locus-tag class description ccrud_RS00005 PF00308 Bacterial dnaA protein ccrud_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix ccrud_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain ccrud_RS00015 PF02767 DNA polymerase III beta subunit, central domain ccrud_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain ccrud_RS00020 PF02463 RecF/RecN/SMC N terminal domain ccrud_RS00025 PF05258 Dna[CI] antecedent, DciA ccrud_RS00030 PF00204 DNA gyrase B ccrud_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus ccrud_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS00030 PF01751 Toprim domain ccrud_RS00065 PF03989 DNA gyrase C-terminal domain, beta-propeller ccrud_RS00065 PF00521 DNA gyrase/topoisomerase IV, subunit A ccrud_RS00085 PF03812 2-keto-3-deoxygluconate permease ccrud_RS00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS00090 PF03466 LysR substrate binding domain ccrud_RS00095 PF00149 Calcineurin-like phosphoesterase ccrud_RS00095 PF00565 Staphylococcal nuclease homologue ccrud_RS00095 PF00746 LPXTG cell wall anchor motif ccrud_RS00095 PF02872 5'-nucleotidase, C-terminal domain ccrud_RS00120 PF02653 Branched-chain amino acid transport system / permease component ccrud_RS00125 PF00005 ABC transporter ccrud_RS00135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ccrud_RS00145 PF06781 Cell division protein CrgA ccrud_RS00150 PF03793 PASTA domain ccrud_RS00150 PF00069 Protein kinase domain ccrud_RS00155 PF00069 Protein kinase domain ccrud_RS00160 PF00905 Penicillin binding protein transpeptidase domain ccrud_RS00165 PF01098 Cell cycle protein ccrud_RS00175 PF16697 Inner membrane component of T3SS, cytoplasmic domain ccrud_RS00180 PF00498 FHA domain ccrud_RS00180 PF12401 Protein of unknown function (DUF2662) ccrud_RS00195 PF00890 FAD binding domain ccrud_RS00200 PF07690 Major Facilitator Superfamily ccrud_RS00200 PF00083 Sugar (and other) transporter ccrud_RS00210 PF00890 FAD binding domain ccrud_RS00220 PF01614 Bacterial transcriptional regulator ccrud_RS00220 PF09339 IclR helix-turn-helix domain ccrud_RS00225 PF04542 Sigma-70 region 2 ccrud_RS00225 PF08281 Sigma-70, region 4 ccrud_RS00230 PF00665 Integrase core domain ccrud_RS00230 PF13333 Integrase core domain ccrud_RS00230 PF13276 HTH-like domain ccrud_RS00255 PF00171 Aldehyde dehydrogenase family ccrud_RS00265 PF00753 Metallo-beta-lactamase superfamily ccrud_RS00275 PF00581 Rhodanese-like domain ccrud_RS00280 PF11127 Protein of unknown function (DUF2892) ccrud_RS00280 PF00581 Rhodanese-like domain ccrud_RS00285 PF02583 Metal-sensitive transcriptional repressor ccrud_RS00310 PF01544 CorA-like Mg2+ transporter protein ccrud_RS00330 PF02562 PhoH-like protein ccrud_RS00330 PF13638 PIN domain ccrud_RS00340 PF03600 Citrate transporter ccrud_RS00345 PF17203 Single cache domain 3 ccrud_RS00345 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ccrud_RS00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS00345 PF00989 PAS fold ccrud_RS00350 PF12431 Transcriptional regulator ccrud_RS00350 PF00072 Response regulator receiver domain ccrud_RS00355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ccrud_RS00365 PF06968 Biotin and Thiamin Synthesis associated domain ccrud_RS00365 PF04055 Radical SAM superfamily ccrud_RS00390 PF01209 ubiE/COQ5 methyltransferase family ccrud_RS00415 PF07690 Major Facilitator Superfamily ccrud_RS00435 PF14537 Cytochrome c3 ccrud_RS00435 PF00890 FAD binding domain ccrud_RS00445 PF00561 alpha/beta hydrolase fold ccrud_RS00490 PF00547 Urease, gamma subunit ccrud_RS00495 PF00699 Urease beta subunit ccrud_RS00500 PF01979 Amidohydrolase family ccrud_RS00500 PF00449 Urease alpha-subunit, N-terminal domain ccrud_RS00505 PF02814 UreE urease accessory protein, N-terminal domain ccrud_RS00510 PF01730 UreF ccrud_RS00515 PF02492 CobW/HypB/UreG, nucleotide-binding domain ccrud_RS00520 PF01774 UreD urease accessory protein ccrud_RS00530 PF00067 Cytochrome P450 ccrud_RS00545 PF00183 Hsp90 protein ccrud_RS00550 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ccrud_RS00550 PF01048 Phosphorylase superfamily ccrud_RS00560 PF00171 Aldehyde dehydrogenase family ccrud_RS00565 PF00248 Aldo/keto reductase family ccrud_RS00570 PF03806 AbgT putative transporter family ccrud_RS00580 PF02656 Domain of unknown function (DUF202) ccrud_RS00595 PF00296 Luciferase-like monooxygenase ccrud_RS00600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ccrud_RS00610 PF01232 Mannitol dehydrogenase Rossmann domain ccrud_RS00610 PF08125 Mannitol dehydrogenase C-terminal domain ccrud_RS00615 PF07690 Major Facilitator Superfamily ccrud_RS00625 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ccrud_RS00625 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ccrud_RS00630 PF02569 Pantoate-beta-alanine ligase ccrud_RS00635 PF02548 Ketopantoate hydroxymethyltransferase ccrud_RS00640 PF02661 Fic/DOC family ccrud_RS00640 PF12728 Helix-turn-helix domain ccrud_RS00650 PF13744 Helix-turn-helix domain ccrud_RS00655 PF02245 Methylpurine-DNA glycosylase (MPG) ccrud_RS00660 PF02151 UvrB/uvrC motif ccrud_RS00660 PF08459 UvrC Helix-hairpin-helix N-terminal ccrud_RS00660 PF12826 Helix-hairpin-helix motif ccrud_RS00660 PF01541 GIY-YIG catalytic domain ccrud_RS00665 PF07859 alpha/beta hydrolase fold ccrud_RS00675 PF00132 Bacterial transferase hexapeptide (six repeats) ccrud_RS00700 PF03458 UPF0126 domain ccrud_RS00710 PF02261 Aspartate decarboxylase ccrud_RS00720 PF05145 Transition state regulatory protein AbrB ccrud_RS00730 PF01925 Sulfite exporter TauE/SafE ccrud_RS00740 PF00271 Helicase conserved C-terminal domain ccrud_RS00740 PF00270 DEAD/DEAH box helicase ccrud_RS00740 PF08482 ATP-dependent helicase C-terminal ccrud_RS00740 PF04408 Helicase associated domain (HA2) ccrud_RS00750 PF00132 Bacterial transferase hexapeptide (six repeats) ccrud_RS00750 PF12464 Maltose acetyltransferase ccrud_RS00765 PF01810 LysE type translocator ccrud_RS00795 PF01042 Endoribonuclease L-PSP ccrud_RS00805 PF05649 Peptidase family M13 ccrud_RS00805 PF01431 Peptidase family M13 ccrud_RS00820 PF07702 UTRA domain ccrud_RS00820 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS00825 PF00294 pfkB family carbohydrate kinase ccrud_RS00835 PF00171 Aldehyde dehydrogenase family ccrud_RS00840 PF04962 KduI/IolB family ccrud_RS00845 PF00205 Thiamine pyrophosphate enzyme, central domain ccrud_RS00845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ccrud_RS00845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ccrud_RS00855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ccrud_RS00855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ccrud_RS00860 PF01261 Xylose isomerase-like TIM barrel ccrud_RS00865 PF07690 Major Facilitator Superfamily ccrud_RS00885 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS00890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ccrud_RS00890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ccrud_RS00910 PF00005 ABC transporter ccrud_RS00910 PF08402 TOBE domain ccrud_RS00920 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS00930 PF00083 Sugar (and other) transporter ccrud_RS00955 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS00960 PF00939 Sodium:sulfate symporter transmembrane region ccrud_RS00965 PF10397 Adenylosuccinate lyase C-terminus ccrud_RS00965 PF00206 Lyase ccrud_RS00975 PF01493 GXGXG motif ccrud_RS00975 PF01645 Conserved region in glutamate synthase ccrud_RS00975 PF00310 Glutamine amidotransferases class-II ccrud_RS00975 PF04898 Glutamate synthase central domain ccrud_RS00980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ccrud_RS00980 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS00990 PF00072 Response regulator receiver domain ccrud_RS00990 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS01000 PF14896 EmbC C-terminal domain ccrud_RS01000 PF04602 Mycobacterial cell wall arabinan synthesis protein ccrud_RS01000 PF17689 Arabinosyltransferase concanavalin like domain ccrud_RS01005 PF12249 Arabinofuranosyltransferase A C terminal ccrud_RS01005 PF12250 Arabinofuranosyltransferase N terminal ccrud_RS01010 PF00106 short chain dehydrogenase ccrud_RS01015 PF01565 FAD binding domain ccrud_RS01015 PF04030 D-arabinono-1,4-lactone oxidase ccrud_RS01040 PF04138 GtrA-like protein ccrud_RS01065 PF00005 ABC transporter ccrud_RS01070 PF01061 ABC-2 type transporter ccrud_RS01075 PF00266 Aminotransferase class-V ccrud_RS01080 PF00107 Zinc-binding dehydrogenase ccrud_RS01080 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS01095 PF00175 Oxidoreductase NAD-binding domain ccrud_RS01095 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS01095 PF00970 Oxidoreductase FAD-binding domain ccrud_RS01100 PF01235 Sodium:alanine symporter family ccrud_RS01110 PF00899 ThiF family ccrud_RS01110 PF00581 Rhodanese-like domain ccrud_RS01115 PF02391 MoaE protein ccrud_RS01120 PF00994 Probable molybdopterin binding domain ccrud_RS01120 PF01967 MoaC family ccrud_RS01125 PF01967 MoaC family ccrud_RS01130 PF03454 MoeA C-terminal region (domain IV) ccrud_RS01130 PF03453 MoeA N-terminal region (domain I and II) ccrud_RS01130 PF00994 Probable molybdopterin binding domain ccrud_RS01135 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS01150 PF08402 TOBE domain ccrud_RS01150 PF00005 ABC transporter ccrud_RS01155 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ccrud_RS01160 PF00155 Aminotransferase class I and II ccrud_RS01175 PF03448 MgtE intracellular N domain ccrud_RS01175 PF01769 Divalent cation transporter ccrud_RS01175 PF00571 CBS domain ccrud_RS01180 PF00939 Sodium:sulfate symporter transmembrane region ccrud_RS01190 PF02153 Prephenate dehydrogenase ccrud_RS01200 PF14437 MafB19-like deaminase ccrud_RS01205 PF05532 CsbD-like ccrud_RS01220 PF03176 MMPL family ccrud_RS01225 PF01702 Queuine tRNA-ribosyltransferase ccrud_RS01245 PF00749 tRNA synthetases class I (E and Q), catalytic domain ccrud_RS01265 PF12897 Alanine-glyoxylate amino-transferase ccrud_RS01275 PF12169 DNA polymerase III subunits gamma and tau domain III ccrud_RS01280 PF02575 YbaB/EbfC DNA-binding family ccrud_RS01285 PF13662 Toprim domain ccrud_RS01285 PF02132 RecR protein ccrud_RS01295 PF07993 Male sterility protein ccrud_RS01295 PF00550 Phosphopantetheine attachment site ccrud_RS01295 PF00501 AMP-binding enzyme ccrud_RS01295 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS01295 PF00668 Condensation domain ccrud_RS01305 PF07685 CobB/CobQ-like glutamine amidotransferase domain ccrud_RS01310 PF02875 Mur ligase family, glutamate ligase domain ccrud_RS01310 PF08245 Mur ligase middle domain ccrud_RS01310 PF08443 RimK-like ATP-grasp domain ccrud_RS01325 PF00682 HMGL-like ccrud_RS01325 PF08502 LeuA allosteric (dimerisation) domain ccrud_RS01345 PF00696 Amino acid kinase family ccrud_RS01345 PF01842 ACT domain ccrud_RS01345 PF13840 ACT domain ccrud_RS01350 PF02774 Semialdehyde dehydrogenase, dimerisation domain ccrud_RS01350 PF01118 Semialdehyde dehydrogenase, NAD binding domain ccrud_RS01355 PF04542 Sigma-70 region 2 ccrud_RS01355 PF08281 Sigma-70, region 4 ccrud_RS01360 PF00199 Catalase ccrud_RS01360 PF06628 Catalase-related immune-responsive ccrud_RS01390 PF00361 Proton-conducting membrane transporter ccrud_RS01395 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ccrud_RS01400 PF00361 Proton-conducting membrane transporter ccrud_RS01400 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ccrud_RS01400 PF13244 Domain of unknown function (DUF4040) ccrud_RS01400 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ccrud_RS01410 PF00486 Transcriptional regulatory protein, C terminal ccrud_RS01410 PF00072 Response regulator receiver domain ccrud_RS01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS01415 PF00672 HAMP domain ccrud_RS01415 PF00512 His Kinase A (phospho-acceptor) domain ccrud_RS01445 PF00905 Penicillin binding protein transpeptidase domain ccrud_RS01445 PF00912 Transglycosylase ccrud_RS01450 PF02467 Transcription factor WhiB ccrud_RS01460 PF00083 Sugar (and other) transporter ccrud_RS01460 PF07690 Major Facilitator Superfamily ccrud_RS01465 PF00501 AMP-binding enzyme ccrud_RS01465 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS01485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ccrud_RS01485 PF02770 Acyl-CoA dehydrogenase, middle domain ccrud_RS01485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ccrud_RS01490 PF01575 MaoC like domain ccrud_RS01495 PF16123 Hydroxyacylglutathione hydrolase C-terminus ccrud_RS01495 PF00753 Metallo-beta-lactamase superfamily ccrud_RS01500 PF13545 Crp-like helix-turn-helix domain ccrud_RS01500 PF00027 Cyclic nucleotide-binding domain ccrud_RS01510 PF00730 HhH-GPD superfamily base excision DNA repair protein ccrud_RS01510 PF00633 Helix-hairpin-helix motif ccrud_RS01510 PF10576 Iron-sulfur binding domain of endonuclease III ccrud_RS01515 PF08534 Redoxin ccrud_RS01520 PF00293 NUDIX domain ccrud_RS01525 PF02674 Colicin V production protein ccrud_RS01530 PF00561 alpha/beta hydrolase fold ccrud_RS01550 PF00437 Type II/IV secretion system protein ccrud_RS01580 PF00270 DEAD/DEAH box helicase ccrud_RS01580 PF09369 Domain of unknown function (DUF1998) ccrud_RS01580 PF00271 Helicase conserved C-terminal domain ccrud_RS01585 PF00313 'Cold-shock' DNA-binding domain ccrud_RS01595 PF13368 Topoisomerase C-terminal repeat ccrud_RS01595 PF01751 Toprim domain ccrud_RS01595 PF01131 DNA topoisomerase ccrud_RS01605 PF00672 HAMP domain ccrud_RS01605 PF00211 Adenylate and Guanylate cyclase catalytic domain ccrud_RS01610 PF09115 DNA polymerase III, delta subunit, C terminal ccrud_RS01620 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS01620 PF16295 Tetracyclin repressor-like, C-terminal domain ccrud_RS01625 PF00175 Oxidoreductase NAD-binding domain ccrud_RS01625 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS01625 PF00970 Oxidoreductase FAD-binding domain ccrud_RS01645 PF01479 S4 domain ccrud_RS01645 PF00849 RNA pseudouridylate synthase ccrud_RS01650 PF00933 Glycosyl hydrolase family 3 N terminal domain ccrud_RS01655 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS01655 PF00107 Zinc-binding dehydrogenase ccrud_RS01665 PF00106 short chain dehydrogenase ccrud_RS01670 PF07690 Major Facilitator Superfamily ccrud_RS01675 PF16363 GDP-mannose 4,6 dehydratase ccrud_RS01685 PF00535 Glycosyl transferase family 2 ccrud_RS01700 PF00746 LPXTG cell wall anchor motif ccrud_RS01700 PF00149 Calcineurin-like phosphoesterase ccrud_RS01700 PF00565 Staphylococcal nuclease homologue ccrud_RS01700 PF02872 5'-nucleotidase, C-terminal domain ccrud_RS01705 PF00107 Zinc-binding dehydrogenase ccrud_RS01705 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS01710 PF06445 GyrI-like small molecule binding domain ccrud_RS01710 PF12833 Helix-turn-helix domain ccrud_RS01715 PF00483 Nucleotidyl transferase ccrud_RS01720 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ccrud_RS01725 PF16363 GDP-mannose 4,6 dehydratase ccrud_RS01730 PF04143 Sulphur transport ccrud_RS01750 PF11838 ERAP1-like C-terminal domain ccrud_RS01750 PF01433 Peptidase family M1 domain ccrud_RS01755 PF00326 Prolyl oligopeptidase family ccrud_RS01755 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ccrud_RS01770 PF12706 Beta-lactamase superfamily domain ccrud_RS01785 PF01970 Tripartite tricarboxylate transporter TctA family ccrud_RS01790 PF02656 Domain of unknown function (DUF202) ccrud_RS01795 PF02656 Domain of unknown function (DUF202) ccrud_RS01805 PF00188 Cysteine-rich secretory protein family ccrud_RS01820 PF00756 Putative esterase ccrud_RS01820 PF08310 LGFP repeat ccrud_RS01825 PF13614 AAA domain ccrud_RS01830 PF01451 Low molecular weight phosphotyrosine protein phosphatase ccrud_RS01840 PF02719 Polysaccharide biosynthesis protein ccrud_RS01845 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ccrud_RS01850 PF01820 D-ala D-ala ligase N-terminus ccrud_RS01850 PF07478 D-ala D-ala ligase C-terminus ccrud_RS01855 PF13419 Haloacid dehalogenase-like hydrolase ccrud_RS01860 PF02397 Bacterial sugar transferase ccrud_RS01880 PF00535 Glycosyl transferase family 2 ccrud_RS01885 PF13276 HTH-like domain ccrud_RS01885 PF13333 Integrase core domain ccrud_RS01885 PF00665 Integrase core domain ccrud_RS01900 PF13333 Integrase core domain ccrud_RS01900 PF00665 Integrase core domain ccrud_RS01900 PF13276 HTH-like domain ccrud_RS01910 PF00534 Glycosyl transferases group 1 ccrud_RS01945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ccrud_RS01945 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS01950 PF00483 Nucleotidyl transferase ccrud_RS01955 PF04073 Aminoacyl-tRNA editing domain