beta subunit CpPa04_RS09770 PF00547 Urease, gamma subunit CpPa04_RS09775 PF00892 EamA-like transporter family CpPa04_RS09785 PF00155 Aminotransferase class I and II CpPa04_RS09790 PF07907 CpPa04_RS09790 CpPa04_RS09795 PF00152 tRNA synthetases class II (D, K and N) CpPa04_RS09795 PF01336 OB-fold nucleic acid binding domain CpPa04_RS09795 PF09924 Uncharacterized conserved protein (DUF2156) CpPa04_RS09795 PF16995 CpPa04_RS09795 CpPa04_RS09800 PF00561 alpha/beta hydrolase fold CpPa04_RS09805 PF06197 CpPa04_RS09805 CpPa04_RS09810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CpPa04_RS09810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CpPa04_RS09810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CpPa04_RS09815 PF00692 dUTPase CpPa04_RS09825 PF00171 Aldehyde dehydrogenase family CpPa04_RS09830 PF04294 CpPa04_RS09830 CpPa04_RS09830 PF12229 Putative peptidoglycan binding domain CpPa04_RS09835 PF00933 Glycosyl hydrolase family 3 N terminal domain CpPa04_RS09840 PF11021 CpPa04_RS09840 CpPa04_RS09845 PF11847 CpPa04_RS09845 CpPa04_RS09850 PF01757 CpPa04_RS09850 CpPa04_RS09855 PF11271 CpPa04_RS09855 CpPa04_RS09865 PF00534 Glycosyl transferases group 1 CpPa04_RS09865 PF13439 Glycosyltransferase Family 4 CpPa04_RS09870 PF08241 Methyltransferase domain CpPa04_RS09875 PF00821 Phosphoenolpyruvate carboxykinase CpPa04_RS09880 PF02390 Putative methyltransferase CpPa04_RS09885 PF01936 NYN domain CpPa04_RS09890 PF03176 MMPL family CpPa04_RS09895 PF03706 CpPa04_RS09895 CpPa04_RS09900 PF11255 CpPa04_RS09900 CpPa04_RS09910 PF09335 CpPa04_RS09910 CpPa04_RS09915 PF01039 Carboxyl transferase domain CpPa04_RS09920 PF00109 Beta-ketoacyl synthase, N-terminal domain CpPa04_RS09920 PF00550 Phosphopantetheine attachment site CpPa04_RS09920 PF00698 Acyl transferase domain CpPa04_RS09920 PF00975 Thioesterase domain CpPa04_RS09920 PF02801 Beta-ketoacyl synthase, C-terminal domain CpPa04_RS09920 PF16197 CpPa04_RS09920 CpPa04_RS09925 PF00501 AMP-binding enzyme CpPa04_RS09930 PF01083 Cutinase CpPa04_RS09945 PF09594 CpPa04_RS09945 CpPa04_RS09950 PF00756 Putative esterase CpPa04_RS09965 PF13641 Glycosyltransferase like family 2 CpPa04_RS09970 PF17173 CpPa04_RS09970 CpPa04_RS09975 PF01569 PAP2 superfamily CpPa04_RS09985 PF03009 Glycerophosphoryl diester phosphodiesterase family CpPa04_RS09990 PF07690 Major Facilitator Superfamily CpPa04_RS09995 PF03275 UDP-galactopyranose mutase CpPa04_RS09995 PF13450 NAD(P)-binding Rossmann-like domain CpPa04_RS10000 PF00005 ABC transporter CpPa04_RS10005 PF01032 FecCD transport family CpPa04_RS10010 PF01497 Periplasmic binding protein CpPa04_RS10015 PF01510 N-acetylmuramoyl-L-alanine amidase CpPa04_RS10015 PF08310 CpPa04_RS10015 CpPa04_RS10020 PF08282 haloacid dehalogenase-like hydrolase CpPa04_RS10025 PF01553 Acyltransferase CpPa04_RS10030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CpPa04_RS10030 PF02403 Seryl-tRNA synthetase N-terminal domain CpPa04_RS10035 PF00392 Bacterial regulatory proteins, gntR family CpPa04_RS10035 PF07702 UTRA domain CpPa04_RS10040 PF13845 CpPa04_RS10040 CpPa04_RS10045 PF06262 Possibl zinc metallo-peptidase CpPa04_RS10050 PF00300 Histidine phosphatase superfamily (branch 1) CpPa04_RS10060 PF01425 Amidase CpPa04_RS10065 PF02517 CAAX protease self-immunity CpPa04_RS10070 PF03816 Cell envelope-related transcriptional attenuator domain CpPa04_RS10080 PF04213 CpPa04_RS10080 CpPa04_RS10095 PF03009 Glycerophosphoryl diester phosphodiesterase family CpPa04_RS10100 PF01773 Na+ dependent nucleoside transporter N-terminus CpPa04_RS10100 PF07662 Na+ dependent nucleoside transporter C-terminus CpPa04_RS10105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CpPa04_RS10110 PF00591 Glycosyl transferase family, a/b domain CpPa04_RS10110 PF02885 Glycosyl transferase family, helical bundle domain CpPa04_RS10110 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CpPa04_RS10115 PF00056 lactate/malate dehydrogenase, NAD binding domain CpPa04_RS10115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CpPa04_RS10120 PF01625 Peptide methionine sulfoxide reductase CpPa04_RS10125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CpPa04_RS10125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CpPa04_RS10130 PF03358 NADPH-dependent FMN reductase CpPa04_RS10135 PF07690 Major Facilitator Superfamily CpPa04_RS10140 PF07751 CpPa04_RS10140 CpPa04_RS10150 PF07690 Major Facilitator Superfamily CpPa04_RS10160 PF12643 CpPa04_RS10160 CpPa04_RS10165 PF09594 CpPa04_RS10165 CpPa04_RS10170 PF13482 RNase_H superfamily CpPa04_RS10180 PF11774 Lsr2 CpPa04_RS10185 PF00072 Response regulator receiver domain CpPa04_RS10185 PF00196 Bacterial regulatory proteins, luxR family CpPa04_RS10190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CpPa04_RS10190 PF07730 Histidine kinase CpPa04_RS10195 PF09449 Domain of unknown function (DUF2020) CpPa04_RS10200 PF04203 Sortase family CpPa04_RS10205 PF02096 60Kd inner membrane protein CpPa04_RS10210 PF00440 Bacterial regulatory proteins, tetR family CpPa04_RS10215 PF02592 CpPa04_RS10215 CpPa04_RS10220 PF04226 CpPa04_RS10220 CpPa04_RS10225 PF00582 Universal stress protein family CpPa04_RS10230 PF00849 RNA pseudouridylate synthase CpPa04_RS10260 PF00005 ABC transporter CpPa04_RS10265 PF00392 Bacterial regulatory proteins, gntR family CpPa04_RS10270 PF01936 NYN domain CpPa04_RS10275 PF04012 CpPa04_RS10275 CpPa04_RS10280 PF00085 Thioredoxin CpPa04_RS10285 PF00403 Heavy-metal-associated domain CpPa04_RS10290 PF00122 E1-E2 ATPase CpPa04_RS10290 PF00403 Heavy-metal-associated domain CpPa04_RS10290 PF00702 haloacid dehalogenase-like hydrolase CpPa04_RS10295 PF00083 Sugar (and other) transporter CpPa04_RS10300 PF00772 DnaB-like helicase N terminal domain CpPa04_RS10300 PF03796 DnaB-like helicase C terminal domain CpPa04_RS10305 PF00723 Glycosyl hydrolases family 15 CpPa04_RS10315 PF01281 Ribosomal protein L9, N-terminal domain CpPa04_RS10315 PF03948 Ribosomal protein L9, C-terminal domain CpPa04_RS10320 PF00436 Single-strand binding protein family CpPa04_RS10325 PF01250 Ribosomal protein S6 CpPa04_RS10340 PF09594 CpPa04_RS10340 CpPa04_RS10355 PF01047 MarR family CpPa04_RS10360 PF00582 Universal stress protein family CpPa04_RS10365 PF00106 short chain dehydrogenase CpPa04_RS10375 PF00581 Rhodanese-like domain CpPa04_RS10375 PF12368 CpPa04_RS10375 CpPa04_RS10380 PF09335 CpPa04_RS10380 CpPa04_RS10385 PF00210 Ferritin-like domain CpPa04_RS10390 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CpPa04_RS10390 PF06827 Zinc finger found in FPG and IleRS CpPa04_RS10390 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CpPa04_RS10395 PF01256 Carbohydrate kinase CpPa04_RS10395 PF03853 YjeF-related protein