ccrud_RS01970 PF01381 Helix-turn-helix ccrud_RS01970 PF06114 IrrE N-terminal-like domain ccrud_RS01970 PF09856 Predicted transcriptional regulator (DUF2083) ccrud_RS01980 PF00890 FAD binding domain ccrud_RS01980 PF02910 Fumarate reductase flavoprotein C-term ccrud_RS01985 PF13085 2Fe-2S iron-sulfur cluster binding domain ccrud_RS01985 PF13183 4Fe-4S dicluster domain ccrud_RS02025 PF04286 Protein of unknown function (DUF445) ccrud_RS02045 PF07690 Major Facilitator Superfamily ccrud_RS02050 PF07690 Major Facilitator Superfamily ccrud_RS02055 PF01842 ACT domain ccrud_RS02055 PF00551 Formyl transferase ccrud_RS02060 PF01791 DeoC/LacD family aldolase ccrud_RS02070 PF02583 Metal-sensitive transcriptional repressor ccrud_RS02075 PF00403 Heavy-metal-associated domain ccrud_RS02095 PF01565 FAD binding domain ccrud_RS02095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ccrud_RS02105 PF00501 AMP-binding enzyme ccrud_RS02105 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS02110 PF00534 Glycosyl transferases group 1 ccrud_RS02110 PF13439 Glycosyltransferase Family 4 ccrud_RS02115 PF00300 Histidine phosphatase superfamily (branch 1) ccrud_RS02120 PF00512 His Kinase A (phospho-acceptor) domain ccrud_RS02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS02125 PF00486 Transcriptional regulatory protein, C terminal ccrud_RS02125 PF00072 Response regulator receiver domain ccrud_RS02135 PF12704 MacB-like periplasmic core domain ccrud_RS02135 PF02687 FtsX-like permease family ccrud_RS02145 PF02541 Ppx/GppA phosphatase family ccrud_RS02155 PF03807 NADP oxidoreductase coenzyme F420-dependent ccrud_RS02155 PF14748 Pyrroline-5-carboxylate reductase dimerisation ccrud_RS02160 PF12728 Helix-turn-helix domain ccrud_RS02170 PF05768 Glutaredoxin-like domain (DUF836) ccrud_RS02175 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ccrud_RS02175 PF01488 Shikimate / quinate 5-dehydrogenase ccrud_RS02175 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ccrud_RS02180 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ccrud_RS02180 PF03900 Porphobilinogen deaminase, C-terminal domain ccrud_RS02190 PF03466 LysR substrate binding domain ccrud_RS02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS02195 PF00083 Sugar (and other) transporter ccrud_RS02200 PF01261 Xylose isomerase-like TIM barrel ccrud_RS02200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ccrud_RS02205 PF01220 Dehydroquinase class II ccrud_RS02210 PF08501 Shikimate dehydrogenase substrate binding domain ccrud_RS02210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ccrud_RS02215 PF00542 Ribosomal protein L7/L12 C-terminal domain ccrud_RS02215 PF16320 Ribosomal protein L7/L12 dimerisation domain ccrud_RS02220 PF00005 ABC transporter ccrud_RS02220 PF08402 TOBE domain ccrud_RS02225 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS02235 PF10414 Sirohaem synthase dimerisation region ccrud_RS02235 PF14824 Sirohaem biosynthesis protein central ccrud_RS02235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ccrud_RS02245 PF00490 Delta-aminolevulinic acid dehydratase ccrud_RS02260 PF00403 Heavy-metal-associated domain ccrud_RS02265 PF01208 Uroporphyrinogen decarboxylase (URO-D) ccrud_RS02275 PF00202 Aminotransferase class-III ccrud_RS02280 PF00300 Histidine phosphatase superfamily (branch 1) ccrud_RS02290 PF02683 Cytochrome C biogenesis protein transmembrane region ccrud_RS02295 PF05140 ResB-like family ccrud_RS02300 PF01578 Cytochrome C assembly protein ccrud_RS02305 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS02315 PF00005 ABC transporter ccrud_RS02350 PF01040 UbiA prenyltransferase family ccrud_RS02360 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS02360 PF00501 AMP-binding enzyme ccrud_RS02370 PF00171 Aldehyde dehydrogenase family ccrud_RS02375 PF00701 Dihydrodipicolinate synthetase family ccrud_RS02380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS02380 PF03466 LysR substrate binding domain ccrud_RS02405 PF01384 Phosphate transporter family ccrud_RS02410 PF00378 Enoyl-CoA hydratase/isomerase ccrud_RS02415 PF01329 Pterin 4 alpha carbinolamine dehydratase ccrud_RS02420 PF03575 Peptidase family S51 ccrud_RS02425 PF13378 Enolase C-terminal domain-like ccrud_RS02425 PF18374 Enolase N-terminal domain-like ccrud_RS02430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ccrud_RS02440 PF13439 Glycosyltransferase Family 4 ccrud_RS02440 PF00534 Glycosyl transferases group 1 ccrud_RS02445 PF00324 Amino acid permease ccrud_RS02450 PF01209 ubiE/COQ5 methyltransferase family ccrud_RS02455 PF01494 FAD binding domain ccrud_RS02460 PF00348 Polyprenyl synthetase ccrud_RS02490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ccrud_RS02495 PF02357 Transcription termination factor nusG ccrud_RS02500 PF00298 Ribosomal protein L11, RNA binding domain ccrud_RS02500 PF03946 Ribosomal protein L11, N-terminal domain ccrud_RS02505 PF00687 Ribosomal protein L1p/L10e family ccrud_RS02510 PF00403 Heavy-metal-associated domain ccrud_RS02525 PF00466 Ribosomal protein L10 ccrud_RS02530 PF16320 Ribosomal protein L7/L12 dimerisation domain ccrud_RS02530 PF00542 Ribosomal protein L7/L12 C-terminal domain ccrud_RS02550 PF04560 RNA polymerase Rpb2, domain 7 ccrud_RS02550 PF04565 RNA polymerase Rpb2, domain 3 ccrud_RS02550 PF04563 RNA polymerase beta subunit ccrud_RS02550 PF00562 RNA polymerase Rpb2, domain 6 ccrud_RS02550 PF10385 RNA polymerase beta subunit external 1 domain ccrud_RS02550 PF04561 RNA polymerase Rpb2, domain 2 ccrud_RS02555 PF04997 RNA polymerase Rpb1, domain 1 ccrud_RS02555 PF00623 RNA polymerase Rpb1, domain 2 ccrud_RS02555 PF04983 RNA polymerase Rpb1, domain 3 ccrud_RS02555 PF04998 RNA polymerase Rpb1, domain 5 ccrud_RS02575 PF00164 Ribosomal protein S12/S23 ccrud_RS02580 PF00177 Ribosomal protein S7p/S5e ccrud_RS02585 PF00679 Elongation factor G C-terminus ccrud_RS02585 PF14492 Elongation Factor G, domain II ccrud_RS02585 PF03764 Elongation factor G, domain IV ccrud_RS02585 PF00009 Elongation factor Tu GTP binding domain ccrud_RS02585 PF03144 Elongation factor Tu domain 2 ccrud_RS02590 PF00009 Elongation factor Tu GTP binding domain ccrud_RS02590 PF03143 Elongation factor Tu C-terminal domain ccrud_RS02590 PF03144 Elongation factor Tu domain 2 ccrud_RS02600 PF00338 Ribosomal protein S10p/S20e ccrud_RS02605 PF00297 Ribosomal protein L3 ccrud_RS02610 PF00573 Ribosomal protein L4/L1 family ccrud_RS02615 PF00276 Ribosomal protein L23 ccrud_RS02620 PF03947 Ribosomal Proteins L2, C-terminal domain ccrud_RS02620 PF00181 Ribosomal Proteins L2, RNA binding domain ccrud_RS02625 PF00203 Ribosomal protein S19 ccrud_RS02630 PF00237 Ribosomal protein L22p/L17e ccrud_RS02635 PF00189 Ribosomal protein S3, C-terminal domain ccrud_RS02635 PF07650 KH domain ccrud_RS02640 PF00252 Ribosomal protein L16p/L10e ccrud_RS02645 PF00831 Ribosomal L29 protein ccrud_RS02650 PF00366 Ribosomal protein S17 ccrud_RS02660 PF00238 Ribosomal protein L14p/L23e ccrud_RS02665 PF00467 KOW motif ccrud_RS02665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ccrud_RS02670 PF00673 ribosomal L5P family C-terminus ccrud_RS02670 PF00281 Ribosomal protein L5 ccrud_RS02680 PF01965 DJ-1/PfpI family ccrud_RS02690 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ccrud_RS02690 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ccrud_RS02695 PF00248 Aldo/keto reductase family ccrud_RS02705 PF02634 FdhD/NarQ family ccrud_RS02715 PF00384 Molybdopterin oxidoreductase ccrud_RS02715 PF01568 Molydopterin dinucleotide binding domain ccrud_RS02730 PF00005 ABC transporter ccrud_RS02755 PF00410 Ribosomal protein S8 ccrud_RS02760 PF00347 Ribosomal protein L6 ccrud_RS02765 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ccrud_RS02770 PF00333 Ribosomal protein S5, N-terminal domain ccrud_RS02770 PF03719 Ribosomal protein S5, C-terminal domain ccrud_RS02775 PF00327 Ribosomal protein L30p/L7e ccrud_RS02780 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ccrud_RS02785 PF00171 Aldehyde dehydrogenase family ccrud_RS02795 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS02795 PF14759 Reductase C-terminal ccrud_RS02800 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS02810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ccrud_RS02810 PF00391 PEP-utilising enzyme, mobile domain ccrud_RS02815 PF00391 PEP-utilising enzyme, mobile domain ccrud_RS02815 PF02896 PEP-utilising enzyme, TIM barrel domain ccrud_RS02815 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ccrud_RS02820 PF00067 Cytochrome P450 ccrud_RS02825 PF01614 Bacterial transcriptional regulator ccrud_RS02825 PF09339 IclR helix-turn-helix domain ccrud_RS02830 PF00344 SecY translocase ccrud_RS02840 PF00557 Metallopeptidase family M24 ccrud_RS02850 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ccrud_RS02850 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ccrud_RS02850 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ccrud_RS02865 PF16363 GDP-mannose 4,6 dehydratase ccrud_RS02875 PF01370 NAD dependent epimerase/dehydratase family ccrud_RS02880 PF01176 Translation initiation factor 1A / IF-1 ccrud_RS02885 PF00416 Ribosomal protein S13/S18 ccrud_RS02890 PF00411 Ribosomal protein S11 ccrud_RS02895 PF00163 Ribosomal protein S4/S9 N-terminal domain ccrud_RS02895 PF01479 S4 domain ccrud_RS02900 PF01000 RNA polymerase Rpb3/RpoA insert domain ccrud_RS02900 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ccrud_RS02900 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ccrud_RS02905 PF01196 Ribosomal protein L17 ccrud_RS02910 PF01416 tRNA pseudouridine synthase ccrud_RS02920 PF05108 Type VII secretion system ESX-1, transport TM domain B ccrud_RS02930 PF00082 Subtilase family ccrud_RS02940 PF01580 FtsK/SpoIIIE family ccrud_RS02950 PF06013 Proteins of 100 residues with WXG ccrud_RS02955 PF06013 Proteins of 100 residues with WXG ccrud_RS02960 PF00572 Ribosomal protein L13 ccrud_RS02965 PF00380 Ribosomal protein S9/S16 ccrud_RS02975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ccrud_RS02975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ccrud_RS02975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ccrud_RS02975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ccrud_RS03000 PF00842 Alanine racemase, C-terminal domain ccrud_RS03000 PF01168 Alanine racemase, N-terminal domain ccrud_RS03005 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ccrud_RS03010 PF06826 Predicted Permease Membrane Region ccrud_RS03010 PF02080 TrkA-C domain ccrud_RS03015 PF00561 alpha/beta hydrolase fold ccrud_RS03020 PF00814 Glycoprotease family ccrud_RS03025 PF00583 Acetyltransferase (GNAT) family ccrud_RS03030 PF00814 Glycoprotease family ccrud_RS03035 PF03853 YjeF-related protein N-terminus ccrud_RS03035 PF01256 Carbohydrate kinase ccrud_RS03045 PF00166 Chaperonin 10 Kd subunit ccrud_RS03050 PF00118 TCP-1/cpn60 chaperonin family ccrud_RS03055 PF02467 Transcription factor WhiB ccrud_RS03060 PF08281 Sigma-70, region 4 ccrud_RS03060 PF04542 Sigma-70 region 2 ccrud_RS03070 PF17252 Family of unknown function (DUF5319) ccrud_RS03075 PF00478 IMP dehydrogenase / GMP reductase domain ccrud_RS03075 PF00571 CBS domain ccrud_RS03080 PF00478 IMP dehydrogenase / GMP reductase domain ccrud_RS03085 PF00117 Glutamine amidotransferase class-I ccrud_RS03085 PF00958 GMP synthase C terminal domain ccrud_RS03085 PF02540 NAD synthase ccrud_RS03105 PF00072 Response regulator receiver domain ccrud_RS03105 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS03140 PF01040 UbiA prenyltransferase family ccrud_RS03155 PF01593 Flavin containing amine oxidoreductase ccrud_RS03165 PF03176 MMPL family ccrud_RS03185 PF13460 NAD(P)H-binding ccrud_RS03185 PF11066 Protein of unknown function (DUF2867) ccrud_RS03190 PF03441 FAD binding domain of DNA photolyase ccrud_RS03190 PF00875 DNA photolyase ccrud_RS03195 PF00535 Glycosyl transferase family 2 ccrud_RS03205 PF02687 FtsX-like permease family ccrud_RS03205 PF12704 MacB-like periplasmic core domain ccrud_RS03205 PF00005 ABC transporter ccrud_RS03210 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS03215 PF09383 NIL domain ccrud_RS03215 PF00005 ABC transporter ccrud_RS03220 PF03180 NLPA lipoprotein ccrud_RS03235 PF02742 Iron dependent repressor, metal binding and dimerisation domain ccrud_RS03235 PF01325 Iron dependent repressor, N-terminal DNA binding domain ccrud_RS03235 PF18357 Diphteria toxin repressor SH3 domain ccrud_RS03245 PF02146 Sir2 family ccrud_RS03255 PF00588 SpoU rRNA Methylase family ccrud_RS03260 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ccrud_RS03260 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ccrud_RS03280 PF00561 alpha/beta hydrolase fold ccrud_RS03285 PF01053 Cys/Met metabolism PLP-dependent enzyme ccrud_RS03290 PF13722 5TM C-terminal transporter carbon starvation CstA ccrud_RS03290 PF02554 Carbon starvation protein CstA ccrud_RS03300 PF03971 Monomeric isocitrate dehydrogenase ccrud_RS03310 PF00005 ABC transporter ccrud_RS03315 PF01032 FecCD transport family ccrud_RS03320 PF01032 FecCD transport family ccrud_RS03330 PF07690 Major Facilitator Superfamily ccrud_RS03340 PF03458 UPF0126 domain ccrud_RS03355 PF00005 ABC transporter ccrud_RS03360 PF01032 FecCD transport family ccrud_RS03365 PF00579 tRNA synthetases class I (W and Y) ccrud_RS03370 PF03631 Virulence factor BrkB ccrud_RS03380 PF00768 D-alanyl-D-alanine carboxypeptidase ccrud_RS03390 PF01476 LysM domain ccrud_RS03390 PF00877 NlpC/P60 family ccrud_RS03410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ccrud_RS03410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ccrud_RS03410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ccrud_RS03410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ccrud_RS03415 PF04107 Glutamate-cysteine ligase family 2(GCS2) ccrud_RS03415 PF01546 Peptidase family M20/M25/M40 ccrud_RS03420 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS03420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ccrud_RS03425 PF02785 Biotin carboxylase C-terminal domain ccrud_RS03425 PF00682 HMGL-like ccrud_RS03425 PF00289 Biotin carboxylase, N-terminal domain ccrud_RS03425 PF00364 Biotin-requiring enzyme ccrud_RS03425 PF02436 Conserved carboxylase domain ccrud_RS03425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ccrud_RS03430 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS03435 PF03972 MmgE/PrpD family ccrud_RS03445 PF00285 Citrate synthase, C-terminal domain ccrud_RS03450 PF00364 Biotin-requiring enzyme ccrud_RS03450 PF00289 Biotin carboxylase, N-terminal domain ccrud_RS03450 PF02785 Biotin carboxylase C-terminal domain ccrud_RS03450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ccrud_RS03455 PF00581 Rhodanese-like domain ccrud_RS03460 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ccrud_RS03460 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ccrud_RS03470 PF01757 Acyltransferase family ccrud_RS03475 PF02545 Maf-like protein ccrud_RS03485 PF01039 Carboxyl transferase domain ccrud_RS03490 PF01039 Carboxyl transferase domain ccrud_RS03505 PF02222 ATP-grasp domain ccrud_RS03505 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ccrud_RS03510 PF02705 K+ potassium transporter ccrud_RS03520 PF00731 AIR carboxylase ccrud_RS03535 PF00296 Luciferase-like monooxygenase ccrud_RS03565 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS03570 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS03580 PF01547 Bacterial extracellular solute-binding protein ccrud_RS03585 PF00005 ABC transporter ccrud_RS03585 PF17912 MalK OB fold domain ccrud_RS03605 PF03816 Cell envelope-related transcriptional attenuator domain ccrud_RS03605 PF13399 LytR cell envelope-related transcriptional attenuator ccrud_RS03615 PF00483 Nucleotidyl transferase ccrud_RS03620 PF02467 Transcription factor WhiB ccrud_RS03635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ccrud_RS03635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ccrud_RS03635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ccrud_RS03635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ccrud_RS03645 PF01238 Phosphomannose isomerase type I ccrud_RS03660 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ccrud_RS03660 PF05221 S-adenosyl-L-homocysteine hydrolase ccrud_RS03665 PF02223 Thymidylate kinase ccrud_RS03670 PF00072 Response regulator receiver domain ccrud_RS03670 PF00486 Transcriptional regulatory protein, C terminal ccrud_RS03675 PF00672 HAMP domain ccrud_RS03675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS03675 PF00512 His Kinase A (phospho-acceptor) domain ccrud_RS03680 PF10647 Lipoprotein LpqB beta-propeller domain