N-terminus CpPa04_RS10400 PF04892 CpPa04_RS10400 CpPa04_RS10405 PF12698 ABC-2 family transporter protein CpPa04_RS10410 PF08264 Anticodon-binding domain of tRNA CpPa04_RS10410 PF09334 tRNA synthetases class I (M) CpPa04_RS10410 PF13603 Leucyl-tRNA synthetase, Domain 2 CpPa04_RS10415 PF00005 ABC transporter CpPa04_RS10420 PF02687 CpPa04_RS10420 CpPa04_RS10435 PF07730 Histidine kinase CpPa04_RS10440 PF00072 Response regulator receiver domain CpPa04_RS10440 PF00196 Bacterial regulatory proteins, luxR family CpPa04_RS10450 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CpPa04_RS10455 PF01979 Amidohydrolase family CpPa04_RS10460 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CpPa04_RS10465 PF00480 ROK family CpPa04_RS10470 PF00392 Bacterial regulatory proteins, gntR family CpPa04_RS10470 PF07729 FCD domain CpPa04_RS10475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CpPa04_RS10480 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS10485 PF00005 ABC transporter CpPa04_RS10485 PF00528 Binding-protein-dependent transport system inner membrane component CpPa04_RS10485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CpPa04_RS10490 PF00005 ABC transporter CpPa04_RS10495 PF00701 Dihydrodipicolinate synthetase family CpPa04_RS10510 PF02517 CAAX protease self-immunity CpPa04_RS10520 PF01263 Aldose 1-epimerase CpPa04_RS10530 PF08903 Domain of unknown function (DUF1846) CpPa04_RS10535 PF07411 Domain of unknown function (DUF1508) CpPa04_RS10540 PF14094 CpPa04_RS10540 CpPa04_RS10550 PF00375 Sodium:dicarboxylate symporter family CpPa04_RS10555 PF00494 Squalene/phytoene synthase CpPa04_RS10560 PF01593 Flavin containing amine oxidoreductase CpPa04_RS10570 PF00425 chorismate binding enzyme CpPa04_RS10570 PF04715 Anthranilate synthase component I, N terminal region CpPa04_RS10575 PF00117 Glutamine amidotransferase class-I CpPa04_RS10580 PF00591 Glycosyl transferase family, a/b domain CpPa04_RS10580 PF02885 Glycosyl transferase family, helical bundle domain CpPa04_RS10585 PF00218 Indole-3-glycerol phosphate synthase CpPa04_RS10585 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CpPa04_RS10595 PF00291 Pyridoxal-phosphate dependent enzyme CpPa04_RS10600 PF00290 Tryptophan synthase alpha chain CpPa04_RS10605 PF00355 Rieske [2Fe-2S] domain CpPa04_RS10610 PF13593 SBF-like CPA transporter family (DUF4137) CpPa04_RS10620 PF05437 CpPa04_RS10620 CpPa04_RS10625 PF03591 CpPa04_RS10625 CpPa04_RS10630 PF02622 Uncharacterized ACR, COG1678 CpPa04_RS10635 PF01743 Poly A polymerase head domain CpPa04_RS10635 PF01966 HD domain CpPa04_RS10635 PF12627 Probable RNA and SrmB- binding site of polymerase A CpPa04_RS10640 PF00293 NUDIX domain CpPa04_RS10650 PF03023 CpPa04_RS10650 CpPa04_RS10655 PF04542 Sigma-70 region 2 CpPa04_RS10655 PF08281 Sigma-70, region 4 CpPa04_RS10660 PF07992 Pyridine nucleotide-disulphide oxidoreductase CpPa04_RS10665 PF00085 Thioredoxin CpPa04_RS10670 PF01471 Putative peptidoglycan binding domain CpPa04_RS10670 PF01520 N-acetylmuramoyl-L-alanine amidase CpPa04_RS10680 PF02195 ParB-like nuclease domain CpPa04_RS10685 PF13614 AAA domain CpPa04_RS10690 PF02527 rRNA small subunit methyltransferase G CpPa04_RS10695 PF02096 60Kd inner membrane protein CpPa04_RS10700 PF01809 CpPa04_RS10700 CpPa04_RS10705 PF00825 Ribonuclease P CpPa04_RS10710 PF00468 Ribosomal protein L34