ccrud_RS03680 PF10646 Sporulation and spore germination ccrud_RS03690 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ccrud_RS03690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ccrud_RS03695 PF07516 SecA Wing and Scaffold domain ccrud_RS03695 PF07517 SecA DEAD-like domain ccrud_RS03695 PF01043 SecA preprotein cross-linking domain ccrud_RS03705 PF13419 Haloacid dehalogenase-like hydrolase ccrud_RS03715 PF03193 RsgA GTPase ccrud_RS03720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ccrud_RS03735 PF04542 Sigma-70 region 2 ccrud_RS03735 PF08281 Sigma-70, region 4 ccrud_RS03740 PF02467 Transcription factor WhiB ccrud_RS03755 PF00270 DEAD/DEAH box helicase ccrud_RS03755 PF00271 Helicase conserved C-terminal domain ccrud_RS03775 PF00580 UvrD/REP helicase N-terminal domain ccrud_RS03775 PF13361 UvrD-like helicase C-terminal domain ccrud_RS03780 PF00580 UvrD/REP helicase N-terminal domain ccrud_RS03780 PF13361 UvrD-like helicase C-terminal domain ccrud_RS03785 PF02254 TrkA-N domain ccrud_RS03785 PF07885 Ion channel ccrud_RS03790 PF00293 NUDIX domain ccrud_RS03790 PF09297 NADH pyrophosphatase zinc ribbon domain ccrud_RS03795 PF00580 UvrD/REP helicase N-terminal domain ccrud_RS03795 PF00570 HRDC domain ccrud_RS03795 PF13361 UvrD-like helicase C-terminal domain ccrud_RS03815 PF05362 Lon protease (S16) C-terminal proteolytic domain ccrud_RS03815 PF13180 PDZ domain ccrud_RS03835 PF03699 Uncharacterised protein family (UPF0182) ccrud_RS03840 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS03845 PF01680 SOR/SNZ family ccrud_RS03850 PF01174 SNO glutamine amidotransferase family ccrud_RS03865 PF05154 TM2 domain ccrud_RS03875 PF00459 Inositol monophosphatase family ccrud_RS03880 PF00459 Inositol monophosphatase family ccrud_RS03885 PF00472 RF-1 domain ccrud_RS03885 PF03462 PCRF domain ccrud_RS03890 PF00005 ABC transporter ccrud_RS03895 PF02687 FtsX-like permease family ccrud_RS03895 PF18075 FtsX extracellular domain ccrud_RS03900 PF01668 SmpB protein ccrud_RS03905 PF04343 Protein of unknown function, DUF488 ccrud_RS03980 PF01032 FecCD transport family ccrud_RS03985 PF01032 FecCD transport family ccrud_RS03990 PF00005 ABC transporter ccrud_RS04010 PF00155 Aminotransferase class I and II ccrud_RS04020 PF00271 Helicase conserved C-terminal domain ccrud_RS04020 PF04851 Type III restriction enzyme, res subunit ccrud_RS04035 PF11574 Protein of unknown function (DUF3235) ccrud_RS04035 PF06737 Transglycosylase-like domain ccrud_RS04040 PF00313 'Cold-shock' DNA-binding domain ccrud_RS04060 PF00860 Permease family ccrud_RS04065 PF00588 SpoU rRNA Methylase family ccrud_RS04075 PF11268 Protein of unknown function (DUF3071) ccrud_RS04080 PF00266 Aminotransferase class-V ccrud_RS04085 PF00285 Citrate synthase, C-terminal domain ccrud_RS04090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ccrud_RS04095 PF01039 Carboxyl transferase domain ccrud_RS04105 PF00474 Sodium:solute symporter family ccrud_RS04115 PF08924 Domain of unknown function (DUF1906) ccrud_RS04120 PF00698 Acyl transferase domain ccrud_RS04150 PF00462 Glutaredoxin ccrud_RS04155 PF00186 Dihydrofolate reductase ccrud_RS04160 PF00303 Thymidylate synthase ccrud_RS04165 PF00459 Inositol monophosphatase family ccrud_RS04170 PF00271 Helicase conserved C-terminal domain ccrud_RS04170 PF08494 DEAD/H associated ccrud_RS04170 PF00270 DEAD/DEAH box helicase ccrud_RS04175 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ccrud_RS04175 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ccrud_RS04180 PF03733 Inner membrane component domain ccrud_RS04185 PF09335 SNARE associated Golgi protein ccrud_RS04195 PF07690 Major Facilitator Superfamily ccrud_RS04200 PF00342 Phosphoglucose isomerase ccrud_RS04205 PF00171 Aldehyde dehydrogenase family ccrud_RS04215 PF01817 Chorismate mutase type II ccrud_RS04220 PF00580 UvrD/REP helicase N-terminal domain ccrud_RS04220 PF13361 UvrD-like helicase C-terminal domain ccrud_RS04230 PF02687 FtsX-like permease family ccrud_RS04230 PF12704 MacB-like periplasmic core domain ccrud_RS04230 PF00005 ABC transporter ccrud_RS04240 PF01551 Peptidase family M23 ccrud_RS04250 PF00551 Formyl transferase ccrud_RS04255 PF02142 MGS-like domain ccrud_RS04255 PF01808 AICARFT/IMPCHase bienzyme ccrud_RS04260 PF03328 HpcH/HpaI aldolase/citrate lyase family ccrud_RS04265 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS04275 PF01084 Ribosomal protein S18 ccrud_RS04280 PF00253 Ribosomal protein S14p/S29e ccrud_RS04285 PF00471 Ribosomal protein L33 ccrud_RS04290 PF00830 Ribosomal L28 family ccrud_RS04295 PF00916 Sulfate permease family ccrud_RS04295 PF01740 STAS domain ccrud_RS04305 PF01197 Ribosomal protein L31 ccrud_RS04310 PF01783 Ribosomal L32p protein family ccrud_RS04320 PF00672 HAMP domain ccrud_RS04320 PF00512 His Kinase A (phospho-acceptor) domain ccrud_RS04320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS04325 PF13180 PDZ domain ccrud_RS04340 PF01741 Large-conductance mechanosensitive channel, MscL ccrud_RS04355 PF00483 Nucleotidyl transferase ccrud_RS04360 PF00994 Probable molybdopterin binding domain ccrud_RS04360 PF03453 MoeA N-terminal region (domain I and II) ccrud_RS04360 PF03454 MoeA C-terminal region (domain IV) ccrud_RS04365 PF13302 Acetyltransferase (GNAT) domain ccrud_RS04375 PF07690 Major Facilitator Superfamily ccrud_RS04390 PF00128 Alpha amylase, catalytic domain ccrud_RS04390 PF16657 Maltogenic Amylase, C-terminal domain ccrud_RS04395 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase ccrud_RS04395 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ccrud_RS04400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ccrud_RS04405 PF02028 BCCT, betaine/carnitine/choline family transporter ccrud_RS04410 PF08264 Anticodon-binding domain of tRNA ccrud_RS04410 PF09334 tRNA synthetases class I (M) ccrud_RS04415 PF16124 RecQ zinc-binding ccrud_RS04415 PF00270 DEAD/DEAH box helicase ccrud_RS04415 PF00271 Helicase conserved C-terminal domain ccrud_RS04415 PF00570 HRDC domain ccrud_RS04415 PF09382 RQC domain ccrud_RS04430 PF09348 Domain of unknown function (DUF1990) ccrud_RS04435 PF02502 Ribose/Galactose Isomerase ccrud_RS04450 PF03480 Bacterial extracellular solute-binding protein, family 7 ccrud_RS04455 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ccrud_RS04455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ccrud_RS04470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ccrud_RS04470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ccrud_RS04490 PF01026 TatD related DNase ccrud_RS04495 PF06737 Transglycosylase-like domain ccrud_RS04495 PF07501 G5 domain ccrud_RS04495 PF03990 G5-linked-Ubiquitin-like domain ccrud_RS04500 PF00398 Ribosomal RNA adenine dimethylase ccrud_RS04505 PF00288 GHMP kinases N terminal domain ccrud_RS04505 PF08544 GHMP kinases C terminal ccrud_RS04510 PF00005 ABC transporter ccrud_RS04510 PF16326 ABC transporter C-terminal domain ccrud_RS04510 PF12848 ABC transporter ccrud_RS04515 PF08543 Phosphomethylpyrimidine kinase ccrud_RS04520 PF00578 AhpC/TSA family ccrud_RS04535 PF03976 Polyphosphate kinase 2 (PPK2) ccrud_RS04560 PF08310 LGFP repeat ccrud_RS04560 PF00756 Putative esterase ccrud_RS04570 PF03176 MMPL family ccrud_RS04575 PF03737 Aldolase/RraA ccrud_RS04595 PF00009 Elongation factor Tu GTP binding domain ccrud_RS04595 PF16658 Class II release factor RF3, C-terminal domain ccrud_RS04605 PF02653 Branched-chain amino acid transport system / permease component ccrud_RS04615 PF00005 ABC transporter ccrud_RS04620 PF00005 ABC transporter ccrud_RS04625 PF01195 Peptidyl-tRNA hydrolase ccrud_RS04630 PF03060 Nitronate monooxygenase ccrud_RS04635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ccrud_RS04635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ccrud_RS04645 PF01195 Peptidyl-tRNA hydrolase ccrud_RS04650 PF14693 Ribosomal protein TL5, C-terminal domain ccrud_RS04650 PF01386 Ribosomal L25p family ccrud_RS04665 PF14572 Phosphoribosyl synthetase-associated domain ccrud_RS04665 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ccrud_RS04670 PF12804 MobA-like NTP transferase domain ccrud_RS04670 PF00132 Bacterial transferase hexapeptide (six repeats) ccrud_RS04680 PF07732 Multicopper oxidase ccrud_RS04680 PF07731 Multicopper oxidase ccrud_RS04685 PF00005 ABC transporter ccrud_RS04695 PF07730 Histidine kinase ccrud_RS04720 PF03737 Aldolase/RraA ccrud_RS04750 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS04755 PF00270 DEAD/DEAH box helicase ccrud_RS04755 PF00271 Helicase conserved C-terminal domain ccrud_RS04755 PF03461 TRCF domain ccrud_RS04755 PF17757 UvrB interaction domain ccrud_RS04755 PF02559 CarD-like/TRCF domain ccrud_RS04760 PF00005 ABC transporter ccrud_RS04760 PF00664 ABC transporter transmembrane region ccrud_RS04765 PF00664 ABC transporter transmembrane region ccrud_RS04765 PF00005 ABC transporter ccrud_RS04770 PF09924 Uncharacterised conserved protein (DUF2156) ccrud_RS04775 PF00756 Putative esterase ccrud_RS04780 PF13520 Amino acid permease ccrud_RS04790 PF03819 MazG nucleotide pyrophosphohydrolase domain ccrud_RS04810 PF03952 Enolase, N-terminal domain ccrud_RS04810 PF00113 Enolase, C-terminal TIM barrel domain ccrud_RS04825 PF02541 Ppx/GppA phosphatase family ccrud_RS04835 PF12833 Helix-turn-helix domain ccrud_RS04850 PF01272 Transcription elongation factor, GreA/GreB, C-term ccrud_RS04850 PF03449 Transcription elongation factor, N-terminal ccrud_RS04860 PF02585 GlcNAc-PI de-N-acetylase ccrud_RS04870 PF00793 DAHP synthetase I family ccrud_RS04875 PF01255 Putative undecaprenyl diphosphate synthase ccrud_RS04890 PF00485 Phosphoribulokinase / Uridine kinase family ccrud_RS04895 PF00464 Serine hydroxymethyltransferase ccrud_RS04900 PF00425 chorismate binding enzyme ccrud_RS04900 PF04715 Anthranilate synthase component I, N terminal region ccrud_RS04900 PF00117 Glutamine amidotransferase class-I ccrud_RS04935 PF03746 LamB/YcsF family ccrud_RS04940 PF01566 Natural resistance-associated macrophage protein ccrud_RS04945 PF07729 FCD domain ccrud_RS04945 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS04955 PF10415 Fumarase C C-terminus ccrud_RS04955 PF00206 Lyase ccrud_RS04960 PF07729 FCD domain ccrud_RS04960 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS04965 PF02515 CoA-transferase family III ccrud_RS04970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ccrud_RS04985 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ccrud_RS04995 PF07690 Major Facilitator Superfamily ccrud_RS05000 PF01047 MarR family ccrud_RS05005 PF02609 Exonuclease VII small subunit ccrud_RS05010 PF13742 OB-fold nucleic acid binding domain ccrud_RS05010 PF02601 Exonuclease VII, large subunit ccrud_RS05015 PF02401 LytB protein ccrud_RS05025 PF01594 AI-2E family transporter ccrud_RS05035 PF00209 Sodium:neurotransmitter symporter family ccrud_RS05040 PF06071 Protein of unknown function (DUF933) ccrud_RS05040 PF01926 50S ribosome-binding GTPase ccrud_RS05045 PF00313 'Cold-shock' DNA-binding domain ccrud_RS05075 PF00916 Sulfate permease family ccrud_RS05075 PF01740 STAS domain ccrud_RS05095 PF17863 AAA lid domain ccrud_RS05095 PF01078 Magnesium chelatase, subunit ChlI ccrud_RS05100 PF00300 Histidine phosphatase superfamily (branch 1) ccrud_RS05115 PF12848 ABC transporter ccrud_RS05115 PF16326 ABC transporter C-terminal domain ccrud_RS05115 PF00005 ABC transporter ccrud_RS05125 PF08274 PhnA Zinc-Ribbon ccrud_RS05125 PF03831 PhnA domain ccrud_RS05135 PF07690 Major Facilitator Superfamily ccrud_RS05150 PF00266 Aminotransferase class-V ccrud_RS05155 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ccrud_RS05155 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ccrud_RS05160 PF02445 Quinolinate synthetase A protein ccrud_RS05180 PF04237 YjbR ccrud_RS05185 PF03099 Biotin/lipoate A/B protein ligase family ccrud_RS05195 PF01494 FAD binding domain ccrud_RS05200 PF09819 ABC-type cobalt transport system, permease component ccrud_RS05205 PF00005 ABC transporter ccrud_RS05220 PF01699 Sodium/calcium exchanger protein ccrud_RS05230 PF09529 Integral membrane protein (intg_mem_TP0381) ccrud_RS05235 PF17760 UvrA interaction domain ccrud_RS05235 PF17755 UvrA DNA-binding domain ccrud_RS05235 PF00005 ABC transporter ccrud_RS05240 PF08534 Redoxin ccrud_RS05250 PF05661 Protein of unknown function (DUF808) ccrud_RS05255 PF08546 Ketopantoate reductase PanE/ApbA C terminal ccrud_RS05255 PF02558 Ketopantoate reductase PanE/ApbA ccrud_RS05265 PF00293 NUDIX domain ccrud_RS05275 PF00089 Trypsin ccrud_RS05280 PF03960 ArsC family ccrud_RS05300 PF00009 Elongation factor Tu GTP binding domain ccrud_RS05300 PF03144 Elongation factor Tu domain 2 ccrud_RS05300 PF00679 Elongation factor G C-terminus ccrud_RS05300 PF14492 Elongation Factor G, domain II ccrud_RS05310 PF02585 GlcNAc-PI de-N-acetylase ccrud_RS05320 PF00037 4Fe-4S binding domain ccrud_RS05325 PF00155 Aminotransferase class I and II ccrud_RS05340 PF14602 Hexapeptide repeat of succinyl-transferase ccrud_RS05340 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ccrud_RS05345 PF00324 Amino acid permease ccrud_RS05350 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle ccrud_RS05350 PF14602 Hexapeptide repeat of succinyl-transferase ccrud_RS05355 PF07687 Peptidase dimerisation domain ccrud_RS05355 PF01546 Peptidase family M20/M25/M40 ccrud_RS05360 PF03641 Possible lysine decarboxylase ccrud_RS05365 PF00809 Pterin binding enzyme ccrud_RS05370 PF00535 Glycosyl transferase family 2 ccrud_RS05395 PF13439 Glycosyltransferase Family 4 ccrud_RS05395 PF00534 Glycosyl transferases group 1 ccrud_RS05400 PF00483 Nucleotidyl transferase ccrud_RS05405 PF01596 O-methyltransferase ccrud_RS05410 PF08281 Sigma-70, region 4 ccrud_RS05410 PF04542 Sigma-70 region 2 ccrud_RS05425 PF01883 Iron-sulfur cluster assembly protein ccrud_RS05425 PF10609 NUBPL iron-transfer P-loop NTPase ccrud_RS05455 PF02779 Transketolase, pyrimidine binding domain ccrud_RS05455 PF16870 2-oxoglutarate dehydrogenase C-terminal ccrud_RS05455 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ccrud_RS05455 PF16078 2-oxoglutarate dehydrogenase N-terminus ccrud_RS05455 PF00676 Dehydrogenase E1 component ccrud_RS05460 PF00005 ABC transporter ccrud_RS05460 PF00664 ABC transporter transmembrane region ccrud_RS05470 PF08501 Shikimate dehydrogenase substrate binding domain ccrud_RS05475 PF00135 Carboxylesterase family ccrud_RS05495 PF07690 Major Facilitator Superfamily ccrud_RS05505 PF08267 Cobalamin-independent synthase, N-terminal domain ccrud_RS05505 PF01717 Cobalamin-independent synthase, Catalytic domain ccrud_RS05530 PF00664 ABC transporter transmembrane region ccrud_RS05530 PF00005 ABC transporter ccrud_RS05535 PF00005 ABC transporter ccrud_RS05535 PF00664 ABC transporter transmembrane region ccrud_RS05540 PF02322 Cytochrome bd terminal oxidase subunit II ccrud_RS05545 PF01654 Cytochrome bd terminal oxidase subunit I ccrud_RS05555 PF00293 NUDIX domain ccrud_RS05565 PF00324 Amino acid permease ccrud_RS05570 PF03880 DbpA RNA binding domain ccrud_RS05570 PF00271 Helicase conserved C-terminal domain ccrud_RS05570 PF00270 DEAD/DEAH box helicase ccrud_RS05575 PF00465 Iron-containing alcohol dehydrogenase ccrud_RS05580 PF04444 Catechol dioxygenase N terminus ccrud_RS05580 PF00775 Dioxygenase ccrud_RS05595 PF00474 Sodium:solute symporter family ccrud_RS05600 PF00176 SNF2 family N-terminal domain ccrud_RS05600 PF00271 Helicase conserved C-terminal domain ccrud_RS05600 PF12419 SNF2 Helicase protein ccrud_RS05615 PF13175 AAA ATPase domain ccrud_RS05620 PF07859 alpha/beta hydrolase fold ccrud_RS05625 PF01144 Coenzyme A transferase ccrud_RS05630 PF01144 Coenzyme A transferase ccrud_RS05645 PF02667 Short chain fatty acid transporter ccrud_RS05650 PF04264 YceI-like domain ccrud_RS05655 PF01047 MarR family ccrud_RS05670 PF00027 Cyclic nucleotide-binding domain ccrud_RS05670 PF13545 Crp-like helix-turn-helix domain ccrud_RS05680 PF00403 Heavy-metal-associated domain ccrud_RS05695 PF00561 alpha/beta hydrolase fold ccrud_RS05700 PF03485 Arginyl tRNA synthetase N terminal domain ccrud_RS05700 PF05746 DALR anticodon binding domain ccrud_RS05700 PF00750 tRNA synthetases class I (R) ccrud_RS05705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ccrud_RS05705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ccrud_RS05710 PF00742 Homoserine dehydrogenase ccrud_RS05710 PF01842 ACT domain ccrud_RS05710 PF03447 Homoserine dehydrogenase, NAD binding domain ccrud_RS05715 PF00288 GHMP kinases N terminal domain ccrud_RS05725 PF00384 Molybdopterin oxidoreductase ccrud_RS05725 PF02613 Nitrate reductase delta subunit ccrud_RS05725 PF02665 Nitrate reductase gamma subunit ccrud_RS05735 PF14711 Respiratory nitrate reductase beta C-terminal ccrud_RS05735 PF13247 4Fe-4S dicluster domain ccrud_RS05740 PF01568 Molydopterin dinucleotide binding domain ccrud_RS05740 PF00384 Molybdopterin oxidoreductase ccrud_RS05745 PF07690 Major Facilitator Superfamily ccrud_RS05750 PF00994 Probable molybdopterin binding domain ccrud_RS05750 PF01967 MoaC family ccrud_RS05755 PF00082 Subtilase family ccrud_RS05755 PF12951 Passenger-associated-transport-repeat ccrud_RS05755 PF03797 Autotransporter beta-domain ccrud_RS05760 PF01595 Cyclin M transmembrane N-terminal domain ccrud_RS05760 PF03471 Transporter associated domain ccrud_RS05760 PF00571 CBS domain ccrud_RS05765 PF00571 CBS domain ccrud_RS05765 PF01595 Cyclin M transmembrane N-terminal domain ccrud_RS05770 PF12804 MobA-like NTP transferase domain ccrud_RS05775 PF03454 MoeA C-terminal region (domain IV) ccrud_RS05775 PF00994 Probable molybdopterin binding domain ccrud_RS05775 PF03453 MoeA N-terminal region (domain I and II) ccrud_RS05780 PF06463 Molybdenum Cofactor Synthesis C ccrud_RS05780 PF04055 Radical SAM superfamily ccrud_RS05785 PF00501 AMP-binding enzyme ccrud_RS05785 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS05790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ccrud_RS05790 PF07498 Rho termination factor, N-terminal domain ccrud_RS05790 PF07497 Rho termination factor, RNA-binding domain ccrud_RS05790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ccrud_RS05790 PF07498 Rho termination factor, N-terminal domain ccrud_RS05790 PF07497 Rho termination factor, RNA-binding domain ccrud_RS05795 PF03462 PCRF domain ccrud_RS05795 PF00472 RF-1 domain ccrud_RS05800 PF17827 PrmC N-terminal domain ccrud_RS05800 PF05175 Methyltransferase small domain ccrud_RS05805 PF01300 Telomere recombination ccrud_RS05810 PF00953 Glycosyl transferase family 4 ccrud_RS05820 PF00119 ATP synthase A chain ccrud_RS05825 PF00137 ATP synthase subunit C ccrud_RS05830 PF00430 ATP synthase B/B' CF(0) ccrud_RS05835 PF00213 ATP synthase delta (OSCP) subunit ccrud_RS05840 PF02874 ATP synthase alpha/beta family, beta-barrel domain ccrud_RS05840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ccrud_RS05840 PF00306 ATP synthase alpha/beta chain, C terminal domain ccrud_RS05845 PF00231 ATP synthase ccrud_RS05850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ccrud_RS05850 PF02874 ATP synthase alpha/beta family, beta-barrel domain ccrud_RS05855 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ccrud_RS05865 PF01939 Endonuclease NucS ccrud_RS05875 PF01910 Thiamine-binding protein ccrud_RS05880 PF00085 Thioredoxin ccrud_RS05885 PF00128 Alpha amylase, catalytic domain ccrud_RS05885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ccrud_RS05885 PF02806 Alpha amylase, C-terminal all-beta domain ccrud_RS05890 PF11896 Domain of unknown function (DUF3416) ccrud_RS05895 PF00005 ABC transporter ccrud_RS05905 PF18096 THUMP domain-like ccrud_RS05910 PF01012 Electron transfer flavoprotein domain ccrud_RS05915 PF00766 Electron transfer flavoprotein FAD-binding domain ccrud_RS05915 PF01012 Electron transfer flavoprotein domain ccrud_RS05920 PF00266 Aminotransferase class-V ccrud_RS05935 PF01381 Helix-turn-helix ccrud_RS05970 PF07690 Major Facilitator Superfamily ccrud_RS05980 PF00533 BRCA1 C Terminus (BRCT) domain ccrud_RS05980 PF01653 NAD-dependent DNA ligase adenylation domain ccrud_RS05980 PF03120 NAD-dependent DNA ligase OB-fold domain ccrud_RS05980 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ccrud_RS05980 PF12826 Helix-hairpin-helix motif ccrud_RS05995 PF02686 Glu-tRNAGln amidotransferase C subunit ccrud_RS06000 PF01425 Amidase ccrud_RS06015 PF00365 Phosphofructokinase ccrud_RS06020 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS06025 PF00005 ABC transporter ccrud_RS06030 PF02653 Branched-chain amino acid transport system / permease component ccrud_RS06035 PF13407 Periplasmic binding protein domain ccrud_RS06040 PF05025 RbsD / FucU transport protein family ccrud_RS06050 PF01758 Sodium Bile acid symporter family ccrud_RS06055 PF02934 GatB/GatE catalytic domain ccrud_RS06055 PF02637 GatB domain ccrud_RS06065 PF00248 Aldo/keto reductase family ccrud_RS06070 PF01810 LysE type translocator ccrud_RS06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS06075 PF03466 LysR substrate binding domain ccrud_RS06080 PF13409 Glutathione S-transferase, N-terminal domain ccrud_RS06095 PF00920 Dehydratase family ccrud_RS06105 PF00924 Mechanosensitive ion channel ccrud_RS06110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ccrud_RS06110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ccrud_RS06110 PF00205 Thiamine pyrophosphate enzyme, central domain ccrud_RS06115 PF01842 ACT domain ccrud_RS06115 PF10369 Small subunit of acetolactate synthase ccrud_RS06120 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ccrud_RS06120 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ccrud_RS06125 PF01545 Cation efflux family ccrud_RS06125 PF16916 Dimerisation domain of Zinc Transporter ccrud_RS06140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ccrud_RS06140 PF01842 ACT domain ccrud_RS06140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ccrud_RS06150 PF00180 Isocitrate/isopropylmalate dehydrogenase ccrud_RS06160 PF00478 IMP dehydrogenase / GMP reductase domain ccrud_RS06160 PF00571 CBS domain ccrud_RS06170 PF01557 Fumarylacetoacetate (FAA) hydrolase family ccrud_RS06180 PF00425 chorismate binding enzyme ccrud_RS06185 PF00749 tRNA synthetases class I (E and Q), catalytic domain ccrud_RS06190 PF13443 Cro/C1-type HTH DNA-binding domain ccrud_RS06305 PF12161 HsdM N-terminal domain ccrud_RS06305 PF02384 N-6 DNA Methylase ccrud_RS06310 PF01420 Type I restriction modification DNA specificity domain ccrud_RS06315 PF18766 SWI2/SNF2 ATPase ccrud_RS06315 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ccrud_RS06315 PF12008 Type I restriction and modification enzyme - subunit R C terminal ccrud_RS06325 PF12705 PD-(D/E)XK nuclease superfamily ccrud_RS06325 PF00580 UvrD/REP helicase N-terminal domain ccrud_RS06325 PF13361 UvrD-like helicase C-terminal domain ccrud_RS06335 PF10431 C-terminal, D2-small domain, of ClpB protein ccrud_RS06335 PF17871 AAA lid domain ccrud_RS06335 PF07724 AAA domain (Cdc48 subfamily) ccrud_RS06335 PF00004 ATPase family associated with various cellular activities (AAA) ccrud_RS06335 PF02861 Clp amino terminal domain, pathogenicity island component ccrud_RS06345 PF07963 Prokaryotic N-terminal methylation motif ccrud_RS06345 PF00114 Pilin (bacterial filament) ccrud_RS06355 PF00005 ABC transporter ccrud_RS06375 PF07859 alpha/beta hydrolase fold ccrud_RS06395 PF01425 Amidase ccrud_RS06400 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS06400 PF00072 Response regulator receiver domain ccrud_RS06405 PF00083 Sugar (and other) transporter ccrud_RS06405 PF08946 Osmosensory transporter coiled coil ccrud_RS06410 PF02824 TGS domain ccrud_RS06410 PF13291 ACT domain ccrud_RS06410 PF04607 Region found in RelA / SpoT proteins ccrud_RS06420 PF00330 Aconitase family (aconitate hydratase) ccrud_RS06425 PF00694 Aconitase C-terminal domain ccrud_RS06430 PF12728 Helix-turn-helix domain ccrud_RS06440 PF00293 NUDIX domain ccrud_RS06440 PF00300 Histidine phosphatase superfamily (branch 1) ccrud_RS06445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ccrud_RS06445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ccrud_RS06450 PF07478 D-ala D-ala ligase C-terminus ccrud_RS06450 PF01820 D-ala D-ala ligase N-terminus ccrud_RS06460 PF02769 AIR synthase related protein, C-terminal domain ccrud_RS06460 PF00586 AIR synthase related protein, N-terminal domain ccrud_RS06465 PF03167 Uracil DNA glycosylase superfamily ccrud_RS06470 PF13684 Dihydroxyacetone kinase family ccrud_RS06470 PF02734 DAK2 domain ccrud_RS06475 PF00271 Helicase conserved C-terminal domain ccrud_RS06475 PF17191 RecG wedge domain ccrud_RS06475 PF00270 DEAD/DEAH box helicase ccrud_RS06490 PF01467 Cytidylyltransferase-like ccrud_RS06505 PF00005 ABC transporter ccrud_RS06510 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS06515 PF00497 Bacterial extracellular solute-binding proteins, family 3 ccrud_RS06535 PF00476 DNA polymerase family A ccrud_RS06535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ccrud_RS06535 PF01367 5'-3' exonuclease, C-terminal SAM fold ccrud_RS06540 PF01209 ubiE/COQ5 methyltransferase family ccrud_RS06545 PF00575 S1 RNA binding domain ccrud_RS06550 PF02378 Phosphotransferase system, EIIC ccrud_RS06550 PF00367 phosphotransferase system, EIIB ccrud_RS06550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ccrud_RS06555 PF01121 Dephospho-CoA kinase ccrud_RS06570 PF00271 Helicase conserved C-terminal domain ccrud_RS06570 PF17757 UvrB interaction domain ccrud_RS06570 PF04851 Type III restriction enzyme, res subunit ccrud_RS06570 PF12344 Ultra-violet resistance protein B ccrud_RS06570 PF02151 UvrB/uvrC motif ccrud_RS06575 PF00582 Universal stress protein family ccrud_RS06580 PF01638 HxlR-like helix-turn-helix ccrud_RS06585 PF05368 NmrA-like family ccrud_RS06590 PF13538 UvrD-like helicase C-terminal domain ccrud_RS06600 PF16123 Hydroxyacylglutathione hydrolase C-terminus ccrud_RS06600 PF00753 Metallo-beta-lactamase superfamily ccrud_RS06605 PF17755 UvrA DNA-binding domain ccrud_RS06605 PF00005 ABC transporter ccrud_RS06605 PF17760 UvrA interaction domain ccrud_RS06615 PF00707 Translation initiation factor IF-3, C-terminal domain ccrud_RS06615 PF05198 Translation initiation factor IF-3, N-terminal domain ccrud_RS06620 PF01632 Ribosomal protein L35 ccrud_RS06625 PF00453 Ribosomal protein L20 ccrud_RS06630 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS06635 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS06645 PF17912 MalK OB fold domain ccrud_RS06645 PF00005 ABC transporter ccrud_RS06655 PF00588 SpoU rRNA Methylase family ccrud_RS06655 PF08032 RNA 2'-O ribose methyltransferase substrate binding ccrud_RS06660 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ccrud_RS06660 PF01409 tRNA synthetases class II core domain (F) ccrud_RS06665 PF01588 Putative tRNA binding domain ccrud_RS06665 PF03147 Ferredoxin-fold anticodon binding domain ccrud_RS06665 PF03484 tRNA synthetase B5 domain ccrud_RS06665 PF03483 B3/4 domain ccrud_RS06665 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ccrud_RS06675 PF01757 Acyltransferase family ccrud_RS06685 PF01118 Semialdehyde dehydrogenase, NAD binding domain ccrud_RS06685 PF02774 Semialdehyde dehydrogenase, dimerisation domain ccrud_RS06690 PF01960 ArgJ family ccrud_RS06695 PF00696 Amino acid kinase family ccrud_RS06700 PF00202 Aminotransferase class-III ccrud_RS06705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ccrud_RS06705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ccrud_RS06710 PF02863 Arginine repressor, C-terminal domain ccrud_RS06710 PF01316 Arginine repressor, DNA binding domain ccrud_RS06715 PF00764 Arginosuccinate synthase ccrud_RS06720 PF14698 Argininosuccinate lyase C-terminal ccrud_RS06720 PF00206 Lyase ccrud_RS06740 PF03966 Trm112p-like protein ccrud_RS06745 PF00579 tRNA synthetases class I (W and Y) ccrud_RS06770 PF13344 Haloacid dehalogenase-like hydrolase ccrud_RS06770 PF18407 GCN5-related N-acetyltransferase like domain ccrud_RS06775 PF01728 FtsJ-like methyltransferase ccrud_RS06775 PF01479 S4 domain ccrud_RS06780 PF01513 ATP-NAD kinase ccrud_RS06785 PF02463 RecF/RecN/SMC N terminal domain ccrud_RS06800 PF00117 Glutamine amidotransferase class-I ccrud_RS06800 PF06418 CTP synthase N-terminus ccrud_RS06805 PF00293 NUDIX domain ccrud_RS06810 PF00589 Phage integrase family ccrud_RS06810 PF02899 Phage integrase, N-terminal SAM-like domain ccrud_RS06815 PF13614 AAA domain ccrud_RS06820 PF02616 Segregation and condensation protein ScpA ccrud_RS06830 PF00581 Rhodanese-like domain ccrud_RS06835 PF04079 Segregation and condensation complex subunit ScpB ccrud_RS06840 PF00849 RNA pseudouridylate synthase ccrud_RS06840 PF01479 S4 domain ccrud_RS06845 PF02224 Cytidylate kinase ccrud_RS06850 PF01926 50S ribosome-binding GTPase ccrud_RS06850 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ccrud_RS06895 PF00005 ABC transporter ccrud_RS06925 PF08241 Methyltransferase domain ccrud_RS06930 PF00005 ABC transporter ccrud_RS06930 PF00664 ABC transporter transmembrane region ccrud_RS06935 PF00005 ABC transporter ccrud_RS06935 PF00664 ABC transporter transmembrane region ccrud_RS06940 PF02535 ZIP Zinc transporter ccrud_RS06945 PF00999 Sodium/hydrogen exchanger family ccrud_RS06955 PF02810 SEC-C motif ccrud_RS06965 PF07516 SecA Wing and Scaffold domain ccrud_RS06965 PF01043 SecA preprotein cross-linking domain ccrud_RS06965 PF07517 SecA DEAD-like domain ccrud_RS06970 PF00498 FHA domain ccrud_RS06975 PF00376 MerR family regulatory protein ccrud_RS06985 PF13411 MerR HTH family regulatory protein ccrud_RS06990 PF01037 Lrp/AsnC ligand binding domain ccrud_RS07010 PF00571 CBS domain ccrud_RS07010 PF01595 Cyclin M transmembrane N-terminal domain ccrud_RS07015 PF01595 Cyclin M transmembrane N-terminal domain ccrud_RS07015 PF03471 Transporter associated domain ccrud_RS07015 PF00571 CBS domain ccrud_RS07020 PF00271 Helicase conserved C-terminal domain ccrud_RS07020 PF00270 DEAD/DEAH box helicase ccrud_RS07025 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS07025 PF16295 Tetracyclin repressor-like, C-terminal domain ccrud_RS07030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ccrud_RS07040 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ccrud_RS07040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ccrud_RS07045 PF03061 Thioesterase superfamily ccrud_RS07055 PF00005 ABC transporter ccrud_RS07070 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS07075 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS07080 PF00005 ABC transporter ccrud_RS07095 PF08543 Phosphomethylpyrimidine kinase ccrud_RS07095 PF02581 Thiamine monophosphate synthase ccrud_RS07095 PF03070 TENA/THI-4/PQQC family ccrud_RS07100 PF02110 Hydroxyethylthiazole kinase family ccrud_RS07105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ccrud_RS07105 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS07115 PF07690 Major Facilitator Superfamily ccrud_RS07115 PF00083 Sugar (and other) transporter ccrud_RS07120 PF00156 Phosphoribosyl transferase domain ccrud_RS07130 PF02659 Putative manganese efflux pump ccrud_RS07150 PF00916 Sulfate permease family ccrud_RS07150 PF01740 STAS domain ccrud_RS07170 PF13397 RNA polymerase-binding protein ccrud_RS07175 PF00535 Glycosyl transferase family 2 ccrud_RS07180 PF00535 Glycosyl transferase family 2 ccrud_RS07180 PF00795 Carbon-nitrogen hydrolase ccrud_RS07200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ccrud_RS07215 PF00106 short chain dehydrogenase ccrud_RS07220 PF01321 Creatinase/Prolidase N-terminal domain ccrud_RS07220 PF00557 Metallopeptidase family M24 ccrud_RS07230 PF00271 Helicase conserved C-terminal domain ccrud_RS07230 PF08148 DSHCT (NUC185) domain ccrud_RS07230 PF00270 DEAD/DEAH box helicase ccrud_RS07235 PF00902 Sec-independent protein translocase protein (TatC) ccrud_RS07240 PF02416 mttA/Hcf106 family ccrud_RS07245 PF13280 WYL domain ccrud_RS07250 PF13280 WYL domain ccrud_RS07255 PF03136 Pup-ligase protein ccrud_RS07260 PF05639 Pup-like protein ccrud_RS07265 PF03136 Pup-ligase protein ccrud_RS07270 PF17758 Proteasomal ATPase OB N-terminal domain ccrud_RS07270 PF16450 Proteasomal ATPase OB C-terminal domain ccrud_RS07270 PF00004 ATPase family associated with various cellular activities (AAA) ccrud_RS07275 PF08704 tRNA methyltransferase complex GCD14 subunit ccrud_RS07280 PF02127 Aminopeptidase I zinc metalloprotease (M18) ccrud_RS07295 PF07690 Major Facilitator Superfamily ccrud_RS07300 PF00206 Lyase ccrud_RS07300 PF10415 Fumarase C C-terminus ccrud_RS07305 PF08029 HisG, C-terminal domain ccrud_RS07305 PF01634 ATP phosphoribosyltransferase ccrud_RS07310 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ccrud_RS07315 PF13419 Haloacid dehalogenase-like hydrolase ccrud_RS07320 PF02607 B12 binding domain ccrud_RS07320 PF02965 Vitamin B12 dependent methionine synthase, activation domain ccrud_RS07320 PF02574 Homocysteine S-methyltransferase ccrud_RS07320 PF00809 Pterin binding enzyme ccrud_RS07320 PF02310 B12 binding domain ccrud_RS07335 PF01758 Sodium Bile acid symporter family ccrud_RS07340 PF01451 Low molecular weight phosphotyrosine protein phosphatase ccrud_RS07350 PF01381 Helix-turn-helix ccrud_RS07375 PF01406 tRNA synthetases class I (C) catalytic domain ccrud_RS07380 PF02673 Bacitracin resistance protein BacA ccrud_RS07385 PF00248 Aldo/keto reductase family ccrud_RS07395 PF01180 Dihydroorotate dehydrogenase ccrud_RS07405 PF01161 Phosphatidylethanolamine-binding protein ccrud_RS07410 PF00005 ABC transporter ccrud_RS07410 PF00664 ABC transporter transmembrane region ccrud_RS07415 PF00664 ABC transporter transmembrane region ccrud_RS07415 PF00005 ABC transporter ccrud_RS07445 PF01642 Methylmalonyl-CoA mutase ccrud_RS07445 PF02310 B12 binding domain ccrud_RS07450 PF01642 Methylmalonyl-CoA mutase ccrud_RS07455 PF09335 SNARE associated Golgi protein ccrud_RS07465 PF01145 SPFH domain / Band 7 family ccrud_RS07485 PF00762 Ferrochelatase ccrud_RS07490 PF00877 NlpC/P60 family ccrud_RS07500 PF00330 Aconitase family (aconitate hydratase) ccrud_RS07500 PF00694 Aconitase C-terminal domain ccrud_RS07505 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS07545 PF16326 ABC transporter C-terminal domain ccrud_RS07545 PF00005 ABC transporter ccrud_RS07545 PF12848 ABC transporter ccrud_RS07550 PF01883 Iron-sulfur cluster assembly protein ccrud_RS07555 PF01592 NifU-like N terminal domain ccrud_RS07560 PF00266 Aminotransferase class-V ccrud_RS07565 PF00005 ABC transporter ccrud_RS07570 PF01458 Uncharacterized protein family (UPF0051) ccrud_RS07575 PF01458 Uncharacterized protein family (UPF0051) ccrud_RS07590 PF00005 ABC transporter ccrud_RS07605 PF00698 Acyl transferase domain ccrud_RS07605 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS07605 PF00550 Phosphopantetheine attachment site ccrud_RS07605 PF14765 Polyketide synthase dehydratase ccrud_RS07605 PF08659 KR domain ccrud_RS07610 PF01040 UbiA prenyltransferase family ccrud_RS07615 PF02779 Transketolase, pyrimidine binding domain ccrud_RS07615 PF02780 Transketolase, C-terminal domain ccrud_RS07615 PF00456 Transketolase, thiamine diphosphate binding domain ccrud_RS07620 PF00923 Transaldolase/Fructose-6-phosphate aldolase ccrud_RS07625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ccrud_RS07625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ccrud_RS07635 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ccrud_RS07645 PF02423 Ornithine cyclodeaminase/mu-crystallin family ccrud_RS07650 PF00909 Ammonium Transporter Family ccrud_RS07655 PF03840 Preprotein translocase SecG subunit ccrud_RS07660 PF00311 Phosphoenolpyruvate carboxylase ccrud_RS07665 PF00121 Triosephosphate isomerase ccrud_RS07670 PF00162 Phosphoglycerate kinase ccrud_RS07675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ccrud_RS07675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ccrud_RS07680 PF02650 WhiA C-terminal HTH domain ccrud_RS07680 PF10298 WhiA N-terminal LAGLIDADG-like domain ccrud_RS07680 PF14527 WhiA LAGLIDADG-like domain ccrud_RS07685 PF01933 Uncharacterised protein family UPF0052 ccrud_RS07690 PF03668 P-loop ATPase protein family ccrud_RS07695 PF08459 UvrC Helix-hairpin-helix N-terminal ccrud_RS07695 PF02151 UvrB/uvrC motif ccrud_RS07695 PF01541 GIY-YIG catalytic domain ccrud_RS07705 PF00885 6,7-dimethyl-8-ribityllumazine synthase ccrud_RS07710 PF00925 GTP cyclohydrolase II ccrud_RS07710 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ccrud_RS07715 PF00677 Lumazine binding domain ccrud_RS07720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ccrud_RS07720 PF01872 RibD C-terminal domain ccrud_RS07725 PF00834 Ribulose-phosphate 3 epimerase family ccrud_RS07730 PF01189 16S rRNA methyltransferase RsmB/F ccrud_RS07730 PF01029 NusB family ccrud_RS07735 PF02911 Formyl transferase, C-terminal domain ccrud_RS07735 PF00551 Formyl transferase ccrud_RS07740 PF01327 Polypeptide deformylase ccrud_RS07745 PF17764 3′ DNA-binding domain (3′BD) ccrud_RS07750 PF02772 S-adenosylmethionine synthetase, central domain ccrud_RS07750 PF00438 S-adenosylmethionine synthetase, N-terminal domain ccrud_RS07750 PF02773 S-adenosylmethionine synthetase, C-terminal domain ccrud_RS07755 PF02441 Flavoprotein ccrud_RS07755 PF04127 DNA / pantothenate metabolism flavoprotein ccrud_RS07760 PF01192 RNA polymerase Rpb6 ccrud_RS07765 PF00625 Guanylate kinase ccrud_RS07775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ccrud_RS07780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ccrud_RS07780 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ccrud_RS07780 PF02142 MGS-like domain ccrud_RS07785 PF00117 Glutamine amidotransferase class-I ccrud_RS07785 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ccrud_RS07790 PF01979 Amidohydrolase family ccrud_RS07795 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ccrud_RS07795 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ccrud_RS07800 PF00156 Phosphoribosyl transferase domain ccrud_RS07805 PF01370 NAD dependent epimerase/dehydratase family ccrud_RS07805 PF08338 Domain of unknown function (DUF1731) ccrud_RS07820 PF01029 NusB family ccrud_RS07825 PF09285 Elongation factor P, C-terminal ccrud_RS07825 PF08207 Elongation factor P (EF-P) KOW-like domain ccrud_RS07825 PF01132 Elongation factor P (EF-P) OB domain ccrud_RS07830 PF00557 Metallopeptidase family M24 ccrud_RS07830 PF01321 Creatinase/Prolidase N-terminal domain ccrud_RS07835 PF13333 Integrase core domain ccrud_RS07835 PF00665 Integrase core domain ccrud_RS07835 PF13276 HTH-like domain ccrud_RS07845 PF01761 3-dehydroquinate synthase ccrud_RS07850 PF01202 Shikimate kinase ccrud_RS07855 PF01264 Chorismate synthase ccrud_RS07875 PF01032 FecCD transport family ccrud_RS07885 PF00005 ABC transporter ccrud_RS07890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ccrud_RS07890 PF08501 Shikimate dehydrogenase substrate binding domain ccrud_RS07890 PF01488 Shikimate / quinate 5-dehydrogenase ccrud_RS07895 PF02618 YceG-like family ccrud_RS07900 PF03652 Holliday junction resolvase ccrud_RS07905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ccrud_RS07905 PF01411 tRNA synthetases class II (A) ccrud_RS07905 PF02272 DHHA1 domain ccrud_RS07910 PF12002 MgsA AAA+ ATPase C terminal ccrud_RS07910 PF16193 AAA C-terminal domain ccrud_RS07910 PF00004 ATPase family associated with various cellular activities (AAA) ccrud_RS07920 PF01336 OB-fold nucleic acid binding domain ccrud_RS07920 PF00152 tRNA synthetases class II (D, K and N) ccrud_RS07920 PF02938 GAD domain ccrud_RS07925 PF04228 Putative neutral zinc metallopeptidase ccrud_RS07930 PF04434 SWIM zinc finger ccrud_RS07930 PF00176 SNF2 family N-terminal domain ccrud_RS07930 PF00271 Helicase conserved C-terminal domain ccrud_RS07940 PF00005 ABC transporter ccrud_RS07955 PF00296 Luciferase-like monooxygenase ccrud_RS07960 PF03358 NADPH-dependent FMN reductase ccrud_RS07965 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ccrud_RS07965 PF01266 FAD dependent oxidoreductase ccrud_RS07970 PF03129 Anticodon binding domain ccrud_RS07970 PF13393 Histidyl-tRNA synthetase ccrud_RS07975 PF00753 Metallo-beta-lactamase superfamily ccrud_RS07980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ccrud_RS07995 PF13291 ACT domain ccrud_RS07995 PF02824 TGS domain ccrud_RS07995 PF04607 Region found in RelA / SpoT proteins ccrud_RS08000 PF00156 Phosphoribosyl transferase domain ccrud_RS08005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS08010 PF07549 SecD/SecF GG Motif ccrud_RS08010 PF02355 Protein export membrane protein ccrud_RS08015 PF02355 Protein export membrane protein ccrud_RS08015 PF07549 SecD/SecF GG Motif ccrud_RS08020 PF02699 Preprotein translocase subunit ccrud_RS08025 PF05491 RuvB C-terminal winged helix domain ccrud_RS08025 PF05496 Holliday junction DNA helicase RuvB P-loop domain ccrud_RS08025 PF17864 RuvB AAA lid domain ccrud_RS08030 PF07499 RuvA, C-terminal domain ccrud_RS08030 PF01330 RuvA N terminal domain ccrud_RS08035 PF02075 Crossover junction endodeoxyribonuclease RuvC ccrud_RS08040 PF01709 Transcriptional regulator ccrud_RS08065 PF13439 Glycosyltransferase Family 4 ccrud_RS08070 PF03279 Bacterial lipid A biosynthesis acyltransferase ccrud_RS08075 PF01066 CDP-alcohol phosphatidyltransferase ccrud_RS08080 PF01230 HIT domain ccrud_RS08085 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ccrud_RS08085 PF03129 Anticodon binding domain ccrud_RS08085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ccrud_RS08090 PF04261 Dyp-type peroxidase family ccrud_RS08090 PF10518 TAT (twin-arginine translocation) pathway signal sequence ccrud_RS08095 PF04314 Copper chaperone PCu(A)C ccrud_RS08140 PF00939 Sodium:sulfate symporter transmembrane region ccrud_RS08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS08145 PF03466 LysR substrate binding domain ccrud_RS08150 PF00180 Isocitrate/isopropylmalate dehydrogenase ccrud_RS08155 PF02595 Glycerate kinase family ccrud_RS08170 PF09594 Glycosyltransferase family 87 ccrud_RS08175 PF01641 SelR domain ccrud_RS08180 PF06778 Chlorite dismutase ccrud_RS08190 PF01612 3'-5' exonuclease ccrud_RS08190 PF00570 HRDC domain ccrud_RS08195 PF02779 Transketolase, pyrimidine binding domain ccrud_RS08195 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ccrud_RS08195 PF02780 Transketolase, C-terminal domain ccrud_RS08200 PF05958 tRNA (Uracil-5-)-methyltransferase ccrud_RS08200 PF01938 TRAM domain ccrud_RS08210 PF00692 dUTPase ccrud_RS08225 PF00459 Inositol monophosphatase family ccrud_RS08230 PF00480 ROK family ccrud_RS08235 PF04539 Sigma-70 region 3 ccrud_RS08235 PF04542 Sigma-70 region 2 ccrud_RS08235 PF00140 Sigma-70 factor, region 1.2 ccrud_RS08235 PF04545 Sigma-70, region 4 ccrud_RS08240 PF04235 Protein of unknown function (DUF418) ccrud_RS08250 PF04851 Type III restriction enzyme, res subunit ccrud_RS08265 PF17827 PrmC N-terminal domain ccrud_RS08265 PF13847 Methyltransferase domain ccrud_RS08270 PF02580 D-Tyr-tRNA(Tyr) deacylase ccrud_RS08275 PF00140 Sigma-70 factor, region 1.2 ccrud_RS08275 PF04545 Sigma-70, region 4 ccrud_RS08275 PF04542 Sigma-70 region 2 ccrud_RS08275 PF04539 Sigma-70 region 3 ccrud_RS08280 PF01325 Iron dependent repressor, N-terminal DNA binding domain ccrud_RS08280 PF18357 Diphteria toxin repressor SH3 domain ccrud_RS08280 PF02742 Iron dependent repressor, metal binding and dimerisation domain ccrud_RS08285 PF01370 NAD dependent epimerase/dehydratase family ccrud_RS08300 PF00271 Helicase conserved C-terminal domain ccrud_RS08300 PF00270 DEAD/DEAH box helicase ccrud_RS08300 PF08148 DSHCT (NUC185) domain ccrud_RS08305 PF03466 LysR substrate binding domain ccrud_RS08305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS08315 PF04408 Helicase associated domain (HA2) ccrud_RS08315 PF00270 DEAD/DEAH box helicase ccrud_RS08315 PF00271 Helicase conserved C-terminal domain ccrud_RS08315 PF11898 Domain of unknown function (DUF3418) ccrud_RS08315 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ccrud_RS08320 PF03477 ATP cone domain ccrud_RS08330 PF00717 Peptidase S24-like ccrud_RS08330 PF01726 LexA DNA binding domain ccrud_RS08335 PF00455 DeoR C terminal sensor domain ccrud_RS08335 PF08220 DeoR-like helix-turn-helix domain ccrud_RS08345 PF00391 PEP-utilising enzyme, mobile domain ccrud_RS08345 PF05524 PEP-utilising enzyme, N-terminal ccrud_RS08345 PF02896 PEP-utilising enzyme, TIM barrel domain ccrud_RS08350 PF00455 DeoR C terminal sensor domain ccrud_RS08350 PF08220 DeoR-like helix-turn-helix domain ccrud_RS08355 PF00294 pfkB family carbohydrate kinase ccrud_RS08360 PF02378 Phosphotransferase system, EIIC ccrud_RS08360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ccrud_RS08375 PF00860 Permease family ccrud_RS08380 PF16360 GTP-binding GTPase Middle Region ccrud_RS08380 PF13167 GTP-binding GTPase N-terminal ccrud_RS08380 PF01926 50S ribosome-binding GTPase ccrud_RS08395 PF01678 Diaminopimelate epimerase ccrud_RS08410 PF03993 Domain of Unknown Function (DUF349) ccrud_RS08425 PF00919 Uncharacterized protein family UPF0004 ccrud_RS08425 PF04055 Radical SAM superfamily ccrud_RS08430 PF00005 ABC transporter ccrud_RS08435 PF00497 Bacterial extracellular solute-binding proteins, family 3 ccrud_RS08440 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS08445 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS08450 PF02631 RecX family ccrud_RS08455 PF00154 recA bacterial DNA recombination protein ccrud_RS08465 PF02632 BioY family ccrud_RS08470 PF00005 ABC transporter ccrud_RS08475 PF02361 Cobalt transport protein ccrud_RS08480 PF04012 PspA/IM30 family ccrud_RS08490 PF02464 Competence-damaged protein ccrud_RS08490 PF18146 Damage-inducible protein CinA KH domain ccrud_RS08490 PF00994 Probable molybdopterin binding domain ccrud_RS08495 PF01066 CDP-alcohol phosphatidyltransferase ccrud_RS08505 PF03741 Integral membrane protein TerC family ccrud_RS08510 PF09397 Ftsk gamma domain ccrud_RS08510 PF01580 FtsK/SpoIIIE family ccrud_RS08510 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ccrud_RS08510 PF17854 FtsK alpha domain ccrud_RS08525 PF01970 Tripartite tricarboxylate transporter TctA family ccrud_RS08535 PF03401 Tripartite tricarboxylate transporter family receptor ccrud_RS08540 PF14537 Cytochrome c3 ccrud_RS08540 PF00890 FAD binding domain ccrud_RS08545 PF07729 FCD domain ccrud_RS08545 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS08550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ccrud_RS08550 PF12706 Beta-lactamase superfamily domain ccrud_RS08550 PF17770 Ribonuclease J C-terminal domain ccrud_RS08555 PF00701 Dihydrodipicolinate synthetase family ccrud_RS08560 PF02511 Thymidylate synthase complementing protein ccrud_RS08565 PF01113 Dihydrodipicolinate reductase, N-terminus ccrud_RS08565 PF05173 Dihydrodipicolinate reductase, C-terminus ccrud_RS08575 PF01138 3' exoribonuclease family, domain 1 ccrud_RS08575 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ccrud_RS08575 PF00575 S1 RNA binding domain ccrud_RS08575 PF00013 KH domain ccrud_RS08580 PF00312 Ribosomal protein S15 ccrud_RS08585 PF01156 Inosine-uridine preferring nucleoside hydrolase ccrud_RS08590 PF01687 Riboflavin kinase ccrud_RS08590 PF06574 FAD synthetase ccrud_RS08595 PF09142 tRNA Pseudouridine synthase II, C terminal ccrud_RS08595 PF16198 tRNA pseudouridylate synthase B C-terminal domain ccrud_RS08595 PF01509 TruB family pseudouridylate synthase (N terminal domain) ccrud_RS08600 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ccrud_RS08600 PF01648 4'-phosphopantetheinyl transferase superfamily ccrud_RS08605 PF00149 Calcineurin-like phosphoesterase ccrud_RS08615 PF02272 DHHA1 domain ccrud_RS08615 PF01368 DHH family ccrud_RS08620 PF02033 Ribosome-binding factor A ccrud_RS08625 PF11987 Translation-initiation factor 2 ccrud_RS08625 PF04760 Translation initiation factor IF-2, N-terminal region ccrud_RS08625 PF00009 Elongation factor Tu GTP binding domain ccrud_RS08635 PF13184 NusA-like KH domain ccrud_RS08635 PF08529 NusA N-terminal domain ccrud_RS08640 PF17384 RimP C-terminal SH3 domain ccrud_RS08640 PF02576 RimP N-terminal domain ccrud_RS08650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS08655 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS08660 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS08660 PF12911 N-terminal TM domain of oligopeptide transport permease C ccrud_RS08665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ccrud_RS08665 PF00005 ABC transporter ccrud_RS08670 PF04073 Aminoacyl-tRNA editing domain ccrud_RS08670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ccrud_RS08670 PF03129 Anticodon binding domain ccrud_RS08675 PF03883 Peroxide stress protein YaaA ccrud_RS08680 PF07728 AAA domain (dynein-related subfamily) ccrud_RS08680 PF13519 von Willebrand factor type A domain ccrud_RS08680 PF17863 AAA lid domain ccrud_RS08685 PF07728 AAA domain (dynein-related subfamily) ccrud_RS08685 PF17863 AAA lid domain ccrud_RS08685 PF13519 von Willebrand factor type A domain ccrud_RS08690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ccrud_RS08695 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ccrud_RS08705 PF06039 Malate:quinone oxidoreductase (Mqo) ccrud_RS08715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ccrud_RS08715 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS08735 PF00557 Metallopeptidase family M24 ccrud_RS08745 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS08745 PF00072 Response regulator receiver domain ccrud_RS08750 PF00672 HAMP domain ccrud_RS08750 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ccrud_RS08750 PF07730 Histidine kinase ccrud_RS08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS08755 PF02687 FtsX-like permease family ccrud_RS08760 PF00005 ABC transporter ccrud_RS08765 PF04551 GcpE protein ccrud_RS08770 PF02163 Peptidase family M50 ccrud_RS08770 PF17820 PDZ domain ccrud_RS08775 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ccrud_RS08775 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ccrud_RS08775 PF13288 DXP reductoisomerase C-terminal domain ccrud_RS08780 PF10939 Protein of unknown function (DUF2631) ccrud_RS08790 PF00005 ABC transporter ccrud_RS08795 PF04055 Radical SAM superfamily ccrud_RS08810 PF01765 Ribosome recycling factor ccrud_RS08815 PF00696 Amino acid kinase family ccrud_RS08820 PF00889 Elongation factor TS ccrud_RS08825 PF00318 Ribosomal protein S2 ccrud_RS08835 PF02899 Phage integrase, N-terminal SAM-like domain ccrud_RS08835 PF00589 Phage integrase family ccrud_RS08840 PF02481 DNA recombination-mediator protein A ccrud_RS08840 PF17782 DprA winged helix domain ccrud_RS08845 PF13335 Magnesium chelatase, subunit ChlI C-terminal ccrud_RS08845 PF01078 Magnesium chelatase, subunit ChlI ccrud_RS08850 PF02021 Uncharacterised protein family UPF0102 ccrud_RS08855 PF10611 Protein of unknown function (DUF2469) ccrud_RS08860 PF01351 Ribonuclease HII ccrud_RS08865 PF10502 Signal peptidase, peptidase S26 ccrud_RS08870 PF01245 Ribosomal protein L19 ccrud_RS08875 PF02581 Thiamine monophosphate synthase ccrud_RS08880 PF01266 FAD dependent oxidoreductase ccrud_RS08880 PF05690 Thiazole biosynthesis protein ThiG ccrud_RS08890 PF05690 Thiazole biosynthesis protein ThiG ccrud_RS08895 PF00899 ThiF family ccrud_RS08900 PF16921 Tex protein YqgF-like domain ccrud_RS08900 PF17674 HHH domain ccrud_RS08900 PF09371 Tex-like protein N-terminal domain ccrud_RS08900 PF00575 S1 RNA binding domain ccrud_RS08905 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS08910 PF00939 Sodium:sulfate symporter transmembrane region ccrud_RS08915 PF00206 Lyase ccrud_RS08915 PF10397 Adenylosuccinate lyase C-terminus ccrud_RS08930 PF01746 tRNA (Guanine-1)-methyltransferase ccrud_RS08940 PF01782 RimM N-terminal domain ccrud_RS08940 PF05239 PRC-barrel domain ccrud_RS08950 PF01638 HxlR-like helix-turn-helix ccrud_RS08960 PF00886 Ribosomal protein S16 ccrud_RS08975 PF00005 ABC transporter ccrud_RS08980 PF02978 Signal peptide binding domain ccrud_RS08980 PF00448 SRP54-type protein, GTPase domain ccrud_RS08980 PF02881 SRP54-type protein, helical bundle domain ccrud_RS08985 PF01966 HD domain ccrud_RS08985 PF01909 Nucleotidyltransferase domain ccrud_RS08990 PF00543 Nitrogen regulatory protein P-II ccrud_RS08995 PF00909 Ammonium Transporter Family ccrud_RS09000 PF00448 SRP54-type protein, GTPase domain ccrud_RS09000 PF02881 SRP54-type protein, helical bundle domain ccrud_RS09010 PF06470 SMC proteins Flexible Hinge Domain ccrud_RS09010 PF02463 RecF/RecN/SMC N terminal domain ccrud_RS09015 PF00708 Acylphosphatase ccrud_RS09035 PF01555 DNA methylase ccrud_RS09070 PF06827 Zinc finger found in FPG and IleRS ccrud_RS09070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ccrud_RS09070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ccrud_RS09075 PF14622 Ribonuclease-III-like ccrud_RS09075 PF00035 Double-stranded RNA binding motif ccrud_RS09090 PF00005 ABC transporter ccrud_RS09090 PF00664 ABC transporter transmembrane region ccrud_RS09095 PF00664 ABC transporter transmembrane region ccrud_RS09095 PF00005 ABC transporter ccrud_RS09100 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ccrud_RS09100 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ccrud_RS09105 PF02595 Glycerate kinase family ccrud_RS09120 PF01546 Peptidase family M20/M25/M40 ccrud_RS09120 PF07687 Peptidase dimerisation domain ccrud_RS09125 PF11897 Protein of unknown function (DUF3417) ccrud_RS09125 PF00343 Carbohydrate phosphorylase ccrud_RS09130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ccrud_RS09135 PF00224 Pyruvate kinase, barrel domain ccrud_RS09135 PF02887 Pyruvate kinase, alpha/beta domain ccrud_RS09140 PF01790 Prolipoprotein diacylglyceryl transferase ccrud_RS09145 PF00218 Indole-3-glycerol phosphate synthase ccrud_RS09155 PF01502 Phosphoribosyl-AMP cyclohydrolase ccrud_RS09160 PF00977 Histidine biosynthesis protein ccrud_RS09165 PF00459 Inositol monophosphatase family ccrud_RS09170 PF00977 Histidine biosynthesis protein ccrud_RS09175 PF00117 Glutamine amidotransferase class-I ccrud_RS09190 PF00475 Imidazoleglycerol-phosphate dehydratase ccrud_RS09195 PF00155 Aminotransferase class I and II ccrud_RS09200 PF00815 Histidinol dehydrogenase ccrud_RS09220 PF08361 MAATS-type transcriptional repressor, C-terminal region ccrud_RS09220 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS09225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ccrud_RS09225 PF00128 Alpha amylase, catalytic domain ccrud_RS09230 PF00005 ABC transporter ccrud_RS09235 PF01032 FecCD transport family ccrud_RS09260 PF00128 Alpha amylase, catalytic domain ccrud_RS09295 PF01205 Uncharacterized protein family UPF0029 ccrud_RS09295 PF09186 Domain of unknown function (DUF1949) ccrud_RS09300 PF00128 Alpha amylase, catalytic domain ccrud_RS09300 PF11941 Domain of unknown function (DUF3459) ccrud_RS09305 PF00585 C-terminal regulatory domain of Threonine dehydratase ccrud_RS09305 PF00291 Pyridoxal-phosphate dependent enzyme ccrud_RS09320 PF14579 Helix-hairpin-helix motif ccrud_RS09320 PF02811 PHP domain ccrud_RS09320 PF07733 Bacterial DNA polymerase III alpha NTPase domain ccrud_RS09320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ccrud_RS09325 PF00892 EamA-like transporter family ccrud_RS09345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ccrud_RS09350 PF00291 Pyridoxal-phosphate dependent enzyme ccrud_RS09360 PF00849 RNA pseudouridylate synthase ccrud_RS09365 PF01252 Signal peptidase (SPase) II ccrud_RS09375 PF00005 ABC transporter ccrud_RS09385 PF00710 Asparaginase, N-terminal ccrud_RS09385 PF17763 Glutaminase/Asparaginase C-terminal domain ccrud_RS09390 PF11799 impB/mucB/samB family C-terminal domain ccrud_RS09390 PF11798 IMS family HHH motif ccrud_RS09390 PF00817 impB/mucB/samB family ccrud_RS09400 PF00376 MerR family regulatory protein ccrud_RS09400 PF09278 MerR, DNA binding ccrud_RS09410 PF08264 Anticodon-binding domain of tRNA ccrud_RS09410 PF00133 tRNA synthetases class I (I, L, M and V) ccrud_RS09415 PF05103 DivIVA protein ccrud_RS09425 PF04472 Cell division protein SepF ccrud_RS09430 PF01168 Alanine racemase, N-terminal domain ccrud_RS09435 PF02578 Multi-copper polyphenol oxidoreductase laccase ccrud_RS09440 PF00091 Tubulin/FtsZ family, GTPase domain ccrud_RS09440 PF12327 FtsZ family, C-terminal domain ccrud_RS09445 PF08478 POTRA domain, FtsQ-type ccrud_RS09450 PF08245 Mur ligase middle domain ccrud_RS09450 PF01225 Mur ligase family, catalytic domain ccrud_RS09450 PF02875 Mur ligase family, glutamate ligase domain ccrud_RS09455 PF03033 Glycosyltransferase family 28 N-terminal domain ccrud_RS09455 PF04101 Glycosyltransferase family 28 C-terminal domain ccrud_RS09460 PF01098 Cell cycle protein ccrud_RS09465 PF08245 Mur ligase middle domain ccrud_RS09470 PF00953 Glycosyl transferase family 4 ccrud_RS09470 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ccrud_RS09475 PF08245 Mur ligase middle domain ccrud_RS09475 PF02875 Mur ligase family, glutamate ligase domain ccrud_RS09475 PF01225 Mur ligase family, catalytic domain ccrud_RS09480 PF01225 Mur ligase family, catalytic domain ccrud_RS09480 PF02875 Mur ligase family, glutamate ligase domain ccrud_RS09480 PF08245 Mur ligase middle domain ccrud_RS09485 PF03717 Penicillin-binding Protein dimerisation domain ccrud_RS09485 PF00905 Penicillin binding protein transpeptidase domain ccrud_RS09495 PF01795 MraW methylase family ccrud_RS09500 PF02381 MraZ protein, putative antitoxin-like ccrud_RS09515 PF00583 Acetyltransferase (GNAT) family ccrud_RS09520 PF02219 Methylenetetrahydrofolate reductase ccrud_RS09525 PF00348 Polyprenyl synthetase ccrud_RS09535 PF18367 Rv2175c C-terminal domain of unknown function ccrud_RS09540 PF00069 Protein kinase domain ccrud_RS09540 PF03793 PASTA domain ccrud_RS09545 PF09594 Glycosyltransferase family 87 ccrud_RS09550 PF09594 Glycosyltransferase family 87 ccrud_RS09555 PF01474 Class-II DAHP synthetase family ccrud_RS09560 PF16473 3' exoribonuclease, RNase T-like ccrud_RS09565 PF09594 Glycosyltransferase family 87 ccrud_RS09585 PF00480 ROK family ccrud_RS09590 PF13439 Glycosyltransferase Family 4 ccrud_RS09590 PF00534 Glycosyl transferases group 1 ccrud_RS09595 PF00877 NlpC/P60 family ccrud_RS09600 PF00877 NlpC/P60 family ccrud_RS09610 PF13631 Cytochrome b(N-terminal)/b6/petB ccrud_RS09615 PF00355 Rieske [2Fe-2S] domain ccrud_RS09620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ccrud_RS09620 PF00034 Cytochrome c ccrud_RS09625 PF00510 Cytochrome c oxidase subunit III ccrud_RS09630 PF12270 Cytochrome c oxidase subunit IV ccrud_RS09635 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ccrud_RS09640 PF13537 Glutamine amidotransferase domain ccrud_RS09640 PF00733 Asparagine synthase ccrud_RS09645 PF01521 Iron-sulphur cluster biosynthesis ccrud_RS09650 PF11241 Protein of unknown function (DUF3043) ccrud_RS09655 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ccrud_RS09660 PF02277 Phosphoribosyltransferase ccrud_RS09665 PF02654 Cobalamin-5-phosphate synthase ccrud_RS09685 PF01494 FAD binding domain ccrud_RS09690 PF00171 Aldehyde dehydrogenase family ccrud_RS09700 PF00106 short chain dehydrogenase ccrud_RS09705 PF01063 Amino-transferase class IV ccrud_RS09710 PF00883 Cytosol aminopeptidase family, catalytic domain ccrud_RS09710 PF02789 Cytosol aminopeptidase family, N-terminal domain ccrud_RS09720 PF02817 e3 binding domain ccrud_RS09720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ccrud_RS09720 PF00364 Biotin-requiring enzyme ccrud_RS09725 PF03099 Biotin/lipoate A/B protein ligase family ccrud_RS09730 PF04055 Radical SAM superfamily ccrud_RS09735 PF13829 Domain of unknown function (DUF4191) ccrud_RS09740 PF02080 TrkA-C domain ccrud_RS09740 PF06826 Predicted Permease Membrane Region ccrud_RS09760 PF00120 Glutamine synthetase, catalytic domain ccrud_RS09760 PF03951 Glutamine synthetase, beta-Grasp domain ccrud_RS09770 PF00293 NUDIX domain ccrud_RS09775 PF00296 Luciferase-like monooxygenase ccrud_RS09785 PF00291 Pyridoxal-phosphate dependent enzyme ccrud_RS09785 PF14821 Threonine synthase N terminus ccrud_RS09810 PF03710 Glutamate-ammonia ligase adenylyltransferase ccrud_RS09810 PF08335 GlnD PII-uridylyltransferase ccrud_RS09815 PF00120 Glutamine synthetase, catalytic domain ccrud_RS09815 PF03951 Glutamine synthetase, beta-Grasp domain ccrud_RS09825 PF01928 CYTH domain ccrud_RS09825 PF05235 CHAD domain ccrud_RS09840 PF00575 S1 RNA binding domain ccrud_RS09840 PF17876 Cold shock domain ccrud_RS09840 PF08461 Ribonuclease R winged-helix domain ccrud_RS09840 PF08206 Ribonuclease B OB domain ccrud_RS09840 PF00773 RNB domain ccrud_RS09845 PF00106 short chain dehydrogenase ccrud_RS09860 PF00300 Histidine phosphatase superfamily (branch 1) ccrud_RS09860 PF13456 Reverse transcriptase-like ccrud_RS09870 PF01784 NIF3 (NGG1p interacting factor 3) ccrud_RS09875 PF13419 Haloacid dehalogenase-like hydrolase ccrud_RS09880 PF01451 Low molecular weight phosphotyrosine protein phosphatase ccrud_RS09885 PF02104 SURF1 family ccrud_RS09895 PF11253 Protein of unknown function (DUF3052) ccrud_RS09900 PF17831 Pyruvate dehydrogenase E1 component middle domain ccrud_RS09900 PF00456 Transketolase, thiamine diphosphate binding domain ccrud_RS09905 PF00005 ABC transporter ccrud_RS09930 PF12146 Serine aminopeptidase, S33 ccrud_RS09935 PF00550 Phosphopantetheine attachment site ccrud_RS09940 PF13344 Haloacid dehalogenase-like hydrolase ccrud_RS09970 PF16655 PhoD-like phosphatase, N-terminal domain ccrud_RS09970 PF09423 PhoD-like phosphatase ccrud_RS09985 PF00723 Glycosyl hydrolases family 15 ccrud_RS09995 PF01807 CHC2 zinc finger ccrud_RS09995 PF10410 DnaB-helicase binding domain of primase ccrud_RS09995 PF08278 DNA primase DnaG DnaB-binding ccrud_RS09995 PF08275 DNA primase catalytic core, N-terminal domain ccrud_RS09995 PF13662 Toprim domain ccrud_RS10010 PF01380 SIS domain ccrud_RS10015 PF08125 Mannitol dehydrogenase C-terminal domain ccrud_RS10015 PF01232 Mannitol dehydrogenase Rossmann domain ccrud_RS10020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ccrud_RS10020 PF02378 Phosphotransferase system, EIIC ccrud_RS10020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ccrud_RS10025 PF01966 HD domain ccrud_RS10025 PF13286 Phosphohydrolase-associated domain ccrud_RS10050 PF03129 Anticodon binding domain ccrud_RS10050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ccrud_RS10055 PF01022 Bacterial regulatory protein, arsR family ccrud_RS10060 PF01475 Ferric uptake regulator family ccrud_RS10075 PF01255 Putative undecaprenyl diphosphate synthase ccrud_RS10080 PF02565 Recombination protein O C terminal ccrud_RS10080 PF11967 Recombination protein O N terminal ccrud_RS10085 PF01926 50S ribosome-binding GTPase ccrud_RS10085 PF07650 KH domain ccrud_RS10090 PF03471 Transporter associated domain ccrud_RS10090 PF00571 CBS domain ccrud_RS10090 PF01595 Cyclin M transmembrane N-terminal domain ccrud_RS10095 PF02130 Uncharacterized protein family UPF0054 ccrud_RS10100 PF02562 PhoH-like protein ccrud_RS10105 PF04452 RNA methyltransferase ccrud_RS10110 PF00226 DnaJ domain ccrud_RS10110 PF01556 DnaJ C terminal domain ccrud_RS10110 PF00684 DnaJ central domain ccrud_RS10115 PF01628 HrcA protein C terminal domain ccrud_RS10120 PF04055 Radical SAM superfamily ccrud_RS10140 PF00501 AMP-binding enzyme ccrud_RS10145 PF02446 4-alpha-glucanotransferase ccrud_RS10150 PF00664 ABC transporter transmembrane region ccrud_RS10150 PF00005 ABC transporter ccrud_RS10160 PF01432 Peptidase family M3 ccrud_RS10165 PF00135 Carboxylesterase family ccrud_RS10170 PF00128 Alpha amylase, catalytic domain ccrud_RS10170 PF16657 Maltogenic Amylase, C-terminal domain ccrud_RS10175 PF18085 Maltokinase N-terminal cap domain ccrud_RS10175 PF01636 Phosphotransferase enzyme family ccrud_RS10180 PF00293 NUDIX domain ccrud_RS10200 PF00155 Aminotransferase class I and II ccrud_RS10205 PF05525 Branched-chain amino acid transport protein ccrud_RS10210 PF00296 Luciferase-like monooxygenase ccrud_RS10220 PF13419 Haloacid dehalogenase-like hydrolase ccrud_RS10225 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10230 PF00005 ABC transporter ccrud_RS10245 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS10245 PF07702 UTRA domain ccrud_RS10260 PF13183 4Fe-4S dicluster domain ccrud_RS10260 PF02913 FAD linked oxidases, C-terminal domain ccrud_RS10260 PF01565 FAD binding domain ccrud_RS10265 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS10265 PF07729 FCD domain ccrud_RS10280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS10285 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10290 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10290 PF12911 N-terminal TM domain of oligopeptide transport permease C ccrud_RS10295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ccrud_RS10295 PF00005 ABC transporter ccrud_RS10300 PF03466 LysR substrate binding domain ccrud_RS10300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS10305 PF03600 Citrate transporter ccrud_RS10320 PF02834 LigT like Phosphoesterase ccrud_RS10325 PF00294 pfkB family carbohydrate kinase ccrud_RS10330 PF01758 Sodium Bile acid symporter family ccrud_RS10335 PF01263 Aldose 1-epimerase ccrud_RS10340 PF01274 Malate synthase ccrud_RS10345 PF00463 Isocitrate lyase family ccrud_RS10360 PF02028 BCCT, betaine/carnitine/choline family transporter ccrud_RS10390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ccrud_RS10395 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ccrud_RS10400 PF03480 Bacterial extracellular solute-binding protein, family 7 ccrud_RS10405 PF00679 Elongation factor G C-terminus ccrud_RS10405 PF00009 Elongation factor Tu GTP binding domain ccrud_RS10405 PF06421 GTP-binding protein LepA C-terminus ccrud_RS10415 PF01649 Ribosomal protein S20 ccrud_RS10420 PF01810 LysE type translocator ccrud_RS10445 PF02645 Uncharacterised protein, DegV family COG1307 ccrud_RS10450 PF00300 Histidine phosphatase superfamily (branch 1) ccrud_RS10460 PF01467 Cytidylyltransferase-like ccrud_RS10470 PF00171 Aldehyde dehydrogenase family ccrud_RS10475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ccrud_RS10480 PF00696 Amino acid kinase family ccrud_RS10480 PF01472 PUA domain ccrud_RS10485 PF01018 GTP1/OBG ccrud_RS10485 PF09269 Domain of unknown function (DUF1967) ccrud_RS10485 PF01926 50S ribosome-binding GTPase ccrud_RS10490 PF00860 Permease family ccrud_RS10495 PF00248 Aldo/keto reductase family ccrud_RS10510 PF01016 Ribosomal L27 protein ccrud_RS10515 PF00829 Ribosomal prokaryotic L21 protein ccrud_RS10520 PF10150 Ribonuclease E/G family ccrud_RS10530 PF02678 Pirin ccrud_RS10530 PF05726 Pirin C-terminal cupin domain ccrud_RS10540 PF00334 Nucleoside diphosphate kinase ccrud_RS10565 PF02875 Mur ligase family, glutamate ligase domain ccrud_RS10565 PF08245 Mur ligase middle domain ccrud_RS10570 PF08264 Anticodon-binding domain of tRNA ccrud_RS10570 PF00133 tRNA synthetases class I (I, L, M and V) ccrud_RS10570 PF10458 Valyl tRNA synthetase tRNA binding arm ccrud_RS10575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS10580 PF00012 Hsp70 protein ccrud_RS10585 PF03641 Possible lysine decarboxylase ccrud_RS10590 PF00056 lactate/malate dehydrogenase, NAD binding domain ccrud_RS10590 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ccrud_RS10595 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS10595 PF08361 MAATS-type transcriptional repressor, C-terminal region ccrud_RS10605 PF00355 Rieske [2Fe-2S] domain ccrud_RS10610 PF00175 Oxidoreductase NAD-binding domain ccrud_RS10610 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS10610 PF00970 Oxidoreductase FAD-binding domain ccrud_RS10615 PF07690 Major Facilitator Superfamily ccrud_RS10625 PF06689 ClpX C4-type zinc finger ccrud_RS10625 PF10431 C-terminal, D2-small domain, of ClpB protein ccrud_RS10625 PF07724 AAA domain (Cdc48 subfamily) ccrud_RS10635 PF01144 Coenzyme A transferase ccrud_RS10640 PF01144 Coenzyme A transferase ccrud_RS10645 PF01614 Bacterial transcriptional regulator ccrud_RS10645 PF09339 IclR helix-turn-helix domain ccrud_RS10650 PF00108 Thiolase, N-terminal domain ccrud_RS10650 PF02803 Thiolase, C-terminal domain ccrud_RS10655 PF12146 Serine aminopeptidase, S33 ccrud_RS10670 PF00206 Lyase ccrud_RS10670 PF10397 Adenylosuccinate lyase C-terminus ccrud_RS10675 PF00775 Dioxygenase ccrud_RS10680 PF00775 Dioxygenase ccrud_RS10680 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ccrud_RS10690 PF02426 Muconolactone delta-isomerase ccrud_RS10695 PF13378 Enolase C-terminal domain-like ccrud_RS10695 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ccrud_RS10700 PF00775 Dioxygenase ccrud_RS10700 PF04444 Catechol dioxygenase N terminus ccrud_RS10705 PF00355 Rieske [2Fe-2S] domain ccrud_RS10705 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ccrud_RS10710 PF00866 Ring hydroxylating beta subunit ccrud_RS10715 PF00175 Oxidoreductase NAD-binding domain ccrud_RS10715 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS10715 PF00970 Oxidoreductase FAD-binding domain ccrud_RS10720 PF00106 short chain dehydrogenase ccrud_RS10725 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS10730 PF07690 Major Facilitator Superfamily ccrud_RS10740 PF00574 Clp protease ccrud_RS10745 PF00574 Clp protease ccrud_RS10750 PF05698 Bacterial trigger factor protein (TF) C-terminus ccrud_RS10750 PF05697 Bacterial trigger factor protein (TF) ccrud_RS10750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ccrud_RS10775 PF02502 Ribose/Galactose Isomerase ccrud_RS10780 PF01323 DSBA-like thioredoxin domain ccrud_RS10785 PF01433 Peptidase family M1 domain ccrud_RS10785 PF11838 ERAP1-like C-terminal domain ccrud_RS10810 PF01593 Flavin containing amine oxidoreductase ccrud_RS10820 PF00815 Histidinol dehydrogenase ccrud_RS10830 PF03328 HpcH/HpaI aldolase/citrate lyase family ccrud_RS10835 PF16657 Maltogenic Amylase, C-terminal domain ccrud_RS10835 PF00128 Alpha amylase, catalytic domain ccrud_RS10840 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS10845 PF00005 ABC transporter ccrud_RS10845 PF17912 MalK OB fold domain ccrud_RS10850 PF00795 Carbon-nitrogen hydrolase ccrud_RS10850 PF00583 Acetyltransferase (GNAT) family ccrud_RS10865 PF00561 alpha/beta hydrolase fold ccrud_RS10870 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10875 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10885 PF00815 Histidinol dehydrogenase ccrud_RS10900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ccrud_RS10900 PF00005 ABC transporter ccrud_RS10905 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10905 PF12911 N-terminal TM domain of oligopeptide transport permease C ccrud_RS10910 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS10915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS10925 PF00202 Aminotransferase class-III ccrud_RS10945 PF09335 SNARE associated Golgi protein ccrud_RS10950 PF00106 short chain dehydrogenase ccrud_RS10960 PF01053 Cys/Met metabolism PLP-dependent enzyme ccrud_RS10965 PF00005 ABC transporter ccrud_RS10970 PF01152 Bacterial-like globin ccrud_RS10995 PF12857 TOBE-like domain ccrud_RS10995 PF00005 ABC transporter ccrud_RS10995 PF17850 CysA C-terminal regulatory domain ccrud_RS11010 PF13416 Bacterial extracellular solute-binding protein ccrud_RS11015 PF13419 Haloacid dehalogenase-like hydrolase ccrud_RS11020 PF07702 UTRA domain ccrud_RS11020 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS11025 PF00005 ABC transporter ccrud_RS11025 PF12848 ABC transporter ccrud_RS11045 PF00245 Alkaline phosphatase ccrud_RS11060 PF00171 Aldehyde dehydrogenase family ccrud_RS11065 PF00107 Zinc-binding dehydrogenase ccrud_RS11065 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS11080 PF02540 NAD synthase ccrud_RS11085 PF00731 AIR carboxylase ccrud_RS11090 PF01969 Protein of unknown function DUF111 ccrud_RS11095 PF01261 Xylose isomerase-like TIM barrel ccrud_RS11100 PF00106 short chain dehydrogenase ccrud_RS11105 PF00929 Exonuclease ccrud_RS11115 PF03734 L,D-transpeptidase catalytic domain ccrud_RS11115 PF17964 Bacterial Ig domain ccrud_RS11130 PF02028 BCCT, betaine/carnitine/choline family transporter ccrud_RS11145 PF04960 Glutaminase ccrud_RS11150 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS11155 PF02614 Glucuronate isomerase ccrud_RS11160 PF08125 Mannitol dehydrogenase C-terminal domain ccrud_RS11160 PF01232 Mannitol dehydrogenase Rossmann domain ccrud_RS11165 PF02614 Glucuronate isomerase ccrud_RS11170 PF01202 Shikimate kinase ccrud_RS11180 PF00857 Isochorismatase family ccrud_RS11190 PF00578 AhpC/TSA family ccrud_RS11200 PF01648 4'-phosphopantetheinyl transferase superfamily ccrud_RS11205 PF07690 Major Facilitator Superfamily ccrud_RS11220 PF00550 Phosphopantetheine attachment site ccrud_RS11220 PF00975 Thioesterase domain ccrud_RS11220 PF02801 Beta-ketoacyl synthase, C-terminal domain ccrud_RS11220 PF00109 Beta-ketoacyl synthase, N-terminal domain ccrud_RS11220 PF16197 Ketoacyl-synthetase C-terminal extension ccrud_RS11220 PF00698 Acyl transferase domain ccrud_RS11230 PF17853 GGDEF-like domain ccrud_RS11230 PF13556 PucR C-terminal helix-turn-helix domain ccrud_RS11230 PF05651 Putative sugar diacid recognition ccrud_RS11255 PF12823 Domain of unknown function (DUF3817) ccrud_RS11260 PF01725 Ham1 family ccrud_RS11265 PF03725 3' exoribonuclease family, domain 2 ccrud_RS11265 PF01138 3' exoribonuclease family, domain 1 ccrud_RS11270 PF12706 Beta-lactamase superfamily domain ccrud_RS11275 PF01177 Asp/Glu/Hydantoin racemase ccrud_RS11285 PF01047 MarR family ccrud_RS11290 PF01694 Rhomboid family ccrud_RS11295 PF03576 Peptidase family S58 ccrud_RS11305 PF02617 ATP-dependent Clp protease adaptor protein ClpS ccrud_RS11315 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ccrud_RS11315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ccrud_RS11320 PF13307 Helicase C-terminal domain ccrud_RS11340 PF00115 Cytochrome C and Quinol oxidase polypeptide I ccrud_RS11345 PF00268 Ribonucleotide reductase, small chain ccrud_RS11350 PF00210 Ferritin-like domain ccrud_RS11355 PF07729 FCD domain ccrud_RS11355 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS11360 PF08343 Ribonucleotide reductase N-terminal ccrud_RS11360 PF02867 Ribonucleotide reductase, barrel domain ccrud_RS11360 PF00317 Ribonucleotide reductase, all-alpha domain ccrud_RS11365 PF07972 NrdI Flavodoxin like ccrud_RS11370 PF00462 Glutaredoxin ccrud_RS11375 PF00444 Ribosomal protein L36 ccrud_RS11380 PF02540 NAD synthase ccrud_RS11395 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS11395 PF00107 Zinc-binding dehydrogenase ccrud_RS11410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ccrud_RS11410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ccrud_RS11410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ccrud_RS11410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ccrud_RS11415 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ccrud_RS11420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ccrud_RS11425 PF07286 Protein of unknown function (DUF1445) ccrud_RS11435 PF00375 Sodium:dicarboxylate symporter family ccrud_RS11440 PF12704 MacB-like periplasmic core domain ccrud_RS11440 PF00005 ABC transporter ccrud_RS11440 PF02687 FtsX-like permease family ccrud_RS11445 PF00005 ABC transporter ccrud_RS11475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ccrud_RS11475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ccrud_RS11505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ccrud_RS11510 PF01923 Cobalamin adenosyltransferase ccrud_RS11515 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS11515 PF13185 GAF domain ccrud_RS11520 PF00291 Pyridoxal-phosphate dependent enzyme ccrud_RS11525 PF00132 Bacterial transferase hexapeptide (six repeats) ccrud_RS11525 PF06426 Serine acetyltransferase, N-terminal ccrud_RS11545 PF02629 CoA binding domain ccrud_RS11545 PF00549 CoA-ligase ccrud_RS11550 PF00549 CoA-ligase ccrud_RS11550 PF08442 ATP-grasp domain ccrud_RS11580 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ccrud_RS11580 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ccrud_RS11585 PF01207 Dihydrouridine synthase (Dus) ccrud_RS11590 PF01895 PhoU domain ccrud_RS11595 PF00005 ABC transporter ccrud_RS11600 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS11605 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS11610 PF12849 PBP superfamily domain ccrud_RS11615 PF00583 Acetyltransferase (GNAT) family ccrud_RS11615 PF13508 Acetyltransferase (GNAT) domain ccrud_RS11625 PF00781 Diacylglycerol kinase catalytic domain ccrud_RS11630 PF08768 Domain of unknown function (DUF1794) ccrud_RS11650 PF02769 AIR synthase related protein, C-terminal domain ccrud_RS11650 PF00586 AIR synthase related protein, N-terminal domain ccrud_RS11655 PF00156 Phosphoribosyl transferase domain ccrud_RS11670 PF03006 Haemolysin-III related ccrud_RS11675 PF02769 AIR synthase related protein, C-terminal domain ccrud_RS11675 PF00586 AIR synthase related protein, N-terminal domain ccrud_RS11675 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ccrud_RS11685 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ccrud_RS11690 PF00255 Glutathione peroxidase ccrud_RS11705 PF00375 Sodium:dicarboxylate symporter family ccrud_RS11710 PF00326 Prolyl oligopeptidase family ccrud_RS11710 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ccrud_RS11715 PF01259 SAICAR synthetase ccrud_RS11720 PF00206 Lyase ccrud_RS11720 PF10397 Adenylosuccinate lyase C-terminus ccrud_RS11725 PF00155 Aminotransferase class I and II ccrud_RS11730 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ccrud_RS11730 PF02844 Phosphoribosylglycinamide synthetase, N domain ccrud_RS11730 PF02843 Phosphoribosylglycinamide synthetase, C domain ccrud_RS11735 PF01230 HIT domain ccrud_RS11740 PF00672 HAMP domain ccrud_RS11740 PF00512 His Kinase A (phospho-acceptor) domain ccrud_RS11740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS11745 PF00072 Response regulator receiver domain ccrud_RS11745 PF00486 Transcriptional regulatory protein, C terminal ccrud_RS11750 PF13411 MerR HTH family regulatory protein ccrud_RS11755 PF14031 Putative serine dehydratase domain ccrud_RS11760 PF07690 Major Facilitator Superfamily ccrud_RS11765 PF08362 YcdC-like protein, C-terminal region ccrud_RS11765 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS11780 PF00890 FAD binding domain ccrud_RS11785 PF00890 FAD binding domain ccrud_RS11790 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS11790 PF00107 Zinc-binding dehydrogenase ccrud_RS11800 PF07690 Major Facilitator Superfamily ccrud_RS11800 PF00083 Sugar (and other) transporter ccrud_RS11805 PF03466 LysR substrate binding domain ccrud_RS11805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS11810 PF07859 alpha/beta hydrolase fold ccrud_RS11820 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ccrud_RS11850 PF00982 Glycosyltransferase family 20 ccrud_RS11865 PF00356 Bacterial regulatory proteins, lacI family ccrud_RS11875 PF00005 ABC transporter ccrud_RS11880 PF00950 ABC 3 transport family ccrud_RS11885 PF00890 FAD binding domain ccrud_RS11895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ccrud_RS11895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ccrud_RS11900 PF00083 Sugar (and other) transporter ccrud_RS11900 PF07690 Major Facilitator Superfamily ccrud_RS11910 PF08032 RNA 2'-O ribose methyltransferase substrate binding ccrud_RS11910 PF00588 SpoU rRNA Methylase family ccrud_RS11915 PF09190 DALR domain ccrud_RS11915 PF01406 tRNA synthetases class I (C) catalytic domain ccrud_RS11920 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ccrud_RS11920 PF00367 phosphotransferase system, EIIB ccrud_RS11920 PF02378 Phosphotransferase system, EIIC ccrud_RS11925 PF00251 Glycosyl hydrolases family 32 N-terminal domain ccrud_RS11925 PF08244 Glycosyl hydrolases family 32 C terminal ccrud_RS11930 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ccrud_RS11935 PF01979 Amidohydrolase family ccrud_RS11940 PF00701 Dihydrodipicolinate synthetase family ccrud_RS11945 PF00480 ROK family ccrud_RS11950 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ccrud_RS11960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS11965 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS11970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ccrud_RS11970 PF00005 ABC transporter ccrud_RS11975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ccrud_RS11975 PF00005 ABC transporter ccrud_RS11985 PF02542 YgbB family ccrud_RS11990 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ccrud_RS11995 PF02559 CarD-like/TRCF domain ccrud_RS12000 PF00072 Response regulator receiver domain ccrud_RS12000 PF00486 Transcriptional regulatory protein, C terminal ccrud_RS12005 PF00512 His Kinase A (phospho-acceptor) domain ccrud_RS12005 PF00672 HAMP domain ccrud_RS12005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS12015 PF06745 KaiC ccrud_RS12015 PF18073 Rubredoxin metal binding domain ccrud_RS12020 PF02457 DisA bacterial checkpoint controller nucleotide-binding ccrud_RS12020 PF10635 DisA bacterial checkpoint controller linker region ccrud_RS12020 PF12826 Helix-hairpin-helix motif ccrud_RS12030 PF00484 Carbonic anhydrase ccrud_RS12035 PF00730 HhH-GPD superfamily base excision DNA repair protein ccrud_RS12035 PF00633 Helix-hairpin-helix motif ccrud_RS12050 PF00004 ATPase family associated with various cellular activities (AAA) ccrud_RS12050 PF02861 Clp amino terminal domain, pathogenicity island component ccrud_RS12050 PF10431 C-terminal, D2-small domain, of ClpB protein ccrud_RS12050 PF17871 AAA lid domain ccrud_RS12050 PF07724 AAA domain (Cdc48 subfamily) ccrud_RS12055 PF00478 IMP dehydrogenase / GMP reductase domain ccrud_RS12055 PF00571 CBS domain ccrud_RS12070 PF12833 Helix-turn-helix domain ccrud_RS12070 PF14525 AraC-binding-like domain ccrud_RS12075 PF07976 Phenol hydroxylase, C-terminal dimerisation domain ccrud_RS12075 PF01494 FAD binding domain ccrud_RS12080 PF07690 Major Facilitator Superfamily ccrud_RS12095 PF07690 Major Facilitator Superfamily ccrud_RS12105 PF01336 OB-fold nucleic acid binding domain ccrud_RS12105 PF00152 tRNA synthetases class II (D, K and N) ccrud_RS12110 PF02569 Pantoate-beta-alanine ligase ccrud_RS12130 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ccrud_RS12135 PF02152 Dihydroneopterin aldolase ccrud_RS12140 PF00809 Pterin binding enzyme ccrud_RS12145 PF01227 GTP cyclohydrolase I ccrud_RS12150 PF17862 AAA+ lid domain ccrud_RS12150 PF00004 ATPase family associated with various cellular activities (AAA) ccrud_RS12150 PF01434 Peptidase family M41 ccrud_RS12155 PF00156 Phosphoribosyl transferase domain ccrud_RS12160 PF01171 PP-loop family ccrud_RS12165 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ccrud_RS12170 PF00719 Inorganic pyrophosphatase ccrud_RS12180 PF03994 Domain of Unknown Function (DUF350) ccrud_RS12195 PF13785 Domain of unknown function (DUF4178) ccrud_RS12200 PF03123 CAT RNA binding domain ccrud_RS12200 PF00874 PRD domain ccrud_RS12205 PF00232 Glycosyl hydrolase family 1 ccrud_RS12210 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ccrud_RS12210 PF02378 Phosphotransferase system, EIIC ccrud_RS12210 PF00367 phosphotransferase system, EIIB ccrud_RS12215 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS12215 PF14759 Reductase C-terminal ccrud_RS12220 PF00581 Rhodanese-like domain ccrud_RS12230 PF00501 AMP-binding enzyme ccrud_RS12230 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS12230 PF00668 Condensation domain ccrud_RS12230 PF00975 Thioesterase domain ccrud_RS12230 PF00550 Phosphopantetheine attachment site ccrud_RS12235 PF00171 Aldehyde dehydrogenase family ccrud_RS12250 PF03976 Polyphosphate kinase 2 (PPK2) ccrud_RS12260 PF00118 TCP-1/cpn60 chaperonin family ccrud_RS12310 PF07687 Peptidase dimerisation domain ccrud_RS12310 PF01546 Peptidase family M20/M25/M40 ccrud_RS12320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ccrud_RS12320 PF00361 Proton-conducting membrane transporter ccrud_RS12320 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ccrud_RS12320 PF13244 Domain of unknown function (DUF4040) ccrud_RS12325 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ccrud_RS12330 PF00361 Proton-conducting membrane transporter ccrud_RS12340 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ccrud_RS12345 PF03334 Na+/H+ antiporter subunit ccrud_RS12355 PF04107 Glutamate-cysteine ligase family 2(GCS2) ccrud_RS12370 PF01327 Polypeptide deformylase ccrud_RS12380 PF03372 Endonuclease/Exonuclease/phosphatase family ccrud_RS12385 PF13091 PLD-like domain ccrud_RS12385 PF13396 Phospholipase_D-nuclease N-terminal ccrud_RS12390 PF07690 Major Facilitator Superfamily ccrud_RS12400 PF02567 Phenazine biosynthesis-like protein ccrud_RS12410 PF00005 ABC transporter ccrud_RS12415 PF00293 NUDIX domain ccrud_RS12425 PF00497 Bacterial extracellular solute-binding proteins, family 3 ccrud_RS12430 PF16919 Protein kinase G rubredoxin domain ccrud_RS12430 PF16918 Protein kinase G tetratricopeptide repeat ccrud_RS12430 PF00069 Protein kinase domain ccrud_RS12435 PF00871 Acetokinase family ccrud_RS12440 PF01515 Phosphate acetyl/butaryl transferase ccrud_RS12445 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS12450 PF13673 Acetyltransferase (GNAT) domain ccrud_RS12470 PF02222 ATP-grasp domain ccrud_RS12470 PF01370 NAD dependent epimerase/dehydratase family ccrud_RS12475 PF00709 Adenylosuccinate synthetase ccrud_RS12485 PF00430 ATP synthase B/B' CF(0) ccrud_RS12495 PF01116 Fructose-bisphosphate aldolase class-II ccrud_RS12510 PF00156 Phosphoribosyl transferase domain ccrud_RS12520 PF00581 Rhodanese-like domain ccrud_RS12540 PF02861 Clp amino terminal domain, pathogenicity island component ccrud_RS12540 PF17871 AAA lid domain ccrud_RS12540 PF07724 AAA domain (Cdc48 subfamily) ccrud_RS12540 PF00004 ATPase family associated with various cellular activities (AAA) ccrud_RS12540 PF10431 C-terminal, D2-small domain, of ClpB protein ccrud_RS12550 PF00743 Flavin-binding monooxygenase-like ccrud_RS12555 PF00296 Luciferase-like monooxygenase ccrud_RS12570 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS12570 PF00175 Oxidoreductase NAD-binding domain ccrud_RS12570 PF00970 Oxidoreductase FAD-binding domain ccrud_RS12575 PF00795 Carbon-nitrogen hydrolase ccrud_RS12590 PF00171 Aldehyde dehydrogenase family ccrud_RS12595 PF13411 MerR HTH family regulatory protein ccrud_RS12600 PF00684 DnaJ central domain ccrud_RS12600 PF01556 DnaJ C terminal domain ccrud_RS12600 PF00226 DnaJ domain ccrud_RS12605 PF01025 GrpE ccrud_RS12610 PF00012 Hsp70 protein ccrud_RS12615 PF01594 AI-2E family transporter ccrud_RS12620 PF01048 Phosphorylase superfamily ccrud_RS12625 PF00107 Zinc-binding dehydrogenase ccrud_RS12625 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS12635 PF00746 LPXTG cell wall anchor motif ccrud_RS12640 PF01925 Sulfite exporter TauE/SafE ccrud_RS12650 PF00009 Elongation factor Tu GTP binding domain ccrud_RS12655 PF01507 Phosphoadenosine phosphosulfate reductase family ccrud_RS12660 PF01507 Phosphoadenosine phosphosulfate reductase family ccrud_RS12665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ccrud_RS12665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ccrud_RS12670 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS12720 PF01546 Peptidase family M20/M25/M40 ccrud_RS12720 PF07687 Peptidase dimerisation domain ccrud_RS12725 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS12730 PF00005 ABC transporter ccrud_RS12730 PF09383 NIL domain ccrud_RS12735 PF03180 NLPA lipoprotein ccrud_RS12745 PF00005 ABC transporter ccrud_RS12775 PF00881 Nitroreductase family ccrud_RS12780 PF01156 Inosine-uridine preferring nucleoside hydrolase ccrud_RS12800 PF03352 Methyladenine glycosylase ccrud_RS12805 PF00042 Globin ccrud_RS12805 PF00175 Oxidoreductase NAD-binding domain ccrud_RS12805 PF00970 Oxidoreductase FAD-binding domain ccrud_RS12815 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ccrud_RS12815 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ccrud_RS12825 PF00232 Glycosyl hydrolase family 1 ccrud_RS12830 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ccrud_RS12830 PF00367 phosphotransferase system, EIIB ccrud_RS12830 PF02378 Phosphotransferase system, EIIC ccrud_RS12835 PF00155 Aminotransferase class I and II ccrud_RS12845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ccrud_RS12845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ccrud_RS12845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ccrud_RS12850 PF00692 dUTPase ccrud_RS12865 PF01613 Flavin reductase like domain ccrud_RS12875 PF01425 Amidase ccrud_RS12885 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS12885 PF00072 Response regulator receiver domain ccrud_RS12890 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS12890 PF00175 Oxidoreductase NAD-binding domain ccrud_RS12905 PF00355 Rieske [2Fe-2S] domain ccrud_RS12905 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ccrud_RS12920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS12935 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ccrud_RS12940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS12945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ccrud_RS12950 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS12955 PF00528 Binding-protein-dependent transport system inner membrane component ccrud_RS12955 PF12911 N-terminal TM domain of oligopeptide transport permease C ccrud_RS12960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ccrud_RS12960 PF00005 ABC transporter ccrud_RS12965 PF00884 Sulfatase ccrud_RS12975 PF00933 Glycosyl hydrolase family 3 N terminal domain ccrud_RS12990 PF11847 Alpha-(1->3)-arabinofuranosyltransferase ccrud_RS12995 PF01757 Acyltransferase family ccrud_RS13010 PF00534 Glycosyl transferases group 1 ccrud_RS13010 PF13439 Glycosyltransferase Family 4 ccrud_RS13020 PF08241 Methyltransferase domain ccrud_RS13025 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ccrud_RS13025 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ccrud_RS13040 PF02390 Putative methyltransferase ccrud_RS13050 PF03176 MMPL family ccrud_RS13065 PF01039 Carboxyl transferase domain ccrud_RS13070 PF00109 Beta-ketoacyl synthase, N-terminal domain ccrud_RS13070 PF02801 Beta-ketoacyl synthase, C-terminal domain ccrud_RS13070 PF00698 Acyl transferase domain ccrud_RS13070 PF16197 Ketoacyl-synthetase C-terminal extension ccrud_RS13070 PF00550 Phosphopantetheine attachment site ccrud_RS13070 PF00975 Thioesterase domain ccrud_RS13075 PF00501 AMP-binding enzyme ccrud_RS13080 PF01083 Cutinase ccrud_RS13090 PF00756 Putative esterase ccrud_RS13090 PF08310 LGFP repeat ccrud_RS13095 PF02447 GntP family permease ccrud_RS13105 PF00756 Putative esterase ccrud_RS13115 PF01040 UbiA prenyltransferase family ccrud_RS13120 PF01569 PAP2 superfamily ccrud_RS13125 PF17994 Galactofuranosyltransferase 2 N-terminal ccrud_RS13135 PF01569 PAP2 superfamily ccrud_RS13145 PF00743 Flavin-binding monooxygenase-like ccrud_RS13150 PF03275 UDP-galactopyranose mutase ccrud_RS13160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ccrud_RS13160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ccrud_RS13170 PF01553 Acyltransferase ccrud_RS13175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ccrud_RS13175 PF02403 Seryl-tRNA synthetase N-terminal domain ccrud_RS13180 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS13180 PF07702 UTRA domain ccrud_RS13200 PF01842 ACT domain ccrud_RS13200 PF00800 Prephenate dehydratase ccrud_RS13205 PF01425 Amidase ccrud_RS13215 PF16555 Gram-positive pilin subunit D1, N-terminal domain ccrud_RS13215 PF00746 LPXTG cell wall anchor motif ccrud_RS13220 PF04203 Sortase domain ccrud_RS13235 PF04203 Sortase domain ccrud_RS13240 PF03816 Cell envelope-related transcriptional attenuator domain ccrud_RS13250 PF03009 Glycerophosphoryl diester phosphodiesterase family ccrud_RS13255 PF07859 alpha/beta hydrolase fold ccrud_RS13260 PF02447 GntP family permease ccrud_RS13265 PF02887 Pyruvate kinase, alpha/beta domain ccrud_RS13265 PF00224 Pyruvate kinase, barrel domain ccrud_RS13270 PF00056 lactate/malate dehydrogenase, NAD binding domain ccrud_RS13270 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ccrud_RS13290 PF07702 UTRA domain ccrud_RS13290 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS13295 PF00149 Calcineurin-like phosphoesterase ccrud_RS13300 PF07690 Major Facilitator Superfamily ccrud_RS13300 PF00083 Sugar (and other) transporter ccrud_RS13305 PF01070 FMN-dependent dehydrogenase ccrud_RS13310 PF08000 Bacterial PH domain ccrud_RS13325 PF07687 Peptidase dimerisation domain ccrud_RS13325 PF01546 Peptidase family M20/M25/M40 ccrud_RS13330 PF01625 Peptide methionine sulfoxide reductase ccrud_RS13335 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ccrud_RS13335 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ccrud_RS13340 PF03466 LysR substrate binding domain ccrud_RS13340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ccrud_RS13345 PF07690 Major Facilitator Superfamily ccrud_RS13365 PF00072 Response regulator receiver domain ccrud_RS13365 PF00196 Bacterial regulatory proteins, luxR family ccrud_RS13370 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ccrud_RS13370 PF07730 Histidine kinase ccrud_RS13370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS13370 PF00672 HAMP domain ccrud_RS13385 PF04203 Sortase domain ccrud_RS13390 PF02096 60Kd inner membrane protein ccrud_RS13405 PF00582 Universal stress protein family ccrud_RS13410 PF00296 Luciferase-like monooxygenase ccrud_RS13420 PF00849 RNA pseudouridylate synthase ccrud_RS13420 PF01479 S4 domain ccrud_RS13450 PF07702 UTRA domain ccrud_RS13450 PF00392 Bacterial regulatory proteins, gntR family ccrud_RS13460 PF04012 PspA/IM30 family ccrud_RS13465 PF00085 Thioredoxin ccrud_RS13475 PF07690 Major Facilitator Superfamily ccrud_RS13480 PF03551 Transcriptional regulator PadR-like family ccrud_RS13485 PF00772 DnaB-like helicase N terminal domain ccrud_RS13485 PF03796 DnaB-like helicase C terminal domain ccrud_RS13490 PF01281 Ribosomal protein L9, N-terminal domain ccrud_RS13490 PF03948 Ribosomal protein L9, C-terminal domain ccrud_RS13495 PF00436 Single-strand binding protein family ccrud_RS13500 PF01250 Ribosomal protein S6 ccrud_RS13515 PF00912 Transglycosylase ccrud_RS13515 PF00905 Penicillin binding protein transpeptidase domain ccrud_RS13525 PF01047 MarR family ccrud_RS13530 PF00582 Universal stress protein family ccrud_RS13540 PF03992 Antibiotic biosynthesis monooxygenase ccrud_RS13545 PF12368 Rhodanase C-terminal ccrud_RS13545 PF17773 UPF0176 acylphosphatase like domain ccrud_RS13550 PF01658 Myo-inositol-1-phosphate synthase ccrud_RS13555 PF08903 Domain of unknown function (DUF1846) ccrud_RS13560 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ccrud_RS13560 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ccrud_RS13560 PF06827 Zinc finger found in FPG and IleRS ccrud_RS13565 PF01139 tRNA-splicing ligase RtcB ccrud_RS13575 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ccrud_RS13575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ccrud_RS13580 PF00107 Zinc-binding dehydrogenase ccrud_RS13580 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS13585 PF07690 Major Facilitator Superfamily ccrud_RS13590 PF03949 Malic enzyme, NAD binding domain ccrud_RS13590 PF00390 Malic enzyme, N-terminal domain ccrud_RS13605 PF04892 VanZ like family ccrud_RS13610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ccrud_RS13610 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS13615 PF01266 FAD dependent oxidoreductase ccrud_RS13625 PF00881 Nitroreductase family ccrud_RS13630 PF08264 Anticodon-binding domain of tRNA ccrud_RS13630 PF09334 tRNA synthetases class I (M) ccrud_RS13630 PF13603 Leucyl-tRNA synthetase, Domain 2 ccrud_RS13635 PF01381 Helix-turn-helix ccrud_RS13645 PF01557 Fumarylacetoacetate (FAA) hydrolase family ccrud_RS13650 PF07883 Cupin domain ccrud_RS13655 PF09339 IclR helix-turn-helix domain ccrud_RS13655 PF01614 Bacterial transcriptional regulator ccrud_RS13660 PF07690 Major Facilitator Superfamily ccrud_RS13665 PF01494 FAD binding domain ccrud_RS13670 PF00149 Calcineurin-like phosphoesterase ccrud_RS13690 PF00425 chorismate binding enzyme ccrud_RS13690 PF04715 Anthranilate synthase component I, N terminal region ccrud_RS13695 PF00117 Glutamine amidotransferase class-I ccrud_RS13700 PF00591 Glycosyl transferase family, a/b domain ccrud_RS13700 PF02885 Glycosyl transferase family, helical bundle domain ccrud_RS13705 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ccrud_RS13705 PF00218 Indole-3-glycerol phosphate synthase ccrud_RS13710 PF00291 Pyridoxal-phosphate dependent enzyme ccrud_RS13715 PF00290 Tryptophan synthase alpha chain ccrud_RS13725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ccrud_RS13730 PF00005 ABC transporter ccrud_RS13730 PF13732 Domain of unknown function (DUF4162) ccrud_RS13745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ccrud_RS13750 PF13593 SBF-like CPA transporter family (DUF4137) ccrud_RS13765 PF02416 mttA/Hcf106 family ccrud_RS13770 PF00854 POT family ccrud_RS13780 PF00970 Oxidoreductase FAD-binding domain ccrud_RS13780 PF00111 2Fe-2S iron-sulfur cluster binding domain ccrud_RS13780 PF00175 Oxidoreductase NAD-binding domain ccrud_RS13785 PF08360 QacR-like protein, C-terminal region ccrud_RS13785 PF00440 Bacterial regulatory proteins, tetR family ccrud_RS13790 PF00149 Calcineurin-like phosphoesterase ccrud_RS13800 PF13193 AMP-binding enzyme C-terminal domain ccrud_RS13800 PF00501 AMP-binding enzyme ccrud_RS13805 PF07690 Major Facilitator Superfamily ccrud_RS13810 PF09339 IclR helix-turn-helix domain ccrud_RS13810 PF01614 Bacterial transcriptional regulator ccrud_RS13825 PF00083 Sugar (and other) transporter ccrud_RS13845 PF00109 Beta-ketoacyl synthase, N-terminal domain ccrud_RS13845 PF14765 Polyketide synthase dehydratase ccrud_RS13845 PF00698 Acyl transferase domain ccrud_RS13845 PF08240 Alcohol dehydrogenase GroES-like domain ccrud_RS13845 PF00107 Zinc-binding dehydrogenase ccrud_RS13845 PF16197 Ketoacyl-synthetase C-terminal extension ccrud_RS13845 PF02801 Beta-ketoacyl synthase, C-terminal domain ccrud_RS13845 PF00550 Phosphopantetheine attachment site ccrud_RS13845 PF08659 KR domain ccrud_RS13855 PF08543 Phosphomethylpyrimidine kinase ccrud_RS13870 PF05437 Branched-chain amino acid transport protein (AzlD) ccrud_RS13875 PF03591 AzlC protein ccrud_RS13880 PF02622 Uncharacterized ACR, COG1678 ccrud_RS13885 PF12627 Probable RNA and SrmB- binding site of polymerase A ccrud_RS13885 PF13735 tRNA nucleotidyltransferase domain 2 putative ccrud_RS13885 PF01743 Poly A polymerase head domain ccrud_RS13890 PF00293 NUDIX domain ccrud_RS13900 PF03023 Lipid II flippase MurJ ccrud_RS13905 PF08281 Sigma-70, region 4 ccrud_RS13905 PF04542 Sigma-70 region 2 ccrud_RS13910 PF07992 Pyridine nucleotide-disulphide oxidoreductase ccrud_RS13915 PF00085 Thioredoxin ccrud_RS13920 PF01520 N-acetylmuramoyl-L-alanine amidase ccrud_RS13920 PF01471 Putative peptidoglycan binding domain ccrud_RS13930 PF17762 HTH domain found in ParB protein ccrud_RS13930 PF02195 ParB-like nuclease domain ccrud_RS13930 PF17762 HTH domain found in ParB protein ccrud_RS13930 PF02195 ParB-like nuclease domain ccrud_RS13935 PF13614 AAA domain ccrud_RS13940 PF02527 rRNA small subunit methyltransferase G ccrud_RS13945 PF02096 60Kd inner membrane protein ccrud_RS13950 PF00825 Ribonuclease P ccrud_RS13955 PF00468 Ribosomal protein L34 ccrud_RS13985 PF00204 DNA gyrase B ccrud_RS13985 PF00986 DNA gyrase B subunit, carboxyl terminus ccrud_RS13985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ccrud_RS13985 PF01751 Toprim domain